BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy7583
         (451 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|324120652|dbj|BAJ78717.1| RNA polymerase II second largest subunit [Bemisia tabaci]
          Length = 1176

 Score =  791 bits (2042), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/487 (80%), Positives = 403/487 (82%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITN+HVRMDTLAHVLYYPHKPLVTTR                              
Sbjct: 734  MGVYITNYHVRMDTLAHVLYYPHKPLVTTR------------------------------ 763

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERG+FR
Sbjct: 764  ---------------SMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFR 808

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVFFRSYKD+ESKRIGDQEEQFEKPNR TCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI
Sbjct: 809  SVFFRSYKDSESKRIGDQEEQFEKPNRSTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 868

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKTITLPEN+DELEGTTKR+SKRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVR
Sbjct: 869  GKTITLPENDDELEGTTKRYSKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVR 928

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 929  IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLAPDIIINPHAIPSRMTIGHLIECLQG 988

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVM+NGH+GRKINAQVFLGPTY
Sbjct: 989  KVSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMYNGHSGRKINAQVFLGPTY 1048

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL
Sbjct: 1049 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 1108

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FEVSDPYRIHVCN+CGLIAIAN+RNNTFECKGCKNKTQISQVRLPYAAKLLFQELM+MNI
Sbjct: 1109 FEVSDPYRIHVCNYCGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMAMNI 1168

Query: 445  APRLMVV 451
            APRLMVV
Sbjct: 1169 APRLMVV 1175


>gi|324120638|dbj|BAJ78710.1| RNA polymerase II second largest subunit [Tenodera aridifolia]
          Length = 1175

 Score =  791 bits (2042), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/487 (80%), Positives = 403/487 (82%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYPHKPLVTTR                              
Sbjct: 734  MGVYITNFHVRMDTLAHVLYYPHKPLVTTR------------------------------ 763

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAILCYTGYNQEDSVI+NASAVERG+FR
Sbjct: 764  ---------------SMEYLRFRELPAGINSIVAILCYTGYNQEDSVIMNASAVERGFFR 808

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVFFRSYKDAESKRIGDQEEQFEKP RQTCQGMRNA+YDKLDDDGII+PG+RVSGDDVVI
Sbjct: 809  SVFFRSYKDAESKRIGDQEEQFEKPTRQTCQGMRNALYDKLDDDGIISPGIRVSGDDVVI 868

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKTITLP+NEDELEGTTKRF+KRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVR
Sbjct: 869  GKTITLPDNEDELEGTTKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVR 928

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 929  IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECLQG 988

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVM+NGHTGRKINAQ+FLGPTY
Sbjct: 989  KVSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQIFLGPTY 1048

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQI+HGAAQFLRERL
Sbjct: 1049 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERL 1108

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FEVSDPYRIHVCNFCGLIAIAN+RNNTFECKGCKNKTQISQVRLPYAAKLLFQELM+MNI
Sbjct: 1109 FEVSDPYRIHVCNFCGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMAMNI 1168

Query: 445  APRLMVV 451
            APRLMVV
Sbjct: 1169 APRLMVV 1175


>gi|324120628|dbj|BAJ78705.1| RNA polymerase II second largest subunit [Teleogryllus emma]
          Length = 1174

 Score =  790 bits (2039), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/487 (79%), Positives = 403/487 (82%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYPHKPLVTTR                              
Sbjct: 733  MGVYITNFHVRMDTLAHVLYYPHKPLVTTR------------------------------ 762

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAILCYTGYNQEDSVI+NASAVERG+FR
Sbjct: 763  ---------------SMEYLRFRELPAGINSIVAILCYTGYNQEDSVIMNASAVERGFFR 807

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVFFRSYKDAESKRIGDQEEQFEKP RQTCQGMRNA+YDKLDDDGII+PG+RVSGDDVVI
Sbjct: 808  SVFFRSYKDAESKRIGDQEEQFEKPTRQTCQGMRNALYDKLDDDGIISPGIRVSGDDVVI 867

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKTITLP+NEDELEGTTKR++KRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVR
Sbjct: 868  GKTITLPDNEDELEGTTKRYTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVR 927

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 928  IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECLQG 987

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVM+NGHTGRKINAQ+FLGPTY
Sbjct: 988  KVSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQIFLGPTY 1047

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQI+HGAAQFLRERL
Sbjct: 1048 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERL 1107

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FEVSDPYRIHVCNFCGLIAIAN+RNNTFECKGCKNKTQISQVRLPYAAKLLFQELM+MNI
Sbjct: 1108 FEVSDPYRIHVCNFCGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMAMNI 1167

Query: 445  APRLMVV 451
            APRLMVV
Sbjct: 1168 APRLMVV 1174


>gi|324120650|dbj|BAJ78716.1| RNA polymerase II second largest subunit [Anacanthocoris striicornis]
          Length = 1175

 Score =  789 bits (2038), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/487 (80%), Positives = 401/487 (82%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYPHKPLVTTR                              
Sbjct: 734  MGVYITNFHVRMDTLAHVLYYPHKPLVTTR------------------------------ 763

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAI CYTGYNQEDSVILNASAVERG+FR
Sbjct: 764  ---------------SMEYLRFRELPAGINSIVAIACYTGYNQEDSVILNASAVERGFFR 808

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVFFRSYKDAESKR+GDQEEQFEKP RQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI
Sbjct: 809  SVFFRSYKDAESKRVGDQEEQFEKPMRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 868

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKTITLPEN+DELEGTTK+F+KRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVR
Sbjct: 869  GKTITLPENDDELEGTTKKFTKRDASTFLRNSETGIVDQVMLTLNAEGYKFCKIRVRSVR 928

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 929  IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLSPDIIINPHAIPSRMTIGHLIECLQG 988

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+NKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVM+NGHTGRKINAQ+FLGPTY
Sbjct: 989  KVSANKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQIFLGPTY 1048

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL
Sbjct: 1049 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 1108

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FEVSDPYRIHVCN CGLIAIAN+RNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI
Sbjct: 1109 FEVSDPYRIHVCNLCGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 1168

Query: 445  APRLMVV 451
            APRLMVV
Sbjct: 1169 APRLMVV 1175


>gi|324120632|dbj|BAJ78707.1| RNA polymerase II second largest subunit [Euborellia plebeja]
          Length = 1174

 Score =  788 bits (2036), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/487 (79%), Positives = 402/487 (82%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYPHKPLVTTR                              
Sbjct: 733  MGVYITNFHVRMDTLAHVLYYPHKPLVTTR------------------------------ 762

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAILCYTGYNQEDSVI+NASAVERG+FR
Sbjct: 763  ---------------SMEYLRFRELPAGINSIVAILCYTGYNQEDSVIMNASAVERGFFR 807

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVFFRSYKD+ESKRIGDQEEQFEKP RQTCQGMRNA+YDKLDDDGII+PGLRVSGDDVVI
Sbjct: 808  SVFFRSYKDSESKRIGDQEEQFEKPTRQTCQGMRNALYDKLDDDGIISPGLRVSGDDVVI 867

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKTITLPENEDEL+GTTKR++KRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVR
Sbjct: 868  GKTITLPENEDELDGTTKRYTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVR 927

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 928  IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECLQG 987

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVM+NGHTGRKINAQ+FLGPTY
Sbjct: 988  KVSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQIFLGPTY 1047

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQI+HGAAQFLRERL
Sbjct: 1048 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERL 1107

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FEVSDPYRIHVCN CGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI
Sbjct: 1108 FEVSDPYRIHVCNLCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 1167

Query: 445  APRLMVV 451
            APRLMV+
Sbjct: 1168 APRLMVI 1174


>gi|324120662|dbj|BAJ78722.1| RNA polymerase II second largest subunit [Protohermes grandis]
          Length = 1175

 Score =  788 bits (2035), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/487 (80%), Positives = 401/487 (82%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYPHKPLVTTR                              
Sbjct: 734  MGVYITNFHVRMDTLAHVLYYPHKPLVTTR------------------------------ 763

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERG+FR
Sbjct: 764  ---------------SMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFR 808

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSYKD+ESKRIGDQEEQFEKP RQTCQGMRNA YDKLDDDGII+PG+RVSGDDVVI
Sbjct: 809  SVFYRSYKDSESKRIGDQEEQFEKPTRQTCQGMRNAHYDKLDDDGIISPGIRVSGDDVVI 868

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKTITLPENEDELEGTTKRF+KRD STFLRNSETG+VDQVMLTLN +GYKFCKIRVRSVR
Sbjct: 869  GKTITLPENEDELEGTTKRFTKRDASTFLRNSETGVVDQVMLTLNSEGYKFCKIRVRSVR 928

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 929  IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECIQG 988

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VSSNKGEIGDATPFNDAVNVQKISTLLQEYGY LRGNEVM+NGHTGRKINAQ+FLGPTY
Sbjct: 989  KVSSNKGEIGDATPFNDAVNVQKISTLLQEYGYHLRGNEVMYNGHTGRKINAQIFLGPTY 1048

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL
Sbjct: 1049 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 1108

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FEVSDPYRIHVCNFCGLIAIAN+RNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI
Sbjct: 1109 FEVSDPYRIHVCNFCGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 1168

Query: 445  APRLMVV 451
            APRLMVV
Sbjct: 1169 APRLMVV 1175


>gi|324120626|dbj|BAJ78704.1| RNA polymerase II second largest subunit [Euconocephalus varius]
          Length = 1175

 Score =  788 bits (2035), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/487 (80%), Positives = 401/487 (82%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYPHKPLVTTR                              
Sbjct: 734  MGVYITNFHVRMDTLAHVLYYPHKPLVTTR------------------------------ 763

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERG+FR
Sbjct: 764  ---------------SMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFR 808

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVFFRSYKDAESKRIGDQEEQFEKP RQTCQGMRNA+YDKLDDDGII+PG+RVSGDDVVI
Sbjct: 809  SVFFRSYKDAESKRIGDQEEQFEKPTRQTCQGMRNALYDKLDDDGIISPGIRVSGDDVVI 868

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKTI LPE EDELEGTTKRF+KRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVR
Sbjct: 869  GKTIMLPETEDELEGTTKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVR 928

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 929  IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQG 988

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVM+NGHTGRKINAQVFLGPTY
Sbjct: 989  KVSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQVFLGPTY 1048

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQI+HGAAQFLRERL
Sbjct: 1049 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERL 1108

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FEVSDPYRIHVCNFCGLIAIAN+RNNTFECKGCKNKTQISQVRLPYAAKLLFQELM+MNI
Sbjct: 1109 FEVSDPYRIHVCNFCGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMAMNI 1168

Query: 445  APRLMVV 451
            APRLMV+
Sbjct: 1169 APRLMVM 1175


>gi|324120624|dbj|BAJ78703.1| RNA polymerase II second largest subunit [Nomadacris japonica]
          Length = 1173

 Score =  788 bits (2035), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/487 (79%), Positives = 403/487 (82%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYPHKPLVTTR                              
Sbjct: 732  MGVYITNFHVRMDTLAHVLYYPHKPLVTTR------------------------------ 761

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINS+VAILCYTGYNQEDSVI+NASAVERG+FR
Sbjct: 762  ---------------SMEYLRFRELPAGINSVVAILCYTGYNQEDSVIMNASAVERGFFR 806

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVFFRSYKDAESKRIGDQEEQFEKP RQTCQGMRNA+YDKLDDDGII+PG+RVSGDDVVI
Sbjct: 807  SVFFRSYKDAESKRIGDQEEQFEKPTRQTCQGMRNALYDKLDDDGIISPGIRVSGDDVVI 866

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKTITLP+NEDELEGTTKR++KRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVR
Sbjct: 867  GKTITLPDNEDELEGTTKRYTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVR 926

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 927  IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQG 986

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VSSNKGEIGDATPFNDAVNVQKIS+LLQEYGYQLRGNEVM+NGHTGRKINAQVFLGPTY
Sbjct: 987  KVSSNKGEIGDATPFNDAVNVQKISSLLQEYGYQLRGNEVMYNGHTGRKINAQVFLGPTY 1046

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQI+HGAAQFLRERL
Sbjct: 1047 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERL 1106

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FEVSDPYRIHVCNFCGLIAIAN+RNNTFECKGCKNKTQISQVRLPYAAKLLFQELM+MNI
Sbjct: 1107 FEVSDPYRIHVCNFCGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMAMNI 1166

Query: 445  APRLMVV 451
            APRLMV+
Sbjct: 1167 APRLMVI 1173


>gi|324120630|dbj|BAJ78706.1| RNA polymerase II second largest subunit [Oyamia lugubris]
          Length = 1175

 Score =  788 bits (2034), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/487 (79%), Positives = 401/487 (82%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYPHKPLVTTR                              
Sbjct: 734  MGVYITNFHVRMDTLAHVLYYPHKPLVTTR------------------------------ 763

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERG+FR
Sbjct: 764  ---------------SMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFR 808

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSYKDAESKRIGDQEEQFEKP R TCQGMRNA+YDKLDDDGIIAPG+RVSGDDVVI
Sbjct: 809  SVFYRSYKDAESKRIGDQEEQFEKPTRATCQGMRNALYDKLDDDGIIAPGIRVSGDDVVI 868

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKTITLP+NEDELEGTTKR++KRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVR
Sbjct: 869  GKTITLPDNEDELEGTTKRYTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVR 928

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 929  IPQIGDKFASRHGQKGTCGIQYRQEDMAFTAEGLTPDIIINPHAIPSRMTIGHLIECLQG 988

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+NKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVM+NGHTGRKINAQVFLGPTY
Sbjct: 989  KVSANKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQVFLGPTY 1048

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQI+HGAAQFLRERL
Sbjct: 1049 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERL 1108

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FEVSDPYRIHVCNFCGLIAIAN+RNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI
Sbjct: 1109 FEVSDPYRIHVCNFCGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 1168

Query: 445  APRLMVV 451
            APRLMV 
Sbjct: 1169 APRLMVT 1175


>gi|324120648|dbj|BAJ78715.1| RNA polymerase II second largest subunit [Cryptotympana facialis]
          Length = 1175

 Score =  787 bits (2033), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/487 (79%), Positives = 402/487 (82%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYPHKPLVTTR                              
Sbjct: 734  MGVYITNFHVRMDTLAHVLYYPHKPLVTTR------------------------------ 763

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAI CYTGYNQEDSVILNASAVERG+FR
Sbjct: 764  ---------------SMEYLRFRELPAGINSIVAIACYTGYNQEDSVILNASAVERGFFR 808

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVFFRSYKDAESKR+GDQEEQFEKP RQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI
Sbjct: 809  SVFFRSYKDAESKRVGDQEEQFEKPTRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 868

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT+TLP+NEDELEGTTKR++KRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVR
Sbjct: 869  GKTMTLPDNEDELEGTTKRYTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVR 928

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 929  IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGISPDIIINPHAIPSRMTIGHLIECLQG 988

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+NKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVM+NGHTGRKINAQ+F+GPTY
Sbjct: 989  KVSANKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQIFIGPTY 1048

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQI+HGAAQFLRERL
Sbjct: 1049 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERL 1108

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FEVSDPYRIHVCNFCGLIAIAN+RNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI
Sbjct: 1109 FEVSDPYRIHVCNFCGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 1168

Query: 445  APRLMVV 451
            APRLMV+
Sbjct: 1169 APRLMVI 1175


>gi|324120622|dbj|BAJ78702.1| RNA polymerase II second largest subunit [Karoophasma biedouwense]
          Length = 1176

 Score =  787 bits (2032), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/487 (79%), Positives = 402/487 (82%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYPHKPLVTTR                              
Sbjct: 734  MGVYITNFHVRMDTLAHVLYYPHKPLVTTR------------------------------ 763

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAILCYTGYNQEDSVI+NASAVERG+FR
Sbjct: 764  ---------------SMEYLRFRELPAGINSIVAILCYTGYNQEDSVIMNASAVERGFFR 808

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVFFRSYKDAESKRIGDQEEQFEKP RQTCQGMRNA+YDKLDDDGII+PG+RVSGDDVVI
Sbjct: 809  SVFFRSYKDAESKRIGDQEEQFEKPTRQTCQGMRNALYDKLDDDGIISPGIRVSGDDVVI 868

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKTITLPEN+DELEGTTKRF+KRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVR
Sbjct: 869  GKTITLPENDDELEGTTKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVR 928

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 929  IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECLQG 988

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+NKGEIGDATPFNDAVNVQKISTLLQEYGY LRGNEVM+NGHTGRKI+AQ+FLGPTY
Sbjct: 989  KVSANKGEIGDATPFNDAVNVQKISTLLQEYGYHLRGNEVMYNGHTGRKISAQIFLGPTY 1048

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQI+HGAAQFLRERL
Sbjct: 1049 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERL 1108

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FEVSDPYRIHVCNFCGLIAIAN+RNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI
Sbjct: 1109 FEVSDPYRIHVCNFCGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 1168

Query: 445  APRLMVV 451
            APRLMV+
Sbjct: 1169 APRLMVI 1175


>gi|357621065|gb|EHJ73034.1| hypothetical protein KGM_12615 [Danaus plexippus]
          Length = 1176

 Score =  787 bits (2032), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/487 (79%), Positives = 402/487 (82%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVL+YPHKPLVTTR                              
Sbjct: 734  MGVYITNFHVRMDTLAHVLFYPHKPLVTTR------------------------------ 763

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERG+FR
Sbjct: 764  ---------------SMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFR 808

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSYKD+ESKRIGDQEEQFEKP RQTCQGMRNA+YDKLDDDGIIAPG+RVSGDDVVI
Sbjct: 809  SVFYRSYKDSESKRIGDQEEQFEKPTRQTCQGMRNALYDKLDDDGIIAPGIRVSGDDVVI 868

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKTITLPEN+DELEGTTKRF+KRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVR
Sbjct: 869  GKTITLPENDDELEGTTKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVR 928

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 929  IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQG 988

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VSSNKGEIGDATPFNDAVNVQKIS+LLQEYGY LRGNEVM+NGHTGRKINAQVFLGPTY
Sbjct: 989  KVSSNKGEIGDATPFNDAVNVQKISSLLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTY 1048

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQI+HGAAQFLRERL
Sbjct: 1049 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERL 1108

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FEVSDPYRIHVCNFCGLIAIAN+RNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI
Sbjct: 1109 FEVSDPYRIHVCNFCGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 1168

Query: 445  APRLMVV 451
            APRLMVV
Sbjct: 1169 APRLMVV 1175


>gi|324120616|dbj|BAJ78699.1| RNA polymerase II second largest subunit [Phraortes illepidus]
          Length = 1150

 Score =  786 bits (2031), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/487 (79%), Positives = 402/487 (82%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITN+HVRMDTLAHVLYYPHKPLVTTR                              
Sbjct: 709  MGVYITNYHVRMDTLAHVLYYPHKPLVTTR------------------------------ 738

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINS+VAILCYTGYNQEDSVI+NASAVERG+FR
Sbjct: 739  ---------------SMEYLRFRELPAGINSVVAILCYTGYNQEDSVIMNASAVERGFFR 783

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVFFRSYKDAESKRIGDQEEQFEKP RQTCQGMRNA+YDKLDDDGIIAPG+RVSGDDVVI
Sbjct: 784  SVFFRSYKDAESKRIGDQEEQFEKPTRQTCQGMRNALYDKLDDDGIIAPGIRVSGDDVVI 843

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKTITLP+NEDELEGTTKRF+KRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVR
Sbjct: 844  GKTITLPDNEDELEGTTKRFTKRDASTFLRNSETGIVDQVMLTLNAEGYKFCKIRVRSVR 903

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 904  IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECLQG 963

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VSSNKGEIGDATPFNDAVNVQKIS LLQEYGYQLRGNEVM+NGHTGRKINAQ+FLGPTY
Sbjct: 964  KVSSNKGEIGDATPFNDAVNVQKISALLQEYGYQLRGNEVMYNGHTGRKINAQIFLGPTY 1023

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQILVRQPMEGR+RDGGLRFGEMERDCQI+HGAAQFLRERL
Sbjct: 1024 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERL 1083

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FEVSDPYRIHVCNFCGLIAIAN+RNNTFECKGCKNKTQISQVRLPYAAKLLFQELM+MNI
Sbjct: 1084 FEVSDPYRIHVCNFCGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMAMNI 1143

Query: 445  APRLMVV 451
            APRLMV+
Sbjct: 1144 APRLMVI 1150


>gi|324120670|dbj|BAJ78726.1| RNA polymerase II second largest subunit [Eretes sticticus]
          Length = 1174

 Score =  786 bits (2031), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/487 (79%), Positives = 403/487 (82%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYPHKPLVTTR                              
Sbjct: 733  MGVYITNFHVRMDTLAHVLYYPHKPLVTTR------------------------------ 762

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERG+FR
Sbjct: 763  ---------------SMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFR 807

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSYKDAESKR+GDQEEQFEKP RQTCQGMRNA+YDKLDDDGII+PG+RVSGDDVVI
Sbjct: 808  SVFYRSYKDAESKRLGDQEEQFEKPTRQTCQGMRNALYDKLDDDGIISPGIRVSGDDVVI 867

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKTITLPEN+DEL+GTTKR++KRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVR
Sbjct: 868  GKTITLPENDDELDGTTKRYTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVR 927

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 928  IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECIQG 987

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+NKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVM+NGHTGRKINAQ+FLGPTY
Sbjct: 988  KVSANKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQIFLGPTY 1047

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQI+HGAAQFLRERL
Sbjct: 1048 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERL 1107

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FEVSDPYRIHVCNFCGLIAIAN+RNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI
Sbjct: 1108 FEVSDPYRIHVCNFCGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 1167

Query: 445  APRLMVV 451
            APRLMVV
Sbjct: 1168 APRLMVV 1174


>gi|324120676|dbj|BAJ78729.1| RNA polymerase II second largest subunit [Stenopsyche marmorata]
          Length = 1174

 Score =  785 bits (2028), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/487 (79%), Positives = 401/487 (82%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYPHKPLVTTR                              
Sbjct: 732  MGVYITNFHVRMDTLAHVLYYPHKPLVTTR------------------------------ 761

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERG+FR
Sbjct: 762  ---------------SMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFR 806

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSYKD+ESKRIGDQEEQFEKP R TCQGMRNA+YDKLDDDGIIAPG+RVSGDDVVI
Sbjct: 807  SVFYRSYKDSESKRIGDQEEQFEKPTRTTCQGMRNALYDKLDDDGIIAPGIRVSGDDVVI 866

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKTITLPEN+DEL+GTTKR++KRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVR
Sbjct: 867  GKTITLPENDDELDGTTKRYTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVR 926

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 927  IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECIQG 986

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VSSNKGEIGDATPFNDAVNVQKISTLLQEYGY LRGNEVM+NGHTGRKINAQVFLGPTY
Sbjct: 987  KVSSNKGEIGDATPFNDAVNVQKISTLLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTY 1046

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQI+HGAAQFLRERL
Sbjct: 1047 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERL 1106

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FEVSDPYRIHVCNFCGLIAIAN+RNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI
Sbjct: 1107 FEVSDPYRIHVCNFCGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 1166

Query: 445  APRLMVV 451
            APRLMVV
Sbjct: 1167 APRLMVV 1173


>gi|324120640|dbj|BAJ78711.1| RNA polymerase II second largest subunit [Blattella nipponica]
          Length = 1175

 Score =  785 bits (2028), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/487 (79%), Positives = 402/487 (82%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYPHKPLVTTR                              
Sbjct: 734  MGVYITNFHVRMDTLAHVLYYPHKPLVTTR------------------------------ 763

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAILCYTGYNQEDSVI+NASAVERG+FR
Sbjct: 764  ---------------SMEYLRFRELPAGINSIVAILCYTGYNQEDSVIMNASAVERGFFR 808

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVFFRSYKDAESKRIGDQEEQFEKP RQTCQGMRNA+YDKLDDDGII+PG+RVSGDDVVI
Sbjct: 809  SVFFRSYKDAESKRIGDQEEQFEKPTRQTCQGMRNALYDKLDDDGIISPGIRVSGDDVVI 868

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKTITLP+N+DELEGTTKRF+KRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVR
Sbjct: 869  GKTITLPDNDDELEGTTKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVR 928

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 929  IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECLQG 988

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVM+NGHTGRKINAQ+FLGPTY
Sbjct: 989  KVSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQIFLGPTY 1048

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQI+HGAAQFLRERL
Sbjct: 1049 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERL 1108

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FEVSDPY IHVCNFCGLIAIAN+RNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSM+I
Sbjct: 1109 FEVSDPYAIHVCNFCGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMSI 1168

Query: 445  APRLMVV 451
            APRLMV+
Sbjct: 1169 APRLMVI 1175


>gi|324120618|dbj|BAJ78700.1| RNA polymerase II second largest subunit [Aposthonia japonica]
          Length = 1150

 Score =  785 bits (2027), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/487 (79%), Positives = 403/487 (82%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYPHKPLVTTR                              
Sbjct: 709  MGVYITNFHVRMDTLAHVLYYPHKPLVTTR------------------------------ 738

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINS+VAILCYTGYNQEDSVI+NASAVERG+FR
Sbjct: 739  ---------------SMEYLRFRELPAGINSVVAILCYTGYNQEDSVIMNASAVERGFFR 783

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVFFRSYKDAESKRIGDQEEQFEKP RQTCQGMRNA+YDKLDDDGII+PG+RVSGDDVVI
Sbjct: 784  SVFFRSYKDAESKRIGDQEEQFEKPTRQTCQGMRNALYDKLDDDGIISPGIRVSGDDVVI 843

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKTITLP+NEDELEG+TKRF+KRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVR
Sbjct: 844  GKTITLPDNEDELEGSTKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVR 903

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 904  IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECLQG 963

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+NKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVM+NGHTGRKINAQ+FLGPTY
Sbjct: 964  KVSANKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQIFLGPTY 1023

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGP+QILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL
Sbjct: 1024 YQRLKHMVDDKIHSRARGPLQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 1083

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FEVSDPYRIHVCNFCGLIAIAN+R+NTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI
Sbjct: 1084 FEVSDPYRIHVCNFCGLIAIANLRSNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 1143

Query: 445  APRLMVV 451
            APRLMV+
Sbjct: 1144 APRLMVL 1150


>gi|324120660|dbj|BAJ78721.1| RNA polymerase II second largest subunit [Vespa analis insularis]
          Length = 1175

 Score =  785 bits (2027), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/487 (79%), Positives = 400/487 (82%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYPHKPLVTTR                              
Sbjct: 734  MGVYITNFHVRMDTLAHVLYYPHKPLVTTR------------------------------ 763

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERG+FR
Sbjct: 764  ---------------SMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFR 808

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSYKD+ESKRIGDQEEQFEKP RQTCQGMRNAIYDKLDDDGIIAPG+RVSGDDVVI
Sbjct: 809  SVFYRSYKDSESKRIGDQEEQFEKPTRQTCQGMRNAIYDKLDDDGIIAPGIRVSGDDVVI 868

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKTITLPE +DEL+ TTKRF+KRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVR
Sbjct: 869  GKTITLPETDDELDSTTKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVR 928

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 929  IPQIGDKFASRHGQKGTCGIQYRQEDMPFSCEGLTPDIIINPHAIPSRMTIGHLIECIQG 988

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+NKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVM+NGHTGRKINAQVFLGPTY
Sbjct: 989  KVSANKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQVFLGPTY 1048

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL
Sbjct: 1049 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 1108

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FEVSDPYRIH+CNFCGLIAIAN+RNNTFECKGCKNKTQISQVRLPYAAKLLFQELM+MNI
Sbjct: 1109 FEVSDPYRIHICNFCGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMAMNI 1168

Query: 445  APRLMVV 451
            APRLMV 
Sbjct: 1169 APRLMVA 1175


>gi|328777078|ref|XP_003249277.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
            subunit RPB2 [Apis mellifera]
          Length = 1154

 Score =  785 bits (2026), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/487 (79%), Positives = 400/487 (82%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYPHKPLVTTR                              
Sbjct: 713  MGVYITNFHVRMDTLAHVLYYPHKPLVTTR------------------------------ 742

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERG+FR
Sbjct: 743  ---------------SMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFR 787

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSYKD+ESKRIGDQEEQFEKP RQTCQGMRNAIYDKLDDDGIIAPG+RVSGDDVVI
Sbjct: 788  SVFYRSYKDSESKRIGDQEEQFEKPTRQTCQGMRNAIYDKLDDDGIIAPGIRVSGDDVVI 847

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKTITLPE +DEL+ TTKRF+KRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVR
Sbjct: 848  GKTITLPEADDELDSTTKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVR 907

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 908  IPQIGDKFASRHGQKGTCGIQYRQEDMPFSCEGLTPDIIINPHAIPSRMTIGHLIECIQG 967

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+NKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVM+NGHTGRKINAQVFLGPTY
Sbjct: 968  KVSANKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQVFLGPTY 1027

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL
Sbjct: 1028 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 1087

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FEVSDPYRIH+CNFCGLIAIAN+RNNTFECKGCKNKTQISQ+RLPYAAKLLFQELM+MNI
Sbjct: 1088 FEVSDPYRIHICNFCGLIAIANLRNNTFECKGCKNKTQISQIRLPYAAKLLFQELMAMNI 1147

Query: 445  APRLMVV 451
            APRLMV 
Sbjct: 1148 APRLMVA 1154


>gi|324120636|dbj|BAJ78709.1| RNA polymerase II second largest subunit [Zorotypus sp. 154-1]
          Length = 1173

 Score =  785 bits (2026), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/487 (79%), Positives = 401/487 (82%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYPHKPLVTTR                              
Sbjct: 732  MGVYITNFHVRMDTLAHVLYYPHKPLVTTR------------------------------ 761

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERG+FR
Sbjct: 762  ---------------SMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFR 806

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNA+YDKLDDDGII+PG+RVSGDDVVI
Sbjct: 807  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNALYDKLDDDGIISPGIRVSGDDVVI 866

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT+TL E +DELEGTTKRF+KRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVR
Sbjct: 867  GKTMTLHETDDELEGTTKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVR 926

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 927  IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECLQG 986

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVM+NGHTGRKINAQ+FLGPTY
Sbjct: 987  KVSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQIFLGPTY 1046

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL
Sbjct: 1047 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 1106

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FEVSDPYRIHVCNFCGLIAIAN+RNNTFECKGCKNKTQISQ+RLPYAAKLLFQELM+MNI
Sbjct: 1107 FEVSDPYRIHVCNFCGLIAIANLRNNTFECKGCKNKTQISQIRLPYAAKLLFQELMAMNI 1166

Query: 445  APRLMVV 451
            APRLMV 
Sbjct: 1167 APRLMVT 1173


>gi|383851705|ref|XP_003701372.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
            [Megachile rotundata]
          Length = 1175

 Score =  784 bits (2025), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/487 (79%), Positives = 400/487 (82%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYPHKPLVTTR                              
Sbjct: 734  MGVYITNFHVRMDTLAHVLYYPHKPLVTTR------------------------------ 763

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERG+FR
Sbjct: 764  ---------------SMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFR 808

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSYKD+ESKRIGDQEEQFEKP RQTCQGMRNAIYDKLDDDGIIAPG+RVSGDDVVI
Sbjct: 809  SVFYRSYKDSESKRIGDQEEQFEKPTRQTCQGMRNAIYDKLDDDGIIAPGIRVSGDDVVI 868

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKTITLPE +DEL+ TTKRF+KRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVR
Sbjct: 869  GKTITLPEADDELDSTTKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVR 928

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 929  IPQIGDKFASRHGQKGTCGIQYRQEDMPFSCEGLTPDIIINPHAIPSRMTIGHLIECIQG 988

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+NKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVM+NGHTGRKINAQVFLGPTY
Sbjct: 989  KVSANKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQVFLGPTY 1048

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL
Sbjct: 1049 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 1108

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FEVSDPYRIH+CNFCGLIAIAN+RNNTFECKGCKNKTQISQVRLPYAAKLLFQELM+MNI
Sbjct: 1109 FEVSDPYRIHICNFCGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMAMNI 1168

Query: 445  APRLMVV 451
            APRLMV 
Sbjct: 1169 APRLMVA 1175


>gi|340726257|ref|XP_003401477.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Bombus
            terrestris]
 gi|350425904|ref|XP_003494269.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Bombus
            impatiens]
          Length = 1175

 Score =  784 bits (2025), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/487 (79%), Positives = 400/487 (82%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYPHKPLVTTR                              
Sbjct: 734  MGVYITNFHVRMDTLAHVLYYPHKPLVTTR------------------------------ 763

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERG+FR
Sbjct: 764  ---------------SMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFR 808

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSYKD+ESKRIGDQEEQFEKP RQTCQGMRNAIYDKLDDDGIIAPG+RVSGDDVVI
Sbjct: 809  SVFYRSYKDSESKRIGDQEEQFEKPTRQTCQGMRNAIYDKLDDDGIIAPGIRVSGDDVVI 868

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKTITLPE +DEL+ TTKRF+KRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVR
Sbjct: 869  GKTITLPEADDELDSTTKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVR 928

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 929  IPQIGDKFASRHGQKGTCGIQYRQEDMPFSCEGLTPDIIINPHAIPSRMTIGHLIECIQG 988

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+NKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVM+NGHTGRKINAQVFLGPTY
Sbjct: 989  KVSANKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQVFLGPTY 1048

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL
Sbjct: 1049 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 1108

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FEVSDPYRIH+CNFCGLIAIAN+RNNTFECKGCKNKTQISQ+RLPYAAKLLFQELM+MNI
Sbjct: 1109 FEVSDPYRIHICNFCGLIAIANLRNNTFECKGCKNKTQISQIRLPYAAKLLFQELMAMNI 1168

Query: 445  APRLMVV 451
            APRLMV 
Sbjct: 1169 APRLMVA 1175


>gi|380024797|ref|XP_003696177.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
            subunit RPB2-like [Apis florea]
          Length = 1175

 Score =  784 bits (2025), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/487 (79%), Positives = 400/487 (82%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYPHKPLVTTR                              
Sbjct: 734  MGVYITNFHVRMDTLAHVLYYPHKPLVTTR------------------------------ 763

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERG+FR
Sbjct: 764  ---------------SMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFR 808

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSYKD+ESKRIGDQEEQFEKP RQTCQGMRNAIYDKLDDDGIIAPG+RVSGDDVVI
Sbjct: 809  SVFYRSYKDSESKRIGDQEEQFEKPTRQTCQGMRNAIYDKLDDDGIIAPGIRVSGDDVVI 868

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKTITLPE +DEL+ TTKRF+KRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVR
Sbjct: 869  GKTITLPEADDELDSTTKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVR 928

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 929  IPQIGDKFASRHGQKGTCGIQYRQEDMPFSCEGLTPDIIINPHAIPSRMTIGHLIECIQG 988

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+NKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVM+NGHTGRKINAQVFLGPTY
Sbjct: 989  KVSANKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQVFLGPTY 1048

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL
Sbjct: 1049 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 1108

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FEVSDPYRIH+CNFCGLIAIAN+RNNTFECKGCKNKTQISQ+RLPYAAKLLFQELM+MNI
Sbjct: 1109 FEVSDPYRIHICNFCGLIAIANLRNNTFECKGCKNKTQISQIRLPYAAKLLFQELMAMNI 1168

Query: 445  APRLMVV 451
            APRLMV 
Sbjct: 1169 APRLMVA 1175


>gi|324120610|dbj|BAJ78696.1| RNA polymerase II second largest subunit [Mnais pruinosa pruinosa]
          Length = 1175

 Score =  784 bits (2024), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/487 (79%), Positives = 400/487 (82%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYPHKPLVTTR                              
Sbjct: 734  MGVYITNFHVRMDTLAHVLYYPHKPLVTTR------------------------------ 763

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINS+VAI CYTGYNQEDSVI+NASAVERG+FR
Sbjct: 764  ---------------SMEYLRFRELPAGINSVVAIACYTGYNQEDSVIMNASAVERGFFR 808

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSYKD ESKR+GDQEEQFEKP R TCQGMRNAIYDKLDDDGIIAPG+RVSGDDVVI
Sbjct: 809  SVFYRSYKDQESKRVGDQEEQFEKPTRATCQGMRNAIYDKLDDDGIIAPGVRVSGDDVVI 868

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKTITLPEN+DELEGTTKRF+KRD STFLRNSETGIVDQVM+TLN +GYKFCKIRVRSVR
Sbjct: 869  GKTITLPENDDELEGTTKRFTKRDASTFLRNSETGIVDQVMITLNSEGYKFCKIRVRSVR 928

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 929  IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECLQG 988

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VSSNKGEIGDATPFNDAVNVQKIS+LLQEYGYQLRGNEVMFNGHTGRKINAQ+FLGPTY
Sbjct: 989  KVSSNKGEIGDATPFNDAVNVQKISSLLQEYGYQLRGNEVMFNGHTGRKINAQIFLGPTY 1048

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQI+HGAAQFLRERL
Sbjct: 1049 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERL 1108

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FEVSDPYRIHVCNFCGLIAIAN+RNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI
Sbjct: 1109 FEVSDPYRIHVCNFCGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 1168

Query: 445  APRLMVV 451
            APRLMVV
Sbjct: 1169 APRLMVV 1175


>gi|324120642|dbj|BAJ78712.1| RNA polymerase II second largest subunit [Reticulitermes speratus]
          Length = 1150

 Score =  784 bits (2024), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/487 (79%), Positives = 401/487 (82%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYPHKPLVTTR                              
Sbjct: 709  MGVYITNFHVRMDTLAHVLYYPHKPLVTTR------------------------------ 738

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAILCYTGYNQEDSVI+NASAVERG+FR
Sbjct: 739  ---------------SMEYLRFRELPAGINSIVAILCYTGYNQEDSVIMNASAVERGFFR 783

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVFFR+YKDAESKRIGDQEEQFEKP R TCQGMRNA+YDKLDDDGII+PG+RVSGDDVVI
Sbjct: 784  SVFFRAYKDAESKRIGDQEEQFEKPTRTTCQGMRNALYDKLDDDGIISPGIRVSGDDVVI 843

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKTITLP+ EDELEGTTKRF+KRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVR
Sbjct: 844  GKTITLPDTEDELEGTTKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVR 903

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 904  IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECLQG 963

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVM+NGHTGRKINAQ+FLGPTY
Sbjct: 964  KVSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQIFLGPTY 1023

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQI+HGAAQFLRERL
Sbjct: 1024 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERL 1083

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FEVSDPYRIHVCNFCGLIAIAN+RNNTFECKGCKNKTQISQVRLPYAAKLLFQELM+MNI
Sbjct: 1084 FEVSDPYRIHVCNFCGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMAMNI 1143

Query: 445  APRLMVV 451
            APRLMVV
Sbjct: 1144 APRLMVV 1150


>gi|91090964|ref|XP_974653.1| PREDICTED: similar to AGAP003648-PA [Tribolium castaneum]
 gi|270013197|gb|EFA09645.1| hypothetical protein TcasGA2_TC011771 [Tribolium castaneum]
          Length = 1175

 Score =  784 bits (2024), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/487 (79%), Positives = 401/487 (82%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYPHKPLVTTR                              
Sbjct: 734  MGVYITNFHVRMDTLAHVLYYPHKPLVTTR------------------------------ 763

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAI CYTGYNQEDSVILNASAVERG+FR
Sbjct: 764  ---------------SMEYLRFRELPAGINSIVAIACYTGYNQEDSVILNASAVERGFFR 808

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSYKDAESKRIGDQEEQFEKP RQTCQGMRNA+YDKLDDDGIIAPG+RVSGDDVVI
Sbjct: 809  SVFYRSYKDAESKRIGDQEEQFEKPTRQTCQGMRNALYDKLDDDGIIAPGIRVSGDDVVI 868

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT+TLPEN+DEL+GTTKRF+KRD STFLRNSETG+VDQVMLTLN +GYKFCKIRVRSVR
Sbjct: 869  GKTMTLPENDDELDGTTKRFTKRDASTFLRNSETGVVDQVMLTLNSEGYKFCKIRVRSVR 928

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 929  IPQIGDKFASRHGQKGTCGIQYRQEDMIFTCEGLTPDIIINPHAIPSRMTIGHLIECIQG 988

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+NKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVM+NGHTGRKINAQ+FLGPTY
Sbjct: 989  KVSANKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQIFLGPTY 1048

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL
Sbjct: 1049 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 1108

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FEVSD YRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI
Sbjct: 1109 FEVSDQYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 1168

Query: 445  APRLMVV 451
            APRLMV+
Sbjct: 1169 APRLMVL 1175


>gi|324120674|dbj|BAJ78728.1| RNA polymerase II second largest subunit [Papilio polytes]
          Length = 1176

 Score =  783 bits (2023), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/487 (79%), Positives = 402/487 (82%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYPHKPLVTTR                              
Sbjct: 734  MGVYITNFHVRMDTLAHVLYYPHKPLVTTR------------------------------ 763

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERG+FR
Sbjct: 764  ---------------SMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFR 808

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSYKD+ESKR+GDQEEQFEKP RQTCQGMRNA+YDKLDDDGIIAPG+RVSGDDVVI
Sbjct: 809  SVFYRSYKDSESKRLGDQEEQFEKPTRQTCQGMRNALYDKLDDDGIIAPGIRVSGDDVVI 868

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKTITLPEN+DELEGTT+R++KRD STFLRNSETGIVDQVM+TLN +GYKFCKIRVRSVR
Sbjct: 869  GKTITLPENDDELEGTTRRYTKRDASTFLRNSETGIVDQVMVTLNREGYKFCKIRVRSVR 928

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 929  IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQG 988

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VSSNKGEIGDATPFNDAVNVQKIS+LLQEYGY LRGNEVM+NGHTGRKINAQVFLGPTY
Sbjct: 989  KVSSNKGEIGDATPFNDAVNVQKISSLLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTY 1048

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQI+HGAAQFLRERL
Sbjct: 1049 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERL 1108

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FEVSDPYRIHVCNFCGLIAIAN+RNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI
Sbjct: 1109 FEVSDPYRIHVCNFCGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 1168

Query: 445  APRLMVV 451
            APRLMVV
Sbjct: 1169 APRLMVV 1175


>gi|324120664|dbj|BAJ78723.1| RNA polymerase II second largest subunit [Inocellia japonica]
          Length = 1175

 Score =  783 bits (2023), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/487 (79%), Positives = 401/487 (82%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYPHKPLVTTR                              
Sbjct: 734  MGVYITNFHVRMDTLAHVLYYPHKPLVTTR------------------------------ 763

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERG+FR
Sbjct: 764  ---------------SMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFR 808

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSYKD+ESKRIGDQEEQFEKP RQTCQGMRNA YDKLDDDGII+PG+RVSGDDVVI
Sbjct: 809  SVFYRSYKDSESKRIGDQEEQFEKPTRQTCQGMRNAHYDKLDDDGIISPGIRVSGDDVVI 868

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKTI LPENEDELEGTTKR++KRD STFLRNSETG+VDQVMLTLN +GYKFCKIRVRSVR
Sbjct: 869  GKTIMLPENEDELEGTTKRYTKRDASTFLRNSETGVVDQVMLTLNSEGYKFCKIRVRSVR 928

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 929  IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECIQG 988

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVM+NGHTGRKINAQVFLGPTY
Sbjct: 989  KVSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQVFLGPTY 1048

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQI+HGAAQFLRERL
Sbjct: 1049 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERL 1108

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FEVSDPYRIHVCNFCGLIAIAN++NNTFECKGCKNKTQISQVRLPYAAKLLFQELM+MNI
Sbjct: 1109 FEVSDPYRIHVCNFCGLIAIANLKNNTFECKGCKNKTQISQVRLPYAAKLLFQELMAMNI 1168

Query: 445  APRLMVV 451
            APRLMV+
Sbjct: 1169 APRLMVI 1175


>gi|324120658|dbj|BAJ78720.1| RNA polymerase II second largest subunit [Neocolochelyna itoi]
          Length = 1175

 Score =  783 bits (2022), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/487 (79%), Positives = 400/487 (82%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYPHKPLVTTR                              
Sbjct: 734  MGVYITNFHVRMDTLAHVLYYPHKPLVTTR------------------------------ 763

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERG+FR
Sbjct: 764  ---------------SMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFR 808

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSYKD+ESKRIGDQEEQFEKP RQTCQGMRNAIYDKLDDDGIIAPG+RVSGDDVVI
Sbjct: 809  SVFYRSYKDSESKRIGDQEEQFEKPTRQTCQGMRNAIYDKLDDDGIIAPGIRVSGDDVVI 868

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKTITLPE +DEL+  TKRF+KRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVR
Sbjct: 869  GKTITLPETDDELDSATKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVR 928

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 929  IPQIGDKFASRHGQKGTCGIQYRQEDMPFSCEGLTPDIIINPHAIPSRMTIGHLIECIQG 988

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+NKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVM+NGHTGRKINAQVFLGPTY
Sbjct: 989  KVSANKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQVFLGPTY 1048

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL
Sbjct: 1049 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 1108

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FEVSDPYRIH+CNFCGLIAIAN+RNNTFECKGCKNKTQISQ+RLPYAAKLLFQELM+MNI
Sbjct: 1109 FEVSDPYRIHICNFCGLIAIANLRNNTFECKGCKNKTQISQIRLPYAAKLLFQELMAMNI 1168

Query: 445  APRLMVV 451
            APRLMV+
Sbjct: 1169 APRLMVI 1175


>gi|170042980|ref|XP_001849183.1| DNA-directed RNA polymerase II 140 kDa polypeptide [Culex
            quinquefasciatus]
 gi|167866385|gb|EDS29768.1| DNA-directed RNA polymerase II 140 kDa polypeptide [Culex
            quinquefasciatus]
          Length = 1176

 Score =  782 bits (2020), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/487 (79%), Positives = 401/487 (82%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYP KPLVTTR                              
Sbjct: 735  MGVYITNFHVRMDTLAHVLYYPMKPLVTTR------------------------------ 764

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERG+FR
Sbjct: 765  ---------------SMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFR 809

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSYKD+ESK+IGDQEEQFEKPNRQTCQGMRNA+YDKLDDDGIIAPGLRVSGDDVVI
Sbjct: 810  SVFYRSYKDSESKKIGDQEEQFEKPNRQTCQGMRNALYDKLDDDGIIAPGLRVSGDDVVI 869

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKTITLPE +D+L+GTTKR+SKRDGSTFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVR
Sbjct: 870  GKTITLPETDDDLDGTTKRYSKRDGSTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVR 929

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 930  IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECIQG 989

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             + SNKGEIGDATPFNDAVNVQKIST LQEYGYQLRGNEVM+NGHTGRKINAQVFLGPTY
Sbjct: 990  KLGSNKGEIGDATPFNDAVNVQKISTFLQEYGYQLRGNEVMYNGHTGRKINAQVFLGPTY 1049

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL
Sbjct: 1050 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 1109

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQV+LPYAAKLLFQELMSMNI
Sbjct: 1110 FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVKLPYAAKLLFQELMSMNI 1169

Query: 445  APRLMVV 451
            APRLMV+
Sbjct: 1170 APRLMVL 1176


>gi|324120620|dbj|BAJ78701.1| RNA polymerase II second largest subunit [Galloisiana yuasai]
          Length = 1175

 Score =  782 bits (2019), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/487 (78%), Positives = 401/487 (82%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYPHKPLVTTR                              
Sbjct: 734  MGVYITNFHVRMDTLAHVLYYPHKPLVTTR------------------------------ 763

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAILCYTGYNQEDSVI+NASAVERG+FR
Sbjct: 764  ---------------SMEYLRFRELPAGINSIVAILCYTGYNQEDSVIMNASAVERGFFR 808

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVFFRSYKDAESKRIGDQEEQFEKP R TCQGMRNA+YDKLDDDGII+PG+RVSGDDVVI
Sbjct: 809  SVFFRSYKDAESKRIGDQEEQFEKPTRLTCQGMRNALYDKLDDDGIISPGIRVSGDDVVI 868

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKTITLPEN+DELEG TKR++KRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVR
Sbjct: 869  GKTITLPENDDELEGATKRYTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVR 928

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 929  IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECLQG 988

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNE+MFNGHTGRKI+AQ+FLGPTY
Sbjct: 989  KVSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEIMFNGHTGRKISAQIFLGPTY 1048

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQI+HGAAQFLRERL
Sbjct: 1049 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERL 1108

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FEVSDPYRIH+CNFCG+IAIANMRNNTFECKGCKNKTQISQV+LPYAAKLLFQELM+MNI
Sbjct: 1109 FEVSDPYRIHICNFCGIIAIANMRNNTFECKGCKNKTQISQVKLPYAAKLLFQELMAMNI 1168

Query: 445  APRLMVV 451
            APRLMV+
Sbjct: 1169 APRLMVI 1175


>gi|324120634|dbj|BAJ78708.1| RNA polymerase II second largest subunit [Forficula hiromasai]
          Length = 1174

 Score =  782 bits (2019), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/487 (79%), Positives = 400/487 (82%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYPHKPLVTTR                              
Sbjct: 733  MGVYITNFHVRMDTLAHVLYYPHKPLVTTR------------------------------ 762

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAILCYTGYNQEDSVI+NASAVERG FR
Sbjct: 763  ---------------SMEYLRFRELPAGINSIVAILCYTGYNQEDSVIMNASAVERGLFR 807

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSYKD+ESKR GDQEEQFEKP RQTCQGMRNA+YDKLDDDGII+PGLRVSGDDVVI
Sbjct: 808  SVFYRSYKDSESKRNGDQEEQFEKPTRQTCQGMRNALYDKLDDDGIISPGLRVSGDDVVI 867

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKTITLPENEDEL+GTTKR++KRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVR
Sbjct: 868  GKTITLPENEDELDGTTKRYTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVR 927

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 928  IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECLQG 987

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVM+NGHTGRKINAQ+FLGPTY
Sbjct: 988  KVSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQIFLGPTY 1047

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQI+HGAAQFLRERL
Sbjct: 1048 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERL 1107

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FEVSDPYRIH+CN CGLIAIANMRNNTFECKGCKNKTQISQV+LPYAAKLLFQELMSMNI
Sbjct: 1108 FEVSDPYRIHICNLCGLIAIANMRNNTFECKGCKNKTQISQVKLPYAAKLLFQELMSMNI 1167

Query: 445  APRLMVV 451
            APRLMV+
Sbjct: 1168 APRLMVI 1174


>gi|324120608|dbj|BAJ78695.1| RNA polymerase II second largest subunit [Epiophlebia superstes]
          Length = 1175

 Score =  781 bits (2017), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/487 (78%), Positives = 400/487 (82%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYPHKPLVTTR                              
Sbjct: 734  MGVYITNFHVRMDTLAHVLYYPHKPLVTTR------------------------------ 763

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINS+VAI CYTGYNQEDSVI+NASAVERG+FR
Sbjct: 764  ---------------SMEYLRFRELPAGINSVVAIACYTGYNQEDSVIMNASAVERGFFR 808

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSYKD ESKR+GDQEEQFEKP R TCQGMRNAIYDKLDDDGIIAPG+RVSGDDVVI
Sbjct: 809  SVFYRSYKDQESKRVGDQEEQFEKPTRATCQGMRNAIYDKLDDDGIIAPGVRVSGDDVVI 868

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKTITLPEN+DELEGTTKRF+KRD STFLRNSETGIVDQVM+TLN +GYKFCKIRVRSVR
Sbjct: 869  GKTITLPENDDELEGTTKRFTKRDASTFLRNSETGIVDQVMITLNSEGYKFCKIRVRSVR 928

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 929  IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECLQG 988

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+NKGEIGDATPFNDAVNVQKIS+LLQEYGYQLRGNEVM+NGHTGRKINAQ+FLGPTY
Sbjct: 989  KVSANKGEIGDATPFNDAVNVQKISSLLQEYGYQLRGNEVMYNGHTGRKINAQIFLGPTY 1048

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQI+HGAAQFLRERL
Sbjct: 1049 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERL 1108

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FEVSDPYRIHVCNFCGLIAIAN+RNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI
Sbjct: 1109 FEVSDPYRIHVCNFCGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 1168

Query: 445  APRLMVV 451
            APRLMVV
Sbjct: 1169 APRLMVV 1175


>gi|324120606|dbj|BAJ78694.1| RNA polymerase II second largest subunit [Isolepisma japonica]
          Length = 1176

 Score =  781 bits (2016), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/487 (79%), Positives = 400/487 (82%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYPHKPLVTTR                              
Sbjct: 734  MGVYITNFHVRMDTLAHVLYYPHKPLVTTR------------------------------ 763

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAI CYTGYNQEDSVI+NASAVERG+FR
Sbjct: 764  ---------------SMEYLRFRELPAGINSIVAIACYTGYNQEDSVIMNASAVERGFFR 808

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVFFRSYKDAESKRI DQEEQFEKP R TCQGMRNAIYDKLDDDGIIAPG+RVSGDDVVI
Sbjct: 809  SVFFRSYKDAESKRICDQEEQFEKPTRTTCQGMRNAIYDKLDDDGIIAPGIRVSGDDVVI 868

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKTITLP+N+DELEGTTKR++KRD STFLRNSETGIVDQVM+TLN +GYKFCKIRVRSVR
Sbjct: 869  GKTITLPDNDDELEGTTKRYTKRDASTFLRNSETGIVDQVMITLNSEGYKFCKIRVRSVR 928

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 929  IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECLQG 988

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVM+NGHTGRKINAQ+FLGPTY
Sbjct: 989  KVSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQIFLGPTY 1048

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGP+QILVRQPMEGRARDGGLRFGEMERDCQI+HGAAQFLRERL
Sbjct: 1049 YQRLKHMVDDKIHSRARGPLQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERL 1108

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FEVSDPYRIHVCNFCGLIAIANMRN+TFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI
Sbjct: 1109 FEVSDPYRIHVCNFCGLIAIANMRNSTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 1168

Query: 445  APRLMVV 451
            APRLMVV
Sbjct: 1169 APRLMVV 1175


>gi|324120646|dbj|BAJ78714.1| RNA polymerase II second largest subunit [Gynaikothrips ficorum]
          Length = 1150

 Score =  781 bits (2016), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/487 (79%), Positives = 399/487 (81%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYPHKPLVTTR                              
Sbjct: 709  MGVYITNFHVRMDTLAHVLYYPHKPLVTTR------------------------------ 738

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNA+AVERG+FR
Sbjct: 739  ---------------SMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNATAVERGFFR 783

