Your job contains 1 sequence.
>psy7582
LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET
PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV
TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM
ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL
PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF
IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR
ELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGV
SQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNL
ALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGT
LRKLRRQMDIIVSEVSIIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRHIDNLKER
DYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDTLEEETTMIAMSPRL
K
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy7582
(661 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0262955 - symbol:RpII140 "RNA polymerase II 140kD ... 1800 2.6e-312 2
UNIPROTKB|A5PJW8 - symbol:POLR2B "DNA-directed RNA polyme... 1752 1.2e-303 2
UNIPROTKB|E2RNN5 - symbol:POLR2B "DNA-directed RNA polyme... 1752 1.2e-303 2
UNIPROTKB|C9J2Y9 - symbol:POLR2B "DNA-directed RNA polyme... 1752 1.2e-303 2
UNIPROTKB|P30876 - symbol:POLR2B "DNA-directed RNA polyme... 1752 1.2e-303 2
UNIPROTKB|I3LGP4 - symbol:POLR2B "DNA-directed RNA polyme... 1752 1.2e-303 2
MGI|MGI:2388280 - symbol:Polr2b "polymerase (RNA) II (DNA... 1752 1.2e-303 2
RGD|1309477 - symbol:Polr2b "polymerase (RNA) II (DNA dir... 1752 1.2e-303 2
UNIPROTKB|F1NCB0 - symbol:POLR2B "DNA-directed RNA polyme... 1746 6.8e-303 2
ZFIN|ZDB-GENE-041008-1 - symbol:polr2b "polymerase (RNA) ... 1748 2.9e-302 2
UNIPROTKB|F1P4F2 - symbol:POLR2B "DNA-directed RNA polyme... 1737 6.1e-302 2
UNIPROTKB|C9J4M6 - symbol:POLR2B "DNA-directed RNA polyme... 1469 1.1e-273 2
WB|WBGene00016140 - symbol:rpb-2 species:6239 "Caenorhabd... 1601 7.0e-270 2
TAIR|locus:2119013 - symbol:NRPB2 species:3702 "Arabidops... 1167 4.1e-213 3
DICTYBASE|DDB_G0288257 - symbol:rpb2 "RNA polymerase II c... 1100 3.0e-202 3
ASPGD|ASPL0000039770 - symbol:AN9120 species:162425 "Emer... 725 7.8e-167 3
POMBASE|SPAC23G3.01 - symbol:rpb2 "RNA polymerase II comp... 1492 5.8e-153 1
GENEDB_PFALCIPARUM|PFB0715w - symbol:PFB0715w "DNA-direct... 822 7.8e-149 2
UNIPROTKB|O96236 - symbol:PFB0715w "DNA-directed RNA poly... 822 7.8e-149 2
CGD|CAL0004145 - symbol:orf19.3349 species:5476 "Candida ... 1161 6.9e-118 1
UNIPROTKB|Q5A8Y5 - symbol:RPB140 "DNA-directed RNA polyme... 1161 6.9e-118 1
SGD|S000005677 - symbol:RPB2 "RNA polymerase II second la... 867 1.4e-86 1
SGD|S000005733 - symbol:RET1 "Second-largest subunit of R... 656 1.1e-78 3
ZFIN|ZDB-GENE-030131-2887 - symbol:polr3b "polymerase (RN... 395 1.5e-76 3
UNIPROTKB|F8VRE2 - symbol:POLR3B "DNA-directed RNA polyme... 728 2.9e-74 2
UNIPROTKB|F1SPQ0 - symbol:LOC100737037 "DNA-directed RNA ... 723 9.7e-74 2
UNIPROTKB|Q9NW08 - symbol:POLR3B "DNA-directed RNA polyme... 728 5.4e-73 2
MGI|MGI:1917678 - symbol:Polr3b "polymerase (RNA) III (DN... 727 7.0e-73 2
RGD|1565311 - symbol:Polr3b "polymerase (RNA) III (DNA di... 727 7.0e-73 2
UNIPROTKB|E1BPX6 - symbol:POLR3B "Uncharacterized protein... 724 1.5e-72 2
UNIPROTKB|E2RHZ2 - symbol:POLR3B "DNA-directed RNA polyme... 724 1.5e-72 2
WB|WBGene00017300 - symbol:rpc-2 species:6239 "Caenorhabd... 408 1.1e-68 2
CGD|CAL0002357 - symbol:orf19.5847 species:5476 "Candida ... 406 1.2e-68 2
ASPGD|ASPL0000054387 - symbol:AN0321 species:162425 "Emer... 375 9.1e-66 3
UNIPROTKB|E1BRJ4 - symbol:POLR3B "DNA-directed RNA polyme... 654 2.2e-65 2
FB|FBgn0004463 - symbol:RpIII128 "RNA polymerase III 128k... 400 8.4e-61 2
GENEDB_PFALCIPARUM|PFL0330c - symbol:PFL0330c "DNA-direct... 381 4.1e-60 2
UNIPROTKB|Q8I5X9 - symbol:PFL0330c "DNA-directed RNA poly... 381 4.1e-60 2
TAIR|locus:2153323 - symbol:NRPC2 "nuclear RNA polymerase... 611 1.3e-58 1
DICTYBASE|DDB_G0288449 - symbol:rpc2 "RNA polymerase III,... 445 4.4e-55 2
TAIR|locus:2095233 - symbol:NRPD2A "nuclear RNA polymeras... 549 2.9e-54 2
POMBASE|SPAC4G9.08c - symbol:rpc2 "DNA-directed RNA polym... 439 1.1e-39 2
UNIPROTKB|C9JZW8 - symbol:POLR2B "DNA-directed RNA polyme... 286 2.8e-24 1
DICTYBASE|DDB_G0293560 - symbol:rpa2 "RNA polymerase I, s... 226 9.0e-23 2
ASPGD|ASPL0000012082 - symbol:AN3933 species:162425 "Emer... 185 2.8e-17 2
WB|WBGene00008781 - symbol:rpoa-2 species:6239 "Caenorhab... 175 3.1e-17 3
UNIPROTKB|C9JMN3 - symbol:POLR2B "DNA-directed RNA polyme... 217 7.9e-17 1
SGD|S000006214 - symbol:RPA135 "RNA polymerase I second l... 185 1.1e-16 2
POMBASE|SPBP23A10.07 - symbol:rpa2 "DNA-directed RNA poly... 175 3.8e-16 2
CGD|CAL0002109 - symbol:RPA135 species:5476 "Candida albi... 173 3.8e-16 2
ZFIN|ZDB-GENE-040426-1598 - symbol:polr1b "polymerase (RN... 161 8.8e-15 2
UNIPROTKB|F1SUA2 - symbol:POLR1B "DNA-directed RNA polyme... 143 1.1e-11 2
MGI|MGI:108014 - symbol:Polr1b "polymerase (RNA) I polype... 128 4.0e-11 2
RGD|620822 - symbol:Polr1b "polymerase (RNA) I polypeptid... 126 5.1e-11 2
UNIPROTKB|O54888 - symbol:Polr1b "DNA-directed RNA polyme... 126 5.1e-11 2
UNIPROTKB|E2REX8 - symbol:POLR1B "DNA-directed RNA polyme... 131 1.2e-10 3
TAIR|locus:2019272 - symbol:NRPA2 "nuclear RNA polymerase... 144 1.4e-10 3
UNIPROTKB|A6QLS0 - symbol:POLR1B "DNA-directed RNA polyme... 129 1.6e-10 2
UNIPROTKB|Q9H9Y6 - symbol:POLR1B "DNA-directed RNA polyme... 128 3.1e-10 3
UNIPROTKB|F5GZX4 - symbol:POLR1B "DNA-directed RNA polyme... 128 3.4e-10 3
UNIPROTKB|F1NRJ5 - symbol:F1NRJ5 "Uncharacterized protein... 123 5.6e-10 2
GENEDB_PFALCIPARUM|PF11_0358 - symbol:PF11_0358 "DNA-dire... 127 1.0e-09 3
UNIPROTKB|Q8II17 - symbol:PF11_0358 "DNA-directed RNA pol... 127 1.0e-09 3
FB|FBgn0003278 - symbol:RpI135 "RNA polymerase I 135kD su... 128 6.1e-09 3
UNIPROTKB|F1NLV9 - symbol:F1NLV9 "DNA-directed RNA polyme... 115 8.1e-09 2
UNIPROTKB|F8VRU2 - symbol:POLR3B "DNA-directed RNA polyme... 132 1.1e-07 1
UNIPROTKB|P0A8V2 - symbol:rpoB "RNA polymerase, beta subu... 107 1.8e-06 2
TIGR_CMR|CBU_0231 - symbol:CBU_0231 "DNA-directed RNA pol... 111 2.4e-06 2
TIGR_CMR|CHY_2318 - symbol:CHY_2318 "DNA-directed RNA pol... 106 1.0e-05 3
TIGR_CMR|CPS_4769 - symbol:CPS_4769 "DNA-directed RNA pol... 106 1.9e-05 2
UNIPROTKB|Q9KV30 - symbol:rpoB "DNA-directed RNA polymera... 103 2.5e-05 2
TIGR_CMR|VC_0328 - symbol:VC_0328 "DNA-directed RNA polym... 103 2.5e-05 2
TIGR_CMR|SO_0224 - symbol:SO_0224 "DNA-directed RNA polym... 108 3.9e-05 2
TIGR_CMR|APH_1024 - symbol:APH_1024 "DNA-directed RNA pol... 119 7.7e-05 2
TIGR_CMR|CJE_0528 - symbol:CJE_0528 "DNA-directed RNA pol... 121 9.7e-05 3
TIGR_CMR|DET_0603 - symbol:DET_0603 "DNA-directed RNA pol... 93 9.8e-05 2
TIGR_CMR|NSE_0678 - symbol:NSE_0678 "DNA-directed RNA pol... 122 0.00012 2
TIGR_CMR|BA_0102 - symbol:BA_0102 "DNA-directed RNA polym... 100 0.00012 3
UNIPROTKB|F8W898 - symbol:POLR1B "DNA-directed RNA polyme... 128 0.00025 2
TIGR_CMR|GSU_2863 - symbol:GSU_2863 "DNA-directed RNA pol... 106 0.00027 2
UNIPROTKB|P60281 - symbol:rpoB "DNA-directed RNA polymera... 102 0.00035 3
TIGR_CMR|SPO_3508 - symbol:SPO_3508 "DNA-directed RNA pol... 108 0.00043 2
UNIPROTKB|P0A680 - symbol:rpoB "DNA-directed RNA polymera... 102 0.00051 2
UNIPROTKB|P0C501 - symbol:rpoB "DNA-directed RNA polymera... 110 0.00062 2
UNIPROTKB|P0C502 - symbol:rpoB "DNA-directed RNA polymera... 110 0.00062 2
UNIPROTKB|P0C503 - symbol:rpoB "DNA-directed RNA polymera... 110 0.00062 2
UNIPROTKB|Q6ENI4 - symbol:rpoB "DNA-directed RNA polymera... 110 0.00062 2
>FB|FBgn0262955 [details] [associations]
symbol:RpII140 "RNA polymerase II 140kD subunit" species:7227
"Drosophila melanogaster" [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=ISS;NAS;IDA] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=ISS;NAS] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS;NAS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0032549 "ribonucleoside
binding" evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 PANTHER:PTHR20856 EMBL:AE014297 GO:GO:0046872
GO:GO:0003677 GO:GO:0006366 GO:GO:0003899 GO:GO:0005665
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03010 OMA:IMIVFRA GeneTree:ENSGT00690000102234 EMBL:X05709
EMBL:BT003265 EMBL:M62972 PIR:A27826 RefSeq:NP_476706.1
UniGene:Dm.6926 ProteinModelPortal:P08266 DIP:DIP-17498N
MINT:MINT-1578011 STRING:P08266 PaxDb:P08266
EnsemblMetazoa:FBtr0082892 GeneID:41721 KEGG:dme:Dmel_CG3180
CTD:41721 FlyBase:FBgn0262955 InParanoid:P08266 OrthoDB:EOG4G1JX8
PhylomeDB:P08266 ChiTaRS:RpII140 GenomeRNAi:41721 NextBio:825231
Bgee:P08266 GermOnline:CG3180 Uniprot:P08266
Length = 1176
Score = 1800 (638.7 bits), Expect = 2.6e-312, Sum P(2) = 2.6e-312
Identities = 344/368 (93%), Positives = 357/368 (97%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSP I+LQAEAQHTS EVET
Sbjct: 22 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPAIELQAEAQHTSGEVET 81
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PPR+ LKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKT +G +PV
Sbjct: 82 PPRFSLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTKNVEGLDPV 141
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRSTYCLL+ LTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 142 ETQHQKTFIGKIPIMLRSTYCLLSQLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 201
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVFSMKD KYA+KTEIRSCLEHSSRPTSTLWVNMMARG Q++KKSAIGQRIIAIL
Sbjct: 202 ATNTVYVFSMKDGKYAFKTEIRSCLEHSSRPTSTLWVNMMARGSQNIKKSAIGQRIIAIL 261
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFV+QEQNVALNF
Sbjct: 262 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVVQEQNVALNF 321
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IGARGARPGVTK++RIKYA+EILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR
Sbjct: 322 IGARGARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 381
Query: 361 ELDDRDHY 368
ELDDRDHY
Sbjct: 382 ELDDRDHY 389
Score = 1220 (434.5 bits), Expect = 2.6e-312, Sum P(2) = 2.6e-312
Identities = 242/279 (86%), Positives = 248/279 (88%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA L R + VRMY QKFIDRGKDFNLELAIKT IITDGLRYSLATGNWGDQKK
Sbjct: 400 LLAFLFRGLFKNLMKEVRMYTQKFIDRGKDFNLELAIKTNIITDGLRYSLATGNWGDQKK 459
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
AHQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQLHNTLWGM+CPAETPEGA
Sbjct: 460 AHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGA 519
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR
Sbjct: 520 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 579
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSXXXXXXXXXXXXHTDAGRICRPLLIAENGSLLLKKR 592
DPEQLM TLRKLRRQMDIIVSEVS +TDAGRICRPLLI ENGSLLLKK
Sbjct: 580 DPEQLMATLRKLRRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGSLLLKKT 639
Query: 593 HIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
H++ LKERDYNNY WQVLV SGVVEYIDTLEEET MIAM
Sbjct: 640 HVEMLKERDYNNYSWQVLVASGVVEYIDTLEEETVMIAM 678
Score = 130 (50.8 bits), Expect = 5.3e-197, Sum P(2) = 5.3e-197
Identities = 27/41 (65%), Positives = 31/41 (75%)
Query: 618 YIDTLEEETTMIAMWQVLVQSGVVEYIDTLEEETTMIAMSP 658
+++ L+E WQVLV SGVVEYIDTLEEET MIAMSP
Sbjct: 640 HVEMLKERDYNNYSWQVLVASGVVEYIDTLEEETVMIAMSP 680
Score = 45 (20.9 bits), Expect = 0.00051, Sum P(2) = 0.00051
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 357 LGRRELDDRDHYVRMYAQKFIDRGKDFNLE 386
L R++LD D +++M Q+ ++ L+
Sbjct: 40 LVRQQLDSFDEFIQMSVQRIVEDSPAIELQ 69
>UNIPROTKB|A5PJW8 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase" species:9913
"Bos taurus" [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=IEA] [GO:0004672 "protein kinase
activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 GO:GO:0004672 GO:GO:0006366 GO:GO:0003899
GO:GO:0005665 eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03010 OMA:IMIVFRA
GeneTree:ENSGT00690000102234 HOGENOM:HOG000222962 CTD:5431
HOVERGEN:HBG017744 OrthoDB:EOG4JQ3WQ EMBL:DAAA02017743
EMBL:BC142267 IPI:IPI00701366 RefSeq:NP_001092552.1
UniGene:Bt.103151 STRING:A5PJW8 Ensembl:ENSBTAT00000025800
GeneID:538184 KEGG:bta:538184 InParanoid:A5PJW8 NextBio:20877300
Uniprot:A5PJW8
Length = 1174
Score = 1752 (621.8 bits), Expect = 1.2e-303, Sum P(2) = 1.2e-303
Identities = 328/368 (89%), Positives = 354/368 (96%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVI++YFDEKGLVRQQLDSFDEFIQMSVQRIVED+P IDLQAEAQH S EVE
Sbjct: 21 LWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEE 80
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PPRYLLKFEQIYLSKPTHWE+DG+PSPMMPNEARLRNLTYSAPLYVDITKTV+++GEE +
Sbjct: 81 PPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGEEQL 140
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRSTYCLLNGLTDRDL ELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 141 QTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKM 200
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVF+ KDSKYAY E RSCLE+SSRPTST+WV+M+ARGGQ KKSAIGQRI+A L
Sbjct: 201 ATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATL 260
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQE+PI+IVFRALGFV+DRDILEHIIYDF+DPEMMEMVKPSLDEAFVIQEQNVALNF
Sbjct: 261 PYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNF 320
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IG+RGA+PGVTKE+RIKYA+E+LQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRR
Sbjct: 321 IGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRR 380
Query: 361 ELDDRDHY 368
ELDDRDHY
Sbjct: 381 ELDDRDHY 388
Score = 1186 (422.6 bits), Expect = 1.2e-303, Sum P(2) = 1.2e-303
Identities = 236/294 (80%), Positives = 251/294 (85%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA L R + VR+YAQKFIDRGKDFNLELAIKT+II+DGL+YSLATGNWGDQKK
Sbjct: 399 LLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKK 458
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
AHQARAGVSQVLNRLTFAS+LSHLRR+NSPIGRDGKLAKPRQLHNTLWGM+CPAETPEG
Sbjct: 459 AHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGH 518
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEI+P+AIADATKIFVNGCWVGIH+
Sbjct: 519 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHK 578
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSXXXXXXXXXXXXHTDAGRICRPLLIAENGSLLLKKR 592
DPEQLM TLRKLRRQMDIIVSEVS +TDAGRICRPLLI E LLLKKR
Sbjct: 579 DPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKR 638
Query: 593 HIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDT 646
HID LKER+YNNY WQ LV SGVVEYIDTLEEET M+AM +Q V Y T
Sbjct: 639 HIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKEVAYCST 692
Score = 123 (48.4 bits), Expect = 3.5e-191, Sum P(2) = 3.5e-191
Identities = 26/41 (63%), Positives = 30/41 (73%)
Query: 618 YIDTLEEETTMIAMWQVLVQSGVVEYIDTLEEETTMIAMSP 658
+ID L+E WQ LV SGVVEYIDTLEEET M+AM+P
Sbjct: 639 HIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTP 679
>UNIPROTKB|E2RNN5 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=IEA] [GO:0004672 "protein
kinase activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 GO:GO:0004672 GO:GO:0006366 GO:GO:0003899
GO:GO:0005665 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03010 OMA:IMIVFRA GeneTree:ENSGT00690000102234 CTD:5431
EMBL:AAEX03009093 RefSeq:XP_532382.2 ProteinModelPortal:E2RNN5
Ensembl:ENSCAFT00000003641 GeneID:475152 KEGG:cfa:475152
Uniprot:E2RNN5
Length = 1174
Score = 1752 (621.8 bits), Expect = 1.2e-303, Sum P(2) = 1.2e-303
Identities = 328/368 (89%), Positives = 354/368 (96%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVI++YFDEKGLVRQQLDSFDEFIQMSVQRIVED+P IDLQAEAQH S EVE
Sbjct: 21 LWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEE 80
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PPRYLLKFEQIYLSKPTHWE+DG+PSPMMPNEARLRNLTYSAPLYVDITKTV+++GEE +
Sbjct: 81 PPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGEEQL 140
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRSTYCLLNGLTDRDL ELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 141 QTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKM 200
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVF+ KDSKYAY E RSCLE+SSRPTST+WV+M+ARGGQ KKSAIGQRI+A L
Sbjct: 201 ATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATL 260
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQE+PI+IVFRALGFV+DRDILEHIIYDF+DPEMMEMVKPSLDEAFVIQEQNVALNF
Sbjct: 261 PYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNF 320
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IG+RGA+PGVTKE+RIKYA+E+LQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRR
Sbjct: 321 IGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRR 380
Query: 361 ELDDRDHY 368
ELDDRDHY
Sbjct: 381 ELDDRDHY 388
Score = 1186 (422.6 bits), Expect = 1.2e-303, Sum P(2) = 1.2e-303
Identities = 236/294 (80%), Positives = 251/294 (85%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA L R + VR+YAQKFIDRGKDFNLELAIKT+II+DGL+YSLATGNWGDQKK
Sbjct: 399 LLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKK 458
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
AHQARAGVSQVLNRLTFAS+LSHLRR+NSPIGRDGKLAKPRQLHNTLWGM+CPAETPEG
Sbjct: 459 AHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGH 518
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEI+P+AIADATKIFVNGCWVGIH+
Sbjct: 519 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHK 578
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSXXXXXXXXXXXXHTDAGRICRPLLIAENGSLLLKKR 592
DPEQLM TLRKLRRQMDIIVSEVS +TDAGRICRPLLI E LLLKKR
Sbjct: 579 DPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKR 638
Query: 593 HIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDT 646
HID LKER+YNNY WQ LV SGVVEYIDTLEEET M+AM +Q V Y T
Sbjct: 639 HIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKEVAYCST 692
Score = 123 (48.4 bits), Expect = 3.5e-191, Sum P(2) = 3.5e-191
Identities = 26/41 (63%), Positives = 30/41 (73%)
Query: 618 YIDTLEEETTMIAMWQVLVQSGVVEYIDTLEEETTMIAMSP 658
+ID L+E WQ LV SGVVEYIDTLEEET M+AM+P
Sbjct: 639 HIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTP 679
>UNIPROTKB|C9J2Y9 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0005634 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
EMBL:AC069307 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HGNC:HGNC:9188 IPI:IPI00894141 ProteinModelPortal:C9J2Y9
STRING:C9J2Y9 Ensembl:ENST00000441246 ArrayExpress:C9J2Y9
Bgee:C9J2Y9 Uniprot:C9J2Y9
Length = 1167
Score = 1752 (621.8 bits), Expect = 1.2e-303, Sum P(2) = 1.2e-303
Identities = 328/368 (89%), Positives = 354/368 (96%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVI++YFDEKGLVRQQLDSFDEFIQMSVQRIVED+P IDLQAEAQH S EVE
Sbjct: 14 LWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEE 73
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PPRYLLKFEQIYLSKPTHWE+DG+PSPMMPNEARLRNLTYSAPLYVDITKTV+++GEE +
Sbjct: 74 PPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGEEQL 133
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRSTYCLLNGLTDRDL ELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 134 QTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKM 193
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVF+ KDSKYAY E RSCLE+SSRPTST+WV+M+ARGGQ KKSAIGQRI+A L
Sbjct: 194 ATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATL 253
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQE+PI+IVFRALGFV+DRDILEHIIYDF+DPEMMEMVKPSLDEAFVIQEQNVALNF
Sbjct: 254 PYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNF 313
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IG+RGA+PGVTKE+RIKYA+E+LQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRR
Sbjct: 314 IGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRR 373
Query: 361 ELDDRDHY 368
ELDDRDHY
Sbjct: 374 ELDDRDHY 381
Score = 1186 (422.6 bits), Expect = 1.2e-303, Sum P(2) = 1.2e-303
Identities = 236/294 (80%), Positives = 251/294 (85%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA L R + VR+YAQKFIDRGKDFNLELAIKT+II+DGL+YSLATGNWGDQKK
Sbjct: 392 LLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKK 451
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
AHQARAGVSQVLNRLTFAS+LSHLRR+NSPIGRDGKLAKPRQLHNTLWGM+CPAETPEG
Sbjct: 452 AHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGH 511
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEI+P+AIADATKIFVNGCWVGIH+
Sbjct: 512 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHK 571
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSXXXXXXXXXXXXHTDAGRICRPLLIAENGSLLLKKR 592
DPEQLM TLRKLRRQMDIIVSEVS +TDAGRICRPLLI E LLLKKR
Sbjct: 572 DPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKR 631
Query: 593 HIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDT 646
HID LKER+YNNY WQ LV SGVVEYIDTLEEET M+AM +Q V Y T
Sbjct: 632 HIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKEVAYCST 685
Score = 123 (48.4 bits), Expect = 3.5e-191, Sum P(2) = 3.5e-191
Identities = 26/41 (63%), Positives = 30/41 (73%)
Query: 618 YIDTLEEETTMIAMWQVLVQSGVVEYIDTLEEETTMIAMSP 658
+ID L+E WQ LV SGVVEYIDTLEEET M+AM+P
Sbjct: 632 HIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTP 672
>UNIPROTKB|P30876 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase II subunit RPB2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0004672 "protein kinase activity" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IDA;TAS] [GO:0005665 "DNA-directed
RNA polymerase II, core complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=TAS] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=TAS] [GO:0006370
"7-methylguanosine mRNA capping" evidence=TAS] [GO:0008380 "RNA
splicing" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0050434
"positive regulation of viral transcription" evidence=TAS]
[GO:0006468 "protein phosphorylation" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_216 Reactome:REACT_71
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 Reactome:REACT_116125 GO:GO:0016032 GO:GO:0046872
GO:GO:0003677 Reactome:REACT_1675 GO:GO:0006468 EMBL:CH471057
GO:GO:0006368 GO:GO:0006367 GO:GO:0000398 Reactome:REACT_1788
GO:GO:0006370 GO:GO:0050434 GO:GO:0006283 Reactome:REACT_1892
GO:GO:0003899 GO:GO:0005665 eggNOG:COG0085 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 KO:K03010 OMA:IMIVFRA
HOGENOM:HOG000222962 EMBL:X63563 EMBL:AK289823 EMBL:BC023503
EMBL:AF055028 IPI:IPI00027808 PIR:S28976 RefSeq:NP_000929.1
UniGene:Hs.602757 ProteinModelPortal:P30876 DIP:DIP-32910N
IntAct:P30876 MINT:MINT-1216897 STRING:P30876 PhosphoSite:P30876
DMDM:401012 PaxDb:P30876 PeptideAtlas:P30876 PRIDE:P30876
Ensembl:ENST00000314595 Ensembl:ENST00000381227 GeneID:5431
KEGG:hsa:5431 UCSC:uc003hcl.1 CTD:5431 GeneCards:GC04P057760
HGNC:HGNC:9188 HPA:HPA037506 MIM:180661 neXtProt:NX_P30876
PharmGKB:PA33508 HOVERGEN:HBG017744 InParanoid:P30876
OrthoDB:EOG4JQ3WQ PhylomeDB:P30876 GenomeRNAi:5431 NextBio:21013
ArrayExpress:P30876 Bgee:P30876 CleanEx:HS_POLR2B
Genevestigator:P30876 GermOnline:ENSG00000047315 Uniprot:P30876
Length = 1174
Score = 1752 (621.8 bits), Expect = 1.2e-303, Sum P(2) = 1.2e-303
Identities = 328/368 (89%), Positives = 354/368 (96%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVI++YFDEKGLVRQQLDSFDEFIQMSVQRIVED+P IDLQAEAQH S EVE
Sbjct: 21 LWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEE 80
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PPRYLLKFEQIYLSKPTHWE+DG+PSPMMPNEARLRNLTYSAPLYVDITKTV+++GEE +
Sbjct: 81 PPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGEEQL 140
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRSTYCLLNGLTDRDL ELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 141 QTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKM 200
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVF+ KDSKYAY E RSCLE+SSRPTST+WV+M+ARGGQ KKSAIGQRI+A L
Sbjct: 201 ATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATL 260
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQE+PI+IVFRALGFV+DRDILEHIIYDF+DPEMMEMVKPSLDEAFVIQEQNVALNF
Sbjct: 261 PYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNF 320
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IG+RGA+PGVTKE+RIKYA+E+LQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRR
Sbjct: 321 IGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRR 380
Query: 361 ELDDRDHY 368
ELDDRDHY
Sbjct: 381 ELDDRDHY 388
Score = 1186 (422.6 bits), Expect = 1.2e-303, Sum P(2) = 1.2e-303
Identities = 236/294 (80%), Positives = 251/294 (85%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA L R + VR+YAQKFIDRGKDFNLELAIKT+II+DGL+YSLATGNWGDQKK
Sbjct: 399 LLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKK 458
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
AHQARAGVSQVLNRLTFAS+LSHLRR+NSPIGRDGKLAKPRQLHNTLWGM+CPAETPEG
Sbjct: 459 AHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGH 518
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEI+P+AIADATKIFVNGCWVGIH+
Sbjct: 519 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHK 578
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSXXXXXXXXXXXXHTDAGRICRPLLIAENGSLLLKKR 592
DPEQLM TLRKLRRQMDIIVSEVS +TDAGRICRPLLI E LLLKKR
Sbjct: 579 DPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKR 638
Query: 593 HIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDT 646
HID LKER+YNNY WQ LV SGVVEYIDTLEEET M+AM +Q V Y T
Sbjct: 639 HIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKEVAYCST 692
Score = 123 (48.4 bits), Expect = 3.5e-191, Sum P(2) = 3.5e-191
Identities = 26/41 (63%), Positives = 30/41 (73%)
Query: 618 YIDTLEEETTMIAMWQVLVQSGVVEYIDTLEEETTMIAMSP 658
+ID L+E WQ LV SGVVEYIDTLEEET M+AM+P
Sbjct: 639 HIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTP 679
>UNIPROTKB|I3LGP4 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase" species:9823
"Sus scrofa" [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=IEA] [GO:0004672 "protein kinase
activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 GO:GO:0004672 GO:GO:0006366 GO:GO:0003899
GO:GO:0005665 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03010 OMA:IMIVFRA GeneTree:ENSGT00690000102234 CTD:5431
EMBL:FP476021 EMBL:CU984592 RefSeq:XP_003129085.2 UniGene:Ssc.55326
Ensembl:ENSSSCT00000023257 GeneID:397001 KEGG:ssc:397001
Uniprot:I3LGP4
Length = 1167
Score = 1752 (621.8 bits), Expect = 1.2e-303, Sum P(2) = 1.2e-303
Identities = 328/368 (89%), Positives = 354/368 (96%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVI++YFDEKGLVRQQLDSFDEFIQMSVQRIVED+P IDLQAEAQH S EVE
Sbjct: 14 LWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEE 73
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PPRYLLKFEQIYLSKPTHWE+DG+PSPMMPNEARLRNLTYSAPLYVDITKTV+++GEE +
Sbjct: 74 PPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGEEQL 133
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRSTYCLLNGLTDRDL ELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 134 QTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKM 193
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVF+ KDSKYAY E RSCLE+SSRPTST+WV+M+ARGGQ KKSAIGQRI+A L
Sbjct: 194 ATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATL 253
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQE+PI+IVFRALGFV+DRDILEHIIYDF+DPEMMEMVKPSLDEAFVIQEQNVALNF
Sbjct: 254 PYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNF 313
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IG+RGA+PGVTKE+RIKYA+E+LQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRR
Sbjct: 314 IGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRR 373
Query: 361 ELDDRDHY 368
ELDDRDHY
Sbjct: 374 ELDDRDHY 381
Score = 1186 (422.6 bits), Expect = 1.2e-303, Sum P(2) = 1.2e-303
Identities = 236/294 (80%), Positives = 251/294 (85%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA L R + VR+YAQKFIDRGKDFNLELAIKT+II+DGL+YSLATGNWGDQKK
Sbjct: 392 LLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKK 451
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
AHQARAGVSQVLNRLTFAS+LSHLRR+NSPIGRDGKLAKPRQLHNTLWGM+CPAETPEG
Sbjct: 452 AHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGH 511
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEI+P+AIADATKIFVNGCWVGIH+
Sbjct: 512 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHK 571
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSXXXXXXXXXXXXHTDAGRICRPLLIAENGSLLLKKR 592
DPEQLM TLRKLRRQMDIIVSEVS +TDAGRICRPLLI E LLLKKR
Sbjct: 572 DPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKR 631
Query: 593 HIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDT 646
HID LKER+YNNY WQ LV SGVVEYIDTLEEET M+AM +Q V Y T
Sbjct: 632 HIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKEVAYCST 685
Score = 123 (48.4 bits), Expect = 3.5e-191, Sum P(2) = 3.5e-191
Identities = 26/41 (63%), Positives = 30/41 (73%)
Query: 618 YIDTLEEETTMIAMWQVLVQSGVVEYIDTLEEETTMIAMSP 658
+ID L+E WQ LV SGVVEYIDTLEEET M+AM+P
Sbjct: 632 HIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTP 672
>MGI|MGI:2388280 [details] [associations]
symbol:Polr2b "polymerase (RNA) II (DNA directed)
polypeptide B" species:10090 "Mus musculus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IC;ISO] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0006468 "protein phosphorylation" evidence=ISO]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 MGI:MGI:2388280 PANTHER:PTHR20856 GO:GO:0046872
GO:GO:0003677 GO:GO:0003682 GO:GO:0004672 GO:GO:0006366
GO:GO:0003899 GO:GO:0005665 eggNOG:COG0085 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 KO:K03010 OMA:IMIVFRA
GeneTree:ENSGT00690000102234 HOGENOM:HOG000222962 CTD:5431
HOVERGEN:HBG017744 OrthoDB:EOG4JQ3WQ EMBL:BC038472 IPI:IPI00320034
RefSeq:NP_722493.2 UniGene:Mm.273217 ProteinModelPortal:Q8CFI7
DIP:DIP-57023N IntAct:Q8CFI7 STRING:Q8CFI7 PhosphoSite:Q8CFI7
PaxDb:Q8CFI7 PRIDE:Q8CFI7 Ensembl:ENSMUST00000031167 GeneID:231329
KEGG:mmu:231329 UCSC:uc008xwe.2 InParanoid:Q8CFI7 ChiTaRS:POLR2B
NextBio:380519 Bgee:Q8CFI7 CleanEx:MM_POLR2B Genevestigator:Q8CFI7
GermOnline:ENSMUSG00000029250 Uniprot:Q8CFI7
Length = 1174
Score = 1752 (621.8 bits), Expect = 1.2e-303, Sum P(2) = 1.2e-303
Identities = 328/368 (89%), Positives = 354/368 (96%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVI++YFDEKGLVRQQLDSFDEFIQMSVQRIVED+P IDLQAEAQH S EVE
Sbjct: 21 LWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEE 80
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PPRYLLKFEQIYLSKPTHWE+DG+PSPMMPNEARLRNLTYSAPLYVDITKTV+++GEE +
Sbjct: 81 PPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGEEQL 140
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRSTYCLLNGLTDRDL ELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 141 QTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKM 200
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVF+ KDSKYAY E RSCLE+SSRPTST+WV+M+ARGGQ KKSAIGQRI+A L
Sbjct: 201 ATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATL 260
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQE+PI+IVFRALGFV+DRDILEHIIYDF+DPEMMEMVKPSLDEAFVIQEQNVALNF
Sbjct: 261 PYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNF 320
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IG+RGA+PGVTKE+RIKYA+E+LQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRR
Sbjct: 321 IGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRR 380
Query: 361 ELDDRDHY 368
ELDDRDHY
Sbjct: 381 ELDDRDHY 388
Score = 1186 (422.6 bits), Expect = 1.2e-303, Sum P(2) = 1.2e-303
Identities = 236/294 (80%), Positives = 251/294 (85%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA L R + VR+YAQKFIDRGKDFNLELAIKT+II+DGL+YSLATGNWGDQKK
Sbjct: 399 LLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKK 458
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
AHQARAGVSQVLNRLTFAS+LSHLRR+NSPIGRDGKLAKPRQLHNTLWGM+CPAETPEG
Sbjct: 459 AHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGH 518
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEI+P+AIADATKIFVNGCWVGIH+
