Query psy7582
Match_columns 661
No_of_seqs 184 out of 2232
Neff 7.6
Searched_HMMs 29240
Date Fri Aug 16 22:07:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7582.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7582hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h0g_B DNA-directed RNA polyme 100.0 6E-144 2E-148 1278.1 12.3 636 1-660 12-693 (1210)
2 1twf_B DNA-directed RNA polyme 100.0 3E-134 9E-139 1209.7 34.4 638 1-660 25-709 (1224)
3 4ayb_B DNA-directed RNA polyme 100.0 1E-113 4E-118 1038.3 32.9 589 1-659 8-634 (1131)
4 2a6h_C DNA-directed RNA polyme 100.0 7E-77 2.4E-81 699.6 11.5 393 5-487 4-462 (1119)
5 3lu0_C DNA-directed RNA polyme 100.0 7.7E-71 2.6E-75 641.3 -1.3 501 6-593 14-684 (1342)
6 3mlq_A DNA-directed RNA polyme 100.0 2.5E-31 8.4E-36 255.1 9.9 119 18-183 2-130 (188)
7 3lti_A DNA-directed RNA polyme 98.5 1.9E-07 6.6E-12 94.9 8.9 69 180-268 4-77 (296)
8 3h0g_B DNA-directed RNA polyme 88.5 0.071 2.4E-06 64.4 -0.8 35 604-638 662-696 (1210)
9 1twf_B DNA-directed RNA polyme 73.3 0.47 1.6E-05 57.7 -1.5 34 605-638 679-712 (1224)
10 3mjh_B Early endosome antigen 21.3 24 0.00082 23.6 0.4 9 458-466 2-10 (34)
No 1
>3h0g_B DNA-directed RNA polymerase II subunit RPB2; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.9e-144 Score=1278.09 Aligned_cols=636 Identities=60% Similarity=0.989 Sum_probs=541.6
Q ss_pred CcccchhhhhhcccCccchhHHHHHHHHHHHHhchhhhhccCCccccccccccCCCCCCCCCeEEEEEeEEEEcCCcccC
Q psy7582 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPRYLLKFEQIYLSKPTHWE 80 (661)
Q Consensus 1 ~~~~~~~~~i~~~f~~~~l~~~qi~SFn~Fi~~gl~~iv~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~i~i~~P~~~~ 80 (661)
+|++|+|.+|++||+.++|++|||||||+|+++||++|++++++++++.+.++.......+.++.|+|++++|++|++.+
T Consensus 12 ~~~ed~w~li~aff~~~gLV~qHIdSFN~FI~~~Lq~IV~~~~~I~~~~~~~~~~~~~~~~~~~~l~f~~i~v~kP~~~e 91 (1210)
T 3h0g_B 12 LTQEDCWTVISSFFEETSLARQQLFSFDEFVQNTMQEIVDDDSTLTLDQYAQHTGAQGDVTRRYEINFGQIYLSRPTMTE 91 (1210)
T ss_dssp CCHHHHHHHHHHHHHHTCTTCSSSSSSSSSTTTTHHHHSSTTCCCC-------------------CEEEEEECCCCCCBC
T ss_pred CCHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhHHHHHhccCcEEecCccCcccccccCCceEEEEEEEEEEcCCceec
Confidence 46789999999999999999999999999999999999999999987653321111122345789999999999999998
Q ss_pred CCCCCCCCChHHHHhcCCCccceEEEEEEEEEEcCCC---------c---ceeeeeEEEEeeccceeeccCccccCCCCh
Q psy7582 81 KDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGE---------E---PVTTQHQKSFIGKIPIMLRSTYCLLNGLTD 148 (661)
Q Consensus 81 ~~~~~~~l~P~ecR~r~~TYs~~l~v~v~~~~~~~~~---------~---~~~~~~~~v~lG~iPiMv~S~~C~L~~~~~ 148 (661)
+++..+++||+|||+|++||+|||+|+|.+++.+..+ . .......++.+|+|||||||++|||+++++
T Consensus 92 ~d~~~~~l~P~EcRlR~lTYsapl~Vdi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IG~iPIMlrS~~C~L~g~s~ 171 (1210)
T 3h0g_B 92 ADGSTTTMFPQEARLRNLTYSSPLYVDMRKKVMVAADSNVPIGEEEWLVEEEDEEPSKVFIGKIPIMLRSTFCILNGVSD 171 (1210)
T ss_dssp TTSCBCCCCTTTTTTTCCCCEEEEEEEEEC---------------------CCSSCCCEEEEEEECCSSSTTSSSSSCCH
T ss_pred CCCcccccCHHHHHhcCCccceeEEEEEEEEEcCccccccccccccccccccccccceEEEecCCEEeCCCcccCCCCCH
Confidence 8888899999999999999999999999987643210 0 001123578999999999999999999999
Q ss_pred hhhhhcCCCCCCCCceEEEcCeeeEEEeeeeeecCeEEEEEecC-CceeEEEEEEEeecCCCcCcceEEEEEEecCCccc
Q psy7582 149 RDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD-SKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSL 227 (661)
Q Consensus 149 ~el~~~~E~~~d~GGYFIInG~EkVii~q~~~~~n~i~~~~~~~-~~~~~~~~irs~~~~~~~~~~~~~l~~~~~g~~~~ 227 (661)
+||+++||||+|+||||||||+||||++|+++|+|+++++.++. ++..+.|+|||++++.++....+.+++..++..
T Consensus 172 ~eL~~~gEcp~D~GGYFIING~EKVII~qerla~N~~iv~~~~~~~~~~~~a~irS~~~~~~~~~s~~~v~~~~~~~~-- 249 (1210)
T 3h0g_B 172 SELYDLNECPYDQGGYFIINGSEKVIIAQERSAANIVQVFKKAAPSPIAYVAEIRSALERGSRLISSMQIKLMARNTE-- 249 (1210)
T ss_dssp HHHHHTTCCTTCCCCCBCGGGSCBCCCBCBCCCCSCCCCCCCCCSSSCCCCCCCCCCCCSSSCCCCCCCCCCCCCCTT--
T ss_pred HHHHhcCCCCCCCCCEEEEeCEEEEEEechhhccceEEEEeecCCCCceEEEEEEEEecCCccceeEEEEEEEecccc--
Confidence 99999999999999999999999999999999999999987654 344678899999987665544444555432210
Q ss_pred cccccccEEEEEecccccccchhhHHHHcCCCChHHHHHHhccCCCChHHHHhhhhhhhhhhhccCHHHHHHHHHhcCCC
Q psy7582 228 KKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGAR 307 (661)
Q Consensus 228 ~~~~~~~~i~~~~~~~~~~IP~~illkALg~~sd~eI~~~i~~~~~~~~~~~~l~~~~~~~~~~~t~~~al~yig~~~~~ 307 (661)
..++.+.+++++++.+||++++|||||.+||+||++.|+++..++.+.++|+++++++..++||++||+|||+++..
T Consensus 250 ---~~~~~i~~~~~~~~~~IPi~ivlkALg~~sD~EI~~~I~~~~~d~~~~~~l~~slee~~~i~tq~~aL~yIG~r~~~ 326 (1210)
T 3h0g_B 250 ---NSGQTIRATLPYIRSDIPIVIVFRALGVVPDRDILEHICYDPNDFQMLEMMKPCIEEAFVIQDKDIALDYIGKRGST 326 (1210)
T ss_dssp ---SCSCCCCCCCTTSCSCCCSHHHHTTTTCCSTTHHHHHHCCSSCCHHHHHTHHHHHHTTSSCCSSHHHHHTTCCCSSS
T ss_pred ---CCCceEEEEEeccccCCcHHHHHHHcCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhccc
Confidence 02345778899999999999999999999999999999988889999999999999987789999999999999754
Q ss_pred CCCChhhhHHHHHHHHHhccCCCCccCCccchhHHHHHHHHHHHHHhhccCCcCCCChHHH---------------HHHH
Q psy7582 308 PGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY---------------VRMY 372 (661)
Q Consensus 308 ~~~~~~~~~~~~~~~l~~~~l~Hig~~~~~~~~K~~~L~~Mi~kLl~~~~g~~~~Dd~D~~---------------~k~~ 372 (661)
.+.+.+.++++|+++|++++|||+|....++.+|+.||++|+||||.++.|.+.+||+||| +|..