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSYKDAESKRIGDQEEQFEKPNR  CQGMRNA+YDKLDDDGIIAPGLRVSGDDVVI
Sbjct: 784  SVFYRSYKDAESKRIGDQEEQFEKPNRSNCQGMRNALYDKLDDDGIIAPGLRVSGDDVVI 843

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKTITLPE +DELEGTT+R +KRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVR
Sbjct: 844  GKTITLPETDDELEGTTRRHTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVR 903

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 904  IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECLQG 963

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVM+NGHTGRKINAQVFLGPTY
Sbjct: 964  KVSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQVFLGPTY 1023

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQI+HGAAQFLRERL
Sbjct: 1024 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERL 1083

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FEVSDPYRIHVCNFCGLIAIAN+RNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSM+I
Sbjct: 1084 FEVSDPYRIHVCNFCGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMSI 1143

Query: 445  APRLMVV 451
            APRLMV 
Sbjct: 1144 APRLMVT 1150


>gi|242009479|ref|XP_002425513.1| DNA-directed RNA polymerase II 135 kDa polypeptide, putative
            [Pediculus humanus corporis]
 gi|212509368|gb|EEB12775.1| DNA-directed RNA polymerase II 135 kDa polypeptide, putative
            [Pediculus humanus corporis]
          Length = 1175

 Score =  780 bits (2014), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/487 (78%), Positives = 401/487 (82%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITN+HVRMDTLAHVL+YPHKPLV TR                              
Sbjct: 734  MGVYITNYHVRMDTLAHVLFYPHKPLVITR------------------------------ 763

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR
Sbjct: 764  ---------------SMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 808

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSYKD+ESKRIGDQEEQFEKPNRQTCQGMRNA+YDKLDDDGIIAPG+RVSGDDV+I
Sbjct: 809  SVFYRSYKDSESKRIGDQEEQFEKPNRQTCQGMRNAMYDKLDDDGIIAPGVRVSGDDVII 868

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKTITLP+N+DELEG TKR++KRD STFLRNSETG VDQVM+TLN +GYKFCKIRVRSVR
Sbjct: 869  GKTITLPDNDDELEGATKRYTKRDASTFLRNSETGCVDQVMITLNSEGYKFCKIRVRSVR 928

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 929  IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECLQG 988

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNE+M+NGHTGRKINAQVFLGPTY
Sbjct: 989  KVSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNELMYNGHTGRKINAQVFLGPTY 1048

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL
Sbjct: 1049 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 1108

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FEVSDPYRIHVCNFCGLIAIAN+RNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI
Sbjct: 1109 FEVSDPYRIHVCNFCGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 1168

Query: 445  APRLMVV 451
            APRLMV+
Sbjct: 1169 APRLMVL 1175


>gi|324120600|dbj|BAJ78691.1| RNA polymerase II second largest subunit [Petrobiellus takunagae]
          Length = 1151

 Score =  780 bits (2013), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/487 (78%), Positives = 399/487 (81%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYP KPLVTTR                              
Sbjct: 709  MGVYITNFHVRMDTLAHVLYYPQKPLVTTR------------------------------ 738

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINS+VAI CYTGYNQEDSVI+NASAVERG+FR
Sbjct: 739  ---------------SMEYLRFRELPAGINSVVAIACYTGYNQEDSVIMNASAVERGFFR 783

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF R+YKD+ESKR+GDQEEQFEKP RQTCQGMRNAIYDKLDDDGIIAPG+RVSGDDV+I
Sbjct: 784  SVFMRAYKDSESKRVGDQEEQFEKPTRQTCQGMRNAIYDKLDDDGIIAPGIRVSGDDVII 843

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKTITLPEN+DELEGTTKR++KRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVR
Sbjct: 844  GKTITLPENDDELEGTTKRYTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVR 903

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 904  IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECLQG 963

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VSSNKGEIGDATPFNDAVNVQKIS LLQEYGYQLRGNEVMFNGH+GRKINAQVFLGPTY
Sbjct: 964  KVSSNKGEIGDATPFNDAVNVQKISALLQEYGYQLRGNEVMFNGHSGRKINAQVFLGPTY 1023

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQI+HGAAQFLRERL
Sbjct: 1024 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERL 1083

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FEVSDPYRIHVCNFCGLIAIAN+RNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI
Sbjct: 1084 FEVSDPYRIHVCNFCGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 1143

Query: 445  APRLMVV 451
            APRLMVV
Sbjct: 1144 APRLMVV 1150


>gi|403182531|gb|EJY57456.1| AAEL017213-PA [Aedes aegypti]
          Length = 1176

 Score =  780 bits (2013), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/487 (78%), Positives = 401/487 (82%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYP KPLVTTR                              
Sbjct: 735  MGVYITNFHVRMDTLAHVLYYPMKPLVTTR------------------------------ 764

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGIN+IVAILCYTGYNQEDSVILNASAVERG+FR
Sbjct: 765  ---------------SMEYLRFRELPAGINTIVAILCYTGYNQEDSVILNASAVERGFFR 809

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSYKD+ESK+IGDQEEQFEKPNRQTCQGMRNA+YDKLDDDGIIAPGLRVSGDDVVI
Sbjct: 810  SVFYRSYKDSESKKIGDQEEQFEKPNRQTCQGMRNALYDKLDDDGIIAPGLRVSGDDVVI 869

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKTITLPE +D+L+GTTKR++KRDGSTFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVR
Sbjct: 870  GKTITLPETDDDLDGTTKRYTKRDGSTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVR 929

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 930  IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECIQG 989

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             + SNKGEIGDATPFNDAVNVQKIST LQEYGYQLRGNEVM+NGHTGRKINAQVFLGPTY
Sbjct: 990  KLGSNKGEIGDATPFNDAVNVQKISTFLQEYGYQLRGNEVMYNGHTGRKINAQVFLGPTY 1049

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL
Sbjct: 1050 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 1109

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQV+LPYAAKLLFQELM+MNI
Sbjct: 1110 FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVKLPYAAKLLFQELMAMNI 1169

Query: 445  APRLMVV 451
            APRLMV+
Sbjct: 1170 APRLMVL 1176


>gi|307182559|gb|EFN69752.1| DNA-directed RNA polymerase II subunit RPB2 [Camponotus floridanus]
          Length = 1178

 Score =  779 bits (2012), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/486 (78%), Positives = 400/486 (82%), Gaps = 81/486 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYPHKPLVTTR                              
Sbjct: 737  MGVYITNFHVRMDTLAHVLYYPHKPLVTTR------------------------------ 766

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERG+FR
Sbjct: 767  ---------------SMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFR 811

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSYK+AESK+IGDQEEQFEKP+R TCQGMRNAIYDKLDDDGIIAPG+RVSGDDV+I
Sbjct: 812  SVFYRSYKEAESKKIGDQEEQFEKPSRLTCQGMRNAIYDKLDDDGIIAPGIRVSGDDVII 871

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKTITLPE +DEL+ TTKRF+KRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVR
Sbjct: 872  GKTITLPETDDELDSTTKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVR 931

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 932  IPQIGDKFASRHGQKGTCGIQYRQEDMPFSCEGLTPDIIINPHAIPSRMTIGHLIECIQG 991

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+NKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVM+NGHTGRKINAQVFLGPTY
Sbjct: 992  KVSANKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQVFLGPTY 1051

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL
Sbjct: 1052 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 1111

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FEVSDPYRIH+CNFCGLIAIAN+RNNTFECKGCKNKTQISQ+RLPYAAKLLFQELM+MNI
Sbjct: 1112 FEVSDPYRIHICNFCGLIAIANLRNNTFECKGCKNKTQISQIRLPYAAKLLFQELMAMNI 1171

Query: 445  APRLMV 450
            APRLM+
Sbjct: 1172 APRLMI 1177


>gi|324120598|dbj|BAJ78690.1| RNA polymerase II second largest subunit [Pedetontus unimaculatus]
          Length = 1176

 Score =  779 bits (2012), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/487 (78%), Positives = 399/487 (81%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYP KPLVTTR                              
Sbjct: 734  MGVYITNFHVRMDTLAHVLYYPQKPLVTTR------------------------------ 763

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINS+VAI CYTGYNQEDSVI+NASAVERG+FR
Sbjct: 764  ---------------SMEYLRFRELPAGINSVVAIACYTGYNQEDSVIMNASAVERGFFR 808

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF R+YKD+ESKR+GDQEEQFEKP RQTCQGMRNAIYDKLDDDGIIAPG+RVSGDDV+I
Sbjct: 809  SVFMRAYKDSESKRVGDQEEQFEKPTRQTCQGMRNAIYDKLDDDGIIAPGIRVSGDDVII 868

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKTITLPEN+DELEGTT+R++KRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVR
Sbjct: 869  GKTITLPENDDELEGTTRRYTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVR 928

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 929  IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECLQG 988

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VSSNKGEIGDATPFNDAVNVQKIS LLQEYGYQLRGNEVMFNGH+GRKINAQVFLGPTY
Sbjct: 989  KVSSNKGEIGDATPFNDAVNVQKISALLQEYGYQLRGNEVMFNGHSGRKINAQVFLGPTY 1048

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQI+HGAAQFLRERL
Sbjct: 1049 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERL 1108

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FEVSDPYRIHVCNFCGLIAIAN+RNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI
Sbjct: 1109 FEVSDPYRIHVCNFCGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 1168

Query: 445  APRLMVV 451
            APRLMVV
Sbjct: 1169 APRLMVV 1175


>gi|307208700|gb|EFN85990.1| DNA-directed RNA polymerase II subunit RPB2 [Harpegnathos saltator]
          Length = 1123

 Score =  778 bits (2010), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/487 (78%), Positives = 399/487 (81%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYPHKPLVTTR                              
Sbjct: 682  MGVYITNFHVRMDTLAHVLYYPHKPLVTTR------------------------------ 711

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERG+FR
Sbjct: 712  ---------------SMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFR 756

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSYK+AESK+IGDQEEQFEKP+R TCQGMRNAIYDKLDDDGIIAPG+RVSGDDV+I
Sbjct: 757  SVFYRSYKEAESKKIGDQEEQFEKPSRLTCQGMRNAIYDKLDDDGIIAPGIRVSGDDVII 816

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKTITLPE +DEL+ TTKRF+KRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVR
Sbjct: 817  GKTITLPETDDELDSTTKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVR 876

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 877  IPQIGDKFASRHGQKGTCGIQYRQEDMPFSCEGLTPDIIINPHAIPSRMTIGHLIECIQG 936

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+NKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVM+NGHTGRKINAQVFLGPTY
Sbjct: 937  KVSANKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQVFLGPTY 996

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL
Sbjct: 997  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 1056

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FEVSDPYRIH+CNFCGLIAIAN+RNNTFECKGCKNKTQISQ+RLPYAAKLLFQELM+MNI
Sbjct: 1057 FEVSDPYRIHICNFCGLIAIANLRNNTFECKGCKNKTQISQIRLPYAAKLLFQELMAMNI 1116

Query: 445  APRLMVV 451
            APRLM  
Sbjct: 1117 APRLMTT 1123


>gi|345495600|ref|XP_003427537.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
            subunit RPB2 [Nasonia vitripennis]
          Length = 1174

 Score =  778 bits (2009), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/487 (78%), Positives = 400/487 (82%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYPHKPLVTTR                              
Sbjct: 733  MGVYITNFHVRMDTLAHVLYYPHKPLVTTR------------------------------ 762

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERG+FR
Sbjct: 763  ---------------SMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFR 807

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSYKD+E+K+ GDQEEQFEKP+RQTCQGMRNA+YDKLDDDGIIAPG+RVSGDDVVI
Sbjct: 808  SVFYRSYKDSETKKFGDQEEQFEKPSRQTCQGMRNALYDKLDDDGIIAPGIRVSGDDVVI 867

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT+TLPEN+DEL+ TTKRF+KRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVR
Sbjct: 868  GKTMTLPENDDELDSTTKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVR 927

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 928  IPQIGDKFASRHGQKGTCGIQYRQEDMPFSCEGLTPDIIINPHAIPSRMTIGHLIECIQG 987

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+NKGEIGDATPFNDAVNVQKISTLL EYGYQLRGNE+M+NGHTGRKINAQVFLGPTY
Sbjct: 988  KVSANKGEIGDATPFNDAVNVQKISTLLCEYGYQLRGNEIMYNGHTGRKINAQVFLGPTY 1047

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL
Sbjct: 1048 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 1107

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FEVSDPYRIHVCNFCGLIAIAN+RNNTFECKGCKNKTQISQVRLPYAAKLLFQELM+MNI
Sbjct: 1108 FEVSDPYRIHVCNFCGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMAMNI 1167

Query: 445  APRLMVV 451
            APRLMV 
Sbjct: 1168 APRLMVT 1174


>gi|324120672|dbj|BAJ78727.1| RNA polymerase II second largest subunit [Lucidina biplagiata]
          Length = 1175

 Score =  778 bits (2009), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/487 (78%), Positives = 400/487 (82%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYPHKPLVTTR                              
Sbjct: 734  MGVYITNFHVRMDTLAHVLYYPHKPLVTTR------------------------------ 763

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAI CYTGYNQEDSVILNASAVERG+FR
Sbjct: 764  ---------------SMEYLRFRELPAGINSIVAIACYTGYNQEDSVILNASAVERGFFR 808

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSYKD+E KRIGDQEEQFEKP RQTCQGMRNA+YDKLDDDGII+PG+RVSGDDVVI
Sbjct: 809  SVFYRSYKDSECKRIGDQEEQFEKPTRQTCQGMRNALYDKLDDDGIISPGIRVSGDDVVI 868

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT+TLPEN+DEL+GTTK+FSKRD STFLRNSETG+VDQVMLTLN +GYKFCKIRVRSVR
Sbjct: 869  GKTMTLPENDDELDGTTKKFSKRDASTFLRNSETGVVDQVMLTLNSEGYKFCKIRVRSVR 928

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 929  IPQIGDKFASRHGQKGTCGIQYRQEDMIFTCEGITPDIIINPHAIPSRMTIGHLIECIQG 988

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+NKGEIGDATPFNDAVNVQKISTLLQEYGY LRGNEVM+NGHTGRKINAQ+FLGPTY
Sbjct: 989  KVSANKGEIGDATPFNDAVNVQKISTLLQEYGYHLRGNEVMYNGHTGRKINAQIFLGPTY 1048

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL
Sbjct: 1049 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 1108

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FEVSDPYRIH+CNFCGLIAIAN+RNNTFECKGCKNKTQISQ+RLPYAAKLLFQELMSMNI
Sbjct: 1109 FEVSDPYRIHICNFCGLIAIANLRNNTFECKGCKNKTQISQIRLPYAAKLLFQELMSMNI 1168

Query: 445  APRLMVV 451
            APRLMV+
Sbjct: 1169 APRLMVM 1175


>gi|324120666|dbj|BAJ78724.1| RNA polymerase II second largest subunit [Chrysoperla nipponensis]
          Length = 1175

 Score =  778 bits (2008), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/487 (78%), Positives = 400/487 (82%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYPHKPLVTTR                              
Sbjct: 734  MGVYITNFHVRMDTLAHVLYYPHKPLVTTR------------------------------ 763

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERG+FR
Sbjct: 764  ---------------SMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFR 808

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSYKD+ESKRIG+QEEQFEKP RQTC GMR+A+YDKLDDDGII+PG+RVSGDDVVI
Sbjct: 809  SVFYRSYKDSESKRIGEQEEQFEKPTRQTCSGMRHALYDKLDDDGIISPGVRVSGDDVVI 868

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT+TLPENEDELEGTTKR++KRD STFLRNSETG+VDQVMLTLN +GYKFCKIRVRSVR
Sbjct: 869  GKTMTLPENEDELEGTTKRYTKRDASTFLRNSETGVVDQVMLTLNSEGYKFCKIRVRSVR 928

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 929  IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECIQG 988

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVM+NGHTGRKINAQVF GPTY
Sbjct: 989  KVSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQVFFGPTY 1048

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGP+QILVRQP EGRARDGGLRFGEMERDCQISHGAAQFLRERL
Sbjct: 1049 YQRLKHMVDDKIHSRARGPLQILVRQPSEGRARDGGLRFGEMERDCQISHGAAQFLRERL 1108

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FEVSDPYRIHVCNFCGLIAIAN+RNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI
Sbjct: 1109 FEVSDPYRIHVCNFCGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 1168

Query: 445  APRLMVV 451
            APRLMV+
Sbjct: 1169 APRLMVI 1175


>gi|324120602|dbj|BAJ78692.1| RNA polymerase II second largest subunit [Nipponatelura sp. 66-1]
          Length = 1175

 Score =  778 bits (2008), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/487 (78%), Positives = 400/487 (82%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYPHKPLVTTR                              
Sbjct: 734  MGVYITNFHVRMDTLAHVLYYPHKPLVTTR------------------------------ 763

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINS+VAI CYTGYNQEDSVI+NASAVERG+FR
Sbjct: 764  ---------------SMEYLRFRELPAGINSVVAIACYTGYNQEDSVIMNASAVERGFFR 808

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVFFRSYKDAESK +GDQEEQFEKP+R TCQGMRNAIYDKLDDDGIIAPG+RVSGDDVVI
Sbjct: 809  SVFFRSYKDAESKGMGDQEEQFEKPSRTTCQGMRNAIYDKLDDDGIIAPGIRVSGDDVVI 868

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKTITLPEN+DELEGTTKR++KRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVR
Sbjct: 869  GKTITLPENDDELEGTTKRYTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVR 928

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 929  IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECLQG 988

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VSSNKGEIGDATPFNDAVNVQKISTLLQEYGY LRGNEVM+NGHTGRKINAQ+FLGPTY
Sbjct: 989  KVSSNKGEIGDATPFNDAVNVQKISTLLQEYGYHLRGNEVMYNGHTGRKINAQIFLGPTY 1048

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQI+HGAAQFLRERL
Sbjct: 1049 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERL 1108

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FEVSDPYR+HVCNFCG+IAIAN+RNNTFECKGCKNKTQISQ+RLPYAAKLLFQELMSMNI
Sbjct: 1109 FEVSDPYRVHVCNFCGIIAIANLRNNTFECKGCKNKTQISQIRLPYAAKLLFQELMSMNI 1168

Query: 445  APRLMVV 451
            APRLM++
Sbjct: 1169 APRLMIL 1175


>gi|347970296|ref|XP_313416.4| AGAP003648-PA [Anopheles gambiae str. PEST]
 gi|333468866|gb|EAA08858.4| AGAP003648-PA [Anopheles gambiae str. PEST]
          Length = 1175

 Score =  776 bits (2005), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/487 (78%), Positives = 400/487 (82%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYP KPLVTTR                              
Sbjct: 734  MGVYITNFHVRMDTLAHVLYYPMKPLVTTR------------------------------ 763

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERG+FR
Sbjct: 764  ---------------SMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFR 808

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSYKD+ESKRIGDQEEQFEKPNRQTCQGMRNA+YDKLD+DGIIAPGLRVSGDDVVI
Sbjct: 809  SVFYRSYKDSESKRIGDQEEQFEKPNRQTCQGMRNALYDKLDEDGIIAPGLRVSGDDVVI 868

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKTITLPE +D+L+GTTKR++KRDGSTFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVR
Sbjct: 869  GKTITLPETDDDLDGTTKRYTKRDGSTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVR 928

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 929  IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQG 988

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             + SNKGEIGDATPFNDAVNVQKIST LQEYGY LRGNEVM+NGHTGRKINAQVFLGPTY
Sbjct: 989  KLGSNKGEIGDATPFNDAVNVQKISTFLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTY 1048

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL
Sbjct: 1049 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 1108

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FEVSDPYRIHVCNFCGLIAIAN+RNNTFECKGCKNKTQISQV+LPYAAKLLFQELM+MNI
Sbjct: 1109 FEVSDPYRIHVCNFCGLIAIANLRNNTFECKGCKNKTQISQVKLPYAAKLLFQELMAMNI 1168

Query: 445  APRLMVV 451
            APRLMV+
Sbjct: 1169 APRLMVL 1175


>gi|324120680|dbj|BAJ78731.1| RNA polymerase II second largest subunit [Ctenocephalides felis]
          Length = 1175

 Score =  775 bits (2001), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/487 (78%), Positives = 400/487 (82%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYP KPLVTTR                              
Sbjct: 734  MGVYITNFHVRMDTLAHVLYYPMKPLVTTR------------------------------ 763

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERG+FR
Sbjct: 764  ---------------SMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFR 808

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSYKD+E+KR+GDQEEQFEKPNRQTCQGMRNA+YDKLD+DGIIAPG+RVSGDDV+I
Sbjct: 809  SVFYRSYKDSETKRMGDQEEQFEKPNRQTCQGMRNALYDKLDEDGIIAPGIRVSGDDVII 868

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKTITLPEN+DELEGTTKR +KRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVR
Sbjct: 869  GKTITLPENDDELEGTTKRHTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVR 928

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 929  IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLMPDIIINPHAIPSRMTIGHLIECIQG 988

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             + +NKGEIGDATPFNDAVNVQKISTLLQEYGY LRGNEVM+NGHTGRKINAQVFLGPTY
Sbjct: 989  KLGANKGEIGDATPFNDAVNVQKISTLLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTY 1048

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL
Sbjct: 1049 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 1108

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FEVSDPYRIHVCNFCGLIAIAN+R+NTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI
Sbjct: 1109 FEVSDPYRIHVCNFCGLIAIANLRSNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 1168

Query: 445  APRLMVV 451
            APRLMV+
Sbjct: 1169 APRLMVL 1175


>gi|324120604|dbj|BAJ78693.1| RNA polymerase II second largest subunit [Thermobia domestica]
          Length = 1175

 Score =  774 bits (1999), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/487 (78%), Positives = 399/487 (81%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITN+HVRMDTLAHVLYYPHKPLVTTR                              
Sbjct: 734  MGVYITNYHVRMDTLAHVLYYPHKPLVTTR------------------------------ 763

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINS+VAI CYTGYNQEDSVI+NASAVERG+FR
Sbjct: 764  ---------------SMEYLRFRELPAGINSVVAIACYTGYNQEDSVIMNASAVERGFFR 808

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVFFRSYKDAESKR  DQEEQFE+P R TCQGMRNAIYDKLDDDGIIAPG+RVSGDDVVI
Sbjct: 809  SVFFRSYKDAESKRFCDQEEQFERPTRNTCQGMRNAIYDKLDDDGIIAPGVRVSGDDVVI 868

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKTITLP+NEDELEGTTKR++KRD STFLRNSETGIVDQVM+TLN +GYKFCKIRVRSVR
Sbjct: 869  GKTITLPDNEDELEGTTKRYTKRDASTFLRNSETGIVDQVMITLNSEGYKFCKIRVRSVR 928

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 929  IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQG 988

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+NKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVM+NGHTGRKINAQ+FLGPTY
Sbjct: 989  KVSANKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMYNGHTGRKINAQIFLGPTY 1048

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGP+QILVRQPMEGRARDGGLRFGEMERDCQI+HGAAQFLRERL
Sbjct: 1049 YQRLKHMVDDKIHSRARGPLQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERL 1108

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FEVSDPYRIHVCNFCGLIAIAN+RN+TFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI
Sbjct: 1109 FEVSDPYRIHVCNFCGLIAIANLRNSTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 1168

Query: 445  APRLMVV 451
            APRLMV+
Sbjct: 1169 APRLMVI 1175


>gi|324120644|dbj|BAJ78713.1| RNA polymerase II second largest subunit [Thrips palmi]
          Length = 1150

 Score =  773 bits (1995), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/487 (78%), Positives = 397/487 (81%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITN+HVRMDTLAHVLYYPHKPLVTTR                              
Sbjct: 709  MGVYITNYHVRMDTLAHVLYYPHKPLVTTR------------------------------ 738

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNA+AVERG+FR
Sbjct: 739  ---------------SMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNATAVERGFFR 783

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSYKDAESKRIGDQEEQFEKPNR  CQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI
Sbjct: 784  SVFYRSYKDAESKRIGDQEEQFEKPNRNNCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 843

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKTITLPE +D+L+GTT+R +KRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVR
Sbjct: 844  GKTITLPETDDDLDGTTRRHTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVR 903

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCG+QYRQE                                   
Sbjct: 904  IPQIGDKFASRHGQKGTCGVQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECLQG 963

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VSSNKGEIGDATPFNDAVNVQKIS LLQ+YGY LRGNEVM+NGHTGRKINAQVFLGPTY
Sbjct: 964  KVSSNKGEIGDATPFNDAVNVQKISQLLQDYGYHLRGNEVMYNGHTGRKINAQVFLGPTY 1023

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQI+HGAAQFLRERL
Sbjct: 1024 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERL 1083

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FEVSDPYRIHVCNFCGLIAIAN+RNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI
Sbjct: 1084 FEVSDPYRIHVCNFCGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 1143

Query: 445  APRLMVV 451
            APRLMV 
Sbjct: 1144 APRLMVT 1150


>gi|332022245|gb|EGI62560.1| DNA-directed RNA polymerase II subunit RPB2 [Acromyrmex echinatior]
          Length = 1178

 Score =  773 bits (1995), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/487 (77%), Positives = 398/487 (81%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYPHKPLVTTR                              
Sbjct: 737  MGVYITNFHVRMDTLAHVLYYPHKPLVTTR------------------------------ 766

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERG+FR
Sbjct: 767  ---------------SMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFR 811

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSYK++ESK+IGDQEEQFEKP+R TC GMRNAIYDKLDDDGIIAPG+RVSGDDV+I
Sbjct: 812  SVFYRSYKESESKKIGDQEEQFEKPSRLTCSGMRNAIYDKLDDDGIIAPGIRVSGDDVII 871

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKTITLPE +DEL+ TTKRF+KRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVR
Sbjct: 872  GKTITLPETDDELDSTTKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVR 931

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 932  IPQIGDKFASRHGQKGTCGIQYRQEDMPFSSEGLTPDIIINPHAIPSRMTIGHLIECIQG 991

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+NKGEIGDATPFNDAVNVQKISTLLQEYGY LRGNEVM+NGHTGRKINAQVFLGPTY
Sbjct: 992  KVSANKGEIGDATPFNDAVNVQKISTLLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTY 1051

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL
Sbjct: 1052 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 1111

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FEVSDPYRIH+CNFCGLIAIAN+RNNTFECKGCKNKTQI+Q+RLPYAAKLLFQELM+MNI
Sbjct: 1112 FEVSDPYRIHICNFCGLIAIANLRNNTFECKGCKNKTQIAQIRLPYAAKLLFQELMAMNI 1171

Query: 445  APRLMVV 451
            APRLM +
Sbjct: 1172 APRLMTL 1178


>gi|324120614|dbj|BAJ78698.1| RNA polymerase II second largest subunit [Isonychia japonica]
          Length = 1150

 Score =  773 bits (1995), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/486 (78%), Positives = 397/486 (81%), Gaps = 81/486 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYP KPLVTTR                              
Sbjct: 709  MGVYITNFHVRMDTLAHVLYYPQKPLVTTR------------------------------ 738

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINS+VAI CYTGYNQEDSVI+NASAVERG+FR
Sbjct: 739  ---------------SMEYLRFRELPAGINSVVAIACYTGYNQEDSVIMNASAVERGFFR 783

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+F+RSYKD ESKRIGDQEEQFEKPNR TCQGMRNAIYDKLDDDGIIAPG+RVSGDDV+I
Sbjct: 784  SIFYRSYKDQESKRIGDQEEQFEKPNRATCQGMRNAIYDKLDDDGIIAPGVRVSGDDVII 843

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKTITLPEN+DELEGTTKR++KRD STFLRNSETGIVDQVM+TLN +GYKF KIRVRSVR
Sbjct: 844  GKTITLPENDDELEGTTKRYTKRDASTFLRNSETGIVDQVMITLNSEGYKFSKIRVRSVR 903

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 904  IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIVINPHAIPSRMTIGHLIECLQG 963

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+NKGEIGDATPFNDAVNVQKIS+LLQEYGY LRGNEVM+NGHTGRKINAQ+FLGPTY
Sbjct: 964  KVSANKGEIGDATPFNDAVNVQKISSLLQEYGYHLRGNEVMYNGHTGRKINAQIFLGPTY 1023

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL
Sbjct: 1024 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 1083

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FEVSDPYRIHVCNFCGLIAIAN+RNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI
Sbjct: 1084 FEVSDPYRIHVCNFCGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 1143

Query: 445  APRLMV 450
            APRLMV
Sbjct: 1144 APRLMV 1149


>gi|324120656|dbj|BAJ78719.1| RNA polymerase II second largest subunit [Metylophorus sp. E-43]
          Length = 1176

 Score =  772 bits (1993), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/487 (78%), Positives = 397/487 (81%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITN+HVRMDTLAHVL+YPHKPLVTTR                              
Sbjct: 735  MGVYITNYHVRMDTLAHVLFYPHKPLVTTR------------------------------ 764

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR
Sbjct: 765  ---------------SMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 809

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S F+RSYKD+ESKRIGDQEEQFEKP RQTCQGMRNA+YDKLDDDGII PG+RVSGDDVVI
Sbjct: 810  SCFYRSYKDSESKRIGDQEEQFEKPTRQTCQGMRNAMYDKLDDDGIITPGVRVSGDDVVI 869

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKTITLP+ +D+LEGTT+RF+KRD STFLRNSETG VDQVMLTLN +GYKFCKIRVRSVR
Sbjct: 870  GKTITLPDTDDDLEGTTRRFTKRDASTFLRNSETGCVDQVMLTLNAEGYKFCKIRVRSVR 929

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 930  IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECLQG 989

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+NKGEIGDATPFNDAVNVQKISTLLQEYGY LRGNE+M+NGHTGRKINAQVFLGPTY
Sbjct: 990  KVSANKGEIGDATPFNDAVNVQKISTLLQEYGYHLRGNELMYNGHTGRKINAQVFLGPTY 1049

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL
Sbjct: 1050 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 1109

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FEVSDPYRIHVCN CGLIAIAN+RNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI
Sbjct: 1110 FEVSDPYRIHVCNLCGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 1169

Query: 445  APRLMVV 451
            APRLMV+
Sbjct: 1170 APRLMVL 1176


>gi|324120654|dbj|BAJ78718.1| RNA polymerase II second largest subunit [Uroleucon
            nigrotuberculatum]
          Length = 1177

 Score =  772 bits (1993), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/487 (78%), Positives = 400/487 (82%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYPHKPLVTTR                              
Sbjct: 735  MGVYITNFHVRMDTLAHVLYYPHKPLVTTR------------------------------ 764

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERG+FR
Sbjct: 765  ---------------SMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFR 809

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVFFRSYKD+ESKRIGDQEE FEKPNRQ+CQGMRNAIYDKLDDDGII+PGLRVSGDDV+I
Sbjct: 810  SVFFRSYKDSESKRIGDQEEVFEKPNRQSCQGMRNAIYDKLDDDGIISPGLRVSGDDVII 869

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT+TLP+NEDELEGTTK++SKRD STFLRNSETG++DQV+LTLN +GYKFCKIRVRS R
Sbjct: 870  GKTMTLPDNEDELEGTTKKYSKRDCSTFLRNSETGLIDQVLLTLNSEGYKFCKIRVRSER 929

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 930  IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQG 989

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+NKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVM+NG +GRKINAQVFLGPTY
Sbjct: 990  KVSANKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMYNGFSGRKINAQVFLGPTY 1049

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQI+HGAAQFLRERL
Sbjct: 1050 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERL 1109

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FEVSDPYRIH+CNFCGLIAIAN+RNNTFECKGCKNKTQISQV+LPYAAKLLFQELMSMNI
Sbjct: 1110 FEVSDPYRIHICNFCGLIAIANLRNNTFECKGCKNKTQISQVKLPYAAKLLFQELMSMNI 1169

Query: 445  APRLMVV 451
            APRLMV 
Sbjct: 1170 APRLMVT 1176


>gi|156538773|ref|XP_001607902.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Nasonia
            vitripennis]
          Length = 1175

 Score =  770 bits (1989), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/486 (77%), Positives = 398/486 (81%), Gaps = 81/486 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYPHKPLVTTR                              
Sbjct: 734  MGVYITNFHVRMDTLAHVLYYPHKPLVTTR------------------------------ 763

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAILCYTGYNQEDS+ILN SAVERG+FR
Sbjct: 764  ---------------SMEYLRFRELPAGINSIVAILCYTGYNQEDSIILNTSAVERGFFR 808

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSYKD+E+KR+GD EEQFEKPNRQTCQGMRNAIYDKLD+DGII+PG+RVSGDDV+I
Sbjct: 809  SVFYRSYKDSETKRLGDVEEQFEKPNRQTCQGMRNAIYDKLDEDGIISPGIRVSGDDVII 868

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT+TLPE +D+L+ +TKRF+KRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVR
Sbjct: 869  GKTMTLPETDDDLDSSTKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVR 928

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 929  IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGMTPDIIINPHAIPSRMTIGHLIECIQG 988

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+NKGEIGDATPFNDAVNVQKISTLL EYGYQLRGNE+M+NGHTGRKINAQVFLGPTY
Sbjct: 989  KVSANKGEIGDATPFNDAVNVQKISTLLMEYGYQLRGNEIMYNGHTGRKINAQVFLGPTY 1048

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL
Sbjct: 1049 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 1108

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FEVSDPYRIHVCNFCGLIAIAN+RNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI
Sbjct: 1109 FEVSDPYRIHVCNFCGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 1168

Query: 445  APRLMV 450
            APRLM+
Sbjct: 1169 APRLMI 1174


>gi|324120678|dbj|BAJ78730.1| RNA polymerase II second largest subunit [Panorpa takenouchii]
          Length = 1172

 Score =  769 bits (1985), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/487 (77%), Positives = 399/487 (81%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITN+HVRMDTLAHVLYYP KPLVTTR                              
Sbjct: 731  MGVYITNYHVRMDTLAHVLYYPMKPLVTTR------------------------------ 760

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGIN+IVAILCYTGYNQEDSVILNASAVERG+FR
Sbjct: 761  ---------------SMEYLRFRELPAGINTIVAILCYTGYNQEDSVILNASAVERGFFR 805

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSYKD+E+KR+GDQEEQFEKP RQ+CQGMRNA+YDKLD+DGIIAPG+RVSGDDV+I
Sbjct: 806  SVFYRSYKDSETKRLGDQEEQFEKPTRQSCQGMRNALYDKLDEDGIIAPGIRVSGDDVII 865

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKTITLPEN+DELEGTTKR +KRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVR
Sbjct: 866  GKTITLPENDDELEGTTKRHTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVR 925

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 926  IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECIQG 985

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             + +NKGEIGDATPFNDAVNVQKISTLLQEYGY LRGNEVM+NGHTGRKINAQVFLGPTY
Sbjct: 986  KLGANKGEIGDATPFNDAVNVQKISTLLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTY 1045

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQI+HGAAQFLRERL
Sbjct: 1046 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERL 1105

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FEVSDPYRIHVCNFCGLIAIAN+R+NTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI
Sbjct: 1106 FEVSDPYRIHVCNFCGLIAIANLRSNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 1165

Query: 445  APRLMVV 451
            APRLMV+
Sbjct: 1166 APRLMVL 1172


>gi|194900689|ref|XP_001979888.1| GG16840 [Drosophila erecta]
 gi|190651591|gb|EDV48846.1| GG16840 [Drosophila erecta]
          Length = 1176

 Score =  769 bits (1985), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/486 (78%), Positives = 394/486 (81%), Gaps = 81/486 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYP KPLVTTR                              
Sbjct: 735  MGVYITNFHVRMDTLAHVLYYPMKPLVTTR------------------------------ 764

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERG+FR
Sbjct: 765  ---------------SMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFR 809

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSYKD+E+KR+GDQEE FEKPNR TCQGMRNA YDKLDDDGIIAPG+RVSGDDVVI
Sbjct: 810  SVFYRSYKDSENKRVGDQEENFEKPNRGTCQGMRNAHYDKLDDDGIIAPGIRVSGDDVVI 869

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKTITLPEN+DEL+  TKRFSKRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVR
Sbjct: 870  GKTITLPENDDELDSNTKRFSKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVR 929

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 930  IPQIGDKFASRHGQKGTCGIQYRQEDMAFTCEGLAPDIIINPHAIPSRMTIGHLIECLQG 989

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             + SNKGEIGDATPFNDAVNVQKIST LQEYGY LRGNEVM+NGHTGRKINAQVFLGPTY
Sbjct: 990  KLGSNKGEIGDATPFNDAVNVQKISTFLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTY 1049

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL
Sbjct: 1050 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 1109

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FEVSDPYR+H+CNFCGLIAIAN+RNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI
Sbjct: 1110 FEVSDPYRVHICNFCGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 1169

Query: 445  APRLMV 450
            APRLMV
Sbjct: 1170 APRLMV 1175


>gi|324120612|dbj|BAJ78697.1| RNA polymerase II second largest subunit [Ephemera japonica]
          Length = 1179

 Score =  768 bits (1983), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/486 (77%), Positives = 396/486 (81%), Gaps = 81/486 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYP KPLVTTR                              
Sbjct: 738  MGVYITNFHVRMDTLAHVLYYPQKPLVTTR------------------------------ 767

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINS+VAI CYTGYNQEDSVI+NASAVERG+FR
Sbjct: 768  ---------------SMEYLRFRELPAGINSVVAIACYTGYNQEDSVIMNASAVERGFFR 812

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+F+RSYKD ESK+IGDQEEQFEKPNR TCQGMRNAIYDKLDDDGIIAPG+RVSGDDV+I
Sbjct: 813  SIFYRSYKDQESKKIGDQEEQFEKPNRATCQGMRNAIYDKLDDDGIIAPGVRVSGDDVII 872

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKTITLPEN+DELEG+TK++ KRD STFLRNSETGIVDQVM+TLN +GYKF KIRVRSVR
Sbjct: 873  GKTITLPENDDELEGSTKKYVKRDASTFLRNSETGIVDQVMITLNSEGYKFSKIRVRSVR 932

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 933  IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQG 992

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+NKGEIGDATPFNDAVNVQKIS+LLQEYGY LRGNEVM+NGHTGRKINAQ+FLGPTY
Sbjct: 993  KVSANKGEIGDATPFNDAVNVQKISSLLQEYGYHLRGNEVMYNGHTGRKINAQIFLGPTY 1052

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQI+HGAAQFLRERL
Sbjct: 1053 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERL 1112

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FEVSDPYRIHVCNFCGLIAIAN+RNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI
Sbjct: 1113 FEVSDPYRIHVCNFCGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 1172

Query: 445  APRLMV 450
            APRLMV
Sbjct: 1173 APRLMV 1178


>gi|195392246|ref|XP_002054770.1| RNA polymerase II 140kD subunit [Drosophila virilis]
 gi|194152856|gb|EDW68290.1| RNA polymerase II 140kD subunit [Drosophila virilis]
          Length = 1176

 Score =  767 bits (1981), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/486 (77%), Positives = 394/486 (81%), Gaps = 81/486 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYP KPLVTTR                              
Sbjct: 735  MGVYITNFHVRMDTLAHVLYYPMKPLVTTR------------------------------ 764

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERG+FR
Sbjct: 765  ---------------SMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFR 809

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSYKDAE+KR+GDQEE FEKP+R TCQGMRNA YDKLDDDGIIAPG+RVSGDDVVI
Sbjct: 810  SVFYRSYKDAENKRVGDQEENFEKPHRGTCQGMRNAHYDKLDDDGIIAPGIRVSGDDVVI 869

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKTITLPEN+DEL+  TKRF+KRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVR
Sbjct: 870  GKTITLPENDDELDSNTKRFAKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVR 929

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 930  IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLAPDIIINPHAIPSRMTIGHLIECLQG 989

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             + SNKGEIGDATPFNDAVNVQKIST LQEYGY LRGNEVM+NGHTGRKINAQVFLGPTY
Sbjct: 990  KLGSNKGEIGDATPFNDAVNVQKISTFLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTY 1049

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL
Sbjct: 1050 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 1109

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FEVSDPYR+H+CNFCGLIAIAN+RNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI
Sbjct: 1110 FEVSDPYRVHICNFCGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 1169

Query: 445  APRLMV 450
            APRLMV
Sbjct: 1170 APRLMV 1175


>gi|195109863|ref|XP_001999501.1| GI23040 [Drosophila mojavensis]
 gi|193916095|gb|EDW14962.1| GI23040 [Drosophila mojavensis]
          Length = 1176

 Score =  767 bits (1981), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/486 (77%), Positives = 394/486 (81%), Gaps = 81/486 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYP KPLVTTR                              
Sbjct: 735  MGVYITNFHVRMDTLAHVLYYPMKPLVTTR------------------------------ 764

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERG+FR
Sbjct: 765  ---------------SMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFR 809

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSYKDAE+KR+GDQEE FEKP+R TCQGMRNA YDKLDDDGIIAPG+RVSGDDVVI
Sbjct: 810  SVFYRSYKDAENKRVGDQEENFEKPHRGTCQGMRNAHYDKLDDDGIIAPGIRVSGDDVVI 869

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKTITLPEN+DEL+  TKRF+KRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVR
Sbjct: 870  GKTITLPENDDELDSNTKRFAKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVR 929

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 930  IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLAPDIIINPHAIPSRMTIGHLIECLQG 989

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             + SNKGEIGDATPFNDAVNVQKIST LQEYGY LRGNEVM+NGHTGRKINAQVFLGPTY
Sbjct: 990  KLGSNKGEIGDATPFNDAVNVQKISTFLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTY 1049

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL
Sbjct: 1050 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 1109

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FEVSDPYR+H+CNFCGLIAIAN+RNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI
Sbjct: 1110 FEVSDPYRVHICNFCGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 1169

Query: 445  APRLMV 450
            APRLMV
Sbjct: 1170 APRLMV 1175


>gi|195446199|ref|XP_002070673.1| GK12191 [Drosophila willistoni]
 gi|194166758|gb|EDW81659.1| GK12191 [Drosophila willistoni]
          Length = 1176

 Score =  767 bits (1980), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/486 (77%), Positives = 394/486 (81%), Gaps = 81/486 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYP KPLVTTR                              
Sbjct: 735  MGVYITNFHVRMDTLAHVLYYPMKPLVTTR------------------------------ 764

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERG+FR
Sbjct: 765  ---------------SMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFR 809

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSYKDAE+KR+GDQEE FEKP+R TCQGMRNA YDKLDDDGIIAPG+RVSGDDVVI
Sbjct: 810  SVFYRSYKDAENKRVGDQEENFEKPHRGTCQGMRNAHYDKLDDDGIIAPGIRVSGDDVVI 869

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKTITLPEN+DEL+  TKRF+KRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVR
Sbjct: 870  GKTITLPENDDELDSNTKRFAKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVR 929

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 930  IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLAPDIIINPHAIPSRMTIGHLIECLQG 989

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             + SNKGEIGDATPFNDAVNVQKIST LQEYGY LRGNEVM+NGHTGRKINAQVFLGPTY
Sbjct: 990  KLGSNKGEIGDATPFNDAVNVQKISTFLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTY 1049

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL
Sbjct: 1050 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 1109

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FEVSDPYR+H+CNFCGLIAIAN+RNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI
Sbjct: 1110 FEVSDPYRVHICNFCGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 1169

Query: 445  APRLMV 450
            APRLMV
Sbjct: 1170 APRLMV 1175


>gi|17136444|ref|NP_476706.1| RNA polymerase II 140kD subunit [Drosophila melanogaster]
 gi|195329082|ref|XP_002031240.1| GM24152 [Drosophila sechellia]
 gi|12644108|sp|P08266.2|RPB2_DROME RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA
            polymerase II subunit 2; Short=RNA polymerase II subunit
            B2; AltName: Full=DNA-directed RNA polymerase II 140 kDa
            polypeptide
 gi|7299847|gb|AAF55024.1| RNA polymerase II 140kD subunit [Drosophila melanogaster]
 gi|27819971|gb|AAO25022.1| LD22387p [Drosophila melanogaster]
 gi|194120183|gb|EDW42226.1| GM24152 [Drosophila sechellia]
          Length = 1176

 Score =  767 bits (1980), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/487 (77%), Positives = 394/487 (80%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYP KPLVTTR                              
Sbjct: 735  MGVYITNFHVRMDTLAHVLYYPMKPLVTTR------------------------------ 764

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERG+FR
Sbjct: 765  ---------------SMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFR 809

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSYKD+E+KR+GDQEE FEKP+R TCQGMRNA YDKLDDDGIIAPG+RVSGDDVVI
Sbjct: 810  SVFYRSYKDSENKRVGDQEENFEKPHRGTCQGMRNAHYDKLDDDGIIAPGIRVSGDDVVI 869

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKTITLPEN+DEL+  TKRFSKRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVR
Sbjct: 870  GKTITLPENDDELDSNTKRFSKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVR 929

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 930  IPQIGDKFASRHGQKGTCGIQYRQEDMAFTCEGLAPDIIINPHAIPSRMTIGHLIECLQG 989

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             + SNKGEIGDATPFNDAVNVQKIST LQEYGY LRGNEVM+NGHTGRKINAQVFLGPTY
Sbjct: 990  KLGSNKGEIGDATPFNDAVNVQKISTFLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTY 1049

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL
Sbjct: 1050 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 1109

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FEVSDPYR+H+CNFCGLIAIAN+RNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI
Sbjct: 1110 FEVSDPYRVHICNFCGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 1169

Query: 445  APRLMVV 451
            APRLMV 
Sbjct: 1170 APRLMVT 1176


>gi|195501705|ref|XP_002097907.1| GE24221 [Drosophila yakuba]
 gi|194184008|gb|EDW97619.1| GE24221 [Drosophila yakuba]
          Length = 1176

 Score =  767 bits (1980), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/486 (77%), Positives = 394/486 (81%), Gaps = 81/486 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYP KPLVTTR                              
Sbjct: 735  MGVYITNFHVRMDTLAHVLYYPMKPLVTTR------------------------------ 764

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERG+FR
Sbjct: 765  ---------------SMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFR 809

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSYKD+E+KR+GDQEE FEKP+R TCQGMRNA YDKLDDDGIIAPG+RVSGDDVVI
Sbjct: 810  SVFYRSYKDSENKRVGDQEENFEKPHRGTCQGMRNAHYDKLDDDGIIAPGIRVSGDDVVI 869

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKTITLPEN+DEL+  TKRFSKRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVR
Sbjct: 870  GKTITLPENDDELDSNTKRFSKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVR 929

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 930  IPQIGDKFASRHGQKGTCGIQYRQEDMAFTCEGLAPDIIINPHAIPSRMTIGHLIECLQG 989

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             + SNKGEIGDATPFNDAVNVQKIST LQEYGY LRGNEVM+NGHTGRKINAQVFLGPTY
Sbjct: 990  KLGSNKGEIGDATPFNDAVNVQKISTFLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTY 1049

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL
Sbjct: 1050 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 1109

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FEVSDPYR+H+CNFCGLIAIAN+RNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI
Sbjct: 1110 FEVSDPYRVHICNFCGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 1169

Query: 445  APRLMV 450
            APRLMV
Sbjct: 1170 APRLMV 1175


>gi|5514652|emb|CAA29180.2| RNA polymerase [Drosophila melanogaster]
          Length = 1123

 Score =  766 bits (1978), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/487 (77%), Positives = 394/487 (80%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYP KPLVTTR                              
Sbjct: 682  MGVYITNFHVRMDTLAHVLYYPMKPLVTTR------------------------------ 711

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERG+FR
Sbjct: 712  ---------------SMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFR 756

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSYKD+E+KR+GDQEE FEKP+R TCQGMRNA YDKLDDDGIIAPG+RVSGDDVVI
Sbjct: 757  SVFYRSYKDSENKRVGDQEENFEKPHRGTCQGMRNAHYDKLDDDGIIAPGIRVSGDDVVI 816

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKTITLPEN+DEL+  TKRFSKRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVR
Sbjct: 817  GKTITLPENDDELDSNTKRFSKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVR 876

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 877  IPQIGDKFASRHGQKGTCGIQYRQEDMAFTCEGLAPDIIINPHAIPSRMTIGHLIECLQG 936

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             + SNKGEIGDATPFNDAVNVQKIST LQEYGY LRGNEVM+NGHTGRKINAQVFLGPTY
Sbjct: 937  KLGSNKGEIGDATPFNDAVNVQKISTFLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTY 996

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL
Sbjct: 997  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 1056

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FEVSDPYR+H+CNFCGLIAIAN+RNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI
Sbjct: 1057 FEVSDPYRVHICNFCGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 1116

Query: 445  APRLMVV 451
            APRLMV 
Sbjct: 1117 APRLMVT 1123


>gi|195145272|ref|XP_002013620.1| GL24239 [Drosophila persimilis]
 gi|198452242|ref|XP_001358686.2| GA16485 [Drosophila pseudoobscura pseudoobscura]
 gi|194102563|gb|EDW24606.1| GL24239 [Drosophila persimilis]
 gi|198131848|gb|EAL27829.2| GA16485 [Drosophila pseudoobscura pseudoobscura]
          Length = 1176

 Score =  766 bits (1977), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/486 (77%), Positives = 394/486 (81%), Gaps = 81/486 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYP KPLVTTR                              
Sbjct: 735  MGVYITNFHVRMDTLAHVLYYPMKPLVTTR------------------------------ 764

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERG+FR
Sbjct: 765  ---------------SMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFR 809

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSYKD+E+KR+GDQEE FEKP+R TCQGMRNA YDKLDDDGIIAPG+RVSGDDVVI
Sbjct: 810  SVFYRSYKDSENKRVGDQEENFEKPHRGTCQGMRNAHYDKLDDDGIIAPGIRVSGDDVVI 869

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKTITLPEN+DEL+  TKRF+KRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVR
Sbjct: 870  GKTITLPENDDELDSNTKRFAKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVR 929

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 930  IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLAPDIIINPHAIPSRMTIGHLIECLQG 989

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             + SNKGEIGDATPFNDAVNVQKIST LQEYGY LRGNEVM+NGHTGRKINAQVFLGPTY
Sbjct: 990  KLGSNKGEIGDATPFNDAVNVQKISTFLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTY 1049

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL
Sbjct: 1050 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 1109

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FEVSDPYR+H+CNFCGLIAIAN+RNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI
Sbjct: 1110 FEVSDPYRVHICNFCGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 1169

Query: 445  APRLMV 450
            APRLMV
Sbjct: 1170 APRLMV 1175


>gi|194745991|ref|XP_001955468.1| GF16238 [Drosophila ananassae]
 gi|190628505|gb|EDV44029.1| GF16238 [Drosophila ananassae]
          Length = 1176

 Score =  766 bits (1977), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/486 (77%), Positives = 394/486 (81%), Gaps = 81/486 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYP KPLVTTR                              
Sbjct: 735  MGVYITNFHVRMDTLAHVLYYPMKPLVTTR------------------------------ 764

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERG+FR
Sbjct: 765  ---------------SMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFR 809

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSYKD+E+KR+GDQEE FEKP+R TCQGMRNA YDKLDDDGIIAPG+RVSGDDVVI
Sbjct: 810  SVFYRSYKDSENKRVGDQEENFEKPHRGTCQGMRNAHYDKLDDDGIIAPGIRVSGDDVVI 869

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKTITLPEN+DEL+  TKRF+KRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVR
Sbjct: 870  GKTITLPENDDELDSNTKRFAKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVR 929

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 930  IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLAPDIIINPHAIPSRMTIGHLIECLQG 989

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             + SNKGEIGDATPFNDAVNVQKIST LQEYGY LRGNEVM+NGHTGRKINAQVFLGPTY
Sbjct: 990  KLGSNKGEIGDATPFNDAVNVQKISTFLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTY 1049

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL
Sbjct: 1050 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 1109

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FEVSDPYR+H+CNFCGLIAIAN+RNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI
Sbjct: 1110 FEVSDPYRVHICNFCGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 1169

Query: 445  APRLMV 450
            APRLMV
Sbjct: 1170 APRLMV 1175


>gi|195064711|ref|XP_001996619.1| GH19704 [Drosophila grimshawi]
 gi|193892751|gb|EDV91617.1| GH19704 [Drosophila grimshawi]
          Length = 1175

 Score =  766 bits (1977), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/486 (77%), Positives = 394/486 (81%), Gaps = 81/486 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYP KPLVTTR                              
Sbjct: 734  MGVYITNFHVRMDTLAHVLYYPMKPLVTTR------------------------------ 763

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERG+FR
Sbjct: 764  ---------------SMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFR 808

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSYKD+E+KR+GDQEE FEKP+R TCQGMRNA YDKLDDDGIIAPG+RVSGDDVVI
Sbjct: 809  SVFYRSYKDSENKRVGDQEENFEKPHRGTCQGMRNAHYDKLDDDGIIAPGIRVSGDDVVI 868

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKTITLPEN+DEL+  TKRF+KRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVR
Sbjct: 869  GKTITLPENDDELDSNTKRFAKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVR 928

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 929  IPQIGDKFASRHGQKGTCGIQYRQEDMAFTCEGLAPDIIINPHAIPSRMTIGHLIECLQG 988

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             + SNKGEIGDATPFNDAVNVQKIST LQEYGY LRGNEVM+NGHTGRKINAQVFLGPTY
Sbjct: 989  KLGSNKGEIGDATPFNDAVNVQKISTFLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTY 1048

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL
Sbjct: 1049 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 1108

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FEVSDPYR+H+CNFCGLIAIAN+RNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI
Sbjct: 1109 FEVSDPYRVHICNFCGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 1168

Query: 445  APRLMV 450
            APRLMV
Sbjct: 1169 APRLMV 1174


>gi|195570991|ref|XP_002103487.1| GD18948 [Drosophila simulans]
 gi|194199414|gb|EDX12990.1| GD18948 [Drosophila simulans]
          Length = 1176

 Score =  765 bits (1975), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/487 (77%), Positives = 393/487 (80%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYP KPLVTTR                              
Sbjct: 735  MGVYITNFHVRMDTLAHVLYYPMKPLVTTR------------------------------ 764

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERG+FR
Sbjct: 765  ---------------SMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFR 809

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSYKD+E+KR+GDQEE FEKP+R TCQGMRNA YDKLDDDGIIAPG+RVSGDDVVI
Sbjct: 810  SVFYRSYKDSENKRVGDQEENFEKPHRGTCQGMRNAHYDKLDDDGIIAPGIRVSGDDVVI 869

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKTITLPEN+DEL+  TKRFSKRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVR
Sbjct: 870  GKTITLPENDDELDSNTKRFSKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVR 929

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 930  IPQIGDKFASRHGQKGTCGIQYRQEDMAFTCEGLAPDIIINPHAIPSRMTIGHLIECLQG 989