Sbjct: 519 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHK 578
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSXXXXXXXXXXXXHTDAGRICRPLLIAENGSLLLKKR 592
DPEQLM TLRKLRRQMDIIVSEVS +TDAGRICRPLLI E LLLKKR
Sbjct: 579 DPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKR 638
Query: 593 HIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDT 646
HID LKER+YNNY WQ LV SGVVEYIDTLEEET M+AM +Q V Y T
Sbjct: 639 HIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKEVAYCST 692
Score = 123 (48.4 bits), Expect = 3.5e-191, Sum P(2) = 3.5e-191
Identities = 26/41 (63%), Positives = 30/41 (73%)
Query: 618 YIDTLEEETTMIAMWQVLVQSGVVEYIDTLEEETTMIAMSP 658
+ID L+E WQ LV SGVVEYIDTLEEET M+AM+P
Sbjct: 639 HIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTP 679
>RGD|1309477 [details] [associations]
symbol:Polr2b "polymerase (RNA) II (DNA directed) polypeptide B"
species:10116 "Rattus norvegicus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA;ISO] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0004672 "protein kinase
activity" evidence=IEA;ISO] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=ISO] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IEA;ISO]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA;ISO] [GO:0006468 "protein phosphorylation"
evidence=ISO] [GO:0008150 "biological_process" evidence=ND]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 RGD:1309477 PANTHER:PTHR20856 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03010 GeneTree:ENSGT00690000102234 CTD:5431
EMBL:CH473981 RefSeq:NP_001099472.1 UniGene:Rn.153952
Ensembl:ENSRNOT00000039252 GeneID:289561 KEGG:rno:289561
NextBio:629984 Uniprot:G3V8Y5
Length = 1174
Score = 1752 (621.8 bits), Expect = 1.2e-303, Sum P(2) = 1.2e-303
Identities = 328/368 (89%), Positives = 354/368 (96%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVI++YFDEKGLVRQQLDSFDEFIQMSVQRIVED+P IDLQAEAQH S EVE
Sbjct: 21 LWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEE 80
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PPRYLLKFEQIYLSKPTHWE+DG+PSPMMPNEARLRNLTYSAPLYVDITKTV+++GEE +
Sbjct: 81 PPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGEEQL 140
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRSTYCLLNGLTDRDL ELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 141 QTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKM 200
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVF+ KDSKYAY E RSCLE+SSRPTST+WV+M+ARGGQ KKSAIGQRI+A L
Sbjct: 201 ATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATL 260
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQE+PI+IVFRALGFV+DRDILEHIIYDF+DPEMMEMVKPSLDEAFVIQEQNVALNF
Sbjct: 261 PYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNF 320
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IG+RGA+PGVTKE+RIKYA+E+LQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRR
Sbjct: 321 IGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRR 380
Query: 361 ELDDRDHY 368
ELDDRDHY
Sbjct: 381 ELDDRDHY 388
Score = 1186 (422.6 bits), Expect = 1.2e-303, Sum P(2) = 1.2e-303
Identities = 236/294 (80%), Positives = 251/294 (85%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA L R + VR+YAQKFIDRGKDFNLELAIKT+II+DGL+YSLATGNWGDQKK
Sbjct: 399 LLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKK 458
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
AHQARAGVSQVLNRLTFAS+LSHLRR+NSPIGRDGKLAKPRQLHNTLWGM+CPAETPEG
Sbjct: 459 AHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGH 518
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEI+P+AIADATKIFVNGCWVGIH+
Sbjct: 519 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHK 578
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSXXXXXXXXXXXXHTDAGRICRPLLIAENGSLLLKKR 592
DPEQLM TLRKLRRQMDIIVSEVS +TDAGRICRPLLI E LLLKKR
Sbjct: 579 DPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKR 638
Query: 593 HIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDT 646
HID LKER+YNNY WQ LV SGVVEYIDTLEEET M+AM +Q V Y T
Sbjct: 639 HIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKEVAYCST 692
Score = 123 (48.4 bits), Expect = 3.5e-191, Sum P(2) = 3.5e-191
Identities = 26/41 (63%), Positives = 30/41 (73%)
Query: 618 YIDTLEEETTMIAMWQVLVQSGVVEYIDTLEEETTMIAMSP 658
+ID L+E WQ LV SGVVEYIDTLEEET M+AM+P
Sbjct: 639 HIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTP 679
>UNIPROTKB|F1NCB0 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 GeneTree:ENSGT00690000102234
EMBL:AADN02009110 EMBL:AADN02009111 IPI:IPI00823005
Ensembl:ENSGALT00000037965 ArrayExpress:F1NCB0 Uniprot:F1NCB0
Length = 1174
Score = 1746 (619.7 bits), Expect = 6.8e-303, Sum P(2) = 6.8e-303
Identities = 326/368 (88%), Positives = 354/368 (96%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVI++YFDEKGLVRQQLDSFDEFIQMSVQRIVED+P IDLQAEAQH + EVE
Sbjct: 21 LWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHATGEVEE 80
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PPRYLLKFEQIYLSKPTHWE+DG+PSPMMPNEARLRNLTYSAPLYVDITKTV+++GE+ +
Sbjct: 81 PPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGEDQL 140
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRSTYCLLNGLTDRDL ELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 141 QTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKM 200
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVF+ KDSKYAY E RSCLE+SSRPTST+WV+M+ARGGQ KKSAIGQRI+A L
Sbjct: 201 ATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATL 260
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQE+PI+IVFRALGFV+DRDILEHIIYDF+DPEMMEMVKPSLDEAFVIQEQNVALNF
Sbjct: 261 PYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNF 320
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IG+RGA+PGVTKE+RIKYA+E+LQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRR
Sbjct: 321 IGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRR 380
Query: 361 ELDDRDHY 368
ELDDRDHY
Sbjct: 381 ELDDRDHY 388
Score = 1185 (422.2 bits), Expect = 6.8e-303, Sum P(2) = 6.8e-303
Identities = 236/294 (80%), Positives = 251/294 (85%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA L R + VR+YAQKFIDRGKDFNLELAIKT+II+DGL+YSLATGNWGDQKK
Sbjct: 399 LLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKK 458
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
AHQARAGVSQVLNRLTFAS+LSHLRR+NSPIGRDGKLAKPRQLHNTLWGM+CPAETPEG
Sbjct: 459 AHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGH 518
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEI+P+AIADATKIFVNGCWVGIH+
Sbjct: 519 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHK 578
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSXXXXXXXXXXXXHTDAGRICRPLLIAENGSLLLKKR 592
DPEQLM TLRKLRRQMDIIVSEVS +TDAGRICRPLLI E LLLKKR
Sbjct: 579 DPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKR 638
Query: 593 HIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDT 646
HID LKER+YNNY WQ LV SGVVEYIDTLEEET M+AM +Q V Y T
Sbjct: 639 HIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKGVAYCST 692
Score = 123 (48.4 bits), Expect = 1.5e-190, Sum P(2) = 1.5e-190
Identities = 26/41 (63%), Positives = 30/41 (73%)
Query: 618 YIDTLEEETTMIAMWQVLVQSGVVEYIDTLEEETTMIAMSP 658
+ID L+E WQ LV SGVVEYIDTLEEET M+AM+P
Sbjct: 639 HIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTP 679
Score = 50 (22.7 bits), Expect = 0.00086, Sum P(2) = 0.00086
Identities = 16/65 (24%), Positives = 29/65 (44%)
Query: 357 LGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIK--TKIITDGLRYSLATGNWGDQKKAH 414
L R++LD D +++M Q+ ++ +L+ + T + + RY L K H
Sbjct: 39 LVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHATGEVEEPPRYLLKFEQIYLSKPTH 98
Query: 415 QARAG 419
R G
Sbjct: 99 WERDG 103
>ZFIN|ZDB-GENE-041008-1 [details] [associations]
symbol:polr2b "polymerase (RNA) II (DNA directed)
polypeptide B" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 ZFIN:ZDB-GENE-041008-1
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
GeneTree:ENSGT00690000102234 EMBL:AL954718 EMBL:CABZ01048450
EMBL:CABZ01048451 IPI:IPI00944344 Ensembl:ENSDART00000124865
ArrayExpress:F1QXY8 Bgee:F1QXY8 Uniprot:F1QXY8
Length = 1117
Score = 1748 (620.4 bits), Expect = 2.9e-302, Sum P(2) = 2.9e-302
Identities = 327/368 (88%), Positives = 354/368 (96%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVI++YFDEKGLVRQQLDSFDEFIQMSVQRIVED+P IDLQAEAQHTS EVE
Sbjct: 21 LWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHTSGEVEE 80
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PPRYLLKFEQIYLSKPTHWE+DG+PSPMMPNEARLRNLTYSAPLYVDITKT+++ GEE
Sbjct: 81 PPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTIIKDGEEQQ 140
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRSTYCLL+GLTDRDL ELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 141 QTQHQKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKM 200
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVF+ KDSKYAY E RSCLE+SSRPTST+WV+MMARGGQ +KKSAIGQRI++ L
Sbjct: 201 ATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMMARGGQGVKKSAIGQRIVSTL 260
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYI+QE+PI+IVFRALGFV+DRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF
Sbjct: 261 PYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 320
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IG+RGA+PGVTKERRIKYA+E+LQKE+LPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRR
Sbjct: 321 IGSRGAKPGVTKERRIKYAKEVLQKEVLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRR 380
Query: 361 ELDDRDHY 368
ELDDRDHY
Sbjct: 381 ELDDRDHY 388
Score = 1177 (419.4 bits), Expect = 2.9e-302, Sum P(2) = 2.9e-302
Identities = 234/294 (79%), Positives = 250/294 (85%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA L R + +R+YAQKFIDRGKDFNLELAIKT+II+DGL+YSLATGNWGD KK
Sbjct: 399 LLAFLFRGMFKNLLKEIRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDVKK 458
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
AHQARAGVSQVLNRLTFAS+LSHLRRVNSPIGRDGKLAKPRQLHNTLWGM+CPAETPEG
Sbjct: 459 AHQARAGVSQVLNRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGH 518
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEI+P+AIADATKIFVNGCWVGIH+
Sbjct: 519 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHK 578
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSXXXXXXXXXXXXHTDAGRICRPLLIAENGSLLLKKR 592
DPEQLM TLRKLRRQMDIIVSEVS +TDAGRICRPLLI E LLLK+R
Sbjct: 579 DPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRR 638
Query: 593 HIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDT 646
HID LKER+YNNY WQ LV SGVVEYIDTLEEET M+AM +Q V Y T
Sbjct: 639 HIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKGVAYCST 692
Score = 123 (48.4 bits), Expect = 9.1e-191, Sum P(2) = 9.1e-191
Identities = 26/41 (63%), Positives = 30/41 (73%)
Query: 618 YIDTLEEETTMIAMWQVLVQSGVVEYIDTLEEETTMIAMSP 658
+ID L+E WQ LV SGVVEYIDTLEEET M+AM+P
Sbjct: 639 HIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTP 679
Score = 51 (23.0 bits), Expect = 0.00061, Sum P(2) = 0.00061
Identities = 26/116 (22%), Positives = 47/116 (40%)
Query: 357 LGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIK--TKIITDGLRYSLATGNWGDQKKAH 414
L R++LD D +++M Q+ ++ +L+ + + + + RY L K H
Sbjct: 39 LVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHTSGEVEEPPRYLLKFEQIYLSKPTH 98
Query: 415 QARAGVSQV-------LNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMI 463
R G L LT+++ L + I +DG+ + Q T G I
Sbjct: 99 WERDGAPSPMMPNEARLRNLTYSAPL--YVDITKTIIKDGEEQQQTQHQKTFIGKI 152
>UNIPROTKB|F1P4F2 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0004672 "protein kinase activity"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 GO:GO:0004672 GO:GO:0006366 GO:GO:0003899
GO:GO:0005665 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
OMA:IMIVFRA GeneTree:ENSGT00690000102234 EMBL:AADN02009110
EMBL:AADN02009111 IPI:IPI00580164 Ensembl:ENSGALT00000018572
ArrayExpress:F1P4F2 Uniprot:F1P4F2
Length = 1176
Score = 1737 (616.5 bits), Expect = 6.1e-302, Sum P(2) = 6.1e-302
Identities = 326/369 (88%), Positives = 354/369 (95%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVI++YFDEKGLVRQQLDSFDEFIQMSVQRIVED+P IDLQAEAQH + EVE
Sbjct: 22 LWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHATGEVEE 81
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
PPRYLLKFEQIYLSKPTHWE+DG+PSPMMPNEARLRNLTYSAPLYVDITKTV+++GE+ +
Sbjct: 82 PPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGEDQL 141
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
TQHQK+FIGKIPIMLRSTYCLLNGLTDRDL ELNECPLDPGGYFIINGSEKVLIAQEKM
Sbjct: 142 QTQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKM 201
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
ATNTVYVF+ KDSKYAY E RSCLE+SSRPTST+WV+M+ARGGQ KKSAIGQRI+A L
Sbjct: 202 ATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATL 261
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
PYIKQE+PI+IVFRALGFV+DRDILEHIIYDF+DPEMMEMVKPSLDEAFVIQEQNVALNF
Sbjct: 262 PYIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNF 321
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGY-MVHRLLLASLGR 359
IG+RGA+PGVTKE+RIKYA+E+LQKEMLPHVGVSDFCETKKAYFLGY MVHRLLLA+LGR
Sbjct: 322 IGSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYYMVHRLLLAALGR 381
Query: 360 RELDDRDHY 368
RELDDRDHY
Sbjct: 382 RELDDRDHY 390
Score = 1185 (422.2 bits), Expect = 6.1e-302, Sum P(2) = 6.1e-302
Identities = 236/294 (80%), Positives = 251/294 (85%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA L R + VR+YAQKFIDRGKDFNLELAIKT+II+DGL+YSLATGNWGDQKK
Sbjct: 401 LLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKK 460
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
AHQARAGVSQVLNRLTFAS+LSHLRR+NSPIGRDGKLAKPRQLHNTLWGM+CPAETPEG
Sbjct: 461 AHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGH 520
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEI+P+AIADATKIFVNGCWVGIH+
Sbjct: 521 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHK 580
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSXXXXXXXXXXXXHTDAGRICRPLLIAENGSLLLKKR 592
DPEQLM TLRKLRRQMDIIVSEVS +TDAGRICRPLLI E LLLKKR
Sbjct: 581 DPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKR 640
Query: 593 HIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDT 646
HID LKER+YNNY WQ LV SGVVEYIDTLEEET M+AM +Q V Y T
Sbjct: 641 HIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKGVAYCST 694
Score = 123 (48.4 bits), Expect = 1.3e-189, Sum P(2) = 1.3e-189
Identities = 26/41 (63%), Positives = 30/41 (73%)
Query: 618 YIDTLEEETTMIAMWQVLVQSGVVEYIDTLEEETTMIAMSP 658
+ID L+E WQ LV SGVVEYIDTLEEET M+AM+P
Sbjct: 641 HIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTP 681
Score = 50 (22.7 bits), Expect = 0.00087, Sum P(2) = 0.00087
Identities = 16/65 (24%), Positives = 29/65 (44%)
Query: 357 LGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIK--TKIITDGLRYSLATGNWGDQKKAH 414
L R++LD D +++M Q+ ++ +L+ + T + + RY L K H
Sbjct: 40 LVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHATGEVEEPPRYLLKFEQIYLSKPTH 99
Query: 415 QARAG 419
R G
Sbjct: 100 WERDG 104
>UNIPROTKB|C9J4M6 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0005634 GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 EMBL:AC069307 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 HGNC:HGNC:9188 IPI:IPI00873948 STRING:C9J4M6
Ensembl:ENST00000431623 UCSC:uc011caf.1 ArrayExpress:C9J4M6
Bgee:C9J4M6 Uniprot:C9J4M6
Length = 1099
Score = 1469 (522.2 bits), Expect = 1.1e-273, Sum P(2) = 1.1e-273
Identities = 274/307 (89%), Positives = 297/307 (96%)
Query: 62 PRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVT 121
PRYLLKFEQIYLSKPTHWE+DG+PSPMMPNEARLRNLTYSAPLYVDITKTV+++GEE +
Sbjct: 7 PRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQ 66
Query: 122 TQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMA 181
TQHQK+FIGKIPIMLRSTYCLLNGLTDRDL ELNECPLDPGGYFIINGSEKVLIAQEKMA
Sbjct: 67 TQHQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKVLIAQEKMA 126
Query: 182 TNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILP 241
TNTVYVF+ KDSKYAY E RSCLE+SSRPTST+WV+M+ARGGQ KKSAIGQRI+A LP
Sbjct: 127 TNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLP 186
Query: 242 YIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFI 301
YIKQE+PI+IVFRALGFV+DRDILEHIIYDF+DPEMMEMVKPSLDEAFVIQEQNVALNFI
Sbjct: 187 YIKQEVPIIIVFRALGFVSDRDILEHIIYDFEDPEMMEMVKPSLDEAFVIQEQNVALNFI 246
Query: 302 GARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRE 361
G+RGA+PGVTKE+RIKYA+E+LQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLA+LGRRE
Sbjct: 247 GSRGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRE 306
Query: 362 LDDRDHY 368
LDDRDHY
Sbjct: 307 LDDRDHY 313
Score = 1186 (422.6 bits), Expect = 1.1e-273, Sum P(2) = 1.1e-273
Identities = 236/294 (80%), Positives = 251/294 (85%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA L R + VR+YAQKFIDRGKDFNLELAIKT+II+DGL+YSLATGNWGDQKK
Sbjct: 324 LLAFLFRGMFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKK 383
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
AHQARAGVSQVLNRLTFAS+LSHLRR+NSPIGRDGKLAKPRQLHNTLWGM+CPAETPEG
Sbjct: 384 AHQARAGVSQVLNRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGH 443
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEI+P+AIADATKIFVNGCWVGIH+
Sbjct: 444 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHK 503
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSXXXXXXXXXXXXHTDAGRICRPLLIAENGSLLLKKR 592
DPEQLM TLRKLRRQMDIIVSEVS +TDAGRICRPLLI E LLLKKR
Sbjct: 504 DPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKR 563
Query: 593 HIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDT 646
HID LKER+YNNY WQ LV SGVVEYIDTLEEET M+AM +Q V Y T
Sbjct: 564 HIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKEVAYCST 617
Score = 123 (48.4 bits), Expect = 2.9e-161, Sum P(2) = 2.9e-161
Identities = 26/41 (63%), Positives = 30/41 (73%)
Query: 618 YIDTLEEETTMIAMWQVLVQSGVVEYIDTLEEETTMIAMSP 658
+ID L+E WQ LV SGVVEYIDTLEEET M+AM+P
Sbjct: 564 HIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVMLAMTP 604
>WB|WBGene00016140 [details] [associations]
symbol:rpb-2 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0008406 "gonad development" evidence=IMP] [GO:0016477 "cell
migration" evidence=IMP] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005634 GO:GO:0008340
GO:GO:0009792 GO:GO:0016477 GO:GO:0008406 GO:GO:0002119
GO:GO:0046872 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
EMBL:FO080680 eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03010 OMA:IMIVFRA EMBL:U10333 PIR:E88445
PIR:T43701 RefSeq:NP_498047.1 ProteinModelPortal:Q10578 SMR:Q10578
STRING:Q10578 PaxDb:Q10578 EnsemblMetazoa:C26E6.4.1
EnsemblMetazoa:C26E6.4.2 GeneID:175668 KEGG:cel:CELE_C26E6.4
CTD:175668 WormBase:C26E6.4 GeneTree:ENSGT00690000102234
HOGENOM:HOG000222962 InParanoid:Q10578 NextBio:889138
Uniprot:Q10578
Length = 1193
Score = 1601 (568.6 bits), Expect = 7.0e-270, Sum P(2) = 7.0e-270
Identities = 296/366 (80%), Positives = 336/366 (91%)
Query: 2 WQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETP 61
WQEACW+VI+AYFDEKGLVRQQLDSFDEF+QM+VQRIVEDSP ++LQ+E QH T++E P
Sbjct: 29 WQEACWVVISAYFDEKGLVRQQLDSFDEFVQMNVQRIVEDSPPVELQSENQHLGTDMENP 88
Query: 62 PRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVT 121
++ LKF QIYLSKPTHWEKDG+P PMMPNEARLRNLTY++PLYVDITK V R +
Sbjct: 89 AKFSLKFNQIYLSKPTHWEKDGAPMPMMPNEARLRNLTYASPLYVDITKVVTRD-DSATE 147
Query: 122 TQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMA 181
+ K F+GK+P+MLRS+YC+L+ +TDRDLTELNECPLDPGGYF+INGSEKVLIAQEKMA
Sbjct: 148 KVYDKVFVGKVPVMLRSSYCMLSNMTDRDLTELNECPLDPGGYFVINGSEKVLIAQEKMA 207
Query: 182 TNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILP 241
TNTVYVFSMKD KYA+KTE RSCLE+SSRPTST+WVNM+ARGG KK+A+GQRII ILP
Sbjct: 208 TNTVYVFSMKDGKYAFKTECRSCLENSSRPTSTMWVNMLARGGGGGKKTAMGQRIIGILP 267
Query: 242 YIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFI 301
YIKQEIPIMIVFRALGFV+DRDIL HIIYDF+DPEMMEMVKPSLDEAFVIQEQNVALNFI
Sbjct: 268 YIKQEIPIMIVFRALGFVSDRDILGHIIYDFNDPEMMEMVKPSLDEAFVIQEQNVALNFI 327
Query: 302 GARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRE 361
GARGA+PGVT+E+RIKYAREILQKE+LPHVGVS+ CETKKA+F+GYMVHRLLLA+LGRRE
Sbjct: 328 GARGAKPGVTREQRIKYAREILQKELLPHVGVSEHCETKKAFFIGYMVHRLLLAALGRRE 387
Query: 362 LDDRDH 367
LDDRDH
Sbjct: 388 LDDRDH 393
Score = 1018 (363.4 bits), Expect = 7.0e-270, Sum P(2) = 7.0e-270
Identities = 206/296 (69%), Positives = 233/296 (78%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA L R + +RM AQK+I++ DF L++ +KT IT GL YSLATGNWGDQKK
Sbjct: 405 LLAFLFRSLFRNLLKEMRMTAQKYINKNDDFALDVCVKTSTITRGLTYSLATGNWGDQKK 464
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
AHQ+RAGVSQVLNRLT+ ++LSHLRR NSPIGR+GKLAKPRQLHNT WGM+CPAETPEG
Sbjct: 465 AHQSRAGVSQVLNRLTYTATLSHLRRANSPIGREGKLAKPRQLHNTQWGMVCPAETPEGQ 524
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
AVGLVKNLALMAYISVGS P PILEFLEEWSMENLEE++PSAIADATKIFVNG WVGIHR
Sbjct: 525 AVGLVKNLALMAYISVGSLPEPILEFLEEWSMENLEEVSPSAIADATKIFVNGAWVGIHR 584
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSXXXXXXXXXXXXHTDAGRICRPLLIAENGSLLLKKR 592
+P+QLM TL+KLRRQMDIIVSEVS +TDAGR+CRPLLI EN L LKKR
Sbjct: 585 EPDQLMTTLKKLRRQMDIIVSEVSMVRDIRDREIRIYTDAGRVCRPLLIVENQKLALKKR 644
Query: 593 HIDNLKER--DYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDT 646
HID LKE + N Y W LV GVVE ID++EEET+MIAM ++SG Y DT
Sbjct: 645 HIDQLKEAADEANKYTWSDLVGGGVVELIDSMEEETSMIAMMPEDLRSG--GYCDT 698
Score = 93 (37.8 bits), Expect = 4.7e-172, Sum P(2) = 4.7e-172
Identities = 22/43 (51%), Positives = 28/43 (65%)
Query: 618 YIDTLEE--ETTMIAMWQVLVQSGVVEYIDTLEEETTMIAMSP 658
+ID L+E + W LV GVVE ID++EEET+MIAM P
Sbjct: 645 HIDQLKEAADEANKYTWSDLVGGGVVELIDSMEEETSMIAMMP 687
>TAIR|locus:2119013 [details] [associations]
symbol:NRPB2 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA;ISS] [GO:0009793 "embryo development
ending in seed dormancy" evidence=NAS] [GO:0032549 "ribonucleoside
binding" evidence=IEA] [GO:0016591 "DNA-directed RNA polymerase II,
holoenzyme" evidence=ISS] [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=IPI] [GO:0005829 "cytosol" evidence=IDA]
[GO:0009506 "plasmodesma" evidence=IDA] [GO:0000394 "RNA splicing,
via endonucleolytic cleavage and ligation" evidence=RCA]
[GO:0000956 "nuclear-transcribed mRNA catabolic process"
evidence=RCA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=RCA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005829 GO:GO:0009506
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0006351 EMBL:AL161555 EMBL:AL035527 GO:GO:0003899
GO:GO:0005665 eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 EMBL:Z19120 EMBL:Z19121 IPI:IPI00524372
PIR:T05846 RefSeq:NP_193902.1 UniGene:At.112
ProteinModelPortal:P38420 STRING:P38420 PaxDb:P38420 PRIDE:P38420
EnsemblPlants:AT4G21710.1 GeneID:828259 KEGG:ath:AT4G21710
TAIR:At4g21710 HOGENOM:HOG000218612 InParanoid:P38420 KO:K03010
OMA:IMIVFRA PhylomeDB:P38420 ProtClustDB:CLSN2685591
Genevestigator:P38420 GermOnline:AT4G21710 Uniprot:P38420
Length = 1188
Score = 1167 (415.9 bits), Expect = 4.1e-213, Sum P(3) = 4.1e-213
Identities = 237/375 (63%), Positives = 287/375 (76%)
Query: 3 QEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHT----STEV 58
QE W VI+AYF+EKGLVRQQLDSFDEFIQ ++Q IV++S I+++ E+QH S
Sbjct: 23 QEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFA 82
Query: 59 ETPPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQG-- 116
ET Y + F QIYLSKP E DG + + P ARLRNLTYSAPLYVD+TK V+++G
Sbjct: 83 ETI--YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHD 140
Query: 117 -EEPVTTQH-QKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVL 174
EE TQ K FIGK+PIMLRS+YC L +++DLTEL ECP D GGYFIINGSEKVL
Sbjct: 141 GEEVTETQDFTKVFIGKVPIMLRSSYCTLFQNSEKDLTELGECPYDQGGYFIINGSEKVL 200
Query: 175 IAQEKMATNTVYVFSMKD-SKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIG 233
IAQEKM+TN VYVF + +KYAY E+RS E+ +RP ST++V M+AR S K + G
Sbjct: 201 IAQEKMSTNHVYVFKKRQPNKYAYVGEVRSMAENQNRPPSTMFVRMLARA--SAKGGSSG 258
Query: 234 QRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQE 293
Q I LPYI+ EIPI+IVFRALGFVAD+DILEHI YDF D +MME+++PSL+EAFVIQ
Sbjct: 259 QYIRCTLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPSLEEAFVIQN 318
Query: 294 QNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLL 353
Q VAL++IG RGA GVTKE+RIKYAR+ILQKEMLPHVG+ + CETKKAY+ GY++HRLL
Sbjct: 319 QLVALDYIGKRGATVGVTKEKRIKYARDILQKEMLPHVGIGEHCETKKAYYFGYIIHRLL 378
Query: 354 LASLGRRELDDRDHY 368
L +LGRR DDRDHY
Sbjct: 379 LCALGRRPEDDRDHY 393
Score = 844 (302.2 bits), Expect = 4.1e-213, Sum P(3) = 4.1e-213
Identities = 173/280 (61%), Positives = 201/280 (71%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LL L R VR Y QK +D GK+ NL+ AIK K IT GL+YSLATGNWG Q
Sbjct: 404 LLGGLFRMLFRKLTRDVRSYVQKCVDNGKEVNLQFAIKAKTITSGLKYSLATGNWG-QAN 462
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
A RAGVSQVLNRLT+AS+LSHLRR+NSPIGR+GKLAKPRQLHN+ WGM+CPAETPEG
Sbjct: 463 AAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQ 522
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNLALM YI+VGS PILEFLEEW EN EEI+PS I ATKIFVNG WVG+HR
Sbjct: 523 ACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPSVIPQATKIFVNGMWVGVHR 582
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSXXXXXXXXXXXXHTDAGRICRPLLIAENGSLLLKKR 592
DP+ L+ TLR+LRR++D+ +EV +TD GR RPL I +N LL+KKR
Sbjct: 583 DPDMLVKTLRRLRRRVDVN-TEVGVVRDIRLKELRIYTDYGRCSRPLFIVDNQKLLIKKR 641
Query: 593 HIDNLKERDY-NNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
I L++R+ GW LV G +EYIDT EEETTMI+M
Sbjct: 642 DIYALQQRESAEEDGWHHLVAKGFIEYIDTEEEETTMISM 681
Score = 88 (36.0 bits), Expect = 4.1e-213, Sum P(3) = 4.1e-213
Identities = 17/26 (65%), Positives = 20/26 (76%)
Query: 632 WQVLVQSGVVEYIDTLEEETTMIAMS 657
W LV G +EYIDT EEETTMI+M+
Sbjct: 657 WHHLVAKGFIEYIDTEEEETTMISMT 682
Score = 38 (18.4 bits), Expect = 2.2e-120, Sum P(2) = 2.2e-120
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 531 HRDPEQLMGTLRK 543
+RD E+ MGTL K
Sbjct: 822 YRDEEKKMGTLVK 834
>DICTYBASE|DDB_G0288257 [details] [associations]
symbol:rpb2 "RNA polymerase II core subunit"
species:44689 "Dictyostelium discoideum" [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA;ISS] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=ISS] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0016779 "nucleotidyltransferase activity"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 dictyBase:DDB_G0288257 PANTHER:PTHR20856
GO:GO:0046872 GO:GO:0003677 GenomeReviews:CM000154_GR GO:GO:0006366
EMBL:AAFI02000109 GO:GO:0003899 GO:GO:0005665 HSSP:P08518
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03010 OMA:IMIVFRA RefSeq:XP_636812.1 STRING:Q54J75 PRIDE:Q54J75
EnsemblProtists:DDB0216277 GeneID:8626529 KEGG:ddi:DDB_G0288257
ProtClustDB:CLSZ2429137 Uniprot:Q54J75
Length = 1170
Score = 1100 (392.3 bits), Expect = 3.0e-202, Sum P(3) = 3.0e-202
Identities = 228/378 (60%), Positives = 283/378 (74%)
Query: 3 QEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQH------TST 56
QE W VI+AYF EKGLVRQQLDSFDEFIQ ++Q I+++SP I L+ E+QH S
Sbjct: 20 QEDVWTVISAYFQEKGLVRQQLDSFDEFIQNTMQEIIDESPPITLRPESQHHPGQAVVSN 79
Query: 57 EVETPPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVR-- 114
V T + +KF QIYLSKPT E DG + PN+AR+RNLTYSAPL+VDITKTV+
Sbjct: 80 NVST---FSVKFGQIYLSKPTA-EIDGVSQQVTPNQARIRNLTYSAPLFVDITKTVMTGS 135
Query: 115 --QGEEPVTTQHQKS-FIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSE 171
+G+E T + K FIGK+PIMLRS YC+LN DRDLT + EC D GGYFIINGSE
Sbjct: 136 KSKGDERRTDEVLKRIFIGKVPIMLRSQYCMLNEADDRDLTTMGECSFDQGGYFIINGSE 195
Query: 172 KVLIAQEKMATNTVYVFSMKD-SKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKS 230
KVLIAQEKM N VYVF SKY+Y EIRSC E SRPTST+++ M+ + K
Sbjct: 196 KVLIAQEKMNNNHVYVFKKSPPSKYSYVAEIRSCQETGSRPTSTMYLKML----HNTNKG 251
Query: 231 AIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFV 290
+G I A +PYIKQ++P++IVFRALGFVAD+DILEHI YDF D +MM++++PSL+E+FV
Sbjct: 252 PVG--IKATVPYIKQDVPVIIVFRALGFVADKDILEHICYDFKDAQMMDLMRPSLEESFV 309
Query: 291 IQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVH 350
IQ Q VAL+++G RG+ G T+E+RIK+ARE+LQKEMLPHV V++F ETKKA++ GY+ H
Sbjct: 310 IQSQEVALDYLGKRGSTMG-TREQRIKFAREVLQKEMLPHVSVAEFYETKKAFYFGYITH 368
Query: 351 RLLLASLGRRELDDRDHY 368
RLLLASL RR LDDRDH+
Sbjct: 369 RLLLASLERRPLDDRDHF 386
Score = 803 (287.7 bits), Expect = 3.0e-202, Sum P(3) = 3.0e-202
Identities = 162/280 (57%), Positives = 201/280 (71%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LL +L R+ VR+Y Q+ ID+ K+F A+K+K IT GL+YSLATGNWG K
Sbjct: 397 LLGTLFRQLFKKLTKDVRLYLQRCIDKDKEFIASSAVKSKTITSGLKYSLATGNWGSSKS 456
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
++GV+QVLNRLTFAS+LSHLRR+N+PIGR+GKLAKPRQLHNT WG++CP+ETPEG
Sbjct: 457 GG-TKSGVAQVLNRLTFASTLSHLRRLNTPIGREGKLAKPRQLHNTHWGIVCPSETPEGQ 515
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAP-SAIADATKIFVNGCWVGIH 531
A GLVKNLA+M+YISVGS PILEFLEEW+ ENLEEI+ S+I ATKIFVNG WVGIH
Sbjct: 516 ACGLVKNLAMMSYISVGSASQPILEFLEEWTTENLEEISDLSSIFSATKIFVNGMWVGIH 575
Query: 532 RDPEQLMGTLRKLRRQMDIIVSEVSXXXXXXXXXXXXHTDAGRICRPLLIAENGSLLLKK 591
P++L+ TLR LRR D+ V EVS +TD GR CRPL + ++ + +KK
Sbjct: 576 HQPDKLLSTLRLLRRCGDVSV-EVSVVRDIREKELRLYTDPGRCCRPLFVVQDNKVQIKK 634
Query: 592 RHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
+HI+ L D Y WQ L+ G+VEYID EEET +IAM
Sbjct: 635 QHINKLINND--EYKWQDLLSEGIVEYIDAEEEETVLIAM 672
Score = 93 (37.8 bits), Expect = 3.0e-202, Sum P(3) = 3.0e-202
Identities = 17/27 (62%), Positives = 21/27 (77%)
Query: 632 WQVLVQSGVVEYIDTLEEETTMIAMSP 658
WQ L+ G+VEYID EEET +IAM+P
Sbjct: 648 WQDLLSEGIVEYIDAEEEETVLIAMTP 674
>ASPGD|ASPL0000039770 [details] [associations]
symbol:AN9120 species:162425 "Emericella nidulans"
[GO:0031048 "chromatin silencing by small RNA" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0000775 "chromosome, centromeric region" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 EMBL:BN001306 GO:GO:0006351
GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
OMA:IMIVFRA HOGENOM:HOG000222962 EnsemblFungi:CADANIAT00009490
Uniprot:C8VK81
Length = 1252
Score = 725 (260.3 bits), Expect = 7.8e-167, Sum P(3) = 7.8e-167
Identities = 153/313 (48%), Positives = 202/313 (64%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA+L R ++ Y Q+ ++ ++ L + +K +T GLRY+LATGNWG+QKK
Sbjct: 430 LLANLFRVLFTRVTRDLQRYVQRCVESDREIYLNVGLKASTVTQGLRYALATGNWGEQKK 489
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
A A+AGVSQVL+R T+AS+LSHLRR N+PIGRDGK+AKPRQLHNT WG++CPAETPEG
Sbjct: 490 AASAKAGVSQVLSRYTYASTLSHLRRTNTPIGRDGKIAKPRQLHNTHWGLVCPAETPEGQ 549
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNLALM YI+VG+ PI++F+ + +ME LEE P +ATK+FVNG WVG+HR
Sbjct: 550 ACGLVKNLALMCYITVGTPSEPIIDFMIQRNMEVLEEFEPQVTPNATKVFVNGVWVGVHR 609
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSXXXXXXXXXXXXHTDAGRICRPLLIAEN-------G 585
P L+ T++ LRR+ ++I EVS TDAGR+CRPL + +N G
Sbjct: 610 QPSHLVETMQALRRR-NMISHEVSLIRDIREREFKIFTDAGRVCRPLFVVDNDPKSENCG 668
Query: 586 SLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYID 645
+L+L K HI L+E + +D E+ W LV+SGVVEY+D
Sbjct: 669 NLVLNKEHIRKLEE------------DKELPPDMDP-EDRRERYFGWDGLVKSGVVEYVD 715
Query: 646 TLEEETTMIAMSP 658
EEET MI M+P
Sbjct: 716 AEEEETIMIVMTP 728
Score = 684 (245.8 bits), Expect = 7.8e-167, Sum P(3) = 7.8e-167
Identities = 146/286 (51%), Positives = 191/286 (66%)
Query: 119 PVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQE 178
P + + IGK+PIML+S YCLL L ++ L + NECP D GGYFIINGSEKVLIAQE
Sbjct: 170 PDQAKEETVHIGKMPIMLKSKYCLLRDLGEQALYDWNECPYDSGGYFIINGSEKVLIAQE 229
Query: 179 KMATNTVYVFSMKD-SKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRII 237
+ A NTV VF S Y EIRS +E SR S L + + +G + K G I
Sbjct: 230 RSAGNTVQVFKKAPPSPTPYVAEIRSAVEKGSRLLSQLSLKLFGKGDSA--KGGFGPTIR 287
Query: 238 AILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVA 297