T Consensus 327 ~~~~~~~~~~~a~~iL~~~lLpHl~~~~~~~~~Ka~fL~~MvrkLl~~~~G~~~~Dd~D~~~nkrl~l~G~Ll~~lfr~~ 406 (1210)
T 3h0g_B 327 TGVTREKRLRYAHDILQKELLPHITTMEGFETRKAFFLGYMIHRMLLCALERREPDDRDHFGKKRLDLAGPLLASLFRML 406 (1210)
T ss_dssp CCCCHHHHHHHHHHHHTTTSSCSSCCSSSCCSSHHHHHHHHHHHHHHHHTTSSCCCCTTCSSSCCBCCHHHHHHHHHHHH
T ss_pred cCCCchhHHHHHHHHHHhhEEeCcCCCccchhHHHHHHHHHHHHHHHHhCCCCCCCCCccccCeEEecHHHHHHHHHHHH
Confidence 4566777889999999999999999877777789999999999999999999999999999 2322
Q ss_pred -----------HHHHHhhCCCCchHHHhhhhccccchhhhcccCcchhhhccccccccceEEecccchhhhhhhccccCC
Q psy7582 373 -----------AQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNS 441 (661)
Q Consensus 373 -----------~~~~~~~~~~~~~~~~i~~~~it~~i~~~lsTGn~~~~~~~~~~~~G~sq~l~r~N~l~~lSh~Rrv~~ 441 (661)
+++.+++.+.+++..+++.+.||++|+||||||||++.+++.++++||||+|+|+||+|+|||||||++
T Consensus 407 ~~~~~~~i~~~l~k~~~~~~~~~~~~~i~~~~It~~l~~~laTGNW~~~kk~~~~~sGvsqvl~R~n~~s~lShlRrv~~ 486 (1210)
T 3h0g_B 407 FRKMTRDVYKYMQKCVETNREFNLTLAVKSNIITNGLRYSLATGNWGDQKRSMVNRVGVSQVLNRYTFASTLSHLRRTNT 486 (1210)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSCCCTTSSCSTTTSHHHHHHHSSSCSSTTSSCCSCCCCSCCBCCCSSHHHHHHHTTBBCC
T ss_pred HHHHHHHHHHHHHHHhhcCCccCHHHhcchhhhHHHHHHHhhcCCcccccccccCcCCEEEEcccCCHHHHHHHHHhccC
Confidence 223333556777778888889999999999999999899888999999999999999999999999999
Q ss_pred CCCCCCCCCCccccCCCcccccccCCCCCCcccccccccccceEEeecCCCchHHHHhhhhccccccccCcccccccccc
Q psy7582 442 PIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKI 521 (661)
Q Consensus 442 ~~~~~~k~~~~R~Lhps~wG~iCPveTPEG~~cGLv~~La~~a~Vs~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~V 521 (661)
|+++++|+++||+||||||||+||+|||||++|||+||||++|.||++.+..||.++|.++||++++.+++....+.++|
T Consensus 487 p~~~~~K~~~~R~Lhpt~WG~iCP~eTPEG~~cGLvknLal~~~Isvg~~~~pI~~~l~~~gme~le~~~~~~~~~~tkV 566 (1210)
T 3h0g_B 487 PIGRDGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSYVSVGSPSAPIIEFLEEWGLETLEDYNPSASPNATKV 566 (1210)
T ss_dssp SCCSSCCSSSSSSCCGGGTTTCCCSCCCSSSSTTTSCBCCSSCCBCCCCCSSHHHHHHHSSSCCCCSCCCSSSSSSSCCC
T ss_pred chhhccccccccccChhhheeeccccCCCCCcccccccccceeeeECCCCcHHHHHHHHHhCCcchhhcCcccCCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999988777666788999
Q ss_pred ccCCeEEEeeCChhhHHHHHHHHhhcCCcccceEEEEecCcCCceEEecCCCcccceeEEeeCC-------cccccHHHH
Q psy7582 522 FVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENG-------SLLLKKRHI 594 (661)
Q Consensus 522 ~lnG~~iG~~~~~~~~~~~lr~~rr~~~~i~~~v~~~~~~~~~~i~i~s~~gRl~RP~l~~~~~-------~~~~~~~~~ 594 (661)
||||+|+|++++|..|+++||.+||+ |.|+.+||+++|...++++||||+||+||||++|+|+ ++.++++|+
T Consensus 567 fvNG~wVGvh~dp~~Lv~~lR~lRR~-g~Is~eVSIvrdir~rE~~IfTDaGRv~RPLfvVen~~~~~~~g~L~l~k~hi 645 (1210)
T 3h0g_B 567 FVNGVWLGVHRDPAHLTETLRSLRRR-LDISAEVSIVRDIREKELRLFTDAGRICRPLFIVDNNPNSERRGELCIRKEHI 645 (1210)
T ss_dssp CSTTCCCCCCSCHHHHHHHHHHHHTT-TSSCTTCCCCCCTTTCCCCCCCSSCCBCCEEEECCCSSCSSSSCCCSSCHHHH
T ss_pred EECCEEEEEeCCHHHHHHHHHHHhhc-CCCCCceEEEecCCCCeEEEecCCCcccceEEEEccCCcccccccccccHHHH
Confidence 99999999999999999999999999 9999999999999999999999999999999999986 899999999
Q ss_pred HHhhhcccCCcCceEEeecceeeeecccchhhhhhhhhhhhhccchhhccccceeeeeEEEeccCC
Q psy7582 595 DNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDTLEEETTMIAMSPRL 660 (661)
Q Consensus 595 ~~l~~~~~~~~~~~~ll~kg~Ie~ld~~E~~~~~ia~~~~~l~~g~~e~~d~eEeet~~i~m~~~~ 660 (661)
++|.++... . .++.. ....|.+++.+|+|||||||||||+||||+|++
T Consensus 646 ~~L~~~~~~--~--------------~~~~~--~~~~w~~Lv~~GvIEylDaeEEet~mIamtpeD 693 (1210)
T 3h0g_B 646 QQLIEDKDR--Y--------------DIDPE--QRFGWTALVSSGLIEYLDAEEEETVMIAMSPED 693 (1210)
T ss_dssp HHHHHHHTC--C--------------CSCTT--CCCSSTTTTTTTSEEECCTTTGGGCCEESCHHH
T ss_pred HHHhccccc--c--------------ccccc--ccCCHHHHHhCCCEEEecHhhhhceeEEecHHH
Confidence 888653110 0 01111 126799999999999999999999999999974
No 2
>1twf_B DNA-directed RNA polymerase II 140 kDa polypeptid; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.1 PDB: 1i3q_B 1i6h_B 1k83_B* 1nik_B 1nt9_B 1pqv_B 1r5u_B 1r9s_B* 1r9t_B* 1sfo_B* 1twa_B* 1twc_B* 1i50_B* 1twg_B* 1twh_B* 1wcm_B 1y1v_B 1y1w_B 1y1y_B 1y77_B* ...
Probab=100.00 E-value=2.6e-134 Score=1209.65 Aligned_cols=638 Identities=53% Similarity=0.894 Sum_probs=516.8
Q ss_pred CcccchhhhhhcccCccchhHHHHHHHHHHHHhchhhhhccCCccccccccccCCCCCCCCCeEEEEEeEEEEcCCcccC
Q psy7582 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPRYLLKFEQIYLSKPTHWE 80 (661)
Q Consensus 1 ~~~~~~~~~i~~~f~~~~l~~~qi~SFn~Fi~~gl~~iv~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~i~i~~P~~~~ 80 (661)
++++|+|.++++||+.++|++|||+|||+|+++||++++++++||+++...++.........++.|+|+++++++|.+.+
T Consensus 25 ~~~~d~w~li~~~~~~~~Lv~~qidSFn~Fi~~gL~~iv~~~~~I~~~~~~~~~~~~~~~~~~~~l~f~~i~l~~P~~~e 104 (1224)
T 1twf_B 25 ITAEDSWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIICEDSTLILEQLAQHTTESDNISRKYEISFGKIYVTKPMVNE 104 (1224)
T ss_dssp CCTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHTHHHHHHHTTCBCC------------------CCEECCCEEEEEEECC
T ss_pred cCHHHHHHhHHHHHcCccHHHHHHHHHHHHHHHhHHHHHHhcCceeecCcccccccccccceEEEEEEEEEEEeCCceec
Confidence 36789999999999999999999999999999999999999999976332110000011124588999999999999988
Q ss_pred CCCCCCCCChHHHHhcCCCccceEEEEEEEEEEcCCCc----c------ee--ee--eEEEEeeccceeeccCccccCCC
Q psy7582 81 KDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEE----P------VT--TQ--HQKSFIGKIPIMLRSTYCLLNGL 146 (661)
Q Consensus 81 ~~~~~~~l~P~ecR~r~~TYs~~l~v~v~~~~~~~~~~----~------~~--~~--~~~v~lG~iPiMv~S~~C~L~~~ 146 (661)
.++..++++|+|||+|++||+|||+|++.+.....+.. . .+ .+ .++|++|+|||||||++|||+++
T Consensus 105 ~~~~~~~l~P~EcRlR~lTYsapl~v~v~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~iG~iPIMlrS~~C~L~~~ 184 (1224)
T 1twf_B 105 SDGVTHALYPQEARLRNLTYSSGLFVDVKKRTYEAIDVPGRELKYELIAEESEDDSESGKVFIGRLPIMLRSKNCYLSEA 184 (1224)
T ss_dssp SSSCCEECCHHHHHHTTCCCEEEEECCEECCCCC-------------------------CCEEEEEECCTTSTTSGGGTC
T ss_pred cCCccccCCHHHHhhcCCccceeEEEEEEEEEEeCCcccccccccccccccccccccceeeEeCCCCeEeccCcccCCCC
Confidence 88878899999999999999999999994432111111 0 01 11 34699999999999999999999
Q ss_pred ChhhhhhcCCCCCCCCceEEEcCeeeEEEeeeeeecCeEEEEEecC-CceeEEEEEEEeecCCCcCcceEEEEEEecCCc
Q psy7582 147 TDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKD-SKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQ 225 (661)
Q Consensus 147 ~~~el~~~~E~~~d~GGYFIInG~EkVii~q~~~~~n~i~~~~~~~-~~~~~~~~irs~~~~~~~~~~~~~l~~~~~g~~ 225 (661)
+++||+++||||+|+||||||||+||||++|+++++|++|++.+++ +++.|.++|||+.++.......+++++..+++.