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             + SNKGEIGDATPFNDAVNVQKIST LQEYGY LRGNEVM+NGHTGRKINAQVFLGPTY
Sbjct: 990  KLGSNKGEIGDATPFNDAVNVQKISTFLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTY 1049

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL
Sbjct: 1050 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 1109

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FEVSDPYR+H+CNFCGLIAIAN+RNNTFECK CKNKTQISQVRLPYAAKLLFQELMSMNI
Sbjct: 1110 FEVSDPYRVHICNFCGLIAIANLRNNTFECKSCKNKTQISQVRLPYAAKLLFQELMSMNI 1169

Query: 445  APRLMVV 451
            APRLMV 
Sbjct: 1170 APRLMVT 1176


>gi|324120596|dbj|BAJ78689.1| RNA polymerase II second largest subunit [Lepidocampa weberi]
          Length = 1179

 Score =  757 bits (1955), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/487 (75%), Positives = 393/487 (80%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVL+YP KPLVTTR                              
Sbjct: 738  MGVYITNFHVRMDTLAHVLFYPQKPLVTTR------------------------------ 767

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINS+VAI CYTGYNQEDSVI+NASAVERG+FR
Sbjct: 768  ---------------SMEYLRFRELPAGINSVVAIACYTGYNQEDSVIMNASAVERGFFR 812

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSYKD E KR GDQEEQFEKP ++TCQGMRNAIYDKLD+DGIIAPG+RVSGDDV+I
Sbjct: 813  SVFYRSYKDQECKRSGDQEEQFEKPTKETCQGMRNAIYDKLDEDGIIAPGIRVSGDDVII 872

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKTITLPEN+DELEGTT+RF+KRD STFLRNSETGIVDQVM+TLN +GYKFCKIRVRSVR
Sbjct: 873  GKTITLPENDDELEGTTRRFTKRDASTFLRNSETGIVDQVMVTLNAEGYKFCKIRVRSVR 932

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 933  IPQIGDKFASRHGQKGTCGIQYRQEDMIFTCEGLTPDIIINPHAIPSRMTIGHLIECLQG 992

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+NKGEIGDATPFND VNVQKIS LLQEYGYQLRGNEVM+NG +GRKINAQ+FLGPTY
Sbjct: 993  KVSANKGEIGDATPFNDTVNVQKISNLLQEYGYQLRGNEVMYNGQSGRKINAQIFLGPTY 1052

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQI+HGAAQFLRERL
Sbjct: 1053 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERL 1112

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FEVSDPYRIHVCN CGLIAIAN+RNNTFECKGCKNKTQISQVRLPYAAKLLFQELM+MNI
Sbjct: 1113 FEVSDPYRIHVCNLCGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMAMNI 1172

Query: 445  APRLMVV 451
            APR+MV 
Sbjct: 1173 APRMMVT 1179


>gi|324120594|dbj|BAJ78688.1| RNA polymerase II second largest subunit [Metriocampa sp. 44]
          Length = 1176

 Score =  755 bits (1949), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/487 (76%), Positives = 391/487 (80%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVL+YP KPLVTTR                              
Sbjct: 735  MGVYITNFHVRMDTLAHVLFYPQKPLVTTR------------------------------ 764

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAI CYTGYNQEDSVI+N SAVERG+FR
Sbjct: 765  ---------------SMEYLRFRELPAGINSIVAIACYTGYNQEDSVIMNTSAVERGFFR 809

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+R+YKD E KR GDQEEQFEKP R++CQGMRNAIYDKLDDDGIIAPG+RVSGDDV+I
Sbjct: 810  SVFYRAYKDQECKRSGDQEEQFEKPTRESCQGMRNAIYDKLDDDGIIAPGIRVSGDDVII 869

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKTITLP  +DELEGTTKRFSKRD STFLRNSETGIVDQVM+TLN +GYKFCKIRVRSVR
Sbjct: 870  GKTITLPITDDELEGTTKRFSKRDASTFLRNSETGIVDQVMVTLNNEGYKFCKIRVRSVR 929

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 930  IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECLQG 989

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+NKGEIGDATPFND VNVQKIS LLQEYGYQLRGNEVM+NG TGRKINAQ+FLGPTY
Sbjct: 990  KVSANKGEIGDATPFNDTVNVQKISNLLQEYGYQLRGNEVMYNGQTGRKINAQIFLGPTY 1049

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQI+HGAAQFLRERL
Sbjct: 1050 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERL 1109

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FEVSDPYR+HVCN CGLIAIAN+RNNTFECKGCKNKTQISQVRLPYAAKLLFQELM+MNI
Sbjct: 1110 FEVSDPYRVHVCNLCGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMAMNI 1169

Query: 445  APRLMVV 451
            APRLMVV
Sbjct: 1170 APRLMVV 1176


>gi|321470077|gb|EFX81055.1| hypothetical protein DAPPUDRAFT_102782 [Daphnia pulex]
          Length = 1174

 Score =  750 bits (1936), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/487 (76%), Positives = 389/487 (79%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVL YP KPLVTTR                              
Sbjct: 733  MGVYITNFHVRMDTLAHVLQYPQKPLVTTR------------------------------ 762

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINS+VAIL YTGYNQEDSVI+NASAVERG+FR
Sbjct: 763  ---------------SMEYLRFRELPAGINSVVAILSYTGYNQEDSVIMNASAVERGFFR 807

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVFFRSYKD ESKR  DQEE FEKP R  CQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI
Sbjct: 808  SVFFRSYKDQESKRSADQEETFEKPFRDHCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 867

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKTITLPEN+D+LE TTK+FSKRD STFLR+SETGIVDQVMLTLN +G KFCKIRVRSVR
Sbjct: 868  GKTITLPENDDDLESTTKKFSKRDASTFLRHSETGIVDQVMLTLNAEGNKFCKIRVRSVR 927

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 928  IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIIINPHAIPSRMTIGHLIECLQG 987

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+NKGEIGDATPFNDAVNVQKIS LLQEYGY LRGNEV++NGHTGRK+NAQVFLGPTY
Sbjct: 988  KVSANKGEIGDATPFNDAVNVQKISNLLQEYGYHLRGNEVLYNGHTGRKLNAQVFLGPTY 1047

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQI+HGAAQFLRERL
Sbjct: 1048 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIAHGAAQFLRERL 1107

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FEVSDPYRIHVCN CG+IA+AN+RNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI
Sbjct: 1108 FEVSDPYRIHVCNLCGIIAVANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 1167

Query: 445  APRLMVV 451
            APRLMV+
Sbjct: 1168 APRLMVI 1174


>gi|391332506|ref|XP_003740675.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
            [Metaseiulus occidentalis]
          Length = 1178

 Score =  739 bits (1907), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/487 (73%), Positives = 386/487 (79%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYPHKPL TTR                              
Sbjct: 732  MGVYITNFHVRMDTLAHVLYYPHKPLTTTR------------------------------ 761

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGIN+IVAI+ YTGYNQEDSVILNASAV+RG+FR
Sbjct: 762  ---------------SMEYLRFRELPAGINAIVAIMSYTGYNQEDSVILNASAVDRGFFR 806

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSYKD+E+KR+GDQEE FEKP R+TCQGMRNAIYDKLDDDGIIAPG RVSGDDV+I
Sbjct: 807  SVFYRSYKDSENKRMGDQEETFEKPTRETCQGMRNAIYDKLDDDGIIAPGTRVSGDDVII 866

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKTITLPEN+D+L+ T KR+SKRD STFLRNSETGIVDQVMLT+N DGYKFCKIRVRSVR
Sbjct: 867  GKTITLPENDDDLDSTNKRYSKRDASTFLRNSETGIVDQVMLTINSDGYKFCKIRVRSVR 926

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCG+ YRQE                                   
Sbjct: 927  IPQIGDKFASRHGQKGTCGVTYRQEDMPFTVEGLTPDIIINPHAIPSRMTIGHLIECLQG 986

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             V+SNKGEIGDATPFNDAVNVQKIS +L EYGY LRGNEVM+NGHTGRK+NAQ+FLGPTY
Sbjct: 987  KVASNKGEIGDATPFNDAVNVQKISNILMEYGYHLRGNEVMYNGHTGRKVNAQIFLGPTY 1046

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL
Sbjct: 1047 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 1106

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            F  SDPYR H+CN CGLIAIAN+RNN FECKGC+NKTQISQ+ LPYA KLLFQELMSMNI
Sbjct: 1107 FFASDPYRTHICNICGLIAIANLRNNIFECKGCRNKTQISQITLPYACKLLFQELMSMNI 1166

Query: 445  APRLMVV 451
            APR+MV+
Sbjct: 1167 APRMMVL 1173


>gi|324120668|dbj|BAJ78725.1| RNA polymerase II second largest subunit [Stichotrema asahinai]
          Length = 1173

 Score =  733 bits (1893), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/486 (73%), Positives = 387/486 (79%), Gaps = 81/486 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYPHKPLVTTR                              
Sbjct: 733  MGVYITNFHVRMDTLAHVLYYPHKPLVTTR------------------------------ 762

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAILCYTGYNQEDS+I+NASAVERG+FR
Sbjct: 763  ---------------SMEYLRFRELPAGINSIVAILCYTGYNQEDSIIINASAVERGFFR 807

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSY+DAE +R+GDQ+EQFEKPNR TCQGMR+AIYDKLD+DGIIAPG+RVSGDDVVI
Sbjct: 808  SVFYRSYRDAEVRRLGDQDEQFEKPNRLTCQGMRHAIYDKLDEDGIIAPGVRVSGDDVVI 867

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKTITL ENEDELE  TK+++KRD STFLR SETG+VDQVMLTLN +GYKFCKIRVRSVR
Sbjct: 868  GKTITLMENEDELESVTKKYTKRDASTFLRRSETGVVDQVMLTLNAEGYKFCKIRVRSVR 927

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 928  IPQIGDKFASRHGQKGTCGIQYRQEDMPFTSEGITPDIIINPHAIPSRMTIGHLIECLQG 987

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+NKGEIGDATPFNDAVNVQKIS LLQEYGY LRGNE+M+NG+TGRKINAQ+F+GPTY
Sbjct: 988  KVSANKGEIGDATPFNDAVNVQKISHLLQEYGYNLRGNEIMYNGYTGRKINAQIFIGPTY 1047

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQILVRQP+EGRARDGGLRFGEMERDCQISHGAAQFLRERL
Sbjct: 1048 YQRLKHMVDDKIHSRARGPVQILVRQPLEGRARDGGLRFGEMERDCQISHGAAQFLRERL 1107

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            F VSDPYRIHVCN CGLI IAN+RNNTFECK CKNKTQISQV LPYA+KLL QELM+M I
Sbjct: 1108 FTVSDPYRIHVCNLCGLIVIANLRNNTFECKSCKNKTQISQVHLPYASKLLMQELMAMLI 1167

Query: 445  APRLMV 450
            +PR+ V
Sbjct: 1168 SPRIAV 1173


>gi|312381454|gb|EFR27200.1| hypothetical protein AND_06234 [Anopheles darlingi]
          Length = 1954

 Score =  729 bits (1882), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/458 (78%), Positives = 371/458 (81%), Gaps = 81/458 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYP KPLVTTR                              
Sbjct: 734  MGVYITNFHVRMDTLAHVLYYPMKPLVTTR------------------------------ 763

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERG+FR
Sbjct: 764  ---------------SMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFR 808

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSYKD+ESKRIGDQEEQFEKPNRQTCQGMRNA+YDKLD+DGIIAPGLRVSGDDVVI
Sbjct: 809  SVFYRSYKDSESKRIGDQEEQFEKPNRQTCQGMRNALYDKLDEDGIIAPGLRVSGDDVVI 868

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKTITLPE +D+L+GTTKRF+KRDGSTFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVR
Sbjct: 869  GKTITLPETDDDLDGTTKRFTKRDGSTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVR 928

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 929  IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECIQG 988

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             + SNKGEIGDATPFNDAVNVQKIST LQEYGY LRGNEVM+NGHTGRKINAQVFLGPTY
Sbjct: 989  KLGSNKGEIGDATPFNDAVNVQKISTFLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTY 1048

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL
Sbjct: 1049 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 1108

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQ 422
            FEVSDPYRIHVCNFCGLIAIAN+RNNTFECKGCKNKTQ
Sbjct: 1109 FEVSDPYRIHVCNFCGLIAIANLRNNTFECKGCKNKTQ 1146


>gi|241813048|ref|XP_002416483.1| DNA-directed RNA polymerase II, putative [Ixodes scapularis]
 gi|215510947|gb|EEC20400.1| DNA-directed RNA polymerase II, putative [Ixodes scapularis]
          Length = 1142

 Score =  716 bits (1848), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/455 (75%), Positives = 375/455 (82%), Gaps = 49/455 (10%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG+YITNFHVRMDTLAHVLYYPHKPL TTR                              
Sbjct: 733  MGIYITNFHVRMDTLAHVLYYPHKPLTTTR------------------------------ 762

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAI+ YTGYNQEDS+I+NASAV+RG+FR
Sbjct: 763  ---------------SMEYLRFRELPAGINSIVAIMSYTGYNQEDSIIVNASAVDRGFFR 807

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSYKD+E KR+GDQEEQFEKP R+TCQGMRNAIYDKLDDDGIIAPG RVSGDDV+I
Sbjct: 808  SVFYRSYKDSECKRVGDQEEQFEKPTRETCQGMRNAIYDKLDDDGIIAPGTRVSGDDVII 867

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKTITLPEN+D+LE T +RF+KRD STFLRNSETGIVDQVMLT+N +GYKFCKIRVRSVR
Sbjct: 868  GKTITLPENDDDLESTNRRFTKRDASTFLRNSETGIVDQVMLTVNAEGYKFCKIRVRSVR 927

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE--VSSNKGEIGD--ATPFNDAVNVQKISTLLQEYG 296
            IPQIGDKFASRHGQKGTCGI YRQE    +  G   D    P      + KIS LLQEYG
Sbjct: 928  IPQIGDKFASRHGQKGTCGITYRQEDMPFTADGLTPDIIINPHAIPSRMTKISNLLQEYG 987

Query: 297  YQLRGNEVMFNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRA 356
            Y LRGNEVM+NGHTGRK+NAQ+FLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRA
Sbjct: 988  YHLRGNEVMYNGHTGRKVNAQIFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRA 1047

Query: 357  RDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANMRNNTFECKG 416
            RDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYR H+CN CGL+AIAN+RNNTFECKG
Sbjct: 1048 RDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRAHICNLCGLLAIANLRNNTFECKG 1107

Query: 417  CKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMVV 451
            C+NKTQISQ+RLPYA KLLFQELMSM+IAPR+MV+
Sbjct: 1108 CRNKTQISQIRLPYACKLLFQELMSMSIAPRMMVL 1142


>gi|291241363|ref|XP_002740582.1| PREDICTED: DNA directed RNA polymerase II polypeptide B-like
            [Saccoglossus kowalevskii]
          Length = 1175

 Score =  711 bits (1834), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/487 (70%), Positives = 383/487 (78%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITN+HVRMDTLAHVLYYP KPLVTTR                              
Sbjct: 733  MGVYITNYHVRMDTLAHVLYYPQKPLVTTR------------------------------ 762

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAI  YTGYNQEDSVI+N SAVERG+FR
Sbjct: 763  ---------------SMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNLSAVERGFFR 807

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSY+D ESK+  DQEE FEKP+R++CQGMR A+YDKLDDDGIIAPG RVSGDDV+I
Sbjct: 808  SVFYRSYRDQESKKGLDQEEVFEKPDRESCQGMRMAVYDKLDDDGIIAPGSRVSGDDVLI 867

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT+TLPEN+DELEGTT+RF+KRD STF+R +ETGIVDQVM+++N +GYKFCKI++RSVR
Sbjct: 868  GKTVTLPENDDELEGTTRRFTKRDSSTFMRRTETGIVDQVMVSINQEGYKFCKIKIRSVR 927

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 928  IPQIGDKFASRHGQKGTCGIQYRQEDMPFTAEGITPDIIINPHAIPSRMTIGHLIECLQG 987

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+NKGEIGDATPFND VNVQKIS LL EYGY LRGNEV++NG TGRK+  Q+F+GPTY
Sbjct: 988  KVSANKGEIGDATPFNDTVNVQKISNLLHEYGYHLRGNEVLYNGFTGRKLGTQIFIGPTY 1047

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGP+QIL RQPMEGR+RDGGLRFGEMERDCQISHGAAQFLRERL
Sbjct: 1048 YQRLKHMVDDKIHSRARGPLQILNRQPMEGRSRDGGLRFGEMERDCQISHGAAQFLRERL 1107

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FEVSDPYR+HVCN CGLIAIAN+RNNTFEC+GCKNKTQISQ+RLPYA KLLFQELMSM+I
Sbjct: 1108 FEVSDPYRVHVCNLCGLIAIANLRNNTFECRGCKNKTQISQIRLPYACKLLFQELMSMSI 1167

Query: 445  APRLMVV 451
            APR+MV+
Sbjct: 1168 APRMMVL 1174


>gi|427798029|gb|JAA64466.1| Putative rna polymerase i second largest subunit, partial
            [Rhipicephalus pulchellus]
          Length = 1149

 Score =  704 bits (1817), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/461 (73%), Positives = 366/461 (79%), Gaps = 81/461 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG+YITNFHVRMDTLAHVLYYPHKPL TTR                              
Sbjct: 734  MGIYITNFHVRMDTLAHVLYYPHKPLTTTR------------------------------ 763

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAI+ YTGYNQEDS+I+NASAV+RG+FR
Sbjct: 764  ---------------SMEYLRFRELPAGINSIVAIMSYTGYNQEDSIIVNASAVDRGFFR 808

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSYKD+E KR+GDQEEQFEKP R+TCQGMRNAIYDKLDDDGIIAPG RVSGDDV+I
Sbjct: 809  SVFYRSYKDSECKRVGDQEEQFEKPTRETCQGMRNAIYDKLDDDGIIAPGTRVSGDDVII 868

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKTITLPEN+D+LE T +RF+KRD STFLRNSETGIVDQVMLT+N +GYKFCKIRVRSVR
Sbjct: 869  GKTITLPENDDDLESTNRRFTKRDASTFLRNSETGIVDQVMLTVNAEGYKFCKIRVRSVR 928

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGI YRQE                                   
Sbjct: 929  IPQIGDKFASRHGQKGTCGITYRQEDMPFTAEGLTPDIIINPHAIPSRMTIGHLIECLQG 988

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+NKGEIGDATPFND+VNVQKIS LLQEYGY LRGNEVMFNGHTGRK+NAQ+FLGPTY
Sbjct: 989  KVSANKGEIGDATPFNDSVNVQKISNLLQEYGYHLRGNEVMFNGHTGRKVNAQIFLGPTY 1048

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL
Sbjct: 1049 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 1108

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQ 425
            FEVSDPYR H+CN CGL+AIAN+RNNTFECKGC+NKTQISQ
Sbjct: 1109 FEVSDPYRAHICNLCGLLAIANLRNNTFECKGCRNKTQISQ 1149


>gi|154707850|ref|NP_001092552.1| DNA-directed RNA polymerase II subunit RPB2 [Bos taurus]
 gi|73975053|ref|XP_532382.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 2
            [Canis lupus familiaris]
 gi|301765482|ref|XP_002918158.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
            [Ailuropoda melanoleuca]
 gi|410957577|ref|XP_003985402.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 1
            [Felis catus]
 gi|426231739|ref|XP_004009895.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Ovis aries]
 gi|148744083|gb|AAI42268.1| POLR2B protein [Bos taurus]
 gi|296486557|tpg|DAA28670.1| TPA: DNA directed RNA polymerase II polypeptide B [Bos taurus]
          Length = 1174

 Score =  701 bits (1809), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/487 (70%), Positives = 380/487 (78%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYP KPLVTTR                              
Sbjct: 733  MGVYITNFHVRMDTLAHVLYYPQKPLVTTR------------------------------ 762

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAI  YTGYNQEDSVI+N SAV+RG+FR
Sbjct: 763  ---------------SMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFR 807

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSYK+ ESK+  DQEE FEKP R+TCQGMR+AIYDKLDDDG+IAPG+RVSGDDV+I
Sbjct: 808  SVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVII 867

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT+TLPENEDELEGT +R++KRD STFLR SETGIVDQVM+TLN +GYKFCKIRVRSVR
Sbjct: 868  GKTVTLPENEDELEGTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVR 927

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 928  IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQG 987

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+NKGEIGDATPFNDAVNVQKIS LL +YGY LRGNEV++NG TGRKI +Q+F+GPTY
Sbjct: 988  KVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTY 1047

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGP+QIL RQPMEGR+RDGGLRFGEMERDCQI+HGAAQFLRERL
Sbjct: 1048 YQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERL 1107

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FE SDPY++HVCN CG++AIAN R +T+EC+GC+NKTQIS VR+PYA KLLFQELMSM+I
Sbjct: 1108 FEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSI 1167

Query: 445  APRLMVV 451
            APR+M V
Sbjct: 1168 APRMMSV 1174


>gi|281352499|gb|EFB28083.1| hypothetical protein PANDA_006563 [Ailuropoda melanoleuca]
          Length = 1168

 Score =  701 bits (1809), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/487 (70%), Positives = 380/487 (78%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYP KPLVTTR                              
Sbjct: 727  MGVYITNFHVRMDTLAHVLYYPQKPLVTTR------------------------------ 756

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAI  YTGYNQEDSVI+N SAV+RG+FR
Sbjct: 757  ---------------SMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFR 801

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSYK+ ESK+  DQEE FEKP R+TCQGMR+AIYDKLDDDG+IAPG+RVSGDDV+I
Sbjct: 802  SVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVII 861

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT+TLPENEDELEGT +R++KRD STFLR SETGIVDQVM+TLN +GYKFCKIRVRSVR
Sbjct: 862  GKTVTLPENEDELEGTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVR 921

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 922  IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQG 981

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+NKGEIGDATPFNDAVNVQKIS LL +YGY LRGNEV++NG TGRKI +Q+F+GPTY
Sbjct: 982  KVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTY 1041

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGP+QIL RQPMEGR+RDGGLRFGEMERDCQI+HGAAQFLRERL
Sbjct: 1042 YQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERL 1101

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FE SDPY++HVCN CG++AIAN R +T+EC+GC+NKTQIS VR+PYA KLLFQELMSM+I
Sbjct: 1102 FEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSI 1161

Query: 445  APRLMVV 451
            APR+M V
Sbjct: 1162 APRMMSV 1168


>gi|440903358|gb|ELR54029.1| DNA-directed RNA polymerase II subunit RPB2 [Bos grunniens mutus]
          Length = 1175

 Score =  701 bits (1808), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/487 (70%), Positives = 380/487 (78%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYP KPLVTTR                              
Sbjct: 734  MGVYITNFHVRMDTLAHVLYYPQKPLVTTR------------------------------ 763

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAI  YTGYNQEDSVI+N SAV+RG+FR
Sbjct: 764  ---------------SMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFR 808

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSYK+ ESK+  DQEE FEKP R+TCQGMR+AIYDKLDDDG+IAPG+RVSGDDV+I
Sbjct: 809  SVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVII 868

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT+TLPENEDELEGT +R++KRD STFLR SETGIVDQVM+TLN +GYKFCKIRVRSVR
Sbjct: 869  GKTVTLPENEDELEGTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVR 928

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 929  IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQG 988

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+NKGEIGDATPFNDAVNVQKIS LL +YGY LRGNEV++NG TGRKI +Q+F+GPTY
Sbjct: 989  KVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTY 1048

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGP+QIL RQPMEGR+RDGGLRFGEMERDCQI+HGAAQFLRERL
Sbjct: 1049 YQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERL 1108

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FE SDPY++HVCN CG++AIAN R +T+EC+GC+NKTQIS VR+PYA KLLFQELMSM+I
Sbjct: 1109 FEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSI 1168

Query: 445  APRLMVV 451
            APR+M V
Sbjct: 1169 APRMMSV 1175


>gi|335293559|ref|XP_003129085.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Sus scrofa]
          Length = 1167

 Score =  701 bits (1808), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/487 (70%), Positives = 380/487 (78%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYP KPLVTTR                              
Sbjct: 726  MGVYITNFHVRMDTLAHVLYYPQKPLVTTR------------------------------ 755

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAI  YTGYNQEDSVI+N SAV+RG+FR
Sbjct: 756  ---------------SMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFR 800

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSYK+ ESK+  DQEE FEKP R+TCQGMR+AIYDKLDDDG+IAPG+RVSGDDV+I
Sbjct: 801  SVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVII 860

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT+TLPENEDELEGT +R++KRD STFLR SETGIVDQVM+TLN +GYKFCKIRVRSVR
Sbjct: 861  GKTVTLPENEDELEGTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVR 920

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 921  IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQG 980

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+NKGEIGDATPFNDAVNVQKIS LL +YGY LRGNEV++NG TGRKI +Q+F+GPTY
Sbjct: 981  KVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTY 1040

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGP+QIL RQPMEGR+RDGGLRFGEMERDCQI+HGAAQFLRERL
Sbjct: 1041 YQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERL 1100

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FE SDPY++HVCN CG++AIAN R +T+EC+GC+NKTQIS VR+PYA KLLFQELMSM+I
Sbjct: 1101 FEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSI 1160

Query: 445  APRLMVV 451
            APR+M V
Sbjct: 1161 APRMMSV 1167


>gi|73975081|ref|XP_861044.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 17
            [Canis lupus familiaris]
 gi|410957579|ref|XP_003985403.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 2
            [Felis catus]
          Length = 1099

 Score =  701 bits (1808), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/487 (70%), Positives = 380/487 (78%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYP KPLVTTR                              
Sbjct: 658  MGVYITNFHVRMDTLAHVLYYPQKPLVTTR------------------------------ 687

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAI  YTGYNQEDSVI+N SAV+RG+FR
Sbjct: 688  ---------------SMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFR 732

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSYK+ ESK+  DQEE FEKP R+TCQGMR+AIYDKLDDDG+IAPG+RVSGDDV+I
Sbjct: 733  SVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVII 792

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT+TLPENEDELEGT +R++KRD STFLR SETGIVDQVM+TLN +GYKFCKIRVRSVR
Sbjct: 793  GKTVTLPENEDELEGTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVR 852

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 853  IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQG 912

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+NKGEIGDATPFNDAVNVQKIS LL +YGY LRGNEV++NG TGRKI +Q+F+GPTY
Sbjct: 913  KVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTY 972

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGP+QIL RQPMEGR+RDGGLRFGEMERDCQI+HGAAQFLRERL
Sbjct: 973  YQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERL 1032

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FE SDPY++HVCN CG++AIAN R +T+EC+GC+NKTQIS VR+PYA KLLFQELMSM+I
Sbjct: 1033 FEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSI 1092

Query: 445  APRLMVV 451
            APR+M V
Sbjct: 1093 APRMMSV 1099


>gi|57530101|ref|NP_001006448.1| DNA-directed RNA polymerase II subunit RPB2 [Gallus gallus]
 gi|53127025|emb|CAG31004.1| hypothetical protein RCJMB04_1i14 [Gallus gallus]
          Length = 1174

 Score =  700 bits (1807), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/487 (70%), Positives = 379/487 (77%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYP KPLVTTR                              
Sbjct: 733  MGVYITNFHVRMDTLAHVLYYPQKPLVTTR------------------------------ 762

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAI  YTGYNQEDSVI+N SAV+RG+FR
Sbjct: 763  ---------------SMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFR 807

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSYK+ ESK+  DQEE FEKP R+TCQGMR+AIYDKLDDDG+IAPG+RVSGDDV+I
Sbjct: 808  SVFYRSYKEQESKKGYDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVII 867

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT+TLPENEDELE T +RF+KRD STFLR SETGIVDQVM+TLN +GYKFCKIRVRSVR
Sbjct: 868  GKTVTLPENEDELESTNRRFTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVR 927

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 928  IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQG 987

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+NKGEIGDATPFNDAVNVQKIS LL +YGY LRGNEV++NG TGRKI +Q+F+GPTY
Sbjct: 988  KVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTY 1047

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGP+QIL RQPMEGR+RDGGLRFGEMERDCQI+HGAAQFLRERL
Sbjct: 1048 YQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERL 1107

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FE SDPY++HVCN CG++AIAN R +T+EC+GC+NKTQIS VR+PYA KLLFQELMSM+I
Sbjct: 1108 FEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSI 1167

Query: 445  APRLMVV 451
            APR+M V
Sbjct: 1168 APRMMSV 1174


>gi|224049409|ref|XP_002192218.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Taeniopygia
            guttata]
          Length = 1174

 Score =  700 bits (1807), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/487 (70%), Positives = 379/487 (77%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYP KPLVTTR                              
Sbjct: 733  MGVYITNFHVRMDTLAHVLYYPQKPLVTTR------------------------------ 762

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAI  YTGYNQEDSVI+N SAV+RG+FR
Sbjct: 763  ---------------SMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFR 807

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSYK+ ESK+  DQEE FEKP R+TCQGMR+AIYDKLDDDG+IAPG+RVSGDDV+I
Sbjct: 808  SVFYRSYKEQESKKGYDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVII 867

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT+TLPENEDELE T +RF+KRD STFLR SETGIVDQVM+TLN +GYKFCKIRVRSVR
Sbjct: 868  GKTVTLPENEDELESTNRRFTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVR 927

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 928  IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQG 987

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+NKGEIGDATPFNDAVNVQKIS LL +YGY LRGNEV++NG TGRKI +Q+F+GPTY
Sbjct: 988  KVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTY 1047

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGP+QIL RQPMEGR+RDGGLRFGEMERDCQI+HGAAQFLRERL
Sbjct: 1048 YQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERL 1107

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FE SDPY++HVCN CG++AIAN R +T+EC+GC+NKTQIS VR+PYA KLLFQELMSM+I
Sbjct: 1108 FEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSI 1167

Query: 445  APRLMVV 451
            APR+M V
Sbjct: 1168 APRMMSV 1174


>gi|449270676|gb|EMC81333.1| DNA-directed RNA polymerase II subunit RPB2, partial [Columba livia]
          Length = 1168

 Score =  700 bits (1806), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/487 (70%), Positives = 379/487 (77%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYP KPLVTTR                              
Sbjct: 727  MGVYITNFHVRMDTLAHVLYYPQKPLVTTR------------------------------ 756

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAI  YTGYNQEDSVI+N SAV+RG+FR
Sbjct: 757  ---------------SMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFR 801

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSYK+ ESK+  DQEE FEKP R+TCQGMR+AIYDKLDDDG+IAPG+RVSGDDV+I
Sbjct: 802  SVFYRSYKEQESKKGYDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVII 861

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT+TLPENEDELE T +RF+KRD STFLR SETGIVDQVM+TLN +GYKFCKIRVRSVR
Sbjct: 862  GKTVTLPENEDELESTNRRFTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVR 921

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 922  IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQG 981

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+NKGEIGDATPFNDAVNVQKIS LL +YGY LRGNEV++NG TGRKI +Q+F+GPTY
Sbjct: 982  KVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTY 1041

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGP+QIL RQPMEGR+RDGGLRFGEMERDCQI+HGAAQFLRERL
Sbjct: 1042 YQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERL 1101

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FE SDPY++HVCN CG++AIAN R +T+EC+GC+NKTQIS VR+PYA KLLFQELMSM+I
Sbjct: 1102 FEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSI 1161

Query: 445  APRLMVV 451
            APR+M V
Sbjct: 1162 APRMMSV 1168


>gi|291401757|ref|XP_002717206.1| PREDICTED: DNA directed RNA polymerase II polypeptide B [Oryctolagus
            cuniculus]
          Length = 1174

 Score =  700 bits (1806), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/487 (70%), Positives = 379/487 (77%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYP KPLVTTR                              
Sbjct: 733  MGVYITNFHVRMDTLAHVLYYPQKPLVTTR------------------------------ 762

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAI  YTGYNQEDSVI+N SAV+RG+FR
Sbjct: 763  ---------------SMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFR 807

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSYK+ ESK+  DQEE FEKP R+TCQGMR+AIYDKLDDDG+IAPG+RVSGDDV+I
Sbjct: 808  SVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVII 867

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT+TLPENEDELE T +R++KRD STFLR SETGIVDQVM+TLN +GYKFCKIRVRSVR
Sbjct: 868  GKTVTLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVR 927

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 928  IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQG 987

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+NKGEIGDATPFNDAVNVQKIS LL +YGY LRGNEV++NG TGRKI +Q+FLGPTY
Sbjct: 988  KVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFLGPTY 1047

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGP+QIL RQPMEGR+RDGGLRFGEMERDCQI+HGAAQFLRERL
Sbjct: 1048 YQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERL 1107

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FE SDPY++HVCN CG++AIAN R +T+EC+GC+NKTQIS VR+PYA KLLFQELMSM+I
Sbjct: 1108 FEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSI 1167

Query: 445  APRLMVV 451
            APR+M V
Sbjct: 1168 APRMMSV 1174


>gi|344288485|ref|XP_003415980.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
            [Loxodonta africana]
          Length = 1010

 Score =  700 bits (1806), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/487 (70%), Positives = 379/487 (77%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYP KPLVTTR                              
Sbjct: 569  MGVYITNFHVRMDTLAHVLYYPQKPLVTTR------------------------------ 598

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAI  YTGYNQEDSVI+N SAV+RG+FR
Sbjct: 599  ---------------SMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFR 643

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSYK+ ESK+  DQEE FEKP R+TCQGMR+AIYDKLDDDG+IAPG+RVSGDDV+I
Sbjct: 644  SVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVII 703

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT+TLPENEDELE T +R++KRD STFLR SETGIVDQVM+TLN +GYKFCKIRVRSVR
Sbjct: 704  GKTVTLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVR 763

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 764  IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQG 823

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+NKGEIGDATPFNDAVNVQKIS LL EYGY LRGNEV++NG TGRKI +Q+F+GPTY
Sbjct: 824  KVSANKGEIGDATPFNDAVNVQKISNLLSEYGYHLRGNEVLYNGFTGRKITSQIFIGPTY 883

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGP+QIL RQPMEGR+RDGGLRFGEMERDCQI+HGAAQFLRERL
Sbjct: 884  YQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERL 943

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FE SDPY++HVCN CG++AIAN R +T+EC+GC+NKTQIS VR+PYA KLLFQELMSM+I
Sbjct: 944  FEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSI 1003

Query: 445  APRLMVV 451
            APR+M V
Sbjct: 1004 APRMMSV 1010


>gi|431893877|gb|ELK03694.1| DNA-directed RNA polymerase II subunit RPB2 [Pteropus alecto]
          Length = 1167

 Score =  699 bits (1804), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/487 (70%), Positives = 379/487 (77%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYP KPLVTTR                              
Sbjct: 726  MGVYITNFHVRMDTLAHVLYYPQKPLVTTR------------------------------ 755

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAI  YTGYNQEDSVI+N SAV+RG+FR
Sbjct: 756  ---------------SMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFR 800

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSYK+ ESK+  DQEE FEKP R+TCQGMR+AIYDKLDDDG+IAPG+RVSGDDV+I
Sbjct: 801  SVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVII 860

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT+TLPENEDELE T +R++KRD STFLR SETGIVDQVM+TLN +GYKFCKIRVRSVR
Sbjct: 861  GKTVTLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVR 920

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 921  IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQG 980

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+NKGEIGDATPFNDAVNVQKIS LL +YGY LRGNEV++NG TGRKI +Q+F+GPTY
Sbjct: 981  KVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTY 1040

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGP+QIL RQPMEGR+RDGGLRFGEMERDCQI+HGAAQFLRERL
Sbjct: 1041 YQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERL 1100

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FE SDPY++HVCN CG++AIAN R +T+EC+GC+NKTQIS VR+PYA KLLFQELMSM+I
Sbjct: 1101 FEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSI 1160

Query: 445  APRLMVV 451
            APR+M V
Sbjct: 1161 APRMMSV 1167


>gi|403284743|ref|XP_003933716.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
           subunit RPB2, partial [Saimiri boliviensis boliviensis]
          Length = 992

 Score =  699 bits (1804), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/487 (70%), Positives = 379/487 (77%), Gaps = 81/487 (16%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGVYITNFHVRMDTLAHVLYYP KPLVTTR                              
Sbjct: 551 MGVYITNFHVRMDTLAHVLYYPQKPLVTTR------------------------------ 580

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYLRFRELPAGINSIVAI  YTGYNQEDSVI+N SAV+RG+FR
Sbjct: 581 ---------------SMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFR 625

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           SVF+RSYK+ ESK+  DQEE FEKP R+TCQGMR+AIYDKLDDDG+IAPG+RVSGDDV+I
Sbjct: 626 SVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVII 685

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT+TLPENEDELE T +R++KRD STFLR SETGIVDQVM+TLN +GYKFCKIRVRSVR
Sbjct: 686 GKTVTLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVR 745

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 746 IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQG 805

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            VS+NKGEIGDATPFNDAVNVQKIS LL +YGY LRGNEV++NG TGRKI +Q+F+GPTY
Sbjct: 806 KVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTY 865

Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
           YQRLKHMVDDKIHSRARGP+QIL RQPMEGR+RDGGLRFGEMERDCQI+HGAAQFLRERL
Sbjct: 866 YQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERL 925

Query: 385 FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
           FE SDPY++HVCN CG++AIAN R +T+EC+GC+NKTQIS VR+PYA KLLFQELMSM+I
Sbjct: 926 FEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSI 985

Query: 445 APRLMVV 451
           APR+M V
Sbjct: 986 APRMMSV 992


>gi|198418494|ref|XP_002128916.1| PREDICTED: similar to POLR2B protein [Ciona intestinalis]
          Length = 1173

 Score =  699 bits (1804), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/487 (69%), Positives = 374/487 (76%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYP KPLVTTR                              
Sbjct: 732  MGVYITNFHVRMDTLAHVLYYPQKPLVTTR------------------------------ 761

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGIN+IVAI  YTGYNQEDS+I+N S+V+RG+FR
Sbjct: 762  ---------------SMEYLRFRELPAGINAIVAISTYTGYNQEDSIIVNKSSVDRGFFR 806

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSYKDAE+K   DQEE FE+P R  C GMR+AIYDKLDDDG+++PG+RVSGDDVVI
Sbjct: 807  SVFYRSYKDAENKSAYDQEETFERPERSFCTGMRHAIYDKLDDDGLVSPGIRVSGDDVVI 866

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT+ LPENEDELEGTT+RF KRD STFLR SETGIVDQVM+++N DGYKF KIRVRSVR
Sbjct: 867  GKTVMLPENEDELEGTTQRFKKRDVSTFLRTSETGIVDQVMISINQDGYKFTKIRVRSVR 926

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            +PQIGDKFASRHGQKGTCGI YR E                                   
Sbjct: 927  VPQIGDKFASRHGQKGTCGITYRAEDMPFTSEGVQPDLIVNPHAIPSRMTIGHLIECIQG 986

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+NKGEIGDATPFND VNVQKIS LL EYGYQ RGNEV++NGHTGRK+N QVF GPTY
Sbjct: 987  KVSANKGEIGDATPFNDTVNVQKISNLLHEYGYQQRGNEVLYNGHTGRKLNTQVFFGPTY 1046

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQIL RQPMEGR+RDGGLRFGEMERDCQI+HGAAQFLRERL
Sbjct: 1047 YQRLKHMVDDKIHSRARGPVQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERL 1106

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FE SDPYR+HVCN CGLIAIAN+R++TFEC+GCKNKT ISQVR+PYA KLLFQELMSM+I
Sbjct: 1107 FEASDPYRVHVCNLCGLIAIANLRSHTFECRGCKNKTHISQVRMPYACKLLFQELMSMSI 1166

Query: 445  APRLMVV 451
            APR+MV 
Sbjct: 1167 APRMMVT 1173


>gi|297673503|ref|XP_002814800.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 1
            [Pongo abelii]
 gi|410038417|ref|XP_003950400.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Pan
            troglodytes]
          Length = 1167

 Score =  699 bits (1804), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/487 (70%), Positives = 379/487 (77%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYP KPLVTTR                              
Sbjct: 726  MGVYITNFHVRMDTLAHVLYYPQKPLVTTR------------------------------ 755

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAI  YTGYNQEDSVI+N SAV+RG+FR
Sbjct: 756  ---------------SMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFR 800

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSYK+ ESK+  DQEE FEKP R+TCQGMR+AIYDKLDDDG+IAPG+RVSGDDV+I
Sbjct: 801  SVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVII 860

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT+TLPENEDELE T +R++KRD STFLR SETGIVDQVM+TLN +GYKFCKIRVRSVR
Sbjct: 861  GKTVTLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVR 920

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 921  IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQG 980

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+NKGEIGDATPFNDAVNVQKIS LL +YGY LRGNEV++NG TGRKI +Q+F+GPTY
Sbjct: 981  KVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTY 1040

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGP+QIL RQPMEGR+RDGGLRFGEMERDCQI+HGAAQFLRERL
Sbjct: 1041 YQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERL 1100

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FE SDPY++HVCN CG++AIAN R +T+EC+GC+NKTQIS VR+PYA KLLFQELMSM+I
Sbjct: 1101 FEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSI 1160

Query: 445  APRLMVV 451
            APR+M V
Sbjct: 1161 APRMMSV 1167


>gi|126331583|ref|XP_001362455.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Monodelphis
            domestica]
 gi|395542735|ref|XP_003773281.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Sarcophilus
            harrisii]
          Length = 1174

 Score =  699 bits (1803), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/487 (70%), Positives = 379/487 (77%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYP KPLVTTR                              
Sbjct: 733  MGVYITNFHVRMDTLAHVLYYPQKPLVTTR------------------------------ 762

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAI  YTGYNQEDSVI+N SAV+RG+FR
Sbjct: 763  ---------------SMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFR 807

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSYK+ ESK+  DQEE FEKP R+TCQGMR+AIYDKLDDDG+IAPG+RVSGDDV+I
Sbjct: 808  SVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVII 867

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT+TLPENEDELE T +R++KRD STFLR SETGIVDQVM+TLN +GYKFCKIRVRSVR
Sbjct: 868  GKTVTLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVR 927

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 928  IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQG 987

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+NKGEIGDATPFNDAVNVQKIS LL +YGY LRGNEV++NG TGRKI +Q+F+GPTY
Sbjct: 988  KVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTY 1047

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGP+QIL RQPMEGR+RDGGLRFGEMERDCQI+HGAAQFLRERL
Sbjct: 1048 YQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERL 1107

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FE SDPY++HVCN CG++AIAN R +T+EC+GC+NKTQIS VR+PYA KLLFQELMSM+I
Sbjct: 1108 FEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSI 1167

Query: 445  APRLMVV 451
            APR+M V
Sbjct: 1168 APRMMSV 1174


>gi|297673507|ref|XP_002814802.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 3
            [Pongo abelii]
 gi|395851371|ref|XP_003798234.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 2
            [Otolemur garnettii]
 gi|410038419|ref|XP_003950401.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Pan
            troglodytes]
          Length = 1099

 Score =  699 bits (1803), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/487 (70%), Positives = 379/487 (77%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYP KPLVTTR                              
Sbjct: 658  MGVYITNFHVRMDTLAHVLYYPQKPLVTTR------------------------------ 687

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAI  YTGYNQEDSVI+N SAV+RG+FR
Sbjct: 688  ---------------SMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFR 732

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSYK+ ESK+  DQEE FEKP R+TCQGMR+AIYDKLDDDG+IAPG+RVSGDDV+I
Sbjct: 733  SVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVII 792

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT+TLPENEDELE T +R++KRD STFLR SETGIVDQVM+TLN +GYKFCKIRVRSVR
Sbjct: 793  GKTVTLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVR 852

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 853  IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQG 912

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+NKGEIGDATPFNDAVNVQKIS LL +YGY LRGNEV++NG TGRKI +Q+F+GPTY
Sbjct: 913  KVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTY 972

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGP+QIL RQPMEGR+RDGGLRFGEMERDCQI+HGAAQFLRERL
Sbjct: 973  YQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERL 1032

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FE SDPY++HVCN CG++AIAN R +T+EC+GC+NKTQIS VR+PYA KLLFQELMSM+I
Sbjct: 1033 FEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSI 1092

Query: 445  APRLMVV 451
            APR+M V
Sbjct: 1093 APRMMSV 1099


>gi|4505941|ref|NP_000929.1| DNA-directed RNA polymerase II subunit RPB2 [Homo sapiens]
 gi|157822127|ref|NP_001099472.1| DNA-directed RNA polymerase II subunit RPB2 [Rattus norvegicus]
 gi|387849108|ref|NP_001248426.1| DNA-directed RNA polymerase II subunit RPB2 [Macaca mulatta]
 gi|114594586|ref|XP_517275.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 2 [Pan
            troglodytes]
 gi|296196473|ref|XP_002745851.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Callithrix
            jacchus]
 gi|297673513|ref|XP_002814803.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 4
            [Pongo abelii]
 gi|332238537|ref|XP_003268457.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Nomascus
            leucogenys]
 gi|348571889|ref|XP_003471727.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Cavia
            porcellus]
 gi|354498860|ref|XP_003511530.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
            [Cricetulus griseus]
 gi|395851369|ref|XP_003798233.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 1
            [Otolemur garnettii]
 gi|402869719|ref|XP_003898895.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 1
            [Papio anubis]
 gi|401012|sp|P30876.1|RPB2_HUMAN RecName: Full=DNA-directed RNA polymerase II subunit RPB2; AltName:
            Full=DNA-directed RNA polymerase II 140 kDa polypeptide;
            AltName: Full=DNA-directed RNA polymerase II subunit B;
            AltName: Full=RNA polymerase II subunit 2; AltName:
            Full=RNA polymerase II subunit B2
 gi|36122|emb|CAA45124.1| RNA polymerase II 140 kDa subunit [Homo sapiens]
 gi|254869|gb|AAB23139.1| RNA polymerase II second largest subunit, RNA polymerase B second
            largest subunit [human, HeLa cells, Peptide, 1174 aa]
 gi|33870592|gb|AAH23503.2| Polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Homo
            sapiens]
 gi|119625924|gb|EAX05519.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Homo
            sapiens]
 gi|149035168|gb|EDL89872.1| polymerase (RNA) II (DNA directed) polypeptide B (predicted) [Rattus
            norvegicus]
 gi|158260669|dbj|BAF82512.1| unnamed protein product [Homo sapiens]
 gi|168277428|dbj|BAG10692.1| DNA-directed RNA polymerase II subunit RPB2 [synthetic construct]
 gi|355749385|gb|EHH53784.1| DNA-directed RNA polymerase II subunit RPB2 [Macaca fascicularis]
 gi|380783295|gb|AFE63523.1| DNA-directed RNA polymerase II subunit RPB2 [Macaca mulatta]
 gi|383413177|gb|AFH29802.1| DNA-directed RNA polymerase II subunit RPB2 [Macaca mulatta]
 gi|384941246|gb|AFI34228.1| DNA-directed RNA polymerase II subunit RPB2 [Macaca mulatta]
 gi|410224966|gb|JAA09702.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Pan
            troglodytes]
 gi|410261216|gb|JAA18574.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Pan
            troglodytes]
 gi|410306896|gb|JAA32048.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Pan
            troglodytes]
 gi|410306898|gb|JAA32049.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Pan
            troglodytes]
 gi|410306900|gb|JAA32050.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Pan
            troglodytes]
 gi|410350135|gb|JAA41671.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Pan
            troglodytes]
          Length = 1174

 Score =  699 bits (1803), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/487 (70%), Positives = 379/487 (77%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYP KPLVTTR                              
Sbjct: 733  MGVYITNFHVRMDTLAHVLYYPQKPLVTTR------------------------------ 762

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAI  YTGYNQEDSVI+N SAV+RG+FR
Sbjct: 763  ---------------SMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFR 807

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSYK+ ESK+  DQEE FEKP R+TCQGMR+AIYDKLDDDG+IAPG+RVSGDDV+I
Sbjct: 808  SVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVII 867

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT+TLPENEDELE T +R++KRD STFLR SETGIVDQVM+TLN +GYKFCKIRVRSVR
Sbjct: 868  GKTVTLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVR 927

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 928  IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQG 987

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+NKGEIGDATPFNDAVNVQKIS LL +YGY LRGNEV++NG TGRKI +Q+F+GPTY
Sbjct: 988  KVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTY 1047

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGP+QIL RQPMEGR+RDGGLRFGEMERDCQI+HGAAQFLRERL
Sbjct: 1048 YQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERL 1107

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FE SDPY++HVCN CG++AIAN R +T+EC+GC+NKTQIS VR+PYA KLLFQELMSM+I
Sbjct: 1108 FEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSI 1167

Query: 445  APRLMVV 451
            APR+M V
Sbjct: 1168 APRMMSV 1174


>gi|387018202|gb|AFJ51219.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Crotalus
            adamanteus]
          Length = 1167

 Score =  699 bits (1803), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/487 (70%), Positives = 380/487 (78%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYP KPLVTTR                              
Sbjct: 726  MGVYITNFHVRMDTLAHVLYYPQKPLVTTR------------------------------ 755

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAI  YTGYNQEDSVI+N SAV+RG+FR
Sbjct: 756  ---------------SMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFR 800

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSYK+ ESK+  DQEE FEKP+R+TCQGMR+AIYDKLDDDG+IAPG+RVSGDDV+I
Sbjct: 801  SVFYRSYKEQESKKGYDQEEVFEKPSRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVII 860

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT+TLPENEDELE T +R++KRD STFLR SETGIVDQVM+TLN +GYKFCKIRVRSVR
Sbjct: 861  GKTVTLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMITLNQEGYKFCKIRVRSVR 920

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 921  IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQG 980

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+NKGEIGDATPFNDAVNVQKIS LL +YGY LRGNEV++NG TGRKI +Q+F+GPTY
Sbjct: 981  KVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTY 1040

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGP+QIL RQPMEGR+RDGGLRFGEMERDCQI+HGAAQFLRERL
Sbjct: 1041 YQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERL 1100

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FE SDPY++HVCN CGL+AIAN R +T+EC+GC+NKTQIS VR+PYA KLLFQELMSM+I
Sbjct: 1101 FEASDPYQVHVCNLCGLMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSI 1160

Query: 445  APRLMVV 451
            APR++ V
Sbjct: 1161 APRMLSV 1167


>gi|194209129|ref|XP_001916826.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
            subunit RPB2-like [Equus caballus]
          Length = 1174

 Score =  699 bits (1803), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/487 (70%), Positives = 379/487 (77%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYP KPLVTTR                              
Sbjct: 733  MGVYITNFHVRMDTLAHVLYYPQKPLVTTR------------------------------ 762

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAI  YTGYNQEDSVI+N SAV+RG+FR
Sbjct: 763  ---------------SMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFR 807

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSYK+ ESK+  DQEE FEKP R+TCQGMR+AIYDKLDDDG+IAPG+RVSGDDV+I
Sbjct: 808  SVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVII 867

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT+TLPENEDELE T +R++KRD STFLR SETGIVDQVM+TLN +GYKFCKIRVRSVR
Sbjct: 868  GKTVTLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVR 927

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 928  IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQG 987

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+NKGEIGDATPFNDAVNVQKIS LL +YGY LRGNEV++NG TGRKI +Q+F+GPTY
Sbjct: 988  KVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTY 1047

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGP+QIL RQPMEGR+RDGGLRFGEMERDCQI+HGAAQFLRERL
Sbjct: 1048 YQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERL 1107

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FE SDPY++HVCN CG++AIAN R +T+EC+GC+NKTQIS VR+PYA KLLFQELMSM+I
Sbjct: 1108 FEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSI 1167

Query: 445  APRLMVV 451
            APR+M V
Sbjct: 1168 APRMMSV 1174


>gi|426344421|ref|XP_004038768.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Gorilla
            gorilla gorilla]
          Length = 1097

 Score =  698 bits (1802), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/487 (70%), Positives = 379/487 (77%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYP KPLVTTR                              
Sbjct: 656  MGVYITNFHVRMDTLAHVLYYPQKPLVTTR------------------------------ 685

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAI  YTGYNQEDSVI+N SAV+RG+FR
Sbjct: 686  ---------------SMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFR 730

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSYK+ ESK+  DQEE FEKP R+TCQGMR+AIYDKLDDDG+IAPG+RVSGDDV+I
Sbjct: 731  SVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVII 790

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT+TLPENEDELE T +R++KRD STFLR SETGIVDQVM+TLN +GYKFCKIRVRSVR
Sbjct: 791  GKTVTLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVR 850

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 851  IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQG 910

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+NKGEIGDATPFNDAVNVQKIS LL +YGY LRGNEV++NG TGRKI +Q+F+GPTY
Sbjct: 911  KVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTY 970

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGP+QIL RQPMEGR+RDGGLRFGEMERDCQI+HGAAQFLRERL
Sbjct: 971  YQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERL 1030

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FE SDPY++HVCN CG++AIAN R +T+EC+GC+NKTQIS VR+PYA KLLFQELMSM+I
Sbjct: 1031 FEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSI 1090

Query: 445  APRLMVV 451
            APR+M V
Sbjct: 1091 APRMMSV 1097


>gi|417413545|gb|JAA53095.1| Putative rna polymerase i second largest subunit, partial [Desmodus
            rotundus]
          Length = 1144

 Score =  698 bits (1802), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/487 (70%), Positives = 379/487 (77%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYP KPLVTTR                              
Sbjct: 703  MGVYITNFHVRMDTLAHVLYYPQKPLVTTR------------------------------ 732

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAI  YTGYNQEDSVI+N SAV+RG+FR
Sbjct: 733  ---------------SMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFR 777

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSYK+ ESK+  DQEE FEKP R+TCQGMR+AIYDKLDDDG+IAPG+RVSGDDV+I
Sbjct: 778  SVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVII 837

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT+TLPENEDELE T +R++KRD STFLR SETGIVDQVM+TLN +GYKFCKIRVRSVR
Sbjct: 838  GKTVTLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVR 897

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 898  IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQG 957

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+NKGEIGDATPFNDAVNVQKIS LL +YGY LRGNEV++NG TGRKI +Q+F+GPTY
Sbjct: 958  KVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTY 1017

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGP+QIL RQPMEGR+RDGGLRFGEMERDCQI+HGAAQFLRERL
Sbjct: 1018 YQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERL 1077

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FE SDPY++HVCN CG++AIAN R +T+EC+GC+NKTQIS VR+PYA KLLFQELMSM+I
Sbjct: 1078 FEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSI 1137

Query: 445  APRLMVV 451
            APR+M V
Sbjct: 1138 APRMMSV 1144


>gi|402869721|ref|XP_003898896.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 2
            [Papio anubis]
          Length = 1083