+ LPYIK +IPI+IVFRALG V+D DIL HI YD +D M+EM+KP ++E FVIQ++ VA
Sbjct: 288 STLPYIKADIPIVIVFRALGVVSDEDILNHICYDRNDTPMLEMLKPCIEEGFVIQDREVA 347
Query: 298 LNFIGARGA-RPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAS 356
L+FI RG+ + + ERR++YAREI+QKE+LPH+ S+ ET+KA+FLGYMVHRLL +
Sbjct: 348 LDFIAKRGSSQSSMNHERRVRYAREIMQKELLPHISQSEGSETRKAFFLGYMVHRLLQCA 407
Query: 357 LGRRELDDRDHYVRMYAQKFIDRGKDF--NLELAIKTKIITDGLRY 400
LGRR++DDRDH+ +K +D NL + T++ D RY
Sbjct: 408 LGRRDVDDRDHF----GKKRLDLAGPLLANLFRVLFTRVTRDLQRY 449
Score = 277 (102.6 bits), Expect = 7.8e-167, Sum P(3) = 7.8e-167
Identities = 59/139 (42%), Positives = 84/139 (60%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVE--TP 61
E CW VI+++FD KGLV QQLDSFDEFI ++Q +VE+ Q+ L + EV+
Sbjct: 23 EDCWTVISSFFDTKGLVSQQLDSFDEFISSTLQELVEEQGQVTLDQTIPPSEDEVDPVVV 82
Query: 62 PRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVT 121
RY LKF + LS+P E DG+ + M+P+EARLRN+TY++PLY+ I K ++ +G E +
Sbjct: 83 RRYELKFGTVMLSRPMAMEGDGAATIMLPHEARLRNMTYASPLYLGIKKKIM-EGRERMV 141
Query: 122 TQHQKSFIGKIPIMLRSTY 140
+G TY
Sbjct: 142 GDRDDDDMGNEDRKATGTY 160
Score = 38 (18.4 bits), Expect = 2.8e-18, Sum P(3) = 2.8e-18
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLE 500
A+G+V + ++ +I +P+LE L+
Sbjct: 305 ALGVVSDEDILNHICYDRNDTPMLEMLK 332
Score = 37 (18.1 bits), Expect = 3.8e-94, Sum P(3) = 3.8e-94
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 573 GRICRPLLIAENGSLLLKKRHID 595
G + R +IA S LK+R D
Sbjct: 1157 GEMERDCMIAHGASAFLKERLFD 1179
>POMBASE|SPAC23G3.01 [details] [associations]
symbol:rpb2 "RNA polymerase II complex subunit Rpb2"
species:4896 "Schizosaccharomyces pombe" [GO:0000775 "chromosome,
centromeric region" evidence=IDA] [GO:0000790 "nuclear chromatin"
evidence=IC] [GO:0003677 "DNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006366 "transcription from
RNA polymerase II promoter" evidence=IGI] [GO:0031048 "chromatin
silencing by small RNA" evidence=IMP] [GO:0032549 "ribonucleoside
binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IGI] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 PomBase:SPAC23G3.01 PANTHER:PTHR20856 GO:GO:0005829
EMBL:CU329670 GO:GO:0000775 GenomeReviews:CU329670_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0003723 GO:GO:0000790 GO:GO:0006366
GO:GO:0031048 GO:GO:0003899 GO:GO:0005665 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150 PDB:3H0G
PDBsum:3H0G KO:K03010 OMA:IMIVFRA HOGENOM:HOG000222962 EMBL:D13337
PIR:S35548 PIR:T50175 RefSeq:NP_593101.2 ProteinModelPortal:Q02061
IntAct:Q02061 MINT:MINT-1214536 STRING:Q02061
EnsemblFungi:SPAC23G3.01.1 GeneID:2541446 KEGG:spo:SPAC23G3.01
OrthoDB:EOG45HW5D EvolutionaryTrace:Q02061 NextBio:20802548
Uniprot:Q02061
Length = 1210
Score = 1492 (530.3 bits), Expect = 5.8e-153, P = 5.8e-153
Identities = 314/574 (54%), Positives = 397/574 (69%)
Query: 112 VVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSE 171
V + EEP K FIGKIPIMLRST+C+LNG++D +L +LNECP D GGYFIINGSE
Sbjct: 140 VEEEDEEP-----SKVFIGKIPIMLRSTFCILNGVSDSELYDLNECPYDQGGYFIINGSE 194
Query: 172 KVLIAQEKMATNTVYVFSMK-DSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKS 230
KV+IAQE+ A N V VF S AY EIRS LE SR S++ + +MAR ++
Sbjct: 195 KVIIAQERSAANIVQVFKKAAPSPIAYVAEIRSALERGSRLISSMQIKLMARNTENS--- 251
Query: 231 AIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFV 290
GQ I A LPYI+ +IPI+IVFRALG V DRDILEHI YD +D +M+EM+KP ++EAFV
Sbjct: 252 --GQTIRATLPYIRSDIPIVIVFRALGVVPDRDILEHICYDPNDFQMLEMMKPCIEEAFV 309
Query: 291 IQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVH 350
IQ++++AL++IG RG+ GVT+E+R++YA +ILQKE+LPH+ + ET+KA+FLGYM+H
Sbjct: 310 IQDKDIALDYIGKRGSTTGVTREKRLRYAHDILQKELLPHITTMEGFETRKAFFLGYMIH 369
Query: 351 RLLLASLGRRELDDRDHY---------------VRM-----------YAQKFIDRGKDFN 384
R+LL +L RRE DDRDH+ RM Y QK ++ ++FN
Sbjct: 370 RMLLCALERREPDDRDHFGKKRLDLAGPLLASLFRMLFRKMTRDVYKYMQKCVETNREFN 429
Query: 385 LELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIG 444
L LA+K+ IIT+GLRYSLATGNWGDQK++ R GVSQVLNR TFAS+LSHLRR N+PIG
Sbjct: 430 LTLAVKSNIITNGLRYSLATGNWGDQKRSMVNRVGVSQVLNRYTFASTLSHLRRTNTPIG 489
Query: 445 RDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSM 504
RDGKLAKPRQLHNT WGM+CPAETPEG A GLVKNL+LM+Y+SVGS +PI+EFLEEW +
Sbjct: 490 RDGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSYVSVGSPSAPIIEFLEEWGL 549
Query: 505 ENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSXXXXXXXX 564
E LE+ PSA +ATK+FVNG W+G+HRDP L TLR LRR++DI +EVS
Sbjct: 550 ETLEDYNPSASPNATKVFVNGVWLGVHRDPAHLTETLRSLRRRLDIS-AEVSIVRDIREK 608
Query: 565 XXXXHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEE 624
TDAGRICRPL I +N ++ + KE +Q ++E D +
Sbjct: 609 ELRLFTDAGRICRPLFIVDNNPNSERRGELCIRKEH----------IQQ-LIEDKDRYDI 657
Query: 625 ETTMIAMWQVLVQSGVVEYIDTLEEETTMIAMSP 658
+ W LV SG++EY+D EEET MIAMSP
Sbjct: 658 DPEQRFGWTALVSSGLIEYLDAEEEETVMIAMSP 691
Score = 1034 (369.0 bits), Expect = 2.0e-104, P = 2.0e-104
Identities = 211/381 (55%), Positives = 273/381 (71%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
L QE CW VI+++F+E L RQQL SFDEF+Q ++Q IV+D + L AQHT + +
Sbjct: 12 LTQEDCWTVISSFFEETSLARQQLFSFDEFVQNTMQEIVDDDSTLTLDQYAQHTGAQGDV 71
Query: 61 PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTV-------V 113
RY + F QIYLS+PT E DGS + M P EARLRNLTYS+PLYVD+ K V V
Sbjct: 72 TRRYEINFGQIYLSRPTMTEADGSTTTMFPQEARLRNLTYSSPLYVDMRKKVMVAADSNV 131
Query: 114 RQGEEPVTTQHQ-----KSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIIN 168
GEE + + K FIGKIPIMLRST+C+LNG++D +L +LNECP D GGYFIIN
Sbjct: 132 PIGEEEWLVEEEDEEPSKVFIGKIPIMLRSTFCILNGVSDSELYDLNECPYDQGGYFIIN 191
Query: 169 GSEKVLIAQEKMATNTVYVFSMK-DSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSL 227
GSEKV+IAQE+ A N V VF S AY EIRS LE SR S++ + +MAR ++
Sbjct: 192 GSEKVIIAQERSAANIVQVFKKAAPSPIAYVAEIRSALERGSRLISSMQIKLMARNTENS 251
Query: 228 KKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDE 287
GQ I A LPYI+ +IPI+IVFRALG V DRDILEHI YD +D +M+EM+KP ++E
Sbjct: 252 -----GQTIRATLPYIRSDIPIVIVFRALGVVPDRDILEHICYDPNDFQMLEMMKPCIEE 306
Query: 288 AFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGY 347
AFVIQ++++AL++IG RG+ GVT+E+R++YA +ILQKE+LPH+ + ET+KA+FLGY
Sbjct: 307 AFVIQDKDIALDYIGKRGSTTGVTREKRLRYAHDILQKELLPHITTMEGFETRKAFFLGY 366
Query: 348 MVHRLLLASLGRRELDDRDHY 368
M+HR+LL +L RRE DDRDH+
Sbjct: 367 MIHRMLLCALERREPDDRDHF 387
>GENEDB_PFALCIPARUM|PFB0715w [details] [associations]
symbol:PFB0715w "DNA-directed RNA polymerase II
second largest subunit, putative" species:5833 "Plasmodium
falciparum" [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=ISS] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=ISS] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 GO:GO:0006366 EMBL:AE001362 GO:GO:0003899
GO:GO:0005665 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03010 HOGENOM:HOG000222962 RefSeq:XP_001349662.2
ProteinModelPortal:O96236 PRIDE:O96236
EnsemblProtists:PFB0715w:mRNA GeneID:812744 KEGG:pfa:PFB0715w
EuPathDB:PlasmoDB:PF3D7_0215700 ProtClustDB:CLSZ2444926
Uniprot:O96236
Length = 1340
Score = 822 (294.4 bits), Expect = 7.8e-149, Sum P(2) = 7.8e-149
Identities = 162/375 (43%), Positives = 254/375 (67%)
Query: 3 QEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPP 62
++ W+VI ++F GLV QQ++S+++FI+ +Q I+++ P+I+++ + Q+ + E
Sbjct: 33 EDDSWVVIGSFFGSHGLVNQQIESYNDFIEYRMQEIIDEHPKIEIRPQPQYRTDRDENDN 92
Query: 63 R-YLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKT--VVRQ-GEE 118
Y LKF Q+ L +P + EK+ S + P EARLRNLTYS+ +Y+DI ++ ++ + ++
Sbjct: 93 IIYSLKFGQLSLDRPFYDEKNLSNKNLWPQEARLRNLTYSSAIYIDIEQSTYIIDEVTKK 152
Query: 119 PVTTQ---HQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLI 175
PV + +++ +G+IP+ML+S +C GL + ++ ++ EC D GGYFI+NG EKVL+
Sbjct: 153 PVLKEKFIYERINLGRIPLMLKSMFCWTKGLPENEIADMGECSYDQGGYFIVNGGEKVLV 212
Query: 176 AQEKMATNTVYVFSMKD-SKYAYKTEIRSCLEHSSRPTSTLWVNMMAR-GGQSLKKSAIG 233
AQE+MA N +YVF K SK+ + EIRS +E S + TS V M R GG + G
Sbjct: 213 AQERMANNFIYVFKKKQPSKFGWVAEIRSQMERS-QATSGFSVKMKTRSGGSQYGSNKSG 271
Query: 234 QRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQE 293
+++A LPYI+ EI + I+FRALG +DRDIL+ I+YDF+D M+ ++ +L+E
Sbjct: 272 GQLVATLPYIRTEISVGILFRALGCTSDRDILQRIVYDFNDKLMINALRETLEECIEYPT 331
Query: 294 QNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLL 353
Q+V L+FIG RG G ++E+RI YA+E+L+KE+LPH+G E+KK+YF+GYM++RLL
Sbjct: 332 QDVCLDFIGKRGPTVGASREKRILYAKELLRKEVLPHMGTHPGVESKKSYFIGYMINRLL 391
Query: 354 LASLGRRELDDRDHY 368
LA LGR + DDRDH+
Sbjct: 392 LAELGRIKEDDRDHF 406
Score = 668 (240.2 bits), Expect = 7.8e-149, Sum P(2) = 7.8e-149
Identities = 137/280 (48%), Positives = 183/280 (65%)
Query: 369 VRMYAQKFIDRGKDFNLELAIKT-KIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRL 427
VR Q+ ID K F++ AI++ IT G++Y LATGNWG K R GV+QVLNRL
Sbjct: 433 VRRVLQRQIDNNKPFDVAGAIRSCSQITQGMQYQLATGNWGKDKDGKVIRTGVAQVLNRL 492
Query: 428 TFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYIS 487
T++S LSHLRR+N+P+GR+GK+AKPRQLHNT WGMICP ETPEG +VGLVKNL+LM IS
Sbjct: 493 TYSSCLSHLRRLNTPLGREGKMAKPRQLHNTHWGMICPFETPEGQSVGLVKNLSLMCDIS 552
Query: 488 VGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQ 547
VG+ + I EFL EW +E+L+E+ P + + K+F+NG WVG + L+ TL +LRR+
Sbjct: 553 VGTSTNNIYEFLTEWGLESLDEVPPELMKEKVKLFLNGKWVGCFNQIDNLIETLYELRRR 612
Query: 548 MDIIVSEVSXXXXXXXXXXXXHTDAGRICRPLLIAEN----GSLLLKKRHIDNLKERDYN 603
DI E S TD+GR RPL + +N L L K H++N+ E+
Sbjct: 613 CDIS-PEASIVRDVNSKEIKIFTDSGRAMRPLYVVKNVNGENKLKLTKEHVNNI-EKYPE 670
Query: 604 NYGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEY 643
Y W L+Q G++EYID EEETTMI+M+ +++G Y
Sbjct: 671 TYNWDYLIQEGIIEYIDCEEEETTMISMFIDDLKTGTGYY 710
Score = 94 (38.1 bits), Expect = 3.2e-88, Sum P(2) = 3.2e-88
Identities = 18/40 (45%), Positives = 27/40 (67%)
Query: 617 EYIDTLEEETTMIAMWQVLVQSGVVEYIDTLEEETTMIAM 656
E+++ +E+ W L+Q G++EYID EEETTMI+M
Sbjct: 660 EHVNNIEKYPETYN-WDYLIQEGIIEYIDCEEEETTMISM 698
Score = 37 (18.1 bits), Expect = 3.3e-82, Sum P(2) = 3.3e-82
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 583 ENGSLLLKK------RHIDNLKERDYNNYGWQVLVQSGV 615
+ GSL+++ R + NLK DY L+ G+
Sbjct: 840 QQGSLIIESFEKPSVRVVKNLKRGDYTKLDDDGLIAPGI 878
>UNIPROTKB|O96236 [details] [associations]
symbol:PFB0715w "DNA-directed RNA polymerase" species:36329
"Plasmodium falciparum 3D7" [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=ISS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISS]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006366 EMBL:AE001362
GO:GO:0003899 GO:GO:0005665 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03010 HOGENOM:HOG000222962
RefSeq:XP_001349662.2 ProteinModelPortal:O96236 PRIDE:O96236
EnsemblProtists:PFB0715w:mRNA GeneID:812744 KEGG:pfa:PFB0715w
EuPathDB:PlasmoDB:PF3D7_0215700 ProtClustDB:CLSZ2444926
Uniprot:O96236
Length = 1340
Score = 822 (294.4 bits), Expect = 7.8e-149, Sum P(2) = 7.8e-149
Identities = 162/375 (43%), Positives = 254/375 (67%)
Query: 3 QEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPP 62
++ W+VI ++F GLV QQ++S+++FI+ +Q I+++ P+I+++ + Q+ + E
Sbjct: 33 EDDSWVVIGSFFGSHGLVNQQIESYNDFIEYRMQEIIDEHPKIEIRPQPQYRTDRDENDN 92
Query: 63 R-YLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKT--VVRQ-GEE 118
Y LKF Q+ L +P + EK+ S + P EARLRNLTYS+ +Y+DI ++ ++ + ++
Sbjct: 93 IIYSLKFGQLSLDRPFYDEKNLSNKNLWPQEARLRNLTYSSAIYIDIEQSTYIIDEVTKK 152
Query: 119 PVTTQ---HQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLI 175
PV + +++ +G+IP+ML+S +C GL + ++ ++ EC D GGYFI+NG EKVL+
Sbjct: 153 PVLKEKFIYERINLGRIPLMLKSMFCWTKGLPENEIADMGECSYDQGGYFIVNGGEKVLV 212
Query: 176 AQEKMATNTVYVFSMKD-SKYAYKTEIRSCLEHSSRPTSTLWVNMMAR-GGQSLKKSAIG 233
AQE+MA N +YVF K SK+ + EIRS +E S + TS V M R GG + G
Sbjct: 213 AQERMANNFIYVFKKKQPSKFGWVAEIRSQMERS-QATSGFSVKMKTRSGGSQYGSNKSG 271
Query: 234 QRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQE 293
+++A LPYI+ EI + I+FRALG +DRDIL+ I+YDF+D M+ ++ +L+E
Sbjct: 272 GQLVATLPYIRTEISVGILFRALGCTSDRDILQRIVYDFNDKLMINALRETLEECIEYPT 331
Query: 294 QNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLL 353
Q+V L+FIG RG G ++E+RI YA+E+L+KE+LPH+G E+KK+YF+GYM++RLL
Sbjct: 332 QDVCLDFIGKRGPTVGASREKRILYAKELLRKEVLPHMGTHPGVESKKSYFIGYMINRLL 391
Query: 354 LASLGRRELDDRDHY 368
LA LGR + DDRDH+
Sbjct: 392 LAELGRIKEDDRDHF 406
Score = 668 (240.2 bits), Expect = 7.8e-149, Sum P(2) = 7.8e-149
Identities = 137/280 (48%), Positives = 183/280 (65%)
Query: 369 VRMYAQKFIDRGKDFNLELAIKT-KIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRL 427
VR Q+ ID K F++ AI++ IT G++Y LATGNWG K R GV+QVLNRL
Sbjct: 433 VRRVLQRQIDNNKPFDVAGAIRSCSQITQGMQYQLATGNWGKDKDGKVIRTGVAQVLNRL 492
Query: 428 TFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYIS 487
T++S LSHLRR+N+P+GR+GK+AKPRQLHNT WGMICP ETPEG +VGLVKNL+LM IS
Sbjct: 493 TYSSCLSHLRRLNTPLGREGKMAKPRQLHNTHWGMICPFETPEGQSVGLVKNLSLMCDIS 552
Query: 488 VGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQ 547
VG+ + I EFL EW +E+L+E+ P + + K+F+NG WVG + L+ TL +LRR+
Sbjct: 553 VGTSTNNIYEFLTEWGLESLDEVPPELMKEKVKLFLNGKWVGCFNQIDNLIETLYELRRR 612
Query: 548 MDIIVSEVSXXXXXXXXXXXXHTDAGRICRPLLIAEN----GSLLLKKRHIDNLKERDYN 603
DI E S TD+GR RPL + +N L L K H++N+ E+
Sbjct: 613 CDIS-PEASIVRDVNSKEIKIFTDSGRAMRPLYVVKNVNGENKLKLTKEHVNNI-EKYPE 670
Query: 604 NYGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEY 643
Y W L+Q G++EYID EEETTMI+M+ +++G Y
Sbjct: 671 TYNWDYLIQEGIIEYIDCEEEETTMISMFIDDLKTGTGYY 710
Score = 94 (38.1 bits), Expect = 3.2e-88, Sum P(2) = 3.2e-88
Identities = 18/40 (45%), Positives = 27/40 (67%)
Query: 617 EYIDTLEEETTMIAMWQVLVQSGVVEYIDTLEEETTMIAM 656
E+++ +E+ W L+Q G++EYID EEETTMI+M
Sbjct: 660 EHVNNIEKYPETYN-WDYLIQEGIIEYIDCEEEETTMISM 698
Score = 37 (18.1 bits), Expect = 3.3e-82, Sum P(2) = 3.3e-82
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 583 ENGSLLLKK------RHIDNLKERDYNNYGWQVLVQSGV 615
+ GSL+++ R + NLK DY L+ G+
Sbjct: 840 QQGSLIIESFEKPSVRVVKNLKRGDYTKLDDDGLIAPGI 878
>CGD|CAL0004145 [details] [associations]
symbol:orf19.3349 species:5476 "Candida albicans" [GO:0042493
"response to drug" evidence=IMP] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0000775
"chromosome, centromeric region" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003968 "RNA-directed RNA polymerase activity" evidence=IEA]
[GO:0031048 "chromatin silencing by small RNA" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 CGD:CAL0004145 PANTHER:PTHR20856 GO:GO:0042493
GO:GO:0003677 GO:GO:0006351 EMBL:AACQ01000045 EMBL:AACQ01000042
GO:GO:0003899 eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03010 HOGENOM:HOG000222962
RefSeq:XP_718172.1 RefSeq:XP_718439.1 STRING:Q5A8Y5 GeneID:3639932
GeneID:3640223 KEGG:cal:CaO19.10857 KEGG:cal:CaO19.3349
Uniprot:Q5A8Y5
Length = 1234
Score = 1161 (413.8 bits), Expect = 6.9e-118, P = 6.9e-118
Identities = 266/569 (46%), Positives = 350/569 (61%)
Query: 117 EEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIA 176
EEP K F+GK+PIMLRS +C+L L + + EL ECP D GGYF+INGSEKVLIA
Sbjct: 149 EEPDKDTETKVFLGKVPIMLRSKFCMLRDLAEHEFYELKECPYDMGGYFVINGSEKVLIA 208
Query: 177 QEKMATNTVYVFSMK-DSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQR 235
QE+ A N V VF S ++ EIRS +E SR S++ + + R +K G+
Sbjct: 209 QERSAANIVQVFKKAAPSPISHVAEIRSAIEKGSRLISSMQIKLYGRD----EKGVSGRT 264
Query: 236 IIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQN 295
I A LPYIK++IPI+IVFRALG V D DILEHI YD +D +M+EM+KP ++E FVIQE+
Sbjct: 265 IKATLPYIKEDIPIVIVFRALGVVPDGDILEHICYDANDWQMLEMLKPCVEEGFVIQERE 324
Query: 296 VALNFIGARG------------AR--------PGVTKERRIKYAREILQKEMLPHVGVSD 335
VAL+FIG RG A+ P +T+E + + M+ + +
Sbjct: 325 VALDFIGRRGVLGIRREKRIQYAKDILQKELLPNITQEEGFETRKAFFLGYMVNRLLLCA 384
Query: 336 FCETKKAYFLGYM-VHRL-----LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAI 389
E K+ + RL LLA+L R + Y Q+ ++ G DFN+ LA+
Sbjct: 385 L-ERKEPDDRDHFGKKRLDLAGPLLANLFRILFKKLTKDIYNYMQRCVENGGDFNVTLAV 443
Query: 390 KTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKL 449
K++ ITDGLRYSLATGNWG+Q+KA +RAGVSQVLNR T++S+LSHLRR N+PIGRDGK+
Sbjct: 444 KSQTITDGLRYSLATGNWGEQRKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIGRDGKI 503
Query: 450 AKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEE 509
AKPRQLHNT WG++CPAETPEG A GLVKNL+LM ISVG+ PIL FL ++ +E LE+
Sbjct: 504 AKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCISVGTPSEPILGFLRDYGLEVLED 563
Query: 510 IAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSXXXXXXXXXXXXH 569
PS D+T++FVNG WVG+HRDP L+ +R+LRR D+ EVS
Sbjct: 564 YVPSNAPDSTRVFVNGVWVGVHRDPAALVDFMRELRRSGDLS-PEVSIIRDIREKEFKIF 622
Query: 570 TDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMI 629
TDAGR+ RPL I ++ K + KE + L++S ++ D E+
Sbjct: 623 TDAGRVYRPLFIVDDNPDSETKGELKITKEHV------KQLLRSDELDEDD--EDYENSR 674
Query: 630 AMWQVLVQSGVVEYIDTLEEETTMIAMSP 658
W LV G+VEY+D EEET MIAM+P
Sbjct: 675 YTWSSLVADGIVEYVDAEEEETIMIAMTP 703
Score = 951 (339.8 bits), Expect = 1.2e-95, P = 1.2e-95
Identities = 197/380 (51%), Positives = 258/380 (67%)
Query: 3 QEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPP 62
QE CW VI ++F EKGLV QQLDSFDEF++ S+Q +V + + L AQHTS +
Sbjct: 22 QEDCWTVITSFFQEKGLVSQQLDSFDEFVETSIQELVWEDSHLILDQPAQHTSEKDHENK 81
Query: 63 RYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQG------ 116
RY + F +IY+SKP+ E DGS + P EARLRNLTYS+PLYVD+T V +
Sbjct: 82 RYEITFGKIYISKPSQTEGDGSTHAVFPQEARLRNLTYSSPLYVDMTSKVFKSDDNKRKD 141
Query: 117 -------EEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIING 169
EEP K F+GK+PIMLRS +C+L L + + EL ECP D GGYF+ING
Sbjct: 142 NELEWIQEEPDKDTETKVFLGKVPIMLRSKFCMLRDLAEHEFYELKECPYDMGGYFVING 201
Query: 170 SEKVLIAQEKMATNTVYVFSMK-DSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLK 228
SEKVLIAQE+ A N V VF S ++ EIRS +E SR S++ + + R +
Sbjct: 202 SEKVLIAQERSAANIVQVFKKAAPSPISHVAEIRSAIEKGSRLISSMQIKLYGRD----E 257
Query: 229 KSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA 288
K G+ I A LPYIK++IPI+IVFRALG V D DILEHI YD +D +M+EM+KP ++E
Sbjct: 258 KGVSGRTIKATLPYIKEDIPIVIVFRALGVVPDGDILEHICYDANDWQMLEMLKPCVEEG 317
Query: 289 FVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYM 348
FVIQE+ VAL+FIG RG G+ +E+RI+YA++ILQKE+LP++ + ET+KA+FLGYM
Sbjct: 318 FVIQEREVALDFIGRRGVL-GIRREKRIQYAKDILQKELLPNITQEEGFETRKAFFLGYM 376
Query: 349 VHRLLLASLGRRELDDRDHY 368
V+RLLL +L R+E DDRDH+
Sbjct: 377 VNRLLLCALERKEPDDRDHF 396
>UNIPROTKB|Q5A8Y5 [details] [associations]
symbol:RPB140 "DNA-directed RNA polymerase" species:237561
"Candida albicans SC5314" [GO:0042493 "response to drug"
evidence=IMP] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 CGD:CAL0004145 PANTHER:PTHR20856 GO:GO:0042493
GO:GO:0003677 GO:GO:0006351 EMBL:AACQ01000045 EMBL:AACQ01000042
GO:GO:0003899 eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03010 HOGENOM:HOG000222962
RefSeq:XP_718172.1 RefSeq:XP_718439.1 STRING:Q5A8Y5 GeneID:3639932
GeneID:3640223 KEGG:cal:CaO19.10857 KEGG:cal:CaO19.3349
Uniprot:Q5A8Y5
Length = 1234
Score = 1161 (413.8 bits), Expect = 6.9e-118, P = 6.9e-118
Identities = 266/569 (46%), Positives = 350/569 (61%)
Query: 117 EEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIA 176
EEP K F+GK+PIMLRS +C+L L + + EL ECP D GGYF+INGSEKVLIA
Sbjct: 149 EEPDKDTETKVFLGKVPIMLRSKFCMLRDLAEHEFYELKECPYDMGGYFVINGSEKVLIA 208
Query: 177 QEKMATNTVYVFSMK-DSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQR 235
QE+ A N V VF S ++ EIRS +E SR S++ + + R +K G+
Sbjct: 209 QERSAANIVQVFKKAAPSPISHVAEIRSAIEKGSRLISSMQIKLYGRD----EKGVSGRT 264
Query: 236 IIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQN 295
I A LPYIK++IPI+IVFRALG V D DILEHI YD +D +M+EM+KP ++E FVIQE+
Sbjct: 265 IKATLPYIKEDIPIVIVFRALGVVPDGDILEHICYDANDWQMLEMLKPCVEEGFVIQERE 324
Query: 296 VALNFIGARG------------AR--------PGVTKERRIKYAREILQKEMLPHVGVSD 335
VAL+FIG RG A+ P +T+E + + M+ + +
Sbjct: 325 VALDFIGRRGVLGIRREKRIQYAKDILQKELLPNITQEEGFETRKAFFLGYMVNRLLLCA 384
Query: 336 FCETKKAYFLGYM-VHRL-----LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAI 389
E K+ + RL LLA+L R + Y Q+ ++ G DFN+ LA+
Sbjct: 385 L-ERKEPDDRDHFGKKRLDLAGPLLANLFRILFKKLTKDIYNYMQRCVENGGDFNVTLAV 443
Query: 390 KTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKL 449
K++ ITDGLRYSLATGNWG+Q+KA +RAGVSQVLNR T++S+LSHLRR N+PIGRDGK+
Sbjct: 444 KSQTITDGLRYSLATGNWGEQRKAMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIGRDGKI 503
Query: 450 AKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEE 509
AKPRQLHNT WG++CPAETPEG A GLVKNL+LM ISVG+ PIL FL ++ +E LE+
Sbjct: 504 AKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMTCISVGTPSEPILGFLRDYGLEVLED 563
Query: 510 IAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSXXXXXXXXXXXXH 569
PS D+T++FVNG WVG+HRDP L+ +R+LRR D+ EVS
Sbjct: 564 YVPSNAPDSTRVFVNGVWVGVHRDPAALVDFMRELRRSGDLS-PEVSIIRDIREKEFKIF 622
Query: 570 TDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMI 629
TDAGR+ RPL I ++ K + KE + L++S ++ D E+
Sbjct: 623 TDAGRVYRPLFIVDDNPDSETKGELKITKEHV------KQLLRSDELDEDD--EDYENSR 674
Query: 630 AMWQVLVQSGVVEYIDTLEEETTMIAMSP 658
W LV G+VEY+D EEET MIAM+P
Sbjct: 675 YTWSSLVADGIVEYVDAEEEETIMIAMTP 703
Score = 951 (339.8 bits), Expect = 1.2e-95, P = 1.2e-95
Identities = 197/380 (51%), Positives = 258/380 (67%)
Query: 3 QEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPP 62
QE CW VI ++F EKGLV QQLDSFDEF++ S+Q +V + + L AQHTS +
Sbjct: 22 QEDCWTVITSFFQEKGLVSQQLDSFDEFVETSIQELVWEDSHLILDQPAQHTSEKDHENK 81
Query: 63 RYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQG------ 116
RY + F +IY+SKP+ E DGS + P EARLRNLTYS+PLYVD+T V +
Sbjct: 82 RYEITFGKIYISKPSQTEGDGSTHAVFPQEARLRNLTYSSPLYVDMTSKVFKSDDNKRKD 141
Query: 117 -------EEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIING 169
EEP K F+GK+PIMLRS +C+L L + + EL ECP D GGYF+ING
Sbjct: 142 NELEWIQEEPDKDTETKVFLGKVPIMLRSKFCMLRDLAEHEFYELKECPYDMGGYFVING 201
Query: 170 SEKVLIAQEKMATNTVYVFSMK-DSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLK 228
SEKVLIAQE+ A N V VF S ++ EIRS +E SR S++ + + R +
Sbjct: 202 SEKVLIAQERSAANIVQVFKKAAPSPISHVAEIRSAIEKGSRLISSMQIKLYGRD----E 257
Query: 229 KSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA 288
K G+ I A LPYIK++IPI+IVFRALG V D DILEHI YD +D +M+EM+KP ++E
Sbjct: 258 KGVSGRTIKATLPYIKEDIPIVIVFRALGVVPDGDILEHICYDANDWQMLEMLKPCVEEG 317
Query: 289 FVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYM 348
FVIQE+ VAL+FIG RG G+ +E+RI+YA++ILQKE+LP++ + ET+KA+FLGYM
Sbjct: 318 FVIQEREVALDFIGRRGVL-GIRREKRIQYAKDILQKELLPNITQEEGFETRKAFFLGYM 376
Query: 349 VHRLLLASLGRRELDDRDHY 368
V+RLLL +L R+E DDRDH+
Sbjct: 377 VNRLLLCALERKEPDDRDHF 396
>SGD|S000005677 [details] [associations]
symbol:RPB2 "RNA polymerase II second largest subunit B150"
species:4932 "Saccharomyces cerevisiae" [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA;IDA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003968 "RNA-directed
RNA polymerase activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IDA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 SGD:S000005677 PANTHER:PTHR20856 GO:GO:0005739
EMBL:BK006948 GO:GO:0046872 GO:GO:0003677 GO:GO:0006366
GO:GO:0003899 EMBL:U55020 RefSeq:NP_014796.3 GeneID:854324
KEGG:sce:YOR153W KO:K08711 GO:GO:0005665 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150 PDB:1I3Q
PDB:1I50 PDB:1I6H PDB:1K83 PDB:1NIK PDB:1NT9 PDB:1PQV PDB:1R5U
PDB:1R9S PDB:1R9T PDB:1SFO PDB:1TWA PDB:1TWC PDB:1TWF PDB:1TWG
PDB:1TWH PDB:1WCM PDB:1Y1V PDB:1Y1W PDB:1Y1Y PDB:1Y77 PDB:2B63
PDB:2B8K PDB:2E2H PDB:2E2I PDB:2E2J PDB:2JA5 PDB:2JA6 PDB:2JA7
PDB:2JA8 PDB:2NVQ PDB:2NVT PDB:2NVX PDB:2NVY PDB:2NVZ PDB:2R7Z
PDB:2R92 PDB:2R93 PDB:2VUM PDB:2YU9 PDB:3CQZ PDB:3FKI PDB:3GTG
PDB:3GTJ PDB:3GTK PDB:3GTL PDB:3GTM PDB:3GTO PDB:3GTP PDB:3GTQ
PDB:3H3V PDB:3HOU PDB:3HOV PDB:3HOW PDB:3HOX PDB:3HOY PDB:3HOZ
PDB:3I4M PDB:3I4N PDB:3K1F PDB:3K7A PDB:3M3Y PDB:3M4O PDB:3PO2
PDB:3PO3 PDB:3QT1 PDB:3RZD PDB:3RZO PDB:3S14 PDB:3S15 PDB:3S16
PDB:3S17 PDB:3S1M PDB:3S1N PDB:3S1Q PDB:3S1R PDB:3S2D PDB:3S2H
PDB:4A3B PDB:4A3C PDB:4A3D PDB:4A3E PDB:4A3F PDB:4A3G PDB:4A3I
PDB:4A3J PDB:4A3K PDB:4A3L PDB:4A3M PDB:4A93 PDB:4BBR PDB:4BBS
PDBsum:1I3Q PDBsum:1I50 PDBsum:1I6H PDBsum:1K83 PDBsum:1NIK
PDBsum:1NT9 PDBsum:1PQV PDBsum:1R5U PDBsum:1R9S PDBsum:1R9T
PDBsum:1SFO PDBsum:1TWA PDBsum:1TWC PDBsum:1TWF PDBsum:1TWG
PDBsum:1TWH PDBsum:1WCM PDBsum:1Y1V PDBsum:1Y1W PDBsum:1Y1Y
PDBsum:1Y77 PDBsum:2B63 PDBsum:2B8K PDBsum:2E2H PDBsum:2E2I
PDBsum:2E2J PDBsum:2JA5 PDBsum:2JA6 PDBsum:2JA7 PDBsum:2JA8
PDBsum:2NVQ PDBsum:2NVT PDBsum:2NVX PDBsum:2NVY PDBsum:2NVZ
PDBsum:2R7Z PDBsum:2R92 PDBsum:2R93 PDBsum:2VUM PDBsum:2YU9
PDBsum:3CQZ PDBsum:3FKI PDBsum:3GTG PDBsum:3GTJ PDBsum:3GTK
PDBsum:3GTL PDBsum:3GTM PDBsum:3GTO PDBsum:3GTP PDBsum:3GTQ
PDBsum:3H3V PDBsum:3HOU PDBsum:3HOV PDBsum:3HOW PDBsum:3HOX
PDBsum:3HOY PDBsum:3HOZ PDBsum:3I4M PDBsum:3I4N PDBsum:3K1F
PDBsum:3K7A PDBsum:3M3Y PDBsum:3M4O PDBsum:3PO2 PDBsum:3PO3
PDBsum:3QT1 PDBsum:3RZD PDBsum:3RZO PDBsum:3S14 PDBsum:3S15
PDBsum:3S16 PDBsum:3S17 PDBsum:3S1M PDBsum:3S1N PDBsum:3S1Q
PDBsum:3S1R PDBsum:3S2D PDBsum:3S2H PDBsum:4A3B PDBsum:4A3C
PDBsum:4A3D PDBsum:4A3E PDBsum:4A3F PDBsum:4A3G PDBsum:4A3I
PDBsum:4A3J PDBsum:4A3K PDBsum:4A3L PDBsum:4A3M PDBsum:4A93
PDBsum:4BBR PDBsum:4BBS KO:K03010 OMA:IMIVFRA
GeneTree:ENSGT00690000102234 HOGENOM:HOG000222962 OrthoDB:EOG45HW5D
EMBL:M15693 EMBL:Z75059 EMBL:AF527884 PIR:A25884 RefSeq:NP_014794.3
ProteinModelPortal:P08518 DIP:DIP-14N IntAct:P08518
MINT:MINT-654304 STRING:P08518 PaxDb:P08518 PeptideAtlas:P08518
PRIDE:P08518 EnsemblFungi:YOR151C GeneID:854322 KEGG:sce:YOR151C
CYGD:YOR151c EvolutionaryTrace:P08518 NextBio:976360
ArrayExpress:P08518 Genevestigator:P08518 GermOnline:YOR151C
Uniprot:P08518
Length = 1224
Score = 867 (310.3 bits), Expect = 1.4e-86, P = 1.4e-86
Identities = 204/451 (45%), Positives = 278/451 (61%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIV-EDSPQIDLQAEAQHTSTEVETPP 62
E W VI+A+F EKGLV QQLDSF++F+ ++Q I+ EDS I L+ AQHT+
Sbjct: 28 EDSWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIICEDSTLI-LEQLAQHTTESDNISR 86
Query: 63 RYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEP--- 119
+Y + F +IY++KP E DG + P EARLRNLTYS+ L+VD+ K + P
Sbjct: 87 KYEISFGKIYVTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVKKRTYEAIDVPGRE 146
Query: 120 -----VTTQHQ------KSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIIN 168
+ + + K FIG++PIMLRS C L+ T+ DL +L ECP D GGYFIIN
Sbjct: 147 LKYELIAEESEDDSESGKVFIGRLPIMLRSKNCYLSEATESDLYKLKECPFDMGGYFIIN 206
Query: 169 GSEKVLIAQEKMATNTVYVFSMK-DSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSL 227
GSEKVLIAQE+ A N V VF S ++ EIRS LE SR STL V + R G S
Sbjct: 207 GSEKVLIAQERSAGNIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQVKLYGREGSSA 266
Query: 228 KKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDE 287
+ I A LPYIKQ+IPI+I+FRALG + D +ILEHI YD +D +M+EM+KP +++
Sbjct: 267 RT------IKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPCVED 320
Query: 288 AFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGY 347
FVIQ++ AL+FIG RG G+ KE+RI+YA++ILQKE LPH+ + E++KA+FLGY
Sbjct: 321 GFVIQDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGY 380
Query: 348 MVHRLLLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKT---KIITDGLRYSLAT 404
M++RLLL +L R++ DDRDH+ +K +D +L KT K+ D RY T
Sbjct: 381 MINRLLLCALDRKDQDDRDHF----GKKRLDLAGPLLAQL-FKTLFKKLTKDIFRYMQRT 435
Query: 405 GNWGDQKKAHQARAGVSQVLNRLTFASSLSH 435
++AH ++ +N T S L +
Sbjct: 436 -----VEEAHDFNMKLA--INAKTITSGLKY 459
Score = 749 (268.7 bits), Expect = 2.0e-73, P = 2.0e-73
Identities = 160/312 (51%), Positives = 202/312 (64%)
Query: 353 LLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKK 412
LLA L + + Y Q+ ++ DFN++LAI K IT GL+Y+LATGNWG+QKK
Sbjct: 412 LLAQLFKTLFKKLTKDIFRYMQRTVEEAHDFNMKLAINAKTITSGLKYALATGNWGEQKK 471
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGA 472
A +RAGVSQVLNR T++S+LSHLRR N+PIGRDGKLAKPRQLHNT WG++CPAETPEG
Sbjct: 472 AMSSRAGVSQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQ 531
Query: 473 AVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
A GLVKNL+LM+ ISVG+ P PI+ FL EW ME LE+ P DAT++FVNG W G+HR
Sbjct: 532 ACGLVKNLSLMSCISVGTDPMPIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHR 591
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSXXXXXXXXXXXXHTDAGRICRPLLIAENGSLL---- 588
+P +LM TLR LRR+ DI EVS TDAGR+ RPL I E+ L
Sbjct: 592 NPARLMETLRTLRRKGDIN-PEVSMIRDIREKELKIFTDAGRVYRPLFIVEDDESLGHKE 650
Query: 589 --LKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDT 646
++K HI L +Y + ++ G + +EE T W L+ G+VEYID
Sbjct: 651 LKVRKGHIAKLMATEYQD------IEGG----FEDVEEYT-----WSSLLNEGLVEYIDA 695
Query: 647 LEEETTMIAMSP 658
EEE+ +IAM P
Sbjct: 696 EEEESILIAMQP 707
>SGD|S000005733 [details] [associations]
symbol:RET1 "Second-largest subunit of RNA polymerase III"
species:4932 "Saccharomyces cerevisiae" [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA;IDA] [GO:0042797 "tRNA
transcription from RNA polymerase III promoter" evidence=IGI;IDA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0032549 "ribonucleoside
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005666 "DNA-directed RNA polymerase III complex"
evidence=IDA] [GO:0005634 "nucleus" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 SGD:S000005733 PANTHER:PTHR20856 EMBL:BK006948
GO:GO:0046872 GO:GO:0003677 GO:GO:0005666 GO:GO:0003899
Reactome:REACT_83470 EMBL:M38723 eggNOG:COG0085 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 Reactome:REACT_87991
GO:GO:0042797 HOGENOM:HOG000222962 KO:K03021
GeneTree:ENSGT00690000102214 OMA:DMIMNPH OrthoDB:EOG4K6KC8
EMBL:Z75115 PIR:S67099 RefSeq:NP_014850.1 ProteinModelPortal:P22276
DIP:DIP-997N IntAct:P22276 MINT:MINT-644049 STRING:P22276
PaxDb:P22276 PeptideAtlas:P22276 EnsemblFungi:YOR207C GeneID:854382
KEGG:sce:YOR207C CYGD:YOR207c NextBio:976523 Genevestigator:P22276
GermOnline:YOR207C Uniprot:P22276
Length = 1149
Score = 656 (236.0 bits), Expect = 1.1e-78, Sum P(3) = 1.1e-78
Identities = 187/609 (30%), Positives = 305/609 (50%)
Query: 59 ETPPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEE 118
+ P + LK+ I + K + +P P+E RLR++TYSAP+YVDI T +G
Sbjct: 86 DVDPEFYLKYVDIRVGKKSSSSTKDYLTP--PHECRLRDMTYSAPIYVDIEYT---RGRN 140
Query: 119 PVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQE 178
+ H+ IG++PIMLRS C+L + + +LNECPLDPGGYFI+NG+EKV++ QE
Sbjct: 141 II--MHKDVEIGRMPIMLRSNKCILYDADESKMAKLNECPLDPGGYFIVNGTEKVILVQE 198
Query: 179 KMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIA 238
+++ N + V + K + + S T + N G LK ++I +
Sbjct: 199 QLSKNRIIV-EADEKKGIVQASVTSSTHERKSKTYVITKN----GKIYLKHNSIAE---- 249
Query: 239 ILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVAL 298
EIPI IV +A G ++D +I++ + + + + V I Q AL
Sbjct: 250 -------EIPIAIVLKACGILSDLEIMQLVCGNDSSYQDIFAVNLEESSKLDIYTQQQAL 302
Query: 299 NFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLG 358
+IGA+ K ++ E + ++ H+ V +KA ++ M R+++A
Sbjct: 303 EYIGAKVKTMRRQKLTILQEGIEAIATTVIAHLTVEALDFREKALYIAMMTRRVVMAMYN 362
Query: 359 RRELDDRDHY----VRMYAQK----FIDRGKDFN-----------------------LEL 387
+ +DDRD+ + + Q F D K FN L +
Sbjct: 363 PKMIDDRDYVGNKRLELAGQLISLLFEDLFKKFNNDFKLSIDKVLKKPNRAMEYDALLSI 422
Query: 388 AIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDG 447
+ + IT GL +++TGNW K+ RAGV+ VL+RL++ S+L + R++S +
Sbjct: 423 NVHSNNITSGLNRAISTGNWS-LKRFKMERAGVTHVLSRLSYISALGMMTRISSQFEKSR 481
Query: 448 KLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENL 507
K++ PR L + +GM+C A+TPEG A GLVKNLALM +I+ + PI + +E++
Sbjct: 482 KVSGPRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEEEPIKKLCYVLGVEDI 541
Query: 508 EEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSE-VSXXXXXXXXXX 566
I +++ +++NG +G R P + + R LRR VSE +S
Sbjct: 542 TLIDSASLHLNYGVYLNGTLIGSIRFPTKFVTQFRHLRRTGK--VSEFISIYSNSHQMAV 599
Query: 567 XXHTDAGRICRPLLIAENGSLLLKKRHIDNLK--ERDYNNYGWQVLVQSGVVEYIDTLEE 624
TD GRICRPL+I +G +K H+ L E D++++ ++ G+VEY+D EE
Sbjct: 600 HIATDGGRICRPLIIVSDGQSRVKDIHLRKLLDGELDFDDF-----LKLGLVEYLDVNEE 654