T Consensus 185 s~~el~~~gEcp~D~GGYFIING~ERVIv~Qe~~s~N~i~~~~~~~~~~~~~~~~irsv~~~~~~~~~~~~l~~~~~~~~ 264 (1224)
T 1twf_B 185 TESDLYKLKECPFDMGGYFIINGSEKVLIAQERSAGNIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQVKLYGREGS 264 (1224)
T ss_dssp CHHHHHHTTCCTTCCCCSEEETTEEEEECEEEEECSSCCEEEECCTTSSEEEEEEEECCCSSSCCCCCEEEEEEESCSSC
T ss_pred CHHHHHhhccCccCCCCEEEEeCcEEEEEEeeeccCCeEEEEeccCCCcceEEEEEEEEeccCCcceeEEEEEEeccccC
Confidence 9999999999999999999999999999999999999999987655 345788999998876555556666676531100
Q ss_pred cccccccccEEEEEecccccccchhhHHHHcCCCChHHHHHHhccCCCChHHHHhhhhhhhhhhhccCHHHHHHHHHhcC
Q psy7582 226 SLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARG 305 (661)
Q Consensus 226 ~~~~~~~~~~i~~~~~~~~~~IP~~illkALg~~sd~eI~~~i~~~~~~~~~~~~l~~~~~~~~~~~t~~~al~yig~~~ 305 (661)
....+++++++++++||+++||||||.+||+||++.++++..++.+.+++.++++++..++|+++||.|||+++
T Consensus 265 ------~~~~i~vr~~~~k~~IPi~illkALG~~sD~eI~~~i~~~~~d~~~~~~l~~~l~e~~~~~t~~~AL~yIg~r~ 338 (1224)
T 1twf_B 265 ------SARTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPCVEDGFVIQDRETALDFIGRRG 338 (1224)
T ss_dssp ------SSCCEEEECTTCSSCEEHHHHHHHTTCCSHHHHHHHHCCCTTCHHHHHHHHHHHHHTTTCCSHHHHHHHHHHTT
T ss_pred ------CCCEEEEEEecccccccHHHHHHHhcCCCHHHHHHHhcccCCcHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhh
Confidence 02368999999888999999999999999999999999887788899999999998766889999999999994
Q ss_pred CCCCCChhhhHHHHHHHHHhccCCCCccCCccchhHHHHHHHHHHHHHhhccCCcCCCChHHH---------------HH
Q psy7582 306 ARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY---------------VR 370 (661)
Q Consensus 306 ~~~~~~~~~~~~~~~~~l~~~~l~Hig~~~~~~~~K~~~L~~Mi~kLl~~~~g~~~~Dd~D~~---------------~k 370 (661)
.+++.+.+.+.+.|+++|++++|||+|....+...|++||++|++||+.++.|.+.+||+||| +|
T Consensus 339 ~~~g~~~~~~~~~a~~iL~~~~l~Hvg~~~~~~~~K~~~L~~mi~kLl~~~~g~~~~DD~DhlgnkRv~l~G~Ll~~lfr 418 (1224)
T 1twf_B 339 TALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFK 418 (1224)
T ss_dssp SCTTSCHHHHHHHHHHHHHHTSSTTTCCSSSCHHHHHHHHHHHHHHHHHHHTTSSCCCCTTCGGGEEEECHHHHHHHHHH
T ss_pred ccCCCCCccHHHHHHHHHHhhcccccCCCccccccHHHHHHHHHHHHHHHhcCCCCCCCCccccccEEehhhHHHHHHHH
Confidence 455556677889999999999999999865555689999999999999999999999999999 23
Q ss_pred HHHHHHH-------h----hCCCCchHHHhhhhccccchhhhcccCcchhhhccccccccceEEecccchhhhhhhcccc
Q psy7582 371 MYAQKFI-------D----RGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRV 439 (661)
Q Consensus 371 ~~~~~~~-------~----~~~~~~~~~~i~~~~it~~i~~~lsTGn~~~~~~~~~~~~G~sq~l~r~N~l~~lSh~Rrv 439 (661)
..+.+.. . +.+.+++..+++.+.||++|++|||||||++.+.++++++||||+|||+||+|+||||||+
T Consensus 419 ~~~~r~~~~i~~~l~~~~~~~~~~~~~~~i~~~~It~~lk~~~aTGNw~~~k~~~~~~sGvSQvldr~n~ls~LSH~RRi 498 (1224)
T 1twf_B 419 TLFKKLTKDIFRYMQRTVEEAHDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRT 498 (1224)
T ss_dssp HHHHHHHHHHHHHHHSCCC--------CCCCTHHHHHHHHHHHHHCCCC---------CCCEEECCCSSHHHHHHHHTEE
T ss_pred HHHHHHHHHHHHHHHHHhhcccccchhhhhcccchhhcchhheeeccccccccccccccceeEeecccchhhhhhhhhcc
Confidence 3222221 1 2344566667777889999999999999988888888999999999999999999999999
Q ss_pred CCCCCCCCCCCCccccCCCcccccccCCCCCCcccccccccccceEEeecCCCchHHHHhhhhccccccccCcccccccc
Q psy7582 440 NSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADAT 519 (661)
Q Consensus 440 ~~~~~~~~k~~~~R~Lhps~wG~iCPveTPEG~~cGLv~~La~~a~Vs~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~ 519 (661)
|+|+++++|+++||+||||||||+||+|||||++||||||||++|+|+++.++.|+.++|.++||++++..++..+...+
T Consensus 499 ~~~~~r~~k~~~~R~LHpshwG~iCPiETPEG~~cGLVknLAl~a~Is~g~~~~pi~~~l~~~G~~~l~e~~~~~~~~~~ 578 (1224)
T 1twf_B 499 NTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPMPIITFLSEWGMEPLEDYVPHQSPDAT 578 (1224)
T ss_dssp ECCC------CCTTSCCGGGTTTBCSSCCCSGGGBTTEEEBCTTCEECCCCCCHHHHHHHHHTTCEEGGGCCGGGCTTCE
T ss_pred cccccccccccccccccCccceeecCCCCCCCcccchhhhHHhhCcccCCCCHHHHHHHHHHcCCcceeecccccCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999998877766666789
Q ss_pred ccccCCeEEEeeCChhhHHHHHHHHhhcCCcccceEEEEecCcCCceEEecCCCcccceeEEeeCC------cccccHHH
Q psy7582 520 KIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENG------SLLLKKRH 593 (661)
Q Consensus 520 ~V~lnG~~iG~~~~~~~~~~~lr~~rr~~~~i~~~v~~~~~~~~~~i~i~s~~gRl~RP~l~~~~~------~~~~~~~~ 593 (661)
+|||||+|+|++++|..++..+|.+||. |.++.+|+++++...++++||||+||+||||++|+|+ ++.++++|
T Consensus 579 kVfvnG~~vG~~~~p~~lv~~lr~lRR~-g~i~~evsiv~d~r~~ei~I~TD~GRv~RPl~vV~~~~~~~~~~l~l~k~h 657 (1224)
T 1twf_B 579 RVFVNGVWHGVHRNPARLMETLRTLRRK-GDINPEVSMIRDIREKELKIFTDAGRVYRPLFIVEDDESLGHKELKVRKGH 657 (1224)
T ss_dssp EEEETTEEEEEESCHHHHHHHHHHHHHH-TSSCTTCEEEEETTTTEEEEECCSCCEEEEEEEEECCCTTSSCEESCCHHH
T ss_pred EEEECCEEEEEeCCHHHHHHHHHHHHhc-cCCCCeEEEEEecccCeEEEeccCceeeeeEEEecCCCccccccceecHHH
Confidence 9999999999999999999999999999 9999999999999999999999999999999999998 89999999
Q ss_pred HHHhhhcccCCcCceEEeecceeeeecccchhhhhhhhhhhhhccchhhccccceeeeeEEEeccCC
Q psy7582 594 IDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDTLEEETTMIAMSPRL 660 (661)
Q Consensus 594 ~~~l~~~~~~~~~~~~ll~kg~Ie~ld~~E~~~~~ia~~~~~l~~g~~e~~d~eEeet~~i~m~~~~ 660 (661)
+++|.++... . ..+..+++ ....|.+++.+|+||||||||||++||||+|++
T Consensus 658 i~~L~~~~~~----------~---~~~~~~~~--~~~~w~~Lv~~G~iEyldaeEEe~~~Ia~~~~d 709 (1224)
T 1twf_B 658 IAKLMATEYQ----------D---IEGGFEDV--EEYTWSSLLNEGLVEYIDAEEEESILIAMQPED 709 (1224)
T ss_dssp HHHHHHHHHC----------C--------------CCCHHHHHHTTSEEEEEHHHHTTCCEESSGGG
T ss_pred HHHhhhcccc----------c---cccccccc--cccchhHhccCCcEEEcChhhhcCcEEeccccc
Confidence 9888543110 0 00011111 125799999999999999999999999999974
No 3