 Score =  698 bits (1802), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/487 (70%), Positives = 379/487 (77%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYP KPLVTTR                              
Sbjct: 642  MGVYITNFHVRMDTLAHVLYYPQKPLVTTR------------------------------ 671

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAI  YTGYNQEDSVI+N SAV+RG+FR
Sbjct: 672  ---------------SMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFR 716

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSYK+ ESK+  DQEE FEKP R+TCQGMR+AIYDKLDDDG+IAPG+RVSGDDV+I
Sbjct: 717  SVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVII 776

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT+TLPENEDELE T +R++KRD STFLR SETGIVDQVM+TLN +GYKFCKIRVRSVR
Sbjct: 777  GKTVTLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVR 836

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 837  IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQG 896

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+NKGEIGDATPFNDAVNVQKIS LL +YGY LRGNEV++NG TGRKI +Q+F+GPTY
Sbjct: 897  KVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTY 956

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGP+QIL RQPMEGR+RDGGLRFGEMERDCQI+HGAAQFLRERL
Sbjct: 957  YQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERL 1016

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FE SDPY++HVCN CG++AIAN R +T+EC+GC+NKTQIS VR+PYA KLLFQELMSM+I
Sbjct: 1017 FEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSI 1076

Query: 445  APRLMVV 451
            APR+M V
Sbjct: 1077 APRMMSV 1083


>gi|194379208|dbj|BAG58155.1| unnamed protein product [Homo sapiens]
          Length = 1167

 Score =  698 bits (1802), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/487 (70%), Positives = 379/487 (77%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYP KPLVTTR                              
Sbjct: 726  MGVYITNFHVRMDTLAHVLYYPQKPLVTTR------------------------------ 755

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAI  YTGYNQEDSVI+N SAV+RG+FR
Sbjct: 756  ---------------SMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFR 800

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSYK+ ESK+  DQEE FEKP R+TCQGMR+AIYDKLDDDG+IAPG+RVSGDDV+I
Sbjct: 801  SVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVII 860

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT+TLPENEDELE T +R++KRD STFLR SETGIVDQVM+TLN +GYKFCKIRVRSVR
Sbjct: 861  GKTVTLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVR 920

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 921  IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQG 980

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+NKGEIGDATPFNDAVNVQKIS LL +YGY LRGNEV++NG TGRKI +Q+F+GPTY
Sbjct: 981  KVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTY 1040

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGP+QIL RQPMEGR+RDGGLRFGEMERDCQI+HGAAQFLRERL
Sbjct: 1041 YQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERL 1100

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FE SDPY++HVCN CG++AIAN R +T+EC+GC+NKTQIS VR+PYA KLLFQELMSM+I
Sbjct: 1101 FEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSI 1160

Query: 445  APRLMVV 451
            APR+M V
Sbjct: 1161 APRMMSV 1167


>gi|327279896|ref|XP_003224691.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Anolis
            carolinensis]
          Length = 1174

 Score =  698 bits (1801), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/487 (70%), Positives = 379/487 (77%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYP KPLVTTR                              
Sbjct: 733  MGVYITNFHVRMDTLAHVLYYPQKPLVTTR------------------------------ 762

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAI  YTGYNQEDSVI+N SAV+RG+FR
Sbjct: 763  ---------------SMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFR 807

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSYK+ ESK+  DQEE FEKP R+TCQGMR+AIYDKLDDDG+IAPG+RVSGDDV+I
Sbjct: 808  SVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVII 867

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT+TLPENEDELE T +R++KRD STFLR SETGIVDQVM+TLN +GYKFCKI+VRSVR
Sbjct: 868  GKTVTLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIKVRSVR 927

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 928  IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQG 987

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+NKGEIGDATPFNDAVNVQKIS LL +YGY LRGNEV++NG TGRKI +Q+F+GPTY
Sbjct: 988  KVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTY 1047

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGP+QIL RQPMEGR+RDGGLRFGEMERDCQI+HGAAQFLRERL
Sbjct: 1048 YQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERL 1107

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FE SDPY++HVCN CGL+AIAN R +T+EC+GC+NKTQIS VR+PYA KLLFQELMSM+I
Sbjct: 1108 FEASDPYQVHVCNLCGLMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSI 1167

Query: 445  APRLMVV 451
            APR+M V
Sbjct: 1168 APRMMSV 1174


>gi|397469837|ref|XP_003806546.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Pan paniscus]
          Length = 1226

 Score =  697 bits (1800), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/487 (70%), Positives = 379/487 (77%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYP KPLVTTR                              
Sbjct: 785  MGVYITNFHVRMDTLAHVLYYPQKPLVTTR------------------------------ 814

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAI  YTGYNQEDSVI+N SAV+RG+FR
Sbjct: 815  ---------------SMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFR 859

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSYK+ ESK+  DQEE FEKP R+TCQGMR+AIYDKLDDDG+IAPG+RVSGDDV+I
Sbjct: 860  SVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVII 919

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT+TLPENEDELE T +R++KRD STFLR SETGIVDQVM+TLN +GYKFCKIRVRSVR
Sbjct: 920  GKTVTLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVR 979

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 980  IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQG 1039

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+NKGEIGDATPFNDAVNVQKIS LL +YGY LRGNEV++NG TGRKI +Q+F+GPTY
Sbjct: 1040 KVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTY 1099

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGP+QIL RQPMEGR+RDGGLRFGEMERDCQI+HGAAQFLRERL
Sbjct: 1100 YQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERL 1159

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FE SDPY++HVCN CG++AIAN R +T+EC+GC+NKTQIS VR+PYA KLLFQELMSM+I
Sbjct: 1160 FEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSI 1219

Query: 445  APRLMVV 451
            APR+M V
Sbjct: 1220 APRMMSV 1226


>gi|344247350|gb|EGW03454.1| DNA-directed RNA polymerase II subunit RPB2 [Cricetulus griseus]
          Length = 807

 Score =  697 bits (1800), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/487 (70%), Positives = 379/487 (77%), Gaps = 81/487 (16%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGVYITNFHVRMDTLAHVLYYP KPLVTTR                              
Sbjct: 366 MGVYITNFHVRMDTLAHVLYYPQKPLVTTR------------------------------ 395

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYLRFRELPAGINSIVAI  YTGYNQEDSVI+N SAV+RG+FR
Sbjct: 396 ---------------SMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFR 440

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           SVF+RSYK+ ESK+  DQEE FEKP R+TCQGMR+AIYDKLDDDG+IAPG+RVSGDDV+I
Sbjct: 441 SVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVII 500

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT+TLPENEDELE T +R++KRD STFLR SETGIVDQVM+TLN +GYKFCKIRVRSVR
Sbjct: 501 GKTVTLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVR 560

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 561 IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQG 620

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            VS+NKGEIGDATPFNDAVNVQKIS LL +YGY LRGNEV++NG TGRKI +Q+F+GPTY
Sbjct: 621 KVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTY 680

Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
           YQRLKHMVDDKIHSRARGP+QIL RQPMEGR+RDGGLRFGEMERDCQI+HGAAQFLRERL
Sbjct: 681 YQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERL 740

Query: 385 FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
           FE SDPY++HVCN CG++AIAN R +T+EC+GC+NKTQIS VR+PYA KLLFQELMSM+I
Sbjct: 741 FEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSI 800

Query: 445 APRLMVV 451
           APR+M V
Sbjct: 801 APRMMSV 807


>gi|23512288|gb|AAH38472.1| Polymerase (RNA) II (DNA directed) polypeptide B [Mus musculus]
          Length = 1167

 Score =  697 bits (1800), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/487 (69%), Positives = 379/487 (77%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYP KPLVTTR                              
Sbjct: 726  MGVYITNFHVRMDTLAHVLYYPQKPLVTTR------------------------------ 755

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAI  YTGYNQEDSVI+N SAV+RG+FR
Sbjct: 756  ---------------SMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFR 800

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSYK+ ESK+  DQEE FEKP R+TCQGMR+AIY+KLDDDG+IAPG+RVSGDDV+I
Sbjct: 801  SVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYEKLDDDGLIAPGVRVSGDDVII 860

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT+TLPENEDELE T +R++KRD STFLR SETGIVDQVM+TLN +GYKFCKIRVRSVR
Sbjct: 861  GKTVTLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVR 920

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 921  IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQG 980

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+NKGEIGDATPFNDAVNVQKIS LL +YGY LRGNEV++NG TGRKI +Q+F+GPTY
Sbjct: 981  KVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTY 1040

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGP+QIL RQPMEGR+RDGGLRFGEMERDCQI+HGAAQFLRERL
Sbjct: 1041 YQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERL 1100

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FE SDPY++HVCN CG++AIAN R +T+EC+GC+NKTQIS VR+PYA KLLFQELMSM+I
Sbjct: 1101 FEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSI 1160

Query: 445  APRLMVV 451
            APR+M V
Sbjct: 1161 APRMMSV 1167


>gi|226958589|ref|NP_722493.2| DNA-directed RNA polymerase II subunit RPB2 [Mus musculus]
 gi|51702009|sp|Q8CFI7.2|RPB2_MOUSE RecName: Full=DNA-directed RNA polymerase II subunit RPB2; AltName:
            Full=DNA-directed RNA polymerase II 140 kDa polypeptide;
            AltName: Full=DNA-directed RNA polymerase II subunit B;
            AltName: Full=RNA polymerase II subunit 2; AltName:
            Full=RNA polymerase II subunit B2
 gi|148705989|gb|EDL37936.1| polymerase (RNA) II (DNA directed) polypeptide B [Mus musculus]
          Length = 1174

 Score =  697 bits (1800), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/487 (69%), Positives = 379/487 (77%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYP KPLVTTR                              
Sbjct: 733  MGVYITNFHVRMDTLAHVLYYPQKPLVTTR------------------------------ 762

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAI  YTGYNQEDSVI+N SAV+RG+FR
Sbjct: 763  ---------------SMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFR 807

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSYK+ ESK+  DQEE FEKP R+TCQGMR+AIY+KLDDDG+IAPG+RVSGDDV+I
Sbjct: 808  SVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYEKLDDDGLIAPGVRVSGDDVII 867

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT+TLPENEDELE T +R++KRD STFLR SETGIVDQVM+TLN +GYKFCKIRVRSVR
Sbjct: 868  GKTVTLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVR 927

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 928  IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQG 987

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+NKGEIGDATPFNDAVNVQKIS LL +YGY LRGNEV++NG TGRKI +Q+F+GPTY
Sbjct: 988  KVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTY 1047

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGP+QIL RQPMEGR+RDGGLRFGEMERDCQI+HGAAQFLRERL
Sbjct: 1048 YQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERL 1107

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FE SDPY++HVCN CG++AIAN R +T+EC+GC+NKTQIS VR+PYA KLLFQELMSM+I
Sbjct: 1108 FEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSI 1167

Query: 445  APRLMVV 451
            APR+M V
Sbjct: 1168 APRMMSV 1174


>gi|355687402|gb|EHH25986.1| DNA-directed RNA polymerase II subunit RPB2 [Macaca mulatta]
          Length = 1174

 Score =  697 bits (1798), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/487 (69%), Positives = 378/487 (77%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYP KPLVTTR                              
Sbjct: 733  MGVYITNFHVRMDTLAHVLYYPQKPLVTTR------------------------------ 762

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAI  YTGYNQEDSVI+N SAV+RG+FR
Sbjct: 763  ---------------SMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFR 807

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSYK+ ESK+  DQEE FEKP R+TCQGMR+AIYDKLDDDG+IAPG+RVSGDDV+I
Sbjct: 808  SVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVII 867

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT+TLPENEDELE T +R++KRD STFLR SETGIVDQVM+TLN +GYKFCKIRVRSVR
Sbjct: 868  GKTVTLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVR 927

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 928  IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQG 987

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+NKGEIGDATPFNDAVNVQKIS LL +YGY LRG EV++NG TGRKI +Q+F+GPTY
Sbjct: 988  KVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGKEVLYNGFTGRKITSQIFIGPTY 1047

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGP+QIL RQPMEGR+RDGGLRFGEMERDCQI+HGAAQFLRERL
Sbjct: 1048 YQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERL 1107

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FE SDPY++HVCN CG++AIAN R +T+EC+GC+NKTQIS VR+PYA KLLFQELMSM+I
Sbjct: 1108 FEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSI 1167

Query: 445  APRLMVV 451
            APR+M V
Sbjct: 1168 APRMMSV 1174


>gi|194378878|dbj|BAG57990.1| unnamed protein product [Homo sapiens]
          Length = 1099

 Score =  697 bits (1798), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/487 (69%), Positives = 378/487 (77%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYP KPLVTTR                              
Sbjct: 658  MGVYITNFHVRMDTLAHVLYYPQKPLVTTR------------------------------ 687

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAI  YTGYNQEDSVI+N SAV+R +FR
Sbjct: 688  ---------------SMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRSFFR 732

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSYK+ ESK+  DQEE FEKP R+TCQGMR+AIYDKLDDDG+IAPG+RVSGDDV+I
Sbjct: 733  SVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVII 792

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT+TLPENEDELE T +R++KRD STFLR SETGIVDQVM+TLN +GYKFCKIRVRSVR
Sbjct: 793  GKTVTLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVR 852

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 853  IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQG 912

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+NKGEIGDATPFNDAVNVQKIS LL +YGY LRGNEV++NG TGRKI +Q+F+GPTY
Sbjct: 913  KVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTY 972

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGP+QIL RQPMEGR+RDGGLRFGEMERDCQI+HGAAQFLRERL
Sbjct: 973  YQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERL 1032

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FE SDPY++HVCN CG++AIAN R +T+EC+GC+NKTQIS VR+PYA KLLFQELMSM+I
Sbjct: 1033 FEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSI 1092

Query: 445  APRLMVV 451
            APR+M V
Sbjct: 1093 APRMMSV 1099


>gi|194386684|dbj|BAG61152.1| unnamed protein product [Homo sapiens]
          Length = 1083

 Score =  696 bits (1796), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/487 (69%), Positives = 378/487 (77%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYP KPLVTTR                              
Sbjct: 642  MGVYITNFHVRMDTLAHVLYYPQKPLVTTR------------------------------ 671

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAI  YTGYNQEDSVI+N SAV+RG+FR
Sbjct: 672  ---------------SMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFR 716

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSYK+ ESK+  DQEE FEKP R+TCQGMR+AIYDKLDDDG+IAPG+RVSGDDV+I
Sbjct: 717  SVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVII 776

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
             KT+TLPENEDELE T +R++KRD STFLR SETGIVDQVM+TLN +GYKFCKIRVRSVR
Sbjct: 777  SKTVTLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVR 836

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 837  IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQG 896

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+NKGEIGDATPFNDAVNVQKIS LL +YGY LRGNEV++NG TGRKI +Q+F+GPTY
Sbjct: 897  KVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTY 956

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGP+QIL RQPMEGR+RDGGLRFGEMERDCQI+HGAAQFLRERL
Sbjct: 957  YQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERL 1016

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FE SDPY++HVCN CG++AIAN R +T+EC+GC+NKTQIS VR+PYA KLLFQELMSM+I
Sbjct: 1017 FEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSI 1076

Query: 445  APRLMVV 451
            APR+M V
Sbjct: 1077 APRMMSV 1083


>gi|348542471|ref|XP_003458708.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Oreochromis
            niloticus]
          Length = 1174

 Score =  694 bits (1792), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/486 (69%), Positives = 378/486 (77%), Gaps = 81/486 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYP KPLVTTR                              
Sbjct: 733  MGVYITNFHVRMDTLAHVLYYPQKPLVTTR------------------------------ 762

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAI  YTGYNQEDSVI+N SAV+RG+FR
Sbjct: 763  ---------------SMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFR 807

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSYK+ ESK+  DQEE FEKP R+TCQGMR+AIYDKLDDDG+IAPG+RVSG+DV+I
Sbjct: 808  SVFYRSYKEQESKKGFDQEEIFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGEDVII 867

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT+TLPEN+DEL+ T +R++KRD STFLR SETGIVDQVM+TLN +GYKFCKIRVRSVR
Sbjct: 868  GKTVTLPENDDELDSTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVR 927

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 928  IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTVGHLIECLQG 987

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+NKGEIGDATPFNDAVNVQK+S LL EYGY LRGNEV++NG TGRK+ +Q+F+GPTY
Sbjct: 988  KVSANKGEIGDATPFNDAVNVQKVSNLLSEYGYHLRGNEVLYNGFTGRKLTSQIFIGPTY 1047

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQIL RQPMEGR+RDGGLRFGEMERDCQI+HGAAQFLRERL
Sbjct: 1048 YQRLKHMVDDKIHSRARGPVQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERL 1107

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FE SDPY++HVCN CGL+AIAN R +T+EC+GC+NKTQIS VR+PYA KLLFQELMSM+I
Sbjct: 1108 FEASDPYQVHVCNLCGLMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSI 1167

Query: 445  APRLMV 450
            APR+M 
Sbjct: 1168 APRMMT 1173


>gi|340382420|ref|XP_003389717.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Amphimedon
            queenslandica]
          Length = 1175

 Score =  694 bits (1791), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/487 (69%), Positives = 371/487 (76%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITN+HVRMDTLAHVLYYP KPLVTTR                              
Sbjct: 732  MGVYITNYHVRMDTLAHVLYYPQKPLVTTR------------------------------ 761

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGIN+IVAI  YTGYNQEDSVI+NASA++RG FR
Sbjct: 762  ---------------SMEYLRFRELPAGINAIVAIASYTGYNQEDSVIMNASAIDRGLFR 806

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSYKD ESKR  DQEE FEKP R TC GMRNA YDKLD+DGIIAPGLRVSG+D +I
Sbjct: 807  SVFYRSYKDEESKRGFDQEEVFEKPTRDTCAGMRNAAYDKLDEDGIIAPGLRVSGNDAII 866

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKTI+LPEN+DELEG  KR+ KRD STFLR SETGI+DQVML+LN DGYKFCKIRVRSVR
Sbjct: 867  GKTISLPENDDELEGAPKRYQKRDASTFLRASETGIIDQVMLSLNQDGYKFCKIRVRSVR 926

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            +PQIGDKFASRHGQKGTCGI YRQE                                   
Sbjct: 927  VPQIGDKFASRHGQKGTCGITYRQEDMPFTCEGLSPDVIINPHAIPSRMTIGHLIECLQG 986

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+NKGEIGDATPFNDAVNVQKIS LL EY Y LRGNEV++NGHTGRK+N QVFLGPTY
Sbjct: 987  KVSANKGEIGDATPFNDAVNVQKISELLNEYNYHLRGNEVLYNGHTGRKLNTQVFLGPTY 1046

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQIL RQPMEGR+RDGGLRFGEMERDCQI+HGAAQFL ERL
Sbjct: 1047 YQRLKHMVDDKIHSRARGPVQILTRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLHERL 1106

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            + VSD Y+IH+CN CGLIAIAN++ N+FEC+GCKNKTQISQ+ +PYA KLLFQELMSM+I
Sbjct: 1107 YTVSDAYKIHLCNLCGLIAIANLQTNSFECRGCKNKTQISQIEIPYACKLLFQELMSMSI 1166

Query: 445  APRLMVV 451
            APR+M  
Sbjct: 1167 APRIMTA 1173


>gi|443726751|gb|ELU13810.1| hypothetical protein CAPTEDRAFT_172112 [Capitella teleta]
          Length = 1174

 Score =  694 bits (1791), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/487 (69%), Positives = 378/487 (77%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITN+HVRMDTLAHVL+YP KPLVTTR                              
Sbjct: 733  MGVYITNYHVRMDTLAHVLFYPQKPLVTTR------------------------------ 762

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGIN+IVAI  YTGYNQEDSVILN  AV+RG+FR
Sbjct: 763  ---------------SMEYLRFRELPAGINAIVAIASYTGYNQEDSVILNEGAVDRGFFR 807

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSYKD+ESK+  DQEE FE+P+    QGMR A+YDKLDDDGIIAPG RVSGDDV+I
Sbjct: 808  SVFYRSYKDSESKKGLDQEELFERPDPNHVQGMRMAVYDKLDDDGIIAPGTRVSGDDVLI 867

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT+TLPENEDEL+   KRF+KRD S F+R SETGI+DQVM+T+N +GYKFCKIRVR+V+
Sbjct: 868  GKTLTLPENEDELDAQAKRFTKRDCSVFMRRSETGIIDQVMVTINQEGYKFCKIRVRTVK 927

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
             PQIGDKFASRHGQKGTCGI+YRQE                                   
Sbjct: 928  TPQIGDKFASRHGQKGTCGIRYRQEDMPFTCEGITPDIIINPHAIPSRMTVGHLIECLQG 987

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+NKGEIGDATPFNDAVNV+KIS LLQ+YGY LRGNEV+FNGHTGRK+NAQ+F+GPTY
Sbjct: 988  KVSANKGEIGDATPFNDAVNVRKISDLLQDYGYHLRGNEVLFNGHTGRKLNAQIFIGPTY 1047

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQIL RQPMEGR+RDGGLRFGEMERDCQI+HGAAQFL+ERL
Sbjct: 1048 YQRLKHMVDDKIHSRARGPVQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLKERL 1107

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FE+SDPYR+HVCN CGLIAIAN+RNNTFEC+GCKNKTQISQVR+PYA KLLFQELMSM+I
Sbjct: 1108 FEISDPYRVHVCNICGLIAIANLRNNTFECRGCKNKTQISQVRMPYACKLLFQELMSMSI 1167

Query: 445  APRLMVV 451
            APR+M+ 
Sbjct: 1168 APRMMIT 1174


>gi|90079569|dbj|BAE89464.1| unnamed protein product [Macaca fascicularis]
          Length = 501

 Score =  694 bits (1790), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/487 (70%), Positives = 379/487 (77%), Gaps = 81/487 (16%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGVYITNFHVRMDTLAHVLYYP KPLVTTR                              
Sbjct: 60  MGVYITNFHVRMDTLAHVLYYPQKPLVTTR------------------------------ 89

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYLRFRELPAGINSIVAI  YTGYNQEDSVI+N SAV+RG+FR
Sbjct: 90  ---------------SMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFR 134

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           SVF+RSYK+ ESK+  DQEE FEKP R+TCQGMR+AIYDKLDDDG+IAPG+RVSGDDV+I
Sbjct: 135 SVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVII 194

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT+TLPENEDELE T +R++KRD STFLR SETGIVDQVM+TLN +GYKFCKIRVRSVR
Sbjct: 195 GKTVTLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVR 254

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 255 IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQG 314

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            VS+NKGEIGDATPFNDAVNVQKIS LL +YGY LRGNEV++NG TGRKI +Q+F+GPTY
Sbjct: 315 KVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTY 374

Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
           YQRLKHMVDDKIHSRARGP+QIL RQPMEGR+RDGGLRFGEMERDCQI+HGAAQFLRERL
Sbjct: 375 YQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERL 434

Query: 385 FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
           FE SDPY++HVCN CG++AIAN R +T+EC+GC+NKTQIS VR+PYA KLLFQELMSM+I
Sbjct: 435 FEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSI 494

Query: 445 APRLMVV 451
           APR+M V
Sbjct: 495 APRMMSV 501


>gi|432961296|ref|XP_004086596.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
            subunit RPB2-like [Oryzias latipes]
          Length = 1120

 Score =  694 bits (1790), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/486 (69%), Positives = 378/486 (77%), Gaps = 81/486 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYP KPLVTTR                              
Sbjct: 679  MGVYITNFHVRMDTLAHVLYYPQKPLVTTR------------------------------ 708

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAI  YTGYNQEDSVI+N SAV+RG+FR
Sbjct: 709  ---------------SMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFR 753

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSYK+ ESK+  DQEE FEKP R+TCQGMR+AIYDKLDDDG+IAPG+RVSG+DV+I
Sbjct: 754  SVFYRSYKEQESKKGFDQEEIFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGEDVII 813

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT+TLPEN+DEL+ T KR++KRD STFLR SETGIVDQVM+TLN +GYKFCKIRVRSVR
Sbjct: 814  GKTVTLPENDDELDSTNKRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVR 873

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 874  IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTVGHLIECLQG 933

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+NKGEIGDATPFNDAVNVQK+S LL EYGY LRGNEV++NG TGRK+ +Q+F+GPTY
Sbjct: 934  KVSANKGEIGDATPFNDAVNVQKVSNLLSEYGYHLRGNEVLYNGFTGRKLTSQIFIGPTY 993

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQIL RQPMEGR+RDGGLRFGEMERDCQI+HGAAQFL+ERL
Sbjct: 994  YQRLKHMVDDKIHSRARGPVQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLKERL 1053

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FE SDPY++HVCN CGL+AIAN R +T+EC+GC+NKTQIS +R+PYA KLLFQELMSM+I
Sbjct: 1054 FEASDPYQVHVCNLCGLMAIANTRTHTYECRGCRNKTQISLIRMPYACKLLFQELMSMSI 1113

Query: 445  APRLMV 450
            APR+M 
Sbjct: 1114 APRMMT 1119


>gi|410932093|ref|XP_003979428.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like,
           partial [Takifugu rubripes]
          Length = 982

 Score =  693 bits (1789), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/486 (69%), Positives = 378/486 (77%), Gaps = 81/486 (16%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGVYITNFHVRMDTLAHVLYYP KPLVTTR                              
Sbjct: 541 MGVYITNFHVRMDTLAHVLYYPQKPLVTTR------------------------------ 570

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYLRFRELPAGINSIVAI  YTGYNQEDSVI+N SAV+RG+FR
Sbjct: 571 ---------------SMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFR 615

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           SVF+RSYK+ ESK+  DQEE FEKP R+TCQGMR+AIY+KLDDDG+IAPG+RVSG+DV+I
Sbjct: 616 SVFYRSYKEQESKKGFDQEEIFEKPTRETCQGMRHAIYEKLDDDGLIAPGVRVSGEDVII 675

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT+TLP+NEDELE T +R++KRD STFLR SETGIVDQVM+TLN +GYKFCKIRVRSVR
Sbjct: 676 GKTVTLPDNEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVR 735

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 736 IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTVGHLIECLQG 795

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            VS+NKGEIGDATPFNDAVNVQK+S LL EYGY LRGNEV++NG TGRK+ +Q+F+GPTY
Sbjct: 796 KVSANKGEIGDATPFNDAVNVQKVSNLLSEYGYHLRGNEVLYNGFTGRKLTSQIFIGPTY 855

Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
           YQRLKHMVDDKIHSRARGPVQIL RQPMEGR+RDGGLRFGEMERDCQI+HGAAQFL+ERL
Sbjct: 856 YQRLKHMVDDKIHSRARGPVQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLKERL 915

Query: 385 FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
           FE SDPY++HVCN CGL+AIAN R +T+EC+GC+NKTQIS VR+PYA KLLFQELMSM+I
Sbjct: 916 FEASDPYQVHVCNLCGLMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSI 975

Query: 445 APRLMV 450
           APR+M 
Sbjct: 976 APRMMT 981


>gi|3005758|gb|AAC09367.1| RNA polymerase II 140 kDa subunit [Homo sapiens]
          Length = 476

 Score =  693 bits (1789), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 341/487 (70%), Positives = 379/487 (77%), Gaps = 81/487 (16%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGVYITNFHVRMDTLAHVLYYP KPLVTTR                              
Sbjct: 35  MGVYITNFHVRMDTLAHVLYYPQKPLVTTR------------------------------ 64

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYLRFRELPAGINSIVAI  YTGYNQEDSVI+N SAV+RG+FR
Sbjct: 65  ---------------SMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFR 109

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           SVF+RSYK+ ESK+  DQEE FEKP R+TCQGMR+AIYDKLDDDG+IAPG+RVSGDDV+I
Sbjct: 110 SVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVII 169

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT+TLPENEDELE T +R++KRD STFLR SETGIVDQVM+TLN +GYKFCKIRVRSVR
Sbjct: 170 GKTVTLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVR 229

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 230 IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQG 289

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            VS+NKGEIGDATPFNDAVNVQKIS LL +YGY LRGNEV++NG TGRKI +Q+F+GPTY
Sbjct: 290 KVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTY 349

Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
           YQRLKHMVDDKIHSRARGP+QIL RQPMEGR+RDGGLRFGEMERDCQI+HGAAQFLRERL
Sbjct: 350 YQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERL 409

Query: 385 FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
           FE SDPY++HVCN CG++AIAN R +T+EC+GC+NKTQIS VR+PYA KLLFQELMSM+I
Sbjct: 410 FEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSI 469

Query: 445 APRLMVV 451
           APR+M V
Sbjct: 470 APRMMSV 476


>gi|302488402|ref|NP_001019632.2| DNA-directed RNA polymerase II subunit RPB2 [Danio rerio]
          Length = 1174

 Score =  692 bits (1787), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/486 (69%), Positives = 378/486 (77%), Gaps = 81/486 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYP KPLVTTR                              
Sbjct: 733  MGVYITNFHVRMDTLAHVLYYPQKPLVTTR------------------------------ 762

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAI  YTGYNQEDSVI+N SAV+RG+FR
Sbjct: 763  ---------------SMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFR 807

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSYK+ ESK+  DQEE FEKP R+TCQGMR+AIYDKLDDDG+IAPG+RVSG+DV+I
Sbjct: 808  SVFYRSYKEQESKKGFDQEEIFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGEDVII 867

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT+TLPEN+DEL+ T +R++KRD STFLR SETGIVDQVM+TLN +GYKFCKIRVRSVR
Sbjct: 868  GKTVTLPENDDELDSTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVR 927

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 928  IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTVGHLIECLQG 987

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+NKGEIGDATPFNDAVNVQK+S LL EYGY LRGNEV++NG TGRK+ +Q+F+GPTY
Sbjct: 988  KVSANKGEIGDATPFNDAVNVQKVSNLLSEYGYHLRGNEVLYNGFTGRKLTSQIFVGPTY 1047

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQIL RQPMEGR+RDGGLRFGEMERDCQI+HGAAQFL+ERL
Sbjct: 1048 YQRLKHMVDDKIHSRARGPVQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLKERL 1107

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FE SDPY++HVCN CGL+AIAN R +T+EC+GC+NKTQIS VR+PYA KLLFQELMSM+I
Sbjct: 1108 FEASDPYQVHVCNLCGLMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSI 1167

Query: 445  APRLMV 450
            APR+M 
Sbjct: 1168 APRMMT 1173


>gi|291190610|ref|NP_001167150.1| DNA-directed RNA polymerase II subunit RPB2 [Salmo salar]
 gi|223648370|gb|ACN10943.1| DNA-directed RNA polymerase II subunit RPB2 [Salmo salar]
          Length = 1174

 Score =  692 bits (1787), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/486 (69%), Positives = 376/486 (77%), Gaps = 81/486 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYP KPLVTTR                              
Sbjct: 733  MGVYITNFHVRMDTLAHVLYYPQKPLVTTR------------------------------ 762

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAI  YTGYNQEDSVI+N SAV+RG+FR
Sbjct: 763  ---------------SMEYLRFRELPAGINSIVAIAAYTGYNQEDSVIMNRSAVDRGFFR 807

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSYK+ ESK+  DQEE FEKP R+TC GMR+AIYDKLDDDG+IAPG+RVSG+DV+I
Sbjct: 808  SVFYRSYKEQESKKGFDQEEIFEKPTRETCSGMRHAIYDKLDDDGLIAPGVRVSGEDVII 867

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT+TLPE +DEL+ T +R++KRD STFLR SETGIVDQVM+TLN +GYKFCKIRVRSVR
Sbjct: 868  GKTVTLPETDDELDSTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVR 927

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 928  IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTVGHLIECLQG 987

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+NKGEIGDATPFNDAVNVQK+S LL EYGY LRGNEV++NG TGRKI +Q+FLGPTY
Sbjct: 988  KVSANKGEIGDATPFNDAVNVQKVSNLLSEYGYHLRGNEVLYNGFTGRKITSQIFLGPTY 1047

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQIL RQPMEGR+RDGGLRFGEMERDCQI+HGAAQFLRERL
Sbjct: 1048 YQRLKHMVDDKIHSRARGPVQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERL 1107

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FE SDPY++HVCN CGL+AIAN R +T+EC+GC+NKTQIS VR+PYA KLLFQELMSM+I
Sbjct: 1108 FEASDPYQVHVCNLCGLMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSI 1167

Query: 445  APRLMV 450
            APR+M 
Sbjct: 1168 APRMMT 1173


>gi|449676040|ref|XP_002163509.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Hydra
            magnipapillata]
          Length = 1184

 Score =  685 bits (1767), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/486 (68%), Positives = 370/486 (76%), Gaps = 81/486 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYP KPLVTTR                              
Sbjct: 738  MGVYITNFHVRMDTLAHVLYYPQKPLVTTR------------------------------ 767

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SM++L+FRELPAGINSIVAI  YTGYNQEDSV+LNASA+ RG +R
Sbjct: 768  ---------------SMDFLKFRELPAGINSIVAIASYTGYNQEDSVLLNASAINRGLYR 812

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSY+D ES++  DQEE+FEKPNR    GMR AIYDKLDDDG+I PG RVSGDDV+I
Sbjct: 813  SVFYRSYRDEESRKGLDQEEKFEKPNRDETTGMRAAIYDKLDDDGLIPPGSRVSGDDVII 872

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT+TLP++EDE +   K F KRD STFLR SETGIVDQVMLT+N +GYKFCKI+VRSVR
Sbjct: 873  GKTVTLPDDEDETDSQAKHFKKRDASTFLRASETGIVDQVMLTINEEGYKFCKIKVRSVR 932

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGI YRQE                                   
Sbjct: 933  IPQIGDKFASRHGQKGTCGITYRQEDMPFTCEGISPDIIINPHAIPSRMTIGHLIECLQG 992

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+NKGEIGDATPFNDAVNVQ +S+LLQEYGY LRGNEV++NG TGRK+NAQVFLGPTY
Sbjct: 993  KVSANKGEIGDATPFNDAVNVQLVSSLLQEYGYHLRGNEVLYNGFTGRKLNAQVFLGPTY 1052

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQIL RQPMEGR+RDGGLRFGEMERDCQI+HGAAQFL ERL
Sbjct: 1053 YQRLKHMVDDKIHSRARGPVQILTRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLNERL 1112

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FE SD YR+HVCN CGLIAIAN+RNNTFEC+ CKNKTQ+SQ+R+PYA KLLFQELMSM+I
Sbjct: 1113 FEASDAYRVHVCNLCGLIAIANLRNNTFECRSCKNKTQVSQIRIPYACKLLFQELMSMSI 1172

Query: 445  APRLMV 450
            APR+MV
Sbjct: 1173 APRMMV 1178


>gi|156372267|ref|XP_001628960.1| predicted protein [Nematostella vectensis]
 gi|156215949|gb|EDO36897.1| predicted protein [Nematostella vectensis]
          Length = 1182

 Score =  683 bits (1762), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/486 (67%), Positives = 375/486 (77%), Gaps = 81/486 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITN+HVRMDTLAHVLYYP KPLVTTR                              
Sbjct: 737  MGVYITNYHVRMDTLAHVLYYPQKPLVTTR------------------------------ 766

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGIN+IVAI  YTGYNQEDSVI+NASA++RG +R
Sbjct: 767  ---------------SMEYLRFRELPAGINAIVAIASYTGYNQEDSVIMNASAIDRGLYR 811

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSY+D ESK+  DQEE FEKP R   QGMRNA YDKLD+DG+IAPG+RVSGDDV++
Sbjct: 812  SVFYRSYRDQESKKGLDQEETFEKPTRDAVQGMRNASYDKLDEDGLIAPGIRVSGDDVIV 871

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT+TLP+N+DELEGT +++SK+D STFLR SETGIVDQVM+T+N +G+KF KI+VRSVR
Sbjct: 872  GKTVTLPDNDDELEGTARKYSKKDASTFLRPSETGIVDQVMVTINQEGFKFTKIKVRSVR 931

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            +PQIGDKFASRHGQKGTCGI YRQE                                   
Sbjct: 932  VPQIGDKFASRHGQKGTCGITYRQEDMPFTCEGLSPDVIINPHAIPSRMTIGHLIECLQG 991

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+NKGEIGDATPFNDAVNVQKIS LL +YGY LRGNEV+++G TGRK+N QVFLGPTY
Sbjct: 992  KVSANKGEIGDATPFNDAVNVQKISQLLNDYGYHLRGNEVLYSGFTGRKLNTQVFLGPTY 1051

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGP+QIL RQPMEGR+RDGGLRFGEMERDC I+HG+AQFL ERL
Sbjct: 1052 YQRLKHMVDDKIHSRARGPLQILTRQPMEGRSRDGGLRFGEMERDCMIAHGSAQFLNERL 1111

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FEVSDPY  HVCN CGLIAIAN+RNNTFEC+GCKNKTQ+S++R+PYAAKLLFQELMSM+I
Sbjct: 1112 FEVSDPYSCHVCNLCGLIAIANLRNNTFECRGCKNKTQVSRIRMPYAAKLLFQELMSMSI 1171

Query: 445  APRLMV 450
            APR+MV
Sbjct: 1172 APRMMV 1177


>gi|355712719|gb|AES04443.1| polymerase II polypeptide B, 140kDa [Mustela putorius furo]
          Length = 1104

 Score =  664 bits (1713), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/465 (69%), Positives = 360/465 (77%), Gaps = 81/465 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYP KPLVTTR                              
Sbjct: 685  MGVYITNFHVRMDTLAHVLYYPQKPLVTTR------------------------------ 714

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINSIVAI  YTGYNQEDSVI+N SAV+RG+FR
Sbjct: 715  ---------------SMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFR 759

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSYK+ ESK+  DQEE FEKP R+TCQGMR+AIYDKLDDDG+IAPG+RVSGDDV+I
Sbjct: 760  SVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVII 819

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT+TLPENEDELEGT +R++KRD STFLR SETGIVDQVM+TLN +GYKFCKIRVRSVR
Sbjct: 820  GKTVTLPENEDELEGTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVR 879

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGIQYRQE                                   
Sbjct: 880  IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQG 939

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+NKGEIGDATPFNDAVNVQKIS LL +YGY LRGNEV++NG TGRKI +Q+F+GPTY
Sbjct: 940  KVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTY 999

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGP+QIL RQPMEGR+RDGGLRFGEMERDCQI+HGAAQFLRERL
Sbjct: 1000 YQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERL 1059

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLP 429
            FE SDPY++HVCN CG++AIAN R +T+EC+GC+NKTQIS VR+P
Sbjct: 1060 FEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMP 1104


>gi|324500827|gb|ADY40377.1| DNA-directed RNA polymerase II subunit RPB2 [Ascaris suum]
          Length = 1173

 Score =  663 bits (1711), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/486 (66%), Positives = 361/486 (74%), Gaps = 81/486 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVY TNFHVRMDTLAHVLYYP KPLVTTR                              
Sbjct: 732  MGVYTTNFHVRMDTLAHVLYYPQKPLVTTR------------------------------ 761

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRF ELPAGIN+IVAIL YTGYNQEDSVI+N S ++RG FR
Sbjct: 762  ---------------SMEYLRFNELPAGINAIVAILSYTGYNQEDSVIMNQSGIDRGLFR 806

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSY+D E+      EE  EKP R  C GMR+++YDKLD+DGII+PG+RVSGDDV+I
Sbjct: 807  SVFYRSYRDQEANLDNANEELIEKPTRDKCSGMRHSLYDKLDEDGIISPGMRVSGDDVII 866

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKTI+LP+ ED+LE  TK+++KRD STFLR+SETGIVDQVMLTLN DG KF KIRVRSVR
Sbjct: 867  GKTISLPDVEDDLEANTKKYTKRDASTFLRSSETGIVDQVMLTLNTDGNKFVKIRVRSVR 926

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            +PQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 927  LPQIGDKFASRHGQKGTMGIMYRQEDMPFTNEGITPDIIINPHAVPSRMTIGHLIECLQG 986

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             +S+NKGEIGDATPFND VNVQKIS LL EYGY LRGNE+M+NGHTG K+  QVFLGPTY
Sbjct: 987  KLSANKGEIGDATPFNDTVNVQKISNLLSEYGYHLRGNEIMYNGHTGHKLTTQVFLGPTY 1046

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQ++ RQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL
Sbjct: 1047 YQRLKHMVDDKIHSRARGPVQMMNRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 1106

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FEVSDPY ++VCN CGLI IAN+R NTFECK C+NKTQ+S +R+PYA KLLFQELMSM+I
Sbjct: 1107 FEVSDPYHVYVCNNCGLIVIANLRTNTFECKACRNKTQVSAIRIPYACKLLFQELMSMSI 1166

Query: 445  APRLMV 450
            APRLMV
Sbjct: 1167 APRLMV 1172


>gi|390337473|ref|XP_003724570.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
            subunit RPB2-like [Strongylocentrotus purpuratus]
          Length = 1142

 Score =  662 bits (1709), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/488 (68%), Positives = 369/488 (75%), Gaps = 83/488 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITN+HVRMDTLAHVLYYP KPL TTR                              
Sbjct: 699  MGVYITNYHVRMDTLAHVLYYPQKPLTTTR------------------------------ 728

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGINS+VAI  YTGYNQEDSVILNASA++RG+FR
Sbjct: 729  ---------------SMEYLRFRELPAGINSVVAIASYTGYNQEDSVILNASAIDRGFFR 773

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGD-DVV 179
            SVF+RSYKDAESK + D++E FEKP+R+TCQGMRNA+YDKL++DGII PG RVSG+ D  
Sbjct: 774  SVFYRSYKDAESKAV-DKDEMFEKPSRETCQGMRNAVYDKLEEDGIIPPGSRVSGNRDFX 832

Query: 180  IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
            I     +      LEGT++RF+KRD STF+R++ETGI+DQVM+++N DGYKFCKI+VRSV
Sbjct: 833  ICVNXYVXRPFKALEGTSRRFTKRDCSTFMRSTETGIIDQVMVSINQDGYKFCKIKVRSV 892

Query: 240  RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
            R PQIGDKFASRHGQKGTCGI+YR E                                  
Sbjct: 893  RTPQIGDKFASRHGQKGTCGIKYRVEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQ 952

Query: 266  --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
              VSS+KGEIGDATPFND+VNVQKIS LL EYGY  RGNEV+F G TGRKI  QVFLGPT
Sbjct: 953  GKVSSSKGEIGDATPFNDSVNVQKISNLLHEYGYHQRGNEVLFCGFTGRKIGTQVFLGPT 1012

Query: 324  YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRER 383
            YYQRLKHMVDDKIHSRARGPVQIL RQPMEGR+RDGGLRFGEMERDCQISHGAAQFLRER
Sbjct: 1013 YYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSRDGGLRFGEMERDCQISHGAAQFLRER 1072

Query: 384  LFEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMN 443
            LFEVSDPYR+HVCNFCGLIAIAN+RNNTFEC+GCKNKTQISQVRLPYA KLLFQELMSM 
Sbjct: 1073 LFEVSDPYRVHVCNFCGLIAIANLRNNTFECRGCKNKTQISQVRLPYACKLLFQELMSMC 1132

Query: 444  IAPRLMVV 451
            IAPR+MV+
Sbjct: 1133 IAPRMMVL 1140


>gi|312079478|ref|XP_003142191.1| DNA-directed RNA polymerase II second largest subunit [Loa loa]
 gi|307762647|gb|EFO21881.1| DNA-directed RNA polymerase II subunit RPB2 [Loa loa]
          Length = 1171

 Score =  660 bits (1703), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/486 (65%), Positives = 362/486 (74%), Gaps = 81/486 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVY TNFHVRMDTLAHVLYYP KPLVTTR                              
Sbjct: 730  MGVYTTNFHVRMDTLAHVLYYPQKPLVTTR------------------------------ 759

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRF ELPAGIN+IVAIL YTGYNQEDS+I+N S ++RG FR
Sbjct: 760  ---------------SMEYLRFNELPAGINAIVAILSYTGYNQEDSIIMNQSGIDRGLFR 804

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSY+D E+      EE  EKP R  C GMR+++YDKLD+DGII+PG+RVSGDDV+I
Sbjct: 805  SVFYRSYRDQEANLDNANEELIEKPTRDKCSGMRHSLYDKLDEDGIISPGMRVSGDDVII 864

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKTI+LP+ ED+L+ T KR++K+D STFLR+SETGIVDQVMLTLN DG KF KIRVRSVR
Sbjct: 865  GKTISLPDTEDDLDATIKRYTKKDASTFLRSSETGIVDQVMLTLNTDGNKFVKIRVRSVR 924

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            +PQIGDKFASRHGQKGT G+ YRQE                                   
Sbjct: 925  LPQIGDKFASRHGQKGTMGMMYRQEDMPFTNEGITPDIIINPHAVPSRMTIGHLIECLQG 984

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             +S+NKGEIGDATPFND VNVQKIS LLQEYGY LRGNE+M+NGHTGRK+  QVFLGPTY
Sbjct: 985  KLSANKGEIGDATPFNDTVNVQKISNLLQEYGYHLRGNEIMYNGHTGRKLTIQVFLGPTY 1044

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQ++ RQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL
Sbjct: 1045 YQRLKHMVDDKIHSRARGPVQMMNRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 1104

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FEVSDPY +++CN CGLI +AN+R N+FECK C+NKTQ+S  R+PYA KLLFQELMSM+I
Sbjct: 1105 FEVSDPYHVYICNNCGLIVVANLRTNSFECKACRNKTQVSAFRIPYACKLLFQELMSMSI 1164

Query: 445  APRLMV 450
            APRLMV
Sbjct: 1165 APRLMV 1170


>gi|170591608|ref|XP_001900562.1| DNA-directed RNA polymerase II second largest subunit [Brugia malayi]
 gi|158592174|gb|EDP30776.1| DNA-directed RNA polymerase II second largest subunit, putative
            [Brugia malayi]
          Length = 1185

 Score =  659 bits (1700), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/486 (65%), Positives = 361/486 (74%), Gaps = 81/486 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVY TNFHVRMDTLAHVLYYP KPLVTTR                              
Sbjct: 744  MGVYTTNFHVRMDTLAHVLYYPQKPLVTTR------------------------------ 773

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRF ELPAGIN+IVAIL YTGYNQEDS+I+N S ++RG FR
Sbjct: 774  ---------------SMEYLRFNELPAGINAIVAILSYTGYNQEDSIIMNQSGIDRGLFR 818

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSY+D E+      EE  EKP R  C GMR+++YDKLD+DGII+PG+RVSGDDV+I
Sbjct: 819  SVFYRSYRDQEANLDNANEELIEKPTRDKCSGMRHSLYDKLDEDGIISPGMRVSGDDVII 878

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKTI+LP+ ED+L+   KR++K+D STFLR+SETGIVDQVMLTLN DG KF KIRVRSVR
Sbjct: 879  GKTISLPDTEDDLDAAIKRYTKKDASTFLRSSETGIVDQVMLTLNTDGNKFVKIRVRSVR 938

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            +PQIGDKFASRHGQKGT G+ YRQE                                   
Sbjct: 939  LPQIGDKFASRHGQKGTMGMMYRQEDMPFTNEGITPDIIINPHAVPSRMTIGHLIECLQG 998

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             +S+NKGEIGDATPFND VNVQKIS LLQEYGY LRGNE+M+NGHTGRK+  QVFLGPTY
Sbjct: 999  KLSANKGEIGDATPFNDTVNVQKISNLLQEYGYHLRGNEIMYNGHTGRKLTIQVFLGPTY 1058

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQ++ RQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL
Sbjct: 1059 YQRLKHMVDDKIHSRARGPVQMMNRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 1118

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FEVSDPY +++CN CGLI +AN+R N+FECK C+NKTQ+S  R+PYA KLLFQELMSM+I
Sbjct: 1119 FEVSDPYHVYICNNCGLIVVANLRTNSFECKACRNKTQVSAFRIPYACKLLFQELMSMSI 1178

Query: 445  APRLMV 450
            APRLMV
Sbjct: 1179 APRLMV 1184


>gi|358337637|dbj|GAA55991.1| DNA-directed RNA polymerase II subunit RPB2 [Clonorchis sinensis]
          Length = 1921

 Score =  659 bits (1699), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/487 (66%), Positives = 365/487 (74%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYI+NFH RMDTLA+VLYYP KPLV TR                              
Sbjct: 1475 MGVYISNFHTRMDTLANVLYYPQKPLVATR------------------------------ 1504

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGIN+IVAI  YTGYNQEDSVILN SA++RG+FR
Sbjct: 1505 ---------------SMEYLRFRELPAGINAIVAIATYTGYNQEDSVILNESAIQRGFFR 1549

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S F+R+YKD E++   DQEE FEKPN Q CQGMR+AIYDKLDDDG+IAPG RVSGDDV+I
Sbjct: 1550 SEFYRTYKDQEARHGMDQEEVFEKPNPQQCQGMRHAIYDKLDDDGLIAPGTRVSGDDVLI 1609

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKTITLPENEDE+EG  +R++KRD S F+R SE GIVDQVM+T N +G KFCK+RVR+ +
Sbjct: 1610 GKTITLPENEDEMEGGQRRYTKRDASVFMRRSEYGIVDQVMITWNNEGNKFCKVRVRTTK 1669

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
             PQ+GDKFASRHGQKGTCGI+YRQE                                   
Sbjct: 1670 TPQVGDKFASRHGQKGTCGIRYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQG 1729

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+NKGEIGDATPFNDAVNV+KIS LLQEYGYQ  GNE+M+NG TGRK+N+Q+FLGPTY
Sbjct: 1730 KVSANKGEIGDATPFNDAVNVRKISLLLQEYGYQHTGNEIMYNGFTGRKLNSQIFLGPTY 1789

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQIL RQPMEGR+RDGGLRFGEMERDCQI+HGAAQFLRERL
Sbjct: 1790 YQRLKHMVDDKIHSRARGPVQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERL 1849

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            F  SDPY+++VCN CGLIAIA+ RN T+EC+ CKN TQIS V+LPYA KLLFQELMSM+I
Sbjct: 1850 FFASDPYQVYVCNLCGLIAIAHQRNKTYECRSCKNTTQISLVKLPYACKLLFQELMSMSI 1909

Query: 445  APRLMVV 451
            APR+MV 
Sbjct: 1910 APRMMVT 1916


>gi|402591318|gb|EJW85248.1| DNA-directed RNA polymerase [Wuchereria bancrofti]
          Length = 641

 Score =  658 bits (1697), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/486 (65%), Positives = 361/486 (74%), Gaps = 81/486 (16%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGVY TNFHVRMDTLAHVLYYP KPLVTTR                              
Sbjct: 200 MGVYTTNFHVRMDTLAHVLYYPQKPLVTTR------------------------------ 229

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYLRF ELPAGIN+IVAIL YTGYNQEDS+I+N S ++RG FR
Sbjct: 230 ---------------SMEYLRFNELPAGINAIVAILSYTGYNQEDSIIMNQSGIDRGLFR 274

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           SVF+RSY+D E+      EE  EKP R  C GMR+++YDKLD+DGII+PG+RVSGDDV+I
Sbjct: 275 SVFYRSYRDQEANLDNANEELIEKPTRDKCSGMRHSLYDKLDEDGIISPGMRVSGDDVII 334

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKTI+LP+ ED+L+   KR++K+D STFLR+SETGIVDQVMLTLN DG KF KIRVRSVR
Sbjct: 335 GKTISLPDTEDDLDAAIKRYTKKDASTFLRSSETGIVDQVMLTLNTDGNKFVKIRVRSVR 394

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           +PQIGDKFASRHGQKGT G+ YRQE                                   
Sbjct: 395 LPQIGDKFASRHGQKGTMGMMYRQEDMPFTNEGITPDIIINPHAVPSRMTIGHLIECLQG 454

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            +S+NKGEIGDATPFND VNVQKIS LLQEYGY LRGNE+M+NGHTGRK+  QVFLGPTY
Sbjct: 455 KLSANKGEIGDATPFNDTVNVQKISNLLQEYGYHLRGNEIMYNGHTGRKLTVQVFLGPTY 514

Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
           YQRLKHMVDDKIHSRARGPVQ++ RQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL
Sbjct: 515 YQRLKHMVDDKIHSRARGPVQMMNRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 574

Query: 385 FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
           FEVSDPY +++CN CGLI +AN+R N+FECK C+NKTQ+S  R+PYA KLLFQELMSM+I
Sbjct: 575 FEVSDPYHVYICNNCGLIVVANLRTNSFECKACRNKTQVSAFRIPYACKLLFQELMSMSI 634

Query: 445 APRLMV 450
           APRLMV
Sbjct: 635 APRLMV 640


>gi|360044299|emb|CCD81846.1| putative dna-directed rna polymerase II subunit [Schistosoma mansoni]
          Length = 1158

 Score =  653 bits (1685), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/486 (65%), Positives = 364/486 (74%), Gaps = 81/486 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYI+NFH RMDTLA+VLYYP KPLV TR                              
Sbjct: 712  MGVYISNFHTRMDTLANVLYYPQKPLVATR------------------------------ 741

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGIN+IVAI  YTGYNQEDSVI+N SA++RG+FR
Sbjct: 742  ---------------SMEYLRFRELPAGINAIVAIATYTGYNQEDSVIINESAIQRGFFR 786

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S F+R+YKD E++   D EE FEKPN Q CQGMR+AIYDKLDDDG+IAPG RVSGDDV+I
Sbjct: 787  SEFYRTYKDQETRHGMDLEEVFEKPNPQNCQGMRHAIYDKLDDDGLIAPGTRVSGDDVLI 846

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKTITLPENEDE+EG  +R++KRD S F+R SE GIVDQVM+T N +G KFCK+RVR+ +
Sbjct: 847  GKTITLPENEDEMEGGQRRYTKRDASVFMRRSEYGIVDQVMVTWNNEGNKFCKVRVRTTK 906

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
             PQ+GDKFASRHGQKGTCGI+YRQE                                   
Sbjct: 907  APQVGDKFASRHGQKGTCGIRYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQG 966

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+NKGEIGDATPFNDAVNV+KIS LLQEYGYQ  GNE+M+NG TGRK+N+Q+FLGPTY
Sbjct: 967  KVSANKGEIGDATPFNDAVNVRKISLLLQEYGYQHTGNEIMYNGFTGRKLNSQIFLGPTY 1026

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSR+RGPVQIL RQPMEGR+RDGGLRFGEMERDCQI+HGAAQFLRERL
Sbjct: 1027 YQRLKHMVDDKIHSRSRGPVQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERL 1086