Query: 625 ETTMIAMWQ 633
+ IA+++
Sbjct: 655 NDSYIALYE 663
Score = 145 (56.1 bits), Expect = 1.1e-78, Sum P(3) = 1.1e-78
Identities = 37/105 (35%), Positives = 62/105 (59%)
Query: 7 WIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPRYLL 66
W ++ A+ KGLV+Q LDSF+ F+ +++I++ + Q+ L ++V+ P + L
Sbjct: 45 WHLLPAFLKVKGLVKQHLDSFNYFVDTDLKKIIKAN-QLIL--------SDVD--PEFYL 93
Query: 67 KFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKT 111
K+ I + K + +P P+E RLR++TYSAP+YVDI T
Sbjct: 94 KYVDIRVGKKSSSSTKDYLTP--PHECRLRDMTYSAPIYVDIEYT 136
Score = 47 (21.6 bits), Expect = 1.1e-78, Sum P(3) = 1.1e-78
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 639 GVVEYIDTLEEETTMIAM 656
G+VEY+D EE + IA+
Sbjct: 644 GLVEYLDVNEENDSYIAL 661
>ZFIN|ZDB-GENE-030131-2887 [details] [associations]
symbol:polr3b "polymerase (RNA) III (DNA directed)
polypeptide B" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0031017 "exocrine pancreas development" evidence=IMP]
[GO:0048565 "digestive tract development" evidence=IMP] [GO:0009304
"tRNA transcription" evidence=IMP] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 ZFIN:ZDB-GENE-030131-2887
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
GeneTree:ENSGT00690000102214 EMBL:BX465207 IPI:IPI00505191
Ensembl:ENSDART00000091466 ArrayExpress:F1QQA2 Bgee:F1QQA2
Uniprot:F1QQA2
Length = 1129
Score = 395 (144.1 bits), Expect = 1.5e-76, Sum P(3) = 1.5e-76
Identities = 87/260 (33%), Positives = 148/260 (56%)
Query: 379 RGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRR 438
R F++ ++ IT+G+ +++TGNW K+ R GV+QVL+RL+F S+L + R
Sbjct: 391 RAAQFDVVKHMRQDQITNGMVNAISTGNWS-LKRFKMDRQGVTQVLSRLSFISALGMMTR 449
Query: 439 VNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEF 498
++S + K++ PR L + WGM+CP++TPEG A GLVKNLALM +I+ + PI++
Sbjct: 450 ISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIIKL 509
Query: 499 LEEWSMENLEEIAPSAIADATK--IFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVS 556
+E++ + ++ T +F+NG +G+ RD ++L+ T R +RR I VS
Sbjct: 510 AFNLGVEDVNLLCGEELSYPTVFLVFLNGNILGVIRDHQKLVYTFRLMRRA-GFINEFVS 568
Query: 557 XXXXXXXXXXXXHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVV 616
+D GR+CRP +I +NG +K +HI+ L + Y + + + +V
Sbjct: 569 ISTNLTDRCVYISSDGGRLCRPYIIVKNGKPAVKNKHIEELSQ-GYRTF--EDFLHESLV 625
Query: 617 EYIDTLEEETTMIAMWQVLV 636
EY+D EE IA+++ ++
Sbjct: 626 EYLDVNEENDCNIALYEHMI 645
Score = 337 (123.7 bits), Expect = 1.5e-76, Sum P(3) = 1.5e-76
Identities = 84/239 (35%), Positives = 133/239 (55%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPR 63
E W ++ A+ KGLV+Q +DSF+ FI + +++I++ + +I A+ P
Sbjct: 24 EEKWKLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKITSDAD-----------PM 72
Query: 64 YLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQ 123
+ LK+ IY+ P E P+ P+E RLR++TYSAP+ VDI T +G + +
Sbjct: 73 WYLKYLNIYVGMPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYT---RGSQRIIRN 129
Query: 124 HQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATN 183
IG++PIMLRS+ C+L G T + ++LNECPLDPGGYFI+ G EKV++ QE+++ N
Sbjct: 130 ALP--IGRMPIMLRSSNCVLTGKTPMEFSKLNECPLDPGGYFIVKGQEKVILIQEQLSKN 187
Query: 184 TVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQS-LKKSAIGQRI-IAIL 240
+ V +D K + S T NM+ + G+ LK + + + IAI+
Sbjct: 188 RIIVD--QDRKGTVGASVTSSTHEKKSRT-----NMIVKQGRFYLKHNTLSEDAPIAII 239
Score = 164 (62.8 bits), Expect = 1.5e-76, Sum P(3) = 1.5e-76
Identities = 54/163 (33%), Positives = 86/163 (52%)
Query: 243 IKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQ--EQNVALNF 300
+ ++ PI I+F+A+G +D++I++ I + +M PSL+E Q Q AL +
Sbjct: 230 LSEDAPIAIIFKAMGVESDQEIVQMI---GTEEHVMAAFAPSLEECQKAQIFTQTQALRY 286
Query: 301 IGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
IG + R + + ++ ARE+L +L HV V +F K +L MV R++LA G
Sbjct: 287 IGNKVRRQRMWGGQ-MEEARELLASTILTHVPVKEFNFRAKCIYLAVMVRRVILAQ-GDN 344
Query: 361 ELDDRDHY----VRMYAQK----FIDRGKDFNLELA-IKTKII 394
++DDRD+Y + + Q F D K FN EL I +II
Sbjct: 345 KVDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSELKKIADQII 387
Score = 42 (19.8 bits), Expect = 8.2e-39, Sum P(3) = 8.2e-39
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 622 LEEETTMIAMWQVLVQSGVVEYIDTLEEETTMIAM 656
+EE + ++ + +VEY+D EE IA+
Sbjct: 606 IEELSQGYRTFEDFLHESLVEYLDVNEENDCNIAL 640
Score = 37 (18.1 bits), Expect = 1.2e-25, Sum P(3) = 1.2e-25
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 255 ALGFVADRDILEHIIYDFDDPEMMEM 280
A G V + ++ HI D +D ++++
Sbjct: 484 ACGLVKNLALMTHITTDMEDGPIIKL 509
>UNIPROTKB|F8VRE2 [details] [associations]
symbol:POLR3B "DNA-directed RNA polymerase III subunit
RPC2" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR015712
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
EMBL:AC009721 GO:GO:0032549 EMBL:AC078992 EMBL:AC080012
HGNC:HGNC:30348 IPI:IPI01022248 ProteinModelPortal:F8VRE2
SMR:F8VRE2 Ensembl:ENST00000551370 ArrayExpress:F8VRE2 Bgee:F8VRE2
Uniprot:F8VRE2
Length = 676
Score = 728 (261.3 bits), Expect = 2.9e-74, Sum P(2) = 2.9e-74
Identities = 202/662 (30%), Positives = 339/662 (51%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPR 63
E W ++ A+ KGLV+Q +DSF+ FI + +++I++ + ++ A+ P
Sbjct: 24 EEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDAD-----------PM 72
Query: 64 YLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQ 123
+ LK+ IY+ P E P+ P+E RLR++TYSAP+ VDI T +G + +
Sbjct: 73 WYLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYT---RGSQRIIRN 129
Query: 124 HQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATN 183
IG++PIMLRS+ C+L G T + +LNECPLDPGGYFI+ G EKV++ QE+++ N
Sbjct: 130 ALP--IGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKN 187
Query: 184 TVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQS-LKKSAIGQRIIAILPY 242
+ V + D K A + S T NM + G+ L+ + + + I ++ +
Sbjct: 188 RIIVEA--DRKGAVGASVTSSTHEKKSRT-----NMAVKQGRFYLRHNTLSEDIPIVIIF 240
Query: 243 IKQEIPI-MIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFI 301
+ + + +G EH++ F P + E K + +Q N +
Sbjct: 241 KAMGVESDQEIVQMIGTE------EHVMAAFG-PSLEECQKAQIFTQ--MQALKYIGNKV 291
Query: 302 GARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRE 361
+ G K+ +I+ ARE+L +L HV V +F K + MV R++LA G +
Sbjct: 292 RRQRMWGGGPKKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQ-GDNK 350
Query: 362 LDDRDHY----VRMYAQK----FIDRGKDFNLELA-IKTKII------------------ 394
+DDRD+Y + + Q F D K FN E+ I ++I
Sbjct: 351 VDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQ 410
Query: 395 -TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPR 453
T+G+ +++TGNW K+ R GV+QVL+RL++ S+L + R++S + K++ PR
Sbjct: 411 ITNGMVNAISTGNWS-LKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPR 469
Query: 454 QLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPS 513
L + WGM+CP++TPEG A GLVKNLALM +I+ + PI++ +E++ +
Sbjct: 470 SLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLLCGE 529
Query: 514 AIA--DATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSXXXXXXXXXXXXHTD 571
++ + +F+NG +G+ RD ++L+ T R +RR I VS +D
Sbjct: 530 ELSYPNVFLVFLNGNILGVIRDHKKLVNTFRLMRRA-GYINEFVSISTNLTDRCVYISSD 588
Query: 572 AGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
GR+CRP +I + + +H++ L + Y N+ + + +VEY+D EE IA+
Sbjct: 589 GGRLCRPYIIVKKQKPAVTNKHMEELAQ-GYRNF--EDFLHESLVEYLDVNEENDCNIAL 645
Query: 632 WQ 633
++
Sbjct: 646 YE 647
Score = 40 (19.1 bits), Expect = 2.9e-74, Sum P(2) = 2.9e-74
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 622 LEEETTMIAMWQVLVQSGVVEYIDTLEEETTMIAM 656
+EE ++ + +VEY+D EE IA+
Sbjct: 611 MEELAQGYRNFEDFLHESLVEYLDVNEENDCNIAL 645
>UNIPROTKB|F1SPQ0 [details] [associations]
symbol:LOC100737037 "DNA-directed RNA polymerase"
species:9823 "Sus scrofa" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
GeneTree:ENSGT00690000102214 OMA:DMIMNPH EMBL:FP565199
Ensembl:ENSSSCT00000000178 Uniprot:F1SPQ0
Length = 902
Score = 723 (259.6 bits), Expect = 9.7e-74, Sum P(2) = 9.7e-74
Identities = 200/659 (30%), Positives = 337/659 (51%)
Query: 7 WIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPRYLL 66
W ++ A+ KGLV+Q +DSF+ FI + +++I++ + ++ A+ P + L
Sbjct: 24 WRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDAD-----------PMWYL 72
Query: 67 KFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQK 126
K+ IY+ P E P+ P+E RLR++TYSAP+ VDI T +G + +
Sbjct: 73 KYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYT---RGSQRIIRNALP 129
Query: 127 SFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVY 186
IG++PIMLRS+ C+L G T + +LNECPLDPGGYFI+ G EKV++ QE+++ N +
Sbjct: 130 --IGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKNRII 187
Query: 187 VFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQS-LKKSAIGQRIIAILPYIKQ 245
V + D K + S T NM + G+ L+ + + + I ++ +
Sbjct: 188 VEA--DRKGTVGASVTSSTHEKKSRT-----NMAVKQGRFYLRHNTLSEDIPIVIIFKAM 240
Query: 246 EIPI-MIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGAR 304
+ + + +G EH++ F P + E K + +Q N + +
Sbjct: 241 GVESDQEIVQMIGTE------EHVMAAFG-PSLEECQKAQIFTQ--MQALKYIGNKVRRQ 291
Query: 305 GARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDD 364
G K+ +I+ ARE+L +L HV V +F K + MV R++LA G ++DD
Sbjct: 292 RMWGGGPKKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQ-GDNKVDD 350
Query: 365 RDHY----VRMYAQK----FIDRGKDFNLELA-IKTKII-------------------TD 396
RD+Y + + Q F D K FN E+ I ++I T+
Sbjct: 351 RDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQITN 410
Query: 397 GLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLH 456
G+ +++TGNW K+ R GV+QVL+RL++ S+L + R++S + K++ PR L
Sbjct: 411 GMVNAISTGNWS-LKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQ 469
Query: 457 NTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIA 516
+ WGM+CP++TPEG A GLVKNLALM +I+ + PI++ +E++ + ++
Sbjct: 470 PSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLLCGEELS 529
Query: 517 --DATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSXXXXXXXXXXXXHTDAGR 574
+ +F+NG +G+ RD ++L+ T R +RR I VS +D GR
Sbjct: 530 YPNVFLVFLNGNILGVIRDHKKLVNTFRLMRRA-GYINEFVSISTNLTDRCVYISSDGGR 588
Query: 575 ICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQ 633
+CRP +I + + +H++ L + Y N+ + + +VEY+D EE IA+++
Sbjct: 589 LCRPYIIVKKQKPAVTNKHMEELAQ-GYRNF--EDFLHESLVEYLDVNEENDCNIALYE 644
Score = 40 (19.1 bits), Expect = 9.7e-74, Sum P(2) = 9.7e-74
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 622 LEEETTMIAMWQVLVQSGVVEYIDTLEEETTMIAM 656
+EE ++ + +VEY+D EE IA+
Sbjct: 608 MEELAQGYRNFEDFLHESLVEYLDVNEENDCNIAL 642
>UNIPROTKB|Q9NW08 [details] [associations]
symbol:POLR3B "DNA-directed RNA polymerase III subunit
RPC2" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0045087 "innate immune response" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0051607 "defense response to
virus" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0045089 "positive regulation of innate
immune response" evidence=IMP] [GO:0032728 "positive regulation of
interferon-beta production" evidence=IMP] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006383 "transcription from RNA polymerase III
promoter" evidence=TAS] [GO:0006385 "transcription elongation from
RNA polymerase III promoter" evidence=TAS] [GO:0006386 "termination
of RNA polymerase III transcription" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] Reactome:REACT_71
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0005654 GO:GO:0046872 GO:GO:0003677
GO:GO:0045087 EMBL:CH471054 GO:GO:0006351 GO:GO:0051607
GO:GO:0045089 Reactome:REACT_1788 GO:GO:0003899 GO:GO:0032728
GO:GO:0006386 GO:GO:0006385 EMBL:AC009721 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000222962 HOVERGEN:HBG017744 Orphanet:88637 KO:K03021
OMA:DMIMNPH EMBL:AY092084 EMBL:AK001161 EMBL:AK001250 EMBL:AK122713
EMBL:AK291635 EMBL:AC078992 EMBL:AC080012 EMBL:BC046238
IPI:IPI00301346 IPI:IPI00930490 RefSeq:NP_001154180.1
RefSeq:NP_060552.4 UniGene:Hs.610795 UniGene:Hs.62696
ProteinModelPortal:Q9NW08 IntAct:Q9NW08 STRING:Q9NW08
PhosphoSite:Q9NW08 DMDM:29428029 PaxDb:Q9NW08 PRIDE:Q9NW08
Ensembl:ENST00000228347 Ensembl:ENST00000539066 GeneID:55703
KEGG:hsa:55703 UCSC:uc001tlp.3 CTD:55703 GeneCards:GC12P106751
H-InvDB:HIX0037055 HGNC:HGNC:30348 HPA:HPA036466 MIM:614366
MIM:614381 neXtProt:NX_Q9NW08 PharmGKB:PA134867680
InParanoid:Q9NW08 OrthoDB:EOG49ZXND PhylomeDB:Q9NW08
GenomeRNAi:55703 NextBio:60549 ArrayExpress:Q9NW08 Bgee:Q9NW08
CleanEx:HS_POLR3B Genevestigator:Q9NW08 GermOnline:ENSG00000013503
Uniprot:Q9NW08
Length = 1133
Score = 728 (261.3 bits), Expect = 5.4e-73, Sum P(2) = 5.4e-73
Identities = 202/662 (30%), Positives = 339/662 (51%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPR 63
E W ++ A+ KGLV+Q +DSF+ FI + +++I++ + ++ A+ P
Sbjct: 24 EEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDAD-----------PM 72
Query: 64 YLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQ 123
+ LK+ IY+ P E P+ P+E RLR++TYSAP+ VDI T +G + +
Sbjct: 73 WYLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYT---RGSQRIIRN 129
Query: 124 HQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATN 183
IG++PIMLRS+ C+L G T + +LNECPLDPGGYFI+ G EKV++ QE+++ N
Sbjct: 130 ALP--IGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKN 187
Query: 184 TVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQS-LKKSAIGQRIIAILPY 242
+ V + D K A + S T NM + G+ L+ + + + I ++ +
Sbjct: 188 RIIVEA--DRKGAVGASVTSSTHEKKSRT-----NMAVKQGRFYLRHNTLSEDIPIVIIF 240
Query: 243 IKQEIPI-MIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFI 301
+ + + +G EH++ F P + E K + +Q N +
Sbjct: 241 KAMGVESDQEIVQMIGTE------EHVMAAFG-PSLEECQKAQIFTQ--MQALKYIGNKV 291
Query: 302 GARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRE 361
+ G K+ +I+ ARE+L +L HV V +F K + MV R++LA G +
Sbjct: 292 RRQRMWGGGPKKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQ-GDNK 350
Query: 362 LDDRDHY----VRMYAQK----FIDRGKDFNLELA-IKTKII------------------ 394
+DDRD+Y + + Q F D K FN E+ I ++I
Sbjct: 351 VDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQ 410
Query: 395 -TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPR 453
T+G+ +++TGNW K+ R GV+QVL+RL++ S+L + R++S + K++ PR
Sbjct: 411 ITNGMVNAISTGNWS-LKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPR 469
Query: 454 QLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPS 513
L + WGM+CP++TPEG A GLVKNLALM +I+ + PI++ +E++ +
Sbjct: 470 SLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLLCGE 529
Query: 514 AIA--DATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSXXXXXXXXXXXXHTD 571
++ + +F+NG +G+ RD ++L+ T R +RR I VS +D
Sbjct: 530 ELSYPNVFLVFLNGNILGVIRDHKKLVNTFRLMRRA-GYINEFVSISTNLTDRCVYISSD 588
Query: 572 AGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
GR+CRP +I + + +H++ L + Y N+ + + +VEY+D EE IA+
Sbjct: 589 GGRLCRPYIIVKKQKPAVTNKHMEELAQ-GYRNF--EDFLHESLVEYLDVNEENDCNIAL 645
Query: 632 WQ 633
++
Sbjct: 646 YE 647
Score = 40 (19.1 bits), Expect = 5.4e-73, Sum P(2) = 5.4e-73
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 622 LEEETTMIAMWQVLVQSGVVEYIDTLEEETTMIAM 656
+EE ++ + +VEY+D EE IA+
Sbjct: 611 MEELAQGYRNFEDFLHESLVEYLDVNEENDCNIAL 645
>MGI|MGI:1917678 [details] [associations]
symbol:Polr3b "polymerase (RNA) III (DNA directed)
polypeptide B" species:10090 "Mus musculus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0032728 "positive
regulation of interferon-beta production" evidence=ISO] [GO:0045087
"innate immune response" evidence=IEA] [GO:0045089 "positive
regulation of innate immune response" evidence=ISO] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0051607 "defense response to
virus" evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 MGI:MGI:1917678 PANTHER:PTHR20856 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0045087 GO:GO:0006351
GO:GO:0051607 GO:GO:0045089 GO:GO:0003899 GO:GO:0032728
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000222962 HOVERGEN:HBG017744 KO:K03021
GeneTree:ENSGT00690000102214 OMA:DMIMNPH CTD:55703
OrthoDB:EOG49ZXND EMBL:BC044796 EMBL:BC068143 EMBL:AK039366
IPI:IPI00410871 RefSeq:NP_081699.1 UniGene:Mm.335007
ProteinModelPortal:P59470 STRING:P59470 PhosphoSite:P59470
PaxDb:P59470 PRIDE:P59470 Ensembl:ENSMUST00000077175 GeneID:70428
KEGG:mmu:70428 UCSC:uc007gku.1 InParanoid:P59470 NextBio:331603
Bgee:P59470 CleanEx:MM_POLR3B Genevestigator:P59470
GermOnline:ENSMUSG00000034453 Uniprot:P59470
Length = 1133
Score = 727 (261.0 bits), Expect = 7.0e-73, Sum P(2) = 7.0e-73
Identities = 202/662 (30%), Positives = 339/662 (51%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPR 63
E W ++ A+ KGLV+Q +DSF+ FI + +++I++ + ++ A+ P
Sbjct: 24 EEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDAD-----------PM 72
Query: 64 YLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQ 123
+ LK+ IY+ P E P+ P+E RLR++TYSAP+ VDI T +G + +
Sbjct: 73 WYLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYT---RGSQRIIRN 129
Query: 124 HQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATN 183
IG++PIMLRS+ C+L G T + +LNECPLDPGGYFI+ G EKV++ QE+++ N
Sbjct: 130 ALP--IGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKN 187
Query: 184 TVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQS-LKKSAIGQRIIAILPY 242
+ V + D K A + S T NM + G+ L+ + + + I ++ +
Sbjct: 188 RIIVEA--DRKGAVGASVTSSTHEKKSRT-----NMAVKQGRFYLRHNTLSEDIPIVIIF 240
Query: 243 IKQEIPI-MIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFI 301
+ + + +G EH++ F P + E K + +Q N +
Sbjct: 241 KAMGVESDQEIVQMIGTE------EHVMAAFG-PSLEECQKAQIFTQ--MQALKYIGNKV 291
Query: 302 GARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRE 361
+ G K+ +I+ ARE+L +L HV V +F K + MV R++LA G +
Sbjct: 292 RRQRMWGGGPKKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQ-GDNK 350
Query: 362 LDDRDHY----VRMYAQK----FIDRGKDFNLELA-IKTKII------------------ 394
+DDRD+Y + + Q F D K FN E+ I ++I
Sbjct: 351 VDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQ 410
Query: 395 -TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPR 453
T+G+ +++TGNW K+ R GV+QVL+RL++ S+L + R++S + K++ PR
Sbjct: 411 ITNGMVNAISTGNWS-LKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPR 469
Query: 454 QLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPS 513
L + WGM+CP++TPEG A GLVKNLALM +I+ + PI++ +E++ +
Sbjct: 470 SLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIIKLAGNLGVEDVNLLCGE 529
Query: 514 AIA--DATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSXXXXXXXXXXXXHTD 571
++ + +F+NG +G+ RD ++L+ T R +RR I VS +D
Sbjct: 530 ELSYPNVFLVFLNGNILGVIRDHKKLVSTFRLMRRA-GYINEFVSISTNLTDRCVYISSD 588
Query: 572 AGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
GR+CRP +I + + +H++ L + Y N+ + + +VEY+D EE IA+
Sbjct: 589 GGRLCRPYIIVKKQKPAVTNKHMEELAQ-GYRNF--EDFLHESLVEYLDVNEENDCNIAL 645
Query: 632 WQ 633
++
Sbjct: 646 YE 647
Score = 40 (19.1 bits), Expect = 7.0e-73, Sum P(2) = 7.0e-73
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 622 LEEETTMIAMWQVLVQSGVVEYIDTLEEETTMIAM 656
+EE ++ + +VEY+D EE IA+
Sbjct: 611 MEELAQGYRNFEDFLHESLVEYLDVNEENDCNIAL 645
>RGD|1565311 [details] [associations]
symbol:Polr3b "polymerase (RNA) III (DNA directed) polypeptide
B" species:10116 "Rattus norvegicus" [GO:0003674
"molecular_function" evidence=ND] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0032728 "positive
regulation of interferon-beta production" evidence=IEA;ISO]
[GO:0045089 "positive regulation of innate immune response"
evidence=IEA;ISO] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 RGD:1565311 PANTHER:PTHR20856 GO:GO:0003677
GO:GO:0006351 GO:GO:0045089 GO:GO:0003899 GO:GO:0032728
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150 KO:K03021
GeneTree:ENSGT00690000102214 OMA:DMIMNPH CTD:55703
OrthoDB:EOG49ZXND IPI:IPI00365981 RefSeq:NP_001178807.1
UniGene:Rn.37546 Ensembl:ENSRNOT00000009746 GeneID:362858
KEGG:rno:362858 UCSC:RGD:1565311 NextBio:681550 Uniprot:D3ZV30
Length = 1133
Score = 727 (261.0 bits), Expect = 7.0e-73, Sum P(2) = 7.0e-73
Identities = 202/662 (30%), Positives = 339/662 (51%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPR 63
E W ++ A+ KGLV+Q +DSF+ FI + +++I++ + ++ A+ P
Sbjct: 24 EEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDAD-----------PM 72
Query: 64 YLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQ 123
+ LK+ IY+ P E P+ P+E RLR++TYSAP+ VDI T +G + +
Sbjct: 73 WYLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYT---RGSQRIIRN 129
Query: 124 HQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATN 183
IG++PIMLRS+ C+L G T + +LNECPLDPGGYFI+ G EKV++ QE+++ N
Sbjct: 130 ALP--IGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKN 187
Query: 184 TVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQS-LKKSAIGQRIIAILPY 242
+ V + D K A + S T NM + G+ L+ + + + I ++ +
Sbjct: 188 RIIVEA--DRKGAVGASVTSSTHEKKSRT-----NMAVKQGRFYLRHNTLSEDIPIVIIF 240
Query: 243 IKQEIPI-MIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFI 301
+ + + +G EH++ F P + E K + +Q N +
Sbjct: 241 KAMGVESDQEIVQMIGTE------EHVMAAFG-PSLEECQKAQIFTQ--MQALKYIGNKV 291
Query: 302 GARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRE 361
+ G K+ +I+ ARE+L +L HV V +F K + MV R++LA G +
Sbjct: 292 RRQRMWGGGPKKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQ-GDNK 350
Query: 362 LDDRDHY----VRMYAQK----FIDRGKDFNLELA-IKTKII------------------ 394
+DDRD+Y + + Q F D K FN E+ I ++I
Sbjct: 351 VDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQ 410
Query: 395 -TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPR 453
T+G+ +++TGNW K+ R GV+QVL+RL++ S+L + R++S + K++ PR
Sbjct: 411 ITNGMVNAISTGNWS-LKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPR 469
Query: 454 QLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPS 513
L + WGM+CP++TPEG A GLVKNLALM +I+ + PI++ +E++ +
Sbjct: 470 SLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIIKLAGNLGVEDVNLLCGE 529
Query: 514 AIA--DATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSXXXXXXXXXXXXHTD 571
++ + +F+NG +G+ RD ++L+ T R +RR I VS +D
Sbjct: 530 ELSYPNVFLVFLNGNILGVIRDHKKLVSTFRLMRRA-GYINEFVSISTNLTDRCVYISSD 588
Query: 572 AGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
GR+CRP +I + + +H++ L + Y N+ + + +VEY+D EE IA+
Sbjct: 589 GGRLCRPYIIVKKQKPAVTNKHMEELAQ-GYRNF--EDFLHESLVEYLDVNEENDCNIAL 645
Query: 632 WQ 633
++
Sbjct: 646 YE 647
Score = 40 (19.1 bits), Expect = 7.0e-73, Sum P(2) = 7.0e-73
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 622 LEEETTMIAMWQVLVQSGVVEYIDTLEEETTMIAM 656
+EE ++ + +VEY+D EE IA+
Sbjct: 611 MEELAQGYRNFEDFLHESLVEYLDVNEENDCNIAL 645
>UNIPROTKB|E1BPX6 [details] [associations]
symbol:POLR3B "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045089 "positive regulation of innate immune response"
evidence=IEA] [GO:0032728 "positive regulation of interferon-beta
production" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0045089
GO:GO:0003899 GO:GO:0032728 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03021 GeneTree:ENSGT00690000102214
OMA:DMIMNPH CTD:55703 EMBL:DAAA02013740 EMBL:DAAA02013741
EMBL:DAAA02013742 IPI:IPI00924128 RefSeq:NP_001179718.1
UniGene:Bt.42818 Ensembl:ENSBTAT00000038043 GeneID:540839
KEGG:bta:540839 NextBio:20878865 ArrayExpress:E1BPX6 Uniprot:E1BPX6
Length = 1133
Score = 724 (259.9 bits), Expect = 1.5e-72, Sum P(2) = 1.5e-72
Identities = 201/662 (30%), Positives = 338/662 (51%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPR 63
E W ++ A+ KGLV+Q +DSF+ FI + +++I++ + ++ A+ P
Sbjct: 24 EEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDAD-----------PM 72
Query: 64 YLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQ 123
+ LK+ IY+ P E P+ P+E RLR++TYSAP+ VDI T +G + +
Sbjct: 73 WYLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYT---RGSQRIIRN 129
Query: 124 HQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATN 183
IG++PIMLRS+ C+L G T + +LNECPLDPGGYFI+ G EKV++ QE+++ N
Sbjct: 130 ALP--IGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKN 187
Query: 184 TVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQS-LKKSAIGQRIIAILPY 242
+ V + D K + S T NM + G+ L+ + + + I ++ +
Sbjct: 188 RIIVEA--DRKGTVGASVTSSTHEKKSRT-----NMAVKQGRFYLRHNTLSEDIPIVIIF 240
Query: 243 IKQEIPI-MIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFI 301
+ + + +G EH++ F P + E K + +Q N +
Sbjct: 241 KAMGVESDQEIVQMIGTE------EHVMAAFG-PSLEECQKAQIFTQ--MQALKYIGNKV 291
Query: 302 GARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRE 361
+ G K+ +I+ ARE+L +L HV V +F K + MV R++LA G +
Sbjct: 292 RRQRMWGGGPKKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQ-GDNK 350
Query: 362 LDDRDHY----VRMYAQK----FIDRGKDFNLELA-IKTKII------------------ 394
+DDRD+Y + + Q F D K FN E+ I ++I
Sbjct: 351 VDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQ 410
Query: 395 -TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPR 453
T+G+ +++TGNW K+ R GV+QVL+RL++ S+L + R++S + K++ PR
Sbjct: 411 ITNGMVNAISTGNWS-LKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPR 469
Query: 454 QLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPS 513
L + WGM+CP++TPEG A GLVKNLALM +I+ + PI++ +E++ +
Sbjct: 470 SLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLLCGE 529
Query: 514 AIA--DATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSXXXXXXXXXXXXHTD 571
++ + +F+NG +G+ RD ++L+ T R +RR I VS +D
Sbjct: 530 ELSYPNVFLVFLNGNILGVIRDHKKLVNTFRLMRRA-GYINEFVSISTNLTDRCVYISSD 588
Query: 572 AGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
GR+CRP +I + + +H++ L + Y N+ + + +VEY+D EE IA+
Sbjct: 589 GGRLCRPYIIVKKQKPAVTNKHMEELAQ-GYRNF--EDFLHESLVEYLDVNEENDCNIAL 645
Query: 632 WQ 633
++
Sbjct: 646 YE 647
Score = 40 (19.1 bits), Expect = 1.5e-72, Sum P(2) = 1.5e-72
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 622 LEEETTMIAMWQVLVQSGVVEYIDTLEEETTMIAM 656
+EE ++ + +VEY+D EE IA+
Sbjct: 611 MEELAQGYRNFEDFLHESLVEYLDVNEENDCNIAL 645
>UNIPROTKB|E2RHZ2 [details] [associations]
symbol:POLR3B "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0045089 "positive regulation of innate
immune response" evidence=IEA] [GO:0032728 "positive regulation of
interferon-beta production" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0032549 "ribonucleoside
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0045089
GO:GO:0003899 GO:GO:0032728 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03021 GeneTree:ENSGT00690000102214
OMA:DMIMNPH CTD:55703 EMBL:AAEX03007377 RefSeq:XP_531760.2
Ensembl:ENSCAFT00000002941 GeneID:474531 KEGG:cfa:474531
NextBio:20850526 Uniprot:E2RHZ2
Length = 1133
Score = 724 (259.9 bits), Expect = 1.5e-72, Sum P(2) = 1.5e-72
Identities = 201/662 (30%), Positives = 338/662 (51%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPR 63
E W ++ A+ KGLV+Q +DSF+ FI + +++I++ + ++ A+ P
Sbjct: 24 EEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDAD-----------PM 72
Query: 64 YLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQ 123
+ LK+ IY+ P E P+ P+E RLR++TYSAP+ VDI T +G + +
Sbjct: 73 WYLKYLNIYVGLPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYT---RGSQRIIRN 129
Query: 124 HQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATN 183
IG++PIMLRS+ C+L G T + +LNECPLDPGGYFI+ G EKV++ QE+++ N
Sbjct: 130 ALP--IGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKN 187
Query: 184 TVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQS-LKKSAIGQRIIAILPY 242
+ V + D K + S T NM + G+ L+ + + + I ++ +
Sbjct: 188 RIIVEA--DRKGTVGASVTSSTHEKKSRT-----NMAVKQGRFYLRHNTLSEDIPIVIIF 240
Query: 243 IKQEIPI-MIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFI 301
+ + + +G EH++ F P + E K + +Q N +
Sbjct: 241 KAMGVESDQEIVQMIGTE------EHVMAAFG-PSLEECQKAQIFTQ--MQALKYIGNKV 291
Query: 302 GARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRE 361
+ G K+ +I+ ARE+L +L HV V +F K + MV R++LA G +
Sbjct: 292 RRQRMWGGGPKKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQ-GDNK 350
Query: 362 LDDRDHY----VRMYAQK----FIDRGKDFNLELA-IKTKII------------------ 394
+DDRD+Y + + Q F D K FN E+ I ++I
Sbjct: 351 VDDRDYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQDQ 410
Query: 395 -TDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPR 453
T+G+ +++TGNW K+ R GV+QVL+RL++ S+L + R++S + K++ PR
Sbjct: 411 ITNGMVNAISTGNWS-LKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPR 469
Query: 454 QLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPS 513
L + WGM+CP++TPEG A GLVKNLALM +I+ + PI++ +E++ +
Sbjct: 470 SLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLLCGE 529
Query: 514 AIA--DATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSXXXXXXXXXXXXHTD 571
++ + +F+NG +G+ RD ++L+ T R +RR I VS +D
Sbjct: 530 ELSYPNVFLVFLNGNILGVIRDHKKLVNTFRLMRRA-GYINEFVSISTNLTDRCVYISSD 588
Query: 572 AGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAM 631
GR+CRP +I + + +H++ L + Y N+ + + +VEY+D EE IA+
Sbjct: 589 GGRLCRPYIIVKKQKPAVTNKHMEELAQ-GYRNF--EDFLHESLVEYLDVNEENDCNIAL 645
Query: 632 WQ 633
++
Sbjct: 646 YE 647
Score = 40 (19.1 bits), Expect = 1.5e-72, Sum P(2) = 1.5e-72
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 622 LEEETTMIAMWQVLVQSGVVEYIDTLEEETTMIAM 656
+EE ++ + +VEY+D EE IA+
Sbjct: 611 MEELAQGYRNFEDFLHESLVEYLDVNEENDCNIAL 645
>WB|WBGene00017300 [details] [associations]
symbol:rpc-2 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0006915
"apoptotic process" evidence=IMP] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0006915
GO:GO:0002119 GO:GO:0003677 GO:GO:0000003 GO:GO:0006351
GO:GO:0003899 EMBL:FO081001 HSSP:P08518 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000222962 KO:K03021 GeneTree:ENSGT00690000102214
OMA:DMIMNPH PIR:T16011 RefSeq:NP_498192.2 ProteinModelPortal:Q27492
STRING:Q27492 PaxDb:Q27492 EnsemblMetazoa:F09F7.3.1
EnsemblMetazoa:F09F7.3.2 GeneID:175767 KEGG:cel:CELE_F09F7.3
UCSC:F09F7.3.1 CTD:175767 WormBase:F09F7.3 InParanoid:Q27492
NextBio:889574 Uniprot:Q27492
Length = 1154
Score = 408 (148.7 bits), Expect = 1.1e-68, Sum P(2) = 1.1e-68
Identities = 90/247 (36%), Positives = 146/247 (59%)
Query: 389 IKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGK 448
++ +IT+ + +++TGNW K+ R GV+QVL+RL++ S+L + R+NS + K
Sbjct: 419 MRQDMITNTIVNAMSTGNW-IIKRFRMERLGVTQVLSRLSYISALGMMTRINSTFEKTRK 477
Query: 449 LAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLE 508
++ PR L + WGM+CP++TPEG A GLVKNLAL+++I+ S P+L L +E+L
Sbjct: 478 VSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALISHITTDSDEKPVLRLLLNSGVEDLH 537
Query: 509 EIAPSAI--ADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSE-VSXXXXXXXXX 565
+ S + + T IF+NG +G DPE+++ +R LRR ++SE VS
Sbjct: 538 NVHFSHVNKPENTLIFLNGVLIGTAVDPERVVKAVRDLRRSG--LLSEFVSVSRSLTNRS 595
Query: 566 XXXHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEE 625
+D GR+CRP +I +NG+ +L + H+ LKE ++ V G+VEY+D E
Sbjct: 596 VFISSDGGRLCRPYIIVKNGTPMLTQAHVQELKE---GKMIFEDFVDDGIVEYLDVNEMN 652
Query: 626 TTMIAMW 632
+IA++
Sbjct: 653 DALIAVY 659
Score = 368 (134.6 bits), Expect = 1.1e-68, Sum P(2) = 1.1e-68
Identities = 113/374 (30%), Positives = 189/374 (50%)
Query: 7 WIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPRYLL 66
W+++ A+ +GLV+Q L SFD F+Q ++ I+ + +I TS + P + L
Sbjct: 29 WLLVPAFLKVRGLVKQHLVSFDHFVQEEIRSIMLSNQKI--------TS---DANPNFYL 77
Query: 67 KFEQIYLSKPTHWEK-DGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQ 125
K+ I + KP+ E + + + P E RLR++TYSAP+ VDI T +G + V +
Sbjct: 78 KYLDIRIGKPSSEEGLNMTHDKITPQECRLRDMTYSAPISVDIEYT---RGNQRVFKKDL 134
Query: 126 KSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTV 185
IG++PIMLRS+ C+L L + +L + ECP DPGGYF++ GSEKV++ QE+++ N +
Sbjct: 135 --IIGRMPIMLRSSKCILRDLAEEELARVQECPYDPGGYFVVKGSEKVILIQEQLSKNRI 192
Query: 186 YVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQ 245
V ++S + E+ S S R + T +V M +G S++ + + + + I +
Sbjct: 193 MVG--RNSSKELQCEVLSST--SERKSKT-YVTMK-KGKYSVRHNQLTDDVPVSI--IFK 244
Query: 246 EIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVAL--NFIGA 303