>4ayb_B DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_B 2y0s_B 2waq_B 4b1o_B 4b1p_R 2pmz_B 3hkz_B
Probab=100.00 E-value=1.1e-113 Score=1038.29 Aligned_cols=589 Identities=39% Similarity=0.641 Sum_probs=494.5
Q ss_pred CcccchhhhhhcccCccchhHHHHHHHHHHHHhchhhhhccCCccccccccccCCCCCCCCCeEEEEEeEEEEcCCcccC
Q psy7582 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPRYLLKFEQIYLSKPTHWE 80 (661)
Q Consensus 1 ~~~~~~~~~i~~~f~~~~l~~~qi~SFn~Fi~~gl~~iv~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~i~i~~P~~~~ 80 (661)
+|.+|+|.+|++||+.++|++|||||||||+++||++++++++||+.. .+++.|+|+++++++|.+.+
T Consensus 8 ~~~~d~w~~i~~~f~~~gLV~~qidSfn~Fl~~gL~~i~~~~~pI~~~------------~~~~~l~f~~~~l~~P~~~e 75 (1131)
T 4ayb_B 8 LSIDERWKVIEAYFKSKGLVRQHLDSYNDFVRNKLQEIIDEQGEIPTE------------IPGLKVRLGKIRIGKPRVRE 75 (1131)
T ss_dssp CCHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHTTTHHHHHHHCSCCCS------------STTCEEEEEEEEECCSEEEE
T ss_pred CChhHHHHHHHHHhCCCCCcHHHHHHHHHHHHhCHHHHHHhcCCeeec------------CCCEEEEEEEEEEeCCeeec
Confidence 577899999999999999999999999999999999999999998632 34689999999999999988
Q ss_pred CCCCCCCCChHHHHhcCCCccceEEEEEEEEEEcCCCcceeeeeEEEEeeccceeeccCccccCCCChhhhhhcCCCCCC
Q psy7582 81 KDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLD 160 (661)
Q Consensus 81 ~~~~~~~l~P~ecR~r~~TYs~~l~v~v~~~~~~~~~~~~~~~~~~v~lG~iPiMv~S~~C~L~~~~~~el~~~~E~~~d 160 (661)
.++..+++||+|||+|++||+|||+|++.+... + .+.+.++|++|+|||||+|++|||+++++++|+++||||+|
T Consensus 76 ~d~~~~~l~P~EcR~r~~TYsapl~v~v~~~~~-~----~~~~~~~v~lG~iPiM~~S~~C~L~~~s~~el~~~gEc~~D 150 (1131)
T 4ayb_B 76 SDRGEREISPMEARLRNLTYAAPLWLTMIPVEN-N----IEAEPEEVYIGDLPIMLKSAIDPISQYTLDKLIEIGEDPKD 150 (1131)
T ss_dssp TTTEEEECCHHHHHHHTCCCEEEEEEEEEEEET-T----EECCCEEEEEEEEECCTTSTTSGGGGCCHHHHHHHTCCTTC
T ss_pred CCCCcCccCHHHHHhcCCCccceEEEEEEEEEC-C----cEEEEEEEEEEECCEEeCCCcccCCCCCHHHHHhcCCCcCC
Confidence 887778999999999999999999999987642 1 12346789999999999999999999999999999999999
Q ss_pred CCceEEEcCeeeEEEeeeeeecCeEEEEEecC-CceeEEEEEEEeecCCCcCcceEEEEEEecCCccccccccccEEEEE
Q psy7582 161 PGGYFIINGSEKVLIAQEKMATNTVYVFSMKD-SKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAI 239 (661)
Q Consensus 161 ~GGYFIInG~EkVii~q~~~~~n~i~~~~~~~-~~~~~~~~irs~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~i~~~ 239 (661)
+||||||||+||||++|++++||++|++..++ +++.+.+++++.+.... ..+.+++..+| .++++
T Consensus 151 ~GGyFIING~ERVIv~Q~~~spn~~~~~~~~~~~~~~~~a~ii~~~~~~~---~~~~i~~~~~~-----------~~~v~ 216 (1131)
T 4ayb_B 151 PGGYFIVNGSERVIVTQEDLAPNRVLVDTGKTGSNITHTAKIISSTAGYR---VPVTIERLKDG-----------TFHVS 216 (1131)
T ss_dssp CCCCEEETTEEEEECEEEEECCSSCEEEECCTTCSEEEEEECEEECSSCE---EECCEEEETTT-----------CCEEC
T ss_pred CCcEEEeCCEEEEEEEeeccCCCeEEEEeccCCCcEEEEEEEEECCCCce---eeEEEEEeCCC-----------EEEEE
Confidence 99999999999999999999999888876554 56788888877653211 11224454333 36778
Q ss_pred ecccccccchhhHHHHcCCCChHHHHHHhccCCCChHHHHhhhhhhhhhhhccCHHHHHHHHHhcCCCCCCChhhhHHHH
Q psy7582 240 LPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYA 319 (661)
Q Consensus 240 ~~~~~~~IP~~illkALg~~sd~eI~~~i~~~~~~~~~~~~l~~~~~~~~~~~t~~~al~yig~~~~~~~~~~~~~~~~~ 319 (661)
++..+.+||+++||||||..||+||++.++ .++++.+.+..+++++..+.++++||.|||++.. ++...+...+.|
T Consensus 217 ~~~~~~~iPi~illrALG~~sD~eI~~~i~---~~~~~~~~l~~~~~~~~~i~~~~~al~~i~~r~~-~~~~~~~~~~~a 292 (1131)
T 4ayb_B 217 FPAVPGKIPFVILMRALGILTDRDIVYAVS---LDPEIQNELFPSLEQASSIANVDDALDFIGSRVA-IGQKRENRIEKA 292 (1131)
T ss_dssp CSSSCCCEEHHHHHHHHTCCSHHHHHHHHC---SCHHHHTTTHHHHHHHTTTCCSSHHHHHHHHHHH-CSSCHHHHHHHH
T ss_pred EcCcCceeeHHHHHHHhCCcchhhHHHHhc---ccHHHHHHHHHHHHHhcccccHHHHHHHHhhhhh-cCCCCchhHHHH
Confidence 888888999999999999999999999998 4667777777788887788999999999999843 344556677899
Q ss_pred HHHHHhccCCCCccCCccchhHHHHHHHHHHHHHhhccCCcCCCChHHH---------------HHHHHHHH---H----
Q psy7582 320 REILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY---------------VRMYAQKF---I---- 377 (661)
Q Consensus 320 ~~~l~~~~l~Hig~~~~~~~~K~~~L~~Mi~kLl~~~~g~~~~Dd~D~~---------------~k~~~~~~---~---- 377 (661)
+++|++++|||++....+...|+.+|++|++||+.+..|.+.+||+||| +|..+.+. +
T Consensus 293 ~~il~~~~l~hl~~~~~~~~~K~~~L~~mi~~Ll~l~~g~~~~DD~Dhl~NkRvr~vGeLl~~~fr~~l~r~~r~ir~~~ 372 (1131)
T 4ayb_B 293 QQIIDKYFLPHLGTSADDRRKKAYYLAYAISKVIELYLGRREPDDKDHYANKRLRLAGDLFASLFRVAFKAFVKDLTYQL 372 (1131)
T ss_dssp HHHHHTTSSTTSCSSTTSHHHHHHHHHHHHHHHHHHHHTSSCCCCTTSGGGEEEECHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHcCCCCCCCCcchhcceecchhHHHHHHHHHHHHHHHHHhhhhc
Confidence 9999999999999877777789999999999999999999999999999 22222211 1
Q ss_pred h----hCCCCchHHHhhhhccccchhhhcccCcchhhhccccccccceEEecccchhhhhhhccccCCCCCCCCCCCCcc
Q psy7582 378 D----RGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPR 453 (661)
Q Consensus 378 ~----~~~~~~~~~~i~~~~it~~i~~~lsTGn~~~~~~~~~~~~G~sq~l~r~N~l~~lSh~Rrv~~~~~~~~k~~~~R 453 (661)
. +...+++..+++.+.||+++++||||||| +.+++|+||+|||+||+|+|||+||+|+++++++|.++||
T Consensus 373 ~~~~~~~~~~~~~~li~~~~it~~i~~~~aTGn~------~~~~sglSQ~mdq~NpLs~lsH~RRlsagl~rera~~evR 446 (1131)
T 4ayb_B 373 EKSKVRGRKLALKALVRPDIVTERIRHALATGNW------VGGRTGVSQLLDRTNWLSMLSHLRRVISSLARGQPNFEAR 446 (1131)
T ss_dssp HHHSTTCSCCCHHHHCCTHHHHHHHHHHHHTTBC------SSSCBCCEEECCCSSHHHHHHHHTEEEECSCSSSCCHHHH
T ss_pred ccchhcccccchhhhcCCchhhhhhHHHHhhccc------ccCCCceEEEeccCCHHHHHHhhhhhcCCccccccccccc
Confidence 1 33456677788888999999999999999 2489999999999999999999999999999999999999
Q ss_pred ccCCCcccccccCCCCCCcccccccccccceEEeecCCCchHHHHhhhhccccccc----cCcc-----ccccccccccC
Q psy7582 454 QLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEE----IAPS-----AIADATKIFVN 524 (661)