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            F  SDPY+++VCN CGLIAIA+ RN T+EC+ CKN TQIS V+LPYA KLLFQELMSM+I
Sbjct: 1087 FFASDPYQVYVCNLCGLIAIAHQRNKTYECRSCKNTTQISLVKLPYACKLLFQELMSMSI 1146

Query: 445  APRLMV 450
            APR+M+
Sbjct: 1147 APRMMI 1152


>gi|256073421|ref|XP_002573029.1| DNA-directed rna polymerase II subunit [Schistosoma mansoni]
          Length = 1304

 Score =  653 bits (1685), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/486 (65%), Positives = 364/486 (74%), Gaps = 81/486 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYI+NFH RMDTLA+VLYYP KPLV TR                              
Sbjct: 858  MGVYISNFHTRMDTLANVLYYPQKPLVATR------------------------------ 887

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGIN+IVAI  YTGYNQEDSVI+N SA++RG+FR
Sbjct: 888  ---------------SMEYLRFRELPAGINAIVAIATYTGYNQEDSVIINESAIQRGFFR 932

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S F+R+YKD E++   D EE FEKPN Q CQGMR+AIYDKLDDDG+IAPG RVSGDDV+I
Sbjct: 933  SEFYRTYKDQETRHGMDLEEVFEKPNPQNCQGMRHAIYDKLDDDGLIAPGTRVSGDDVLI 992

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKTITLPENEDE+EG  +R++KRD S F+R SE GIVDQVM+T N +G KFCK+RVR+ +
Sbjct: 993  GKTITLPENEDEMEGGQRRYTKRDASVFMRRSEYGIVDQVMVTWNNEGNKFCKVRVRTTK 1052

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
             PQ+GDKFASRHGQKGTCGI+YRQE                                   
Sbjct: 1053 APQVGDKFASRHGQKGTCGIRYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQG 1112

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+NKGEIGDATPFNDAVNV+KIS LLQEYGYQ  GNE+M+NG TGRK+N+Q+FLGPTY
Sbjct: 1113 KVSANKGEIGDATPFNDAVNVRKISLLLQEYGYQHTGNEIMYNGFTGRKLNSQIFLGPTY 1172

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSR+RGPVQIL RQPMEGR+RDGGLRFGEMERDCQI+HGAAQFLRERL
Sbjct: 1173 YQRLKHMVDDKIHSRSRGPVQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERL 1232

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            F  SDPY+++VCN CGLIAIA+ RN T+EC+ CKN TQIS V+LPYA KLLFQELMSM+I
Sbjct: 1233 FFASDPYQVYVCNLCGLIAIAHQRNKTYECRSCKNTTQISLVKLPYACKLLFQELMSMSI 1292

Query: 445  APRLMV 450
            APR+M+
Sbjct: 1293 APRMMI 1298


>gi|226480014|emb|CAX73303.1| putative DNA-directed RNA polymerase II 140 kDa polypeptide (RNA
            polymerase II subunit 2) (RPB2) [Schistosoma japonicum]
          Length = 1196

 Score =  651 bits (1679), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/486 (65%), Positives = 364/486 (74%), Gaps = 81/486 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYI+NFH RMDTLA+VLYYP KPLV TR                              
Sbjct: 750  MGVYISNFHTRMDTLANVLYYPQKPLVATR------------------------------ 779

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGIN+IVAI  YTGYNQEDSVI+N SA++RG+FR
Sbjct: 780  ---------------SMEYLRFRELPAGINAIVAIATYTGYNQEDSVIINESAIQRGFFR 824

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S F+R+YKD E++   D EE FEKPN Q CQGMR+AIYDKLDDDG+IAPG RVSGDDV+I
Sbjct: 825  SEFYRTYKDQETRHGMDLEEVFEKPNPQNCQGMRHAIYDKLDDDGLIAPGTRVSGDDVLI 884

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKTITLPENEDE+EG  +R++KRD S F+R SE GIVDQVM+T N +G KFCK+RVR+ +
Sbjct: 885  GKTITLPENEDEMEGGQRRYTKRDASVFMRRSEYGIVDQVMVTWNNEGNKFCKVRVRTTK 944

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
             PQ+GDKFASRHGQKGTCGI+YRQE                                   
Sbjct: 945  APQVGDKFASRHGQKGTCGIRYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQG 1004

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+NKGEIGDATPFNDAVNV+KIS LLQEYGYQ  GNE+M+NG TGRK+N+Q+FLGPTY
Sbjct: 1005 KVSANKGEIGDATPFNDAVNVRKISLLLQEYGYQHTGNEIMYNGFTGRKLNSQIFLGPTY 1064

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHS++RGPVQIL RQPMEGR+RDGGLRFGEMERDCQI+HGAAQFLRERL
Sbjct: 1065 YQRLKHMVDDKIHSQSRGPVQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERL 1124

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            F  SDPY+++VCN CGLIAIA+ RN T+EC+ CKN TQIS V+LPYA KLLFQELMSM+I
Sbjct: 1125 FFASDPYQVYVCNLCGLIAIAHQRNKTYECRSCKNTTQISLVKLPYACKLLFQELMSMSI 1184

Query: 445  APRLMV 450
            APR+M+
Sbjct: 1185 APRMMI 1190


>gi|341896020|gb|EGT51955.1| CBN-RPB-2 protein [Caenorhabditis brenneri]
          Length = 1195

 Score =  650 bits (1676), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/486 (65%), Positives = 360/486 (74%), Gaps = 81/486 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVY TNFHVRMDTLAHVLYYP KPLVTTR                              
Sbjct: 737  MGVYTTNFHVRMDTLAHVLYYPQKPLVTTR------------------------------ 766

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRF ELPAGIN+IVAIL Y+GYNQEDSVI+N SA++RG FR
Sbjct: 767  ---------------SMEYLRFNELPAGINAIVAILSYSGYNQEDSVIMNNSAIDRGLFR 811

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSY+D E+      EE  EKP R+ C GMR+A+YDKLD+DGII+PG+RVSGDDV+I
Sbjct: 812  SVFYRSYRDNEANLDNANEELIEKPTREKCSGMRHALYDKLDEDGIISPGMRVSGDDVII 871

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT+ LP+ +D+L+ T K++ KRD STFLR+SETGIVDQVML+LN DG KF KIR+RSVR
Sbjct: 872  GKTVALPDIDDDLDATGKKYPKRDASTFLRSSETGIVDQVMLSLNNDGNKFVKIRMRSVR 931

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            +PQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 932  LPQIGDKFASRHGQKGTMGIMYRQEDMPFTAEGLTPDIIINPHAVPSRMTIGHLIECLQG 991

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             +S+NKGEIGDATPFND VNVQKIS LL EYGY LRGNEVM+NGHTG+K+  Q+F GPTY
Sbjct: 992  KLSANKGEIGDATPFNDTVNVQKISGLLCEYGYHLRGNEVMYNGHTGKKLTTQIFFGPTY 1051

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGP+Q++ RQPMEGRARDGGLRFGEMERDCQISHGA QFLRERL
Sbjct: 1052 YQRLKHMVDDKIHSRARGPIQMMNRQPMEGRARDGGLRFGEMERDCQISHGATQFLRERL 1111

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FEVSDPY ++VCN CGLI +AN+R N+FECK C+NKTQ+S VR+PYA KLLFQELMSM+I
Sbjct: 1112 FEVSDPYHVYVCNNCGLIVVANLRTNSFECKACRNKTQVSAVRIPYACKLLFQELMSMSI 1171

Query: 445  APRLMV 450
            APRLMV
Sbjct: 1172 APRLMV 1177


>gi|308487676|ref|XP_003106033.1| CRE-RPB-2 protein [Caenorhabditis remanei]
 gi|308254607|gb|EFO98559.1| CRE-RPB-2 protein [Caenorhabditis remanei]
          Length = 1207

 Score =  648 bits (1671), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 315/486 (64%), Positives = 360/486 (74%), Gaps = 81/486 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVY TNFHVRMDTLAHVLYYP KPLVTTR                              
Sbjct: 753  MGVYTTNFHVRMDTLAHVLYYPQKPLVTTR------------------------------ 782

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRF ELPAGIN+IVAIL Y+GYNQEDSVI+N SA++RG FR
Sbjct: 783  ---------------SMEYLRFNELPAGINAIVAILSYSGYNQEDSVIMNNSAIDRGLFR 827

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSY+D E+      EE  EKP R+ C GMR+++YDKLD+DGII+PG+RVSGDDV+I
Sbjct: 828  SVFYRSYRDNEANLDNANEELIEKPTREKCSGMRHSLYDKLDEDGIISPGMRVSGDDVII 887

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT+ LP+ +D+L+ T K++ KRD STFLR+SETGIVDQVML+LN DG KF KIR+RSVR
Sbjct: 888  GKTVALPDIDDDLDATGKKYPKRDASTFLRSSETGIVDQVMLSLNNDGNKFVKIRMRSVR 947

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            +PQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 948  LPQIGDKFASRHGQKGTMGIMYRQEDMPFTAEGLTPDIIINPHAVPSRMTIGHLIECLQG 1007

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             +S+NKGEIGDATPFND VNVQKIS LL EYGY LRGNEVM+NGHTG+K+  Q+F GPTY
Sbjct: 1008 KLSANKGEIGDATPFNDTVNVQKISGLLCEYGYHLRGNEVMYNGHTGKKLTTQIFFGPTY 1067

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGP+Q++ RQPMEGRARDGGLRFGEMERDCQISHGA QFLRERL
Sbjct: 1068 YQRLKHMVDDKIHSRARGPIQMMNRQPMEGRARDGGLRFGEMERDCQISHGATQFLRERL 1127

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FEVSDPY ++VCN CGLI +AN+R N+FECK C+NKTQ+S VR+PYA KLLFQELMSM+I
Sbjct: 1128 FEVSDPYHVYVCNNCGLIVVANLRTNSFECKACRNKTQVSAVRIPYACKLLFQELMSMSI 1187

Query: 445  APRLMV 450
            APRLMV
Sbjct: 1188 APRLMV 1193


>gi|268574492|ref|XP_002642223.1| C. briggsae CBR-RPB-2 protein [Caenorhabditis briggsae]
          Length = 1194

 Score =  647 bits (1670), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 315/486 (64%), Positives = 360/486 (74%), Gaps = 81/486 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVY TNFHVRMDTLAHVLYYP KPLVTTR                              
Sbjct: 739  MGVYTTNFHVRMDTLAHVLYYPQKPLVTTR------------------------------ 768

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRF ELPAGIN+IVAIL Y+GYNQEDSVI+N SA++RG FR
Sbjct: 769  ---------------SMEYLRFNELPAGINAIVAILSYSGYNQEDSVIMNNSAIDRGLFR 813

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSY+D E+      EE  EKP R+ C GMR+++YDKLD+DGII+PG+RVSGDDV+I
Sbjct: 814  SVFYRSYRDNEANIDNANEELIEKPTREKCSGMRHSLYDKLDEDGIISPGMRVSGDDVII 873

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT+ LP+ +D+L+ T K++ KRD STFLR+SETGIVDQVML+LN DG KF KIR+RSVR
Sbjct: 874  GKTVALPDIDDDLDATGKKYPKRDASTFLRSSETGIVDQVMLSLNNDGNKFVKIRMRSVR 933

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            +PQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 934  LPQIGDKFASRHGQKGTMGIMYRQEDMPFTAEGLTPDIIINPHAVPSRMTIGHLIECLQG 993

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             +S+NKGEIGDATPFND VNVQKIS LL EYGY LRGNEVM+NGHTG+K+  Q+F GPTY
Sbjct: 994  KLSANKGEIGDATPFNDTVNVQKISGLLCEYGYHLRGNEVMYNGHTGKKLTTQIFFGPTY 1053

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGP+Q++ RQPMEGRARDGGLRFGEMERDCQISHGA QFLRERL
Sbjct: 1054 YQRLKHMVDDKIHSRARGPIQMMNRQPMEGRARDGGLRFGEMERDCQISHGATQFLRERL 1113

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FEVSDPY ++VCN CGLI +AN+R N+FECK C+NKTQ+S VR+PYA KLLFQELMSM+I
Sbjct: 1114 FEVSDPYHVYVCNNCGLIVVANLRTNSFECKACRNKTQVSAVRIPYACKLLFQELMSMSI 1173

Query: 445  APRLMV 450
            APRLMV
Sbjct: 1174 APRLMV 1179


>gi|17552304|ref|NP_498047.1| Protein RPB-2 [Caenorhabditis elegans]
 gi|2507348|sp|Q10578.2|RPB2_CAEEL RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA
            polymerase II subunit 2; Short=RNA polymerase II subunit
            B2
 gi|351058294|emb|CCD65728.1| Protein RPB-2 [Caenorhabditis elegans]
          Length = 1193

 Score =  647 bits (1670), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 314/486 (64%), Positives = 360/486 (74%), Gaps = 81/486 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVY TNFHVRMDTLAHVLYYP KPLVTTR                              
Sbjct: 739  MGVYTTNFHVRMDTLAHVLYYPQKPLVTTR------------------------------ 768

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRF ELPAGIN+IVAIL Y+GYNQEDSVI+N SA++RG FR
Sbjct: 769  ---------------SMEYLRFNELPAGINAIVAILSYSGYNQEDSVIMNNSAIDRGLFR 813

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSY+D E+      EE  EKP R+ C GMR+++YDKLD+DGII+PG+RVSGDDV+I
Sbjct: 814  SVFYRSYRDNEANLDNANEELIEKPTREKCSGMRHSLYDKLDEDGIISPGMRVSGDDVII 873

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT+ LP+ +D+L+ + K++ KRD STFLR+SETGIVDQVML+LN DG KF KIR+RSVR
Sbjct: 874  GKTVALPDIDDDLDASGKKYPKRDASTFLRSSETGIVDQVMLSLNSDGNKFVKIRMRSVR 933

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            +PQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 934  LPQIGDKFASRHGQKGTMGIMYRQEDMPFTAEGLTPDIIINPHAVPSRMTIGHLIECLQG 993

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             +S+NKGEIGDATPFND VNVQKIS LL EYGY LRGNEVM+NGHTG+K+  Q+F GPTY
Sbjct: 994  KLSANKGEIGDATPFNDTVNVQKISGLLCEYGYHLRGNEVMYNGHTGKKLTTQIFFGPTY 1053

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGP+Q++ RQPMEGRARDGGLRFGEMERDCQISHGA QFLRERL
Sbjct: 1054 YQRLKHMVDDKIHSRARGPIQMMNRQPMEGRARDGGLRFGEMERDCQISHGATQFLRERL 1113

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FEVSDPY ++VCN CGLI +AN+R N+FECK C+NKTQ+S VR+PYA KLLFQELMSM+I
Sbjct: 1114 FEVSDPYHVYVCNNCGLIVVANLRTNSFECKACRNKTQVSAVRIPYACKLLFQELMSMSI 1173

Query: 445  APRLMV 450
            APRLMV
Sbjct: 1174 APRLMV 1179


>gi|196009726|ref|XP_002114728.1| DNA directed RNA polymerase II polypeptide B [Trichoplax adhaerens]
 gi|190582790|gb|EDV22862.1| DNA directed RNA polymerase II polypeptide B [Trichoplax adhaerens]
          Length = 1196

 Score =  645 bits (1664), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/485 (64%), Positives = 361/485 (74%), Gaps = 81/485 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVY TNFHVRMDTLAHVLYYP KPLVTTR                              
Sbjct: 721  MGVYTTNFHVRMDTLAHVLYYPQKPLVTTR------------------------------ 750

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGIN+IVAI  YTGYNQEDS+I+N  A++RG FR
Sbjct: 751  ---------------SMEYLRFRELPAGINTIVAIASYTGYNQEDSIIMNRGAIDRGLFR 795

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSY+D ES    + EE FEKP+++TC GM NA+YDKLDDDG++APG RVSG D+VI
Sbjct: 796  SVFYRSYRDQESSGDFNSEEIFEKPSKETCSGMHNAMYDKLDDDGLVAPGTRVSGGDIVI 855

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  LPE+ D L  T KRF KRD ST LR+SE+GIVDQV+LT++ +GYKF K+RVRSVR
Sbjct: 856  GKTALLPEDADALGDTNKRFVKRDASTGLRSSESGIVDQVLLTVSQEGYKFTKVRVRSVR 915

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGI YRQE                                   
Sbjct: 916  IPQIGDKFASRHGQKGTCGITYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQG 975

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+NKGEIGDATPFND + VQKIS+LL +YGY LRGNEV++NG TGRK+N QVFLGPTY
Sbjct: 976  KVSANKGEIGDATPFNDTLTVQKISSLLSDYGYHLRGNEVLYNGFTGRKLNTQVFLGPTY 1035

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIH+RARGP+Q L RQPM+GRARDGGLRFGEMERDCQISHGAAQFLRERL
Sbjct: 1036 YQRLKHMVDDKIHARARGPLQNLTRQPMQGRARDGGLRFGEMERDCQISHGAAQFLRERL 1095

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            ++ SDPY +H+CN CGL+A+AN+RN+T+ECKGC+NKT+ISQVR+PYA KLLFQELMSM++
Sbjct: 1096 YDASDPYIVHMCNLCGLVAVANLRNDTYECKGCRNKTRISQVRIPYACKLLFQELMSMSL 1155

Query: 445  APRLM 449
            APR+M
Sbjct: 1156 APRIM 1160


>gi|339250694|ref|XP_003374332.1| DNA-directed RNA polymerase II subunit RPB2 [Trichinella spiralis]
 gi|316969378|gb|EFV53485.1| DNA-directed RNA polymerase II subunit RPB2 [Trichinella spiralis]
          Length = 1190

 Score =  629 bits (1622), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 307/484 (63%), Positives = 354/484 (73%), Gaps = 83/484 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG+Y TNFHVRMDTLAHVL+YP KPLVTTR                              
Sbjct: 752  MGIYTTNFHVRMDTLAHVLWYPQKPLVTTR------------------------------ 781

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRF ELPAGINSIVAIL YTGYNQEDSVI+N+S+++RG FR
Sbjct: 782  ---------------SMEYLRFNELPAGINSIVAILSYTGYNQEDSVIMNSSSIDRGMFR 826

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+F+RSY+D ES R    EE  EKP RQ CQGMRNA+Y KLDDDGI++PG RVSGDDV+I
Sbjct: 827  SIFYRSYRDQESSREARNEETIEKPTRQICQGMRNAVYHKLDDDGIVSPGTRVSGDDVII 886

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKTI L + +D    TTKR SK+D STFLR SETGIVDQVML++N DG KF K+RVRS+R
Sbjct: 887  GKTIMLEDTDDS--STTKRSSKKDASTFLRASETGIVDQVMLSVNADGNKFVKVRVRSIR 944

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGT G+ YRQE                                   
Sbjct: 945  IPQIGDKFASRHGQKGTIGMIYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQG 1004

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+N+GEIGDATPFND+VNVQK+S+LLQEYGY LRGNEVM++G TGRK+N QVF+GPTY
Sbjct: 1005 KVSANRGEIGDATPFNDSVNVQKVSSLLQEYGYHLRGNEVMYSGFTGRKLNTQVFIGPTY 1064

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGP+Q++ RQPMEGR+RDGGLRFGEMERDCQI+HGAA FL+ERL
Sbjct: 1065 YQRLKHMVDDKIHSRARGPLQMMARQPMEGRSRDGGLRFGEMERDCQIAHGAAHFLKERL 1124

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FEVSDPY ++VC  CG+IAIAN R   +EC+ C+NKT+IS+V +PYA KLLFQEL SM I
Sbjct: 1125 FEVSDPYTVYVCKICGIIAIANSRTGHYECRTCRNKTKISRVNIPYACKLLFQELTSMCI 1184

Query: 445  APRL 448
            APR+
Sbjct: 1185 APRM 1188


>gi|66806179|ref|XP_636812.1| RNA polymerase II core subunit [Dictyostelium discoideum AX4]
 gi|74896933|sp|Q54J75.1|RPB2_DICDI RecName: Full=DNA-directed RNA polymerase II subunit rpb2; Short=RNA
            polymerase II subunit 2; Short=RNA polymerase II subunit
            B2
 gi|60465215|gb|EAL63310.1| RNA polymerase II core subunit [Dictyostelium discoideum AX4]
          Length = 1170

 Score =  598 bits (1543), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 287/484 (59%), Positives = 352/484 (72%), Gaps = 82/484 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITN+ +RMDT+AHVL+YP KPLVTTR                              
Sbjct: 729  MGVYITNYQLRMDTMAHVLFYPQKPLVTTR------------------------------ 758

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYL FRELPAG N  VAI CY+GYNQEDSVILN SA++RG FR
Sbjct: 759  ---------------SMEYLHFRELPAGQNVCVAIACYSGYNQEDSVILNQSAIDRGLFR 803

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+F+R+YKD + K+    EE FEKP R TC GMR+  Y+K+DDDG++APG+RV+GDD++I
Sbjct: 804  SMFYRAYKDEQKKQTSLMEEVFEKPERDTCAGMRHGSYEKIDDDGLVAPGVRVAGDDIII 863

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  LP ++D+L   T+R +KRD ST LR+SETGIVDQV+LT + +G+KFCK+RVRS+R
Sbjct: 864  GKTTPLPPSDDDLGPKTRRHTKRDSSTALRSSETGIVDQVILTTSGEGFKFCKVRVRSMR 923

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            +PQIGDKF+SRHGQKGTCG+ YRQE                                   
Sbjct: 924  VPQIGDKFSSRHGQKGTCGMAYRQEDLPFTVEGIVPDIIVNPHAIPSRMTIGQLIECLLG 983

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS++ G+ GDATPF D V V+ IS  L + GYQ+ G+EVM+NGHTGR+++AQ+F+GPTY
Sbjct: 984  KVSASTGDEGDATPFTD-VTVEAISQALHKIGYQMTGHEVMYNGHTGRRMDAQIFIGPTY 1042

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSR+RGPVQIL RQP+EGR+RDGGLRFGEMERDC ISHGAAQFL+ERL
Sbjct: 1043 YQRLKHMVDDKIHSRSRGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGAAQFLKERL 1102

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            F+ SD YR+H+C+ CGLIAIAN++ N+FEC+ CKNKTQISQ+R+PYAAKLLFQELMSM+I
Sbjct: 1103 FDQSDSYRVHICDICGLIAIANLKKNSFECRRCKNKTQISQIRMPYAAKLLFQELMSMSI 1162

Query: 445  APRL 448
            APR+
Sbjct: 1163 APRM 1166


>gi|330796313|ref|XP_003286212.1| RNA polymerase II core subunit [Dictyostelium purpureum]
 gi|325083799|gb|EGC37242.1| RNA polymerase II core subunit [Dictyostelium purpureum]
          Length = 1169

 Score =  598 bits (1541), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 288/484 (59%), Positives = 352/484 (72%), Gaps = 82/484 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITN+ +RMDT+AHVL+YP KPLVTTR                              
Sbjct: 731  MGVYITNYQLRMDTMAHVLFYPQKPLVTTR------------------------------ 760

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYL FRELPAG N+ VAI CY+GYNQEDSVILN SA++RG FR
Sbjct: 761  ---------------SMEYLHFRELPAGQNACVAIACYSGYNQEDSVILNQSAIDRGLFR 805

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+F+R+YKD + K+    EEQFEKP+R TC GMR+  Y+K+D+DG++APG+RV+GDD++I
Sbjct: 806  SMFYRAYKDEQKKQTSLMEEQFEKPDRDTCAGMRHGSYEKIDEDGLVAPGVRVAGDDIII 865

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  LP  ED+L   T+R +KRD ST LR+SE GIVDQV+LT + +G+KFCK+RVRS+R
Sbjct: 866  GKTTPLPPQEDDLGPKTRRHTKRDSSTALRSSENGIVDQVILTTSGEGFKFCKVRVRSMR 925

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            +PQIGDKF+SRHGQKGTCG+ YRQE                                   
Sbjct: 926  VPQIGDKFSSRHGQKGTCGMAYRQEDLPWTVEGIVPDIVVNPHAIPSRMTIGQLIECLLG 985

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS++ G+ GDATPF D V V+ IS  L + GYQ+ G+EVM+NGHTGR+++AQ+F+GPTY
Sbjct: 986  KVSASTGDEGDATPFTD-VTVEAISQALHKVGYQMTGHEVMYNGHTGRRMDAQIFIGPTY 1044

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSR+RGPVQIL RQP+EGR+RDGGLRFGEMERDC ISHG+A FLRERL
Sbjct: 1045 YQRLKHMVDDKIHSRSRGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGSAAFLRERL 1104

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            F+ SD YR+HVC+ CGLIAIAN++ N+FEC+ CKNKTQISQVR+PYAAKLLFQELMSM+I
Sbjct: 1105 FDQSDHYRVHVCDICGLIAIANLKKNSFECRRCKNKTQISQVRMPYAAKLLFQELMSMSI 1164

Query: 445  APRL 448
            APR+
Sbjct: 1165 APRM 1168


>gi|8489819|gb|AAF75766.1|AF265351_1 DNA-directed RNA polymerase II polypeptide B [Sus scrofa]
          Length = 381

 Score =  593 bits (1528), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 283/381 (74%), Positives = 320/381 (83%), Gaps = 36/381 (9%)

Query: 107 VILNASAVERGYFRSVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGI 166
           VI+N SAV+RG+FRSVF+RSYK+ ESK+  DQEE FEKP R+TCQGMR+AIYDKLDDDG+
Sbjct: 1   VIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGL 60

Query: 167 IAPGLRVSGDDVVIGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNV 226
           IAPG+RVSGDDV+IGKT+TLPENEDELEGT +R++KRD STFLR SETGIVDQVM+TLN 
Sbjct: 61  IAPGVRVSGDDVIIGKTVTLPENEDELEGTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQ 120

Query: 227 DGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQE--------------------- 265
           +GYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQE                     
Sbjct: 121 EGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIP 180

Query: 266 ---------------VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHT 310
                          VS+NKGEIGDATPFNDAVNVQKIS LL +YGY LRGNEV++NG T
Sbjct: 181 SRMTIGHLIECLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFT 240

Query: 311 GRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDC 370
           GRKI +Q+F+GPTYYQRLKHMVDDKIHSR RGP+QIL RQPMEGR+RDGGLRFGEMERDC
Sbjct: 241 GRKITSQIFIGPTYYQRLKHMVDDKIHSRTRGPIQILNRQPMEGRSRDGGLRFGEMERDC 300

Query: 371 QISHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPY 430
           QI+HGAAQFLRERLFE SDPY+ HVCN CG++AIAN R +T+EC+GC+NKTQIS VR+PY
Sbjct: 301 QIAHGAAQFLRERLFEASDPYQAHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPY 360

Query: 431 AAKLLFQELMSMNIAPRLMVV 451
           A KLLFQELMSM+IAPR+M V
Sbjct: 361 ACKLLFQELMSMSIAPRMMSV 381


>gi|328870070|gb|EGG18445.1| RNA polymerase II core subunit [Dictyostelium fasciculatum]
          Length = 1565

 Score =  591 bits (1523), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 285/484 (58%), Positives = 347/484 (71%), Gaps = 82/484 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITN+ +RMDT+AHVL+YP KPLVTTR                              
Sbjct: 1126 MGVYITNYQLRMDTMAHVLFYPQKPLVTTR------------------------------ 1155

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYL FRELPAG N  VAI CY+GYNQEDSVILN SA++RG FR
Sbjct: 1156 ---------------SMEYLHFRELPAGQNVCVAIACYSGYNQEDSVILNQSAIDRGMFR 1200

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+F+RSYKD + K+    EE FEKP+R T  GMR+  Y+K+D+DG++APG+RV+GDD++I
Sbjct: 1201 SMFYRSYKDEQKKQTSLMEETFEKPDRDTTVGMRHGSYEKIDEDGLVAPGIRVTGDDIII 1260

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  LP  EDEL   T+R SK+D ST +R+SE G+VDQV+LT + DG KF K+RVRS+R
Sbjct: 1261 GKTTPLPPQEDELGPKTRRQSKKDSSTAMRSSENGVVDQVVLTTSGDGLKFTKVRVRSMR 1320

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
             PQIGDKF+SRHGQKGTCG+ YRQE                                   
Sbjct: 1321 TPQIGDKFSSRHGQKGTCGMAYRQEDLPWTVEGVVPDIIVNPHAIPSRMTIGQLIECLLG 1380

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS++ G+ GDATPF D V V+ IS  L + GYQ+ G+EVM+NGHTGR+++AQ+F+GPTY
Sbjct: 1381 KVSASTGDEGDATPFTD-VTVEAISQALHKIGYQMTGHEVMYNGHTGRRMDAQIFIGPTY 1439

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSR+RGPVQIL RQP+EGR+RDGGLRFGEMERDC ISHGAAQFL+ERL
Sbjct: 1440 YQRLKHMVDDKIHSRSRGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGAAQFLKERL 1499

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            F+ SD YR+H+C+ CGLIAIAN+R N+FEC+ CKNKTQISQV++PYAAKLLFQELM+M+I
Sbjct: 1500 FDQSDSYRVHICDICGLIAIANLRKNSFECRRCKNKTQISQVKIPYAAKLLFQELMAMSI 1559

Query: 445  APRL 448
            APR+
Sbjct: 1560 APRM 1563


>gi|313227690|emb|CBY22838.1| unnamed protein product [Oikopleura dioica]
          Length = 1187

 Score =  590 bits (1522), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 281/487 (57%), Positives = 349/487 (71%), Gaps = 81/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            +GV++TNF +RMDT+ ++ +YP KPL  TR                              
Sbjct: 735  VGVFVTNFQIRMDTMGNICFYPQKPLCVTR------------------------------ 764

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRF ELPAGIN+IVA+ CYTGYNQEDS+I+N ++++RG+ R
Sbjct: 765  ---------------SMEYLRFSELPAGINTIVALSCYTGYNQEDSLIMNMASLDRGFHR 809

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+++R Y+D E+K+I D EE FEKP+R T QGMR+A+YDKL+DDG+IAPG R+SGDDV+I
Sbjct: 810  SIYYRGYRDTENKKILDPEETFEKPDRATTQGMRHAMYDKLEDDGLIAPGTRISGDDVMI 869

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKTI L + +D L+ T K+++K+D S F + +E GI+D VM+T+N DGYKF KIR+RSVR
Sbjct: 870  GKTIALQDGDDALDPTAKKYTKKDASLFAKPTEKGIIDSVMVTINEDGYKFVKIRLRSVR 929

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IP++GDKFASRHGQKGT GI  R E                                   
Sbjct: 930  IPEVGDKFASRHGQKGTNGIMLRCEDMLFTPDGMQPDLIVNPHAIPSRMTIGHLFECLTS 989

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             V + KGEIGDATPFN +V VQK+S +L EY YQ RGNEV+++G TGRK+N QVF GPTY
Sbjct: 990  KVGAIKGEIGDATPFNPSVTVQKVSDILHEYEYQQRGNEVLYSGFTGRKMNTQVFFGPTY 1049

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMV+DKIHSRARGPVQ+L RQPMEGR+RDGGLRFGEMERDCQI+HGA+QFL+ERL
Sbjct: 1050 YQRLKHMVNDKIHSRARGPVQLLNRQPMEGRSRDGGLRFGEMERDCQIAHGASQFLKERL 1109

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FEVSDPYR+HVCN CGLI +AN+ +N+FEC+ C NKT ISQVR+PYA KLLFQELMSM I
Sbjct: 1110 FEVSDPYRVHVCNLCGLICVANLTSNSFECRSCSNKTNISQVRMPYACKLLFQELMSMQI 1169

Query: 445  APRLMVV 451
            APR+M +
Sbjct: 1170 APRMMCL 1176


>gi|301616295|ref|XP_002937598.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Xenopus
            (Silurana) tropicalis]
          Length = 1151

 Score =  583 bits (1502), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 300/463 (64%), Positives = 341/463 (73%), Gaps = 58/463 (12%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYP KPLVTTR                              
Sbjct: 733  MGVYITNFHVRMDTLAHVLYYPQKPLVTTR------------------------------ 762

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSV-----ILNASAVE 115
                           SMEYLRFRELPAGINSIVA                  I  A+ ++
Sbjct: 763  ---------------SMEYLRFRELPAGINSIVAXXXXXXXXXXXXXXXXXHISLATNIK 807

Query: 116  RGYF--RSVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRV 173
                   SVF+RSYK+ ESK+  DQEE FEKP R+TCQGMR+AIYDKLDDDG+IAPG+RV
Sbjct: 808  HPSECQESVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRV 867

Query: 174  SGDDVVIGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCK 233
            SGDDV+IGKT+TLPENEDELE T +R++KRD STFLR SETGIVDQVM+TLN +GYKFCK
Sbjct: 868  SGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCK 927

Query: 234  IRVRSVRIPQIG-DKFASRHG--QKGTCG--IQYRQ-EVSSNKGEIGDATPFNDAVNVQK 287
            IR        I  D   + H    + T G  I+  Q +VS+NKGEIGDATPFNDAVNVQK
Sbjct: 928  IRDMPFTCEGITPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATPFNDAVNVQK 987

Query: 288  ISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQIL 347
            IS LL +YGY LRGNEV++NG TGRKI +Q+F+GPTYYQRLKHMVDDKIHSRARGP+QIL
Sbjct: 988  ISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRARGPIQIL 1047

Query: 348  VRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANM 407
             RQPMEGR+RDGGLRFGEMERDCQI+HGAAQFLRERLFE SDPY++HVCN CGL+AIAN 
Sbjct: 1048 NRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGLMAIANT 1107

Query: 408  RNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMV 450
            R +T+EC+GC+NKTQIS VR+PYA KLLFQELMSM+IAPR+M 
Sbjct: 1108 RTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSIAPRMMT 1150


>gi|440801047|gb|ELR22072.1| DNAdirected RNA polymerase, beta subunit [Acanthamoeba castellanii
            str. Neff]
          Length = 1196

 Score =  575 bits (1481), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 282/485 (58%), Positives = 341/485 (70%), Gaps = 85/485 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVY TN+ +RMDTLAHVLYYP KPL+TT S                             
Sbjct: 759  MGVYTTNYQLRMDTLAHVLYYPQKPLITTHS----------------------------- 789

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                            ME+L FR+LP+G N I+AI CY+GYNQEDS+++N S+V+RG+FR
Sbjct: 790  ----------------MEHLHFRKLPSGQNGIIAIACYSGYNQEDSLVMNQSSVDRGFFR 833

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSY D+E K +G  +E+FEKP R+   GMR+  Y+K++DDG+IAPG RVSGDD++I
Sbjct: 834  SVFYRSYVDSE-KHMGQYDEEFEKPIREDTMGMRHGSYEKIEDDGLIAPGTRVSGDDIII 892

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  +  NE++     +RFSK+D S  +R+SETGI+D+VML+ N DGYKFCK+RVRSVR
Sbjct: 893  GKTTPVSPNEEDTRA--QRFSKKDSSISVRSSETGIIDKVMLSTNSDGYKFCKVRVRSVR 950

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
             PQIGDKF+SRHGQKGT GI YRQE                                   
Sbjct: 951  TPQIGDKFSSRHGQKGTVGIMYRQEDMPFNIEGITPDIIVNPHAIPSRMTIGQLIECLMG 1010

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+  GE GDATPF +   V+ IS LL   GYQ RGNEVM+NGHTGRK+ AQ F+GPTY
Sbjct: 1011 KVSATTGEEGDATPFTN-TTVESISDLLHGVGYQRRGNEVMYNGHTGRKLEAQFFIGPTY 1069

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQIL RQP+EGR+RDGGLRFGEMERDC ISHGAAQFL+ERL
Sbjct: 1070 YQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGAAQFLKERL 1129

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            ++ SD YR+HVC+ CG+IAIAN+R NTFEC+ C+NKTQISQV +PYA KLLFQELMSM I
Sbjct: 1130 YDQSDAYRVHVCDLCGMIAIANLRKNTFECRSCRNKTQISQVHIPYACKLLFQELMSMCI 1189

Query: 445  APRLM 449
            APR++
Sbjct: 1190 APRML 1194


>gi|384498030|gb|EIE88521.1| DNA-directed RNA polymerase II subunit RPB2 [Rhizopus delemar RA
            99-880]
          Length = 1193

 Score =  570 bits (1470), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 284/486 (58%), Positives = 337/486 (69%), Gaps = 82/486 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVY+TNF +RMDTLA++LYYP KPL TTR                              
Sbjct: 751  MGVYLTNFQMRMDTLANILYYPQKPLTTTR------------------------------ 780

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SME+LRFRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 781  ---------------SMEFLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 825

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+FFR+Y DAE K      E+FEKP R++   +++  Y+KL++DG+IAPG RVSGDD++I
Sbjct: 826  SLFFRTYMDAEKKAGMMFMEEFEKPTRESTLRLKHGTYEKLEEDGLIAPGTRVSGDDIII 885

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  +P   +EL   T   +KRD ST LR++ETGIVDQVMLT N DG KF K+RVRS R
Sbjct: 886  GKTAPIPAESEELGQRTTTHNKRDASTPLRSTETGIVDQVMLTTNQDGLKFVKVRVRSTR 945

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            +PQ+GDKFASRHGQKGT G+ YRQE                                   
Sbjct: 946  VPQMGDKFASRHGQKGTIGVTYRQEDFPFSAEGITPDLIINPHAIPSRMTIGHMIECLLG 1005

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+  G  GDATPF D V V+ IS  LQ  GYQ RG EVM+NG TGRK+NAQVFLGPTY
Sbjct: 1006 KVSTLTGNEGDATPFTD-VTVEAISQALQAQGYQQRGFEVMYNGFTGRKLNAQVFLGPTY 1064

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQIL RQP+EGR+RDGGLRFGEMERDC ISHG AQFL+ERL
Sbjct: 1065 YQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGVAQFLKERL 1124

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            F+ SD YR+HVC+ CGL+AIAN++ N FEC+ CKNKT+ISQ+ +PYA KLLFQELM+MNI
Sbjct: 1125 FDASDAYRVHVCDICGLMAIANLKKNNFECRSCKNKTRISQIHIPYACKLLFQELMAMNI 1184

Query: 445  APRLMV 450
            APR+ V
Sbjct: 1185 APRMFV 1190


>gi|384497209|gb|EIE87700.1| DNA-directed RNA polymerase II subunit RPB2 [Rhizopus delemar RA
            99-880]
          Length = 1215

 Score =  570 bits (1468), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 284/486 (58%), Positives = 337/486 (69%), Gaps = 82/486 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVY+TNF +RMDTLA++LYYP KPL TTR                              
Sbjct: 773  MGVYLTNFQMRMDTLANILYYPQKPLTTTR------------------------------ 802

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SME+LRFRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 803  ---------------SMEFLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 847

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+FFR+Y DAE K      E+FEKP R++   +++  Y+KL++DG+IAPG RVSGDD++I
Sbjct: 848  SLFFRTYMDAEKKAGMMFMEEFEKPTRESTLRLKHGTYEKLEEDGLIAPGTRVSGDDIII 907

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  +P   +EL   T   +KRD ST LR++ETGIVDQVMLT N DG KF K+RVRS R
Sbjct: 908  GKTAPIPAESEELGQRTTTHNKRDASTPLRSTETGIVDQVMLTTNQDGLKFVKVRVRSTR 967

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            +PQ+GDKFASRHGQKGT G+ YRQE                                   
Sbjct: 968  VPQMGDKFASRHGQKGTIGVTYRQEDFPFSAEGITPDLIINPHAIPSRMTIGHLIECLLG 1027

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+  G  GDATPF D V V+ IS  LQ  GYQ RG EVM+NG TGRK+NAQVFLGPTY
Sbjct: 1028 KVSTLTGNEGDATPFTD-VTVEAISQALQAQGYQQRGFEVMYNGFTGRKLNAQVFLGPTY 1086

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQIL RQP+EGR+RDGGLRFGEMERDC ISHG AQFL+ERL
Sbjct: 1087 YQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGVAQFLKERL 1146

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            F+ SD YR+HVC+ CGL+AIAN++ N FEC+ CKNKT+ISQ+ +PYA KLLFQELM+MNI
Sbjct: 1147 FDASDAYRVHVCDICGLMAIANLKKNNFECRSCKNKTRISQIHIPYACKLLFQELMAMNI 1206

Query: 445  APRLMV 450
            APR+ V
Sbjct: 1207 APRMFV 1212


>gi|168027816|ref|XP_001766425.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162682334|gb|EDQ68753.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1185

 Score =  559 bits (1441), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 272/486 (55%), Positives = 338/486 (69%), Gaps = 84/486 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG+Y+TN+ +RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 733  MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA----------------------------- 763

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                            ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 764  ----------------MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 807

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+F+RSY+D E K+    +E+FE+PNR+   GMR+  YDKLDDDG+  PG RVSG+DV+I
Sbjct: 808  SIFYRSYRDEEKKQGTLIKEEFERPNRENTTGMRHGSYDKLDDDGLAPPGTRVSGEDVII 867

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  LP++++  +   +R++KRD ST LR+SE+G++DQV+LT N DG +F KIRVRS+R
Sbjct: 868  GKTTPLPQDDNASQA--QRYTKRDQSTCLRHSESGMIDQVLLTTNADGLRFVKIRVRSIR 925

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 926  IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTQEGITPDIIVNPHAIPSRMTIGQLIECIMG 985

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             V+++ G+ GDATPF D V V  IS  L + GYQ+RG EVM+NGHTGR++ A +FLGPTY
Sbjct: 986  KVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFEVMYNGHTGRRLTAHIFLGPTY 1044

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGGLRFGEMERDC I+HGAA FL+ERL
Sbjct: 1045 YQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERL 1104

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            F+ SD YR+HVC  CG+IAIAN++ NT+EC+GCKN T I QV +PYA KLLFQELMSM I
Sbjct: 1105 FDQSDAYRVHVCEHCGIIAIANLKKNTYECRGCKNNTDIVQVHIPYACKLLFQELMSMAI 1164

Query: 445  APRLMV 450
            APR+  
Sbjct: 1165 APRMFT 1170


>gi|357120315|ref|XP_003561873.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
            [Brachypodium distachyon]
          Length = 1228

 Score =  557 bits (1436), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 275/486 (56%), Positives = 336/486 (69%), Gaps = 84/486 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG+Y+TN+ +RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 779  MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA----------------------------- 809

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                            ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 810  ----------------MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 853

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+FFRSY+D E K     +E+F +PNR+   GMR+  YDKLDDDG+  PG RVSG+DV+I
Sbjct: 854  SLFFRSYRDEEKKMGTLVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 913

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  +P+  D+ +G   R+SKRD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVR
Sbjct: 914  GKTSPIPQ--DDAQGQATRYSKRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVR 971

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 972  IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGITPDIIVNPHAIPSRMTIGQLIECIMG 1031

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGRK+ A +FLGPTY
Sbjct: 1032 KVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRKLTAMIFLGPTY 1090

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGGLRFGEMERDC I+HGAA FL+ERL
Sbjct: 1091 YQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAFFLKERL 1150

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            F+ SD YR+HVC  CGLIAIAN++ N+FEC+GCKNKT I QV +PYA KLLFQELM+M I
Sbjct: 1151 FDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAI 1210

Query: 445  APRLMV 450
            APR++ 
Sbjct: 1211 APRMLT 1216


>gi|67810558|gb|AAY81998.1| RNA polymerase II second largest subunit [Spirogyra sp. UWCC FW670]
          Length = 670

 Score =  556 bits (1434), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 275/486 (56%), Positives = 335/486 (68%), Gaps = 84/486 (17%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+ +RMDTLA++LYYP KPLVTTR+                             
Sbjct: 224 MGIYVTNYQLRMDTLAYILYYPQKPLVTTRA----------------------------- 254

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FRELPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+ R
Sbjct: 255 ----------------MEHLHFRELPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFHR 298

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+F+RSY+D E K+    +E+FEKPNR    GMR+  YDKLD DGI  PG RV+G+DV+I
Sbjct: 299 SIFYRSYRDEEKKQGTLTKEEFEKPNRDITSGMRHGSYDKLDSDGIAPPGTRVAGEDVII 358

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT+ LP+++   +   +RF+KRD ST LR+SE+G++DQV+LT+N DG++F KIRVRS+R
Sbjct: 359 GKTMPLPQDDSGTQA--QRFTKRDQSTTLRHSESGMIDQVILTINNDGFRFVKIRVRSIR 416

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT G+ Y QE                                   
Sbjct: 417 IPQIGDKFASRHGQKGTIGMTYTQEDMPFSQEGISPDLVVNPHAIPSRMTIGHLIECLMG 476

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G+ GDATPF D V V  IS  L   GYQ+RG EVM+NGHTGRK+ A +FLGPTY
Sbjct: 477 KVAALMGKEGDATPFTD-VTVDSISRALHSCGYQMRGFEVMYNGHTGRKLQAHIFLGPTY 535

Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
           YQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGGLRFGEMERDC I+HGAA FL+ERL
Sbjct: 536 YQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERL 595

Query: 385 FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
           F+ SD YR+HVC  CGLIA AN++ + FEC+GCKNKT I QV +PYA KLLFQELMSM I
Sbjct: 596 FDQSDAYRVHVCEHCGLIANANLKKSFFECRGCKNKTDIVQVHIPYACKLLFQELMSMAI 655

Query: 445 APRLMV 450
           APR+M 
Sbjct: 656 APRMMT 661


>gi|222625458|gb|EEE59590.1| hypothetical protein OsJ_11898 [Oryza sativa Japonica Group]
          Length = 1218

 Score =  556 bits (1434), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 274/486 (56%), Positives = 336/486 (69%), Gaps = 84/486 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG+Y+TN+ +RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 769  MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA----------------------------- 799

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                            ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 800  ----------------MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 843

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+FFRSY+D E K     +E+F +PNR+   GMR+  YDKLDDDG+  PG RVSG+DV+I
Sbjct: 844  SLFFRSYRDEEKKMGTLVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 903

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  +P+  D+ +G   R++KRD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVR
Sbjct: 904  GKTSPIPQ--DDAQGQATRYTKRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVR 961

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 962  IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGITPDIIVNPHAIPSRMTIGQLIECIMG 1021

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGRK+ A +FLGPTY
Sbjct: 1022 KVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRKLTAMIFLGPTY 1080

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGGLRFGEMERDC I+HGAA FL+ERL
Sbjct: 1081 YQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAFFLKERL 1140

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            F+ SD YR+HVC  CGLIAIAN++ N+FEC+GCKNKT I QV +PYA KLLFQELM+M I
Sbjct: 1141 FDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAI 1200

Query: 445  APRLMV 450
            APR++ 
Sbjct: 1201 APRMLT 1206


>gi|108710089|gb|ABF97884.1| DNA-directed RNA polymerase II 135 kDa polypeptide, putative,
            expressed [Oryza sativa Japonica Group]
 gi|125545063|gb|EAY91202.1| hypothetical protein OsI_12811 [Oryza sativa Indica Group]
          Length = 1222

 Score =  556 bits (1433), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 274/486 (56%), Positives = 336/486 (69%), Gaps = 84/486 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG+Y+TN+ +RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 773  MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA----------------------------- 803

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                            ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 804  ----------------MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 847

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+FFRSY+D E K     +E+F +PNR+   GMR+  YDKLDDDG+  PG RVSG+DV+I
Sbjct: 848  SLFFRSYRDEEKKMGTLVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 907

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  +P+  D+ +G   R++KRD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVR
Sbjct: 908  GKTSPIPQ--DDAQGQATRYTKRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVR 965

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 966  IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGITPDIIVNPHAIPSRMTIGQLIECIMG 1025

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGRK+ A +FLGPTY
Sbjct: 1026 KVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRKLTAMIFLGPTY 1084

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGGLRFGEMERDC I+HGAA FL+ERL
Sbjct: 1085 YQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAFFLKERL 1144

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            F+ SD YR+HVC  CGLIAIAN++ N+FEC+GCKNKT I QV +PYA KLLFQELM+M I
Sbjct: 1145 FDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAI 1204

Query: 445  APRLMV 450
            APR++ 
Sbjct: 1205 APRMLT 1210


>gi|70794986|gb|AAZ08467.1| RNA polymerase II second largest subunit [Linanthus californicus]
          Length = 733

 Score =  555 bits (1430), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 276/486 (56%), Positives = 329/486 (67%), Gaps = 82/486 (16%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+  RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 282 MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA----------------------------- 312

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FRELPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 313 ----------------MEHLHFRELPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 356

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY+D E K     +E F +P+R    GMR+  YDKLDDDG+  PG RVSG+DV+I
Sbjct: 357 SLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 416

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +  +E    G   R++KRD ST LR+SETGIVDQV+LT N DG +F K+RVRSVR
Sbjct: 417 GKTTPIAPDEATQGGPAARYTKRDHSTSLRHSETGIVDQVLLTTNADGLRFVKVRVRSVR 476

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 477 IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGICPDIIVNPHAIPSRMTIGQLIECIMG 536

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGR++ A +FLGPTY
Sbjct: 537 KVAAXMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLPAXIFLGPTY 595

Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
           YQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGGLRFGEMERDC I+HGAA FL+ERL
Sbjct: 596 YQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERL 655

Query: 385 FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
           F+ SD YR+HVC  CGL+AIAN++ N+FEC+GCKNKT I QV +PYA KLLFQELMSM I
Sbjct: 656 FDQSDAYRVHVCERCGLVAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMSMAI 715

Query: 445 APRLMV 450
           APR+M 
Sbjct: 716 APRMMT 721


>gi|302781178|ref|XP_002972363.1| hypothetical protein SELMODRAFT_172903 [Selaginella moellendorffii]
 gi|300159830|gb|EFJ26449.1| hypothetical protein SELMODRAFT_172903 [Selaginella moellendorffii]
          Length = 1178

 Score =  555 bits (1430), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 274/486 (56%), Positives = 334/486 (68%), Gaps = 84/486 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG+Y+TN+ +RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 728  MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA----------------------------- 758

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                            ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 759  ----------------MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 802

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+F+RSY+D E K     +E+FE+PNR+T  GMR+  YDKLDDDGI  PG RVSG+DV+I
Sbjct: 803  SIFYRSYRDEEKKAGTLVKEEFERPNRETTTGMRHGSYDKLDDDGIAPPGTRVSGEDVII 862

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT   P  +DE     +R+SKRD ST LR+SE+G++DQV+LT N DG +F K RVRS+R
Sbjct: 863  GKTT--PLAQDETGTQAQRYSKRDQSTCLRHSESGMIDQVLLTTNADGLRFVKTRVRSIR 920

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 921  IPQIGDKFSSRHGQKGTIGMTYTQEDMPFTQEGITPDIIVNPHAIPSRMTIGQLIECIMG 980

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             V++  G+ GDATPF D V V  IS  L +  YQLRG E M+NGHTGR+++A +F+GPTY
Sbjct: 981  KVAALMGKEGDATPFTD-VTVDNISKALHKCNYQLRGFETMYNGHTGRRLSAMIFIGPTY 1039

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGGLRFGEMERDC I+HGAA FL+ERL
Sbjct: 1040 YQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERL 1099

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            F+ SD YR+HVC  CGLIAIAN++ NTFEC+ CKNKT+I QV +PYA KLLFQELM+M I
Sbjct: 1100 FDQSDAYRVHVCEHCGLIAIANLKKNTFECRSCKNKTEIVQVHIPYACKLLFQELMAMAI 1159

Query: 445  APRLMV 450
            APR+ +
Sbjct: 1160 APRMFM 1165


>gi|302780123|ref|XP_002971836.1| hypothetical protein SELMODRAFT_148107 [Selaginella moellendorffii]
 gi|300160135|gb|EFJ26753.1| hypothetical protein SELMODRAFT_148107 [Selaginella moellendorffii]
          Length = 1178

 Score =  554 bits (1428), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 274/486 (56%), Positives = 334/486 (68%), Gaps = 84/486 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG+Y+TN+ +RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 728  MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA----------------------------- 758

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                            ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 759  ----------------MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 802

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+F+RSY+D E K     +E+FE+PNR+T  GMR+  YDKLDDDGI  PG RVSG+DV+I
Sbjct: 803  SIFYRSYRDEEKKAGTLVKEEFERPNRETTTGMRHGSYDKLDDDGIAPPGTRVSGEDVII 862

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT   P  +DE     +R+SKRD ST LR+SE+G++DQV+LT N DG +F K RVRS+R
Sbjct: 863  GKTT--PLVQDETGTQAQRYSKRDQSTCLRHSESGMIDQVLLTTNADGLRFVKTRVRSIR 920

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 921  IPQIGDKFSSRHGQKGTIGMTYTQEDMPFTQEGITPDIIVNPHAIPSRMTIGQLIECIMG 980

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             V++  G+ GDATPF D V V  IS  L +  YQLRG E M+NGHTGR+++A +F+GPTY
Sbjct: 981  KVAALMGKEGDATPFTD-VTVDNISKALHKCNYQLRGFETMYNGHTGRRLSAMIFIGPTY 1039

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGGLRFGEMERDC I+HGAA FL+ERL
Sbjct: 1040 YQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERL 1099

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            F+ SD YR+HVC  CGLIAIAN++ NTFEC+ CKNKT+I QV +PYA KLLFQELM+M I
Sbjct: 1100 FDQSDAYRVHVCEHCGLIAIANLKKNTFECRSCKNKTEIVQVHIPYACKLLFQELMAMAI 1159

Query: 445  APRLMV 450
            APR+ +
Sbjct: 1160 APRMFM 1165


>gi|225446351|ref|XP_002274051.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Vitis
            vinifera]
 gi|147841183|emb|CAN72948.1| hypothetical protein VITISV_033708 [Vitis vinifera]
 gi|302143287|emb|CBI21848.3| unnamed protein product [Vitis vinifera]
          Length = 1193

 Score =  554 bits (1428), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 272/486 (55%), Positives = 335/486 (68%), Gaps = 84/486 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG+Y+TN+ +RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 742  MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA----------------------------- 772

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                            ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 773  ----------------MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 816

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+FFRSY+D E K     +E F +PNR+   GMR+  YDKLDDDG+  PG RVSG+DV+I
Sbjct: 817  SLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 876

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT   P ++D+ +G   R+++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVR
Sbjct: 877  GKTT--PISQDDSQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVR 934

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 935  IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMG 994

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGR++ A +FLGPTY
Sbjct: 995  KVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTY 1053

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGGLRFGEMERDC I+HGAA FL+ERL
Sbjct: 1054 YQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERL 1113

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            F+ SD YR+HVC  CGLIAIAN++ N+FEC+GCKNKT I QV +PYA KLLFQELM+M I
Sbjct: 1114 FDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAI 1173