+ + F + + E + F + ++ S++ Q+Q +A + + A
Sbjct: 245 AMGVESDFDIVSTIGHE---EKYVSAF-----AQTLEESINAGVYTQQQALAYVTSKVKA 296
Query: 304 R-----GARPG----VTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLL 354
R G+ PG V + A + L M+ H+ D KA +LG M RL+
Sbjct: 297 RKFTPFGSLPGTSVSVLTPPKEHEAVDFLSNSMITHIACPDGNFKMKAIYLGLMTRRLIQ 356
Query: 355 ASLGRRELDDRDHY 368
LG LDDRD Y
Sbjct: 357 TELGENGLDDRDFY 370
Score = 50 (22.7 bits), Expect = 1.4e-30, Sum P(2) = 1.4e-30
Identities = 18/54 (33%), Positives = 27/54 (50%)
Query: 606 GWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDTLEEETTMIAMSPR 659
G +L Q+ V E +E MI ++ V G+VEY+D E +IA+ R
Sbjct: 615 GTPMLTQAHVQEL-----KEGKMI--FEDFVDDGIVEYLDVNEMNDALIAVYGR 661
Score = 40 (19.1 bits), Expect = 1.6e-29, Sum P(2) = 1.6e-29
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 333 VSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYVRMYAQK 375
V D CE A YM +L + + + L ++ +Y QK
Sbjct: 990 VKDVCEELAACGYNYMGKDMLTSGITGQPLSAYIYFGPIYYQK 1032
>CGD|CAL0002357 [details] [associations]
symbol:orf19.5847 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0005666 "DNA-directed RNA polymerase
III complex" evidence=IEA] [GO:0042797 "tRNA transcription from RNA
polymerase III promoter" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 CGD:CAL0002357
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000222962 KO:K03021 EMBL:AACQ01000235 EMBL:AACQ01000236
RefSeq:XP_710802.1 RefSeq:XP_710813.1 STRING:Q59M52 GeneID:3647582
GeneID:3647593 KEGG:cal:CaO19.13269 KEGG:cal:CaO19.5847
Uniprot:Q59M52
Length = 1157
Score = 406 (148.0 bits), Expect = 1.2e-68, Sum P(2) = 1.2e-68
Identities = 109/369 (29%), Positives = 200/369 (54%)
Query: 7 WIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPRYLL 66
W ++ A+ KGLV+Q LDS++ F+ + +++I++ + + ++V+ P + +
Sbjct: 42 WNLLPAFLKVKGLVKQHLDSYNYFVDVDLKKIIKANELV---------LSDVD--PEFYV 90
Query: 67 KFEQIYLS-KPTHWEKDGSPSPMMP-NEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQH 124
K+ I + K T K G ++P +E RLR+LTYSAP+YVD+ T +G + + +H
Sbjct: 91 KYLDIRVGHKST--SKPGVKEVILPPHECRLRDLTYSAPIYVDVEYT---RGRKII--RH 143
Query: 125 QKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNT 184
IG++P+MLRS C+L G+++ + ++ ECPLDPGGYF++NG+EKV++ QE+++ N
Sbjct: 144 NDLEIGRMPVMLRSNKCMLEGMSEATMAQVEECPLDPGGYFVVNGTEKVILVQEQLSKNR 203
Query: 185 VYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIK 244
+ V + K + + S T + N LK ++I +
Sbjct: 204 IIV-EADEKKGIVQASVTSSTHERKSKTYVITKNDKIY----LKHNSISE---------- 248
Query: 245 QEIPIMIVFRALGFVADRDILEHII---YDFDDPEMMEMVKPSLDEAFVIQEQNVALNFI 301
+IPI+I+ +A G V+D +IL+ + ++ D ++ + + E F Q+Q AL ++
Sbjct: 249 -DIPIVIILKAAGIVSDLEILQLVCGSDSNYQDLFVVNFEEAARLEVFT-QQQ--ALYYV 304
Query: 302 GARGA---RPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLG 358
G R R G K +++ E + ++ H+ VSD +KA ++ M R+++A
Sbjct: 305 GKRVKTIRRAGAPKLSQLQEGIEAIATTIIAHLTVSDLQFREKALYIATMARRVVMAMHN 364
Query: 359 RRELDDRDH 367
+ +DDRD+
Sbjct: 365 PKMVDDRDY 373
Score = 370 (135.3 bits), Expect = 1.2e-68, Sum P(2) = 1.2e-68
Identities = 102/347 (29%), Positives = 180/347 (51%)
Query: 319 AREILQKEMLPH-VGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYVRMYAQKFI 377
AR ++ P V D+ K+ G ++ LL L ++ D + +K
Sbjct: 355 ARRVVMAMHNPKMVDDRDYVGNKRLELAGQLMS-LLFEDLFKKFNSDFKANIDKVLKK-P 412
Query: 378 DRGKDFN--LELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSH 435
R +F+ L + I + IT GL +++TGNW K+ RAGV+ VL+RL++ S+L
Sbjct: 413 SRTSEFDALLSINIHSNNITMGLNRAISTGNWS-LKRFKMERAGVTHVLSRLSYISALGM 471
Query: 436 LRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPI 495
+ R++S + K++ PR L + +GM+C A+TPEG A GLVKNLALM +I+ + +P+
Sbjct: 472 MTRISSQFEKSRKVSGPRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITTDDEEAPV 531
Query: 496 LEFLEEWSMENLEEIAPSAI-ADAT-KIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVS 553
+ E + + + + D +++NG +G R P + + R LRR + + +
Sbjct: 532 KKLCIALGCEPIFALDSATLHVDGNFGVYLNGTLIGTTRFPVKFVHDFRHLRR-VGKVSA 590
Query: 554 EVSXXXXXXXXXXXXHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQS 613
+S TD GRICRPL+I ENG + H+ L ++++ + +
Sbjct: 591 FISIYTNTHHQAVHIATDGGRICRPLIIVENGKSKVTAEHLAKLINQEWS---FDDFLTH 647
Query: 614 GVVEYIDTLEEETTMIAMWQ--VLVQSG-VVEYIDTLEEETTMIAMS 657
G+VEY+D EE ++IA+++ + G +V +++ +E T + A++
Sbjct: 648 GLVEYLDVNEENDSLIALYEDDITANPGAIVTHLE-IEPFTVLGAVA 693
>ASPGD|ASPL0000054387 [details] [associations]
symbol:AN0321 species:162425 "Emericella nidulans"
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 EMBL:BN001308 GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
OMA:DMIMNPH EnsemblFungi:CADANIAT00002388 Uniprot:C8VU19
Length = 1225
Score = 375 (137.1 bits), Expect = 9.1e-66, Sum P(3) = 9.1e-66
Identities = 102/323 (31%), Positives = 168/323 (52%)
Query: 319 AREILQ-KEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYVRMYAQKFI 377
AR +L K V D+ K+ G ++ LL L ++ D ++M K +
Sbjct: 423 ARRVLMAKNDAALVDDRDYLGNKRLELAGQLL-ALLFEDLFKKFCFD----IKMNIDKVL 477
Query: 378 D---RGKDFNL--ELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASS 432
+ R + F+ + + + IT G+ +++TGNW K+ RAGV+ VL+RL++ ++
Sbjct: 478 NKRNRVEAFDAWSVIGMHSNHITQGMNRAISTGNWS-LKRFRMERAGVTHVLSRLSYIAA 536
Query: 433 LSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQP 492
L + R++S + K++ PR L + +GMIC A+TPEG A GLVKNLALM +I+ +
Sbjct: 537 LGMMTRISSQFEKTRKVSGPRALQPSQFGMICLADTPEGEACGLVKNLALMTHITTNDEE 596
Query: 493 SPILEFLEEWSMENLEEIAPSAI-ADAT-KIFVNGCWVGIHRDPEQLMGTLRKLRRQMDI 550
PI + E+++ + I A + I +NG + + R P+ + R+LRR M
Sbjct: 597 GPIKNLIFMLGAEDIQTVGGKEIYAPGSYTISINGTPMALTRRPKYFLNAFRRLRR-MGR 655
Query: 551 IVSEVSXXXXXXXXXXXXHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVL 610
I VS TD GRICRPL+I E+G +KK H+ L++ +
Sbjct: 656 ISEFVSIYINHHQRAVHVATDDGRICRPLIIVEDGKSRVKKHHLRKLRD---GTMQFDDF 712
Query: 611 VQSGVVEYIDTLEEETTMIAMWQ 633
+ G+VEY+D EE ++IA+++
Sbjct: 713 LAQGLVEYVDVNEENDSLIAIYE 735
Score = 373 (136.4 bits), Expect = 9.1e-66, Sum P(3) = 9.1e-66
Identities = 114/376 (30%), Positives = 199/376 (52%)
Query: 7 WIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPRYLL 66
W ++ A+ KGLV+Q +DS++ +++ +++IVE S I +++ H + +
Sbjct: 104 WNLLPAFLKVKGLVKQHIDSYNYLVEVQLKKIVESSNTI--RSDVDHN---------FYI 152
Query: 67 KFEQIYLSKPTHWEK------DGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
KF IYL P ++ + S + P+E RLR+ TY+AP+ VD +R G + V
Sbjct: 153 KFTDIYLGFPRRADEPQDVRTEFEESTVTPHECRLRDTTYAAPIQVDFE--YIR-GRQRV 209
Query: 121 TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKM 180
+ + IG++P+MLRS+ C+L T +T LNECPLDPGGYFI+NG+EKV++ QE++
Sbjct: 210 --RRKGVSIGRMPVMLRSSKCVLGNKTPAQMTVLNECPLDPGGYFIVNGTEKVILVQEQL 267
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
+ N + V + D K K +++ + SS + + LKK R+
Sbjct: 268 SKNRIIVET--DPK---KEIVQASVTSSSNERKS-------KSYIILKKD----RLYVKH 311
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHI-----IYDFDDP-EMMEMVKPSLDEAFVIQEQ 294
+ ++IPI+I+ +A+G D++++ + +Y D E +K + F Q+Q
Sbjct: 312 NVLSEDIPIVILLKAMGIHTDKEMMLLVAGVDKVYQEDFAINFEEAIKVGV---FT-QQQ 367
Query: 295 NVALNFIGARGA--RPGVTKER-RIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHR 351
AL++IG+R R ++ R ++ A E + ++ H+ V D KA ++ M R
Sbjct: 368 --ALDWIGSRIKINRKQMSYRRTHVQEAVEAIASVIISHIEVKDMNFRPKAIYVANMARR 425
Query: 352 LLLASLGRRELDDRDH 367
+L+A +DDRD+
Sbjct: 426 VLMAKNDAALVDDRDY 441
Score = 50 (22.7 bits), Expect = 9.1e-66, Sum P(3) = 9.1e-66
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 639 GVVEYIDTLEEETTMIAM 656
G+VEY+D EE ++IA+
Sbjct: 716 GLVEYVDVNEENDSLIAI 733
Score = 37 (18.1 bits), Expect = 1.1e-29, Sum P(2) = 1.1e-29
Identities = 12/49 (24%), Positives = 21/49 (42%)
Query: 369 VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQAR 417
V Q ID+G + + + + I + L + + TG QK H +
Sbjct: 1056 VEQMTQTLIDKGFSYGGKDYLTSGITGEALPFYVFTGPIYYQKLKHMVQ 1104
>UNIPROTKB|E1BRJ4 [details] [associations]
symbol:POLR3B "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0032728 "positive
regulation of interferon-beta production" evidence=IEA] [GO:0045089
"positive regulation of innate immune response" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0045089
GO:GO:0003899 GO:GO:0032728 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03021 GeneTree:ENSGT00690000102214
OMA:DMIMNPH CTD:55703 EMBL:AADN02006293 EMBL:AADN02006294
EMBL:AADN02006295 IPI:IPI00580707 RefSeq:XP_416307.3
UniGene:Gga.54760 Ensembl:ENSGALT00000020649 GeneID:418071
KEGG:gga:418071 Uniprot:E1BRJ4
Length = 1132
Score = 654 (235.3 bits), Expect = 2.2e-65, Sum P(2) = 2.2e-65
Identities = 190/657 (28%), Positives = 325/657 (49%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPR 63
E W ++ A+ KGLV+Q +DSF+ FI + +++I++ + ++ A+ P
Sbjct: 24 EEKWRLLPAFLKVKGLVKQHIDSFNYFINVEIKKIMKANEKVTSDAD-----------PM 72
Query: 64 YLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQ 123
+ LK+ IY+ P E P+ P+E RLR++TYSAP+ VDI T +G + +
Sbjct: 73 WYLKYLNIYVGTPDVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYT---RGSQRIIRN 129
Query: 124 HQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATN 183
IG++PIMLRS+ C+L G T + +LNECPLDPGGYFI+ G EKV++ QE+++ N
Sbjct: 130 ALP--IGRMPIMLRSSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVILIQEQLSKN 187
Query: 184 TVYV---------FSMKDSKYAYKTEI-------RSCLEHSSR----PTSTLWVNMMARG 223
+ V S+ S + K+ R L H++ P + ++ M
Sbjct: 188 RIIVEADRKGTVGASVTSSTHEKKSRTNMVVKQGRFYLRHNTLSEDIPIAIIFKAMGVES 247
Query: 224 GQSLKKSAIGQR---IIAILPYIK--QEIPIMIVFRALGFVADRDILEHIIYDFDDPEMM 278
Q + + IG + A P ++ Q+ I +AL ++ ++ + ++ M
Sbjct: 248 DQEIVQM-IGTEEHVMAAFAPSLEECQKAQIFTQMQALKYIGNK-VRRQRMWGGPKKTKM 305
Query: 279 EMVKPSLDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCE 338
E + L + NF A+ V R I + Q E V D+
Sbjct: 306 EEARELLASTILTHVLVKEFNF-RAKCIYTAVMVRRVI-----LAQGEN--KVDDRDYYG 357
Query: 339 TKKAYFLGYMVHRLLLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDGL 398
K+ G ++ LL L ++ + K R F++ ++ IT+G+
Sbjct: 358 NKRLELAGQLLS-LLFEDLFKKFNSELKKIADQVIPK--QRAAQFDVVKHMRQDQITNGM 414
Query: 399 RYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNT 458
+++TGNW K+ R GV+QVL+RL++ S+L + R++S + K++ PR L +
Sbjct: 415 VNAISTGNWS-LKRFKMDRQGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPS 473
Query: 459 LWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIA-- 516
WGM+CP++TPEG A GLVKNLALM +I+ + PI++ +E++ + ++
Sbjct: 474 QWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIIKLASNLGVEDVNLLCGEELSYP 533
Query: 517 DATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSXXXXXXXXXXXXHTDAGRIC 576
+ +F+NG +G+ RD ++L+ T R +RR I VS +D GR+C
Sbjct: 534 NVFLVFLNGNILGVIRDHQKLVNTFRIMRRA-GYINEFVSISTNLSDRCVYISSDGGRLC 592
Query: 577 RPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQ 633
RP +I + + +H++ L + Y N+ + + G+VEY+D EE IA+++
Sbjct: 593 RPYIIVKKQKPAVTNKHMEELAQ-GYRNF--EDFLHEGLVEYLDVNEENDCNIALYE 646
Score = 46 (21.3 bits), Expect = 2.2e-65, Sum P(2) = 2.2e-65
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 622 LEEETTMIAMWQVLVQSGVVEYIDTLEEETTMIAM 656
+EE ++ + G+VEY+D EE IA+
Sbjct: 610 MEELAQGYRNFEDFLHEGLVEYLDVNEENDCNIAL 644
>FB|FBgn0004463 [details] [associations]
symbol:RpIII128 "RNA polymerase III 128kD subunit"
species:7227 "Drosophila melanogaster" [GO:0006383 "transcription
from RNA polymerase III promoter" evidence=ISS;NAS] [GO:0005666
"DNA-directed RNA polymerase III complex" evidence=ISS] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] [GO:0005634
"nucleus" evidence=NAS] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 EMBL:AE013599 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150 KO:K03021
EMBL:X58826 EMBL:AY121645 PIR:S16894 RefSeq:NP_523706.1
UniGene:Dm.2692 ProteinModelPortal:P25167 SMR:P25167 IntAct:P25167
MINT:MINT-285299 STRING:P25167 PaxDb:P25167
EnsemblMetazoa:FBtr0087977 GeneID:36289 KEGG:dme:Dmel_CG8344
CTD:36289 FlyBase:FBgn0004463 GeneTree:ENSGT00690000102214
InParanoid:P25167 OMA:DMIMNPH OrthoDB:EOG4C2FRC PhylomeDB:P25167
ChiTaRS:RpIII128 GenomeRNAi:36289 NextBio:797763 Bgee:P25167
GermOnline:CG8344 Uniprot:P25167
Length = 1137
Score = 400 (145.9 bits), Expect = 8.4e-61, Sum P(2) = 8.4e-61
Identities = 103/312 (33%), Positives = 172/312 (55%)
Query: 354 LASLGRRELDDRDHY-VRMYAQKFIDRGK--DFNLELAIKTKIITDGLRYSLATGNWGDQ 410
L S+ +L R ++ ++ A K I + K F++ ++ IT GL ++++GNW
Sbjct: 375 LLSMMFEDLFKRMNWELKTIADKNIPKVKAAQFDVVKHMRAAQITAGLESAISSGNW-TI 433
Query: 411 KKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPE 470
K+ RAGV+QVL+RL++ S+L + RVNS + K++ PR L + WGM+CP++TPE
Sbjct: 434 KRFKMERAGVTQVLSRLSYISALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPSDTPE 493
Query: 471 GAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIADATK--IFVNGCWV 528
G A GLVKNLALM +I+ + P++ +E++ E++ + I + +F+NG +
Sbjct: 494 GEACGLVKNLALMTHITTEVEERPVMIVAFNAGVEDIREVSGNPINNPNVFLVFINGNVL 553
Query: 529 GIHRDPEQLMGTLRKLRRQMDIIVSEVSXXXXXXXXXXXXHTDAGRICRPLLIAENGSLL 588
G+ + + L+ LR +RR+ + S VS HTD GR+CRP +I EN L
Sbjct: 554 GLTLNHKHLVRNLRYMRRK-GRMGSYVSVHTSYTQRCIYIHTDGGRLCRPYVIVENRRPL 612
Query: 589 LKKRHIDNLKE--RDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDT 646
+K+ H+D L R ++++ + G++EY+D EE + IA W D
Sbjct: 613 VKQHHLDELNRGIRKFDDF-----LLDGLIEYLDVNEENDSFIA-WNE----------DQ 656
Query: 647 LEEETTMIAMSP 658
+E+ TT + + P
Sbjct: 657 IEDRTTHLEIEP 668
Score = 302 (111.4 bits), Expect = 8.4e-61, Sum P(2) = 8.4e-61
Identities = 64/177 (36%), Positives = 106/177 (59%)
Query: 7 WIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPRYLL 66
W ++ A+ KGLV+Q +DSF+ FI + +++IV+ + + A+ P + L
Sbjct: 35 WKLVPAFLQVKGLVKQHIDSFNHFINVDIKKIVKANELVTSGAD-----------PLFYL 83
Query: 67 KFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQK 126
K+ + + KP + P+E RLR+ TYSAP+ VDI T +G + + +
Sbjct: 84 KYLDVRVGKPDIDDGFNITKATTPHECRLRDTTYSAPITVDIEYT---RGTQRI--KRNN 138
Query: 127 SFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATN 183
IG++P+MLR + C L G ++ +L++LNECPLDPGGYF++ G EKV++ QE+++ N
Sbjct: 139 LLIGRMPLMLRCSNCALTGKSEFELSKLNECPLDPGGYFVVRGQEKVILIQEQLSWN 195
Score = 286 (105.7 bits), Expect = 4.1e-59, Sum P(2) = 4.1e-59
Identities = 79/245 (32%), Positives = 135/245 (55%)
Query: 129 IGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVF 188
IG++P+MLR + C L G ++ +L++LNECPLDPGGYF++ G EKV++ QE+++ N +
Sbjct: 141 IGRMPLMLRCSNCALTGKSEFELSKLNECPLDPGGYFVVRGQEKVILIQEQLSWNKMLT- 199
Query: 189 SMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIP 248
+D + ++ S H + + TL ++ G LK +++ +IP
Sbjct: 200 --EDFNGVVQCQVTSST-HEKK-SRTLVLSK--HGKYYLKHNSM-----------TDDIP 242
Query: 249 IMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQ--EQNVALNFIGARGA 306
I+++F+ALG V+D++I I D + SL +A+ ++ Q AL ++G++
Sbjct: 243 IVVIFKALGVVSDQEIQSLIGID---SKSQNRFGASLIDAYNLKVFTQQRALEYMGSKLV 299
Query: 307 --R-PGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELD 363
R T + + ARE+L +L HV V +F KA ++ MV R++ A L + D
Sbjct: 300 VKRFQSATTKTPSEEARELLLTTILAHVPVDNFNLQMKAIYVSMMVRRVMAAELDKTLFD 359
Query: 364 DRDHY 368
DRD+Y
Sbjct: 360 DRDYY 364
>GENEDB_PFALCIPARUM|PFL0330c [details] [associations]
symbol:PFL0330c "DNA-directed RNA polymerase III
subunit, putative" species:5833 "Plasmodium falciparum" [GO:0005666
"DNA-directed RNA polymerase III complex" evidence=ISS] [GO:0006383
"transcription from RNA polymerase III promoter" evidence=ISS]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 EMBL:AE014188 GO:GO:0006383
GO:GO:0005666 GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 HOGENOM:HOG000222962 KO:K03021 OMA:IRRIIMA
RefSeq:XP_001350475.1 ProteinModelPortal:Q8I5X9
EnsemblProtists:PFL0330c:mRNA GeneID:811119 KEGG:pfa:PFL0330c
EuPathDB:PlasmoDB:PF3D7_1206600 ProtClustDB:CLSZ2444941
Uniprot:Q8I5X9
Length = 1450
Score = 381 (139.2 bits), Expect = 4.1e-60, Sum P(2) = 4.1e-60
Identities = 87/242 (35%), Positives = 140/242 (57%)
Query: 393 IITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKP 452
IIT G++ +++TGNW + K+ ++GVSQVL+RL+F + + + R+NS + K++ P
Sbjct: 655 IITRGMQTAISTGNW-NIKRFKMEKSGVSQVLSRLSFIACIGMMTRLNSQFEKGRKVSGP 713
Query: 453 RQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSP-ILEFLEEWSMENLEEIA 511
R L + WG++CP +TPEG + GLVKNLALM +++ ++ + ++E L +E+ + +
Sbjct: 714 RALQPSQWGVLCPCDTPEGESCGLVKNLALMTHVTNDNENNENLIEILYTLGVEDSDSLT 773
Query: 512 PSAIADATKIFV--NGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSXXXXXXXXXXXXH 569
I FV NG +G+H+ P++ M +R LRR I VS
Sbjct: 774 GEEIYKEGVFFVILNGILLGVHKRPQKFMQRIRYLRRYGKI-GQFVSIYDNFLHNAIYIS 832
Query: 570 TDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMI 629
TD GR+CRPL+I ENG L +HI L+ N + L++S V+E+ID E+ +I
Sbjct: 833 TDGGRLCRPLIIIENGKSKLLPQHIKALENGTINFFD---LLKSSVIEWIDVNEQNNLLI 889
Query: 630 AM 631
A+
Sbjct: 890 AL 891
Score = 320 (117.7 bits), Expect = 4.1e-60, Sum P(2) = 4.1e-60
Identities = 99/370 (26%), Positives = 191/370 (51%)
Query: 7 WIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPRYLL 66
W ++ AY KGLV+Q ++S++ FI+ ++ I+ + ++++ + +
Sbjct: 243 WKLLPAYLKVKGLVKQHIESYNYFIKREIKTIMNATTNKIIKSDIDE---------HFYV 293
Query: 67 KFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQK 126
+F I + P+ E++ + + P R R+LTYSAP+YVD+ +G +T + +
Sbjct: 294 EFLDITVGTPSV-EENMIETKLTPQICRQRDLTYSAPIYVDVEYV---KGNSIITKNNVE 349
Query: 127 SFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVY 186
IG++P+MLRS C+LN ++ +L +L ECP DPGGYFI+ G+E+VL+ QE+++ N +
Sbjct: 350 --IGRLPVMLRSDICVLNNKSEEELMKLGECPYDPGGYFIVKGTERVLLMQEQLSKNRII 407
Query: 187 VFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQE 246
V M D K+ I S S + ++ N + IG + IL + E
Sbjct: 408 V-EM-DIKHNICATITSTTAESKSRCAIVYKNNKLYLKHNSFIEDIG--VCIILRAMGYE 463
Query: 247 IPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGA 306
+F+ +G + ++ + I+ + E +K +LD I ++ + + A+G
Sbjct: 464 SD-QEIFQMIG--SHKNYVNGILLSLYEL-YNENIKTNLDALLYIGKK-IRPRLL-AKGF 517
Query: 307 RPGVTKERRIKYAREILQ-------KEMLPHVGV-SDFCETKKAYFLGYMVHRLLLASLG 358
+ KE+++K ++I++ + +L H+ S + KA + M+ R+L ++
Sbjct: 518 FSSM-KEKQVKNEKDIIEEGLDFLSRVLLSHIQQKSKYDFRNKARCICLMIRRVLDSANN 576
Query: 359 RRELDDRDHY 368
+ E+DD+D+Y
Sbjct: 577 KNEIDDKDYY 586
Score = 53 (23.7 bits), Expect = 3.5e-25, Sum P(2) = 3.5e-25
Identities = 15/53 (28%), Positives = 32/53 (60%)
Query: 609 VLVQSG----VVEYIDTLEEETTMIAMWQVLVQSGVVEYIDTLEEETTMIAMS 657
+++++G + ++I LE T I + +L +S V+E+ID E+ +IA++
Sbjct: 843 IIIENGKSKLLPQHIKALENGT--INFFDLL-KSSVIEWIDVNEQNNLLIALN 892
>UNIPROTKB|Q8I5X9 [details] [associations]
symbol:PFL0330c "DNA-directed RNA polymerase" species:36329
"Plasmodium falciparum 3D7" [GO:0005666 "DNA-directed RNA
polymerase III complex" evidence=ISS] [GO:0006383 "transcription
from RNA polymerase III promoter" evidence=ISS] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 EMBL:AE014188 GO:GO:0006383 GO:GO:0005666
GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000222962 KO:K03021 OMA:IRRIIMA RefSeq:XP_001350475.1
ProteinModelPortal:Q8I5X9 EnsemblProtists:PFL0330c:mRNA
GeneID:811119 KEGG:pfa:PFL0330c EuPathDB:PlasmoDB:PF3D7_1206600
ProtClustDB:CLSZ2444941 Uniprot:Q8I5X9
Length = 1450
Score = 381 (139.2 bits), Expect = 4.1e-60, Sum P(2) = 4.1e-60
Identities = 87/242 (35%), Positives = 140/242 (57%)
Query: 393 IITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKP 452
IIT G++ +++TGNW + K+ ++GVSQVL+RL+F + + + R+NS + K++ P
Sbjct: 655 IITRGMQTAISTGNW-NIKRFKMEKSGVSQVLSRLSFIACIGMMTRLNSQFEKGRKVSGP 713
Query: 453 RQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSP-ILEFLEEWSMENLEEIA 511
R L + WG++CP +TPEG + GLVKNLALM +++ ++ + ++E L +E+ + +
Sbjct: 714 RALQPSQWGVLCPCDTPEGESCGLVKNLALMTHVTNDNENNENLIEILYTLGVEDSDSLT 773
Query: 512 PSAIADATKIFV--NGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSXXXXXXXXXXXXH 569
I FV NG +G+H+ P++ M +R LRR I VS
Sbjct: 774 GEEIYKEGVFFVILNGILLGVHKRPQKFMQRIRYLRRYGKI-GQFVSIYDNFLHNAIYIS 832
Query: 570 TDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMI 629
TD GR+CRPL+I ENG L +HI L+ N + L++S V+E+ID E+ +I
Sbjct: 833 TDGGRLCRPLIIIENGKSKLLPQHIKALENGTINFFD---LLKSSVIEWIDVNEQNNLLI 889
Query: 630 AM 631
A+
Sbjct: 890 AL 891
Score = 320 (117.7 bits), Expect = 4.1e-60, Sum P(2) = 4.1e-60
Identities = 99/370 (26%), Positives = 191/370 (51%)
Query: 7 WIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPRYLL 66
W ++ AY KGLV+Q ++S++ FI+ ++ I+ + ++++ + +
Sbjct: 243 WKLLPAYLKVKGLVKQHIESYNYFIKREIKTIMNATTNKIIKSDIDE---------HFYV 293
Query: 67 KFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQK 126
+F I + P+ E++ + + P R R+LTYSAP+YVD+ +G +T + +
Sbjct: 294 EFLDITVGTPSV-EENMIETKLTPQICRQRDLTYSAPIYVDVEYV---KGNSIITKNNVE 349
Query: 127 SFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVY 186
IG++P+MLRS C+LN ++ +L +L ECP DPGGYFI+ G+E+VL+ QE+++ N +
Sbjct: 350 --IGRLPVMLRSDICVLNNKSEEELMKLGECPYDPGGYFIVKGTERVLLMQEQLSKNRII 407
Query: 187 VFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQE 246
V M D K+ I S S + ++ N + IG + IL + E
Sbjct: 408 V-EM-DIKHNICATITSTTAESKSRCAIVYKNNKLYLKHNSFIEDIG--VCIILRAMGYE 463
Query: 247 IPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQNVALNFIGARGA 306
+F+ +G + ++ + I+ + E +K +LD I ++ + + A+G
Sbjct: 464 SD-QEIFQMIG--SHKNYVNGILLSLYEL-YNENIKTNLDALLYIGKK-IRPRLL-AKGF 517
Query: 307 RPGVTKERRIKYAREILQ-------KEMLPHVGV-SDFCETKKAYFLGYMVHRLLLASLG 358
+ KE+++K ++I++ + +L H+ S + KA + M+ R+L ++
Sbjct: 518 FSSM-KEKQVKNEKDIIEEGLDFLSRVLLSHIQQKSKYDFRNKARCICLMIRRVLDSANN 576
Query: 359 RRELDDRDHY 368
+ E+DD+D+Y
Sbjct: 577 KNEIDDKDYY 586
Score = 53 (23.7 bits), Expect = 3.5e-25, Sum P(2) = 3.5e-25
Identities = 15/53 (28%), Positives = 32/53 (60%)
Query: 609 VLVQSG----VVEYIDTLEEETTMIAMWQVLVQSGVVEYIDTLEEETTMIAMS 657
+++++G + ++I LE T I + +L +S V+E+ID E+ +IA++
Sbjct: 843 IIIENGKSKLLPQHIKALENGT--INFFDLL-KSSVIEWIDVNEQNNLLIALN 892
>TAIR|locus:2153323 [details] [associations]
symbol:NRPC2 "nuclear RNA polymerase C2" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=ISM]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0009560
"embryo sac egg cell differentiation" evidence=RCA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 EMBL:CP002688 GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03021 OMA:DMIMNPH IPI:IPI00530040 RefSeq:NP_199327.4
UniGene:At.9250 ProteinModelPortal:F4KD38 PRIDE:F4KD38
EnsemblPlants:AT5G45140.1 GeneID:834550 KEGG:ath:AT5G45140
Uniprot:F4KD38
Length = 1161
Score = 611 (220.1 bits), Expect = 1.3e-58, P = 1.3e-58
Identities = 192/681 (28%), Positives = 348/681 (51%)
Query: 9 VINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPRYLLKF 68
++ + +GLV+Q LDSF+ FI + + +IV+ + +I TST V+ P L+F
Sbjct: 35 LVPEFLKVRGLVKQHLDSFNYFINVGIHKIVKANSRI--------TST-VD--PSIYLRF 83
Query: 69 EQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSF 128
+++ + +P+ + + + P+ RL ++TY+AP++V+I G + + +
Sbjct: 84 KKVRVGEPSIINVN-TVENINPHMCRLADMTYAAPIFVNIEYVHGSHGNKAKSAK-DNVI 141
Query: 129 IGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVF 188
IG++PIMLRS C+L+G + +L L ECPLDPGGYFII G+EKVL+ QE+++ N + +
Sbjct: 142 IGRMPIMLRSCRCVLHGKDEEELARLGECPLDPGGYFIIKGTEKVLLIQEQLSKNRIIID 201
Query: 189 SMK----DSKYAYKTEI---RSCLE----------HSSRPTSTLWVNMMARGGQSLKK-- 229
S K ++ TE+ ++ ++ H + + + A G +S ++
Sbjct: 202 SDKKGNINASVTSSTEMTKSKTVIQMEKEKIYLFLHRFVKKIPIIIVLKAMGMESDQEIV 261
Query: 230 SAIGQ--RIIA-ILPYIKQEIP--IMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPS 284
+G+ R A +LP I++ + + +AL ++ + ++ I Y PE
Sbjct: 262 QMVGRDPRFSASLLPSIEECVSEGVNTQKQALDYLEAK--VKKISYG-TPPEKDGRALSI 318
Query: 285 LDEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYF 344
L + F+ NF + GV R I+ +L K+ + D+ K+
Sbjct: 319 LRDLFLAHVPVPDNNF-RQKCFYVGVMLRRMIE---AMLNKDAMDD---KDYVGNKRLEL 371
Query: 345 LGYMVHRLLLASLGRRELDDRDHYVRMYAQKFIDRGK-DFNLELAIKTKI-ITDGLRYSL 402
G ++ LL L + L + V K I + DF+ L ++ I+ GL +L
Sbjct: 372 SGQLIS-LLFEDLFKTMLSEAIKNVDHILNKPIRASRFDFSQCLNKDSRYSISLGLERTL 430
Query: 403 ATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHNTLWGM 462
+TGN+ D K+ R G++QVL RL+F S+ + +++ + K++ PR L + WGM
Sbjct: 431 STGNF-DIKRFRMHRKGMTQVLTRLSFIGSMGFITKISPQFEKSRKVSGPRSLQPSQWGM 489
Query: 463 ICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAI--ADATK 520
+CP +TPEG + GLVKNLALM +++ + P++ + + +LE ++ + D+
Sbjct: 490 LCPCDTPEGESCGLVKNLALMTHVTTDEEEGPLVAMCYKLGVTDLEVLSAEELHTPDSFL 549
Query: 521 IFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSE-VSXXXXXXXXXXXXHTDAGRICRPL 579
+ +NG +G H P+ +LR+LRR I E VS +D GR+CRPL
Sbjct: 550 VILNGLILGKHSRPQYFANSLRRLRRAGKI--GEFVSVFTNEKQHCVYVASDVGRVCRPL 607
Query: 580 LIAENGSLLLKKRHIDNLKE--RDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQ 637
+IA+ G +K+ H+ L++ R ++++ ++ G++EY+D EE +IA+++
Sbjct: 608 VIADKGISRVKQHHMKELQDGVRTFDDF-----IRDGLIEYLDVNEENNALIALYESDGT 662
Query: 638 SGVVEYIDTLEEETTMIAMSP 658
+ + E + + +TT I + P
Sbjct: 663 TELDEGAEAAKADTTHIEIEP 683
>DICTYBASE|DDB_G0288449 [details] [associations]
symbol:rpc2 "RNA polymerase III, second largest
subunit" species:44689 "Dictyostelium discoideum" [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0016539 "intein-mediated
protein splicing" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA;ISS] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006360 "transcription from RNA polymerase I
promoter" evidence=ISS] [GO:0005736 "DNA-directed RNA polymerase I
complex" evidence=ISS] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0016779 "nucleotidyltransferase activity"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR006141 InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PROSITE:PS50817
PROSITE:PS50818 dictyBase:DDB_G0288449 PANTHER:PTHR20856
GO:GO:0046872 GO:GO:0003677 GenomeReviews:CM000154_GR
EMBL:AAFI02000111 GO:GO:0006360 GO:GO:0005736 GO:GO:0003899
InterPro:IPR003587 SMART:SM00306 GO:GO:0016539 TIGRFAMs:TIGR01443
TIGRFAMs:TIGR01445 HSSP:P08518 eggNOG:COG0085 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 RefSeq:XP_636731.1
STRING:Q54IZ9 EnsemblProtists:DDB0216313 GeneID:8626608
KEGG:ddi:DDB_G0288449 KO:K03021 OMA:IRRIIMA Uniprot:Q54IZ9
Length = 1608
Score = 445 (161.7 bits), Expect = 4.4e-55, Sum P(2) = 4.4e-55
Identities = 148/545 (27%), Positives = 259/545 (47%)
Query: 4 EACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPR 63
E W ++ A+ +GLV+Q +DSF+ FI + +++IV+ + ++ E P
Sbjct: 37 EEKWKLVPAFMKCRGLVKQHIDSFNFFINVEMKKIVKANERLT-----------AENDPS 85
Query: 64 YLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQ 123
Y ++F I + PT E + + P RLR++TYSAP++V+I T +Q + ++
Sbjct: 86 YFVRFTDINVGSPTSTEDNLDSVQLTPQRCRLRDMTYSAPIFVNIEYTRNKQ----IISK 141
Query: 124 HQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATN 183
IG IPIMLRS+ C+L+ T + L ECP+DPGGYFI+ G EKV++ E+++ N
Sbjct: 142 RDVH-IGNIPIMLRSSNCVLSKKTPEQMAALGECPMDPGGYFIVRGQEKVILNHEQLSKN 200
Query: 184 TVYV---------FSMKDSKYAYKTEI-------RSCLEHSSR----PTSTLWVNMMARG 223
+ + S+ S + K+ + L+H++ P + + M
Sbjct: 201 RIIIEMDSKGLPSASVTSSTHERKSRTGVTLKNEKLYLKHNTFGEDIPVAIVLKGMGVET 260
Query: 224 GQSLKKSAIGQRII--AILPYIK--QEIPIMIVFRALGFVADRDILEHIIYDFDDPEMME 279
Q + + + AI P ++ Q+ + +AL ++ R I F P ++
Sbjct: 261 DQEMAQLVGSDDVFLNAITPSLEECQKCGVHTAAQALDYLGSR------IKVFRRPYGVQ 314
Query: 280 MVKPSLDEAFVIQEQNVALNFIGAR--GARPGVTKERRIKYAREILQKEMLPHVGVSDFC 337
K +EA I V LN + R R V + R I+ + + D+
Sbjct: 315 NKKTKSEEARDILA-GVVLNHVPVRRYNFRLKVIY-LSLMIRRIIMASKDKSCLDDKDYY 372
Query: 338 ETKKAYFLGYMVHRLLLASLGRRELDDRDHYVRMYAQKFIDRGKDFNLELAIKTKIITDG 397
K+ G ++ LL ++ + V K +R ++ +L I+T IT+G
Sbjct: 373 GNKRIELSGQLIS-LLFEDCFKKFQSELKKSVDQAIAK-ANRAENLDLPKLIRTDTITNG 430
Query: 398 LRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRDGKLAKPRQLHN 457
+++++G W + K+ R+GVSQVL+RL++ S + + R+ S + K+A PR L
Sbjct: 431 FTHAISSGQW-NLKRFRMERSGVSQVLSRLSYISCMGMMTRIQSQFEKTRKVAGPRSLQP 489
Query: 458 TLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAIAD 517
+ WGM+CP++TPEG A + M+ Q PI + + S+ L+ I A
Sbjct: 490 SQWGMLCPSDTPEGEACLHPDTIITMS----NGQQKPIRQLKDGDSIITLDPITMEA--H 543
Query: 518 ATKIF 522
+T+I+
Sbjct: 544 STRIY 548
Score = 200 (75.5 bits), Expect = 4.4e-55, Sum P(2) = 4.4e-55
Identities = 47/167 (28%), Positives = 87/167 (52%)
Query: 475 GLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIAPSAI--ADATKIFVNGCWVGIHR 532
GLVKN ALM++++ P+L ++++ + + +A + +NG +GIH
Sbjct: 971 GLVKNFALMSHVTTDDSEGPLLRLAYNLGVQDILLVTGEELNSRNAYLVLLNGQIIGIHN 1030
Query: 533 DPEQLMGTLRKLRRQMDIIVSEVSXXXXXXXXXXXXHTDAGRICRPLLIAENGSLLLKKR 592
P+ + TLRK+RR I VS D GR+CRP++I ++ L +
Sbjct: 1031 SPDYFVTTLRKMRRA-GRIREFVSICKNKAQQTISVACDGGRLCRPVIIVDDQRPRLTQE 1089
Query: 593 HIDNLKE--RDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQ 637
HI++LK+ R ++++ ++ G++EY+D EE + +A + +Q
Sbjct: 1090 HIEDLKDGLRTFDDF-----IREGIIEYLDVNEENDSFLAWREAAIQ 1131
Score = 51 (23.0 bits), Expect = 2.0e-39, Sum P(2) = 2.0e-39
Identities = 10/39 (25%), Positives = 23/39 (58%)
Query: 617 EYIDTLEEETTMIAMWQVLVQSGVVEYIDTLEEETTMIA 655
E+I+ L++ + + ++ G++EY+D EE + +A
Sbjct: 1089 EHIEDLKDG---LRTFDDFIREGIIEYLDVNEENDSFLA 1124
Score = 43 (20.2 bits), Expect = 6.1e-11, Sum P(2) = 6.1e-11
Identities = 16/51 (31%), Positives = 24/51 (47%)
Query: 367 HYVRMYAQKFIDRGKDFNLELA-IKT----KII-TDGLRYSLATGNWGDQK 411
H R+Y+ FI + +L I T +II T+ R+ + GNW K
Sbjct: 543 HSTRIYSH-FIKSSSQYGKQLLKITTITGKEIICTNDHRFLTSNGNWKQSK 592
>TAIR|locus:2095233 [details] [associations]
symbol:NRPD2A "nuclear RNA polymerase D2A" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA;ISS]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0031047
"gene silencing by RNA" evidence=IMP] [GO:0000418 "DNA-directed RNA
polymerase IV complex" evidence=IDA;IPI] [GO:0005720 "nuclear
heterochromatin" evidence=IDA] [GO:0006306 "DNA methylation"
evidence=IMP;IDA] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=IGI;IMP] [GO:0000419 "DNA-directed RNA
polymerase V complex" evidence=IDA;IPI] [GO:0030880 "RNA polymerase
complex" evidence=IPI] [GO:0035194 "posttranscriptional gene
silencing by RNA" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0050776 "regulation of immune response"
evidence=IMP] [GO:0050832 "defense response to fungus"
evidence=IMP] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 PANTHER:PTHR20856 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0050776 GO:GO:0006355 GO:GO:0050832
GO:GO:0046872 GO:GO:0003677 GO:GO:0005720 EMBL:AP000377
GO:GO:0006351 UniGene:At.37653 GO:GO:0030422 GO:GO:0006306
GO:GO:0003899 GO:GO:0000418 GO:GO:0000419 HSSP:P08518
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000222962 EMBL:AY862891 EMBL:AY935711 EMBL:AK176111
IPI:IPI00546801 RefSeq:NP_001189957.1 RefSeq:NP_189020.2
ProteinModelPortal:Q9LK40 SMR:Q9LK40 STRING:Q9LK40 PaxDb:Q9LK40
PRIDE:Q9LK40 EnsemblPlants:AT3G23780.1 EnsemblPlants:AT3G23780.2
GeneID:821960 KEGG:ath:AT3G23780 GeneFarm:4224 TAIR:At3g23780
InParanoid:Q9LK40 KO:K16252 OMA:CRICESA PhylomeDB:Q9LK40
ProtClustDB:CLSN2681572 Genevestigator:Q9LK40 Uniprot:Q9LK40
Length = 1172
Score = 549 (198.3 bits), Expect = 2.9e-54, Sum P(2) = 2.9e-54
Identities = 187/680 (27%), Positives = 320/680 (47%)
Query: 3 QEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPP 62
Q C ++FD+ GL+ QL+S++ FI+ +Q + + ++ ++ + +
Sbjct: 32 QSFCKKAATSFFDKYGLISHQLNSYNYFIEHGLQNVFQSFGEMLVEPSFDVVKKK-DNDW 90
Query: 63 RYL-LKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDIT-----KTVVRQ- 115
RY +KF ++ + KPT + D +P ARL+N+TYSA + V++ TVV+
Sbjct: 91 RYATVKFGEVTVEKPTFFSDD-KELEFLPWHARLQNMTYSARIKVNVQVEVFKNTVVKSD 149
Query: 116 ----GEEP------VTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYF 165
G++ + + Q IG IP+M++S C + ++ + +C D GGYF
Sbjct: 150 KFKTGQDNYVEKKILDVKKQDILIGSIPVMVKSILCKTSE-KGKENCKKGDCAFDQGGYF 208
Query: 166 IINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQ 225
+I G+EKV IAQE+M T +++ S ++++E + +R L N A +
Sbjct: 209 VIKGAEKVFIAQEQMCTKRLWI-SNSPWTVSFRSENKR-----NRFIVRLSENEKA---E 259
Query: 226 SLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSL 285
K+ ++++ + ++ EIP+ ++F ALG +D++ ++ I +D DD + + S+
Sbjct: 260 DYKRR---EKVLTVY-FLSTEIPVWLLFFALGVSSDKEAMDLIAFDGDDASITNSLIASI 315