Q Consensus 454 ~Lhps~wG~iCPveTPEG~~cGLv~~La~~a~Vs~~~~~~~i~~~l~~~g~~~~~~----~~~~-----~~~~~~~V~ln 524 (661)
+|||||||||||||||||+|||||||||++|+|+.++++.++.+++.++|+.+++. ++.. .+....+|++|
T Consensus 447 dlHpShyGriCPIETPEG~niGLI~sLA~~a~I~~g~~e~~i~~~l~~~g~~~~e~~~~~~~~~~~~~~~~~~~~~v~ln 526 (1131)
T 4ayb_B 447 DLHGTQWGRMCPFETPEGPNSGLVKNLALMAQIAVGINEKIVEKTLYEMGVVPVEEVIRRVTEGGEDQNEYLKWSKVILN 526 (1131)
T ss_dssp SCCGGGTTTBCSSCCCSSTTBTTEEEBBSSCEECCCCCHHHHHHHHHHTTCEEHHHHHHTTTTC-----CCCCCCEEEET
T ss_pred ccCHhhccccccccCCCCccccccccceeeEEEecCCCCcceeeehhhcCceeeeeeehhhcccccccchhhhhcceeec
Confidence 99999999999999999999999999999999999999999999999999877542 2211 11244679999
Q ss_pred CeEEEeeCChhhHHHHHHHHhhcCCcccceEEEEec--CcCCceEEecCCCcccceeEEeeCCcccccHHHHHHhhhccc
Q psy7582 525 GCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIRD--IRDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDY 602 (661)
Q Consensus 525 G~~iG~~~~~~~~~~~lr~~rr~~~~i~~~v~~~~~--~~~~~i~i~s~~gRl~RP~l~~~~~~~~~~~~~~~~l~~~~~ 602 (661)
|+|+|++.++..++..+|..|+. +.++.+|++.+. ...+++++++|+||++|||+.++++.|++..+++..+..+
T Consensus 527 g~~vg~~~~~~~~~~~~~~~~~~-~~i~~~vsi~~~~~~~~~~~~i~~d~~r~~rpv~~~~~~~p~v~~~~~~~~~~g-- 603 (1131)
T 4ayb_B 527 GRLVGYYRDGEELAKKIRERRRK-GEISDEVNVGHIVTDFINEVHVNCDSGRVRRPLIIVSNGNPLVTREDIEKLDSG-- 603 (1131)
T ss_dssp TEEEEECSCHHHHHHHHHHHHHH-TSSCTTCEEEEECTTTCCEEEEECCTTCEEEEEEEBSSSSBSCCHHHHHHHHTT--
T ss_pred CceEEEeccchhhhhhhhhhhcc-CccCceEEEeeccccccceeeeecCCcccccceEEeecccccccHHHHHHHhcC--
Confidence 99999999999999999999998 888888888754 3457899999999999999999999999999877665322
Q ss_pred CCcCceEEeecceeeeecccchhhhhhhhhhhhhccchhhccccceeeeeEEEeccC
Q psy7582 603 NNYGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDTLEEETTMIAMSPR 659 (661)
Q Consensus 603 ~~~~~~~ll~kg~Ie~ld~~E~~~~~ia~~~~~l~~g~~e~~d~eEeet~~i~m~~~ 659 (661)
... |.+.+.+|.|||+|++|++.++|||+++
T Consensus 604 -~~~-------------------------~~~~~~~g~veyvd~~e~~~~~ia~~~~ 634 (1131)
T 4ayb_B 604 -SIT-------------------------FDDLVRQGKIEYLDAEEEENAYVALEPS 634 (1131)
T ss_dssp -TCC-------------------------HHHHHHTTSEEEEEHHHHTTCCEESSGG
T ss_pred -Chh-------------------------HHHHhhCCceeeeeccccceeEEEeecc
Confidence 223 4444555666666666666666666554
No 4
>2a6h_C DNA-directed RNA polymerase beta chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.1 PDB: 1smy_C* 1zyr_C* 1iw7_C* 2a69_C* 2a6e_C 2a68_C* 2be5_C* 2cw0_C 2o5i_C 2o5j_C* 2ppb_C* 3aoh_C* 3aoi_C* 3dxj_C* 3eql_C* 1ynj_C* 1ynn_C* 2gho_C 1hqm_C 1l9u_C ...
Probab=100.00 E-value=7e-77 Score=699.63 Aligned_cols=393 Identities=22% Similarity=0.352 Sum_probs=310.4
Q ss_pred chhhhhhcccCccchhHHHHHHHHHHH----------HhchhhhhccCCccccccccccCCCCCCCCCeEEEEEeEEEEc
Q psy7582 5 ACWIVINAYFDEKGLVRQQLDSFDEFI----------QMSVQRIVEDSPQIDLQAEAQHTSTEVETPPRYLLKFEQIYLS 74 (661)
Q Consensus 5 ~~~~~i~~~f~~~~l~~~qi~SFn~Fi----------~~gl~~iv~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~i~i~ 74 (661)
..|..++.+|+.++|+++|++|||||+ ++||++++++++||+... ..+.++.|+|.+++++
T Consensus 4 ~~~~~~~~~~~~p~Lv~~QidSFn~Fl~~~~~~~~~~~~GL~~i~~~~~pI~~~~---------~~~~~~~l~f~~~~l~ 74 (1119)
T 2a6h_C 4 KRFGRIREVIPLPPLTEIQVESYRRALQADVPPEKRENVGIQAAFRETFPIEEED---------KGKGGLVLDFLEYRLG 74 (1119)
T ss_dssp EECCCCCCCSCCCCTTHHHHHHHHHHSCTTSCTTSSCCCHHHHHHHHHCSEEECC---------SSSCCEEEEECCCCBC
T ss_pred eecccccccccCcCHHHHHHHHHHHHHccCCccccchhhhHHHHHHhcCCEeccC---------CCCCeEEEEEEEEEEc
Confidence 468899999999999999999999999 999999999999996421 1245799999999999
Q ss_pred CCcccCCCCCCCCCChHHHHhcCCCccceEEEEEEEEEEcCCCcceeeeeEEEEeeccceeeccCccccCCCChhhhhhc
Q psy7582 75 KPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTEL 154 (661)
Q Consensus 75 ~P~~~~~~~~~~~l~P~ecR~r~~TYs~~l~v~v~~~~~~~~~~~~~~~~~~v~lG~iPiMv~S~~C~L~~~~~~el~~~ 154 (661)
+|.+ +|+|||+|++||+|||+|+++++..+.+ ..+.++|++|+||||+
T Consensus 75 ~P~~----------~p~Ecr~r~lTYsapL~V~v~l~~~~~~----~ik~~~V~iG~iPiMt------------------ 122 (1119)
T 2a6h_C 75 EPPF----------PQDECREKDLTYQAPLYARLQLIHKDTG----LIKEDEVFLGHIPLMT------------------ 122 (1119)
T ss_dssp CCSS----------CHHHHHHTTCCCEEEBCCCEEECCSSSC----CEECCCCCCCEEECCC------------------
T ss_pred CCCC----------CHHHHHhcCCcccceEEEEEEEEECCCc----eeeeeEEEecCCCeEC------------------
Confidence 9986 9999999999999999999998643222 1234579999999999
Q ss_pred CCCCCCCCceEEEcCeeeEEEeeeeeecCeEEEEE-ecCCceeEEEEEEEeecCCCcCcceEEEEEEecCCccccccccc
Q psy7582 155 NECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFS-MKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIG 233 (661)
Q Consensus 155 ~E~~~d~GGYFIInG~EkVii~q~~~~~n~i~~~~-~~~~~~~~~~~irs~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~ 233 (661)
+||||||||+||||++|++++||.+|... +++++..|++.+ .+.++.|+++..+. +
T Consensus 123 ------~gGyFIING~ERVIVsQ~~rspgv~~~~~~~~~g~~~ysa~i--------i~~rgs~l~~~~d~-----~---- 179 (1119)
T 2a6h_C 123 ------EDGSFIINGADRVIVSQIHRSPGVYFTPDPARPGRYIASIIP--------LPKRGPWIDLEVEP-----N---- 179 (1119)
T ss_dssp ------TTSCCCSSSSCEEECEEEEECSCEEEECCSSCSSCCEEEECC--------CSSSSCCEEEEEET-----T----
T ss_pred ------CCcEEEEeCeEEEEEEEEecCCcEEEEeeccCCCceEEEEEE--------EeccCceEEEEEcC-----C----
Confidence 79999999999999999999999555443 235556777754 34566788887532 1
Q ss_pred cEEEEEecccccccchhhHHHHcCCCChHHHHHHhccCCCChHHHHhhhhhhhhh-hhccCHHHHHHHHHhcCCCCCCCh
Q psy7582 234 QRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA-FVIQEQNVALNFIGARGARPGVTK 312 (661)
Q Consensus 234 ~~i~~~~~~~~~~IP~~illkALg~~sd~eI~~~i~~~~~~~~~~~~l~~~~~~~-~~~~t~~~al~yig~~~~~~~~~~ 312 (661)
..++++++. .+||+++||||||+ ||+||++.++. ++.+.+.+ .+. ..+.++++||.||+++.. |+..