Query: 445  APRLMV 450
            APR++ 
Sbjct: 1174 APRMLT 1179


>gi|242038711|ref|XP_002466750.1| hypothetical protein SORBIDRAFT_01g013470 [Sorghum bicolor]
 gi|241920604|gb|EER93748.1| hypothetical protein SORBIDRAFT_01g013470 [Sorghum bicolor]
          Length = 1218

 Score =  553 bits (1426), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 274/486 (56%), Positives = 332/486 (68%), Gaps = 84/486 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG+Y+TN+ +RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 769  MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA----------------------------- 799

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                            ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 800  ----------------MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 843

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+FFRSY+D E K     +E+F +PNR+   GMR+  YDKLDDDG+  PG RVSG+DV+I
Sbjct: 844  SLFFRSYRDEEKKMGTLVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 903

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  +P+  D+ +G   R+SKRD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVR
Sbjct: 904  GKTSPIPQ--DDAQGQASRYSKRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVR 961

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 962  IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGITPDIIVNPHAIPSRMTIGQLIECIMG 1021

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             V++  G  GDATPF D V V  IS  L    YQ+RG E M+NGHTGRK+ A +FLGPTY
Sbjct: 1022 KVAAQMGREGDATPFTD-VTVDNISKALHRCNYQMRGFETMYNGHTGRKLTAMIFLGPTY 1080

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGGLRFGEMERDC I+HGAA FL+ERL
Sbjct: 1081 YQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAFFLKERL 1140

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            F+ SD YR+HVC  CGLIAIAN++ N+FEC+GCKNKT I QV +PYA KLLFQELM+M I
Sbjct: 1141 FDQSDAYRVHVCEKCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAI 1200

Query: 445  APRLMV 450
            APR++ 
Sbjct: 1201 APRMLT 1206


>gi|70794966|gb|AAZ08457.1| RNA polymerase II second largest subunit [Rhododendron macrophyllum]
          Length = 1191

 Score =  553 bits (1426), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 275/486 (56%), Positives = 332/486 (68%), Gaps = 84/486 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG+Y+TN+  RMDT+A+VLYYP KPLVTTR+                             
Sbjct: 740  MGIYVTNYQFRMDTVAYVLYYPQKPLVTTRA----------------------------- 770

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                            ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 771  ----------------MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 814

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+FFRSY+D E K     +E F +P+R    GMR+  YDKLDDDG+  PG RVSG+DVVI
Sbjct: 815  SLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVVI 874

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT   P  +DE +G   R+++RD ST LR+SETG+VDQV+LT N DG +F K+RVRSVR
Sbjct: 875  GKTT--PIAQDEAQGPAARYTRRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVR 932

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 933  IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTMEGITPDIIVNPHAIPSRMTIGQLIECIMG 992

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGR++ + +FLGPTY
Sbjct: 993  KVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTSMIFLGPTY 1051

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGGLRFGEMERDC I+HGAA FL+ERL
Sbjct: 1052 YQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERL 1111

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            F+ SD YRIHVC  CGLIAIAN++ N+FEC+GCKNKT I QV +PYA KLLFQELMSM I
Sbjct: 1112 FDQSDAYRIHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMSMAI 1171

Query: 445  APRLMV 450
            APR++ 
Sbjct: 1172 APRMLT 1177


>gi|68300814|gb|AAY89348.1| RNA polymerase II second largest subunit [Antirrhinum majus]
          Length = 1200

 Score =  553 bits (1426), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 274/486 (56%), Positives = 332/486 (68%), Gaps = 84/486 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG+Y+TN+  RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 749  MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA----------------------------- 779

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                            ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 780  ----------------MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 823

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+FFRSY+D E K     +E F +P+R    GMR+  YDKLDDDG+  PG R SG+DV+I
Sbjct: 824  SLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRCSGEDVII 883

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT   P + D+ +G   R++KRD ST LR+SETG+VDQV+LT N DG +F K+RVRSVR
Sbjct: 884  GKTT--PISPDDAQGQAARYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVR 941

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 942  IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGISPDIIVNPHAIPSRMTIGQLIECIMG 1001

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGR++++ +FLGPTY
Sbjct: 1002 KVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLSSMIFLGPTY 1060

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGGLRFGEMERDC I+HGAA FL+ERL
Sbjct: 1061 YQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERL 1120

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            F+ SD YRIHVC  CGLIAIAN++ N+FEC+GCKNKT I QV +PYA KLLFQELMSM I
Sbjct: 1121 FDQSDAYRIHVCEQCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMSMAI 1180

Query: 445  APRLMV 450
            APR++ 
Sbjct: 1181 APRMLT 1186


>gi|328769515|gb|EGF79559.1| RNA polymerase II second largest subunit precursor [Batrachochytrium
            dendrobatidis JAM81]
          Length = 1312

 Score =  553 bits (1425), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 267/487 (54%), Positives = 337/487 (69%), Gaps = 82/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG+++TNF +RMDT++++L+YP KPL TTR+                             
Sbjct: 872  MGLFLTNFQLRMDTMSNILFYPQKPLATTRA----------------------------- 902

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                            ME++ FR+LPAGIN++VAI CY+GYNQEDS+I+N S+++RG FR
Sbjct: 903  ----------------MEFMHFRDLPAGINAVVAIACYSGYNQEDSLIMNQSSIDRGLFR 946

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+++R Y D E K      E  EKP+R T   +++  Y+KL+DDG+IAPG+RVSG+D++I
Sbjct: 947  SLYYRVYMDQEKKVGMISTETLEKPSRDTTLRLKHGTYEKLEDDGLIAPGVRVSGEDIII 1006

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT+ +  +  EL   T   +KRD ST L+++E GIVDQV++T N DG+KF K+RVRS+R
Sbjct: 1007 GKTVPIAADSTELGQRTTMHTKRDASTPLKSTENGIVDQVLITTNQDGFKFVKVRVRSIR 1066

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IP +GDKFASRHGQKGT GI YR E                                   
Sbjct: 1067 IPHMGDKFASRHGQKGTVGITYRTEDMPFTADGITPDLIINPHAIPSRMTIGHLVECLLS 1126

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+  G+ GDATPF D V V+ IS  LQ YGYQ RG EV++NGHTGRK+NAQV+ GPTY
Sbjct: 1127 KVSTFTGDEGDATPFTD-VTVEAISQALQGYGYQRRGFEVLYNGHTGRKLNAQVYTGPTY 1185

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGP+QIL RQP+EGR+RDGGLRFGEMERDC ISHGAA FL+ERL
Sbjct: 1186 YQRLKHMVDDKIHSRARGPLQILTRQPVEGRSRDGGLRFGEMERDCMISHGAANFLKERL 1245

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            F+ SD YR+HVC+ CGL+A+AN++ N+FEC+ C+NKTQISQV LPYA KLLFQELM+MNI
Sbjct: 1246 FDASDAYRVHVCDHCGLMAVANLKKNSFECRSCRNKTQISQVYLPYACKLLFQELMAMNI 1305

Query: 445  APRLMVV 451
            APRLMVV
Sbjct: 1306 APRLMVV 1312


>gi|357438193|ref|XP_003589372.1| DNA-directed RNA polymerase [Medicago truncatula]
 gi|355478420|gb|AES59623.1| DNA-directed RNA polymerase [Medicago truncatula]
          Length = 1213

 Score =  553 bits (1424), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 275/486 (56%), Positives = 333/486 (68%), Gaps = 84/486 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG+Y+TN+  RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 762  MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA----------------------------- 792

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                            ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 793  ----------------MEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFR 836

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+FFRSY+D E K     +E F +P+R    GMR+  YDKLDDDG+  PG RVSG+DV+I
Sbjct: 837  SLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 896

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT   P +++E +G   R+SKRD S  LR+SETGIVDQV+LT N DG +F K+RVRSVR
Sbjct: 897  GKTT--PLSQEEQQGQAARYSKRDHSISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVR 954

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 955  IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMG 1014

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGR+++A +FLGPTY
Sbjct: 1015 KVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTY 1073

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGGLRFGEMERDC I+HGAA FL+ERL
Sbjct: 1074 YQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERL 1133

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            F+ SD YR+HVC  CGLIAIAN++ N+FEC+GCKNKT I QV +PYA KLLFQELM+M I
Sbjct: 1134 FDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVYIPYACKLLFQELMAMAI 1193

Query: 445  APRLMV 450
            APR++ 
Sbjct: 1194 APRMLT 1199


>gi|350534526|ref|NP_001233889.1| DNA-directed RNA polymerase II subunit RPB2 [Solanum lycopersicum]
 gi|11134656|sp|Q42877.1|RPB2_SOLLC RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA
            polymerase II subunit 2; Short=RNA polymerase II subunit
            B2; AltName: Full=DNA-directed RNA polymerase II 135 kDa
            polypeptide
 gi|1049068|gb|AAC49273.1| RNA polymerase II subunit 2 [Solanum lycopersicum]
          Length = 1191

 Score =  552 bits (1423), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 272/486 (55%), Positives = 335/486 (68%), Gaps = 84/486 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG+Y+TN+  RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 740  MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA----------------------------- 770

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                            ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 771  ----------------MEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFR 814

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+FFRSY+D E K     +E F +P+R +  GMR+  YDKLDDDG+  PG RVSG+DV+I
Sbjct: 815  SLFFRSYRDEEKKMGTLVKEDFGRPDRASTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 874

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT   P ++D+ +G   R++++D ST LR+SETG+VDQV+LT N DG +F K+RVRSVR
Sbjct: 875  GKTT--PISQDDAQGQASRYTRKDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVR 932

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 933  IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMG 992

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGR+++A +FLGPTY
Sbjct: 993  KVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTY 1051

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGGLRFGEMERDC I+HGAA FL+ERL
Sbjct: 1052 YQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERL 1111

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            F+ SD YR+HVC  CGLIAIAN++ N+FEC+GCKNKT I QV +PYA KLLFQELM+M I
Sbjct: 1112 FDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAI 1171

Query: 445  APRLMV 450
            APR++ 
Sbjct: 1172 APRMLT 1177


>gi|388582011|gb|EIM22317.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
            [Wallemia sebi CBS 633.66]
          Length = 1198

 Score =  552 bits (1423), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 271/484 (55%), Positives = 333/484 (68%), Gaps = 82/484 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV++TNF  RMDTL+++LYYP KPL TTR                              
Sbjct: 750  MGVHLTNFQQRMDTLSNILYYPQKPLATTR------------------------------ 779

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N SA++RG FR
Sbjct: 780  ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSAIDRGLFR 824

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+F+RSY D E K      E+FEKP R+TC  M++  YDK+++DG+IAPG  V+GDD++I
Sbjct: 825  SIFYRSYMDTEKKVGTMLLEEFEKPTRETCLRMKHGTYDKIENDGLIAPGTAVTGDDIII 884

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  +P + +EL   TK  +KRD ST L+++E GIVDQV++T N DG KF K+R+RS R
Sbjct: 885  GKTAPIPPDSEELGQRTKLHTKRDVSTPLKSTENGIVDQVLVTTNADGLKFSKVRMRSTR 944

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGT GI YR E                                   
Sbjct: 945  IPQIGDKFASRHGQKGTIGITYRNEDMPFTSDGITPDLIINPHAIPSRMTIGHLVECLLS 1004

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             V++ +G  GDATPF + V V+ IS++L E GYQ RG EVM+NGHTGRK+ AQV++GPTY
Sbjct: 1005 KVATLQGSEGDATPFTE-VTVESISSILHEKGYQKRGLEVMYNGHTGRKLQAQVYIGPTY 1063

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIH+RARGPVQIL RQP+EGR+RDGGLRFGEMERDC I+HG A FL+ERL
Sbjct: 1064 YQRLKHMVDDKIHARARGPVQILTRQPVEGRSRDGGLRFGEMERDCMIAHGVAAFLKERL 1123

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            F+ SD YR+HVC+ CG+ AIAN++  TFEC+ C+NKT ISQ+ +PYAAKLLFQEL SM I
Sbjct: 1124 FDASDAYRLHVCDLCGMTAIANLKKQTFECRACRNKTDISQIHVPYAAKLLFQELQSMGI 1183

Query: 445  APRL 448
            +PRL
Sbjct: 1184 SPRL 1187


>gi|68300812|gb|AAY89347.1| RNA polymerase II second largest subunit [Petunia x hybrida]
          Length = 1195

 Score =  552 bits (1423), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 272/486 (55%), Positives = 334/486 (68%), Gaps = 84/486 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG+Y+TN+  RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 744  MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA----------------------------- 774

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                            ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 775  ----------------MEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFR 818

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+FFRSY+D E K     +E F +P+R +  GMR+  YDKLDDDG+  PG RVSG+DV+I
Sbjct: 819  SLFFRSYRDEEKKMGTLVKEDFGRPDRASTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 878

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT   P ++D+ +G   R++++D ST LR+SETG+VDQV+LT N DG +F K+RVRSVR
Sbjct: 879  GKTT--PISQDDAQGQASRYTRKDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVR 936

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 937  IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGITPDIIVNPHAIPSRMTIGQLIECIMG 996

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGR++ A +FLGPTY
Sbjct: 997  KVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLPAMIFLGPTY 1055

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGGLRFGEMERDC I+HGAA FL+ERL
Sbjct: 1056 YQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERL 1115

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            F+ SD YR+HVC  CGLIAIAN++ N+FEC+GCKNKT I QV +PYA KLLFQELM+M I
Sbjct: 1116 FDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAI 1175

Query: 445  APRLMV 450
            APR++ 
Sbjct: 1176 APRMLT 1181


>gi|16486|emb|CAA79528.1| RNA polymerase II second largest subunit [Arabidopsis thaliana]
          Length = 1188

 Score =  552 bits (1422), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 274/486 (56%), Positives = 333/486 (68%), Gaps = 84/486 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG+Y+TN+  RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 741  MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA----------------------------- 771

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                            ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 772  ----------------MEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFR 815

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+FFRSY+D E K     +E F +P+R +  GMR+  YDKLDDDG+  PG RVSG+DV+I
Sbjct: 816  SLFFRSYRDEEKKMGTLVKEDFGRPDRGSTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 875

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT   P ++DE +G + R+++RD S  LR+SETG+VDQV+LT N DG +F K+RVRSVR
Sbjct: 876  GKTT--PISQDEAQGQSSRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVR 933

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 934  IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGVTPDIIVNPHAIPSRMTIGQLIECIMG 993

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGR + A +FLGPTY
Sbjct: 994  KVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFERMYNGHTGRPLTAMIFLGPTY 1052

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGGLRFGEMERDC I+HGAA FL+ERL
Sbjct: 1053 YQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERL 1112

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            F+ SD YR+HVC  CGLIAIAN++ N+FEC+GCKNKT I QV +PYA KLLFQELMSM I
Sbjct: 1113 FDQSDAYRVHVCEVCGLIAIANLKKNSFECRGCKNKTDIVQVYIPYACKLLFQELMSMAI 1172

Query: 445  APRLMV 450
            APR++ 
Sbjct: 1173 APRMLT 1178


>gi|255556051|ref|XP_002519060.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
 gi|223541723|gb|EEF43271.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
          Length = 1194

 Score =  552 bits (1422), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 273/486 (56%), Positives = 332/486 (68%), Gaps = 84/486 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG+Y+TN+  RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 743  MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA----------------------------- 773

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                            ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 774  ----------------MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 817

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+FFRSY+D E K     +E F +P+R    GMR+  YDKLDDDG+  PG RVSG+DV+I
Sbjct: 818  SLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 877

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT   P  ++E +G + R+++RD S  LR+SETGIVDQV+LT N DG +F K+RVRSVR
Sbjct: 878  GKTT--PIAQEEAQGQSARYTRRDHSISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVR 935

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 936  IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMG 995

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGR++ A +FLGPTY
Sbjct: 996  KVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTY 1054

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGGLRFGEMERDC I+HGAA FL+ERL
Sbjct: 1055 YQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERL 1114

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            F+ SD YR+HVC  CGLIAIAN++ N+FEC+GCKNKT I QV +PYA KLLFQELM+M I
Sbjct: 1115 FDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAI 1174

Query: 445  APRLMV 450
            APR++ 
Sbjct: 1175 APRMLT 1180


>gi|297799890|ref|XP_002867829.1| hypothetical protein ARALYDRAFT_492703 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297313665|gb|EFH44088.1| hypothetical protein ARALYDRAFT_492703 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1188

 Score =  552 bits (1422), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 274/486 (56%), Positives = 333/486 (68%), Gaps = 84/486 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG+Y+TN+  RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 741  MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA----------------------------- 771

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                            ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 772  ----------------MEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFR 815

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+FFRSY+D E K     +E F +P+R +  GMR+  YDKLDDDG+  PG RVSG+DV+I
Sbjct: 816  SLFFRSYRDEEKKMGTLVKEDFGRPDRGSTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 875

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT   P ++DE +G + R+++RD S  LR+SETG+VDQV+LT N DG +F K+RVRSVR
Sbjct: 876  GKTT--PISQDEAQGQSSRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVR 933

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 934  IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGVTPDIIVNPHAIPSRMTIGQLIECIMG 993

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGR + A +FLGPTY
Sbjct: 994  KVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFERMYNGHTGRPLTAMIFLGPTY 1052

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGGLRFGEMERDC I+HGAA FL+ERL
Sbjct: 1053 YQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERL 1112

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            F+ SD YR+HVC  CGLIAIAN++ N+FEC+GCKNKT I QV +PYA KLLFQELMSM I
Sbjct: 1113 FDQSDAYRVHVCEVCGLIAIANLKKNSFECRGCKNKTDIVQVYIPYACKLLFQELMSMAI 1172

Query: 445  APRLMV 450
            APR++ 
Sbjct: 1173 APRMLT 1178


>gi|15234572|ref|NP_193902.1| DNA-directed RNA polymerase II subunit RPB2 [Arabidopsis thaliana]
 gi|21542437|sp|P38420.2|RPB2_ARATH RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA
            polymerase II subunit 2; Short=RNA polymerase II subunit
            B2; AltName: Full=DNA-directed RNA polymerase II 135 kDa
            polypeptide; AltName: Full=Protein EMBRYO DEFECTIVE 1989
 gi|4455279|emb|CAB36815.1| DNA-directed RNA polymerase (EC 2.7.7.6) II second largest chain
            [Arabidopsis thaliana]
 gi|7268968|emb|CAB81278.1| DNA-directed RNA polymerase (EC 2.7.7.6) II second largest chain
            [Arabidopsis thaliana]
 gi|332659093|gb|AEE84493.1| DNA-directed RNA polymerase II subunit RPB2 [Arabidopsis thaliana]
          Length = 1188

 Score =  552 bits (1422), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 274/486 (56%), Positives = 333/486 (68%), Gaps = 84/486 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG+Y+TN+  RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 741  MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA----------------------------- 771

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                            ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 772  ----------------MEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFR 815

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+FFRSY+D E K     +E F +P+R +  GMR+  YDKLDDDG+  PG RVSG+DV+I
Sbjct: 816  SLFFRSYRDEEKKMGTLVKEDFGRPDRGSTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 875

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT   P ++DE +G + R+++RD S  LR+SETG+VDQV+LT N DG +F K+RVRSVR
Sbjct: 876  GKTT--PISQDEAQGQSSRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVR 933

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 934  IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGVTPDIIVNPHAIPSRMTIGQLIECIMG 993

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGR + A +FLGPTY
Sbjct: 994  KVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFERMYNGHTGRPLTAMIFLGPTY 1052

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGGLRFGEMERDC I+HGAA FL+ERL
Sbjct: 1053 YQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERL 1112

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            F+ SD YR+HVC  CGLIAIAN++ N+FEC+GCKNKT I QV +PYA KLLFQELMSM I
Sbjct: 1113 FDQSDAYRVHVCEVCGLIAIANLKKNSFECRGCKNKTDIVQVYIPYACKLLFQELMSMAI 1172

Query: 445  APRLMV 450
            APR++ 
Sbjct: 1173 APRMLT 1178


>gi|326436004|gb|EGD81574.1| DNA-directed RNA polymerase II polypeptide [Salpingoeca sp. ATCC
            50818]
          Length = 1193

 Score =  551 bits (1421), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 270/486 (55%), Positives = 330/486 (67%), Gaps = 83/486 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG+Y TNFH+R+DTLAHVLYYP +PLV TR                              
Sbjct: 750  MGIYTTNFHIRLDTLAHVLYYPQQPLVKTR------------------------------ 779

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SM+Y+ F++LPAGIN+IVAI+CYTGYNQEDSVI+N  AV+RG FR
Sbjct: 780  ---------------SMDYMYFKDLPAGINAIVAIMCYTGYNQEDSVIMNKCAVDRGLFR 824

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSY  +E +  G +  +FEKP+R+TC GMRN+ Y KL+DDG+IAPG  V+GDD +I
Sbjct: 825  SVFYRSYASSE-ENTGREVIKFEKPSRETCAGMRNSNYGKLEDDGLIAPGTSVTGDDAII 883

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            G+T+ LP N +  +    RF K D S FLR SE GI+DQVM+ +   G +F KIRVRS+R
Sbjct: 884  GRTMELPPNAEARDSRLARFEKLDKSVFLRASENGIIDQVMVAMGPKGTRFVKIRVRSIR 943

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            +PQIGDKFASRHGQKGTCG+QY QE                                   
Sbjct: 944  VPQIGDKFASRHGQKGTCGMQYSQEDMPFTCQGITPDIIVNPHAIPSRMTIGHLIECLLG 1003

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             V   +G  GDATPF + V V ++++ L+ + +   GNEV++NG TGRK+ AQVF GPTY
Sbjct: 1004 KVGCLEGAFGDATPFIE-VTVNEVASALEAHNFHKYGNEVLYNGFTGRKMQAQVFFGPTY 1062

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIH+RARGP+QIL +QP+EGR+RDGGLRFGEMERDC I+HG+AQFLRERL
Sbjct: 1063 YQRLKHMVDDKIHARARGPLQILTKQPVEGRSRDGGLRFGEMERDCMIAHGSAQFLRERL 1122

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FEVSDPYRIHVC+ CGLI IAN+  N  ECK C N T++SQVR+PYA KLLFQELMSM I
Sbjct: 1123 FEVSDPYRIHVCDICGLICIANLNKNELECKACSNTTRVSQVRIPYACKLLFQELMSMCI 1182

Query: 445  APRLMV 450
            APR+M 
Sbjct: 1183 APRIMT 1188


>gi|392597726|gb|EIW87048.1| DNA-dependent RNA polymerase II second largest subunit [Coniophora
            puteana RWD-64-598 SS2]
          Length = 1228

 Score =  551 bits (1420), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 275/487 (56%), Positives = 333/487 (68%), Gaps = 82/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG+Y+TNF VRMDT+A++LYYP KPL TTR                              
Sbjct: 779  MGIYLTNFLVRMDTMANILYYPQKPLATTR------------------------------ 808

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 809  ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 853

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+++RSY D E K    Q E+FEKP R T   M++  YDK++DDG+IAPG  VSG+D++I
Sbjct: 854  SIYYRSYMDLEKKSGIQQLEEFEKPTRDTTLRMKHGTYDKIEDDGLIAPGTGVSGEDIII 913

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  +P + +EL   T+  ++RD ST L+++E GIVDQV++T N +G KF K+RVRS R
Sbjct: 914  GKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTR 973

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 974  IPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLS 1033

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             V++  G  GDATPF D + V+ +ST L++ GYQ RG EVM++GHTGRK+ AQV+LGPTY
Sbjct: 1034 KVATLIGNEGDATPFTD-LTVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTY 1092

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQIL RQP+EGR+RDGGLRFGEMERDC ISHG A FL+ERL
Sbjct: 1093 YQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGVAAFLKERL 1152

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FE SD YR+HVC+ CGL AIAN++  TFEC+ CKNKT  SQ+ +PYAAKLLFQEL SMNI
Sbjct: 1153 FEASDAYRLHVCDICGLTAIANLKKQTFECRACKNKTACSQLYIPYAAKLLFQELQSMNI 1212

Query: 445  APRLMVV 451
            A RL  V
Sbjct: 1213 AARLYTV 1219


>gi|356558375|ref|XP_003547482.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Glycine
            max]
          Length = 1193

 Score =  551 bits (1420), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 273/486 (56%), Positives = 333/486 (68%), Gaps = 84/486 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG+Y+TN+  RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 743  MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA----------------------------- 773

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                            ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 774  ----------------MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 817

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+FFRSY+D E K     +E F +P+R    GMR+  YDKLDDDG+  PG RVSG+DV+I
Sbjct: 818  SLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 877

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT   P +++E +G   R+++RD S  LR+SETGIVDQV+LT N DG +F K+RVRSVR
Sbjct: 878  GKTT--PISQEEAQGQALRYTRRDHSISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVR 935

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 936  IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMG 995

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGR+++A +FLGPTY
Sbjct: 996  KVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTY 1054

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGGLRFGEMERDC I+HGAA FL+ERL
Sbjct: 1055 YQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERL 1114

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            F+ SD YR+HVC  CGLIAIAN++ N+FEC+GCKNKT I QV +PYA KLLFQELM+M I
Sbjct: 1115 FDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVYIPYACKLLFQELMAMAI 1174

Query: 445  APRLMV 450
            APR++ 
Sbjct: 1175 APRMLT 1180


>gi|409051856|gb|EKM61332.1| hypothetical protein PHACADRAFT_247866 [Phanerochaete carnosa
            HHB-10118-sp]
          Length = 1237

 Score =  550 bits (1417), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 274/487 (56%), Positives = 333/487 (68%), Gaps = 82/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG+Y+TNF VRMDT+A++LYYP KPL TTR                              
Sbjct: 790  MGIYLTNFLVRMDTMANILYYPQKPLATTR------------------------------ 819

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 820  ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 864

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+++RSY D E K    Q E+FEKP R T   M++  YDKL+DDG+IAPG  V+G+D++I
Sbjct: 865  SMYYRSYMDLEKKSGVQQLEEFEKPTRDTTLRMKHGTYDKLEDDGLIAPGTGVNGEDIII 924

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  +P + +EL   T+  +KRD ST L+++E+GI+DQV++T N +G KF KIRVRS R
Sbjct: 925  GKTAPIPPDSEELGQRTRTHTKRDVSTPLKSTESGIIDQVLITTNAEGQKFVKIRVRSTR 984

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 985  IPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIVINPHAIPSRMTIGHLVECLLS 1044

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             V++  G  GDATPF D + V+ +S +L+E GYQ RG E+M++GHTGRK+ AQV+ GPTY
Sbjct: 1045 KVATIVGNEGDATPFTD-LTVESVSQILREQGYQSRGLEIMYHGHTGRKLQAQVYFGPTY 1103

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQIL RQP+EGR+RDGGLRFGEMERDC ISHG A FL+ERL
Sbjct: 1104 YQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGVAAFLKERL 1163

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FE SD YR+HVC+ CGL AIAN++  TFEC+ CKNKT  SQ+ +PYAAKLLFQEL SMNI
Sbjct: 1164 FEASDAYRLHVCDICGLTAIANLKKQTFECRSCKNKTACSQLYIPYAAKLLFQELQSMNI 1223

Query: 445  APRLMVV 451
            A RL  V
Sbjct: 1224 AARLYTV 1230


>gi|356530409|ref|XP_003533774.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Glycine
            max]
          Length = 1192

 Score =  550 bits (1416), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 272/486 (55%), Positives = 333/486 (68%), Gaps = 84/486 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG+Y+TN+  RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 743  MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA----------------------------- 773

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                            ME+L FR+LPAGIN+IV+I CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 774  ----------------MEHLHFRQLPAGINAIVSIACYSGYNQEDSVIMNQSSIDRGFFR 817

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+FFRSY+D E K     +E F +P+R    GMR+  YDKLDDDG+  PG RVSG+DV+I
Sbjct: 818  SLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 877

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT   P +++E +G   R+++RD S  LR+SETGIVDQV+LT N DG +F K+RVRSVR
Sbjct: 878  GKTT--PISQEEAQGQALRYTRRDHSISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVR 935

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 936  IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMG 995

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGR+++A +FLGPTY
Sbjct: 996  KVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTY 1054

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGGLRFGEMERDC I+HGAA FL+ERL
Sbjct: 1055 YQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERL 1114

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            F+ SD YR+HVC  CGLIAIAN++ N+FEC+GCKNKT I QV +PYA KLLFQELM+M I
Sbjct: 1115 FDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVYIPYACKLLFQELMAMAI 1174

Query: 445  APRLMV 450
            APR++ 
Sbjct: 1175 APRMLT 1180


>gi|68300810|gb|AAY89346.1| RNA polymerase II second largest subunit [Nicotiana sylvestris]
          Length = 1087

 Score =  550 bits (1416), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 270/486 (55%), Positives = 335/486 (68%), Gaps = 84/486 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG+Y+TN+  RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 643  MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA----------------------------- 673

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                            ME+L FR+LPAGIN+IVAI CY+GY+QEDSVI+N S+++RG+FR
Sbjct: 674  ----------------MEHLHFRQLPAGINAIVAISCYSGYSQEDSVIMNQSSIDRGFFR 717

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+FFRSY+D E K     +E F +P+R +  GMR+  YDKLDDDG+  PG RVSG+DV+I
Sbjct: 718  SLFFRSYRDEEKKMGTLVKEDFGRPDRASTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 777

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT   P ++D+ +G   R++++D ST LR+SETG+VDQV+LT N DG +F K+RVRSVR
Sbjct: 778  GKTT--PISQDDAQGQASRYTRKDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVR 835

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 836  IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMG 895

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGR+++A +FLGPTY
Sbjct: 896  KVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTY 954

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGGLRFGEMERDC I+HGAA FL+ERL
Sbjct: 955  YQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERL 1014

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            F+ SD YR+HVC  CGLIAIAN++ ++FEC+GCKNKT I QV +PYA KLLFQELM+M I
Sbjct: 1015 FDQSDAYRVHVCERCGLIAIANLKKSSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAI 1074

Query: 445  APRLMV 450
            APR++ 
Sbjct: 1075 APRMLT 1080


>gi|16488|emb|CAA79527.1| RNA polymerase II second largest subunit [Arabidopsis thaliana]
          Length = 1188

 Score =  549 bits (1414), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 273/486 (56%), Positives = 332/486 (68%), Gaps = 84/486 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG+Y+TN+  RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 741  MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA----------------------------- 771

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                            ME+L FR+LPAGIN+ VAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 772  ----------------MEHLHFRQLPAGINANVAISCYSGYNQEDSVIMNQSSIDRGFFR 815

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+FFRSY+D E K     +E F +P+R +  GMR+  YDKLDDDG+  PG RVSG+DV+I
Sbjct: 816  SLFFRSYRDEEKKMGTLVKEDFGRPDRGSTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 875

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT   P ++DE +G + R+++RD S  LR+SETG+VDQV+LT N DG +F K+RVRSVR
Sbjct: 876  GKTT--PISQDEAQGQSSRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVR 933

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 934  IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGVTPDIIVNPHAIPSRMTIGQLIECIMG 993

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGR + A +FLGPTY
Sbjct: 994  KVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFERMYNGHTGRPLTAMIFLGPTY 1052

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGGLRFGEMERDC I+HGAA FL+ERL
Sbjct: 1053 YQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERL 1112

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            F+ SD YR+HVC  CGLIAIAN++ N+FEC+GCKNKT I QV +PYA KLLFQELMSM I
Sbjct: 1113 FDQSDAYRVHVCEVCGLIAIANLKKNSFECRGCKNKTDIVQVYIPYACKLLFQELMSMAI 1172

Query: 445  APRLMV 450
            APR++ 
Sbjct: 1173 APRMLT 1178


>gi|336376994|gb|EGO05329.1| hypothetical protein SERLA73DRAFT_101102 [Serpula lacrymans var.
            lacrymans S7.3]
 gi|336390144|gb|EGO31287.1| DNA-directed RNA polymerase II, subunit 2 [Serpula lacrymans var.
            lacrymans S7.9]
          Length = 1209

 Score =  549 bits (1414), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 275/487 (56%), Positives = 332/487 (68%), Gaps = 82/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG+Y+TNF VRMDT+A++LYYP KPL TTR                              
Sbjct: 760  MGIYLTNFLVRMDTMANILYYPQKPLATTR------------------------------ 789

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 790  ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 834

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+++RSY D E K    Q E+FEKP R     M++  YDKL+DDG+IAPG  VSG+D++I
Sbjct: 835  SIYYRSYMDLEKKSGVQQLEEFEKPTRDNTLRMKHGTYDKLEDDGLIAPGTGVSGEDIII 894

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  +P + +EL   T+  ++RD ST L+++E GIVDQV++T N +G KF KIRVRS R
Sbjct: 895  GKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVDQVLITTNSEGQKFVKIRVRSTR 954

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 955  IPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDIVINPHAIPSRMTIGHLVECLLS 1014

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             V++  G  GDATPF D + V+ +ST L++ GYQ RG EVM++GHTGRK+ AQV+LGPTY
Sbjct: 1015 KVATLIGNEGDATPFTD-LTVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTY 1073

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQIL RQP+EGR+RDGGLRFGEMERDC ISHG A FL+ERL
Sbjct: 1074 YQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGVAGFLKERL 1133

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FE SD YR+HVC+ CGL AIAN++  +FEC+ CKNKT  SQ+ +PYAAKLLFQEL SMNI
Sbjct: 1134 FEASDAYRLHVCDICGLTAIANLKKQSFECRACKNKTACSQLYIPYAAKLLFQELQSMNI 1193

Query: 445  APRLMVV 451
            A RL  V
Sbjct: 1194 AARLYTV 1200


>gi|449433841|ref|XP_004134705.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Cucumis
            sativus]
 gi|449479313|ref|XP_004155566.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Cucumis
            sativus]
          Length = 1199

 Score =  549 bits (1414), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 273/486 (56%), Positives = 331/486 (68%), Gaps = 84/486 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG+Y+TN+  RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 748  MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA----------------------------- 778

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                            ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 779  ----------------MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 822

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+FFRSY+D E K     +E F +P+R    GMR+  YDKLDDDG+  PG RVSG+DV+I
Sbjct: 823  SLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 882

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT   P +++E +G   R+S+RD S  LR+SE GIVDQV+LT N DG +F K+RVRSVR
Sbjct: 883  GKTT--PISQEEAQGQAARYSRRDHSISLRHSENGIVDQVLLTTNADGLRFVKVRVRSVR 940

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 941  IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMG 1000

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGR+++A +FLGPTY
Sbjct: 1001 KVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTY 1059

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGGLRFGEMERDC I+HGAA FL+ERL
Sbjct: 1060 YQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERL 1119

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            F+ SD YRIHVC  CGLIAIAN++ ++FEC+GCKNKT I QV +PYA KLLFQELM+M I
Sbjct: 1120 FDQSDAYRIHVCECCGLIAIANLKKSSFECRGCKNKTDIVQVYIPYACKLLFQELMAMAI 1179

Query: 445  APRLMV 450
            APR+  
Sbjct: 1180 APRMFT 1185


>gi|167519879|ref|XP_001744279.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163777365|gb|EDQ90982.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1166

 Score =  548 bits (1413), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 276/486 (56%), Positives = 329/486 (67%), Gaps = 85/486 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYP +PLV TR                              
Sbjct: 725  MGVYITNFHVRMDTLAHVLYYPQRPLVQTR------------------------------ 754

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SM YLRF ELPAGIN+IV I+ YTGYNQEDSVI+N  +VERG FR
Sbjct: 755  ---------------SMNYLRFAELPAGINAIVGIMTYTGYNQEDSVIMNRYSVERGLFR 799

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSY  +E    G+   + +KP+R+ C GMR A YDKL+DDGI+APG+RVSGDD ++
Sbjct: 800  SVFYRSYAASEHSERGEII-KIDKPSRENCIGMRRANYDKLEDDGIVAPGIRVSGDDAIV 858

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            G+ + LPE   +  G   RF KRD S FLR+SE+GI+D VM+++N  G KF KIRVRSVR
Sbjct: 859  GRLLELPEATRQASG--GRFEKRDKSLFLRSSESGIIDGVMISVNQKGEKFVKIRVRSVR 916

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
             PQIGDKFASRHGQKGTCG+QY QE                                   
Sbjct: 917  TPQIGDKFASRHGQKGTCGMQYAQEDMPFAASGVVPDIIVNPHAIPSRMTIGHLIECLLG 976

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
              +S+ G IGDATPF   VNV  ++ +L+ Y +Q  GNEVM+NG TGRK+ AQVFLGPTY
Sbjct: 977  KSASHSGTIGDATPFT-KVNVTDVADILEGYNFQRYGNEVMYNGFTGRKMQAQVFLGPTY 1035

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIH+RARGP+Q L RQPMEGR+RDGGLRFGEMERDC I+HGAAQFLRERL
Sbjct: 1036 YQRLKHMVDDKIHARARGPLQNLTRQPMEGRSRDGGLRFGEMERDCMIAHGAAQFLRERL 1095

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FEVSDPY +HVC+ CGL  +A +  N FEC  C+N T++S++RLPYA KLLFQELM+M++
Sbjct: 1096 FEVSDPYSLHVCDVCGLPCVAKLEKNEFECTRCRNSTRVSRIRLPYACKLLFQELMTMSV 1155

Query: 445  APRLMV 450
             PR+M 
Sbjct: 1156 VPRMMT 1161


>gi|395334467|gb|EJF66843.1| DNA-dependent RNA polymerase II second largest subunit [Dichomitus
            squalens LYAD-421 SS1]
          Length = 1222

 Score =  548 bits (1413), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 273/484 (56%), Positives = 331/484 (68%), Gaps = 82/484 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG+++TNF +RMDT+A++LYYP KPL TTR                              
Sbjct: 775  MGIFLTNFLIRMDTMANILYYPQKPLATTR------------------------------ 804

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 805  ---------------SMEYLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 849

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+++RSY D E K    Q E+FEKP R T   M++  YDKL+DDG+IAPG  V+G+D++I
Sbjct: 850  SIYYRSYMDLEKKSGVQQLEEFEKPTRDTTLRMKHGTYDKLEDDGLIAPGTNVNGEDIII 909

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  +P + +EL   T+  +KRD ST L+++E GIVDQV++T N +G KF KIRVRS R
Sbjct: 910  GKTAPIPPDSEELGQRTRTHTKRDVSTPLKSTEQGIVDQVLITTNAEGQKFVKIRVRSTR 969

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 970  IPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLS 1029

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             +++  G  GDATPF D + V+ +S  L++ GYQ RG EVM++GHTGRK+ AQV+LGPTY
Sbjct: 1030 KLATLIGNEGDATPFTD-LTVESVSQYLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTY 1088

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQIL RQP+EGR+RDGGLRFGEMERDC ISHG A FL+ERL
Sbjct: 1089 YQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGVAAFLKERL 1148

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FE SD YR+HVC+ CGL AIAN++  TFEC+ CKNKT  SQ+ +PYAAKLLFQEL SMNI
Sbjct: 1149 FEASDAYRLHVCDICGLTAIANLKKQTFECRACKNKTACSQIYIPYAAKLLFQELQSMNI 1208

Query: 445  APRL 448
            A RL
Sbjct: 1209 AARL 1212


>gi|403417741|emb|CCM04441.1| predicted protein [Fibroporia radiculosa]
          Length = 1226

 Score =  548 bits (1411), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 273/487 (56%), Positives = 333/487 (68%), Gaps = 82/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG+Y+TNF VRMDT+A++LYYP KPL TTR                              
Sbjct: 779  MGIYLTNFLVRMDTMANILYYPQKPLATTR------------------------------ 808

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 809  ---------------SMEYLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 853

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+++RSY D E K    Q E+FEKP R+    M++  YDKL+DDG+IAPG  V+G+D++I
Sbjct: 854  SMYYRSYMDLEKKSGVQQLEEFEKPTRENTLRMKHGTYDKLEDDGLIAPGTGVNGEDIII 913

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  +P + +EL   T+  ++RD ST L+++E+GI+DQV++T N +G KF KIRVRS R
Sbjct: 914  GKTAPIPPDSEELGQRTRAHTRRDVSTPLKSTESGIIDQVLITTNAEGQKFVKIRVRSTR 973

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 974  IPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDLIINPHAIPSRMTIGHLVECLLS 1033

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             V++  G  GDATPF D + V+ +S  L++ GYQ RG E+M++GHTGRK+ AQV+LGPTY
Sbjct: 1034 KVATLIGNEGDATPFTD-LTVESVSQFLRQKGYQSRGLEIMYHGHTGRKLQAQVYLGPTY 1092

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQIL RQP+EGR+RDGGLRFGEMERDC ISHG A FL+ERL
Sbjct: 1093 YQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGVAAFLKERL 1152

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FE SD YR+HVC+ CGL AIAN++  TFEC+ CKNKT  SQ+ +PYAAKLLFQEL SMNI
Sbjct: 1153 FEASDAYRLHVCDICGLTAIANLKKQTFECRSCKNKTACSQLYIPYAAKLLFQELQSMNI 1212

Query: 445  APRLMVV 451
            A RL  V
Sbjct: 1213 AARLYTV 1219


>gi|403161549|ref|XP_003321874.2| DNA-directed RNA polymerase II subunit RPB2 [Puccinia graminis f. sp.
            tritici CRL 75-36-700-3]
 gi|375171826|gb|EFP77455.2| DNA-directed RNA polymerase II subunit RPB2 [Puccinia graminis f. sp.
            tritici CRL 75-36-700-3]
          Length = 1131

 Score =  548 bits (1411), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 271/485 (55%), Positives = 332/485 (68%), Gaps = 82/485 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVY+TNF  RMDT+A++LYYP KPL TTR                              
Sbjct: 678  MGVYLTNFRTRMDTMANILYYPQKPLATTR------------------------------ 707

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 708  ---------------SMEYLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 752

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S ++RSY D E +    Q E+FEKP R +   +++  YDKLDDDGII PG RVSGDD++I
Sbjct: 753  SFYYRSYMDQEKRAGALQMEEFEKPTRDSTLRLKHGTYDKLDDDGIITPGTRVSGDDIII 812

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  +P++ +EL    K  +KRD S  L+++E GI+DQV++T N DG KF K+R+RS R
Sbjct: 813  GKTAPIPKDSEELGQRMKTHTKRDVSMPLKSTENGIIDQVLVTTNQDGLKFVKVRIRSTR 872

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IP+ GDKFASRHGQKGT GI YRQE                                   
Sbjct: 873  IPETGDKFASRHGQKGTVGILYRQEDMPFTSEGVCPDIIINPHAIPSRMTIGHLVECLLS 932

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+  G  GDATPF++ V V+ IS LL++ GYQ RG E+MFNGHTG+K+ AQ +LGPTY
Sbjct: 933  KVSTITGNEGDATPFSE-VTVEAISALLKDKGYQSRGLEIMFNGHTGKKLRAQCYLGPTY 991

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMV+DKIHSRARGPVQIL RQP+EGR+RDGGLRFGEMERDC ISHG A FL+ER+
Sbjct: 992  YQRLKHMVNDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGIAGFLKERM 1051

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            F+VSD YR+HVC+FCG++AIAN++  +FEC+ C+NKT ISQV +PYAAKLLFQEL SMNI
Sbjct: 1052 FDVSDAYRVHVCDFCGMVAIANLKKQSFECRSCRNKTAISQVYIPYAAKLLFQELQSMNI 1111

Query: 445  APRLM 449
            A R +
Sbjct: 1112 ASRFV 1116


>gi|344323318|gb|AEN14442.1| DNA-dependent RNA polymerase II second largest subunit [Lentinula
            edodes]
          Length = 1228

 Score =  548 bits (1411), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 273/487 (56%), Positives = 331/487 (67%), Gaps = 82/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG+Y+TNF +RMDT+A++LYYP KPL TTR                              
Sbjct: 781  MGIYLTNFLIRMDTMANILYYPQKPLATTR------------------------------ 810

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 811  ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 855

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+++RSY D E K    Q E+FEKP R     M++  YDKL+DDG+IAPG  V G+D++I
Sbjct: 856  SIYYRSYMDLEKKSGVQQLEEFEKPTRDNTLRMKHGTYDKLEDDGLIAPGTGVRGEDIII 915

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  +P + +EL   T+  ++RD ST L+++E+GIVDQV++T N +G KF KIRVRS R
Sbjct: 916  GKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTESGIVDQVLITTNSEGQKFVKIRVRSTR 975

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 976  IPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDIVINPHAIPSRMTIGHLVECLLS 1035

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             V++  G  GDATPF D + V+ +S  L++ GYQ RG EVMF+GHTGRK+ AQV+LGPTY
Sbjct: 1036 KVATLIGNEGDATPFTD-LTVESVSMFLKQKGYQSRGLEVMFHGHTGRKLQAQVYLGPTY 1094

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQIL RQP+EGR+RDGGLRFGEMERDC ISHG A FL+ERL
Sbjct: 1095 YQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGIAGFLKERL 1154

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FE SD YR+HVC  CGL AIAN++  +FEC+ CKNKT +SQ+ +PYAAKLLFQEL SMNI
Sbjct: 1155 FEASDAYRVHVCEICGLTAIANLKKQSFECRACKNKTAVSQLYIPYAAKLLFQELQSMNI 1214

Query: 445  APRLMVV 451
            A RL  V
Sbjct: 1215 AARLYTV 1221


>gi|449550934|gb|EMD41898.1| hypothetical protein CERSUDRAFT_110450 [Ceriporiopsis subvermispora
            B]
          Length = 1242

 Score =  547 bits (1410), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 271/484 (55%), Positives = 333/484 (68%), Gaps = 82/484 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG+Y+TNF VRMDT+A++LYYP KPL TTR                              
Sbjct: 795  MGIYLTNFLVRMDTMANILYYPQKPLATTR------------------------------ 824

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAG N++VAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 825  ---------------SMEYLRFRELPAGQNAVVAILCYSGYNQEDSVIMNQSSIDRGLFR 869

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+++RSY D E K    Q E+FEKP+R+    M++  YDKL+DDG+IAPG  V+G+D++I
Sbjct: 870  SIYYRSYMDLEKKSGVQQLEEFEKPSRENTLRMKHGTYDKLEDDGLIAPGTGVNGEDIII 929

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  +P + +EL   T+  ++RD ST L+++E+GI+DQV++T N +G KF KIRVRS R
Sbjct: 930  GKTAPIPPDSEELGQRTRAHTRRDVSTPLKSTESGIIDQVLITTNAEGQKFVKIRVRSTR 989

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQ GDKFASRHGQKGT GI YRQE                                   
Sbjct: 990  IPQTGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIVINPHAIPSRMTIGHLVECLLS 1049

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             V++  G  GDATPF D + V+ +S +L++ GYQ RG EVM++GHTGRK+ AQV+LGPTY
Sbjct: 1050 KVATLIGNEGDATPFTD-LTVESVSQVLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTY 1108

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQIL RQP+EGR+RDGGLRFGEMERDC ISHG A FL+ERL
Sbjct: 1109 YQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGVAAFLKERL 1168

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FE SD YR+HVC+ CGL AIAN++   FEC+ CKNKT ISQ+ +PYAAKLLFQEL SMNI
Sbjct: 1169 FEASDAYRLHVCDICGLTAIANLKKQMFECRSCKNKTAISQLYIPYAAKLLFQELQSMNI 1228

Query: 445  APRL 448
            A RL
Sbjct: 1229 AARL 1232


>gi|409083783|gb|EKM84140.1| hypothetical protein AGABI1DRAFT_117576 [Agaricus bisporus var.
            burnettii JB137-S8]
          Length = 1220

 Score =  547 bits (1409), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 272/487 (55%), Positives = 332/487 (68%), Gaps = 82/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG+Y+TNF +RMDT+A++LYYP KPL TTR                              
Sbjct: 773  MGIYLTNFLIRMDTMANILYYPQKPLATTR------------------------------ 802

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 803  ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 847

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+++RSY D E K    Q E+FEKP R T   M++  YDKL+DDG+IAPG  V G+D++I
Sbjct: 848  SIYYRSYMDLEKKSGIQQLEEFEKPTRDTTLRMKHGTYDKLEDDGLIAPGTGVRGEDIII 907

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  +P + +EL   T+  ++RD ST L+++E GIVDQV++T N +G KF K+RVR+ R
Sbjct: 908  GKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTEIGIVDQVLITTNSEGQKFVKVRVRATR 967

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 968  IPQIGDKFASRHGQKGTVGITYRQEDMPFTAEGIVPDLIINPHAIPSRMTIGHLVECLLS 1027

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             V++  G  GDATPF D + V+ +ST L++ GYQ RG EVM++GHTGRK+ AQ++LGPTY
Sbjct: 1028 KVATLIGNEGDATPFTD-LTVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQAQIYLGPTY 1086

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQIL RQP+EGR+RDGGLRFGEMERDC ISHG A FL+ERL
Sbjct: 1087 YQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGIAGFLKERL 1146

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FE SD YR+HVC+ CGL AIAN++  TFEC+ CKNKT  SQ+ +PYAAKLLFQEL SMNI
Sbjct: 1147 FEASDAYRLHVCDICGLTAIANLKKQTFECRSCKNKTACSQIYIPYAAKLLFQELQSMNI 1206

Query: 445  APRLMVV 451
            A RL  V
Sbjct: 1207 AARLYTV 1213


>gi|255073731|ref|XP_002500540.1| predicted protein [Micromonas sp. RCC299]
 gi|226515803|gb|ACO61798.1| predicted protein [Micromonas sp. RCC299]
          Length = 1178

 Score =  547 bits (1409), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 274/489 (56%), Positives = 333/489 (68%), Gaps = 89/489 (18%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG+Y+TNF +RMDTLA+VL+YP KPLVTTR+                             
Sbjct: 740  MGMYVTNFQIRMDTLAYVLFYPQKPLVTTRA----------------------------- 770

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                            ME+L FRELPAG+N +V I+CYTGYNQEDSVI+N S+++RG FR
Sbjct: 771  ----------------MEHLHFRELPAGVNVVVGIMCYTGYNQEDSVIMNQSSIDRGLFR 814

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+F+RS+KD E K+    +E+ E+P+R T  GMR+  YDKLDDDG+I PG RVSG+D++I
Sbjct: 815  SIFYRSFKDEEKKQGSLTKEELERPSRDTTLGMRHGTYDKLDDDGLICPGTRVSGEDIII 874

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  LPE  D+    +KRF+KRD ST ++NSETGI+DQV+LT N  G +F KIRVRS R
Sbjct: 875  GKTSPLPE--DDPSAVSKRFTKRDCSTGMKNSETGIIDQVLLTTNDQGLRFVKIRVRSCR 932

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
             PQ+GDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 933  TPQVGDKFSSRHGQKGTIGMTYTQEDMPFTCEGIVPDIIVNPHAIPSRMTIGQLVECLMG 992

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             V++  G+ GDATPF   V V+ IS +L   GYQ RGNEVM+NGHTGRK+ A++FLGPTY
Sbjct: 993  KVAAMMGKEGDATPFT-PVTVESISDMLHMCGYQKRGNEVMYNGHTGRKLEAKIFLGPTY 1051

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSR RGPVQIL RQPMEGR+RDGGLRFGEMERDC ISHGAA FL+ERL
Sbjct: 1052 YQRLKHMVDDKIHSRGRGPVQILTRQPMEGRSRDGGLRFGEMERDCIISHGAAAFLKERL 1111

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKN---KTQISQVRLPYAAKLLFQELMS 441
             + SD YRIHVC  CGLIA+AN++N TFEC  CKN   +T++ QV +PYA KLLFQELMS
Sbjct: 1112 MDQSDAYRIHVCETCGLIAVANLKNQTFEC--CKNPSERTKVVQVMMPYACKLLFQELMS 1169

Query: 442  MNIAPRLMV 450
            M +APRL+ 
Sbjct: 1170 MAVAPRLVT 1178


>gi|392571043|gb|EIW64215.1| DNA-dependent RNA polymerase II second largest subunit [Trametes
            versicolor FP-101664 SS1]
          Length = 1231

 Score =  546 bits (1408), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 271/484 (55%), Positives = 331/484 (68%), Gaps = 82/484 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG+Y+TNF VRMDT+A++LYYP KPL TTR                              
Sbjct: 784  MGIYLTNFLVRMDTMANILYYPQKPLATTR------------------------------ 813

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYL+FRELPAG N++VAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 814  ---------------SMEYLKFRELPAGQNAVVAILCYSGYNQEDSVIMNQSSIDRGLFR 858

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+++RSY D E K    Q E+FEKP R +   M++  YDKL+DDG+IAPG  V+G+D++I
Sbjct: 859  SMYYRSYMDLEKKSGIQQLEEFEKPTRDSTLRMKHGTYDKLEDDGLIAPGTNVNGEDIII 918

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  +P + +EL   T+  +KRD ST L+++E GI+DQV++T N +G KF KIRVRS R
Sbjct: 919  GKTAPIPPDSEELGQRTRTHTKRDVSTPLKSTEQGIIDQVLITTNAEGQKFVKIRVRSTR 978

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 979  IPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLS 1038

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             V++  G  GDATPF D + V+ +S  L++ GYQ RG E+M++GHTGRKI AQV+LGPTY
Sbjct: 1039 KVATLIGNEGDATPFTD-LTVESVSQFLRQKGYQSRGLEIMYHGHTGRKIQAQVYLGPTY 1097

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQIL RQP+EGR+RDGGLRFGEMERDC ISHG A FL+ERL
Sbjct: 1098 YQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGVAAFLKERL 1157

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FE SD YR+HVC+ CGL AIAN++  TFEC+ C+NKT  SQ+ +PYAAKLLFQEL SMNI
Sbjct: 1158 FEASDAYRLHVCDICGLTAIANLKKQTFECRACRNKTACSQIYIPYAAKLLFQELQSMNI 1217

Query: 445  APRL 448
            A RL
Sbjct: 1218 AARL 1221


>gi|328859896|gb|EGG09004.1| hypothetical protein MELLADRAFT_47615 [Melampsora larici-populina
            98AG31]
          Length = 1257

 Score =  546 bits (1406), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 270/485 (55%), Positives = 333/485 (68%), Gaps = 82/485 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVY+TNF +RMDT+A++LYYP KPL TTR                              
Sbjct: 804  MGVYLTNFRMRMDTMANILYYPQKPLATTR------------------------------ 833

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 834  ---------------SMEYLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 878

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S ++RSY D E K    Q E+FEKP+R+    +++  Y+KLDDDGII PG RVSGDD++I
Sbjct: 879  SFYYRSYMDQEKKAGALQMEEFEKPSRENTLRLKHGTYEKLDDDGIITPGTRVSGDDIII 938