Query: 286 DEAFVIQEQ----NVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKK 341
A + E N AL ++ + TK + E L + P G+ KK
Sbjct: 316 HVADAVCEAFRCGNNALTYVEQQIKS---TKFPPAESVDECLHLYLFP--GLQSL--KKK 368
Query: 342 AYFLGYMVHRLLLASLGRRELDDRDHY---------------VRMYA-----------QK 375
A FLGYMV LL + G+R+ ++RD + +R++ QK
Sbjct: 369 ARFLGYMVKCLLNSYAGKRKCENRDSFRNKRIELAGELLEREIRVHLAHARRKMTRAMQK 428
Query: 376 FIDRGKDFN-LELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLS 434
+ D +E + +IT+GL + +TG W + + +GV L R +L
Sbjct: 429 HLSGDGDLKPIEHYLDASVITNGLSRAFSTGAWSHPFRKMERVSGVVANLGRANPLQTLI 488
Query: 435 HLRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSP 494
LRR + GK+ R H + WG +C TP+G GLVKN++L+ +S S S
Sbjct: 489 DLRRTRQQVLYTGKVGDARYPHPSHWGRVCFLSTPDGENCGLVKNMSLLGLVSTQSLES- 547
Query: 495 ILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSE 554
++E L ME L + + + K+ +NG WVG+ D E + L+ RRQ ++ E
Sbjct: 548 VVEKLFACGMEELMDDTCTPLFGKHKVLLNGDWVGLCADSESFVAELKSRRRQSEL-PRE 606
Query: 555 VSXXXXXXXXXXXXHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQSG 614
+ TDAGR+ RPLL+ EN L+K LK+ + Y + L+ G
Sbjct: 607 MEIKRDKDDNEVRIFTDAGRLLRPLLVVEN----LQK-----LKQEKPSQYPFDHLLDHG 657
Query: 615 VVEYIDTLEEETTMIAMWQV 634
++E I EEE A W +
Sbjct: 658 ILELIGIEEEEDCNTA-WGI 676
Score = 50 (22.7 bits), Expect = 2.9e-54, Sum P(2) = 2.9e-54
Identities = 18/60 (30%), Positives = 31/60 (51%)
Query: 591 KRHIDNLKERDYNNYGWQVLVQSGVVEYIDTLEEETTMIAMWQVLVQSGVVEYIDTLEEE 650
KR D+ + R + + G ++L VVE + L++E + L+ G++E I EEE
Sbjct: 610 KRDKDDNEVRIFTDAG-RLLRPLLVVENLQKLKQEKPSQYPFDHLLDHGILELIGIEEEE 668
>POMBASE|SPAC4G9.08c [details] [associations]
symbol:rpc2 "DNA-directed RNA polymerase III complex
subunit Rpc2" species:4896 "Schizosaccharomyces pombe" [GO:0003677
"DNA binding" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0005666 "DNA-directed RNA
polymerase III complex" evidence=NAS] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006383 "transcription from RNA polymerase III
promoter" evidence=NAS] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PomBase:SPAC4G9.08c PANTHER:PTHR20856 GO:GO:0005829 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0046872 GO:GO:0003677 GO:GO:0006383
GO:GO:0005666 GO:GO:0003899 eggNOG:COG0085 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 HOGENOM:HOG000222962
KO:K03021 OMA:DMIMNPH EMBL:DQ156226 PIR:T38867 RefSeq:NP_593690.1
ProteinModelPortal:Q10233 DIP:DIP-29536N STRING:Q10233
EnsemblFungi:SPAC4G9.08c.1 GeneID:2543393 KEGG:spo:SPAC4G9.08c
OrthoDB:EOG4K6KC8 NextBio:20804408 Uniprot:Q10233
Length = 1165
Score = 439 (159.6 bits), Expect = 1.1e-39, Sum P(2) = 1.1e-39
Identities = 128/401 (31%), Positives = 211/401 (52%)
Query: 7 WIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPRYLL 66
W ++ A+ KGLV+Q LDS++ F+ + +++IV QA + TS +VE P + L
Sbjct: 51 WQLLPAFLKVKGLVKQHLDSYNYFVDVDLKKIV--------QANEKVTS-DVE--PWFYL 99
Query: 67 KFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQK 126
K+ I + P + D + + P+E RLR+LTY A +YVDI T +G++ V ++
Sbjct: 100 KYLDIRVGAPVRTDADAIQASISPHECRLRDLTYGANIYVDIEYT---RGKQVVRRRNVP 156
Query: 127 SFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVY 186
IG++P+MLRS C+L+G + ++ LNECPLDPGGYFI+ G+EKV++ QE+++ N +
Sbjct: 157 --IGRMPVMLRSNKCVLSGKNEMEMAALNECPLDPGGYFIVKGTEKVILVQEQLSKNRII 214
Query: 187 VFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQE 246
V + K ++ + S T + N G LK +++ +
Sbjct: 215 V-EAEPKKGLWQASVTSSTHERKSKTYVITKN----GKLYLKHNSVAD-----------D 258
Query: 247 IPIMIVFRALGFVADRDILEHII-----Y-DFDDPEMMEMVKPSLDEAFVIQEQNVALNF 300
IPI++V +A+G +D++I E + Y D P + E K ++ + Q+ AL +
Sbjct: 259 IPIVVVLKAMGLQSDQEIFELVAGAEASYQDLFAPSIEECAKLNI---YTAQQ---ALEY 312
Query: 301 IGAR---GARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASL 357
IGAR R G + + A E+L +L H+ V + KA ++G M R+L+A +
Sbjct: 313 IGARVKVNRRAGANRLPPHEEALEVLAAVVLAHINVFNLEFRPKAVYIGIMARRVLMAMV 372
Query: 358 GRRELDDRDHYV---------RMYAQKFIDRGKDFNLELAI 389
++DDRD YV ++ A F D K FN +L +
Sbjct: 373 DPLQVDDRD-YVGNKRLELAGQLLALLFEDLFKKFNSDLKL 412
Score = 406 (148.0 bits), Expect = 1.3e-34, P = 1.3e-34
Identities = 102/320 (31%), Positives = 174/320 (54%)
Query: 319 AREILQKEMLP-HVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYVRMYAQKFI 377
AR +L + P V D+ K+ G ++ LL L ++ D + +K
Sbjct: 364 ARRVLMAMVDPLQVDDRDYVGNKRLELAGQLL-ALLFEDLFKKFNSDLKLNIDKVLKK-P 421
Query: 378 DRGKDFNL--ELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSH 435
R ++F+ +L + + IT G+ +L+TGNW K+ RAGV+ VL+RL++ S+L
Sbjct: 422 HRTQEFDAYNQLTVHSDHITQGMVRALSTGNWS-LKRFKMERAGVTHVLSRLSYISALGM 480
Query: 436 LRRVNSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPI 495
+ R+ S + K++ PR L + +GM+C ++TPEG A GLVKNLALM +I+ + PI
Sbjct: 481 MTRITSQFEKTRKVSGPRSLQASQFGMLCTSDTPEGEACGLVKNLALMTHITTDEEEEPI 540
Query: 496 LEFLEEWSMENLEEIAPSAI-ADATK-IFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVS 553
++ + +E++ I+ + + T +++NG +GI R P + + RKLRR I
Sbjct: 541 IKLAYAFGIEDIHVISGRELHSHGTYLVYLNGAILGISRYPSLFVASFRKLRRSGKISPF 600
Query: 554 EVSXXXXXXXXXXXXHTDAGRICRPLLIAENGSLLLKKRHIDNLKERDYNNYGWQVLVQS 613
+ TD GRICRPL+I +NG ++ +HI LKE +G++ ++
Sbjct: 601 -IGIFINTHQRAVFISTDGGRICRPLIIVQNGLPKVESKHIRLLKE---GKWGFEDFLKQ 656
Query: 614 GVVEYIDTLEEETTMIAMWQ 633
G+VEY+D EE ++I++++
Sbjct: 657 GLVEYVDVNEENDSLISVYE 676
Score = 56 (24.8 bits), Expect = 1.1e-39, Sum P(2) = 1.1e-39
Identities = 13/53 (24%), Positives = 30/53 (56%)
Query: 609 VLVQSGVVEYIDTLEEETTMIAMW--QVLVQSGVVEYIDTLEEETTMIAMSPR 659
++VQ+G+ + +++ W + ++ G+VEY+D EE ++I++ R
Sbjct: 626 IIVQNGLPK-VESKHIRLLKEGKWGFEDFLKQGLVEYVDVNEENDSLISVYER 677
>UNIPROTKB|C9JZW8 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase II subunit RPB2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA]
InterPro:IPR007644 InterPro:IPR015712 Pfam:PF04563
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
EMBL:AC069307 GO:GO:0032549 HGNC:HGNC:9188 IPI:IPI00894524
ProteinModelPortal:C9JZW8 SMR:C9JZW8 STRING:C9JZW8
Ensembl:ENST00000433463 ArrayExpress:C9JZW8 Bgee:C9JZW8
Uniprot:C9JZW8
Length = 76
Score = 286 (105.7 bits), Expect = 2.8e-24, P = 2.8e-24
Identities = 55/63 (87%), Positives = 58/63 (92%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
LWQEACWIVI++YFDEKGLVRQQLDSFDEFIQMSVQRIVED+P IDLQAEAQH S EVE
Sbjct: 14 LWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAPPIDLQAEAQHASGEVEE 73
Query: 61 PPR 63
P R
Sbjct: 74 PVR 76
>DICTYBASE|DDB_G0293560 [details] [associations]
symbol:rpa2 "RNA polymerase I, second largest
subunit" species:44689 "Dictyostelium discoideum" [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006360 "transcription from RNA polymerase I promoter"
evidence=ISS] [GO:0005736 "DNA-directed RNA polymerase I complex"
evidence=ISS] [GO:0005730 "nucleolus" evidence=IEA;ISS] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR009674 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF06883 PROSITE:PS01166 dictyBase:DDB_G0293560
PANTHER:PTHR20856 GenomeReviews:CM000155_GR GO:GO:0046872
GO:GO:0003677 EMBL:AAFI02000218 GO:GO:0006360 GO:GO:0005736
GO:GO:0003899 RefSeq:XP_629008.1 HSSP:P08518 STRING:Q54BM1
PRIDE:Q54BM1 EnsemblProtists:DDB0216278 GeneID:8629292
KEGG:ddi:DDB_G0293560 eggNOG:COG0085 KO:K03002 OMA:EVFAGVT
ProtClustDB:CLSZ2728683 GO:GO:0032549 Gene3D:2.40.270.10
Uniprot:Q54BM1
Length = 1130
Score = 226 (84.6 bits), Expect = 9.0e-23, Sum P(2) = 9.0e-23
Identities = 90/312 (28%), Positives = 152/312 (48%)
Query: 17 KGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPRYLLKFEQIYLSKP 76
K L++ +DSFD F + +++DS + + H ST+ Y ++F + LS+P
Sbjct: 6 KSLIQPHIDSFDFFTDHGIDLVLKDSEPLYFE----HNSTQ------YKIRFTDLKLSRP 55
Query: 77 TH--WEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEE-----PVTTQHQK--- 126
T EK+ + PNE+R TY+AP I V + +E V Q+
Sbjct: 56 TRNIVEKE---IKLYPNESRETGTTYNAPFKGAIGLYEVNEMDEMDDGTEVDYNKQEPTH 112
Query: 127 SF---IGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKV--LIAQEKMA 181
+F +G++PIM++S YC LNG++ L E E L+ GGYFI+NG+EKV ++ K A
Sbjct: 113 TFEVDLGRLPIMVKSRYCHLNGMSPEKLIESREEELEQGGYFIVNGNEKVVRMLVMTK-A 171
Query: 182 TNTVYV----FSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRII 237
+ V + ++ + Y C+ RP + N +L GQ +
Sbjct: 172 NHPVALHRKAWTNRGPGYTKNGITIRCV----RPDRSSITN-------NLHYINDGQTTL 220
Query: 238 AILPYIKQE--IPIMIVFRALGFVADRDILEHIIY-DFDDPEMMEMVKPSLDEAFV--IQ 292
L Y +QE +P ++ +AL +++I E+I+ D ++ + + V+ SL E + I
Sbjct: 221 RFL-YRRQEFFLPATLLLKALKDTTEKEIYENIVQGDNENTFLTDRVELSLREQKINNIN 279
Query: 293 EQNVALNFIGAR 304
Q L++IG+R
Sbjct: 280 TQEEVLDYIGSR 291
Score = 126 (49.4 bits), Expect = 9.0e-23, Sum P(2) = 9.0e-23
Identities = 31/106 (29%), Positives = 48/106 (45%)
Query: 394 ITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASSLSHLRRVN-SPIGRDGKLAK 451
I D Y LATGN Q +G + ++L F +SH R ++ K
Sbjct: 412 IADRFSYFLATGNLRSSSGIDLQQTSGFCVIADKLNFLRFISHFRSIHRGAFFATMKTTA 471
Query: 452 PRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILE 497
R+L WG CP TP+GA GL+ +L+ ++V + P ++
Sbjct: 472 IRKLMPESWGFFCPVHTPDGAPCGLLNHLSSNCLVTVDAAQDPTVQ 517
Score = 46 (21.3 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 288 AFVIQEQNVALNFIGARGARPGVTK 312
AF E N A++F G + A+ G +
Sbjct: 949 AFQFDENNTAIDFFGEQLAKAGFNR 973
Score = 41 (19.5 bits), Expect = 6.4e-14, Sum P(2) = 6.4e-14
Identities = 21/71 (29%), Positives = 32/71 (45%)
Query: 292 QEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHR 351
+E L ++ + G P + K I YA E + G+S F T A F+ +V+
Sbjct: 564 EEMVKMLRYLRSMGNEPSIPKTMEISYAPPT-NVENGQYSGISLF--TTGARFMRPVVN- 619
Query: 352 LLLASLGRREL 362
L S G+ EL
Sbjct: 620 --LTS-GQNEL 627
>ASPGD|ASPL0000012082 [details] [associations]
symbol:AN3933 species:162425 "Emericella nidulans"
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR009674 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF06883 PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 EMBL:BN001302 EMBL:AACD01000064
GO:GO:0003899 eggNOG:COG0085 KO:K03002 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 HOGENOM:HOG000222963
OrthoDB:EOG4W11N4 OMA:FNLLIFM RefSeq:XP_661537.1 STRING:Q5B697
EnsemblFungi:CADANIAT00004761 GeneID:2873357 KEGG:ani:AN3933.2
Uniprot:Q5B697
Length = 1231
Score = 185 (70.2 bits), Expect = 2.8e-17, Sum P(2) = 2.8e-17
Identities = 100/380 (26%), Positives = 173/380 (45%)
Query: 11 NAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPRYLL--KF 68
NA F++ G++ L D + + +VE + Q + Q + P R L +
Sbjct: 48 NALFEKGGIIEAGLK--DIGTRTFLDEVVETAEQ-----KQQRLAEGRRAPRRNKLHVRI 100
Query: 69 EQIYLSKPTH--WEKDGSPSP-MMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQ 125
++++L KPT K + + + P+E R R+ TY L I V G+ T Q +
Sbjct: 101 KEVFLEKPTIPLTNKYTARNRNIYPSECRERHATYRGKLRAKIEYRV-NNGDW--TEQVR 157
Query: 126 KSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKV---LIAQEKMAT 182
+ +G++PIMLR+ C L T +L + E + GGYFI+NG+EK+ LI +
Sbjct: 158 E--LGQVPIMLRTNRCYLEKATPAELVQHKEESEELGGYFIVNGNEKLIRMLIVGRRNYP 215
Query: 183 NTVYVFSMKDSKYAY-KTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILP 241
+ + + +AY K I+ S RP T N++ L + R
Sbjct: 216 MAIVRNTFTNRGHAYSKFGIQI---RSVRPDQTSQTNVL----HYLNDGNVTFRF----S 264
Query: 242 YIKQE--IPIMIVFRALGFVADRDILEHIIYD-----FDDPEMMEMVKPSLD--EAFVIQ 292
+ K E IP++++ +AL DR+I E I+ ++ + + V+ L +A+ +
Sbjct: 265 WRKNEYIIPVVMILKALVETNDREIFEGIVGSASSEGINNTFVTDRVELLLRTYKAYKLH 324
Query: 293 EQNVALNFIGARGARP--GVTKERRIKYA-REILQKEMLPHVGVSDFCETK---KAYFLG 346
++ FIG + +P GV + + A E L+K +LPH+G + ET+ K L
Sbjct: 325 SRSECRAFIGEK-FKPVLGVPADTPNEEAGTEFLRKVVLPHLGNQNVTETQDYDKFKMLM 383
Query: 347 YMVHRLLLASLGRRELDDRD 366
+M+ +L G D+ D
Sbjct: 384 FMIRKLYALVAGDCAPDNPD 403
Score = 117 (46.2 bits), Expect = 2.8e-17, Sum P(2) = 2.8e-17
Identities = 43/187 (22%), Positives = 86/187 (45%)
Query: 365 RDHYVRMYAQKFIDRG--KDFNLELAIKT-KIITDGLRYSLATGNWGDQKKAH-QARAGV 420
RD R + +F D +DF ++ ++ + I + Y L+TGN Q +G
Sbjct: 437 RDWSNRNHGARFTDPAFERDFVSKVIRRSNENIGGAMEYFLSTGNLVSPTGLDLQQTSGY 496
Query: 421 SQVLNRLTFASSLSHLRRVN-SPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKN 479
+ + ++ F +SH R ++ K R+L WG +CP TP+G+ GL+ +
Sbjct: 497 TVMAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNH 556
Query: 480 LALMAYISVG-SQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQ-- 536
LA ++ + S + + L + + N ++ + ++ + ++G +G + P+Q
Sbjct: 557 LAHKCLVATSDTDVSHLPKLLVQLGVRNESSVS---LDESVTVQLDGRIIG-YCSPKQAR 612
Query: 537 -LMGTLR 542
+ TLR
Sbjct: 613 VIASTLR 619
>WB|WBGene00008781 [details] [associations]
symbol:rpoa-2 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0043652 "engulfment of apoptotic cell" evidence=IMP]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007647 InterPro:IPR009674 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04567 Pfam:PF06883 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0005634 GO:GO:0009792 GO:GO:0040007 GO:GO:0002119
GO:GO:0003677 GO:GO:0006351 GO:GO:0040035 GO:GO:0043652
GO:GO:0003899 HSSP:P08518 eggNOG:COG0085 KO:K03002 OMA:EVFAGVT
GO:GO:0032549 Gene3D:2.40.270.10 GeneTree:ENSGT00550000074993
HOGENOM:HOG000222963 EMBL:Z75535 PIR:T20870 RefSeq:NP_492476.1
ProteinModelPortal:Q27493 SMR:Q27493 STRING:Q27493 PaxDb:Q27493
EnsemblMetazoa:F14B4.3 GeneID:172752 KEGG:cel:CELE_F14B4.3
UCSC:F14B4.3 CTD:172752 WormBase:F14B4.3 InParanoid:Q27493
NextBio:876871 Uniprot:Q27493
Length = 1127
Score = 175 (66.7 bits), Expect = 3.1e-17, Sum P(3) = 3.1e-17
Identities = 88/304 (28%), Positives = 139/304 (45%)
Query: 66 LKFEQIYLSKPT--HWEKDGSPS-PMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTT 122
+KF L KPT K S + P++P E R R LTY+ L V I V + +
Sbjct: 43 MKFTSAQLHKPTLDTGAKLTSDTLPLLPAECRQRGLTYAGNLKVGIDVHVNGSRLDII-- 100
Query: 123 QHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKV---LIAQEK 179
+ +GK+PIMLRS C L G++ ++L E P++ GGYFI+NGSEKV LIA +
Sbjct: 101 ---EIILGKVPIMLRSEGCHLRGMSRKELVVAGEEPIEKGGYFIVNGSEKVIRLLIANRR 157
Query: 180 MATNTVY--VFSMKDSKYA-YKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRI 236
+ F K ++ + +RS E+ + TL + + G L +
Sbjct: 158 NFPIAIIRKTFKEKGKLFSEFGVMMRSVKENHTAVMMTL--HYLDTGTMQLALQFRREIF 215
Query: 237 IAILPYIKQEIPIM--IVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQEQ 294
L YI + + V A GF R+ + F ++ M+ +E + QE
Sbjct: 216 YVPLMYIVKALTDKNDAVISA-GFKRGRNQDQ-----FYSSCILNMLAQCQEEEILNQE- 268
Query: 295 NVALNFIGARGARPGVTK-----ERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMV 349
A+ IG+R R V+ E ++ R I+++ +L H+ SD +K + L YM
Sbjct: 269 -AAIRAIGSR-FRVAVSDRVAPWEDDLEAGRFIIRECVLIHLD-SD---EEKFHTLAYMT 322
Query: 350 HRLL 353
+L+
Sbjct: 323 QKLI 326
Score = 133 (51.9 bits), Expect = 3.1e-17, Sum P(3) = 3.1e-17
Identities = 40/140 (28%), Positives = 64/140 (45%)
Query: 394 ITDGLRYSLATGNWGDQKK-AHQARAGVSQVLNRLTFASSLSHLRRVN-SPIGRDGKLAK 451
IT G+ Y LATGN + A Q +G S + R+ +SH R ++ + +
Sbjct: 400 ITRGMAYFLATGNLVTRVGLALQQESGFSVIAERINQLRFVSHFRAIHRGAFFMEMRTTD 459
Query: 452 PRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVG-SQPSPILEFLEEWSMENLEEI 510
R+L WG ICP TP+GA GL+ ++ I S S + L E M + +
Sbjct: 460 VRKLRPEAWGFICPVHTPDGAPCGLLNHVTASCRIVTDLSDNSNVPSLLAELGMYTHKTV 519
Query: 511 APSAIADAT-KIFVNGCWVG 529
A + + + +NG ++G
Sbjct: 520 ALAPPGEELYPVLMNGRFLG 539
Score = 94 (38.1 bits), Expect = 3.0e-13, Sum P(3) = 3.0e-13
Identities = 43/183 (23%), Positives = 73/183 (39%)
Query: 413 AHQARAGVSQVLNRLTFASSLSHLRRVN-SPIGRDGKLAKPRQLHNTLWGMICPAETPEG 471
A Q +G S + R+ +SH R ++ + + R+L WG ICP TP+G
Sbjct: 420 ALQQESGFSVIAERINQLRFVSHFRAIHRGAFFMEMRTTDVRKLRPEAWGFICPVHTPDG 479
Query: 472 AAVGLVKNLALMAYISVG-SQPSPILEFLEEWSMENLEEIAPSAIADAT-KIFVNGCWVG 529
A GL+ ++ I S S + L E M + +A + + + +NG ++G
Sbjct: 480 APCGLLNHVTASCRIVTDLSDNSNVPSLLAELGMYTHKTVALAPPGEELYPVLMNGRFLG 539
Query: 530 IH--RDPEQLMGTLR--KLRRQMDI-IVSEVSXXXXXXXXXXXXH--------TDAGRIC 576
+ LR K+ + I SE++ +DAGR+
Sbjct: 540 YVPITKAASIERYLRCAKVAKDARIPYTSEIALVRRSTDIKNIQTQYPGIYILSDAGRLI 599
Query: 577 RPL 579
RP+
Sbjct: 600 RPV 602
Score = 39 (18.8 bits), Expect = 3.1e-17, Sum P(3) = 3.1e-17
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 573 GRICRPLLIAENGSLLLKKRHIDNLKERDY 602
G + L+ + GS LLKK+ D+ + DY
Sbjct: 1048 GSLLSVLMSSRAGSHLLKKKRKDD-EPLDY 1076
>UNIPROTKB|C9JMN3 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase II subunit RPB2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] InterPro:IPR007644
InterPro:IPR015712 Pfam:PF04563 PANTHER:PTHR20856 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 EMBL:AC069307 GO:GO:0032549
HGNC:HGNC:9188 IPI:IPI00894248 ProteinModelPortal:C9JMN3 SMR:C9JMN3
STRING:C9JMN3 Ensembl:ENST00000450656 ArrayExpress:C9JMN3
Bgee:C9JMN3 Uniprot:C9JMN3
Length = 64
Score = 217 (81.4 bits), Expect = 7.9e-17, P = 7.9e-17
Identities = 40/43 (93%), Positives = 43/43 (100%)
Query: 1 LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSP 43
LWQEACWIVI++YFDEKGLVRQQLDSFDEFIQMSVQRIVED+P
Sbjct: 21 LWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVEDAP 63
>SGD|S000006214 [details] [associations]
symbol:RPA135 "RNA polymerase I second largest subunit A135"
species:4932 "Saccharomyces cerevisiae" [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0042790
"transcription of nuclear large rRNA transcript from RNA polymerase
I promoter" evidence=IGI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005736 "DNA-directed
RNA polymerase I complex" evidence=IDA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA;IDA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007647
InterPro:IPR009674 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04567 Pfam:PF06883 PROSITE:PS01166 SGD:S000006214
PANTHER:PTHR20856 GO:GO:0046872 GO:GO:0003677 EMBL:Z71255
EMBL:U31900 EMBL:BK006949 EMBL:Z49919 GO:GO:0005736 GO:GO:0003899
GO:GO:0042790 eggNOG:COG0085 KO:K03002 GO:GO:0032549
Gene3D:2.40.270.10 GeneTree:ENSGT00550000074993 Gene3D:2.40.50.150
HOGENOM:HOG000222963 OrthoDB:EOG4W11N4 EMBL:M62804 PIR:A39607
RefSeq:NP_015335.1 ProteinModelPortal:P22138 DIP:DIP-135N
IntAct:P22138 MINT:MINT-423299 STRING:P22138 PaxDb:P22138
PeptideAtlas:P22138 EnsemblFungi:YPR010C GeneID:856119
KEGG:sce:YPR010C CYGD:YPR010c OMA:FNLLIFM NextBio:981198
Genevestigator:P22138 GermOnline:YPR010C Uniprot:P22138
Length = 1203
Score = 185 (70.2 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 82/317 (25%), Positives = 145/317 (45%)
Query: 69 EQIYLSKPTHWEKDGSPSPM----MPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQH 124
EQ+ ++KP DG S + P+E+R R +Y L + + K V GEE +
Sbjct: 100 EQVSIAKPM--SNDGVSSAVERKVYPSESRQRLTSYRGKLLLKL-KWSVNNGEENLFEVR 156
Query: 125 QKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKV---LIAQEKMA 181
G +P+ML+S C LN ++ +L + E + GGYFI+NG EK+ LI Q +
Sbjct: 157 D---CGGLPVMLQSNRCHLNKMSPYELVQHKEESDEIGGYFIVNGIEKLIRMLIVQRRNH 213
Query: 182 TNTVY--VFSMKDSKYA-YKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIA 238
+ F+ + + Y+ Y +IRS RP T N++ L + R
Sbjct: 214 PMAIIRPSFANRGASYSHYGIQIRSV-----RPDQTSQTNVL----HYLNDGQVTFRF-- 262
Query: 239 ILPYIKQE--IPIMIVFRALGFVADRDILEHII-YDFDDP---EMMEMVKPSLDEAFV-I 291
+ K E +P++++ +AL +DR+I + II D D + +E++ + + +
Sbjct: 263 --SWRKNEYLVPVVMILKALCHTSDREIFDGIIGNDVKDSFLTDRLELLLRGFKKRYPHL 320
Query: 292 QEQNVALNFIGA--RGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMV 349
Q + L ++G R + ++ +E+L + +L H+G D + K L +M+
Sbjct: 321 QNRTQVLQYLGDKFRVVFQASPDQSDLEVGQEVLDRIVLVHLG-KDGSQDKFRMLL-FMI 378
Query: 350 HRLLLASLGRRELDDRD 366
+L G D+ D
Sbjct: 379 RKLYSLVAGECSPDNPD 395
Score = 111 (44.1 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 29/92 (31%), Positives = 44/92 (47%)
Query: 398 LRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASSLSHLRRVN-SPIGRDGKLAKPRQL 455
++Y L+TGN Q Q +G + V ++ F +SH R V+ K R+L
Sbjct: 461 MQYFLSTGNLVSQSGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAQLKTTTVRKL 520
Query: 456 HNTLWGMICPAETPEGAAVGLVKNLALMAYIS 487
WG +CP TP+G+ GL+ + A IS
Sbjct: 521 LPESWGFLCPVHTPDGSPCGLLNHFAHKCRIS 552
>POMBASE|SPBP23A10.07 [details] [associations]
symbol:rpa2 "DNA-directed RNA polymerase I complex
subunit Rpa2" species:4896 "Schizosaccharomyces pombe" [GO:0003677
"DNA binding" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=ISO] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=ISO] [GO:0006360 "transcription from
RNA polymerase I promoter" evidence=ISO] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007647 InterPro:IPR009674
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04567 Pfam:PF06883
PROSITE:PS01166 PomBase:SPBP23A10.07 PANTHER:PTHR20856
GO:GO:0046872 GO:GO:0003677 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0006360 GO:GO:0005736 GO:GO:0003899 eggNOG:COG0085 KO:K03002
OMA:EVFAGVT GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000222963 PIR:T50394 RefSeq:NP_595819.2 STRING:Q9P7X8
EnsemblFungi:SPBP23A10.07.1 GeneID:2541280 KEGG:spo:SPBP23A10.07
OrthoDB:EOG4W11N4 NextBio:20802391 Uniprot:Q9P7X8
Length = 1174
Score = 175 (66.7 bits), Expect = 3.8e-16, Sum P(2) = 3.8e-16
Identities = 89/369 (24%), Positives = 167/369 (45%)
Query: 15 DEKGLVRQQLDSFDEFIQMSVQR--IVEDSPQIDLQAEAQHTSTEVETPPRYLLKFEQIY 72
D + V+ +DSF+ + + E + + Q ++ + + +++
Sbjct: 24 DLQKAVKPHVDSFNALTNAGLLNYAVKEIGEKCAFDSITQEEGGALKFGNKISFRVDEVQ 83
Query: 73 LSKP--THWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIG 130
++KP + E+ + P EAR R TY + L + + +V G P Q + +G
Sbjct: 84 IAKPMLSSRERSSINRKVYPAEARERLTTYKSRLVLKFSWSV--NGG-P--RQSEMREVG 138
Query: 131 KIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVL--IAQEKMATNTVYV- 187
IPIM+RS C L GL+ +L E + GGYFI+NG EK++ + K T +
Sbjct: 139 MIPIMVRSNRCHLEGLSPAELIAHKEESEEMGGYFIVNGIEKLIRMLILPKRNHPTAIIR 198
Query: 188 --FSMKDSKYA-YKTEIRSCLEHSSRPTSTL-WVNMMARGGQSLKKSAIGQRIIAILPYI 243
F+ + + Y+ Y IR S T+TL ++N G ++ + + Y+
Sbjct: 199 PSFANRGTSYSQYGLSIRCVRPDQSSLTNTLHYLN----NGVTMFRFHWRKN-----EYL 249
Query: 244 KQEIPIMIVFRALGFVADRDILEHII-YDFDDPEMMEMVKPSLD--EAFVIQEQNVALNF 300
IP M++ +AL +D++I E I+ D + + + V+ L +++ + Q L +
Sbjct: 250 ---IPSMMILKALLETSDKEIFEGIVGKDLGNTFLTDRVELMLRAYKSYGLYSQTETLQY 306
Query: 301 IGAR-GARPGVTKERR-IKYAREILQKEMLPHVGVSDFCETKKAY-FLGYMVHRLLLASL 357
+G++ GV ++ ++ R +LQK +L H+ E K + L +M+ +L
Sbjct: 307 LGSKFRVVLGVAEDLTDVEVGRFLLQKVVLVHLR-----EAKDKFRLLLFMIRKLYALVA 361
Query: 358 GRRELDDRD 366
G D+ D
Sbjct: 362 GECCADNPD 370
Score = 116 (45.9 bits), Expect = 3.8e-16, Sum P(2) = 3.8e-16
Identities = 30/86 (34%), Positives = 42/86 (48%)
Query: 398 LRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASSLSHLRRVN-SPIGRDGKLAKPRQL 455
L+Y L+TGN Q G + V +L F LSH R V+ + K R+L
Sbjct: 437 LQYFLSTGNLVSNTGLDLQQATGYTVVAEKLNFYRFLSHFRMVHRGAFFAELKTTTVRKL 496
Query: 456 HNTLWGMICPAETPEGAAVGLVKNLA 481
WG +CP TP+G+ GL+ +LA
Sbjct: 497 LPEAWGFMCPVHTPDGSPCGLLNHLA 522
>CGD|CAL0002109 [details] [associations]
symbol:RPA135 species:5476 "Candida albicans" [GO:0005736
"DNA-directed RNA polymerase I complex" evidence=IEA] [GO:0042790
"transcription of nuclear large rRNA transcript from RNA polymerase
I promoter" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007647 InterPro:IPR009674
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04567 Pfam:PF06883
PROSITE:PS01166 CGD:CAL0002109 PANTHER:PTHR20856 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 EMBL:AACQ01000024 GO:GO:0003899
eggNOG:COG0085 KO:K03002 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 RefSeq:XP_720354.1 RefSeq:XP_888689.1
STRING:Q5AFK6 GeneID:3637996 GeneID:3704205 KEGG:cal:CaO19.7062
KEGG:cal:CaO19_7062 Uniprot:Q5AFK6
Length = 1166
Score = 173 (66.0 bits), Expect = 3.8e-16, Sum P(2) = 3.8e-16
Identities = 74/284 (26%), Positives = 135/284 (47%)
Query: 66 LKFEQIYLSKPTHWEKD--GSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQ 123
++ + + L+KP+ D P+E R R +TY + L +++T +V EE V+
Sbjct: 79 IRVDSVQLAKPSVPANDKLSLNRKTFPSECRERMVTYRSRLMLNVTWSV--NDEEEVSEV 136
Query: 124 HQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKV---LIAQEKM 180
+ G+IPIML+S C L L+ L E E + GGYFI+NG EK+ LI Q +
Sbjct: 137 REA---GQIPIMLKSNRCHLEKLSPNQLVEAKEESDELGGYFIVNGIEKLIRMLIVQRRN 193
Query: 181 ATNTVY--VFSMKDSKYA-YKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRII 237
+ F + + Y + +IRS RP T N++ L + R
Sbjct: 194 HPMAIIRPSFGNRGASYTKFGIQIRSV-----RPDQTSQTNVL----HYLNDGNVTFRF- 243
Query: 238 AILPYIKQE--IPIMIVFRALGFVADRDILEHII-YDFDDPEMMEMVKPSLD--EAFVIQ 292
+ K E +P++++ +AL DR+I + I+ D ++ + + ++ L + + +
Sbjct: 244 ---SWRKNEFLVPVVMILKALIETNDREIFDGIVGNDTENSFLTDRLELLLRTYKTYNLY 300
Query: 293 EQNVALNFIGAR-----GARPGVTKERRIKYAREILQKEMLPHV 331
Q L ++G + GA P ++ I+ +E+L++ +L H+
Sbjct: 301 SQQETLAYLGDKFRVVFGASPDMSD---IEVGKEVLKRIVLVHL 341
Score = 118 (46.6 bits), Expect = 3.8e-16, Sum P(2) = 3.8e-16
Identities = 35/133 (26%), Positives = 64/133 (48%)
Query: 359 RRELDDRDHYVRMYAQKFIDRGKDFNLE-----LAIKTKI---ITDGLRYSLATGNWGDQ 410
+ ++++ +++ Q I+RG N + + ++I I L+Y L+TGN Q
Sbjct: 391 KEKIEEYLQNIKLQIQSDINRGVGINFDDRKYMTRVFSRINENIGQKLQYFLSTGNLVSQ 450
Query: 411 KKAH-QARAGVSQVLNRLTFASSLSHLRRVN-SPIGRDGKLAKPRQLHNTLWGMICPAET 468
Q +G + V ++ F +SH R V+ + K R+L WG +CP T
Sbjct: 451 SGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAELKTTTVRKLLPESWGFLCPVHT 510
Query: 469 PEGAAVGLVKNLA 481
P+G+ GL+ +L+
Sbjct: 511 PDGSPCGLLNHLS 523
>ZFIN|ZDB-GENE-040426-1598 [details] [associations]
symbol:polr1b "polymerase (RNA) I polypeptide B"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR009674 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF06883 PROSITE:PS01166
ZFIN:ZDB-GENE-040426-1598 PANTHER:PTHR20856 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 KO:K03002 GO:GO:0032549
Gene3D:2.40.270.10 CTD:84172 HOVERGEN:HBG017742 Gene3D:2.40.50.150
EMBL:BC097040 IPI:IPI00859868 RefSeq:NP_956812.2 UniGene:Dr.117892
STRING:Q4V967 DNASU:325603 GeneID:325603 KEGG:dre:325603
InParanoid:Q4V967 NextBio:20809377 ArrayExpress:Q4V967
Uniprot:Q4V967
Length = 1132
Score = 161 (61.7 bits), Expect = 8.8e-15, Sum P(2) = 8.8e-15
Identities = 50/158 (31%), Positives = 80/158 (50%)
Query: 19 LVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPRYLLKFEQIYLSKPTH 78
LV+ ++SFD+ + + R+VE P ++ + S L F + + P+
Sbjct: 37 LVKAHIESFDQAVTDGLCRVVEAIPPMEFLYKGDRIS----------LSFVEAIIHTPSV 86
Query: 79 WEKDGSPSPM--MPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIGKIPIML 136
K G + P E R R TY A L D++ +V G V K +G++PIM+
Sbjct: 87 -SKGGISRDLRVFPAECRGRRCTYRAKLVADVSWSV--NG---VPKGIIKQSLGQMPIMV 140
Query: 137 RSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVL 174
+S C L+GL+ ++L E +E + GGYFI+NG EKV+
Sbjct: 141 KSKLCNLHGLSPKELLEHHEEAEEMGGYFIVNGIEKVI 178
Score = 117 (46.2 bits), Expect = 8.8e-15, Sum P(2) = 8.8e-15
Identities = 41/156 (26%), Positives = 65/156 (41%)
Query: 394 ITDGLRYSLATGNWGDQKKAHQAR-AGVSQVLNRLTFASSLSHLRRVNSPIG-RDGKLAK 451
+T Y LATGN + + +G+ V ++L F LSH R V+ +
Sbjct: 424 LTKAFEYLLATGNLMSKTGLGMLQNSGLCVVADKLNFIRYLSHFRCVHRGAAFAKMRTTT 483
Query: 452 PRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEWSMENLEEIA 511
R+L WG +CP TP+G GL+ ++ I P+ L L N +
Sbjct: 484 VRKLLPESWGFLCPVHTPDGEPCGLMNHMTAHCEIVAPVYPTSTLPGLLCSLGVNAADGN 543
Query: 512 PS-AIADATKIFVNGCWVGIHRDPEQLMGTLRKLRR 546
P A +D + ++G +G + E + LRR
Sbjct: 544 PGQAYSDCYPVILDGAMIG-WVEKEVAPSVIESLRR 578
>UNIPROTKB|F1SUA2 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase" species:9823
"Sus scrofa" [GO:0017126 "nucleologenesis" evidence=IEA]
[GO:0009790 "embryo development" evidence=IEA] [GO:0009303 "rRNA
transcription" evidence=IEA] [GO:0007566 "embryo implantation"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005736
"DNA-directed RNA polymerase I complex" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007647 InterPro:IPR009674
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04567 Pfam:PF06883 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0005737 GO:GO:0003677 GO:GO:0009790
GO:GO:0009303 GO:GO:0007566 GO:GO:0005736 GO:GO:0003899 OMA:EVFAGVT
GO:GO:0032549 Gene3D:2.40.270.10 GeneTree:ENSGT00550000074993
GO:GO:0017126 EMBL:CU856034 Ensembl:ENSSSCT00000008871
Uniprot:F1SUA2
Length = 1172
Score = 143 (55.4 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 82/313 (26%), Positives = 133/313 (42%)
Query: 90 PNEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDR 149
P E R R TY L DI+ V G ++ K F+G +PIM++S C L L+ R
Sbjct: 136 PAECRGRRSTYRGRLTADISWAV--NG---ISKGVIKQFLGYVPIMVKSKLCNLYSLSPR 190
Query: 150 DLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYK----TEIRSCL 205
L E +E + GGYFIING EKV+ N + +M K+ + T+
Sbjct: 191 ALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRN--FPIAMVRPKWKSRGPGYTQYVGVS 248
Query: 206 EHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQE--IPIMIVFRALGFVADRD 263
H R + VNM L+ + I Y K+ +P+ +AL +D
Sbjct: 249 MHCVREEHSA-VNMNLH---YLENGTVMLNFI----YRKELFFLPLGFALKALVSFSDYQ 300
Query: 264 ILEHIIYDFDDPEMM-----EMVKPSLDEAFVIQEQNVALNFIGAR-GARPGVTKERRIK 317
I + +I +D + +M++ ++E Q+Q LN++G R + + +
Sbjct: 301 IFQELIKGKEDDSFLRNSVSQMLRIVMEEGCATQKQ--VLNYLGERFRVKVNLPDWYPNE 358
Query: 318 YAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHYVRMYAQKFI 377
A E L E + + + T+K Y L M +L + G ++ D V Q+ +
Sbjct: 359 QAAEFLFNECIC-IHLKS--NTEKFYMLCLMTRKLFALAKGECMEENPDSLVN---QEVL 412
Query: 378 DRGKDFNLELAIK 390
G+ F + L K
Sbjct: 413 TPGQLFLMFLKEK 425
Score = 106 (42.4 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 31/91 (34%), Positives = 45/91 (49%)
Query: 394 ITDGLRYSLATGNWGDQKKAHQAR-AGVSQVLNRLTFASSLSHLRRVNSPIGRD-GKLAK 451
+T Y LATGN + + +G+ V ++L F LSH R V+ G D K+
Sbjct: 463 LTKPFEYLLATGNLRSKTGLGFLQDSGLCVVADKLNFIRYLSHFRCVHR--GADFAKMRT 520
Query: 452 P--RQLHNTLWGMICPAETPEGAAVGLVKNL 480
R+L WG +CP TP+G GL+ +L
Sbjct: 521 TTVRRLLPESWGFLCPVHTPDGEPCGLMNHL 551
>MGI|MGI:108014 [details] [associations]
symbol:Polr1b "polymerase (RNA) I polypeptide B"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005736 "DNA-directed RNA polymerase I complex"
evidence=ISO;IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0007566 "embryo implantation" evidence=IMP]
[GO:0009303 "rRNA transcription" evidence=ISO;IMP] [GO:0009790
"embryo development" evidence=IMP] [GO:0016740 "transferase
activity" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0017126 "nucleologenesis" evidence=IMP]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] Reactome:REACT_78136
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR009674 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF06883 PROSITE:PS01166 MGI:MGI:108014 PANTHER:PTHR20856
GO:GO:0005737 GO:GO:0005654 GO:GO:0046872 GO:GO:0003677
EMBL:CH466519 GO:GO:0009790 GO:GO:0009303 GO:GO:0007566
GO:GO:0005736 GO:GO:0003899 CleanEx:MM_RPA2 Reactome:REACT_86751
eggNOG:COG0085 KO:K03002 OMA:EVFAGVT GO:GO:0032549
Gene3D:2.40.270.10 GeneTree:ENSGT00550000074993 CTD:84172
HOVERGEN:HBG017742 OrthoDB:EOG4H9XJP GO:GO:0017126
Gene3D:2.40.50.150 EMBL:U58280 EMBL:AK143501 EMBL:AK144616
EMBL:AL833780 EMBL:BX000699 IPI:IPI00112769 PIR:T42723
RefSeq:NP_033112.2 UniGene:Mm.259078 ProteinModelPortal:P70700
STRING:P70700 PhosphoSite:P70700 PaxDb:P70700 PRIDE:P70700
Ensembl:ENSMUST00000103205 GeneID:20017 KEGG:mmu:20017
HOGENOM:HOG000222963 InParanoid:Q3UMX7 NextBio:297521 Bgee:P70700
Genevestigator:P70700 GermOnline:ENSMUSG00000027395 Uniprot:P70700
Length = 1135
Score = 128 (50.1 bits), Expect = 4.0e-11, Sum P(2) = 4.0e-11
Identities = 37/85 (43%), Positives = 45/85 (52%)
Query: 90 PNEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDR 149
P E R R TY L DI+ V G V K F+G +PIM++S C L L R
Sbjct: 100 PAECRGRKSTYRGRLTADISWAV--NG---VPKGIIKQFLGYVPIMVKSKLCNLYNLPPR 154
Query: 150 DLTELNECPLDPGGYFIINGSEKVL 174
L E +E + GGYFIING EKV+
Sbjct: 155 VLIEHHEEAEEMGGYFIINGIEKVI 179
Score = 116 (45.9 bits), Expect = 4.0e-11, Sum P(2) = 4.0e-11
Identities = 42/158 (26%), Positives = 72/158 (45%)
Query: 394 ITDGLRYSLATGNWGDQKKAHQAR-AGVSQVLNRLTFASSLSHLRRVNSPIG-RDGKLAK 451
+T Y LATGN + + +G+ V ++L F LSH R V+ +