T Consensus 180 ~~i~vri~r--~kIPi~ilLrALG~-sD~eIl~~~~~---~~~~~~tl----~~d~~~~~~~~eAl~~i~~~lr-~g~~- 247 (1119)
T 2a6h_C 180 GVVSMKVNK--RKFPLVLLLRVLGY-DQETLARELGA---YGELVQGL----MDESVFAMRPEEALIRLFTLLR-PGDP- 247 (1119)
T ss_dssp TEEEEESSS--SEECHHHHHHHHTC-CHHHHHHHHHS---SCTTHHHH----SSCHHHHTCHHHHHHHHHHHSS-SCCC-
T ss_pred CEEEEEEeC--cceeHHHHHHHHCC-CHHHHHHHHcc---CHHHHHHH----HhhhcccCCHHHHHHHHHHHhc-CCCC-
Confidence 268899887 78999999999999 99999999983 33333333 221 126789999999999853 2221
Q ss_pred hhhHHHHHHHHHhcc-------CCCCccCCccch------------hHH-----HHHHHHHHHHHhhccCCc--CCCChH
Q psy7582 313 ERRIKYAREILQKEM-------LPHVGVSDFCET------------KKA-----YFLGYMVHRLLLASLGRR--ELDDRD 366 (661)
Q Consensus 313 ~~~~~~~~~~l~~~~-------l~Hig~~~~~~~------------~K~-----~~L~~Mi~kLl~~~~g~~--~~Dd~D 366 (661)
...+.|+.+|.+.+ |+|+|+...|.. .+. ..+++|++||+.+..|.+ .+||+|
T Consensus 248 -~~~e~a~~~l~~~ff~~~rydl~~vGr~~ln~kl~l~~~~~~~~~~~~~~l~~~di~~mi~~Ll~l~~G~~~~~~DD~D 326 (1119)
T 2a6h_C 248 -PKRDKAVAYVYGLIADPRRYDLGEAGRYKAEEKLGIRLSGRTLARFEDGEFKDEVFLPTLRYLFALTAGVPGHEVDDID 326 (1119)
T ss_dssp -SCCSSHHHHHTSSSSSSCCSCTTTSSHHHHHTTSCSCCSTTTTCCCSSSCCCCTTHHHHHHHHHHHHTSCSSCCCCCTT
T ss_pred -CcHHHHHHHHHHhhCCcccccchhcchhhhhhhhccCCccccccccccccccHHHHHHHHHHHHHhhcCCCCCCCcCcc
Confidence 12345888888766 789986543221 010 236789999999999999 999999
Q ss_pred HH---------------HHHHHHHH-------Hh--hCCCCchHHHhhhhccccchhhhcccCcchhhhccccccccceE
Q psy7582 367 HY---------------VRMYAQKF-------ID--RGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQ 422 (661)
Q Consensus 367 ~~---------------~k~~~~~~-------~~--~~~~~~~~~~i~~~~it~~i~~~lsTGn~~~~~~~~~~~~G~sq 422 (661)
|| +|..+.+. ++ ....+++..+++.+.||+++++||+||+ |||
T Consensus 327 hlgNkRv~~~GeLl~~~fr~~l~r~~~~i~~~~~~~~~~~~~~~~~i~~~~It~~lk~ff~tg~-------------lSQ 393 (1119)
T 2a6h_C 327 HLGNRRIRTVGELMTDQFRVGLARLARGVRERMLMGSEDSLTPAKLVNSRPLEAAIREFFSRSQ-------------LSQ 393 (1119)
T ss_dssp STTTEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSTTTCCSHHHHHHHHHHHHTCS-------------SEE
T ss_pred hhhceEehhhhHHHHHHHHHHHHHHHHHHHHHhhhhcccccchHHhhccchhHHHHHHHhhccC-------------ccc
Confidence 99 22222111 11 1233455556667789999999998875 579
Q ss_pred EecccchhhhhhhccccCC--C--CCCCCCCCCccccCCCcccccccCCCCCCcccccccccccceEEe
Q psy7582 423 VLNRLTFASSLSHLRRVNS--P--IGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYIS 487 (661)
Q Consensus 423 ~l~r~N~l~~lSh~Rrv~~--~--~~~~~k~~~~R~Lhps~wG~iCPveTPEG~~cGLv~~La~~a~Vs 487 (661)
+|||+||+|+|||+||+++ | +++++|+++||+||||||||+||+|||||+|||||||||++|+|+
T Consensus 394 ~Ldq~N~ls~LsH~RRisslgpggl~re~k~~~vRdlHpShwGriCPiETPEG~ncGLVknLAl~a~I~ 462 (1119)
T 2a6h_C 394 FKDETNPLSSLRHKRRISALGPGGLTRERAGFDVRDVHRTHYGRICPVETPEGANIGLITSLAAYARVD 462 (1119)
T ss_dssp ECCCSSTHHHHHHHHEEESSSSSSSCCSSCCHHHHSCCGGGTTTBCSSCSCSSSSCSSEEEBCSSCEEC
T ss_pred cccccchHhhhhhhheecccCCCccccccccCcccccCHhhCcccCCCcCCCCCcccchhhhhhheeec
Confidence 9999999999999999987 4 679999999999999999999999999999999999999999997
No 5
>3lu0_C DNA-directed RNA polymerase subunit beta; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_C*
Probab=100.00 E-value=7.7e-71 Score=641.35 Aligned_cols=501 Identities=22% Similarity=0.323 Sum_probs=343.1
Q ss_pred hhhhhhcccCccchhHHHHHHHHHHHH------hchhhhhccCCccccccccccCCCCCCCCCeEEEEEeEEEEcCCccc
Q psy7582 6 CWIVINAYFDEKGLVRQQLDSFDEFIQ------MSVQRIVEDSPQIDLQAEAQHTSTEVETPPRYLLKFEQIYLSKPTHW 79 (661)
Q Consensus 6 ~~~~i~~~f~~~~l~~~qi~SFn~Fi~------~gl~~iv~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~i~i~~P~~~ 79 (661)
.+.-++.-+..|+|+++|++||+||++ .||++++++++||+. .+.++.|+|.++++++|.+
T Consensus 14 ~f~k~~~~~~~P~Ll~iQ~~Sf~~Fl~~~~r~~~GL~evf~~~fPI~d------------~~~~~~Lef~~y~l~~Pk~- 80 (1342)
T 3lu0_C 14 DFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQS------------YSGNSELQYVSYRLGEPVF- 80 (1342)
T ss_dssp CSSCCCCSSCCCCGGGTTHHHHHHHSCSSSCSCSTTHHHHTTTSSCEE------------TTTTEECCEEEECCCCCSC-
T ss_pred ccccCCcCCCCCCHHHHHHHHHHHHHcCCccccchHHHHHHhcCCEEC------------CCCCEEEEEeeEEeCCCCC-
Confidence 455567778889999999999999997 899999999999953 3467899999999999987
Q ss_pred CCCCCCCCCChHHHHhcCCCccceEEEEEEEEEEcCCCc---ceeeeeEEEEeeccceeeccCccccCCCChhhhhhcCC
Q psy7582 80 EKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEE---PVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNE 156 (661)
Q Consensus 80 ~~~~~~~~l~P~ecR~r~~TYs~~l~v~v~~~~~~~~~~---~~~~~~~~v~lG~iPiMv~S~~C~L~~~~~~el~~~~E 156 (661)
++.||++|++||+|||+|+++++....... ....+.++|++|+||+|+
T Consensus 81 ---------~~~Ec~~r~lTYsapL~v~~rL~~~~~d~~~~~~~eikeq~Vy~GdiPLMT-------------------- 131 (1342)
T 3lu0_C 81 ---------DVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMT-------------------- 131 (1342)
T ss_dssp ---------CSSTTTSSCCCCCCCCBEEECCEECCCSSCCCCCCCCCBCCCBCCCCCCCC--------------------
T ss_pred ---------CHHHHHhcCCCcccceEEEEEEEEeccccccccccceEEEEEEEecCceEC--------------------
Confidence 779999999999999999999876431111 123456789999999999
Q ss_pred CCCCCCceEEEcCeeeEEEeeeeeecCeEEEEEec-----CCceeEEEEEEEeecCCCcCcceEEEEEEecCCccccccc
Q psy7582 157 CPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMK-----DSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSA 231 (661)
Q Consensus 157 ~~~d~GGYFIInG~EkVii~q~~~~~n~i~~~~~~-----~~~~~~~~~irs~~~~~~~~~~~~~l~~~~~g~~~~~~~~ 231 (661)
.+|||||||+||||++|+++||| +|+..++ +++..|+|.| .|.++.|+.+..+. +
T Consensus 132 ----~~GtFIING~ERVIVsQl~RSPG-Vyf~~~~~k~~~~gk~lysa~I--------IP~RGsWlefe~D~-----k-- 191 (1342)
T 3lu0_C 132 ----DNGTFVINGTERVIVSQLHRSPG-VFFDSDKGKTHSSGKVLYNARI--------IPYRGSWLDFEFDP-----K-- 191 (1342)
T ss_dssp ----SSSCEESSSSEEECCEEEECCSS-CCCCSCCSCSSSCCCSCCEEEE--------CCSSSCCEEEEEET-----T--
