RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7582
         (661 letters)



>d1twfb_ e.29.1.1 (B:) RBP2 {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 1207

 Score =  539 bits (1390), Expect = e-179
 Identities = 343/688 (49%), Positives = 451/688 (65%), Gaps = 64/688 (9%)

Query: 1   LWQEACWIVINAYFDEKGLVRQQLDSFDEFIQMSVQRIVEDSPQIDLQAEAQHTSTEVET 60
           +  E  W VI+A+F EKGLV QQLDSF++F+  ++Q I+ +   + L+  AQHT+     
Sbjct: 8   ITAEDSWAVISAFFREKGLVSQQLDSFNQFVDYTLQDIICEDSTLILEQLAQHTTESDNI 67

Query: 61  PPRYLLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPV 120
             +Y + F +IY++KP   E DG    + P EARLRNLTYS+ L+VD+ K      + P 
Sbjct: 68  SRKYEISFGKIYVTKPMVNESDGVTHALYPQEARLRNLTYSSGLFVDVKKRTYEAIDVPG 127

Query: 121 --------------TTQHQKSFIGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFI 166
                          ++  K FIG++PIMLRS  C L+  T+ DL +L ECP D GGYFI
Sbjct: 128 RELKYELIAEESEDDSESGKVFIGRLPIMLRSKNCYLSEATESDLYKLKECPFDMGGYFI 187

Query: 167 INGSEKVLIAQEKMATNTVYVF-SMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQ 225
           INGSEKVLIAQE+ A N V VF     S  ++  EIRS LE  SR  STL V +  R G 
Sbjct: 188 INGSEKVLIAQERSAGNIVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQVKLYGREGS 247

Query: 226 SLKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSL 285
           S       + I A LPYIKQ+IPI+I+FRALG + D +ILEHI YD +D +M+EM+KP +
Sbjct: 248 S------ARTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHICYDVNDWQMLEMLKPCV 301

Query: 286 DEAFVIQEQNVALNFIGARGARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFL 345
           ++ FVIQ++  AL+FIG RG   G+ KE+RI+YA++ILQKE LPH+   +  E++KA+FL
Sbjct: 302 EDGFVIQDRETALDFIGRRGTALGIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFL 361

Query: 346 GYMVHRLLLASLGRRELDDRDHY--------------------------VRMYAQKFIDR 379
           GYM++RLLL +L R++ DDRDH+                          +  Y Q+ ++ 
Sbjct: 362 GYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFKKLTKDIFRYMQRTVEE 421

Query: 380 GKDFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRV 439
             DFN++LAI  K IT GL+Y+LATGNWG+QKKA  +RAGVSQVLNR T++S+LSHLRR 
Sbjct: 422 AHDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGVSQVLNRYTYSSTLSHLRRT 481

Query: 440 NSPIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFL 499
           N+PIGRDGKLAKPRQLHNT WG++CPAETPEG A GLVKNL+LM+ ISVG+ P PI+ FL
Sbjct: 482 NTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDPMPIITFL 541

Query: 500 EEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVSIIR 559
            EW ME LE+  P    DAT++FVNG W G+HR+P +LM TLR LRR+ DI   EVS+IR
Sbjct: 542 SEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMETLRTLRRKGDINP-EVSMIR 600

Query: 560 DIRDREIRIHTDAGRICRPLLIAEN------GSLLLKKRHIDNLKERDYNN--------- 604
           DIR++E++I TDAGR+ RPL I E+        L ++K HI  L   +Y +         
Sbjct: 601 DIREKELKIFTDAGRVYRPLFIVEDDESLGHKELKVRKGHIAKLMATEYQDIEGGFEDVE 660

Query: 605 -YGWQVLVQSGVVEYIDTLEEETTMIAM 631
            Y W  L+  G+VEYID  EEE+ +IAM
Sbjct: 661 EYTWSSLLNEGLVEYIDAEEEESILIAM 688


>d1smyc_ e.29.1.1 (C:) RNA-polymerase beta {Thermus thermophilus
           [TaxId: 274]}
          Length = 1119

 Score =  252 bits (645), Expect = 8e-73
 Identities = 104/638 (16%), Positives = 202/638 (31%), Gaps = 135/638 (21%)