Sbjct: 426 LTRPFEYLLATGNLRSKTGLGFLQDSGLCVVADKLNFLRYLSHFRCVHRGAAFAKMRTTT 485
Query: 452 PRQLHNTLWGMICPAETPEGAAVGLVKNL-ALMAYISVGSQPSPILEFLEEWSMENLEEI 510
R+L WG +CP TP+GA GL+ +L A+ ++ + I L + ++
Sbjct: 486 VRRLLPESWGFLCPVHTPDGAPCGLLNHLTAVCEVVTKFVYTASIPALLCGLGVTPVDTA 545
Query: 511 APSAIADATKIFVNGCWVG-IHRD--PEQLMGTLRKLR 545
+D + ++G VG + +D PE + TLR+ +
Sbjct: 546 PCRPYSDCYPVLLDGVMVGWVDKDLAPE-VADTLRRFK 582
>RGD|620822 [details] [associations]
symbol:Polr1b "polymerase (RNA) I polypeptide B" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] [GO:0005736 "DNA-directed RNA polymerase
I complex" evidence=IEA;ISO;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0007566 "embryo implantation"
evidence=IEA;ISO] [GO:0009303 "rRNA transcription"
evidence=IEA;ISO;IDA] [GO:0009790 "embryo development"
evidence=IEA;ISO] [GO:0017126 "nucleologenesis" evidence=IEA;ISO]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 PROSITE:PS01166 RGD:620822
PANTHER:PTHR20856 GO:GO:0046872 GO:GO:0003677 GO:GO:0009303
GO:GO:0005736 GO:GO:0003899 eggNOG:COG0085 KO:K03002 GO:GO:0032549
Gene3D:2.40.270.10 CTD:84172 HOVERGEN:HBG017742 Gene3D:2.40.50.150
HOGENOM:HOG000222963 EMBL:AF025424 IPI:IPI00231082 PIR:T42368
RefSeq:NP_113961.1 UniGene:Rn.88734 STRING:O54888
PhosphoSite:O54888 PRIDE:O54888 GeneID:83582 KEGG:rno:83582
UCSC:RGD:620822 InParanoid:O54888 NextBio:616115
ArrayExpress:O54888 Genevestigator:O54888
GermOnline:ENSRNOG00000018349 Uniprot:O54888
Length = 1135
Score = 126 (49.4 bits), Expect = 5.1e-11, Sum P(2) = 5.1e-11
Identities = 36/85 (42%), Positives = 45/85 (52%)
Query: 90 PNEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDR 149
P E R R TY L DI+ V G V K F+G +PIM++S C L L +
Sbjct: 100 PAECRGRRSTYRGKLTADISWAV--NG---VPKGIIKQFLGXVPIMVKSKLCNLYNLPPQ 154
Query: 150 DLTELNECPLDPGGYFIINGSEKVL 174
L E +E + GGYFIING EKV+
Sbjct: 155 VLIEHHEEAEEMGGYFIINGIEKVI 179
Score = 117 (46.2 bits), Expect = 5.1e-11, Sum P(2) = 5.1e-11
Identities = 44/160 (27%), Positives = 74/160 (46%)
Query: 394 ITDGLRYSLATGNWGDQKK-AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRD-GKLAK 451
+T Y LATGN + +G+ V ++L F LSH R V+ G D K+
Sbjct: 426 LTRPFEYLLATGNLRSKTGLGFMQDSGLCVVADKLNFIRYLSHFRCVHR--GADFAKMRT 483
Query: 452 P--RQLHNTLWGMICPAETPEGAAVGLVKNL-ALMAYISVGSQPSPILEFLEEWSMENLE 508
R+L WG +CP TP+GA GL+ +L A+ ++ + I L + ++
Sbjct: 484 TTVRKLLPESWGFLCPVHTPDGAPCGLLNHLTAVCEVVTKFVYTASIPALLCGLGVTPVD 543
Query: 509 EIAPSAIADATKIFVNGCWVG-IHRD--PEQLMGTLRKLR 545
+D + ++G VG + ++ PE + TLR+ +
Sbjct: 544 AAPCRPYSDCYPVLLDGVMVGWVDKELAPE-VADTLRRFK 582
>UNIPROTKB|O54888 [details] [associations]
symbol:Polr1b "DNA-directed RNA polymerase I subunit RPA2"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 PROSITE:PS01166 RGD:620822
PANTHER:PTHR20856 GO:GO:0046872 GO:GO:0003677 GO:GO:0009303
GO:GO:0005736 GO:GO:0003899 eggNOG:COG0085 KO:K03002 GO:GO:0032549
Gene3D:2.40.270.10 CTD:84172 HOVERGEN:HBG017742 Gene3D:2.40.50.150
HOGENOM:HOG000222963 EMBL:AF025424 IPI:IPI00231082 PIR:T42368
RefSeq:NP_113961.1 UniGene:Rn.88734 STRING:O54888
PhosphoSite:O54888 PRIDE:O54888 GeneID:83582 KEGG:rno:83582
UCSC:RGD:620822 InParanoid:O54888 NextBio:616115
ArrayExpress:O54888 Genevestigator:O54888
GermOnline:ENSRNOG00000018349 Uniprot:O54888
Length = 1135
Score = 126 (49.4 bits), Expect = 5.1e-11, Sum P(2) = 5.1e-11
Identities = 36/85 (42%), Positives = 45/85 (52%)
Query: 90 PNEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDR 149
P E R R TY L DI+ V G V K F+G +PIM++S C L L +
Sbjct: 100 PAECRGRRSTYRGKLTADISWAV--NG---VPKGIIKQFLGXVPIMVKSKLCNLYNLPPQ 154
Query: 150 DLTELNECPLDPGGYFIINGSEKVL 174
L E +E + GGYFIING EKV+
Sbjct: 155 VLIEHHEEAEEMGGYFIINGIEKVI 179
Score = 117 (46.2 bits), Expect = 5.1e-11, Sum P(2) = 5.1e-11
Identities = 44/160 (27%), Positives = 74/160 (46%)
Query: 394 ITDGLRYSLATGNWGDQKK-AHQARAGVSQVLNRLTFASSLSHLRRVNSPIGRD-GKLAK 451
+T Y LATGN + +G+ V ++L F LSH R V+ G D K+
Sbjct: 426 LTRPFEYLLATGNLRSKTGLGFMQDSGLCVVADKLNFIRYLSHFRCVHR--GADFAKMRT 483
Query: 452 P--RQLHNTLWGMICPAETPEGAAVGLVKNL-ALMAYISVGSQPSPILEFLEEWSMENLE 508
R+L WG +CP TP+GA GL+ +L A+ ++ + I L + ++
Sbjct: 484 TTVRKLLPESWGFLCPVHTPDGAPCGLLNHLTAVCEVVTKFVYTASIPALLCGLGVTPVD 543
Query: 509 EIAPSAIADATKIFVNGCWVG-IHRD--PEQLMGTLRKLR 545
+D + ++G VG + ++ PE + TLR+ +
Sbjct: 544 AAPCRPYSDCYPVLLDGVMVGWVDKELAPE-VADTLRRFK 582
>UNIPROTKB|E2REX8 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007647 InterPro:IPR009674
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04567 Pfam:PF06883
PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005634 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 KO:K03002 OMA:EVFAGVT GO:GO:0032549
Gene3D:2.40.270.10 GeneTree:ENSGT00550000074993 Gene3D:2.40.50.150
EMBL:AAEX03010908 RefSeq:XP_003639648.1 Ensembl:ENSCAFT00000011494
GeneID:100856298 KEGG:cfa:100856298 Uniprot:E2REX8
Length = 1135
Score = 131 (51.2 bits), Expect = 1.2e-10, Sum P(3) = 1.2e-10
Identities = 36/85 (42%), Positives = 47/85 (55%)
Query: 90 PNEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDR 149
P E R R TY L DI+ V G ++ K F+G IPIM++S C L+ L +
Sbjct: 100 PAECRGRRSTYRGKLTADISWAV--NG---ISKGIIKQFLGYIPIMVKSKLCNLHSLPPK 154
Query: 150 DLTELNECPLDPGGYFIINGSEKVL 174
L E +E + GGYFIING EKV+
Sbjct: 155 ALIEHHEEVEEMGGYFIINGIEKVI 179
Score = 107 (42.7 bits), Expect = 1.2e-10, Sum P(3) = 1.2e-10
Identities = 31/97 (31%), Positives = 47/97 (48%)
Query: 394 ITDGLRYSLATGNWGDQKKAHQAR-AGVSQVLNRLTFASSLSHLRRVNSPIGRD-GKLAK 451
+T Y LATGN + + +G+ V ++L F LSH R V+ G D K+
Sbjct: 426 LTKPFEYLLATGNLRSKTGLGFLQDSGLCVVADKLNFIRYLSHFRCVHR--GADFAKMRT 483
Query: 452 P--RQLHNTLWGMICPAETPEGAAVGLVKNLALMAYI 486
R+L WG +CP TP+G GL+ +L + +
Sbjct: 484 TTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEV 520
Score = 47 (21.6 bits), Expect = 1.2e-10, Sum P(3) = 1.2e-10
Identities = 32/150 (21%), Positives = 63/150 (42%)
Query: 247 IPIMIVFRALGFVADRDILEHIIYDFDDPEMM-----EMVKPSLDEAFVIQEQNVALNFI 301
+P+ +AL +D I + +I ++ +M++ ++E Q+Q LN++
Sbjct: 247 LPLGFALKALVSFSDYQIFQELIKGKEEDSFFRNSVSQMLRIVMEEGCSTQKQ--VLNYL 304
Query: 302 GAR-GARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
G R + + + A E L + + + + T+K Y L M +L + G
Sbjct: 305 GERFRVKLSLPDWYPNEQAAEFLFNQCIC-IHLKS--NTEKFYMLCLMTRKLFALAKGEC 361
Query: 361 ELDDRDHYVRMYAQKFIDRGKDFNLELAIK 390
D+ D V Q+ + G+ F + L K
Sbjct: 362 MEDNPDSLVN---QEVLTPGQLFLMFLKEK 388
>TAIR|locus:2019272 [details] [associations]
symbol:NRPA2 "nuclear RNA polymerase A2" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=ISM] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR009674 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF06883 PROSITE:PS01166
PANTHER:PTHR20856 EMBL:CP002684 GO:GO:0005829 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 KO:K03002 OMA:EVFAGVT
GO:GO:0032549 Gene3D:2.40.270.10 IPI:IPI00518589 RefSeq:NP_564341.2
UniGene:At.16301 ProteinModelPortal:F4I366 SMR:F4I366 PRIDE:F4I366
EnsemblPlants:AT1G29940.1 GeneID:839872 KEGG:ath:AT1G29940
Uniprot:F4I366
Length = 1178
Score = 144 (55.7 bits), Expect = 1.4e-10, Sum P(3) = 1.4e-10
Identities = 53/204 (25%), Positives = 93/204 (45%)
Query: 71 IYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIG 130
++ + ++ P++P E R ++Y+ D V + + V + + F G
Sbjct: 68 VFAPQKESFKSTSRKEPLLPFECRQAKISYTGTFMAD----VCFKYNDGVVVRDKFDF-G 122
Query: 131 KIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYV 187
+ PIML S C L G R L + E + GGYFI+NG E+V +IA ++ ++
Sbjct: 123 QFPIMLMSKLCSLKGADCRKLLKCKESTSEMGGYFILNGIERVFRCVIAPKRNHPTSMIR 182
Query: 188 FSMKDSK--YAYKTEIRSCL-EHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIK 244
S +D K Y+ K + C+ + S T L+ R G + +G I+ Y+
Sbjct: 183 NSFRDRKEGYSSKAVVTRCVRDDQSSVTVKLYY---LRNGSA----RVGFWIVG-REYL- 233
Query: 245 QEIPIMIVFRALGFVADRDILEHI 268
+P+ +V +AL D +I E +
Sbjct: 234 --LPVGLVLKALTNSCDEEIYESL 255
Score = 98 (39.6 bits), Expect = 1.4e-10, Sum P(3) = 1.4e-10
Identities = 28/88 (31%), Positives = 40/88 (45%)
Query: 415 QARAGVSQVLNRLTFASSLSHLRRVNSPIGRDG-KLAKPRQLHNTLWGMICPAETPEGAA 473
Q RAG + RL F LS R V+ G + R+L WG +CP TP+G
Sbjct: 450 QQRAGYTVQAERLNFLRFLSFFRAVHRGASFAGLRTTTVRKLLPESWGFLCPVHTPDGTP 509
Query: 474 VGLVKNLALMAYI-SVGSQPSPILEFLE 500
GL+ ++ + I S I +FL+
Sbjct: 510 CGLLNHMTRTSRITSQFDSKGNIRDFLK 537
Score = 42 (19.8 bits), Expect = 1.4e-10, Sum P(3) = 1.4e-10
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 597 LKERDYNNYGWQVL 610
LKE+ +N+YG + L
Sbjct: 993 LKEKGFNHYGTETL 1006
>UNIPROTKB|A6QLS0 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase" species:9913
"Bos taurus" [GO:0017126 "nucleologenesis" evidence=IEA]
[GO:0009790 "embryo development" evidence=IEA] [GO:0009303 "rRNA
transcription" evidence=IEA] [GO:0007566 "embryo implantation"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005736
"DNA-directed RNA polymerase I complex" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007647 InterPro:IPR009674
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04567 Pfam:PF06883
PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005737 GO:GO:0003677
GO:GO:0009790 GO:GO:0009303 GO:GO:0007566 GO:GO:0005736
GO:GO:0003899 eggNOG:COG0085 KO:K03002 OMA:EVFAGVT GO:GO:0032549
Gene3D:2.40.270.10 GeneTree:ENSGT00550000074993 CTD:84172
HOVERGEN:HBG017742 OrthoDB:EOG4H9XJP GO:GO:0017126
Gene3D:2.40.50.150 HOGENOM:HOG000222963 EMBL:DAAA02031075
EMBL:BC148064 IPI:IPI00708666 RefSeq:NP_001093762.1
UniGene:Bt.13051 STRING:A6QLS0 Ensembl:ENSBTAT00000018830
GeneID:282342 KEGG:bta:282342 InParanoid:A6QLS0 NextBio:20806137
Uniprot:A6QLS0
Length = 1135
Score = 129 (50.5 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 35/85 (41%), Positives = 47/85 (55%)
Query: 90 PNEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDR 149
P E R R TY L DI+ +V G ++ K F+G +PIM++S C L L +
Sbjct: 100 PAECRGRRSTYRGKLTADISWSV--NG---ISKGVIKQFLGYVPIMVKSKLCNLYNLPPK 154
Query: 150 DLTELNECPLDPGGYFIINGSEKVL 174
L E +E + GGYFIING EKV+
Sbjct: 155 ALIEHHEEAEEMGGYFIINGIEKVI 179
Score = 109 (43.4 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 41/157 (26%), Positives = 68/157 (43%)
Query: 394 ITDGLRYSLATGNWGDQKKAHQAR-AGVSQVLNRLTFASSLSHLRRVNSPIGRD-GKLAK 451
+T Y LATGN + + +G+ V ++L F LSH R V+ G D K+
Sbjct: 426 LTKPFEYLLATGNLRSKTGLGFLQDSGLCVVADKLNFIRYLSHFRCVHR--GADFAKMRT 483
Query: 452 P--RQLHNTLWGMICPAETPEGAAVGLVKNL-ALMAYISVGSQPSPILEFLEEWSMENLE 508
R+L WG +CP TP+G GL+ +L A+ ++ + I L + ++
Sbjct: 484 TTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAICEVVTQSVYTASIPALLCNLGVTPVD 543
Query: 509 EIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLR 545
++ + ++G +G D E G LR
Sbjct: 544 GTPHRPYSECYPVLLDGVMIG-WADKEIAPGIADSLR 579
>UNIPROTKB|Q9H9Y6 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase I subunit RPA2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=IEA] [GO:0007566 "embryo
implantation" evidence=IEA] [GO:0009303 "rRNA transcription"
evidence=IEA] [GO:0009790 "embryo development" evidence=IEA]
[GO:0017126 "nucleologenesis" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006360 "transcription from RNA polymerase I promoter"
evidence=TAS] [GO:0006361 "transcription initiation from RNA
polymerase I promoter" evidence=TAS] [GO:0006362 "transcription
elongation from RNA polymerase I promoter" evidence=TAS]
[GO:0006363 "termination of RNA polymerase I transcription"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] Reactome:REACT_71 InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007647
InterPro:IPR009674 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04567 Pfam:PF06883 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0046872
GO:GO:0003677 GO:GO:0009790 GO:GO:0009303 GO:GO:0007566
Reactome:REACT_1788 GO:GO:0006363 GO:GO:0006362 GO:GO:0006361
EMBL:AC012442 GO:GO:0005736 GO:GO:0003899 eggNOG:COG0085 KO:K03002
GO:GO:0032549 Gene3D:2.40.270.10 EMBL:AK022533 EMBL:AK022890
EMBL:AK128044 IPI:IPI00026445 IPI:IPI01010348 RefSeq:NP_001131076.1
RefSeq:NP_061887.2 UniGene:Hs.741552 ProteinModelPortal:Q9H9Y6
SMR:Q9H9Y6 DIP:DIP-27538N IntAct:Q9H9Y6 MINT:MINT-4727878
STRING:Q9H9Y6 PhosphoSite:Q9H9Y6 DMDM:92090637 SWISS-2DPAGE:Q9H9Y6
PaxDb:Q9H9Y6 PRIDE:Q9H9Y6 Ensembl:ENST00000263331
Ensembl:ENST00000417433 GeneID:84172 KEGG:hsa:84172 UCSC:uc002thw.2
UCSC:uc010fkn.2 CTD:84172 GeneCards:GC02P113299 H-InvDB:HIX0002380
HGNC:HGNC:20454 HPA:HPA037528 MIM:602000 neXtProt:NX_Q9H9Y6
PharmGKB:PA130601182 HOVERGEN:HBG017742 InParanoid:Q9H9Y6
OrthoDB:EOG4H9XJP PhylomeDB:Q9H9Y6 GenomeRNAi:84172 NextBio:73536
ArrayExpress:Q9H9Y6 Bgee:Q9H9Y6 CleanEx:HS_POLR1B
Genevestigator:Q9H9Y6 GermOnline:ENSG00000125630 GO:GO:0017126
Gene3D:2.40.50.150 Uniprot:Q9H9Y6
Length = 1135
Score = 128 (50.1 bits), Expect = 3.1e-10, Sum P(3) = 3.1e-10
Identities = 35/85 (41%), Positives = 45/85 (52%)
Query: 90 PNEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDR 149
P E R R TY L DI V G ++ K F+G +PIM++S C L L +
Sbjct: 100 PAECRGRRSTYRGKLTADINWAV--NG---ISKGIIKQFLGYVPIMVKSKLCNLRNLPPQ 154
Query: 150 DLTELNECPLDPGGYFIINGSEKVL 174
L E +E + GGYFIING EKV+
Sbjct: 155 ALIEHHEEAEEMGGYFIINGIEKVI 179
Score = 104 (41.7 bits), Expect = 3.1e-10, Sum P(3) = 3.1e-10
Identities = 30/97 (30%), Positives = 46/97 (47%)
Query: 394 ITDGLRYSLATGNWGDQKKAHQAR-AGVSQVLNRLTFASSLSHLRRVNSPIGRD-GKLAK 451
+T Y ATGN + + +G+ V ++L F LSH R V+ G D K+
Sbjct: 426 LTKPFEYLFATGNLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHR--GADFAKMRT 483
Query: 452 P--RQLHNTLWGMICPAETPEGAAVGLVKNLALMAYI 486
R+L WG +CP TP+G GL+ +L + +
Sbjct: 484 TTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEV 520
Score = 49 (22.3 bits), Expect = 3.1e-10, Sum P(3) = 3.1e-10
Identities = 33/150 (22%), Positives = 63/150 (42%)
Query: 247 IPIMIVFRALGFVADRDILEHIIYDFDDPEMM-----EMVKPSLDEAFVIQEQNVALNFI 301
+P+ +AL +D I + +I +D + +M++ ++E Q+Q LN++
Sbjct: 247 LPLGFALKALVSFSDYQIFQELIKGKEDDSFLRNSVSQMLRIVMEEGCSTQKQ--VLNYL 304
Query: 302 G-ARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
G + V + A E L + + + + T+K Y L M +L + G
Sbjct: 305 GECFRVKLNVPDWYPNEQAAEFLFNQCIC-IHLKS--NTEKFYMLCLMTRKLFALAKGEC 361
Query: 361 ELDDRDHYVRMYAQKFIDRGKDFNLELAIK 390
D+ D V Q+ + G+ F + L K
Sbjct: 362 MEDNPDSLVN---QEVLTPGQLFLMFLKEK 388
>UNIPROTKB|F5GZX4 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007647 InterPro:IPR009674 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04567 Pfam:PF06883 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0005737 GO:GO:0005730 GO:GO:0003677
GO:GO:0006351 EMBL:AC012442 GO:GO:0003899 OMA:EVFAGVT GO:GO:0032549
Gene3D:2.40.270.10 HGNC:HGNC:20454 Gene3D:2.40.50.150
IPI:IPI00418797 Ensembl:ENST00000541869 ArrayExpress:F5GZX4
Bgee:F5GZX4 Uniprot:F5GZX4
Length = 1173
Score = 128 (50.1 bits), Expect = 3.4e-10, Sum P(3) = 3.4e-10
Identities = 35/85 (41%), Positives = 45/85 (52%)
Query: 90 PNEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDR 149
P E R R TY L DI V G ++ K F+G +PIM++S C L L +
Sbjct: 138 PAECRGRRSTYRGKLTADINWAV--NG---ISKGIIKQFLGYVPIMVKSKLCNLRNLPPQ 192
Query: 150 DLTELNECPLDPGGYFIINGSEKVL 174
L E +E + GGYFIING EKV+
Sbjct: 193 ALIEHHEEAEEMGGYFIINGIEKVI 217
Score = 104 (41.7 bits), Expect = 3.4e-10, Sum P(3) = 3.4e-10
Identities = 30/97 (30%), Positives = 46/97 (47%)
Query: 394 ITDGLRYSLATGNWGDQKKAHQAR-AGVSQVLNRLTFASSLSHLRRVNSPIGRD-GKLAK 451
+T Y ATGN + + +G+ V ++L F LSH R V+ G D K+
Sbjct: 464 LTKPFEYLFATGNLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHR--GADFAKMRT 521
Query: 452 P--RQLHNTLWGMICPAETPEGAAVGLVKNLALMAYI 486
R+L WG +CP TP+G GL+ +L + +
Sbjct: 522 TTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEV 558
Score = 49 (22.3 bits), Expect = 3.4e-10, Sum P(3) = 3.4e-10
Identities = 33/150 (22%), Positives = 63/150 (42%)
Query: 247 IPIMIVFRALGFVADRDILEHIIYDFDDPEMM-----EMVKPSLDEAFVIQEQNVALNFI 301
+P+ +AL +D I + +I +D + +M++ ++E Q+Q LN++
Sbjct: 285 LPLGFALKALVSFSDYQIFQELIKGKEDDSFLRNSVSQMLRIVMEEGCSTQKQ--VLNYL 342
Query: 302 G-ARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
G + V + A E L + + + + T+K Y L M +L + G
Sbjct: 343 GECFRVKLNVPDWYPNEQAAEFLFNQCIC-IHLKS--NTEKFYMLCLMTRKLFALAKGEC 399
Query: 361 ELDDRDHYVRMYAQKFIDRGKDFNLELAIK 390
D+ D V Q+ + G+ F + L K
Sbjct: 400 MEDNPDSLVN---QEVLTPGQLFLMFLKEK 426
>UNIPROTKB|F1NRJ5 [details] [associations]
symbol:F1NRJ5 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR009674 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF06883
PANTHER:PTHR20856 GO:GO:0005634 GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10
GeneTree:ENSGT00550000074993 EMBL:AADN02041199 IPI:IPI00820874
Ensembl:ENSGALT00000039028 Uniprot:F1NRJ5
Length = 760
Score = 123 (48.4 bits), Expect = 5.6e-10, Sum P(2) = 5.6e-10
Identities = 39/163 (23%), Positives = 73/163 (44%)
Query: 391 TKIITDGLRYSLATGNWGDQKKAHQAR-AGVSQVLNRLTFASSLSHLRRVNSPIG-RDGK 448
T +T Y LATGN + + +G+ V ++L F LSH R ++ +
Sbjct: 311 TTDVTKSFEYLLATGNLRSKTGLGMLQDSGLCVVGDKLNFVRYLSHFRCIHRGSAFAQMR 370
Query: 449 LAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQP-SPILEFLEEWSMENL 507
R+L WG +CP +TP+G GL+ ++ + I P + + L + +
Sbjct: 371 TTTVRKLLPESWGFLCPVDTPDGEPCGLMNHMTAVCEIVTEMVPVTDLPPLLCALGVVPI 430
Query: 508 EEIAPSAIADATKIFVNGCWVG-IHRD-PEQLMGTLRKLRRQM 548
+ A+ ++ ++G VG + D Q+ LR+ ++Q+
Sbjct: 431 DATPSRPYAECYRVLLDGAVVGWVEWDLAPQVAEALRRFKKQI 473
Score = 106 (42.4 bits), Expect = 5.6e-10, Sum P(2) = 5.6e-10
Identities = 29/71 (40%), Positives = 44/71 (61%)
Query: 106 VDITKTV--VRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGG 163
VDI+ +V + QG T +H +G +PIM++S C L L+ ++L + +E + GG
Sbjct: 4 VDISWSVNDIPQG----TIKHP---VGFVPIMVKSKLCNLYNLSPQELIQHHEEEEEMGG 56
Query: 164 YFIINGSEKVL 174
YFIING EKV+
Sbjct: 57 YFIINGLEKVI 67
>GENEDB_PFALCIPARUM|PF11_0358 [details] [associations]
symbol:PF11_0358 "DNA-directed RNA polymerase,
beta subunit, putative" species:5833 "Plasmodium falciparum"
[GO:0005736 "DNA-directed RNA polymerase I complex" evidence=ISS]
[GO:0006360 "transcription from RNA polymerase I promoter"
evidence=ISS] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04563
Pfam:PF04565 PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0003677
EMBL:AE014186 GO:GO:0006360 GO:GO:0005736 GO:GO:0003899 KO:K03002
GO:GO:0032549 Gene3D:2.40.270.10 RefSeq:XP_001348029.1
ProteinModelPortal:Q8II17 EnsemblProtists:PF11_0358:mRNA
GeneID:810905 KEGG:pfa:PF11_0358 EuPathDB:PlasmoDB:PF3D7_1134700
HOGENOM:HOG000282443 OMA:ENINIDM ProtClustDB:CLSZ2433354
Uniprot:Q8II17
Length = 1517
Score = 127 (49.8 bits), Expect = 1.0e-09, Sum P(3) = 1.0e-09
Identities = 43/171 (25%), Positives = 76/171 (44%)
Query: 9 VINAYFD--EKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTST-EVETPPRYL 65
+IN ++ K LV+ +D F+ FI + ++ I E+ P ++ + + S +
Sbjct: 59 LINGSYNIFTKFLVQSHIDDFNSFINVYIKNIAENIPIMEFSPQQNNYSLLNMNKNNSES 118
Query: 66 LKF--EQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQ 123
+KF I + P G P +L TY L + I RQ ++ + +
Sbjct: 119 VKFFVSDIQIKNPMIKNDKGEYRADYPYLCKLSARTYEGELLIKIN----RQYKDEIAST 174
Query: 124 HQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVL 174
G IPIM+ S C L+ L ++L + E GG+F+++G KV+
Sbjct: 175 --TICAGHIPIMIMSNLCNLSNLNKKELAQKGEDQSLLGGFFVVSGRLKVI 223
Score = 112 (44.5 bits), Expect = 1.0e-09, Sum P(3) = 1.0e-09
Identities = 26/95 (27%), Positives = 45/95 (47%)
Query: 395 TDGLRYSLATGNWGDQKKAHQARAG---VSQVLNRLTFASSLSHLRRVNSPIGRDGKLAK 451
+ + + TGN + +Q ++G + +N L ++ + R +D K+
Sbjct: 549 SSAILFFFKTGNISSENLHYQQKSGWVIAADEINNLRLITNFRAIHR--GTFFQDVKVLT 606
Query: 452 PRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYI 486
PR+L WG ICP TP+G GL+ +LA +I
Sbjct: 607 PRKLLGESWGFICPVHTPDGTPCGLLNHLAQYCHI 641
Score = 41 (19.5 bits), Expect = 1.0e-09, Sum P(3) = 1.0e-09
Identities = 15/55 (27%), Positives = 30/55 (54%)
Query: 281 VKPSLDEAFVIQEQNVALNFIGARG-ARPGVTKERRIKY---AREILQKEMLPHV 331
+K + +E + ++ N L+++G R G+ K Y A++IL+ +LPH+
Sbjct: 323 LKDTFNEKELFEKYN--LSYLGRIAYLRRGIFKYNLNCYEKKAKDILKYCILPHI 375
>UNIPROTKB|Q8II17 [details] [associations]
symbol:PF11_0358 "DNA-directed RNA polymerase"
species:36329 "Plasmodium falciparum 3D7" [GO:0005736 "DNA-directed
RNA polymerase I complex" evidence=ISS] [GO:0006360 "transcription
from RNA polymerase I promoter" evidence=ISS] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04563 Pfam:PF04565 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 EMBL:AE014186 GO:GO:0006360 GO:GO:0005736
GO:GO:0003899 KO:K03002 GO:GO:0032549 Gene3D:2.40.270.10
RefSeq:XP_001348029.1 ProteinModelPortal:Q8II17
EnsemblProtists:PF11_0358:mRNA GeneID:810905 KEGG:pfa:PF11_0358
EuPathDB:PlasmoDB:PF3D7_1134700 HOGENOM:HOG000282443 OMA:ENINIDM
ProtClustDB:CLSZ2433354 Uniprot:Q8II17
Length = 1517
Score = 127 (49.8 bits), Expect = 1.0e-09, Sum P(3) = 1.0e-09
Identities = 43/171 (25%), Positives = 76/171 (44%)
Query: 9 VINAYFD--EKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTST-EVETPPRYL 65
+IN ++ K LV+ +D F+ FI + ++ I E+ P ++ + + S +
Sbjct: 59 LINGSYNIFTKFLVQSHIDDFNSFINVYIKNIAENIPIMEFSPQQNNYSLLNMNKNNSES 118
Query: 66 LKF--EQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQ 123
+KF I + P G P +L TY L + I RQ ++ + +
Sbjct: 119 VKFFVSDIQIKNPMIKNDKGEYRADYPYLCKLSARTYEGELLIKIN----RQYKDEIAST 174
Query: 124 HQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVL 174
G IPIM+ S C L+ L ++L + E GG+F+++G KV+
Sbjct: 175 --TICAGHIPIMIMSNLCNLSNLNKKELAQKGEDQSLLGGFFVVSGRLKVI 223
Score = 112 (44.5 bits), Expect = 1.0e-09, Sum P(3) = 1.0e-09
Identities = 26/95 (27%), Positives = 45/95 (47%)
Query: 395 TDGLRYSLATGNWGDQKKAHQARAG---VSQVLNRLTFASSLSHLRRVNSPIGRDGKLAK 451
+ + + TGN + +Q ++G + +N L ++ + R +D K+
Sbjct: 549 SSAILFFFKTGNISSENLHYQQKSGWVIAADEINNLRLITNFRAIHR--GTFFQDVKVLT 606
Query: 452 PRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYI 486
PR+L WG ICP TP+G GL+ +LA +I
Sbjct: 607 PRKLLGESWGFICPVHTPDGTPCGLLNHLAQYCHI 641
Score = 41 (19.5 bits), Expect = 1.0e-09, Sum P(3) = 1.0e-09
Identities = 15/55 (27%), Positives = 30/55 (54%)
Query: 281 VKPSLDEAFVIQEQNVALNFIGARG-ARPGVTKERRIKY---AREILQKEMLPHV 331
+K + +E + ++ N L+++G R G+ K Y A++IL+ +LPH+
Sbjct: 323 LKDTFNEKELFEKYN--LSYLGRIAYLRRGIFKYNLNCYEKKAKDILKYCILPHI 375
>FB|FBgn0003278 [details] [associations]
symbol:RpI135 "RNA polymerase I 135kD subunit" species:7227
"Drosophila melanogaster" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=ISS] [GO:0005736 "DNA-directed RNA polymerase I
complex" evidence=ISS] [GO:0006360 "transcription from RNA
polymerase I promoter" evidence=ISS;NAS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0003677 "DNA binding" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007647 InterPro:IPR009674
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04567 Pfam:PF06883 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0005730 EMBL:AE014134 GO:GO:0022008
GO:GO:0046872 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
eggNOG:COG0085 KO:K03002 OMA:EVFAGVT GO:GO:0032549
Gene3D:2.40.270.10 EMBL:X17298 EMBL:AY075569 PIR:JQ0354
RefSeq:NP_476708.1 UniGene:Dm.30753 ProteinModelPortal:P20028
STRING:P20028 PaxDb:P20028 EnsemblMetazoa:FBtr0078054 GeneID:33210
KEGG:dme:Dmel_CG4033 CTD:33210 FlyBase:FBgn0003278
GeneTree:ENSGT00550000074993 InParanoid:P20028 OrthoDB:EOG4ZKH24
PhylomeDB:P20028 GenomeRNAi:33210 NextBio:782449 Bgee:P20028
GermOnline:CG4033 Uniprot:P20028
Length = 1129
Score = 128 (50.1 bits), Expect = 6.1e-09, Sum P(3) = 6.1e-09
Identities = 70/315 (22%), Positives = 139/315 (44%)
Query: 66 LKFEQIYLSKPTHWEK--DGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQ 123
+K E I+++KP + D + P ++R +++YS V + +V + P+
Sbjct: 73 MKVESIWIAKPKVPQDVIDVRTREIYPTDSRQLHVSYSGMCSVRLGWSVNGVQKTPINMD 132
Query: 124 HQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKV---LIAQEKM 180
+G++PIMLRS C L T ++ + E + GG F+I G+EK+ LI +
Sbjct: 133 -----LGEVPIMLRSKACNLGQATPEEMVKHGEHDSEWGGIFVIRGNEKIVRMLIMTRRN 187
Query: 181 ATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAIL 240
V S KD + +++ ++ S+L N++ K + L
Sbjct: 188 HPICVKRSSWKDRGQNF-SDLGMLVQTVREDESSL-SNVVHYLNNGTAKFMFSH--VKRL 243
Query: 241 PYIKQEIPIMIVFRALGFVADRDILEHIIYDFD-DPEMMEMVKPSLDEAFVIQEQNV--- 296
Y+ P+ ++ + L D +I ++ ++ D + V+ L E +Q +NV
Sbjct: 244 SYV----PVCLILKCLMDYTDEEIYNRLVQGYESDQYYVSCVQAMLRE---VQNENVYTH 296
Query: 297 --ALNFIGA--RGARPGVTKERRIKYARE-ILQKEMLPHVGVSDFCETKKAYFLGYMVHR 351
+FIG R P V + + + IL++ ++ H+ D E K + +M+ +
Sbjct: 297 AQCKSFIGNLFRARFPEVPEWQPDDDVTDFILRERVMIHL---DTYEDKFQLIV-FMIQK 352
Query: 352 LLLASLGRRELDDRD 366
L + G+ ++++ D
Sbjct: 353 LFQCAQGKYKVENVD 367
Score = 103 (41.3 bits), Expect = 6.1e-09, Sum P(3) = 6.1e-09
Identities = 31/100 (31%), Positives = 49/100 (49%)
Query: 402 LATGNWGDQKKAH-QARAGV---SQVLNRLTFASSLSHLRRVN-SPIGRDGKLAKPRQLH 456
LATGN + +G+ ++ +NR+ + +SH R ++ + + RQL
Sbjct: 434 LATGNIASRTGLGLMQNSGLVIMAENINRMRY---MSHFRAIHRGSYFTTMRTTEARQLL 490
Query: 457 NTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPIL 496
WG ICP TP+G GL+ +L L IS+ +P P L
Sbjct: 491 PDAWGFICPVHTPDGTPCGLLNHLTLTCEISM--RPDPKL 528
Score = 37 (18.1 bits), Expect = 6.1e-09, Sum P(3) = 6.1e-09
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 641 VEYIDTLEEETTMIAMSPR 659
VEYI TLE+ IA+ +
Sbjct: 629 VEYIGTLEQLYMEIAIDAK 647
>UNIPROTKB|F1NLV9 [details] [associations]
symbol:F1NLV9 "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0005736 "DNA-directed
RNA polymerase I complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0007566 "embryo implantation" evidence=IEA]
[GO:0009303 "rRNA transcription" evidence=IEA] [GO:0009790 "embryo
development" evidence=IEA] [GO:0017126 "nucleologenesis"
evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR009674 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF06883 PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005737
GO:GO:0003677 GO:GO:0009303 GO:GO:0005736 GO:GO:0003899 OMA:EVFAGVT
GO:GO:0032549 Gene3D:2.40.270.10 GeneTree:ENSGT00550000074993
GO:GO:0017126 EMBL:AADN02041199 IPI:IPI00576768
Ensembl:ENSGALT00000014017 Uniprot:F1NLV9
Length = 1016
Score = 115 (45.5 bits), Expect = 8.1e-09, Sum P(2) = 8.1e-09
Identities = 38/160 (23%), Positives = 70/160 (43%)
Query: 391 TKIITDGLRYSLATGNWGDQKKAHQAR-AGVSQVLNRLTFASSLSHLRRVNSPIG-RDGK 448
T +T Y LATGN + + +G+ V ++L F LSH R ++ +
Sbjct: 308 TTDVTKSFEYLLATGNLRSKTGLGMLQDSGLCVVGDKLNFVRYLSHFRCIHRGSAFAQMR 367
Query: 449 LAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQP-SPILEFLEEWSMENL 507
R+L WG +CP +TP+G GL+ ++ + I P + + L + +
Sbjct: 368 TTTVRKLLPESWGFLCPVDTPDGEPCGLMNHMTAVCEIVTEMVPVTDLPPLLCALGVVPI 427
Query: 508 EEIAPSAIADATKIFVNGCWVG-IHRD-PEQLMGTLRKLR 545
+ A+ ++ ++G VG + D Q+ LR+ +
Sbjct: 428 DATPSRPYAECYRVLLDGAVVGWVEWDLAPQVAEALRRFK 467
Score = 106 (42.4 bits), Expect = 8.1e-09, Sum P(2) = 8.1e-09
Identities = 29/71 (40%), Positives = 44/71 (61%)
Query: 106 VDITKTV--VRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGG 163
VDI+ +V + QG T +H +G +PIM++S C L L+ ++L + +E + GG
Sbjct: 1 VDISWSVNDIPQG----TIKHP---VGFVPIMVKSKLCNLYNLSPQELIQHHEEEEEMGG 53
Query: 164 YFIINGSEKVL 174
YFIING EKV+
Sbjct: 54 YFIINGLEKVI 64
>UNIPROTKB|F8VRU2 [details] [associations]
symbol:POLR3B "DNA-directed RNA polymerase III subunit
RPC2" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
InterPro:IPR007642 InterPro:IPR015712 Pfam:PF04561
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
EMBL:AC009721 GO:GO:0032549 EMBL:AC078992 EMBL:AC080012
HGNC:HGNC:30348 IPI:IPI01022585 ProteinModelPortal:F8VRU2
SMR:F8VRU2 Ensembl:ENST00000549569 ArrayExpress:F8VRU2 Bgee:F8VRU2
Uniprot:F8VRU2
Length = 170
Score = 132 (51.5 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 40/119 (33%), Positives = 63/119 (52%)
Query: 256 LGFVADRDILEHIIYDFDDPEMMEMVKPSLDEAFVIQ--EQNVALNFIGARGARP----G 309
+G +D++I++ I + +M PSL+E Q Q AL +IG + R G
Sbjct: 1 MGVESDQEIVQMI---GTEEHVMAAFGPSLEECQKAQIFTQMQALKYIGNKVRRQRMWGG 57
Query: 310 VTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY 368
K+ +I+ ARE+L +L HV V +F K + MV R++LA G ++DDRD+Y
Sbjct: 58 GPKKTKIEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQ-GDNKVDDRDYY 115
>UNIPROTKB|P0A8V2 [details] [associations]
symbol:rpoB "RNA polymerase, beta subunit" species:83333
"Escherichia coli K-12" [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016020
"membrane" evidence=IDA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0005737 GO:GO:0016020 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003677 GO:GO:0006351 EMBL:U00006 DrugBank:DB01045 PDB:3IYD
PDBsum:3IYD GO:GO:0003899 EMBL:V00339 PDB:3T72 PDBsum:3T72
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 PDB:3LU0 PDBsum:3LU0 KO:K03043
ProtClustDB:PRK00405 Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3
TIGRFAMs:TIGR02013 OMA:FMTWEGY EMBL:V00340 EMBL:U76222 EMBL:V00341
EMBL:M38292 EMBL:M38293 EMBL:M38287 EMBL:M38304 EMBL:U77436
EMBL:M38303 PIR:F65205 RefSeq:NP_418414.1 RefSeq:YP_491474.1
PDB:3LTI PDB:3TBI PDBsum:3LTI PDBsum:3TBI ProteinModelPortal:P0A8V2
SMR:P0A8V2 DIP:DIP-35777N IntAct:P0A8V2 MINT:MINT-1222430
SWISS-2DPAGE:P0A8V2 PaxDb:P0A8V2 PRIDE:P0A8V2
EnsemblBacteria:EBESCT00000000939 EnsemblBacteria:EBESCT00000000940
EnsemblBacteria:EBESCT00000000941 EnsemblBacteria:EBESCT00000017696
GeneID:12934478 GeneID:948488 KEGG:ecj:Y75_p3210 KEGG:eco:b3987
PATRIC:32123495 EchoBASE:EB0887 EcoGene:EG10894
BioCyc:EcoCyc:RPOB-MONOMER BioCyc:ECOL316407:JW3950-MONOMER
BioCyc:MetaCyc:RPOB-MONOMER BindingDB:P0A8V2 ChEMBL:CHEMBL1852
DrugBank:DB01220 EvolutionaryTrace:P0A8V2 Genevestigator:P0A8V2
Uniprot:P0A8V2
Length = 1342
Score = 107 (42.7 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 24/69 (34%), Positives = 43/69 (62%)
Query: 420 VSQVLNRLTFASSLSHLRRVNS--PIGRDGKLA--KPRQLHNTLWGMICPAETPEGAAVG 475
+SQ +++ S ++H RR+++ P G + A + R +H T +G +CP ETPEG +G
Sbjct: 511 LSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIG 570
Query: 476 LVKNLALMA 484
L+ +L++ A
Sbjct: 571 LINSLSVYA 579
Score = 94 (38.1 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 41/140 (29%), Positives = 69/140 (49%)
Query: 31 IQM-SVQRIVEDSPQIDLQAEAQHTSTEVETPPRYLLKFEQIYLSKPTHWEKDGSPSPMM 89
IQ+ S Q+ +E P+ EA S V Y E Y+S + G P
Sbjct: 30 IQLDSFQKFIEQDPEGQYGLEAAFRS--VFPIQSYSGNSELQYVSY-----RLGEPV-FD 81
Query: 90 PNEARLRNLTYSAPLYVDITKTVVRQGEEPVTT----QHQKSFIGKIPIMLRSTYCLLNG 145
E ++R +TYSAPL V + + V+ + E P T + Q+ ++G+IP+M + ++NG
Sbjct: 82 VQECQIRGVTYSAPLRVKL-RLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVING 140
Query: 146 LTDRDLTELNECPLDPGGYF 165
T+R + +++ PG +F
Sbjct: 141 -TERVI--VSQLHRSPGVFF 157
Score = 70 (29.7 bits), Expect = 0.00051, Sum P(2) = 0.00051
Identities = 37/150 (24%), Positives = 71/150 (47%)
Query: 147 TDRDLTE----LNECPL-DPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEI 201
T +D+ E + E PL G F+ING+E+V+++Q + + DS KT
Sbjct: 113 TVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFF-----DSDKG-KTHS 166
Query: 202 RSCLEHSSR--PTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFV 259
+ +++R P W++ + K + RI ++++P I+ RAL +
Sbjct: 167 SGKVLYNARIIPYRGSWLDF-----EFDPKDNLFVRIDR-----RRKLPATIILRALNYT 216
Query: 260 ADR--DIL-EHIIYDFDDPEM-MEMVKPSL 285
++ D+ E +I++ D ++ ME+V L
Sbjct: 217 TEQILDLFFEKVIFEIRDNKLQMELVPERL 246
>TIGR_CMR|CBU_0231 [details] [associations]
symbol:CBU_0231 "DNA-directed RNA polymerase, beta
subunit" species:227377 "Coxiella burnetii RSA 493" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
EMBL:CP001019 EMBL:U86688 GenomeReviews:CP001019_GR eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
RefSeq:YP_002304193.1 ProteinModelPortal:B6J270 STRING:B6J270
PRIDE:B6J270 GeneID:7014190 KEGG:cbg:CbuG_1774 PATRIC:17914647
OMA:HANEEIT Uniprot:B6J270
Length = 1375
Score = 111 (44.1 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 26/69 (37%), Positives = 43/69 (62%)
Query: 420 VSQVLNRLTFASSLSHLRRVNS--PIGRDGKLA--KPRQLHNTLWGMICPAETPEGAAVG 475
+SQ +++ S ++H RRV++ P G + A + R +H T +G +CP ETPEG +G