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  +P + +EL    K  +KRD S  L+++E GI+DQV++T N DG KF K+R+RS R
Sbjct: 939  GKTAPIPPDSEELGQRMKTHTKRDVSMPLKSTENGIIDQVLITTNQDGLKFVKVRIRSTR 998

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IP+ GDKFASRHGQKGT GI YRQE                                   
Sbjct: 999  IPETGDKFASRHGQKGTVGILYRQEDMPFTSEGICPDIIINPHAIPSRMTIGHLVECLLS 1058

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+  G  GDATPF++ V V+ IS+LL++ GYQ RG E+M+NGHTGRK+ AQ +LGPTY
Sbjct: 1059 KVSTITGNEGDATPFSE-VTVEAISSLLKDNGYQSRGLEIMYNGHTGRKLRAQCYLGPTY 1117

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMV+DKIHSRARGPVQIL RQP+EGR+RDGGLRFGEMERDC ISHG A FL+ER+
Sbjct: 1118 YQRLKHMVNDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGIAGFLKERM 1177

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            F+VSD YR+HVC+ CG++AIAN++  +FEC+ C+NKT ISQV +PYAAKLLFQEL SMNI
Sbjct: 1178 FDVSDAYRVHVCDICGMVAIANLKKQSFECRACRNKTAISQVYIPYAAKLLFQELQSMNI 1237

Query: 445  APRLM 449
            A R +
Sbjct: 1238 ASRFV 1242


>gi|70906409|gb|AAZ14928.1| DNA-dependent RNA polymerase II second largest subunit [Coprinellus
            disseminatus]
          Length = 1241

 Score =  545 bits (1405), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 272/487 (55%), Positives = 331/487 (67%), Gaps = 82/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG+Y+TNF VRMDT+A++LYYP KPL TTR                              
Sbjct: 794  MGIYLTNFLVRMDTMANILYYPQKPLATTR------------------------------ 823

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 824  ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 868

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+++RSY D E K    Q E+FEKP R T   M++  YDK++DDG IAPG  V+G+D++I
Sbjct: 869  SMYYRSYMDLEKKSGALQLEEFEKPTRDTTLRMKHGTYDKIEDDGFIAPGTNVTGEDIII 928

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  +P + +EL   T+  ++RD ST L+++E GIVDQV++T N +G KF K+RVRS R
Sbjct: 929  GKTAPIPPDSEELGQRTRAHTRRDVSTPLKSTENGIVDQVLITTNAEGQKFVKVRVRSTR 988

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 989  IPQIGDKFASRHGQKGTIGITYRQEDMPFTCEGIVPDLIINPHAIPSRMTIGHLVECLLS 1048

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             V++  G  GDATPF D + V+ +S  L++ GYQ RG EVM++GHTGRK+ AQV+LGPTY
Sbjct: 1049 KVATLIGNEGDATPFTD-LTVEAVSNFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTY 1107

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQIL RQP+EGR+RDGGLRFGEMERDC ISHG A FL+ERL
Sbjct: 1108 YQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGIAGFLKERL 1167

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FE SD YR+HVC+ CGL AIAN++  +FEC+ CKNKT  SQ+ +PYAAKLLFQEL SMNI
Sbjct: 1168 FEASDAYRLHVCDICGLTAIANLKKQSFECRACKNKTACSQLYIPYAAKLLFQELQSMNI 1227

Query: 445  APRLMVV 451
            A RL  V
Sbjct: 1228 AARLYTV 1234


>gi|169844839|ref|XP_001829140.1| DNA-dependent RNA polymerase II second largest subunit [Coprinopsis
            cinerea okayama7#130]
 gi|116509880|gb|EAU92775.1| DNA-dependent RNA polymerase II second largest subunit [Coprinopsis
            cinerea okayama7#130]
          Length = 1222

 Score =  545 bits (1404), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 271/487 (55%), Positives = 334/487 (68%), Gaps = 82/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG+++TNF +RMDT+A++LYYP KPL TTR                              
Sbjct: 775  MGIFLTNFLIRMDTMANILYYPQKPLATTR------------------------------ 804

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYL+FRELPAG NSIVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 805  ---------------SMEYLKFRELPAGQNSIVAILCYSGYNQEDSVIVNQSSIDRGLFR 849

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+++RSY D E K    Q E+FEKP R+T   M++  YDK++DDG+IAPG  V+G+D++I
Sbjct: 850  SIYYRSYMDLEKKSGIQQLEEFEKPTRETTLRMKHGTYDKIEDDGLIAPGTNVTGEDIII 909

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  +P + +EL   T+  ++RD ST L+++E GIVDQV++T N +G KF K+RVRS R
Sbjct: 910  GKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTR 969

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 970  IPQIGDKFASRHGQKGTIGIAYRQEDMPFTAEGIVPDLIINPHAIPSRMTIGHLVECLLS 1029

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             V++  G  GDATPF D + V+ +ST L++ GYQ RG EVM++GHTGRK+ AQV+LGPTY
Sbjct: 1030 KVATLIGNEGDATPFTD-LTVEGVSTFLRQRGYQSRGLEVMYHGHTGRKLQAQVYLGPTY 1088

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQIL RQP+EGR+RDGGLRFGEMERDC ISHG A FL+ERL
Sbjct: 1089 YQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGIAGFLKERL 1148

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            F+ SD YR+HVC+ CGL AIAN++  +FEC+ CKNKT  SQ+ +PYAAKLLFQEL SMNI
Sbjct: 1149 FDASDAYRLHVCDICGLTAIANLKKQSFECRACKNKTACSQLYIPYAAKLLFQELQSMNI 1208

Query: 445  APRLMVV 451
            A RL  V
Sbjct: 1209 AARLYTV 1215


>gi|68300804|gb|AAY89344.1| RNA polymerase II second largest subunit [Petunia x hybrida]
          Length = 1203

 Score =  545 bits (1404), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 273/486 (56%), Positives = 330/486 (67%), Gaps = 84/486 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG+Y+TN+  RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 754  MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA----------------------------- 784

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                            ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 785  ----------------MEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFR 828

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+FFRSY+D E K     +E F +P+R+   GMR+  YDKLDDDG   PG RVSGDDV+I
Sbjct: 829  SLFFRSYRDEEKKMGTLVKEDFGRPDRENTMGMRHGSYDKLDDDGFAPPGTRVSGDDVII 888

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT   P ++D+ +G + R++++D ST LR+SETGIVDQV+LT N DG +F KIR+RSVR
Sbjct: 889  GKTT--PISQDDAQGQSARYTRKDHSTSLRHSETGIVDQVLLTTNADGLRFVKIRMRSVR 946

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 947  IPQIGDKFSSRHGQKGTIGMTYTQEDMPWTMEGITPDIIVNPHAIPSRMTIGQLVECVMG 1006

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGR + A +FLGPTY
Sbjct: 1007 KVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFERMYNGHTGRILTAMIFLGPTY 1065

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGGLRFGEMERDC I+HGAA FL+ERL
Sbjct: 1066 YQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERL 1125

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            F+ SD YRIHVC  CGLIAIAN++  +FEC+ CKNKT I QV +PYA KLL QELMSM I
Sbjct: 1126 FDQSDAYRIHVCQQCGLIAIANLKKISFECRSCKNKTDIVQVYIPYACKLLIQELMSMAI 1185

Query: 445  APRLMV 450
            APR++ 
Sbjct: 1186 APRMLT 1191


>gi|213408763|ref|XP_002175152.1| DNA-directed RNA polymerase II complex subunit Rpb2
            [Schizosaccharomyces japonicus yFS275]
 gi|212003199|gb|EEB08859.1| DNA-directed RNA polymerase II complex subunit Rpb2
            [Schizosaccharomyces japonicus yFS275]
          Length = 1210

 Score =  545 bits (1403), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 269/484 (55%), Positives = 334/484 (69%), Gaps = 82/484 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG+Y+TN+ VRMDT+A++LYYP KPL TTR                              
Sbjct: 767  MGIYLTNYQVRMDTMANILYYPQKPLATTR------------------------------ 796

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYL+FRELPAG N+IVAILCY+GYNQEDS+I+N S+++RG FR
Sbjct: 797  ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSIIMNQSSIDRGLFR 841

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+F+R+Y D E K      E+FE+P R T   M++  YDKL+DDG+IAPG RVSGDD++I
Sbjct: 842  SIFYRTYMDQEKKIGMTVMEEFERPTRSTTLRMKHGTYDKLEDDGLIAPGTRVSGDDIII 901

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  +P + +EL   T+  +KRD ST LR++E+GIVDQVM+T N +G KF K+R+RS R
Sbjct: 902  GKTAPVPPDHEELGQRTQLHAKRDVSTPLRSTESGIVDQVMVTTNQEGLKFVKVRMRSTR 961

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGT G+ YR E                                   
Sbjct: 962  IPQIGDKFASRHGQKGTIGMTYRHEDMPFSAQGIVPDIIINPHAIPSRMTVAHLVECQLS 1021

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+  G  GDATPF + V V+ +S LL+ +G+  RG EVM++GHTGRK+ AQVFLGPTY
Sbjct: 1022 KVSALSGLEGDATPFTE-VTVEAVSKLLRSHGFHSRGFEVMYHGHTGRKLVAQVFLGPTY 1080

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKH+VDDKIH+RARGPVQIL RQP+EGR+RDGGLRFGEMERDCQISHG +  LRERL
Sbjct: 1081 YQRLKHLVDDKIHARARGPVQILTRQPVEGRSRDGGLRFGEMERDCQISHGCSSVLRERL 1140

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            F+ SD YR+ VC+ CGLIAIA+ + N++EC+ C+N+T+ SQ+ LPYAAKLLFQELMSMNI
Sbjct: 1141 FDCSDAYRVIVCDLCGLIAIASFKKNSYECRSCQNRTRFSQIYLPYAAKLLFQELMSMNI 1200

Query: 445  APRL 448
            APRL
Sbjct: 1201 APRL 1204


>gi|390604597|gb|EIN13988.1| DNA-dependent RNA polymerase II second largest subunit [Punctularia
            strigosozonata HHB-11173 SS5]
          Length = 1247

 Score =  544 bits (1402), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 270/484 (55%), Positives = 331/484 (68%), Gaps = 82/484 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG+Y+TNF VRMDT+A++LYYP KPL TTR                              
Sbjct: 797  MGIYLTNFLVRMDTMANILYYPQKPLATTR------------------------------ 826

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYL+FRELPAG N+IVAI+CY+GYNQEDSVI+N S+++RG FR
Sbjct: 827  ---------------SMEYLKFRELPAGQNAIVAIMCYSGYNQEDSVIMNQSSIDRGLFR 871

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S++FRSY D E K    Q E+FEKP R T   M++  YDKL+DDG+IAPG  V+G+D++I
Sbjct: 872  SMYFRSYMDMEKKSGIQQLEEFEKPTRDTTLRMKHGTYDKLEDDGLIAPGTNVNGEDIII 931

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  +P + +EL   T+  ++RD ST L+++E G VDQV++T N +G KF K+R+RS R
Sbjct: 932  GKTAPIPPDSEELGQRTRGHTRRDVSTPLKSTEQGTVDQVLITTNSEGQKFVKVRIRSTR 991

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 992  IPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLS 1051

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             V++  G  GDATPF D + V+ +S  L++ GYQ RG EVM++GHTGRK+ AQ++LGPTY
Sbjct: 1052 KVATLIGNEGDATPFTD-LTVESVSQFLRQRGYQSRGLEVMYHGHTGRKLQAQIYLGPTY 1110

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQIL RQP+EGR+RDGGLRFGEMERDC ISHG A FL+ERL
Sbjct: 1111 YQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGIAAFLKERL 1170

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FE SD YR+HVC+ CGL AIAN++  TFEC+ CKNKT+ SQ+ +PYAAKLLFQEL SMNI
Sbjct: 1171 FEASDAYRLHVCDICGLTAIANLKKQTFECRACKNKTECSQLYIPYAAKLLFQELQSMNI 1230

Query: 445  APRL 448
            A RL
Sbjct: 1231 AARL 1234


>gi|145340678|ref|XP_001415447.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144575670|gb|ABO93739.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 1174

 Score =  544 bits (1401), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 270/489 (55%), Positives = 335/489 (68%), Gaps = 89/489 (18%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG+Y+TN+ +RMDTL +V++YP KPLVTTR+                             
Sbjct: 735  MGMYVTNYQIRMDTLGYVMFYPQKPLVTTRA----------------------------- 765

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                            MEYL FRELPAG N++VAI+CYTGYNQEDSV++N SA++RG FR
Sbjct: 766  ----------------MEYLHFRELPAGCNAVVAIMCYTGYNQEDSVLMNQSAIDRGLFR 809

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+++RS+KD E K+     E+FE+P+R TC GMR+  YDKLDDDG+I PG RVSGDD++I
Sbjct: 810  SLYYRSFKDEEKKQGSLSREEFERPDRDTCLGMRHGTYDKLDDDGLICPGTRVSGDDIII 869

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  LPE  D+    +KRFSK+D ST ++++ETGI+DQV+LT N  G +F K+RVRS+R
Sbjct: 870  GKTAPLPE--DDTAVLSKRFSKKDCSTGMKHAETGIIDQVLLTTNDQGLRFVKLRVRSMR 927

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
             PQ+GDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 928  TPQVGDKFSSRHGQKGTVGMTYTQEDMPFTCEGITPDIIVNPHAIPSRMTIGQLVECIMG 987

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             V++  G+ GDATPF   V  + IS++L + GYQ RGNEVM+NGHTGR ++AQ+F+GPTY
Sbjct: 988  KVAACMGKEGDATPFT-PVTAEDISSMLHKCGYQKRGNEVMYNGHTGRMLDAQIFIGPTY 1046

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSR RGPVQIL RQPMEGR+RDGGLRFGEMERDC +SHGAA FL+ERL
Sbjct: 1047 YQRLKHMVDDKIHSRGRGPVQILTRQPMEGRSRDGGLRFGEMERDCIMSHGAASFLKERL 1106

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKN---KTQISQVRLPYAAKLLFQELMS 441
             + SD YRIHVC  CGLIA+AN++N TFEC  CKN   +T + QV +PYA KLLFQELMS
Sbjct: 1107 MDQSDAYRIHVCQKCGLIAVANLKNQTFEC--CKNPSERTSVVQVMVPYACKLLFQELMS 1164

Query: 442  MNIAPRLMV 450
            M IAPRL+ 
Sbjct: 1165 MAIAPRLIT 1173


>gi|389751199|gb|EIM92272.1| DNA-dependent RNA polymerase II second largest subunit [Stereum
            hirsutum FP-91666 SS1]
          Length = 1230

 Score =  543 bits (1399), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 270/484 (55%), Positives = 331/484 (68%), Gaps = 82/484 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG+Y+TNF VRMDT+A++LYYP KPL TTR                              
Sbjct: 782  MGIYLTNFLVRMDTMANILYYPQKPLATTR------------------------------ 811

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 812  ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 856

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+++RSY D E K    Q E+FEKP R T   M++  YDKL+DDG+IAPG  V+G+D++I
Sbjct: 857  SIYYRSYMDLEKKSGIQQLEEFEKPTRDTTLRMKHGTYDKLEDDGLIAPGTGVNGEDIII 916

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  +P + +EL   T+  ++RD ST L+++E+GIVDQV++T N +G KF K+RVR+ R
Sbjct: 917  GKTAPIPPDSEELGQRTRIHTRRDVSTPLKSTESGIVDQVLITTNHEGQKFVKVRVRATR 976

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 977  IPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIVINPHAIPSRMTIGHLVECLLS 1036

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             V++  G  GDATPF D + V+ +S  L+  GYQ RG EVM++GHTGRK+ AQV+LGPTY
Sbjct: 1037 KVATLIGNEGDATPFTD-LTVESVSQFLRAQGYQSRGLEVMYHGHTGRKLQAQVYLGPTY 1095

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQIL RQP+EGR+RDGGLRFGEMERDC ISHG A FL+ERL
Sbjct: 1096 YQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGVAGFLKERL 1155

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            F+ SD YR+HVC+ CGL AIAN++  +FEC+ CKNKT  SQ+ +PYAAKLLFQEL SMNI
Sbjct: 1156 FDASDAYRLHVCDICGLTAIANLKKQSFECRACKNKTACSQIHIPYAAKLLFQELQSMNI 1215

Query: 445  APRL 448
            A RL
Sbjct: 1216 AARL 1219


>gi|393244464|gb|EJD51976.1| DNA-dependent RNA polymerase II second largest subunit [Auricularia
            delicata TFB-10046 SS5]
          Length = 1217

 Score =  543 bits (1398), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 269/487 (55%), Positives = 329/487 (67%), Gaps = 82/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG+Y+TNF VR DT+A++LYYP KPL TTR                              
Sbjct: 770  MGIYLTNFQVRQDTMANILYYPQKPLATTR------------------------------ 799

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 800  ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 844

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+++RSY D E K      E+FEKP R T   M++  YDKL+DDG+IAPG  V+G+D++I
Sbjct: 845  SIYYRSYMDVEKKSGMVALEEFEKPTRDTTLRMKHGTYDKLEDDGLIAPGTGVAGEDIII 904

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  LP++ +EL   T+   KRD ST L+++E GIVDQV++T N DG KF KIR+RS R
Sbjct: 905  GKTAPLPQDSEELGQRTRTHQKRDVSTPLKSTENGIVDQVLITTNQDGQKFVKIRIRSTR 964

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            +PQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 965  VPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGVTPDIIINPHAIPSRMTIGHLVECLLS 1024

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             V++  G  GDATPF D + V+ +S +L++ GY  RG EVM++GHTGRK+ AQV+LGPTY
Sbjct: 1025 KVATMIGNEGDATPFTD-LTVESVSQVLRQRGYHSRGLEVMYHGHTGRKLQAQVYLGPTY 1083

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQIL RQP+EGR+RDGGLRFGEMERDC ISHG A FL+ERL
Sbjct: 1084 YQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGLAAFLKERL 1143

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            F+ SD YR+HVC+ CGL AIAN++  +FEC+ CKNK  +SQ+ +PYAAKLL QEL SMNI
Sbjct: 1144 FDASDAYRLHVCDICGLTAIANLKKQSFECRACKNKVAVSQLYIPYAAKLLIQELQSMNI 1203

Query: 445  APRLMVV 451
            A RL  V
Sbjct: 1204 AARLYTV 1210


>gi|345561256|gb|EGX44352.1| hypothetical protein AOL_s00193g80 [Arthrobotrys oligospora ATCC
            24927]
          Length = 1258

 Score =  542 bits (1397), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 270/486 (55%), Positives = 339/486 (69%), Gaps = 85/486 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG+++TNF+ RMDT+A++LYYP KPL TTR                              
Sbjct: 810  MGIFLTNFNERMDTMANILYYPQKPLATTR------------------------------ 839

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SME+L+FRELPAG N+IV I+CY+GYNQEDSVI+N S+++RG FR
Sbjct: 840  ---------------SMEFLKFRELPAGQNAIVGIMCYSGYNQEDSVIMNQSSIDRGLFR 884

Query: 121  SVFFRSYKDAESKRIGDQE-EQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
            S+F+R+Y D+E KRIG    E+FEKP R     +++  YDKLDDDG++APG+RVSG+D++
Sbjct: 885  SLFYRAYMDSE-KRIGMTTIEEFEKPMRNNTLRLKHGTYDKLDDDGLVAPGVRVSGEDII 943

Query: 180  IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
            IGKT  +P + +EL   TK  +KRD ST LR++E GIVDQVMLT N +G +F K+R+R+ 
Sbjct: 944  IGKTAPIPADTEELGQRTKNHTKRDVSTPLRSTENGIVDQVMLTTNAEGMRFVKVRMRTT 1003

Query: 240  RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
            ++PQIGDKFASRHGQKGT GI YR E                                  
Sbjct: 1004 KVPQIGDKFASRHGQKGTIGITYRHEDMPFTAEGIVPDLIINPHAIPSRMTIAHLIECQL 1063

Query: 266  --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
              VSS +G  GDATPF + V V+ +S LL+E+GYQ RG EVM+NGHTG+K+  QVFLGPT
Sbjct: 1064 SKVSSLRGFEGDATPFTE-VTVENVSRLLREHGYQSRGFEVMYNGHTGKKLVCQVFLGPT 1122

Query: 324  YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRER 383
            YYQRL+HMVDDKIH+RARGPVQIL RQP+EGRARDGGLRFGEMERDC ISHGA+ FL+ER
Sbjct: 1123 YYQRLRHMVDDKIHARARGPVQILTRQPVEGRARDGGLRFGEMERDCMISHGASAFLKER 1182

Query: 384  LFEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSM 442
            LFEVSD +R+HVC+ CGL+  IAN++ N FEC+ C+NKT+ISQ+ LPYAAKLLFQEL +M
Sbjct: 1183 LFEVSDAFRVHVCDICGLMTPIANLKKNLFECRPCRNKTKISQIHLPYAAKLLFQELTAM 1242

Query: 443  NIAPRL 448
            NIA R+
Sbjct: 1243 NIAARM 1248


>gi|260944180|ref|XP_002616388.1| hypothetical protein CLUG_03629 [Clavispora lusitaniae ATCC 42720]
 gi|238850037|gb|EEQ39501.1| hypothetical protein CLUG_03629 [Clavispora lusitaniae ATCC 42720]
          Length = 858

 Score =  541 bits (1395), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 266/485 (54%), Positives = 333/485 (68%), Gaps = 83/485 (17%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+ VRMDT+A++LYYP KPL TTR                              
Sbjct: 409 MGVFLTNYSVRMDTMANILYYPQKPLATTR------------------------------ 438

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAI CY+GYNQEDS+I+N S+++RG FR
Sbjct: 439 ---------------SMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFR 483

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY D E ++     E FEKP+R     +++  Y+KLDDDG+IAPG+RVSG+D++I
Sbjct: 484 SLFFRSYMDLEKRQGMKALETFEKPSRSDTLRLKHGTYEKLDDDGLIAPGVRVSGEDIII 543

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  +KRD ST LR++E+GIVDQV+LT N DG KF K+R+R+ +
Sbjct: 544 GKTTPIPPDTEELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKVRMRTTK 603

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT G+ YR E                                   
Sbjct: 604 IPQIGDKFASRHGQKGTIGVTYRHEDMPFSAQGIVPDLIINPHAIPSRMTVAHLIECLLS 663

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            VSS  G  GDA+PF D V  + +S LL+E+GYQ RG EVM+NGHTG+K+ AQVF GPTY
Sbjct: 664 KVSSLSGLEGDASPFTD-VTAEAVSKLLREHGYQSRGFEVMYNGHTGKKLMAQVFFGPTY 722

Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
           YQRL+HMVDDKIH+RARGPVQ+L RQP+EGR+RDGGLRFGEMERDC I+HGAA FL+ERL
Sbjct: 723 YQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAGFLKERL 782

Query: 385 FEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMN 443
            E SD +R+HVC  CGL++ IAN++ N FEC+ CKNKT I Q+ +PYAAKLLFQELM+MN
Sbjct: 783 MEASDAFRVHVCGICGLMSVIANLKKNQFECRSCKNKTNIYQIHIPYAAKLLFQELMAMN 842

Query: 444 IAPRL 448
           I+PRL
Sbjct: 843 ISPRL 847


>gi|218554|dbj|BAA02600.1| RNA polymerase II second largest subunit [Schizosaccharomyces pombe]
          Length = 1210

 Score =  541 bits (1395), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 270/484 (55%), Positives = 335/484 (69%), Gaps = 82/484 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVY+TN+ VRMDT+A++LYYP KPL TTR                              
Sbjct: 767  MGVYLTNYQVRMDTMANILYYPQKPLATTR------------------------------ 796

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYL+FRELPAG N+IVAILCY+GYNQEDS+I+N ++++RG FR
Sbjct: 797  ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSIIMNQASIDRGLFR 841

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+F+R+Y D E K      E+FE+P R T   M++  YDKL+DDG+IAPG RVSG+D++I
Sbjct: 842  SIFYRTYTDQEKKIGMTVMEEFERPVRSTTLRMKHGTYDKLEDDGLIAPGTRVSGEDIII 901

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  +P + +EL   T+  +KRD ST LR++E+GIVDQVM+T N +G KF K+R+RS R
Sbjct: 902  GKTAPIPLDHEELGQRTQLHAKRDVSTPLRSTESGIVDQVMVTTNQEGLKFVKVRMRSTR 961

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGT G+ YR E                                   
Sbjct: 962  IPQIGDKFASRHGQKGTIGMTYRHEDMPFSAQGIVPDIIINPHAIPSRMTVAHLVECQLS 1021

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+  G  GDATPF D V V+ +S LL+ +G+Q RG EVM++GHTGRK+ AQVFLGPTY
Sbjct: 1022 KVSALSGFEGDATPFTD-VTVEAVSKLLRSHGFQSRGFEVMYHGHTGRKLVAQVFLGPTY 1080

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKH+VDDKIH+RARGPVQIL RQP+EGR+RDGGLRFGEMERDCQISHG +  LRERL
Sbjct: 1081 YQRLKHLVDDKIHARARGPVQILTRQPVEGRSRDGGLRFGEMERDCQISHGCSSVLRERL 1140

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            F+ SD YR+ VC+ CGLIAIA+ + +++EC+ C+N+T+ SQV LPYAAKLLFQELMSMNI
Sbjct: 1141 FDCSDAYRVIVCDICGLIAIASYKKDSYECRSCQNRTRFSQVYLPYAAKLLFQELMSMNI 1200

Query: 445  APRL 448
            APRL
Sbjct: 1201 APRL 1204


>gi|63054498|ref|NP_593101.2| RNA polymerase II complex subunit Rpb2 [Schizosaccharomyces pombe
            972h-]
 gi|19862286|sp|Q02061.2|RPB2_SCHPO RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA
            polymerase II subunit 2; Short=RNA polymerase II subunit
            B2; AltName: Full=DNA-directed RNA polymerase II 138 kDa
            polypeptide
 gi|256599716|pdb|3H0G|B Chain B, Rna Polymerase Ii From Schizosaccharomyces Pombe
 gi|256599728|pdb|3H0G|N Chain N, Rna Polymerase Ii From Schizosaccharomyces Pombe
 gi|159883907|emb|CAB86470.2| RNA polymerase II complex subunit Rpb2 [Schizosaccharomyces pombe]
          Length = 1210

 Score =  541 bits (1395), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 270/484 (55%), Positives = 335/484 (69%), Gaps = 82/484 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVY+TN+ VRMDT+A++LYYP KPL TTR                              
Sbjct: 767  MGVYLTNYQVRMDTMANILYYPQKPLATTR------------------------------ 796

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYL+FRELPAG N+IVAILCY+GYNQEDS+I+N ++++RG FR
Sbjct: 797  ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSIIMNQASIDRGLFR 841

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+F+R+Y D E K      E+FE+P R T   M++  YDKL+DDG+IAPG RVSG+D++I
Sbjct: 842  SIFYRTYTDQEKKIGMTVMEEFERPVRSTTLRMKHGTYDKLEDDGLIAPGTRVSGEDIII 901

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  +P + +EL   T+  +KRD ST LR++E+GIVDQVM+T N +G KF K+R+RS R
Sbjct: 902  GKTAPIPLDHEELGQRTQLHAKRDVSTPLRSTESGIVDQVMVTTNQEGLKFVKVRMRSTR 961

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGT G+ YR E                                   
Sbjct: 962  IPQIGDKFASRHGQKGTIGMTYRHEDMPFSAQGIVPDIIINPHAIPSRMTVAHLVECQLS 1021

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+  G  GDATPF D V V+ +S LL+ +G+Q RG EVM++GHTGRK+ AQVFLGPTY
Sbjct: 1022 KVSALSGFEGDATPFTD-VTVEAVSKLLRSHGFQSRGFEVMYHGHTGRKLVAQVFLGPTY 1080

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKH+VDDKIH+RARGPVQIL RQP+EGR+RDGGLRFGEMERDCQISHG +  LRERL
Sbjct: 1081 YQRLKHLVDDKIHARARGPVQILTRQPVEGRSRDGGLRFGEMERDCQISHGCSSVLRERL 1140

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            F+ SD YR+ VC+ CGLIAIA+ + +++EC+ C+N+T+ SQV LPYAAKLLFQELMSMNI
Sbjct: 1141 FDCSDAYRVIVCDICGLIAIASYKKDSYECRSCQNRTRFSQVYLPYAAKLLFQELMSMNI 1200

Query: 445  APRL 448
            APRL
Sbjct: 1201 APRL 1204


>gi|294659491|ref|XP_002770594.1| DEHA2G07502p [Debaryomyces hansenii CBS767]
 gi|199434003|emb|CAR65929.1| DEHA2G07502p [Debaryomyces hansenii CBS767]
          Length = 1232

 Score =  541 bits (1394), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 267/485 (55%), Positives = 332/485 (68%), Gaps = 83/485 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV++TN+ VRMDT+A++LYYP KPL TTR                              
Sbjct: 783  MGVFLTNYAVRMDTMANILYYPQKPLATTR------------------------------ 812

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYL+FRELPAG N+IVAI CY+GYNQEDS+I+N S+++RG FR
Sbjct: 813  ---------------SMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFR 857

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+FFRSY D E ++     E FEKP R     +R+  Y+KLDDDG+IAPG+RVSG+D++I
Sbjct: 858  SLFFRSYMDLEKRQGMKALETFEKPTRSDTLRLRHGTYEKLDDDGLIAPGVRVSGEDIII 917

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  +P + +EL   T+  +KRD ST LR++E+GIVDQV+LT N DG KF K+R+R+ +
Sbjct: 918  GKTTPIPPDAEELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKVRMRTTK 977

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGT G+ YR E                                   
Sbjct: 978  IPQIGDKFASRHGQKGTIGVTYRHEDMPFTSQGVVPDLIINPHAIPSRMTVAHLIECLLS 1037

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VSS  G  GDA+PF D V  + +S LL+E+GYQ RG EVM+NGHTG+K+ AQVF GPTY
Sbjct: 1038 KVSSLSGLEGDASPFTD-VTAEAVSKLLREHGYQSRGFEVMYNGHTGKKLMAQVFFGPTY 1096

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRL+HMVDDKIH+RARGPVQ+L RQP+EGR+RDGGLRFGEMERDC I+HGAA FL+ERL
Sbjct: 1097 YQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAGFLKERL 1156

Query: 385  FEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMN 443
             E SD +R+HVC  CGL++ IAN++ N FEC+ CKNKT I Q+ +PYAAKLLFQELM+MN
Sbjct: 1157 MEASDAFRVHVCGICGLMSVIANLKKNQFECRSCKNKTNIYQIHIPYAAKLLFQELMAMN 1216

Query: 444  IAPRL 448
            I+PRL
Sbjct: 1217 ISPRL 1221


>gi|320582153|gb|EFW96371.1| DNA-directed RNA polymerase II [Ogataea parapolymorpha DL-1]
          Length = 1275

 Score =  541 bits (1394), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 268/485 (55%), Positives = 329/485 (67%), Gaps = 83/485 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV++TN+ VRMDT+A++LYYP KPL  T+S                             
Sbjct: 827  MGVFLTNYSVRMDTMANILYYPQKPLAKTQS----------------------------- 857

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                            MEYL+FRELPAG N+IVAI CY+GYNQEDS+I+N S+++RG FR
Sbjct: 858  ----------------MEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFR 901

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+FFRSY D E +      E+FEKP R +  G +   Y+KLDDDG+IAPG+RVSGDD++I
Sbjct: 902  SLFFRSYMDQERRSGISVVEEFEKPMRSSTLGFKQGTYEKLDDDGLIAPGVRVSGDDIII 961

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT+ +P + +EL   TK  +KRD ST LR +E+GIVDQV+LT N +G KF K+R+R+ +
Sbjct: 962  GKTVPIPPDTEELGQRTKYHTKRDASTPLRTTESGIVDQVLLTTNAEGLKFAKVRMRTTK 1021

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            +PQIGDKFASRHGQKGT GI YR E                                   
Sbjct: 1022 VPQIGDKFASRHGQKGTIGITYRHEDMPFTAQGIVPDLIINPHAIPSRMTVAHLIECLLS 1081

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             V+S +G  GDATPF D + V  +S LL+E GYQ RG EVM+NGHTG+K+ AQVF GPTY
Sbjct: 1082 KVASMRGYEGDATPFTD-LTVDAVSKLLRENGYQSRGFEVMYNGHTGKKLMAQVFFGPTY 1140

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRL+HMVDDKIH+RARGP Q L RQPMEGRARDGGLRFGEMERDC I+HGAA FL+ERL
Sbjct: 1141 YQRLRHMVDDKIHARARGPYQNLTRQPMEGRARDGGLRFGEMERDCMIAHGAAGFLKERL 1200

Query: 385  FEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMN 443
             + SD +R+H+C  CGL++ IAN++ N FECK CKNKT I Q+ +PYAAKLLFQELMSMN
Sbjct: 1201 MDSSDAFRVHICGICGLMSVIANLKKNQFECKSCKNKTNIYQIHIPYAAKLLFQELMSMN 1260

Query: 444  IAPRL 448
            IAPRL
Sbjct: 1261 IAPRL 1265


>gi|448117721|ref|XP_004203325.1| Piso0_000931 [Millerozyma farinosa CBS 7064]
 gi|359384193|emb|CCE78897.1| Piso0_000931 [Millerozyma farinosa CBS 7064]
          Length = 1233

 Score =  540 bits (1390), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 264/485 (54%), Positives = 334/485 (68%), Gaps = 83/485 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV++TN+ VRMDT+A++LYYP KPL TTR+                             
Sbjct: 784  MGVFLTNYSVRMDTMANILYYPQKPLATTRA----------------------------- 814

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                            ME+L+FRELPAG N+IVAI CY+GYNQEDS+I+N S+++RG FR
Sbjct: 815  ----------------MEHLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFR 858

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+FFRSY D E ++     E FEKP+R     +++  Y+KLDDDG+IAPG+RVSG+D++I
Sbjct: 859  SLFFRSYMDLEKRQGMKALETFEKPSRSDTLKLKHGTYEKLDDDGLIAPGVRVSGEDIII 918

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  +P + +EL   T+  +KRD ST LR++E+GIVDQV+LT N DG KF K+R+R+ +
Sbjct: 919  GKTTPIPPDTEELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKVRMRTTK 978

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGT G+ YR E                                   
Sbjct: 979  IPQIGDKFASRHGQKGTIGVTYRHEDMPFTAQGVVPDLIINPHAIPSRMTVAHLIECLLS 1038

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VSS  G  GDA+PF D V V+ +S LL+E+GYQ RG EVM+NGHTG+K+ AQ+F GPTY
Sbjct: 1039 KVSSLSGLEGDASPFTD-VTVEAVSKLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTY 1097

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRL+HMVDDKIH+RARGPVQ+L RQP+EGR+RDGGLRFGEMERDC I+HGAA FL+ERL
Sbjct: 1098 YQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAGFLKERL 1157

Query: 385  FEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMN 443
             E SD +R+HVC  CGL++ IAN++ N FEC+ CKNKT I Q+ +PYAAKLLFQELM+MN
Sbjct: 1158 MEASDAFRVHVCGICGLMSVIANLKKNQFECRSCKNKTNIYQIHIPYAAKLLFQELMAMN 1217

Query: 444  IAPRL 448
            I+PRL
Sbjct: 1218 ISPRL 1222


>gi|68475107|ref|XP_718439.1| hypothetical protein CaO19.10857 [Candida albicans SC5314]
 gi|68475648|ref|XP_718172.1| hypothetical protein CaO19.3349 [Candida albicans SC5314]
 gi|46439928|gb|EAK99240.1| hypothetical protein CaO19.3349 [Candida albicans SC5314]
 gi|46440204|gb|EAK99513.1| hypothetical protein CaO19.10857 [Candida albicans SC5314]
 gi|238879352|gb|EEQ42990.1| DNA-directed RNA polymerase II polypeptide 2 [Candida albicans WO-1]
          Length = 1234

 Score =  539 bits (1389), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 265/485 (54%), Positives = 334/485 (68%), Gaps = 83/485 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV++TN+ VRMDT+A++LYYP KPL TTR                              
Sbjct: 785  MGVFLTNYSVRMDTMANILYYPQKPLGTTR------------------------------ 814

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYL+FRELPAG N+IVAI CY+GYNQEDS+I+N S+++RG FR
Sbjct: 815  ---------------SMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFR 859

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+FFRSY D E ++     E FEKP R     +++  Y+KLD+DG+IAPG+RVSG+D++I
Sbjct: 860  SLFFRSYMDIEKRQGMKALETFEKPTRSDTLRLKHGTYEKLDEDGLIAPGVRVSGEDIII 919

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  +P + +EL   T+  +KRD ST LR++E+GIVDQV+LT N DG KF K+R+R+ +
Sbjct: 920  GKTTPIPADAEELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDGSKFVKVRMRTTK 979

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            +PQIGDKFASRHGQKGT G+ YR E                                   
Sbjct: 980  VPQIGDKFASRHGQKGTIGVTYRHEDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLS 1039

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VSS  G  GDA+PF D V  ++ISTLL+++GYQ RG EVM+NGHTG+K+ AQVF GPTY
Sbjct: 1040 KVSSLSGFEGDASPFTD-VTTEQISTLLRDHGYQSRGFEVMYNGHTGKKLMAQVFFGPTY 1098

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRL+HMVDDKIH+RARGPVQ+L RQP+EGR+RDGGLRFGEMERDC I+HGAA FL+ERL
Sbjct: 1099 YQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAGFLKERL 1158

Query: 385  FEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMN 443
             E SD +R+HVC  CGL++ IAN++ N FEC+ CKNKT I Q+ +PYAAKLLFQELM+MN
Sbjct: 1159 MEASDAFRVHVCGMCGLMSVIANLKKNQFECRSCKNKTNIYQIHIPYAAKLLFQELMAMN 1218

Query: 444  IAPRL 448
            I+PRL
Sbjct: 1219 ISPRL 1223


>gi|448120161|ref|XP_004203908.1| Piso0_000931 [Millerozyma farinosa CBS 7064]
 gi|359384776|emb|CCE78311.1| Piso0_000931 [Millerozyma farinosa CBS 7064]
          Length = 1233

 Score =  539 bits (1388), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 264/485 (54%), Positives = 334/485 (68%), Gaps = 83/485 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV++TN+ VRMDT+A++LYYP KPL TTR+                             
Sbjct: 784  MGVFLTNYSVRMDTMANILYYPQKPLATTRA----------------------------- 814

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                            ME+L+FRELPAG N+IVAI CY+GYNQEDS+I+N S+++RG FR
Sbjct: 815  ----------------MEHLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFR 858

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+FFRSY D E ++     E FEKP+R     +++  Y+KLDDDG+IAPG+RVSG+D++I
Sbjct: 859  SLFFRSYMDLEKRQGMKALETFEKPSRSDTLRLKHGTYEKLDDDGLIAPGVRVSGEDIII 918

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  +P + +EL   T+  +KRD ST LR++E+GIVDQV+LT N DG KF K+R+R+ +
Sbjct: 919  GKTTPIPPDTEELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKVRMRTTK 978

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            +PQIGDKFASRHGQKGT G+ YR E                                   
Sbjct: 979  VPQIGDKFASRHGQKGTIGVTYRHEDMPFTAQGVVPDLIINPHAIPSRMTVAHLIECLLS 1038

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VSS  G  GDA+PF D V V+ IS LL+E+GYQ RG EVM+NGHTG+K+ AQ+F GPTY
Sbjct: 1039 KVSSLSGLEGDASPFTD-VTVEAISKLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTY 1097

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRL+HMVDDKIH+RARGPVQ+L RQP+EGR+RDGGLRFGEMERDC I+HGAA FL+ERL
Sbjct: 1098 YQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAGFLKERL 1157

Query: 385  FEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMN 443
             E SD +R+HVC  CGL++ IAN++ N FEC+ CKNKT I Q+ +PYAAKLLFQELM+MN
Sbjct: 1158 MEASDAFRVHVCGICGLMSVIANLKKNQFECRSCKNKTNIYQIHIPYAAKLLFQELMAMN 1217

Query: 444  IAPRL 448
            I+PRL
Sbjct: 1218 ISPRL 1222


>gi|241948201|ref|XP_002416823.1| DNA-dependent RNA polymerase II component, putative [Candida
            dubliniensis CD36]
 gi|223640161|emb|CAX44408.1| DNA-dependent RNA polymerase II component, putative [Candida
            dubliniensis CD36]
          Length = 1234

 Score =  539 bits (1388), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 265/485 (54%), Positives = 334/485 (68%), Gaps = 83/485 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV++TN+ VRMDT+A++LYYP KPL TTR                              
Sbjct: 785  MGVFLTNYSVRMDTMANILYYPQKPLGTTR------------------------------ 814

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYL+FRELPAG N+IVAI CY+GYNQEDS+I+N S+++RG FR
Sbjct: 815  ---------------SMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFR 859

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+FFRSY D E ++     E FEKP R     +++  Y+KLD+DG+IAPG+RVSG+D++I
Sbjct: 860  SLFFRSYMDIEKRQGMKALETFEKPTRSDTLRLKHGTYEKLDEDGLIAPGVRVSGEDIII 919

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  +P + +EL   T+  +KRD ST LR++E+GIVDQV+LT N DG KF K+R+R+ +
Sbjct: 920  GKTTPIPADAEELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKVRMRTTK 979

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            +PQIGDKFASRHGQKGT G+ YR E                                   
Sbjct: 980  VPQIGDKFASRHGQKGTIGVTYRHEDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLS 1039

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VSS  G  GDA+PF D V  ++ISTLL+++GYQ RG EVM+NGHTG+K+ AQVF GPTY
Sbjct: 1040 KVSSLSGFEGDASPFTD-VTTEQISTLLRDHGYQSRGFEVMYNGHTGKKLMAQVFFGPTY 1098

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRL+HMVDDKIH+RARGPVQ+L RQP+EGR+RDGGLRFGEMERDC I+HGAA FL+ERL
Sbjct: 1099 YQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAGFLKERL 1158

Query: 385  FEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMN 443
             E SD +R+HVC  CGL++ IAN++ N FEC+ CKNKT I Q+ +PYAAKLLFQELM+MN
Sbjct: 1159 MEASDAFRVHVCGMCGLMSVIANLKKNQFECRSCKNKTNIYQIHIPYAAKLLFQELMAMN 1218

Query: 444  IAPRL 448
            I+PRL
Sbjct: 1219 ISPRL 1223


>gi|255717775|ref|XP_002555168.1| KLTH0G02970p [Lachancea thermotolerans]
 gi|238936552|emb|CAR24731.1| KLTH0G02970p [Lachancea thermotolerans CBS 6340]
          Length = 1220

 Score =  538 bits (1387), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 269/486 (55%), Positives = 332/486 (68%), Gaps = 85/486 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV++TN+ VRMDT+A++LYYP KPL TTR                              
Sbjct: 774  MGVFLTNYSVRMDTMANILYYPQKPLGTTR------------------------------ 803

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYL+FRELPAG N+IVAI CY+GYNQEDS+I+N S+++RG FR
Sbjct: 804  ---------------SMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFR 848

Query: 121  SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
            S+FFRSY D E KRIG    E FEKP R     M++  YDKLDDDG+IAPG+RVSGDD++
Sbjct: 849  SLFFRSYMDQE-KRIGMSITESFEKPQRTNTLRMKHGTYDKLDDDGLIAPGVRVSGDDMI 907

Query: 180  IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
            IGKT  +P + +EL   T   SKRD ST LR++E GIVDQV++T N +G KF K+RVR+ 
Sbjct: 908  IGKTTPIPPDAEELGQRTAFHSKRDASTPLRSTENGIVDQVLITTNQEGLKFVKVRVRTT 967

Query: 240  RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
            ++PQIGDKFASRHGQKGT GI YR+E                                  
Sbjct: 968  KVPQIGDKFASRHGQKGTIGITYRREDMPFTAEGVVPDLIINPHAIPSRMTVAHLIECLL 1027

Query: 266  --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
              V++  G  GDA+PF D + V  IS LL+E+GYQ RG EVM+NGHTG+K+ AQ+F GPT
Sbjct: 1028 SKVAALSGNEGDASPFTD-ITVDGISRLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPT 1086

Query: 324  YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRER 383
            YYQRL+HMVDDKIH+RARGPVQ+L RQP+EGR+RDGGLRFGEMERDC I+HGAA FL+ER
Sbjct: 1087 YYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAAFLKER 1146

Query: 384  LFEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSM 442
            L E SD +R+H+C  CGL+  +A +++N FEC+GCKNK  I Q+ +PYAAKLLFQELM+M
Sbjct: 1147 LMEASDAFRVHICGVCGLMTVVAKLKHNQFECRGCKNKIDIYQIHIPYAAKLLFQELMAM 1206

Query: 443  NIAPRL 448
            NIAPRL
Sbjct: 1207 NIAPRL 1212


>gi|393218117|gb|EJD03605.1| DNA-dependent RNA polymerase II second largest subunit [Fomitiporia
            mediterranea MF3/22]
          Length = 1274

 Score =  538 bits (1387), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 267/487 (54%), Positives = 332/487 (68%), Gaps = 82/487 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG+Y+TNF +R DT+A++LYYP KPL TTR+                             
Sbjct: 827  MGIYLTNFLMRQDTMANILYYPQKPLATTRA----------------------------- 857

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                            MEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 858  ----------------MEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 901

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+++R+Y D E +      ++FEKP R T   M++  YDKL+DDG+IAPG+ V GDD++I
Sbjct: 902  SLYYRTYMDQEKRSGAIIVDEFEKPTRDTTLRMKHGTYDKLEDDGLIAPGVNVRGDDIII 961

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  +P + +EL   T+  +KRD ST L+++E GIVDQV++T N +G KF KIRVRS R
Sbjct: 962  GKTAPIPPDSEELGQRTRGHTKRDISTPLKSTEQGIVDQVVVTTNAEGTKFVKIRVRSTR 1021

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 1022 IPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLS 1081

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             +++  G  GDATPF D + V  +S++L+E GYQ RG EVM++GHTGRK+ AQV+LGPTY
Sbjct: 1082 KLATIVGNEGDATPFTD-LTVDSVSSVLREKGYQSRGLEVMYHGHTGRKLQAQVYLGPTY 1140

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIH+RARGPVQIL RQP+EGR+RDGGLRFGEMERDC ISHG A FL+ERL
Sbjct: 1141 YQRLKHMVDDKIHARARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGIAAFLKERL 1200

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            F+ SD YR+HVC+ CGL AIAN++  +FEC+ CKNKT ISQ+ +PYAAKLLFQEL +MNI
Sbjct: 1201 FDASDAYRLHVCDLCGLTAIANLKKQSFECRACKNKTSISQLYIPYAAKLLFQELQAMNI 1260

Query: 445  APRLMVV 451
            A RL  V
Sbjct: 1261 AARLYTV 1267


>gi|255730467|ref|XP_002550158.1| DNA-directed RNA polymerase II 140 kDa polypeptide [Candida
            tropicalis MYA-3404]
 gi|240132115|gb|EER31673.1| DNA-directed RNA polymerase II 140 kDa polypeptide [Candida
            tropicalis MYA-3404]
          Length = 1240

 Score =  538 bits (1386), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 265/485 (54%), Positives = 332/485 (68%), Gaps = 83/485 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV++TN+ VRMDT+A++LYYP KPL TTR                              
Sbjct: 791  MGVFLTNYSVRMDTMANILYYPQKPLATTR------------------------------ 820

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYL+FRELPAG N++VAI CY+GYNQEDS+I+N S+++RG FR
Sbjct: 821  ---------------SMEYLKFRELPAGQNAVVAIACYSGYNQEDSMIMNQSSIDRGLFR 865

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+FFRSY D E ++     E FEKP+R     +++  Y+KLD+DG+IAPG+RVSG+D++I
Sbjct: 866  SLFFRSYMDLEKRQGMKLLETFEKPSRSDTLRLKHGTYEKLDEDGLIAPGIRVSGEDIII 925

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  +P + +EL   T   SKRD ST LR++E+GIVDQV+LT N DG KF K+R+R+ +
Sbjct: 926  GKTTPIPADTEELGQRTLHHSKRDASTPLRSTESGIVDQVLLTTNGDGSKFVKVRMRTTK 985

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGT G+ YR E                                   
Sbjct: 986  IPQIGDKFASRHGQKGTIGVTYRHEDMPFSAEGIVPDLIINPHAIPSRMTVAHLIECLLS 1045

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VSS  G  GDA+PF D V  + I+ LL+E+GYQ RG EVM+NGHTG+K+ AQVF GPTY
Sbjct: 1046 KVSSLSGFEGDASPFTD-VTAEAIAKLLREHGYQSRGFEVMYNGHTGKKLMAQVFFGPTY 1104

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRL+HMVDDKIH+RARGPVQ+L RQP+EGR+RDGGLRFGEMERDC I+HGAA FL+ERL
Sbjct: 1105 YQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAGFLKERL 1164

Query: 385  FEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMN 443
             E SD +R+HVC  CGL++ IAN++ N FEC+ CKNKT I Q+ +PYAAKLLFQELM+MN
Sbjct: 1165 MEASDAFRVHVCGMCGLMSVIANLKKNQFECRSCKNKTNIYQIHIPYAAKLLFQELMAMN 1224

Query: 444  IAPRL 448
            I+PRL
Sbjct: 1225 ISPRL 1229


>gi|68300799|gb|AAY89342.1| RNA polymerase II second largest subunit [Nicotiana sylvestris]
          Length = 1203

 Score =  538 bits (1386), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 270/486 (55%), Positives = 327/486 (67%), Gaps = 84/486 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG+Y+TN+  RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 754  MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA----------------------------- 784

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                            ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 785  ----------------MEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFR 828

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+FFRSY+D E K     +E F +P+R+   GMR+  YDKLDDDG   PG RVSGDDV+I
Sbjct: 829  SLFFRSYRDEEKKMGTLVKEDFGRPDRENTMGMRHGSYDKLDDDGFAPPGTRVSGDDVII 888

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT   P ++D+ +G   R++++D ST LR+SETGIVDQV+LT N DG +F KIR+RSVR
Sbjct: 889  GKTT--PISQDDAQGQPARYTQKDHSTSLRHSETGIVDQVLLTTNADGLRFVKIRMRSVR 946

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 947  IPQIGDKFSSRHGQKGTIGMTYTQEDMPWNIEGITPDIIVNPHAIPSRMTIGQLVECIMG 1006

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             V+++ G+ GDATPF D V V  IS  L   GYQ+RG E M+NGHTGR + A +FLGPTY
Sbjct: 1007 KVAAHMGKEGDATPFTD-VTVDNISKALHRCGYQMRGFERMYNGHTGRVLTAMIFLGPTY 1065

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGGLRFGEMERDC I+HGAA FL+ERL
Sbjct: 1066 YQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERL 1125

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            F+ SD YR+HVC  CGLIAIAN++  +FEC+ C+NKT   QV +PYA KLL QELMSM I
Sbjct: 1126 FDQSDAYRVHVCQQCGLIAIANLKKMSFECRSCRNKTDNVQVYIPYACKLLIQELMSMAI 1185

Query: 445  APRLMV 450
            APR++ 
Sbjct: 1186 APRMLT 1191


>gi|361128142|gb|EHL00094.1| putative DNA-directed RNA polymerase II subunit RPB2 [Glarea
            lozoyensis 74030]
          Length = 1263

 Score =  538 bits (1385), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 270/486 (55%), Positives = 337/486 (69%), Gaps = 85/486 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV++TNF VRMDT+A++LYYP KPL TTR                              
Sbjct: 815  MGVFLTNFDVRMDTMANILYYPQKPLATTR------------------------------ 844

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 845  ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 889

Query: 121  SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
            S+F+R+Y D E KRIG +  EQFEKP R     +++  YDKLDDDGI+APG+RVSG+D++
Sbjct: 890  SLFYRAYTDQE-KRIGMNVVEQFEKPFRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDII 948

Query: 180  IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
            IGKT  +  + +EL   TK  +KRD ST LR++E GIVDQV++T N +G +F K+R+R+ 
Sbjct: 949  IGKTAPMAPDAEELGQRTKAHTKRDASTPLRSTENGIVDQVLITTNAEGLRFVKVRMRTT 1008

Query: 240  RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
            +IPQIGDKFASRHGQKGT GI YR E                                  
Sbjct: 1009 KIPQIGDKFASRHGQKGTIGITYRMEDMPFTSQGIVPDLIINPHAIPSRMTIAHLIECQL 1068

Query: 266  --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
              VS+ +G  GDATPF + V V  +S LL+++GYQ RG E+M++GHTGRK+ AQVFLGPT
Sbjct: 1069 SKVSTLRGLEGDATPFTE-VTVDSVSKLLRDHGYQSRGFEIMYHGHTGRKMMAQVFLGPT 1127

Query: 324  YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRER 383
            YYQRL+HMVDDKIH+RARGPVQIL RQP+EGRARDGGLRFGEMERDC ISHGAA FL+ER
Sbjct: 1128 YYQRLRHMVDDKIHARARGPVQILTRQPVEGRARDGGLRFGEMERDCMISHGAAAFLKER 1187

Query: 384  LFEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSM 442
            LFEVSD +R+H+C+ CGL+  IA +++  FEC+ CKNKT+ISQ+ +PYAAKLLFQEL SM
Sbjct: 1188 LFEVSDAFRVHLCDICGLMTPIAKLQSQNFECRSCKNKTRISQIHIPYAAKLLFQELASM 1247

Query: 443  NIAPRL 448
            NIA R+
Sbjct: 1248 NIAARM 1253


>gi|363752349|ref|XP_003646391.1| hypothetical protein Ecym_4538 [Eremothecium cymbalariae DBVPG#7215]
 gi|356890026|gb|AET39574.1| hypothetical protein Ecym_4538 [Eremothecium cymbalariae DBVPG#7215]
          Length = 1222

 Score =  538 bits (1385), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 268/486 (55%), Positives = 334/486 (68%), Gaps = 85/486 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV++TN++VRMDT+A++LYYP KPL TTR                              
Sbjct: 776  MGVFLTNYNVRMDTMANILYYPQKPLGTTR------------------------------ 805

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           +MEYL+FRELPAG N+IVAI CY+GYNQEDS+I+N S+++RG FR
Sbjct: 806  ---------------AMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFR 850

Query: 121  SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
            S+FFRSY D E KRIG    E FEKP+R     M++  YDKLDDDG+IAPG+RVSGDD++
Sbjct: 851  SLFFRSYMDQE-KRIGMSITESFEKPHRTNTLRMKHGTYDKLDDDGLIAPGVRVSGDDMI 909