T ss_pred ----CCcEEEEcCceEEEEEeecccCc-eeEeccccccCCCCceEEEEEE--------ecCCCccEEEEEcC-----C--
Confidence 79999999999999999999999 6664332 3566777876 56788999987542 2
Q ss_pred cccEEEEEecccccccchhhHHHHcCCCChHHHHHHhccC---------------------------CCC----------
Q psy7582 232 IGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYD---------------------------FDD---------- 274 (661)
Q Consensus 232 ~~~~i~~~~~~~~~~IP~~illkALg~~sd~eI~~~i~~~---------------------------~~~---------- 274 (661)
..+++++.. ++++|+.+||||||+ ++++|++.++.. +.+
T Consensus 192 --d~l~vrIdr-~rKipvt~lLrALG~-~~~~Il~~f~~~~~~~~~~~~~~~~~~~e~~~g~~~~~di~~~g~vi~~~g~ 267 (1342)
T 3lu0_C 192 --DNLFVRIDR-RRKLPATIILRALNY-TTEQILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGR 267 (1342)
T ss_dssp --TEEEEEESS-CSCEETTHHHHTTTC-CHHHHHTTTSCEEEECEETTEEEECCCGGGGTTEECCSCEEETTEEEECSSS
T ss_pred --CeEEEEecC-CCceeeehhHhHhCC-CHHHHHHHhcccceEEeccCceeeecchhhhcccccccchhccccceecccc
Confidence 258889985 679999999999999 778999877420 000
Q ss_pred ---hHHHHh--------------------------------------------hhhhhhhh-------------------
Q psy7582 275 ---PEMMEM--------------------------------------------VKPSLDEA------------------- 288 (661)
Q Consensus 275 ---~~~~~~--------------------------------------------l~~~~~~~------------------- 288 (661)
...... +...+.++
T Consensus 268 ~it~~~~~~l~~~g~~~i~v~~~~l~g~~la~divd~~tge~~~~~~~~i~~~~l~~l~~~~i~~~~~l~~~~~~~~~~i 347 (1342)
T 3lu0_C 268 RITARHIRQLEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYI 347 (1342)
T ss_dssp EECSHHHHHHHHTTCCCEECCSHHHHTSEECSCEECTTTCCEEECSSCBCCTTHHHHHHHHTCSCEEEECCCSSSSCCSG
T ss_pred cccHHHHHHHHhccCcccccCHHHhhcchhhheeeecCCCeEEecCCcccCHHHHHHHHHcCCcEEEEEecccccccHHH
Confidence 000000 00000000
Q ss_pred ------hhccCHHHHHHHHHhcCCCCCCChhhhHHHHHHHHH-------hccCCCCccCCccc-----------hhHHHH
Q psy7582 289 ------FVIQEQNVALNFIGARGARPGVTKERRIKYAREILQ-------KEMLPHVGVSDFCE-----------TKKAYF 344 (661)
Q Consensus 289 ------~~~~t~~~al~yig~~~~~~~~~~~~~~~~~~~~l~-------~~~l~Hig~~~~~~-----------~~K~~~ 344 (661)
....++++||.+|+++.. |+.+. ..+.|+.++. +|.|+|+|+.+.|. .-+...
T Consensus 348 ~~tl~~d~~~~~~eAl~~iyr~lr-pgep~--t~e~a~~l~~~lFf~~~rYdL~~VGR~k~N~kL~l~~~~~~~~Lt~~D 424 (1342)
T 3lu0_C 348 SETLRVDPTNDRLSALVEIYRMMR-PGEPP--TREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDD 424 (1342)
T ss_dssp GGTTTTCCCCSSHHHHHHHHHHHS-CSSCC--CTTHHHHHHHHHHSCTTTCCCTTTHHHHHHTTTTCSCCCCCSSCCTTH
T ss_pred HHHHhhccCCCHHHHHHHHHHhcC-CCCCC--CHHHHHHHHHHhhcCcccccchhhhhHHHhhhcCCCcCccccEecHHH
Confidence 124578999999999853 44331 1234555443 47789999654331 112334
Q ss_pred HHHHHHHHHhhccCCcCCCChHHH----HHHHHHHHHh--hCCCCchHHHhhhh-------ccccchhhhcccCc-chhh
Q psy7582 345 LGYMVHRLLLASLGRRELDDRDHY----VRMYAQKFID--RGKDFNLELAIKTK-------IITDGLRYSLATGN-WGDQ 410 (661)
Q Consensus 345 L~~Mi~kLl~~~~g~~~~Dd~D~~----~k~~~~~~~~--~~~~~~~~~~i~~~-------~it~~i~~~lsTGn-~~~~ 410 (661)
+..++++|+.+..|....||+||| +|.+++...+ +.....+.+.++.. .++ ...++.+.. ....
T Consensus 425 Ii~~i~~Li~l~~g~~~~DDiDHLgNrRvr~vGeLl~~qfr~~l~r~~r~i~~~~~~~~~~~~~--~~~lin~~~i~~~~ 502 (1342)
T 3lu0_C 425 IIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLM--PQDMINAKPISAAV 502 (1342)
T ss_dssp HHHHHHHHHHHHHTSSCCCCSSSTTTSEEECHHHHHHHTHHHHHHHHHHHHTTHHHHCCSSCCS--STTTCCSSTTHHHH
T ss_pred HHHHHHHHHHHhhCCCCCcchhhhhcchhchHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCC--HHHHhccchHHHHH
Confidence 556799999999999999999999 4444433322 11111111211110 011 001111111 1233
Q ss_pred hccccccccceEEecccchhhhhhhccccCC--CC--CCCCCCCCccccCCCcccccccCCCCCCcccccccccccceEE
Q psy7582 411 KKAHQARAGVSQVLNRLTFASSLSHLRRVNS--PI--GRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYI 486 (661)
Q Consensus 411 ~~~~~~~~G~sq~l~r~N~l~~lSh~Rrv~~--~~--~~~~k~~~~R~Lhps~wG~iCPveTPEG~~cGLv~~La~~a~V 486 (661)
+.|+ +++|+||+|||+||+|+|||+||+++ |. .++++.+.+|++||||||||||+|||||+|||||+|||++|+|
T Consensus 503 k~ff-g~s~lSQ~lDqtNpLseltHkRRlsalGPGGLsr~~a~fevRdvH~thyGRiCPiETPEG~niGLI~sLA~~a~i 581 (1342)
T 3lu0_C 503 KEFF-GSSQLSQFMVQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQT 581 (1342)
T ss_dssp TTTT-TTCSSCEECCCSSHHHHHHHHSBEESCCSTTSCCSSCCTTTSSCCTTCSSSSCTTCCCSSSCSSSCCBCCSSCCB
T ss_pred HHHh-CccccceeecCCCHHHHHhhhhcccccCCCCccccccCceecccCcccccccccccCCCCCceeeecchhheEEe
Confidence 4455 78999999999999999999999986 44 4888889999999999999999999999999999999999999
Q ss_pred e-ecCCCchHHHHhhhhccccccccCccccc------cccccccCCeEEEeeCChhhHHHHHHHHhhcCCcccceEEEEe
Q psy7582 487 S-VGSQPSPILEFLEEWSMENLEEIAPSAIA------DATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIR 559 (661)
Q Consensus 487 s-~~~~~~~i~~~l~~~g~~~~~~~~~~~~~------~~~~V~lnG~~iG~~~~~~~~~~~lr~~rr~~~~i~~~v~~~~ 559 (661)
+ .|+.++|++++..+.....+.++++.+-. ...++--+|.++ +.+-..|.. + .++.+.+
T Consensus 582 n~~GfietPyr~V~~g~v~~~i~yLsA~eE~~~~IAqan~~l~~~g~~~----------~~~v~~R~~-~---e~~~~~~ 647 (1342)
T 3lu0_C 582 NEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFV----------EDLVTCRSK-G---ESSLFSR 647 (1342)
T ss_dssp CSSSCBCEEEEEEETTEEEEEEEEECTTTGGGSCBCCSSSCCSSSSCCS----------CSSEEEECS-S---CEEEECT
T ss_pred ccCCcccCCcEEEECCEEcCceeeCChHHhcCceEEecCcccCCCCccc----------CCeEEEEec-C---ceEEeCh
Confidence 9 78889998877654433445666665411 112222223222 111112222 3 2233322
Q ss_pred cCc-C---CceEEecCCCcccceeEEeeCCcccccHHH
Q psy7582 560 DIR-D---REIRIHTDAGRICRPLLIAENGSLLLKKRH 593 (661)
Q Consensus 560 ~~~-~---~~i~i~s~~gRl~RP~l~~~~~~~~~~~~~ 593 (661)
+.. + ..-+|.|.++.|+ ||++|+|+...|..++
T Consensus 648 ~~v~~~dvsP~qivSvaaslI-PFLEhdDAnRaLMGsN 684 (1342)
T 3lu0_C 648 DQVDYMDVSTQQVVSVGASLI-PFLEHDDANRALMGAN 684 (1342)
T ss_dssp TTCCEEESCTTTTSCHHHHSC-TTSTTBCHHHHHHHHH