Sbjct: 532 LSQFMDQNNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHVTHYGRVCPIETPEGPNIG 591
Query: 476 LVKNLALMA 484
L+ +LA+ A
Sbjct: 592 LINSLAVFA 600
Score = 89 (36.4 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 25/80 (31%), Positives = 46/80 (57%)
Query: 92 EARLRNLTYSAPLYVDITKTVVRQGEEPV------TTQHQKSFIGKIPIMLRSTYCLLNG 145
E +LR LTY+APL V++ + V+ E P + Q+ ++G+IP+M + ++NG
Sbjct: 102 ECKLRGLTYAAPLKVNM-RLVIYDKEAPAGKKAIKDIKEQEVYMGEIPLMTETGSLVING 160
Query: 146 LTDRDLTELNECPLDPGGYF 165
T+R + +++ PG +F
Sbjct: 161 -TERVV--VSQLHRSPGVFF 177
>TIGR_CMR|CHY_2318 [details] [associations]
symbol:CHY_2318 "DNA-directed RNA polymerase, beta
subunit" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0006351 GO:GO:0003899
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03043 ProtClustDB:PRK00405 Gene3D:2.30.150.10
PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013 HOGENOM:HOG000218611
OMA:FMTWEGY RefSeq:YP_361127.1 ProteinModelPortal:Q3A9Q7
STRING:Q3A9Q7 PRIDE:Q3A9Q7 GeneID:3728817 KEGG:chy:CHY_2318
PATRIC:21277705 BioCyc:CHYD246194:GJCN-2317-MONOMER Uniprot:Q3A9Q7
Length = 1132
Score = 106 (42.4 bits), Expect = 1.0e-05, Sum P(3) = 1.0e-05
Identities = 24/72 (33%), Positives = 44/72 (61%)
Query: 420 VSQVLNRLTFASSLSHLRRVNS--PIGRDGKLA--KPRQLHNTLWGMICPAETPEGAAVG 475
+SQ +++ + L+H RR+++ P G + A + R +H++ +G +CP ETPEG +G
Sbjct: 402 LSQFMDQTNPLAELTHKRRLSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIG 461
Query: 476 LVKNLALMAYIS 487
L+ NL A ++
Sbjct: 462 LIGNLTTYARVN 473
Score = 80 (33.2 bits), Expect = 1.0e-05, Sum P(3) = 1.0e-05
Identities = 31/103 (30%), Positives = 48/103 (46%)
Query: 83 GSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCL 142
G P + E + R+ TYSAPL V + GE + Q+ F+G P+M +
Sbjct: 69 GKPKYSV-EECKERDFTYSAPLRVKVRLLNKETGE----IKEQEVFLGDFPLMTEKGTFI 123
Query: 143 LNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTV 185
NG +R + +++ PG YF SE+V +KM T+
Sbjct: 124 FNG-AERVV--ISQMVRSPGVYF----SEQVDPNGKKMYLATI 159
Score = 51 (23.0 bits), Expect = 1.0e-05, Sum P(3) = 1.0e-05
Identities = 10/42 (23%), Positives = 25/42 (59%)
Query: 245 QEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLD 286
+++P+ ++ +ALG+ + I E ++D DD + + + + D
Sbjct: 185 RKLPVTVLLKALGYESKGRIAE--LFDHDDKIIATLERDNTD 224
>TIGR_CMR|CPS_4769 [details] [associations]
symbol:CPS_4769 "DNA-directed RNA polymerase, beta
subunit" species:167879 "Colwellia psychrerythraea 34H" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
OMA:FMTWEGY RefSeq:YP_271413.1 STRING:Q47UV9 PRIDE:Q47UV9
GeneID:3523343 KEGG:cps:CPS_4769 PATRIC:21472355
BioCyc:CPSY167879:GI48-4775-MONOMER Uniprot:Q47UV9
Length = 1342
Score = 106 (42.4 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 36/138 (26%), Positives = 69/138 (50%)
Query: 420 VSQVLNRLTFASSLSHLRRVNS--PIGRDGKLA--KPRQLHNTLWGMICPAETPEGAAVG 475
+SQ +++ S ++H RR+++ P G + A + R +H T +G +CP ETPEG +G
Sbjct: 512 LSQFMDQNNPLSEVTHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIG 571
Query: 476 LVKNLALMAYIS-VGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDP 534
L+ +L+ A + G +P + ++ + ++ + SAI + FV D
Sbjct: 572 LINSLSCYARTNDFGFLETPYRKVIDGLVTDEIDYL--SAIEEGN--FVIAQANAERNDS 627
Query: 535 EQLMGTLRKLRRQMDIIV 552
+L+ L R + + I+
Sbjct: 628 NKLVQDLVNCRHRNEFIL 645
Score = 85 (35.0 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 25/78 (32%), Positives = 45/78 (57%)
Query: 92 EARLRNLTYSAPLYVDITKTVVRQGEEPVTT----QHQKSFIGKIPIMLRSTYCLLNGLT 147
E ++R +TYSAPL V + + VV E T + Q+ ++G+IP+M + ++NG T
Sbjct: 84 ECQIRGVTYSAPLRVKL-RLVVYDKEAAAGTVKDIKEQEVYMGEIPLMTDNGTFVING-T 141
Query: 148 DRDLTELNECPLDPGGYF 165
+R + +++ PG +F
Sbjct: 142 ERVI--VSQLHRSPGVFF 157
>UNIPROTKB|Q9KV30 [details] [associations]
symbol:rpoB "DNA-directed RNA polymerase subunit beta"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006351 GO:GO:0003899
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03043 ProtClustDB:PRK00405 Gene3D:2.30.150.10
PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013 PIR:F82336
RefSeq:NP_229982.1 PDB:3E7H PDBsum:3E7H ProteinModelPortal:Q9KV30
PRIDE:Q9KV30 DNASU:2615094 GeneID:2615094 KEGG:vch:VC0328
PATRIC:20079713 OMA:IGYIYML EvolutionaryTrace:Q9KV30 Uniprot:Q9KV30
Length = 1341
Score = 103 (41.3 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 24/69 (34%), Positives = 42/69 (60%)
Query: 420 VSQVLNRLTFASSLSHLRRVNS--PIGRDGKLA--KPRQLHNTLWGMICPAETPEGAAVG 475
+SQ +++ S ++H RR+++ P G + A + R +H T +G +CP ETPEG +G
Sbjct: 511 LSQFMDQNNPLSEVTHKRRISALGPGGLTRERAGFEVRDVHVTHYGRLCPIETPEGPNIG 570
Query: 476 LVKNLALMA 484
L+ +L+ A
Sbjct: 571 LINSLSAFA 579
Score = 87 (35.7 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 43/151 (28%), Positives = 71/151 (47%)
Query: 19 LVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPRYLLKFEQIYLSKPTH 78
L+ QLDSF++FI E P+ EA S V Y E Y+S
Sbjct: 27 LLSIQLDSFEKFI--------EQDPEGQYGLEAAFRS--VFPIQSYNGNSELQYVSY--- 73
Query: 79 WEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTT----QHQKSFIGKIPI 134
+ G P E ++R +TYS PL V + + V+ + P T + Q+ ++G+IP+
Sbjct: 74 --RLGEPV-FDVKECQIRGVTYSKPLRVKL-RLVIFDKDAPAGTVKDIKEQEVYMGEIPL 129
Query: 135 MLRSTYCLLNGLTDRDLTELNECPLDPGGYF 165
M + ++NG T+R + +++ PG +F
Sbjct: 130 MTENGTFVING-TERVI--VSQLHRSPGVFF 157
>TIGR_CMR|VC_0328 [details] [associations]
symbol:VC_0328 "DNA-directed RNA polymerase, beta subunit"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006351 GO:GO:0003899
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03043 ProtClustDB:PRK00405 Gene3D:2.30.150.10
PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013 PIR:F82336
RefSeq:NP_229982.1 PDB:3E7H PDBsum:3E7H ProteinModelPortal:Q9KV30
PRIDE:Q9KV30 DNASU:2615094 GeneID:2615094 KEGG:vch:VC0328
PATRIC:20079713 OMA:IGYIYML EvolutionaryTrace:Q9KV30 Uniprot:Q9KV30
Length = 1341
Score = 103 (41.3 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 24/69 (34%), Positives = 42/69 (60%)
Query: 420 VSQVLNRLTFASSLSHLRRVNS--PIGRDGKLA--KPRQLHNTLWGMICPAETPEGAAVG 475
+SQ +++ S ++H RR+++ P G + A + R +H T +G +CP ETPEG +G
Sbjct: 511 LSQFMDQNNPLSEVTHKRRISALGPGGLTRERAGFEVRDVHVTHYGRLCPIETPEGPNIG 570
Query: 476 LVKNLALMA 484
L+ +L+ A
Sbjct: 571 LINSLSAFA 579
Score = 87 (35.7 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 43/151 (28%), Positives = 71/151 (47%)
Query: 19 LVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVETPPRYLLKFEQIYLSKPTH 78
L+ QLDSF++FI E P+ EA S V Y E Y+S
Sbjct: 27 LLSIQLDSFEKFI--------EQDPEGQYGLEAAFRS--VFPIQSYNGNSELQYVSY--- 73
Query: 79 WEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTT----QHQKSFIGKIPI 134
+ G P E ++R +TYS PL V + + V+ + P T + Q+ ++G+IP+
Sbjct: 74 --RLGEPV-FDVKECQIRGVTYSKPLRVKL-RLVIFDKDAPAGTVKDIKEQEVYMGEIPL 129
Query: 135 MLRSTYCLLNGLTDRDLTELNECPLDPGGYF 165
M + ++NG T+R + +++ PG +F
Sbjct: 130 MTENGTFVING-TERVI--VSQLHRSPGVFF 157
>TIGR_CMR|SO_0224 [details] [associations]
symbol:SO_0224 "DNA-directed RNA polymerase, beta subunit"
species:211586 "Shewanella oneidensis MR-1" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
OMA:FMTWEGY RefSeq:NP_715864.1 ProteinModelPortal:Q8EK74
PRIDE:Q8EK74 GeneID:1168107 KEGG:son:SO_0224 PATRIC:23520141
Uniprot:Q8EK74
Length = 1345
Score = 108 (43.1 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 32/103 (31%), Positives = 57/103 (55%)
Query: 420 VSQVLNRLTFASSLSHLRRVNS--PIGRDGKLA--KPRQLHNTLWGMICPAETPEGAAVG 475
+SQ +++ S ++H RR+++ P G + A + R +H T +G +CP ETPEG +G
Sbjct: 512 LSQFMDQNNPLSEVTHKRRISALGPGGLTRERAGFEVRDVHPTHYGRLCPIETPEGPNIG 571
Query: 476 LVKNLALMAYI-SVGSQPSPILEFLEEWSMENLEEIAPSAIAD 517
L+ +LA A S G +P + ++ + +E + SAI +
Sbjct: 572 LINSLASFARTNSYGFLETPYRKVVDGVITDEVEYL--SAIEE 612
Score = 80 (33.2 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 24/78 (30%), Positives = 44/78 (56%)
Query: 92 EARLRNLTYSAPLYVDITKTVVRQGEEPVTT----QHQKSFIGKIPIMLRSTYCLLNGLT 147
E ++R +TYSAPL V + + V+ E T + Q+ ++G IP+M + ++NG T
Sbjct: 84 ECQIRGVTYSAPLRVKL-RMVLYDREAAAGTVKDIKEQEVYMGDIPLMTDNGTFVING-T 141
Query: 148 DRDLTELNECPLDPGGYF 165
+R + +++ PG +F
Sbjct: 142 ERVI--VSQLHRSPGVFF 157
>TIGR_CMR|APH_1024 [details] [associations]
symbol:APH_1024 "DNA-directed RNA polymerase, beta
subunit" species:212042 "Anaplasma phagocytophilum HZ" [GO:0000345
"cytosolic DNA-directed RNA polymerase complex" evidence=ISS]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 RefSeq:YP_505583.1 ProteinModelPortal:Q2GJ68
STRING:Q2GJ68 PRIDE:Q2GJ68 GeneID:3930425 KEGG:aph:APH_1024
PATRIC:20950798 KO:K03043 OMA:QRDLTYA ProtClustDB:PRK00405
BioCyc:APHA212042:GHPM-1031-MONOMER Gene3D:2.30.150.10
PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013 Uniprot:Q2GJ68
Length = 1383
Score = 119 (46.9 bits), Expect = 7.7e-05, Sum P(2) = 7.7e-05
Identities = 32/103 (31%), Positives = 59/103 (57%)
Query: 420 VSQVLNRLTFASSLSHLRRVNS--PIGRDGKLA--KPRQLHNTLWGMICPAETPEGAAVG 475
+SQ +++ S ++H RR+++ P G + A + R +H T +G ICP ETPEG +G
Sbjct: 536 LSQFMDQTNPLSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGQNIG 595
Query: 476 LVKNLALMAYIS-VGSQPSPILEFLEEWSMENLEEIAPSAIAD 517
L+ +LA+ A I+ G SP + ++ +++E + + +D
Sbjct: 596 LISSLAIYAKINKYGFIESPYRKVIDGVVTDSVEYLLATQESD 638
Score = 66 (28.3 bits), Expect = 7.7e-05, Sum P(2) = 7.7e-05
Identities = 43/179 (24%), Positives = 86/179 (48%)
Query: 96 RNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELN 155
R +T+S P+ + + + VV + +E V+ + K + + + Y + +++++ +
Sbjct: 98 RGITFSVPMRITL-RFVVWKVQE-VSFKEVKYVVDEGTLERSVKY-----MKEQEVS-IG 149
Query: 156 ECPLDPG-GYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSR--PT 212
+ P+ G FIING E+V+++Q + VF D Y + L +S+R P
Sbjct: 150 DLPMMTSYGTFIINGIERVIVSQMHRSPG---VFFDSDKGKTYSS---GKLIYSARIIPY 203
Query: 213 STLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYD 271
W++ + K I RI K+++P+ + +ALG +++ DIL+ YD
Sbjct: 204 RGSWLDF-----EFDIKDIIYFRIDK-----KRKLPVTYLLKALG-MSNNDILD-TFYD 250
>TIGR_CMR|CJE_0528 [details] [associations]
symbol:CJE_0528 "DNA-directed RNA polymerase, beta
subunit" species:195099 "Campylobacter jejuni RM1221" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
OMA:FMTWEGY RefSeq:YP_178546.1 ProteinModelPortal:Q5HVY9
STRING:Q5HVY9 GeneID:3231289 KEGG:cjr:CJE0528 PATRIC:20042778
BioCyc:CJEJ195099:GJC0-543-MONOMER Uniprot:Q5HVY9
Length = 1378
Score = 121 (47.7 bits), Expect = 9.7e-05, Sum P(3) = 9.7e-05
Identities = 52/193 (26%), Positives = 91/193 (47%)
Query: 310 VTKERRIKYAREILQ-KEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY 368
+T E IK A+ +++ K H+ D ++ +G ++ L L + + RD +
Sbjct: 433 LTNEDIIKTAKYLIKVKNGKGHIDDRDHLGNRRIRSIGELLANELHLGLAKMQKAIRDKF 492
Query: 369 VRMYAQKFIDRGKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLT 428
+ A +D+ ++L I K+IT + TG G +SQ +++
Sbjct: 493 TSLNAD--LDKVMPYDL---INPKMITTTI-IEFFTG--GQ----------LSQFMDQTN 534
Query: 429 FASSLSHLRRVNSPIGRDGKLAKPR------QLHNTLWGMICPAETPEGAAVGLVKNLAL 482
S ++H RR+ S +G +G L K R +H T +G ICP ETPEG +GL+ L+
Sbjct: 535 PLSEVTHKRRL-SALG-EGGLVKERAGFEVRDVHATHYGRICPVETPEGQNIGLINTLST 592
Query: 483 MAYIS-VGSQPSP 494
A ++ +G +P
Sbjct: 593 YAKVNELGFVEAP 605
Score = 59 (25.8 bits), Expect = 9.7e-05, Sum P(3) = 9.7e-05
Identities = 23/82 (28%), Positives = 38/82 (46%)
Query: 83 GSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGE---EPVTTQ---HQKSFIGKIPIML 136
G P + E R LTYS L + I T+ + E E V + Q+ +I +IP+M
Sbjct: 77 GKPKYTI-RECMERGLTYSVNLKMKIRLTLHEKDEKTGEKVGVKDIKEQEIYIREIPLMT 135
Query: 137 RSTYCLLNGLTDRDLTELNECP 158
++NG+ + +L+ P
Sbjct: 136 DRVSFIINGVERVVVNQLHRSP 157
Score = 49 (22.3 bits), Expect = 9.7e-05, Sum P(3) = 9.7e-05
Identities = 8/23 (34%), Positives = 19/23 (82%)
Query: 244 KQEIPIMIVFRALGFVADRDILE 266
++++P+ ++FRALG+ +DI++
Sbjct: 204 RRKVPVTMLFRALGY-KKQDIIK 225
>TIGR_CMR|DET_0603 [details] [associations]
symbol:DET_0603 "DNA-directed RNA polymerase, beta
subunit" species:243164 "Dehalococcoides ethenogenes 195"
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 OMA:FMTWEGY
RefSeq:YP_181345.1 ProteinModelPortal:Q3Z8V4 STRING:Q3Z8V4
PRIDE:Q3Z8V4 GeneID:3230060 KEGG:det:DET0603 PATRIC:21608277
BioCyc:DETH243164:GJNF-604-MONOMER Uniprot:Q3Z8V4
Length = 1272
Score = 93 (37.8 bits), Expect = 9.8e-05, Sum P(2) = 9.8e-05
Identities = 35/145 (24%), Positives = 73/145 (50%)
Query: 420 VSQVLNRLTFASSLSHLRRVNS--PIGRDGKLA--KPRQLHNTLWGMICPAETPEGAAVG 475
+SQ +++ + +++ RR+++ P G + A R +H + +G ICP ETPEG +G
Sbjct: 395 LSQFMDQTNPLAEITNKRRLSAMGPGGLSRERAGFDVRDVHYSHYGRICPIETPEGPNIG 454
Query: 476 LVKNLALMAYIS-VGSQPSPILEFLEEWSMENLEEIA---PSAIADATKIFVNGCWVGIH 531
L+ +LA + I+ G +P + + + + + +A++D K+ + V +
Sbjct: 455 LIGSLATYSRINRYGFVETPYRKVYSKLKNNDKKLVGLKLAAAVSDKDKVLASAGSV-VS 513
Query: 532 RDPEQLMGTLRKLRRQ-MDIIVSEV 555
+ +L+ L + Q M + +EV
Sbjct: 514 EENFKLISKLPECDIQVMPFVSAEV 538
Score = 91 (37.1 bits), Expect = 9.8e-05, Sum P(2) = 9.8e-05
Identities = 39/147 (26%), Positives = 73/147 (49%)
Query: 163 GYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMAR 222
G FI +G+E+V+++Q + + VY F++ D + RP N++
Sbjct: 127 GTFITSGTERVVVSQ-LLRSPGVY-FTISDDPA------------TGRPLCH--TNLIPS 170
Query: 223 GGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVK 282
G L+ + +I++ +++IP+ + RA+G+ D DIL +DPE ++
Sbjct: 171 RGAWLEFETSNRDVISVKIDGRRKIPVSTLLRAIGYSDDLDILNLFEVIDNDPER-HYIQ 229
Query: 283 PSLDEAFVIQEQNVALNFIGARGARPG 309
S+D +I+++ AL I +R RPG
Sbjct: 230 SSIDRDPLIKDEISALIDIYSR-LRPG 255
>TIGR_CMR|NSE_0678 [details] [associations]
symbol:NSE_0678 "DNA-directed RNA polymerase, beta
subunit" species:222891 "Neorickettsia sennetsu str. Miyayama"
[GO:0000345 "cytosolic DNA-directed RNA polymerase complex"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
OMA:FMTWEGY RefSeq:YP_506556.1 ProteinModelPortal:Q2GD90
STRING:Q2GD90 GeneID:3931355 KEGG:nse:NSE_0678 PATRIC:22681375
BioCyc:NSEN222891:GHFU-692-MONOMER Uniprot:Q2GD90
Length = 1358
Score = 122 (48.0 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 36/123 (29%), Positives = 65/123 (52%)
Query: 418 AGVSQVLNRLTFASSLSHLRRVNS--PIGRD-GKLA-KPRQLHNTLWGMICPAETPEGAA 473
+ +SQ +++ S ++H RR+++ P G + G+ + R +H T +G IC ETPEGA
Sbjct: 505 SALSQFMDQTNPLSEITHKRRISALGPGGLNRGRAGFEVRDVHTTHYGRICATETPEGAT 564
Query: 474 VGLVKNLALMAYIS-VGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHR 532
+GL+ +LA+ A I+ G +P ++ + + +E+ + D K N C +
Sbjct: 565 IGLINSLAIYAKINKYGFIETPY-RYVRDGRVT--DEVTYLSAIDEIK--ANICQASVRV 619
Query: 533 DPE 535
D E
Sbjct: 620 DEE 622
Score = 61 (26.5 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 45/172 (26%), Positives = 80/172 (46%)
Query: 96 RNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELN 155
R +TYSAPL I + VV G+E T + G + ST + + ++++ +
Sbjct: 79 RGITYSAPLRA-ILRLVVF-GDE---TSGE----GSEGV---STEPAVKDVREQEIY-MG 125
Query: 156 ECPL-DPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDSKYAYKTEIRSCLEHSSR--PT 212
+ P+ G FIING E+V+++Q A + D+ A I L + +R P
Sbjct: 126 DIPIMSKNGTFIINGVERVVVSQMHRAPGVFF-----DNDKA--RSISGKLNYIARIIPY 178
Query: 213 STLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDI 264
W++ + K + RI K+++P+ + RALG ++++DI
Sbjct: 179 RGSWLDF-----EFDAKDVLYFRIDK-----KRKLPVTFLLRALG-LSNKDI 219
Score = 57 (25.1 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 23/100 (23%), Positives = 47/100 (47%)
Query: 63 RYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQG--EEPV 120
R L+F + +P H ++ G + A LR + ++ D T +G EP
Sbjct: 56 RASLEFVSCRMGEPKH-DEYGCVERGITYSAPLRAILRLV-VFGDETSGEGSEGVSTEPA 113
Query: 121 T--TQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECP 158
+ Q+ ++G IPIM ++ ++NG+ +++++ P
Sbjct: 114 VKDVREQEIYMGDIPIMSKNGTFIINGVERVVVSQMHRAP 153
>TIGR_CMR|BA_0102 [details] [associations]
symbol:BA_0102 "DNA-directed RNA polymerase, beta subunit"
species:198094 "Bacillus anthracis str. Ames" [GO:0000345
"cytosolic DNA-directed RNA polymerase complex" evidence=ISS]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03043 ProtClustDB:PRK00405 Gene3D:2.30.150.10
PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013 RefSeq:NP_842670.1
RefSeq:YP_026388.1 RefSeq:YP_052605.1 ProteinModelPortal:Q81VT8
IntAct:Q81VT8 PRIDE:Q81VT8 DNASU:1086075
EnsemblBacteria:EBBACT00000010978 EnsemblBacteria:EBBACT00000018107
EnsemblBacteria:EBBACT00000023445 GeneID:1086075 GeneID:2820986
GeneID:2850888 KEGG:ban:BA_0102 KEGG:bar:GBAA_0102 KEGG:bat:BAS0102
HOGENOM:HOG000218611 OMA:FMTWEGY BioCyc:BANT260799:GJAJ-113-MONOMER
BioCyc:BANT261594:GJ7F-115-MONOMER Uniprot:Q81VT8
Length = 1177
Score = 100 (40.3 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 23/72 (31%), Positives = 44/72 (61%)
Query: 420 VSQVLNRLTFASSLSHLRRVNS--PIGRDGKLA--KPRQLHNTLWGMICPAETPEGAAVG 475
+SQ +++ + L+H RR+++ P G + A + R +H + +G +CP ETPEG +G
Sbjct: 466 LSQFMDQTNPLAELTHKRRLSALGPGGLTRERAGFEVRDVHYSHYGRMCPIETPEGPNIG 525
Query: 476 LVKNLALMAYIS 487
L+ +L+ A ++
Sbjct: 526 LINSLSSFAKVN 537
Score = 70 (29.7 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 21/76 (27%), Positives = 37/76 (48%)
Query: 83 GSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCL 142
G P + +E + R++TY+APL V + GE + Q F+G P+M + +
Sbjct: 72 GEPKYSV-DECKERDVTYAAPLRVKVRLINKETGE----VKEQDVFMGDFPLMTETGTFV 126
Query: 143 LNGLTDRDLTELNECP 158
+NG +++L P
Sbjct: 127 INGAERVIVSQLVRSP 142
Score = 57 (25.1 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 9/22 (40%), Positives = 18/22 (81%)
Query: 245 QEIPIMIVFRALGFVADRDILE 266
+++P+ ++ RALGF +D++I E
Sbjct: 188 RKLPVTVLLRALGFGSDQEITE 209
>UNIPROTKB|F8W898 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007647
InterPro:IPR009674 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04567
Pfam:PF06883 PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 EMBL:AC012442 GO:GO:0003899
GO:GO:0032549 Gene3D:2.40.270.10 HGNC:HGNC:20454 Gene3D:2.40.50.150
IPI:IPI00916790 ProteinModelPortal:F8W898 SMR:F8W898
Ensembl:ENST00000409894 UCSC:uc010fko.2 ArrayExpress:F8W898
Bgee:F8W898 Uniprot:F8W898
Length = 952
Score = 128 (50.1 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 35/85 (41%), Positives = 45/85 (52%)
Query: 90 PNEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDR 149
P E R R TY L DI V G ++ K F+G +PIM++S C L L +
Sbjct: 100 PAECRGRRSTYRGKLTADINWAV--NG---ISKGIIKQFLGYVPIMVKSKLCNLRNLPPQ 154
Query: 150 DLTELNECPLDPGGYFIINGSEKVL 174
L E +E + GGYFIING EKV+
Sbjct: 155 ALIEHHEEAEEMGGYFIINGIEKVI 179
Score = 48 (22.0 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 28/129 (21%), Positives = 54/129 (41%)
Query: 247 IPIMIVFRALGFVADRDILEHIIYDFDDPEMM-----EMVKPSLDEAFVIQEQNVALNFI 301
+P+ +AL +D I + +I +D + +M++ ++E Q+Q LN++
Sbjct: 247 LPLGFALKALVSFSDYQIFQELIKGKEDDSFLRNSVSQMLRIVMEEGCSTQKQ--VLNYL 304
Query: 302 G-ARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRR 360
G + V + A E L + + + + T+K Y L M +L + G
Sbjct: 305 GECFRVKLNVPDWYPNEQAAEFLFNQCIC-IHLKS--NTEKFYMLCLMTRKLFALAKGEC 361
Query: 361 ELDDRDHYV 369
D+ D V
Sbjct: 362 MEDNPDSLV 370
>TIGR_CMR|GSU_2863 [details] [associations]
symbol:GSU_2863 "DNA-directed RNA polymerase, beta
subunit" species:243231 "Geobacter sulfurreducens PCA" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0003899 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 HOGENOM:HOG000218612
KO:K03043 ProtClustDB:PRK00405 Gene3D:2.30.150.10
PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013 OMA:FMTWEGY
RefSeq:NP_953905.1 ProteinModelPortal:Q748Y6 PRIDE:Q748Y6
GeneID:2686783 KEGG:gsu:GSU2863 PATRIC:22028577
BioCyc:GSUL243231:GH27-2844-MONOMER Uniprot:Q748Y6
Length = 1370
Score = 106 (42.4 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 25/72 (34%), Positives = 44/72 (61%)
Query: 420 VSQVLNRLTFASSLSHLRRVNS--PIGRDGKLA--KPRQLHNTLWGMICPAETPEGAAVG 475
+SQ +++ S ++H RR+++ P G + A + R +H T +G +CP ETPEG +G
Sbjct: 519 LSQFMDQTNPLSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIG 578
Query: 476 LVKNLALMAYIS 487
L+ +L+ A I+
Sbjct: 579 LIASLSTYARIN 590
Score = 74 (31.1 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 61/254 (24%), Positives = 104/254 (40%)
Query: 35 VQRIVEDSPQIDLQAEAQHTSTEVETPP--RYLLKFEQIYLSKPTHWEKDGSPSPMMPNE 92
+++I++ ID+Q + +++TPP R E ++ K KD S +
Sbjct: 18 IKKIIDIPNLIDIQKNSYKRFLQIDTPPEARKNSGLEAVF--KSVFPIKDFSDT------ 69
Query: 93 ARLRNLTYS--APLYVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLN---GLT 147
A L +TY+ AP Y D+ EE Q +F + + +R +N G+
Sbjct: 70 ASLEYVTYTLGAPKY-DV--------EE--CHQRGMTFAAPMKVKVRLVVWDVNKDTGVR 118
Query: 148 D-RDLTE----LNECPL-DPGGYFIINGSEKVLIAQEKMATNTVYVFSM----KDSKYAY 197
RD+ E E PL G FIING+E+V+++Q + Y K Y
Sbjct: 119 SIRDIKEQEVYFGEIPLMTENGTFIINGTERVIVSQLHRSPGVFYDHDKGKTHSSGKVLY 178
Query: 198 KTEI---R-SCLEHSSRPTSTLWVNMMARGGQ--SLKKSAIGQRIIAILPYIKQEIPIMI 251
+ R S L+ L+V + R ++ A+G A+L Y + I++
Sbjct: 179 SARVIPYRGSWLDFEFDHKDILFVRIDRRRKMPATVLLKALGYSAEALLNYFYKSEEILV 238
Query: 252 VFRALGFVADRDIL 265
+ AD ++L
Sbjct: 239 AAEGMWKKADPELL 252
>UNIPROTKB|P60281 [details] [associations]
symbol:rpoB "DNA-directed RNA polymerase subunit beta"
species:246196 "Mycobacterium smegmatis str. MC2 155" [GO:0005515
"protein binding" evidence=IPI] HAMAP:MF_01321 InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR010243
InterPro:IPR014724 InterPro:IPR015712 InterPro:IPR019462
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF10385 PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0003677
EMBL:CP000480 EMBL:CP001663 GenomeReviews:CP000480_GR GO:GO:0006351
GO:GO:0003899 eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
HOGENOM:HOG000218611 OMA:FMTWEGY EMBL:AJ605718
RefSeq:YP_006566096.1 RefSeq:YP_885753.1 ProteinModelPortal:P60281
IntAct:P60281 STRING:P60281 EnsemblBacteria:EBMYCT00000043175
GeneID:13429143 GeneID:4535217 KEGG:msm:MSMEG_1367 PATRIC:18075189
BioCyc:MSME246196:GJ4Y-1367-MONOMER Uniprot:P60281
Length = 1169
Score = 102 (41.0 bits), Expect = 0.00035, Sum P(3) = 0.00035
Identities = 24/72 (33%), Positives = 45/72 (62%)
Query: 420 VSQVLNRLTFASSLSHLRRVNS--PIGRDGKLA--KPRQLHNTLWGMICPAETPEGAAVG 475
+SQ +++ S L+H RR+++ P G + A + R +H + +G +CP ETPEG +G
Sbjct: 427 LSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPNIG 486
Query: 476 LVKNLALMAYIS 487
L+ +L++ A ++
Sbjct: 487 LIGSLSVYARVN 498
Score = 77 (32.2 bits), Expect = 0.00035, Sum P(3) = 0.00035
Identities = 25/87 (28%), Positives = 45/87 (51%)
Query: 91 NEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRD 150
+E + +++TY+APL+V T + + +Q F+G P+M ++NG T+R
Sbjct: 111 DECKDKDMTYAAPLFV--TAEFINNNTGEIKSQ--TVFMGDFPMMTEKGTFIING-TERV 165
Query: 151 LTELNECPLDPGGYF---IINGSEKVL 174
+ +++ PG YF I +EK L
Sbjct: 166 V--VSQLVRSPGVYFDETIDKSTEKTL 190
Score = 43 (20.2 bits), Expect = 0.00035, Sum P(3) = 0.00035
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 606 GWQVLVQSGVVEYIDTLEEE 625
GW + V +GV ++ L EE
Sbjct: 934 GWNIDVAAGVPDWASKLPEE 953
>TIGR_CMR|SPO_3508 [details] [associations]
symbol:SPO_3508 "DNA-directed RNA polymerase, beta
subunit" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000345
"cytosolic DNA-directed RNA polymerase complex" evidence=ISS]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 OMA:QRDLTYA ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
RefSeq:YP_168703.1 ProteinModelPortal:Q5LMQ5 PRIDE:Q5LMQ5
GeneID:3196296 KEGG:sil:SPO3508 PATRIC:23380485 Uniprot:Q5LMQ5
Length = 1378
Score = 108 (43.1 bits), Expect = 0.00043, Sum P(2) = 0.00043
Identities = 25/72 (34%), Positives = 44/72 (61%)
Query: 420 VSQVLNRLTFASSLSHLRRVNS--PIGRDGKLA--KPRQLHNTLWGMICPAETPEGAAVG 475
+SQ +++ S ++H RR+++ P G + A + R +H T +G +CP ETPEG +G
Sbjct: 531 LSQFMDQTNPLSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRMCPIETPEGPNIG 590
Query: 476 LVKNLALMAYIS 487
L+ +LA A ++
Sbjct: 591 LINSLATFARVN 602
Score = 70 (29.7 bits), Expect = 0.00043, Sum P(2) = 0.00043
Identities = 25/79 (31%), Positives = 43/79 (54%)
Query: 92 EARLRNLTYSAPLYVDITKTV--VRQ--GEEPVTT-QHQKSFIGKIPIMLRSTYCLLNGL 146
E R++TYSAPL V + V V + G + V + Q F+G +P+M + ++NG
Sbjct: 88 ECMQRDMTYSAPLKVTLRLIVFDVDEDTGAKSVKDIKEQDVFMGDMPLMTPNGTFIVNG- 146
Query: 147 TDRDLTELNECPLDPGGYF 165
T+R + +++ PG +F
Sbjct: 147 TERVI--VSQMHRSPGVFF 163
>UNIPROTKB|P0A680 [details] [associations]
symbol:rpoB "DNA-directed RNA polymerase subunit beta"
species:1773 "Mycobacterium tuberculosis" [GO:0005515 "protein
binding" evidence=IPI] [GO:0005618 "cell wall" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0040007 "growth" evidence=IMP] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0005829 GO:GO:0005886 GO:GO:0040007
GO:GO:0005618 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0003677 GO:GO:0046677 GO:GO:0006351
EMBL:BX842574 GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
OMA:FMTWEGY EMBL:L27989 EMBL:U12205 EMBL:L05910 EMBL:AF143771
EMBL:AF146567 EMBL:AF147030 EMBL:AF147031 EMBL:AF147033
EMBL:AF147034 EMBL:S71246 PIR:F70535 RefSeq:NP_215181.1
RefSeq:NP_335107.1 RefSeq:YP_006514009.1 ProteinModelPortal:P0A680
SMR:P0A680 IntAct:P0A680 PRIDE:P0A680
EnsemblBacteria:EBMYCT00000001730 EnsemblBacteria:EBMYCT00000071499
GeneID:13318554 GeneID:888164 GeneID:925979 KEGG:mtc:MT0695
KEGG:mtu:Rv0667 KEGG:mtv:RVBD_0667 PATRIC:18123249
TubercuList:Rv0667 BindingDB:P0A680 ChEMBL:CHEMBL2006
Uniprot:P0A680
Length = 1178
Score = 102 (41.0 bits), Expect = 0.00051, Sum P(2) = 0.00051
Identities = 24/72 (33%), Positives = 45/72 (62%)
Query: 420 VSQVLNRLTFASSLSHLRRVNS--PIGRDGKLA--KPRQLHNTLWGMICPAETPEGAAVG 475
+SQ +++ S L+H RR+++ P G + A + R +H + +G +CP ETPEG +G
Sbjct: 436 LSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGLEVRDVHPSHYGRMCPIETPEGPNIG 495
Query: 476 LVKNLALMAYIS 487
L+ +L++ A ++
Sbjct: 496 LIGSLSVYARVN 507
Score = 74 (31.1 bits), Expect = 0.00051, Sum P(2) = 0.00051
Identities = 21/75 (28%), Positives = 40/75 (53%)
Query: 91 NEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLNGLTDRD 150
+E + +++TY+APL+V T + + +Q F+G P+M ++NG T+R
Sbjct: 120 DECKDKDMTYAAPLFV--TAEFINNNTGEIKSQ--TVFMGDFPMMTEKGTFIING-TERV 174
Query: 151 LTELNECPLDPGGYF 165
+ +++ PG YF
Sbjct: 175 V--VSQLVRSPGVYF 187
>UNIPROTKB|P0C501 [details] [associations]
symbol:rpoB "DNA-directed RNA polymerase subunit beta"
species:4530 "Oryza sativa" [GO:0009536 "plastid" evidence=IC]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0009507 GO:GO:0009536 GO:GO:0003677 GO:GO:0006351
EMBL:AY522331 GO:GO:0009295 GO:GO:0003899 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 HOGENOM:HOG000218611
ProteinModelPortal:P0C501 Gramene:P0C501 Genevestigator:P0C501
Uniprot:P0C501
Length = 1075
Score = 110 (43.8 bits), Expect = 0.00062, Sum P(2) = 0.00062
Identities = 32/88 (36%), Positives = 47/88 (53%)
Query: 420 VSQVLNRLTFASSLSHLRRVN--SPIGRDGKLA--KPRQLHNTLWGMICPAETPEGAAVG 475
+SQV ++ + H R+V+ P G G+ A + R +H + +G ICP +T EG VG
Sbjct: 378 LSQVFDQTNPLTQTVHGRKVSCLGPGGLTGRTASFRSRDIHPSHYGRICPIDTSEGINVG 437
Query: 476 LVKNLALMAYISV--GSQPSPILEFLEE 501
L +LA+ A I GS SP E E+
Sbjct: 438 LTGSLAIHARIDHWWGSVESPFYEISEK 465
Score = 64 (27.6 bits), Expect = 0.00062, Sum P(2) = 0.00062
Identities = 27/81 (33%), Positives = 41/81 (50%)
Query: 85 PSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLN 144
PS + +A +LTYS+ LYV + + G + Q Q IG IPIM ++N
Sbjct: 62 PS-IKERDAVYESLTYSSELYVS-ARLIF--GFD---VQKQTISIGNIPIMNSLGTFIIN 114
Query: 145 GLTDRDLTELNECPLDPGGYF 165
G+ R + +N+ L PG Y+
Sbjct: 115 GIY-RIV--INQILLSPGIYY 132
>UNIPROTKB|P0C502 [details] [associations]
symbol:rpoB "DNA-directed RNA polymerase subunit beta"
species:39946 "Oryza sativa Indica Group" [GO:0009536 "plastid"
evidence=IC] HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0009507 GO:GO:0009536 GO:GO:0003677 GO:GO:0006351
EMBL:AY522329 GO:GO:0009295 GO:GO:0003899 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 ProtClustDB:CHL00001
RefSeq:YP_654206.1 ProteinModelPortal:P0C502 GeneID:4126922
Gramene:P0C502 Uniprot:P0C502
Length = 1075
Score = 110 (43.8 bits), Expect = 0.00062, Sum P(2) = 0.00062
Identities = 32/88 (36%), Positives = 47/88 (53%)
Query: 420 VSQVLNRLTFASSLSHLRRVN--SPIGRDGKLA--KPRQLHNTLWGMICPAETPEGAAVG 475
+SQV ++ + H R+V+ P G G+ A + R +H + +G ICP +T EG VG
Sbjct: 378 LSQVFDQTNPLTQTVHGRKVSCLGPGGLTGRTASFRSRDIHPSHYGRICPIDTSEGINVG 437
Query: 476 LVKNLALMAYISV--GSQPSPILEFLEE 501
L +LA+ A I GS SP E E+
Sbjct: 438 LTGSLAIHARIDHWWGSVESPFYEISEK 465
Score = 64 (27.6 bits), Expect = 0.00062, Sum P(2) = 0.00062
Identities = 27/81 (33%), Positives = 41/81 (50%)
Query: 85 PSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLN 144
PS + +A +LTYS+ LYV + + G + Q Q IG IPIM ++N
Sbjct: 62 PS-IKERDAVYESLTYSSELYVS-ARLIF--GFD---VQKQTISIGNIPIMNSLGTFIIN 114
Query: 145 GLTDRDLTELNECPLDPGGYF 165
G+ R + +N+ L PG Y+
Sbjct: 115 GIY-RIV--INQILLSPGIYY 132
>UNIPROTKB|P0C503 [details] [associations]
symbol:rpoB "DNA-directed RNA polymerase subunit beta"
species:39947 "Oryza sativa Japonica Group" [GO:0009536 "plastid"
evidence=IC] HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0009507 GO:GO:0009536 GO:GO:0003677 GO:GO:0006351 EMBL:X15901
EMBL:AY522330 GenomeReviews:AY522330_GR GO:GO:0009295 GO:GO:0003899
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03043 ProtClustDB:CHL00001 PIR:JQ0213 RefSeq:NP_039373.1
ProteinModelPortal:P0C503 STRING:P0C503
EnsemblPlants:LOC_Osp1g00240.1 GeneID:3131432 KEGG:osa:3131432
Gramene:P0C503 OMA:HFLVSEK Uniprot:P0C503
Length = 1075
Score = 110 (43.8 bits), Expect = 0.00062, Sum P(2) = 0.00062
Identities = 32/88 (36%), Positives = 47/88 (53%)
Query: 420 VSQVLNRLTFASSLSHLRRVN--SPIGRDGKLA--KPRQLHNTLWGMICPAETPEGAAVG 475
+SQV ++ + H R+V+ P G G+ A + R +H + +G ICP +T EG VG
Sbjct: 378 LSQVFDQTNPLTQTVHGRKVSCLGPGGLTGRTASFRSRDIHPSHYGRICPIDTSEGINVG 437
Query: 476 LVKNLALMAYISV--GSQPSPILEFLEE 501
L +LA+ A I GS SP E E+
Sbjct: 438 LTGSLAIHARIDHWWGSVESPFYEISEK 465
Score = 64 (27.6 bits), Expect = 0.00062, Sum P(2) = 0.00062
Identities = 27/81 (33%), Positives = 41/81 (50%)
Query: 85 PSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLN 144
PS + +A +LTYS+ LYV + + G + Q Q IG IPIM ++N
Sbjct: 62 PS-IKERDAVYESLTYSSELYVS-ARLIF--GFD---VQKQTISIGNIPIMNSLGTFIIN 114
Query: 145 GLTDRDLTELNECPLDPGGYF 165
G+ R + +N+ L PG Y+
Sbjct: 115 GIY-RIV--INQILLSPGIYY 132
>UNIPROTKB|Q6ENI4 [details] [associations]
symbol:rpoB "DNA-directed RNA polymerase subunit beta"
species:4536 "Oryza nivara" [GO:0009536 "plastid" evidence=IC]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0009507 GO:GO:0009536 GO:GO:0003677 GO:GO:0006351
EMBL:AP006728 GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 RefSeq:YP_052739.1 ProteinModelPortal:Q6ENI4
GeneID:2885962 Gramene:Q6ENI4 ProtClustDB:CHL00001 Uniprot:Q6ENI4
Length = 1075
Score = 110 (43.8 bits), Expect = 0.00062, Sum P(2) = 0.00062
Identities = 32/88 (36%), Positives = 47/88 (53%)
Query: 420 VSQVLNRLTFASSLSHLRRVN--SPIGRDGKLA--KPRQLHNTLWGMICPAETPEGAAVG 475
+SQV ++ + H R+V+ P G G+ A + R +H + +G ICP +T EG VG
Sbjct: 378 LSQVFDQTNPLTQTVHGRKVSCLGPGGLTGRTASFRSRDIHPSHYGRICPIDTSEGINVG 437
Query: 476 LVKNLALMAYISV--GSQPSPILEFLEE 501
L +LA+ A I GS SP E E+
Sbjct: 438 LTGSLAIHARIDHWWGSVESPFYEISEK 465
Score = 64 (27.6 bits), Expect = 0.00062, Sum P(2) = 0.00062
Identities = 27/81 (33%), Positives = 41/81 (50%)
Query: 85 PSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSFIGKIPIMLRSTYCLLN 144
PS + +A +LTYS+ LYV + + G + Q Q IG IPIM ++N
Sbjct: 62 PS-IKERDAVYESLTYSSELYVS-ARLIF--GFD---VQKQTISIGNIPIMNSLGTFIIN 114
Query: 145 GLTDRDLTELNECPLDPGGYF 165
G+ R + +N+ L PG Y+
Sbjct: 115 GIY-RIV--INQILLSPGIYY 132
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.136 0.400 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 661 649 0.00095 120 3 11 22 0.38 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 87
No. of states in DFA: 620 (66 KB)
Total size of DFA: 347 KB (2174 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 52.25u 0.08s 52.33t Elapsed: 00:00:24
Total cpu time: 52.29u 0.08s 52.37t Elapsed: 00:00:24
Start: Thu Aug 15 12:47:18 2013 End: Thu Aug 15 12:47:42 2013