Query: 10  INAYFDEKGLVRQQLDSFDEFIQMSVQRIV-EDSPQIDLQAEAQHTSTEVETPPRYLLKF 68
           I        L   Q++S+   +Q  V     E+        E      E +     +L F
Sbjct: 9   IREVIPLPPLTEIQVESYRRALQADVPPEKRENVGIQAAFRETFPIEEEDKGKGGLVLDF 68

Query: 69  EQIYLSKPTHWEKDGSPSPMMPNEARLRNLTYSAPLYVDITKTVVRQGEEPVTTQHQKSF 128
            +  L +P              +E R ++LTY APLY  +       G      +  + F
Sbjct: 69  LEYRLGEPPF----------PQDECREKDLTYQAPLYARLQLIHKDTGL----IKEDEVF 114

Query: 129 IGKIPIMLRSTYCLLNGLTDRDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVF 188
           +G IP+M                           G FIING+++V+++Q   +    +  
Sbjct: 115 LGHIPLMTED------------------------GSFIINGADRVIVSQIHRSPGVYFTP 150

Query: 189 SMKDSKYAYKTEIRSCLEHSSRPTSTLWVNMMARGGQSLKKSAIGQRIIAILPYIKQEIP 248
                   Y   I         P    W+++            +    +  +   K++ P
Sbjct: 151 D-PARPGRYIASIIPL------PKRGPWIDLE-----------VEPNGVVSMKVNKRKFP 192

Query: 249 IMIVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA-FVIQEQNVALNFIGARGAR 307
           ++++ R LG+  +    E   Y        E+V+  +DE+ F ++ +   +         
Sbjct: 193 LVLLLRVLGYDQETLARELGAYG-------ELVQGLMDESVFAMRPEEALIRLFTLLRPG 245

Query: 308 PGVTKERRIKYAREILQKEMLPHVGVS---------------------DFCETKKAYFLG 346
               +++ + Y   ++       +G +                     +  E K   FL 
Sbjct: 246 DPPKRDKAVAYVYGLIADPRRYDLGEAGRYKAEEKLGIRLSGRTLARFEDGEFKDEVFLP 305

Query: 347 YMVHRLL-LASLGRRELDDRDHYVRMYA------------------------QKFIDRGK 381
            + +     A +   E+DD DH                              +  +    
Sbjct: 306 TLRYLFALTAGVPGHEVDDIDHLGNRRIRTVGELMTDQFRVGLARLARGVRERMLMGSED 365

Query: 382 DFNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASSLSHLRRVNS 441
                  + ++ +   +R   +                 SQ  +     SSL H RR+++
Sbjct: 366 SLTPAKLVNSRPLEAAIREFFSRSQL-------------SQFKDETNPLSSLRHKRRISA 412

Query: 442 ----PIGRDGKLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYI-SVGSQPSPIL 496
                + R+      R +H T +G ICP ETPEGA +GL+ +LA  A +  +G   +P  
Sbjct: 413 LGPGGLTRERAGFDVRDVHRTHYGRICPVETPEGANIGLITSLAAYARVDELGFIRTPYR 472

Query: 497 EFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMGTLRKLRRQMDIIVSEVS 556
             +     + +  +  +     T    N    G     E+++       R+    V    
Sbjct: 473 RVVGGVVTDEVVYMTATEEDRYTIAQANTPLEGNRIAAERVV------ARRKGEPVIVSP 526

Query: 557 IIRDIRDREIRIHTDAGRICRPLLIAENGSLLLKKRHI 594
              +  D   +          P L  ++ +  L   ++
Sbjct: 527 EEVEFMDVSPKQVFSVNTNLIPFLEHDDANRALMGSNM 564


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.136    0.401 

Gapped
Lambda     K      H
   0.267   0.0624    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,514,422
Number of extensions: 123017
Number of successful extensions: 283
Number of sequences better than 10.0: 1
Number of HSP's gapped: 270
Number of HSP's successfully gapped: 5
Length of query: 661
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 570
Effective length of database: 1,158,166
Effective search space: 660154620
Effective search space used: 660154620
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.6 bits)