T ss_pred HHCeeEecCHHHhcchhhccC-CCcccCCccccchhhh
Confidence 221 1 2348899999999 9999999765554443
No 6
>3mlq_A DNA-directed RNA polymerase subunit beta; tudor, transferase-transcription complex; 2.91A {Thermus aquaticus}
Probab=99.97 E-value=2.5e-31 Score=255.10 Aligned_cols=119 Identities=25% Similarity=0.499 Sum_probs=104.6
Q ss_pred chhHHHHHHHHHHH----------HhchhhhhccCCccccccccccCCCCCCCCCeEEEEEeEEEEcCCcccCCCCCCCC
Q psy7582 18 GLVRQQLDSFDEFI----------QMSVQRIVEDSPQIDLQAEAQHTSTEVETPPRYLLKFEQIYLSKPTHWEKDGSPSP 87 (661)
Q Consensus 18 ~l~~~qi~SFn~Fi----------~~gl~~iv~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~i~i~~P~~~~~~~~~~~ 87 (661)
+|+++|++|||||+ ++||++++++++||+... ..+.++.|+|.++++++|.+
T Consensus 2 ~Lv~~Q~~SF~~Flq~~~~~~~r~~~GL~ei~~~~~pI~~~~---------~~~~~~~L~f~~~~l~~P~~--------- 63 (188)
T 3mlq_A 2 PLTEIQVESYKKALQADVPPEKRENVGIQAAFKETFPIEEGD---------KGKGGLVLDFLEYRIGDPPF--------- 63 (188)
T ss_dssp CCHHHHHHHHHHHHCTTSCGGGCCSCHHHHHHHHHCCEEECC---------SSSCCEEEEEEEEEECCCSS---------
T ss_pred CHHHHHHHHHHHHHhCCcccccchhhcHHHHHHhcCCeeecc---------CCCCeEEEEEEEEEecCCCC---------
Confidence 68999999999999 899999999999997421 12367999999999999975
Q ss_pred CChHHHHhcCCCccceEEEEEEEEEEcCCCcceeeeeEEEEeeccceeeccCccccCCCChhhhhhcCCCCCCCCceEEE
Q psy7582 88 MMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFII 167 (661)
Q Consensus 88 l~P~ecR~r~~TYs~~l~v~v~~~~~~~~~~~~~~~~~~v~lG~iPiMv~S~~C~L~~~~~~el~~~~E~~~d~GGYFII 167 (661)
+|+|||+|++||+|||+|+++++...++ ..+.++|++|+||+|+ +||||||
T Consensus 64 -~p~Ecr~r~lTYsapl~v~v~l~~~~~~----~i~~~~v~iG~iPlMt------------------------~gGyFII 114 (188)
T 3mlq_A 64 -SQDECREKDLTYQAPLYARLQLIHKDTG----LIKEDEVFLGHLPLMT------------------------EDGSFII 114 (188)
T ss_dssp -CHHHHHHTTCCCEEEEEEEEEEEETTTC----CEEEEEEEEEEEECCC------------------------TTSCEEE
T ss_pred -CHHHHHhcCCCcceeEEEEEEEEECCCc----eEEEEEEEEcccCEEC------------------------CCCEEEE
Confidence 9999999999999999999998743222 2345789999999999 8999999
Q ss_pred cCeeeEEEeeeeeecC
Q psy7582 168 NGSEKVLIAQEKMATN 183 (661)
Q Consensus 168 nG~EkVii~q~~~~~n 183 (661)
||+||||++|+++++|
T Consensus 115 NG~ERVIVsQe~r~~g 130 (188)
T 3mlq_A 115 NGADRVIVSQGGRTVG 130 (188)
T ss_dssp TTEEEECCCCSSSCHH
T ss_pred CCEEEEEEEeecccCC
Confidence 9999999999999999
No 7
>3lti_A DNA-directed RNA polymerase subunit beta; BBM2, nucleotidyltransferase, transcription, transferase; HET: MLY MSE; 1.60A {Escherichia coli} PDB: 3e7h_A
Probab=98.51 E-value=1.9e-07 Score=94.91 Aligned_cols=69 Identities=25% Similarity=0.479 Sum_probs=49.5
Q ss_pred eecCeEEEEEec-----CCceeEEEEEEEeecCCCcCcceEEEEEEecCCccccccccccEEEEEecccccccchhhHHH
Q psy7582 180 MATNTVYVFSMK-----DSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFR 254 (661)
Q Consensus 180 ~~~n~i~~~~~~-----~~~~~~~~~irs~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~i~~~~~~~~~~IP~~illk 254 (661)
+||+ +|+..+. .|+..|+|.| .|.++.|+.+..+. ++ .+++++.. ++++|+.+|||
T Consensus 4 ~SPG-v~f~~~~~~ths~g~~~y~~~i--------IP~RGsWlefe~d~-----~d----~~~vrIdr-~rK~p~t~lLr 64 (296)
T 3lti_A 4 MSPG-VFFDSDKGKTHSSGKVLYNARI--------IPYRGSWLDFEFDP-----KD----NLFVRIDR-RRKLPATIILR 64 (296)
T ss_dssp CCCE-EEEEEC---------CCEEEEE--------ECSBSCCEEEEECT-----TS----CEEEEETT-CCCEETHHHHH
T ss_pred CCCE-EEEecccCCcCCCCcEEEEEEE--------ecCCCceEEEEEcC-----CC----eEEEEEcC-cccchHHHHHH
Confidence 5778 5554332 3556787876 57889999987543 22 47888864 66899999999
Q ss_pred HcCCCChHHHHHHh
Q psy7582 255 ALGFVADRDILEHI 268 (661)
Q Consensus 255 ALg~~sd~eI~~~i 268 (661)
|||+ +++||++.+
T Consensus 65 AlG~-~~edIL~~F 77 (296)
T 3lti_A 65 ALNY-TTEQILDLF 77 (296)
T ss_dssp HTTC-CHHHHHHHH
T ss_pred HcCC-ChHHHHHhc
Confidence 9999 788999888
No 8
>3h0g_B DNA-directed RNA polymerase II subunit RPB2; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=88.45 E-value=0.071 Score=64.37 Aligned_cols=35 Identities=49% Similarity=0.836 Sum_probs=32.4
Q ss_pred CcCceEEeecceeeeecccchhhhhhhhhhhhhcc
Q psy7582 604 NYGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQS 638 (661)
Q Consensus 604 ~~~~~~ll~kg~Ie~ld~~E~~~~~ia~~~~~l~~ 638 (661)
..+|++|++.|.|||||++||++++|||+++++..
T Consensus 662 ~~~w~~Lv~~GvIEylDaeEEet~mIamtpeDL~~ 696 (1210)
T 3h0g_B 662 RFGWTALVSSGLIEYLDAEEEETVMIAMSPEDLEA 696 (1210)
T ss_dssp CCSSTTTTTTTSEEECCTTTGGGCCEESCHHHHHH
T ss_pred cCCHHHHHhCCCEEEecHhhhhceeEEecHHHhhh
Confidence 46999999999999999999999999999999854
No 9
>1twf_B DNA-directed RNA polymerase II 140 kDa polypeptid; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.1 PDB: 1i3q_B 1i6h_B 1k83_B* 1nik_B 1nt9_B 1pqv_B 1r5u_B 1r9s_B* 1r9t_B* 1sfo_B* 1twa_B* 1twc_B* 1i50_B* 1twg_B* 1twh_B* 1wcm_B 1y1v_B 1y1w_B 1y1y_B 1y77_B* ...
Probab=73.32 E-value=0.47 Score=57.71 Aligned_cols=34 Identities=44% Similarity=0.753 Sum_probs=32.2
Q ss_pred cCceEEeecceeeeecccchhhhhhhhhhhhhcc
Q psy7582 605 YGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQS 638 (661)
Q Consensus 605 ~~~~~ll~kg~Ie~ld~~E~~~~~ia~~~~~l~~ 638 (661)
.+|++|++.|.|||||++||++++||+.++++.+
T Consensus 679 ~~w~~Lv~~G~iEyldaeEEe~~~Ia~~~~dl~~ 712 (1224)
T 1twf_B 679 YTWSSLLNEGLVEYIDAEEEESILIAMQPEDLEP 712 (1224)
T ss_dssp CCHHHHHHTTSEEEEEHHHHTTCCEESSGGGGCC
T ss_pred cchhHhccCCcEEEcChhhhcCcEEeccccccCc
Confidence 5999999999999999999999999999999876
No 10
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=21.27 E-value=24 Score=23.58 Aligned_cols=9 Identities=44% Similarity=0.970 Sum_probs=6.7
Q ss_pred CcccccccC
Q psy7582 458 TLWGMICPA 466 (661)
Q Consensus 458 s~wG~iCPv 466 (661)
|+=||+||+
T Consensus 2 ~~EGFiCP~ 10 (34)
T 3mjh_B 2 SSEGFICPQ 10 (34)
T ss_dssp CSEEEECTT
T ss_pred CCcccCCcH
Confidence 455899986
Done!