Query: 180  IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
            IGKT  +P + +EL   T   SKRD ST LR++E GIVDQV++T N +G KF K+RVR+ 
Sbjct: 910  IGKTTPIPPDAEELGQRTAFHSKRDASTPLRSTENGIVDQVLITTNQEGLKFVKVRVRTT 969

Query: 240  RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
            ++PQIGDKFASRHGQKGT GI YR+E                                  
Sbjct: 970  KVPQIGDKFASRHGQKGTIGITYRREDMPFTSEGVVPDLIINPHAIPSRMTVAHLIECLL 1029

Query: 266  --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
              V++  G  GDA+PF D + V  IS LL+E+GYQ RG EVM+NGHTG+K+ AQ+F GPT
Sbjct: 1030 SKVAALSGNEGDASPFTD-ITVDGISRLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPT 1088

Query: 324  YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRER 383
            YYQRL+HMVDDKIH+RARGP+Q+L RQP+EGR+RDGGLRFGEMERDC I+HGAA FL+ER
Sbjct: 1089 YYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAAFLKER 1148

Query: 384  LFEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSM 442
            L E SD +R+H+C  CGL+  +A +++N FEC+GCKNK  I QV +PYAAKLLFQELM+M
Sbjct: 1149 LMEASDAFRVHICGICGLMTVVAKLKHNQFECRGCKNKIDIFQVHIPYAAKLLFQELMAM 1208

Query: 443  NIAPRL 448
            NIAPRL
Sbjct: 1209 NIAPRL 1214


>gi|440639504|gb|ELR09423.1| DNA-directed RNA polymerase II subunit B [Geomyces destructans
            20631-21]
          Length = 1272

 Score =  538 bits (1385), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 271/488 (55%), Positives = 334/488 (68%), Gaps = 85/488 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV++TNF  RMDT+A++LYYP KPL  TR                              
Sbjct: 824  MGVFLTNFDQRMDTMANILYYPQKPLAITR------------------------------ 853

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 854  ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 898

Query: 121  SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
            S+F+R+Y D E KRIG +  EQFEKP R     +++  YDKLDDDGI+APG+R+SG+D++
Sbjct: 899  SLFYRAYHDQE-KRIGMNVVEQFEKPFRSDTLKLKHGTYDKLDDDGIVAPGVRISGEDII 957

Query: 180  IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
            IGKT  LP + +EL   TK  +KRD ST LR++E GIVDQV++T N +G +F K+R+R+ 
Sbjct: 958  IGKTAPLPPDAEELGQRTKSHTKRDASTPLRSTENGIVDQVLITTNAEGLRFVKVRMRTT 1017

Query: 240  RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
            +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 1018 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTREGVVPDLIINPHAIPSRMTIAHLIECQL 1077

Query: 266  --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
              V+S  G+ GDATPF D V V  +S+ L++ GYQ RG EVM++GHTGRK+ AQVFLGPT
Sbjct: 1078 SKVASLIGKEGDATPFTD-VTVDSVSSRLRDMGYQSRGFEVMYHGHTGRKLVAQVFLGPT 1136

Query: 324  YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRER 383
            YYQRL+HMVDDKIH+RARGP QIL RQP+EGRARDGGLRFGEMERDC ISHGA+ FL+ER
Sbjct: 1137 YYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRFGEMERDCMISHGASAFLKER 1196

Query: 384  LFEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSM 442
            LFEVSD +R+HVC+ CGL+  IA +   +FEC+ C+NKT+ISQV +PYA KLLFQEL SM
Sbjct: 1197 LFEVSDAFRVHVCDICGLMTPIAKLNTQSFECRPCRNKTKISQVHIPYATKLLFQELASM 1256

Query: 443  NIAPRLMV 450
            NIA R+  
Sbjct: 1257 NIAARMFT 1264


>gi|354544175|emb|CCE40898.1| hypothetical protein CPAR2_109360 [Candida parapsilosis]
          Length = 1228

 Score =  537 bits (1384), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 264/485 (54%), Positives = 332/485 (68%), Gaps = 83/485 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV++TN+ VRMDT+A++LYYP KPL TTR+                             
Sbjct: 779  MGVFLTNYAVRMDTMANILYYPQKPLATTRA----------------------------- 809

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                            ME+L+FRELPAG N+IVAI CY+GYNQEDS+I+N S+++RG+FR
Sbjct: 810  ----------------MEHLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGFFR 853

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+FFRSY D E ++     E FEKP+R     +++  Y+KLDDDG+IAPG+RVSG+D++I
Sbjct: 854  SLFFRSYMDLEKRQGMKALETFEKPSRSDTLRLKHGTYEKLDDDGLIAPGVRVSGEDIII 913

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  +P + +EL   T+  +KRD ST LR++E+GIVDQV+LT N DG KF K+R+R+ +
Sbjct: 914  GKTTPIPPDTEELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKVRMRTTK 973

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            +PQIGDKFASRHGQKGT G+ YR E                                   
Sbjct: 974  VPQIGDKFASRHGQKGTIGVTYRHEDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLS 1033

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VSS  G  GDA+PF D V  + IS LL+E+GYQ RG EVM+NGHTG+K+ AQVF GPTY
Sbjct: 1034 KVSSLSGLEGDASPFTD-VTAEAISKLLREHGYQSRGFEVMYNGHTGKKLMAQVFFGPTY 1092

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRL+HMVDDKIH+RARGPVQ+L RQP+EGR+RDGGLRFGEMERDC I+HGAA FL+ERL
Sbjct: 1093 YQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAGFLKERL 1152

Query: 385  FEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMN 443
             E SD +R+HVC  CGL+  IAN++ N FEC+ CKNKT I Q+ +PYAAKLLFQELM+MN
Sbjct: 1153 MEASDAFRVHVCGSCGLMTVIANLKKNQFECRSCKNKTNIYQIHIPYAAKLLFQELMAMN 1212

Query: 444  IAPRL 448
            I PRL
Sbjct: 1213 ITPRL 1217


>gi|70794968|gb|AAZ08458.1| RNA polymerase II second largest subunit [Rhododendron macrophyllum]
          Length = 1207

 Score =  537 bits (1383), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 266/486 (54%), Positives = 328/486 (67%), Gaps = 84/486 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG+Y+TN+ +RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 758  MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA----------------------------- 788

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                            ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 789  ----------------MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 832

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+F+RSY+D E K     +E F  PNR+   GMR+  YDKLDDDG   PG RV+G+DV+I
Sbjct: 833  SIFYRSYRDEEKKMGTLVKEDFGCPNRENTMGMRHGSYDKLDDDGFAPPGTRVAGEDVII 892

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT   P   D+ +G T R+++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RS+R
Sbjct: 893  GKTT--PIAPDDAQGQTARYTRRDHSTCLRHSESGMVDQVLLTTNADGLRFVKMRMRSIR 950

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 951  IPQIGDKFSSRHGQKGTIGMAYTQEDMPWTIEGICPDIIVNPHAIPSRMTIGQLIECIMG 1010

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGR +   +FLGPTY
Sbjct: 1011 KVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFERMYNGHTGRPLTYTIFLGPTY 1069

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGGLRFGEMERDC I+HGAA FL+ERL
Sbjct: 1070 YQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERL 1129

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            F+ SD YR+HVC  CG++AIAN++ N+FEC+ CKNKT I QV +PYA KLL QELM+M I
Sbjct: 1130 FDQSDAYRVHVCALCGIVAIANLKKNSFECRHCKNKTDIVQVYIPYACKLLLQELMAMAI 1189

Query: 445  APRLMV 450
            APRL+ 
Sbjct: 1190 APRLLT 1195


>gi|290973756|ref|XP_002669613.1| DNA-directed RNA polymerase II [Naegleria gruberi]
 gi|284083163|gb|EFC36869.1| DNA-directed RNA polymerase II [Naegleria gruberi]
          Length = 1233

 Score =  537 bits (1383), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 269/487 (55%), Positives = 325/487 (66%), Gaps = 84/487 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNF  RMDTLAHVLYYP +PLVTT+ M                            
Sbjct: 793  MGVYITNFQQRMDTLAHVLYYPQRPLVTTQPM---------------------------- 824

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                             EYLRF ELPAG N++VAI CY+GYNQEDSVI+N SA++RG FR
Sbjct: 825  -----------------EYLRFGELPAGQNAVVAIACYSGYNQEDSVIMNQSAIDRGLFR 867

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+R+Y D E K+     E FEKP R T  GM+ + Y+KL+DDGIIAPG+RVSG D++I
Sbjct: 868  SVFYRTYSDHERKKGNFLLENFEKPKRDTTAGMKTSTYEKLEDDGIIAPGVRVSGSDIII 927

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT+ LP  E+  +  T R ++ D ST LR++E GIVD V++T + +G+KF KI+VR VR
Sbjct: 928  GKTVPLP--EESAKQKTSRQTRLDMSTPLRSNENGIVDTVVVTTDSEGFKFVKIKVRVVR 985

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKF+SRHGQKGTCGI YRQE                                   
Sbjct: 986  IPQIGDKFSSRHGQKGTCGITYRQEDLPFTREGIVPDIIVNPHAIPSRMTVGQLIECLLG 1045

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             +SS  G  GDATPF DA NV   S +L   GYQ R NEVMFNGHTGRK+ AQ+F+GPTY
Sbjct: 1046 KISSLSGNEGDATPFTDA-NVNYFSEMLHSLGYQKRANEVMFNGHTGRKLEAQIFIGPTY 1104

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGP+Q L RQP+EGRARDGGLRFGEMERDC ISHG+A +L+ERL
Sbjct: 1105 YQRLKHMVDDKIHSRARGPLQNLTRQPVEGRARDGGLRFGEMERDCMISHGSAAWLKERL 1164

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            F+VSD YR+H+CN CG++A AN++   F+C  C NKT  SQV +PYA KL+ QELM+MN+
Sbjct: 1165 FQVSDEYRVHICNVCGMMATANIKQQQFKCDACDNKTSFSQVFIPYAFKLMIQELMAMNL 1224

Query: 445  APRLMVV 451
            A R++  
Sbjct: 1225 AVRIITA 1231


>gi|344234576|gb|EGV66444.1| beta and beta-prime subunits of DNA dependent RNA-polymerase [Candida
            tenuis ATCC 10573]
          Length = 1233

 Score =  537 bits (1383), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 262/485 (54%), Positives = 333/485 (68%), Gaps = 83/485 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV++TN+ VRMDT+A++LYYP KPL TTR                              
Sbjct: 784  MGVFLTNYSVRMDTMANILYYPQKPLATTR------------------------------ 813

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYL+FRELPAG N+IVAI CY+GYNQEDS+I+N S+++RG FR
Sbjct: 814  ---------------SMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFR 858

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+FFRSY D E ++     E FE+P+R     +++  Y+KLDDDG+I PG+RVSG+D++I
Sbjct: 859  SLFFRSYMDLEKRQGMKALETFERPSRSDTLRLKHGTYEKLDDDGLITPGVRVSGEDIII 918

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  +P + +EL   T+  +KRD ST LR++E+GIVDQV+LT N DG KF K+R+R+ +
Sbjct: 919  GKTTPIPPDAEELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKVRMRTTK 978

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            +PQIGDKFASRHGQKGT G+ YR E                                   
Sbjct: 979  VPQIGDKFASRHGQKGTIGVTYRNEDMPFTSQGIVPDLIINPHAIPSRMTVAHLIECLLS 1038

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VSS  G  GDA+PF D V  +++S LL+E+GYQ RG EVM+NGHTG+K+ AQVF GPTY
Sbjct: 1039 KVSSLSGLEGDASPFTD-VTAEEVSKLLREHGYQSRGFEVMYNGHTGKKLMAQVFFGPTY 1097

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRL+HMVDDKIH+RARGPVQ+L RQP+EGR+RDGGLRFGEMERDC I+HGAA FL+ERL
Sbjct: 1098 YQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAGFLKERL 1157

Query: 385  FEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMN 443
             E SD +R+HVC  CGL++ IAN++ N FEC+ CKNKT I Q+ +PYAAKLLFQELM+MN
Sbjct: 1158 MEASDAFRVHVCGICGLMSVIANLKKNQFECRACKNKTNIYQIHIPYAAKLLFQELMAMN 1217

Query: 444  IAPRL 448
            I+PR+
Sbjct: 1218 ISPRM 1222


>gi|150951109|ref|XP_001387366.2| DNA-dependent RNA polymerase II [Scheffersomyces stipitis CBS 6054]
 gi|149388327|gb|EAZ63343.2| DNA-dependent RNA polymerase II [Scheffersomyces stipitis CBS 6054]
          Length = 1232

 Score =  537 bits (1383), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 263/485 (54%), Positives = 332/485 (68%), Gaps = 83/485 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV++TN+ VRMDT+A++LYYP KPL TTR+                             
Sbjct: 783  MGVFLTNYSVRMDTMANILYYPQKPLATTRA----------------------------- 813

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                            ME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 814  ----------------MEHLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 857

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+FFR+Y D E ++     E FEKP+R     +++  Y+KLDDDG+IAPG+RVSG+D++I
Sbjct: 858  SLFFRTYMDLEKRQGMKALETFEKPSRSDTLRLKHGTYEKLDDDGLIAPGVRVSGEDIII 917

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  +P + +EL   T+  +KRD ST LR++E+GIVDQV+LT N DG KF K+R+R+ +
Sbjct: 918  GKTTPIPPDTEELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKVRMRTTK 977

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGT G+ YR E                                   
Sbjct: 978  IPQIGDKFASRHGQKGTIGVTYRHEDMPFTAQGIVPDLIINPHAIPSRMTVAHLIECLLS 1037

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VSS  G  GDA+PF D V  + +S LL+E+GYQ RG EVM+NGHTG+K+ AQVF GPTY
Sbjct: 1038 KVSSLSGLEGDASPFTD-VTAEAVSKLLREHGYQSRGFEVMYNGHTGKKLMAQVFFGPTY 1096

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRL+HMVDDKIH+RARGPVQ+L RQP+EGR+RDGGLRFGEMERDC I+HGAA FL+ERL
Sbjct: 1097 YQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAGFLKERL 1156

Query: 385  FEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMN 443
             E SD +R+HVC  CGL+  IAN++ N FEC+ CKNKT I Q+ +PYAAKLLFQELM+MN
Sbjct: 1157 MEASDAFRVHVCGMCGLMTVIANLKKNQFECRSCKNKTNIYQIHIPYAAKLLFQELMAMN 1216

Query: 444  IAPRL 448
            I+PR+
Sbjct: 1217 ISPRM 1221


>gi|302698289|ref|XP_003038823.1| DNA-dependent RNA polymerase II second largest subunit [Schizophyllum
            commune H4-8]
 gi|300112520|gb|EFJ03921.1| DNA-dependent RNA polymerase II second largest subunit [Schizophyllum
            commune H4-8]
          Length = 1204

 Score =  536 bits (1382), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 266/485 (54%), Positives = 330/485 (68%), Gaps = 83/485 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG+++TNF +RMDT+A++LYYP KPL TTR                              
Sbjct: 756  MGIFLTNFILRMDTMANILYYPQKPLATTR------------------------------ 785

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 786  ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 830

Query: 121  SVFFRSYKDAESKRIGDQE-EQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
            S+++R Y D E K +G    E+FEKP+R     M++  YDKL+DDG+IAPG  V+G+D++
Sbjct: 831  SIYYRGYTDMEKKSVGMMPTEEFEKPSRDNTLRMKHGTYDKLEDDGLIAPGTGVNGEDII 890

Query: 180  IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
            IGKT  +P + +EL   TK  ++RD ST L+++E+GI+DQV+LT N DG K  ++RVRS 
Sbjct: 891  IGKTAPIPPDSEELGQRTKNHTRRDVSTPLKSTESGIIDQVLLTTNEDGKKLIRVRVRST 950

Query: 240  RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
            RIPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 951  RIPQIGDKFASRHGQKGTIGITYRQEDMPFTAQGIVPDIVINPHAIPSRMTIGHLVECLL 1010

Query: 266  --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
              V++  G  GDATPF D + V+ +S  L   G+Q RG EVM++GHTGRK+ AQV+LGPT
Sbjct: 1011 SKVATLIGNEGDATPFTD-LTVEAVSKSLAAKGFQQRGLEVMYHGHTGRKLQAQVYLGPT 1069

Query: 324  YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRER 383
            YYQRLKHMVDDKIHSRARGPVQIL RQP+EGR+RDGGLRFGEMERDC ISHG A FL+ER
Sbjct: 1070 YYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGIAGFLKER 1129

Query: 384  LFEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMN 443
            LF+ SD YR+HVC+ CGL AIAN++  +FEC+ CKNKT  SQ+ +PYAAKLLFQEL +MN
Sbjct: 1130 LFDASDAYRLHVCDICGLTAIANLKKQSFECRACKNKTACSQLYIPYAAKLLFQELQAMN 1189

Query: 444  IAPRL 448
            IAPRL
Sbjct: 1190 IAPRL 1194


>gi|149244118|ref|XP_001526602.1| DNA-directed RNA polymerase II polypeptide 2 [Lodderomyces
            elongisporus NRRL YB-4239]
 gi|146448996|gb|EDK43252.1| DNA-directed RNA polymerase II polypeptide 2 [Lodderomyces
            elongisporus NRRL YB-4239]
          Length = 1238

 Score =  536 bits (1381), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 263/485 (54%), Positives = 332/485 (68%), Gaps = 83/485 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV++TN+ VRMDT+A++LYYP KPL TTR+                             
Sbjct: 789  MGVFLTNYSVRMDTMANILYYPQKPLATTRA----------------------------- 819

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                            ME+L+FRELPAG N+IVAI CY+GYNQEDS+I+N S+++RG FR
Sbjct: 820  ----------------MEHLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFR 863

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+FFRSY D E ++     E FEKP+R     +++  Y+KLDDDG+IAPG+RVSG+D++I
Sbjct: 864  SLFFRSYMDLEKRQGMKALETFEKPSRSDTLRLKHGTYEKLDDDGLIAPGVRVSGEDIII 923

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  +P + +EL   T+  +KRD ST LR++E+GIVDQV+LT N DG KF K+R+R+ +
Sbjct: 924  GKTTPIPPDTEELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKVRMRTTK 983

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGT G+ YR E                                   
Sbjct: 984  IPQIGDKFASRHGQKGTIGVTYRHEDMPFTSEGVVPDLIINPHAIPSRMTVAHLIECLLS 1043

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+  G  GDA+PF D V  + +S LL+E+GYQ RG EVM+NGHTG+K+ AQVF GPTY
Sbjct: 1044 KVSALSGLEGDASPFTD-VTAEAVSKLLREHGYQSRGFEVMYNGHTGKKLMAQVFFGPTY 1102

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRL+HMVDDKIH+RARGPVQ+L RQP+EGR+RDGGLRFGEMERDC I+HGAA FL+ERL
Sbjct: 1103 YQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAGFLKERL 1162

Query: 385  FEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMN 443
             E SD +R+HVC  CGL++ IAN++ N FEC+ CKNKT I Q+ +PYAAKLLFQELM+MN
Sbjct: 1163 MEASDAFRVHVCGVCGLMSVIANLKKNQFECRSCKNKTNIYQIHIPYAAKLLFQELMAMN 1222

Query: 444  IAPRL 448
            I PRL
Sbjct: 1223 ITPRL 1227


>gi|448519935|ref|XP_003868181.1| RNA polymerase II subunit B150 [Candida orthopsilosis Co 90-125]
 gi|380352520|emb|CCG22746.1| RNA polymerase II subunit B150 [Candida orthopsilosis]
          Length = 1228

 Score =  536 bits (1380), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 264/485 (54%), Positives = 331/485 (68%), Gaps = 83/485 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV++TN+ VRMDT+A++LYYP KPL TTR+                             
Sbjct: 779  MGVFLTNYAVRMDTMANILYYPQKPLATTRA----------------------------- 809

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                            ME+L+FRELPAG N+IVAI CY+GYNQEDS+I+N S+++RG FR
Sbjct: 810  ----------------MEHLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFR 853

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+FFRSY D E ++     E FEKP+R     +++  Y+KLDDDG+IAPG+RVSG+D++I
Sbjct: 854  SLFFRSYMDLEKRQGMKALETFEKPSRSDTLRLKHGTYEKLDDDGLIAPGVRVSGEDIII 913

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  +P + +EL   T+  +KRD ST LR++E+GIVDQV+LT N DG KF K+R+R+ +
Sbjct: 914  GKTTPIPPDTEELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKVRMRTTK 973

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            +PQIGDKFASRHGQKGT G+ YR E                                   
Sbjct: 974  VPQIGDKFASRHGQKGTIGVTYRHEDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLS 1033

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VSS  G  GDA+PF D V  + IS LL+E+GYQ RG EVM+NGHTG+K+ AQVF GPTY
Sbjct: 1034 KVSSLSGLEGDASPFTD-VTAEAISKLLREHGYQSRGFEVMYNGHTGKKLMAQVFFGPTY 1092

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRL+HMVDDKIH+RARGPVQ+L RQP+EGR+RDGGLRFGEMERDC I+HGAA FL+ERL
Sbjct: 1093 YQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAGFLKERL 1152

Query: 385  FEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMN 443
             E SD +R+HVC  CGL+  IAN++ N FEC+ CKNKT I Q+ +PYAAKLLFQELM+MN
Sbjct: 1153 MEASDAFRVHVCGSCGLMTVIANLKKNQFECRSCKNKTNIYQIHIPYAAKLLFQELMAMN 1212

Query: 444  IAPRL 448
            I PRL
Sbjct: 1213 ITPRL 1217


>gi|50303683|ref|XP_451784.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49640916|emb|CAH02177.1| KLLA0B05577p [Kluyveromyces lactis]
          Length = 1221

 Score =  536 bits (1380), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 268/486 (55%), Positives = 333/486 (68%), Gaps = 85/486 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV++TN++VRMDT+A++LYYP KPL TTR                              
Sbjct: 775  MGVFLTNYNVRMDTMANILYYPQKPLGTTR------------------------------ 804

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           +MEYL+FRELPAG N+IVAI CY+GYNQEDS+I+N S+++RG FR
Sbjct: 805  ---------------AMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFR 849

Query: 121  SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
            S+FFRSY D E KRIG    E FEKP+R     M++  YDKLDDDG+IAPG+RVSGDD++
Sbjct: 850  SLFFRSYMDQE-KRIGMSITESFEKPHRTNTLRMKHGTYDKLDDDGLIAPGVRVSGDDMI 908

Query: 180  IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
            IGKT  +P + +EL   T   SKRD ST LR++E GIVDQV++T N +G KF K+RVR+ 
Sbjct: 909  IGKTTPIPPDAEELGQRTAFHSKRDASTPLRSTENGIVDQVLITTNQEGLKFVKVRVRTT 968

Query: 240  RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
            +IPQIGDKFASRHGQKGT GI YR E                                  
Sbjct: 969  KIPQIGDKFASRHGQKGTIGITYRTEDMPFTAEGVVPDLIINPHAIPSRMTVAHLIECLL 1028

Query: 266  --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
              V++  G  GDA+PF D + V  IS LL+E+GYQ RG EVM+NGHTG+K+ AQ+F GPT
Sbjct: 1029 SKVAALSGNEGDASPFTD-ITVDGISRLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPT 1087

Query: 324  YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRER 383
            YYQRL+HMVDDKIH+RARGP+Q+L RQP+EGR+RDGGLRFGEMERDC I+HGAA FL+ER
Sbjct: 1088 YYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAAFLKER 1147

Query: 384  LFEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSM 442
            L E SD +R+H+C  CGL++ +A +++N FEC+ CKNK  I QV +PYAAKLLFQELM+M
Sbjct: 1148 LMEASDAFRVHICGICGLMSVVAKLKHNQFECRSCKNKIDIYQVHIPYAAKLLFQELMAM 1207

Query: 443  NIAPRL 448
            NIAPRL
Sbjct: 1208 NIAPRL 1213


>gi|402294651|gb|AFQ55279.1| DNA-directed RNA polymerase II [Peltigera membranacea]
          Length = 1255

 Score =  536 bits (1380), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 269/486 (55%), Positives = 336/486 (69%), Gaps = 85/486 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV++TN+  RMDT+A++LYYP KP+ TTR                              
Sbjct: 807  MGVFLTNYDQRMDTMANILYYPQKPMATTR------------------------------ 836

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 837  ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 881

Query: 121  SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
            S+F+RSY D E KRIG    EQFEKP R     +++  Y+KLDDDGI+APG+RVSG+D++
Sbjct: 882  SLFYRSYTDQE-KRIGMSIVEQFEKPMRTDTLRLKHGTYEKLDDDGIVAPGVRVSGEDMI 940

Query: 180  IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
            IGKT  +P + +EL   TK   KRD ST LR++E GIVDQV+LT N +G +F K+R+R+ 
Sbjct: 941  IGKTAPIPPDSEELGQRTKMHIKRDASTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTT 1000

Query: 240  RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
            +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 1001 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQL 1060

Query: 266  --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
              VS+ +G  GDATPF + V V  +S +L+ +GYQ RG EVM+N HTG+K+ AQVFLGPT
Sbjct: 1061 SKVSALRGFEGDATPFTE-VTVDSVSKILRAHGYQSRGFEVMYNAHTGQKLVAQVFLGPT 1119

Query: 324  YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRER 383
            YYQRL+HMVDDKIH+RARGPVQIL RQP+EGRARDGGLRFGEMERDC I+HGA+ FL+ER
Sbjct: 1120 YYQRLRHMVDDKIHARARGPVQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKER 1179

Query: 384  LFEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSM 442
            LFEVSD +R+H+C+ CGL+  +AN++ N+FEC+ CKNKT+ISQV +PYAAKLLFQEL SM
Sbjct: 1180 LFEVSDAFRVHICDICGLMTPVANLKKNSFECRPCKNKTRISQVHIPYAAKLLFQELASM 1239

Query: 443  NIAPRL 448
            NIA R+
Sbjct: 1240 NIAARM 1245


>gi|344304446|gb|EGW34678.1| DNA-dependent RNA polymerase II [Spathaspora passalidarum NRRL
            Y-27907]
          Length = 1238

 Score =  535 bits (1379), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 262/485 (54%), Positives = 333/485 (68%), Gaps = 83/485 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV++TN+ VRMDT+A++LYYP KPL TTR                              
Sbjct: 789  MGVFLTNYSVRMDTMANILYYPQKPLATTR------------------------------ 818

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SME+L+FRELPAG N+IVAI CY+GYNQEDS+I+N S+++RG FR
Sbjct: 819  ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFR 863

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+FFRSY D E ++     E FEKP+R     +++  Y+KLDDDG+IAPG+RVSG+D++I
Sbjct: 864  SLFFRSYMDLEKRQGMKALETFEKPSRSDTLRLKHGTYEKLDDDGLIAPGVRVSGEDIII 923

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  +P + +EL   T+  +KRD ST LR++E+GIVDQV+LT N DG KF K+R+R+ +
Sbjct: 924  GKTTPIPPDTEELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKVRMRTTK 983

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            +PQIGDKFASRHGQKGT G+ YR E                                   
Sbjct: 984  VPQIGDKFASRHGQKGTIGVTYRHEDMPFTAQGIVPDLIINPHAIPSRMTVAHLIECLLS 1043

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+  G  GDA+PF D V  + +S LL+E+GYQ RG EVM+NGHTG+K+ AQVF GPTY
Sbjct: 1044 KVSALSGLEGDASPFTD-VTAEAVSRLLREHGYQSRGFEVMYNGHTGKKLMAQVFFGPTY 1102

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRL+HMVDDKIH+RARGPVQ+L RQP+EGR+RDGGLRFGEMERDC I+HGAA FL+ERL
Sbjct: 1103 YQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAGFLKERL 1162

Query: 385  FEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMN 443
             E SD +R+HVC  CGL++ IAN++ N FEC+ CKNKT I Q+ +PYAAKLLFQELM+MN
Sbjct: 1163 MEASDAFRVHVCGSCGLMSVIANLKKNQFECRSCKNKTNIYQIHIPYAAKLLFQELMAMN 1222

Query: 444  IAPRL 448
            I+PR+
Sbjct: 1223 ISPRM 1227


>gi|190346609|gb|EDK38735.2| hypothetical protein PGUG_02833 [Meyerozyma guilliermondii ATCC 6260]
          Length = 1291

 Score =  535 bits (1379), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 261/485 (53%), Positives = 333/485 (68%), Gaps = 83/485 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV++TN+ VRMDT+A++LYYP KPL TTR+                             
Sbjct: 842  MGVFLTNYSVRMDTMANILYYPQKPLATTRA----------------------------- 872

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                            ME+L+FRELPAG N+IVAI CY+GYNQEDS+I+N S+++RG FR
Sbjct: 873  ----------------MEHLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFR 916

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+FFR+Y D E ++     E FEKP+R     +++  Y+KLDDDG+IAPG+RVSG+D++I
Sbjct: 917  SLFFRTYMDLEKRQGMKALETFEKPSRSDTLRLKHGTYEKLDDDGLIAPGIRVSGEDIII 976

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  +P + +EL   T+  +KRD ST LR++E+GIVDQV+LT N DG KF K+R+R+ +
Sbjct: 977  GKTTPIPPDTEELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKVRMRTTK 1036

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            +PQIGDKFASRHGQKGT G+ YR E                                   
Sbjct: 1037 VPQIGDKFASRHGQKGTVGVTYRHEDMPFTSQGIVPDLIINPHAIPSRMTVAHLIECLLS 1096

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VSS  G  GDA+PF D V  + +S LL+E+GYQ RG EVM++GHTG+K+ AQVF GPTY
Sbjct: 1097 KVSSLSGLEGDASPFTD-VTAEAVSKLLREHGYQSRGFEVMYHGHTGKKLMAQVFFGPTY 1155

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRL+HMVDDKIH+RARGPVQ+L RQP+EGR+RDGGLRFGEMERDC I+HGAA FL+ERL
Sbjct: 1156 YQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAGFLKERL 1215

Query: 385  FEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMN 443
             E SD +R+HVC  CGL++ IAN++ N FEC+ CKNKT I Q+ +PYAAKLLFQELM+MN
Sbjct: 1216 MEASDAFRVHVCGVCGLMSVIANLKKNQFECRSCKNKTNIYQIHIPYAAKLLFQELMAMN 1275

Query: 444  IAPRL 448
            I+PRL
Sbjct: 1276 ISPRL 1280


>gi|398365417|ref|NP_014794.3| Rpb2p [Saccharomyces cerevisiae S288c]
 gi|2507349|sp|P08518.2|RPB2_YEAST RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA
            polymerase II subunit 2; AltName: Full=B150; AltName:
            Full=DNA-directed RNA polymerase II 140 kDa polypeptide
 gi|14278325|pdb|1I3Q|B Chain B, Rna Polymerase Ii Crystal Form I At 3.1 A Resolution
 gi|14278336|pdb|1I50|B Chain B, Rna Polymerase Ii Crystal Form Ii At 2.8 A Resolution
 gi|14278366|pdb|1I6H|B Chain B, Rna Polymerase Ii Elongation Complex
 gi|20150714|pdb|1K83|B Chain B, Crystal Structure Of Yeast Rna Polymerase Ii Complexed With
            The Inhibitor Alpha Amanitin
 gi|30749617|pdb|1NIK|B Chain B, Wild Type Rna Polymerase Ii
 gi|30749738|pdb|1NT9|B Chain B, Complete 12-Subunit Rna Polymerase Ii
 gi|34810554|pdb|1PQV|B Chain B, Rna Polymerase Ii-Tfiis Complex
 gi|46015416|pdb|1R5U|B Chain B, Rna Polymerase Ii Tfiib Complex
 gi|46015781|pdb|1SFO|B Chain B, Rna Polymerase Ii Strand Separated Elongation Complex
 gi|56965912|pdb|1R9S|B Chain B, Rna Polymerase Ii Strand Separated Elongation Complex,
            Matched Nucleotide
 gi|56965924|pdb|1R9T|B Chain B, Rna Polymerase Ii Strand Separated Elongation Complex,
            Mismatched Nucleotide
 gi|56966108|pdb|1TWA|B Chain B, Rna Polymerase Ii Complexed With Atp
 gi|56966122|pdb|1TWC|B Chain B, Rna Polymerase Ii Complexed With Gtp
 gi|56966132|pdb|1TWF|B Chain B, Rna Polymerase Ii Complexed With Utp At 2.3 A Resolution
 gi|56966142|pdb|1TWG|B Chain B, Rna Polymerase Ii Complexed With Ctp
 gi|56966152|pdb|1TWH|B Chain B, Rna Polymerase Ii Complexed With 2'datp
 gi|58177165|pdb|1WCM|B Chain B, Complete 12-Subunit Rna Polymerase Ii At 3.8 Ang
 gi|61679445|pdb|1Y1W|B Chain B, Complete Rna Polymerase Ii Elongation Complex
 gi|61679462|pdb|1Y77|B Chain B, Complete Rna Polymerase Ii Elongation Complex With Substrate
            Analogue Gmpcpp
 gi|61679503|pdb|1Y1V|B Chain B, Refined Rna Polymerase Ii-tfiis Complex
 gi|61679516|pdb|1Y1Y|B Chain B, Rna Polymerase Ii-Tfiis-DnaRNA COMPLEX
 gi|83754244|pdb|2B63|B Chain B, Complete Rna Polymerase Ii-Rna Inhibitor Complex
 gi|110590855|pdb|2B8K|B Chain B, 12-Subunit Rna Polymerase Ii
 gi|122920062|pdb|2E2H|B Chain B, Rna Polymerase Ii Elongation Complex At 5 Mm Mg2+ With Gtp
 gi|122920077|pdb|2E2I|B Chain B, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
            Dgtp
 gi|122920092|pdb|2E2J|B Chain B, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With
            Gmpcpp
 gi|122921031|pdb|2NVQ|B Chain B, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
            2'dutp
 gi|122921067|pdb|2NVT|B Chain B, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
            Gmpcpp
 gi|122921083|pdb|2NVX|B Chain B, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
            Dutp
 gi|122921098|pdb|2NVY|B Chain B, Rna Polymerase Ii Form Ii In 150 Mm Mn+2
 gi|122921110|pdb|2NVZ|B Chain B, Rna Polymerase Ii Elongation Complex With Utp, Updated
            112006
 gi|134104675|pdb|2JA5|B Chain B, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex A
 gi|134104690|pdb|2JA6|B Chain B, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex B
 gi|134104711|pdb|2JA7|B Chain B, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex C
 gi|134104723|pdb|2JA7|N Chain N, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex C
 gi|134104735|pdb|2JA8|B Chain B, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex D
 gi|146387185|pdb|2YU9|B Chain B, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With Utp
 gi|160877774|pdb|2R7Z|B Chain B, Cisplatin Lesion Containing Rna Polymerase Ii Elongation
            Complex
 gi|161172228|pdb|2R92|B Chain B, Elongation Complex Of Rna Polymerase Ii With Artificial Rdrp
            Scaffold
 gi|161172241|pdb|2R93|B Chain B, Elongation Complex Of Rna Polymerase Ii With A Hepatitis
            Delta Virus-Derived Rna Stem Loop
 gi|190613463|pdb|2VUM|B Chain B, Alpha-Amanitin Inhibited Complete Rna Polymerase Ii
            Elongation Complex
 gi|194368735|pdb|3CQZ|B Chain B, Crystal Structure Of 10 Subunit Rna Polymerase Ii In Complex
            With The Inhibitor Alpha-Amanitin
 gi|224983591|pdb|3FKI|B Chain B, 12-Subunit Rna Polymerase Ii Refined With Zn-Sad Data
 gi|239781917|pdb|3GTG|B Chain B, Backtracked Rna Polymerase Ii Complex With 12mer Rna
 gi|239781930|pdb|3GTJ|B Chain B, Backtracked Rna Polymerase Ii Complex With 13mer Rna
 gi|239781943|pdb|3GTK|B Chain B, Backtracked Rna Polymerase Ii Complex With 18mer Rna
 gi|239781956|pdb|3GTL|B Chain B, Backtracked Rna Polymerase Ii Complex With 13mer With G<>u
            Mismatch
 gi|239781969|pdb|3GTM|B Chain B, Co-Complex Of Backtracked Rna Polymerase Ii With Tfiis
 gi|239781983|pdb|3GTO|B Chain B, Backtracked Rna Polymerase Ii Complex With 15mer Rna
 gi|239781996|pdb|3GTP|B Chain B, Backtracked Rna Polymerase Ii Complex With 24mer Rna
 gi|239782009|pdb|3GTQ|B Chain B, Backtracked Rna Polymerase Ii Complex Induced By Damage
 gi|240104512|pdb|3H3V|C Chain C, Yeast Rnap Ii Containing Poly(A)-Signal Sequence In The
            Active Site
 gi|254839442|pdb|3HOU|B Chain B, Complete Rna Polymerase Ii Elongation Complex I With A T-U
            Mismatch
 gi|254839457|pdb|3HOU|N Chain N, Complete Rna Polymerase Ii Elongation Complex I With A T-U
            Mismatch
 gi|254839472|pdb|3HOV|B Chain B, Complete Rna Polymerase Ii Elongation Complex Ii
 gi|254839487|pdb|3HOW|B Chain B, Complete Rna Polymerase Ii Elongation Complex Iii With A T-U
            Mismatch And A Frayed Rna 3'-Uridine
 gi|254839502|pdb|3HOX|B Chain B, Complete Rna Polymerase Ii Elongation Complex V
 gi|254839517|pdb|3HOY|B Chain B, Complete Rna Polymerase Ii Elongation Complex Vi
 gi|254839532|pdb|3HOZ|B Chain B, Complete Rna Polymerase Ii Elongation Complex Iv With A T-U
            Mismatch And A Frayed Rna 3'-Guanine
 gi|257471947|pdb|3I4M|B Chain B, 8-oxoguanine Containing Rna Polymerase Ii Elongation Complex
            D
 gi|257471962|pdb|3I4N|B Chain B, 8-oxoguanine Containing Rna Polymerase Ii Elongation Complex
            E
 gi|266618766|pdb|3K1F|B Chain B, Crystal Structure Of Rna Polymerase Ii In Complex With Tfiib
 gi|269914553|pdb|3K7A|B Chain B, Crystal Structure Of An Rna Polymerase Ii-Tfiib Complex
 gi|295982476|pdb|3M3Y|B Chain B, Rna Polymerase Ii Elongation Complex C
 gi|295982489|pdb|3M4O|B Chain B, Rna Polymerase Ii Elongation Complex B
 gi|325053964|pdb|3PO2|B Chain B, Arrested Rna Polymerase Ii Elongation Complex
 gi|325053979|pdb|3PO3|B Chain B, Arrested Rna Polymerase Ii Reactivation Intermediate
 gi|326634539|pdb|3QT1|B Chain B, Rna Polymerase Ii Variant Containing A Chimeric Rpb9-C11
            Subunit
 gi|343197457|pdb|3RZD|B Chain B, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
 gi|343197469|pdb|3RZO|B Chain B, Rna Polymerase Ii Initiation Complex With A 4-Nt Rna
 gi|343197481|pdb|3S14|B Chain B, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
 gi|343197493|pdb|3S15|B Chain B, Rna Polymerase Ii Initiation Complex With A 7-Nt Rna
 gi|343197505|pdb|3S16|B Chain B, Rna Polymerase Ii Initiation Complex With An 8-Nt Rna
 gi|343197517|pdb|3S17|B Chain B, Rna Polymerase Ii Initiation Complex With A 9-Nt Rna
 gi|343197529|pdb|3S1M|B Chain B, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
            (Variant 1)
 gi|343197541|pdb|3S1N|B Chain B, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
            (Variant 2)
 gi|343197553|pdb|3S1Q|B Chain B, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
            Rna Soaked With Atp
 gi|343197565|pdb|3S1R|B Chain B, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
            Rna Soaked With Gtp
 gi|343197577|pdb|3S2D|B Chain B, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
            Containing A 5br- U
 gi|343781198|pdb|3S2H|B Chain B, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
            Containing A 2[prime]-Iodo Atp
 gi|353251634|pdb|3J0K|B Chain B, Orientation Of Rna Polymerase Ii Within The Human
            Vp16-Mediator-Pol Ii-Tfiif Assembly
 gi|357380837|pdb|4A3C|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
            Dna-Rna Hybrid
 gi|359546291|pdb|4A3B|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
            Dna-Rna Hybrid
 gi|359546309|pdb|4A3D|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
            Dna-Rna Hybrid
 gi|359546326|pdb|4A3E|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
            Dna-Rna Hybrid And Soaked With Ampcpp
 gi|359546343|pdb|4A3F|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
            Dna-Rna Hybrid And Soaked With Ampcpp
 gi|359546360|pdb|4A3J|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
            Dna-Rna Hybrid And Soaked With Gmpcpp
 gi|359546377|pdb|4A3K|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
            Dna-Rna Hybrid
 gi|359546393|pdb|4A3L|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
            Dna-Rna Hybrid And Soaked With Ampcpp
 gi|359546410|pdb|4A3M|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
            Dna-Rna Hybrid And Soaked With Ampcpp
 gi|374977880|pdb|4A3G|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
            Dna-Rna Hybrid
 gi|374977895|pdb|4A3I|B Chain B, Rna Polymerase Ii Binary Complex With Dna
 gi|380764980|pdb|4A93|B Chain B, Rna Polymerase Ii Elongation Complex Containing A Cpd Lesion
 gi|414145447|pdb|4BBR|B Chain B, Structure Of Rna Polymerase Ii-tfiib Complex
 gi|414145460|pdb|4BBS|B Chain B, Structure Of An Initially Transcribing Rna Polymerase Ii-
            Tfiib Complex
 gi|1293711|gb|AAC49637.1| Rpb2p polymerase [Saccharomyces cerevisiae]
 gi|1420379|emb|CAA99357.1| RPB2 [Saccharomyces cerevisiae]
 gi|151945769|gb|EDN64010.1| RNA polymerase B [Saccharomyces cerevisiae YJM789]
 gi|256272775|gb|EEU07746.1| Rpb2p [Saccharomyces cerevisiae JAY291]
 gi|259149634|emb|CAY86438.1| Rpb2p [Saccharomyces cerevisiae EC1118]
 gi|285815031|tpg|DAA10924.1| TPA: Rpb2p [Saccharomyces cerevisiae S288c]
 gi|349581308|dbj|GAA26466.1| K7_Rpb2p [Saccharomyces cerevisiae Kyokai no. 7]
 gi|392296478|gb|EIW07580.1| Rpb2p [Saccharomyces cerevisiae CEN.PK113-7D]
          Length = 1224

 Score =  535 bits (1379), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 266/485 (54%), Positives = 328/485 (67%), Gaps = 83/485 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV++TN++VRMDT+A++LYYP KPL TTR                              
Sbjct: 778  MGVFLTNYNVRMDTMANILYYPQKPLGTTR------------------------------ 807

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           +MEYL+FRELPAG N+IVAI CY+GYNQEDS+I+N S+++RG FR
Sbjct: 808  ---------------AMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFR 852

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+FFRSY D E K      E FEKP R     M++  YDKLDDDG+IAPG+RVSG+DV+I
Sbjct: 853  SLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLIAPGVRVSGEDVII 912

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  +  +E+EL   T   SKRD ST LR++E GIVDQV++T N DG KF K+RVR+ +
Sbjct: 913  GKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLVTTNQDGLKFVKVRVRTTK 972

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGT GI YR+E                                   
Sbjct: 973  IPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLS 1032

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             V++  G  GDA+PF D + V+ IS LL+E+GYQ RG EVM+NGHTG+K+ AQ+F GPTY
Sbjct: 1033 KVAALSGNEGDASPFTD-ITVEGISKLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTY 1091

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRL+HMVDDKIH+RARGP+Q+L RQP+EGR+RDGGLRFGEMERDC I+HGAA FL+ERL
Sbjct: 1092 YQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAASFLKERL 1151

Query: 385  FEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMN 443
             E SD +R+H+C  CGL+  IA + +N FECKGC NK  I Q+ +PYAAKLLFQELM+MN
Sbjct: 1152 MEASDAFRVHICGICGLMTVIAKLNHNQFECKGCDNKIDIYQIHIPYAAKLLFQELMAMN 1211

Query: 444  IAPRL 448
            I PRL
Sbjct: 1212 ITPRL 1216


>gi|407925273|gb|EKG18288.1| DNA-directed RNA polymerase subunit 2 domain 6 [Macrophomina
            phaseolina MS6]
          Length = 1258

 Score =  535 bits (1379), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 269/489 (55%), Positives = 330/489 (67%), Gaps = 87/489 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV +TN+ +RMDT+ +VLYYP KPL TTR                              
Sbjct: 805  MGVCLTNYELRMDTMVNVLYYPQKPLATTR------------------------------ 834

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 835  ---------------SMEYLRFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 879

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+F+RSY D E K      EQFEKP R     +++  YDKLDDDG++APG+RVSG+D++I
Sbjct: 880  SLFYRSYTDQEKKVGMAVVEQFEKPMRSDTMRLKHGTYDKLDDDGVVAPGVRVSGEDIII 939

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  +  + +EL   TK   KRD ST LR++E GIVDQV+LT N DG KF K+R R+ +
Sbjct: 940  GKTAPIAPDAEELGQRTKMHIKRDVSTPLRSTENGIVDQVLLTTNSDGLKFVKVRTRTTK 999

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            +PQIGDKFASRHGQKGT GI YR E                                   
Sbjct: 1000 VPQIGDKFASRHGQKGTIGITYRHEDMPFTREGLTPDLIINPHAIPSRMTIAHLIECLLS 1059

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             V + +G+ GDATPF D V V ++S+LL+E+GYQ RG E+M+NGHTG+K+ AQVFLGPTY
Sbjct: 1060 KVGALRGQEGDATPFTD-VTVTQVSSLLREHGYQSRGFEIMYNGHTGKKLTAQVFLGPTY 1118

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRL+HMVDDKIH+RARGPVQIL RQP+EGRARDGGLRFGEMERDC ISHGA+ FL+ERL
Sbjct: 1119 YQRLRHMVDDKIHARARGPVQILTRQPVEGRARDGGLRFGEMERDCMISHGASAFLKERL 1178

Query: 385  FEVSDPYRIHVCNFCGLIAI-----ANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQEL 439
            FEVSD YR+H+C  CGL+       +N++ N FEC+ CKNKT+I+Q+ +PYAAKLLFQEL
Sbjct: 1179 FEVSDAYRVHICEICGLMTPIACPRSNLKRNQFECRPCKNKTKIAQIYIPYAAKLLFQEL 1238

Query: 440  MSMNIAPRL 448
             SMNIA R+
Sbjct: 1239 ASMNIASRM 1247


>gi|172211|gb|AAA68096.1| RNA polymerase II 48 kd subunit [Saccharomyces cerevisiae]
          Length = 1224

 Score =  535 bits (1379), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 266/485 (54%), Positives = 328/485 (67%), Gaps = 83/485 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV++TN++VRMDT+A++LYYP KPL TTR                              
Sbjct: 778  MGVFLTNYNVRMDTMANILYYPQKPLGTTR------------------------------ 807

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           +MEYL+FRELPAG N+IVAI CY+GYNQEDS+I+N S+++RG FR
Sbjct: 808  ---------------AMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFR 852

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+FFRSY D E K      E FEKP R     M++  YDKLDDDG+IAPG+RVSG+DV+I
Sbjct: 853  SLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLIAPGVRVSGEDVII 912

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  +  +E+EL   T   SKRD ST LR++E GIVDQV++T N DG KF K+RVR+ +
Sbjct: 913  GKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLVTTNQDGLKFVKVRVRTTK 972

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGT GI YR+E                                   
Sbjct: 973  IPQIGDKFASRHGQKGTIGITYRREDMPFTRRRYVPDLIINPHAIPSRMTVAHLIECLLS 1032

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             V++  G  GDA+PF D + V+ IS LL+E+GYQ RG EVM+NGHTG+K+ AQ+F GPTY
Sbjct: 1033 KVAALSGNEGDASPFTD-ITVEGISKLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTY 1091

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRL+HMVDDKIH+RARGP+Q+L RQP+EGR+RDGGLRFGEMERDC I+HGAA FL+ERL
Sbjct: 1092 YQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAASFLKERL 1151

Query: 385  FEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMN 443
             E SD +R+H+C  CGL+  IA + +N FECKGC NK  I Q+ +PYAAKLLFQELM+MN
Sbjct: 1152 MEASDAFRVHICGICGLMTVIAKLNHNQFECKGCDNKIDIYQIHIPYAAKLLFQELMAMN 1211

Query: 444  IAPRL 448
            I PRL
Sbjct: 1212 ITPRL 1216


>gi|223590257|sp|A5DHT2.3|RPB2_PICGU RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA
            polymerase II subunit 2; Short=RNA polymerase II subunit
            B2
          Length = 1236

 Score =  535 bits (1378), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 261/485 (53%), Positives = 333/485 (68%), Gaps = 83/485 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV++TN+ VRMDT+A++LYYP KPL TTR+                             
Sbjct: 787  MGVFLTNYSVRMDTMANILYYPQKPLATTRA----------------------------- 817

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                            ME+L+FRELPAG N+IVAI CY+GYNQEDS+I+N S+++RG FR
Sbjct: 818  ----------------MEHLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFR 861

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+FFR+Y D E ++     E FEKP+R     +++  Y+KLDDDG+IAPG+RVSG+D++I
Sbjct: 862  SLFFRTYMDLEKRQGMKALETFEKPSRSDTLRLKHGTYEKLDDDGLIAPGIRVSGEDIII 921

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  +P + +EL   T+  +KRD ST LR++E+GIVDQV+LT N DG KF K+R+R+ +
Sbjct: 922  GKTTPIPPDTEELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKVRMRTTK 981

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            +PQIGDKFASRHGQKGT G+ YR E                                   
Sbjct: 982  VPQIGDKFASRHGQKGTVGVTYRHEDMPFTSQGIVPDLIINPHAIPSRMTVAHLIECLLS 1041

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VSS  G  GDA+PF D V  + +S LL+E+GYQ RG EVM++GHTG+K+ AQVF GPTY
Sbjct: 1042 KVSSLSGLEGDASPFTD-VTAEAVSKLLREHGYQSRGFEVMYHGHTGKKLMAQVFFGPTY 1100

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRL+HMVDDKIH+RARGPVQ+L RQP+EGR+RDGGLRFGEMERDC I+HGAA FL+ERL
Sbjct: 1101 YQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAGFLKERL 1160

Query: 385  FEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMN 443
             E SD +R+HVC  CGL++ IAN++ N FEC+ CKNKT I Q+ +PYAAKLLFQELM+MN
Sbjct: 1161 MEASDAFRVHVCGVCGLMSVIANLKKNQFECRSCKNKTNIYQIHIPYAAKLLFQELMAMN 1220

Query: 444  IAPRL 448
            I+PRL
Sbjct: 1221 ISPRL 1225


>gi|365758370|gb|EHN00218.1| Rpb2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
          Length = 1224

 Score =  535 bits (1377), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 265/485 (54%), Positives = 328/485 (67%), Gaps = 83/485 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV++TN++VRMDT+A++LYYP KPL TTR                              
Sbjct: 778  MGVFLTNYNVRMDTMANILYYPQKPLGTTR------------------------------ 807

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           +MEYL+FRELPAG N+IVAI CY+GYNQEDS+I+N S+++RG FR
Sbjct: 808  ---------------AMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFR 852

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+FFRSY D E K      E FEKP R     M++  YDKLDDDG+IAPG+RVSG+DV+I
Sbjct: 853  SLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLIAPGVRVSGEDVII 912

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  +  +E+EL   T   SKRD ST LR++E GIVDQV++T N DG KF K+RVR+ +
Sbjct: 913  GKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLVTTNQDGLKFVKVRVRTTK 972

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            +PQIGDKFASRHGQKGT GI YR+E                                   
Sbjct: 973  VPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLS 1032

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             V++  G  GDA+PF D + V+ IS LL+E+GYQ RG EVM+NGHTG+K+ AQ+F GPTY
Sbjct: 1033 KVAALSGNEGDASPFTD-ITVEGISKLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTY 1091

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRL+HMVDDKIH+RARGP+Q+L RQP+EGR+RDGGLRFGEMERDC I+HGAA FL+ERL
Sbjct: 1092 YQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAASFLKERL 1151

Query: 385  FEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMN 443
             E SD +R+H+C  CGL+  IA + +N FECKGC NK  I Q+ +PYAAKLLFQELM+MN
Sbjct: 1152 MEASDAFRVHICGICGLMTVIAKLNHNQFECKGCDNKIDIYQIHIPYAAKLLFQELMAMN 1211

Query: 444  IAPRL 448
            I PRL
Sbjct: 1212 ITPRL 1216


>gi|402294653|gb|AFQ55280.1| DNA-directed RNA polymerase II [Peltigera malacea]
          Length = 1255

 Score =  535 bits (1377), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 269/486 (55%), Positives = 335/486 (68%), Gaps = 85/486 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV++TN+  RMDT+A++LYYP KP+ TTR                              
Sbjct: 807  MGVFLTNYDQRMDTMANILYYPQKPMATTR------------------------------ 836

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 837  ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 881

Query: 121  SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
            S+F+RSY D E KRIG    EQFEKP R     +++  Y+KLDDDGI+APG+RVSG+D++
Sbjct: 882  SLFYRSYTDQE-KRIGMSIVEQFEKPMRTDTLRLKHGTYEKLDDDGIVAPGVRVSGEDMI 940

Query: 180  IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
            IGKT  +P + +EL   TK   KRD ST LR++E GIVDQV+LT N +G +F K+R+R+ 
Sbjct: 941  IGKTAPIPPDSEELGQRTKLHVKRDASTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTT 1000

Query: 240  RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
            +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 1001 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQL 1060

Query: 266  --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
              VS+ +G  GDATPF + V V  +S +L+ +GYQ RG EVM+N HTG K+ AQVFLGPT
Sbjct: 1061 SKVSALRGFEGDATPFTE-VTVDSVSKILRAHGYQSRGFEVMYNAHTGLKLVAQVFLGPT 1119

Query: 324  YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRER 383
            YYQRL+HMVDDKIH+RARGPVQIL RQP+EGRARDGGLRFGEMERDC I+HGA+ FL+ER
Sbjct: 1120 YYQRLRHMVDDKIHARARGPVQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKER 1179

Query: 384  LFEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSM 442
            LFEVSD +R+H+C+ CGL+  +AN++ N+FEC+ CKNKT+ISQV +PYAAKLLFQEL SM
Sbjct: 1180 LFEVSDAFRVHICDICGLMTPVANLKKNSFECRPCKNKTRISQVHIPYAAKLLFQELASM 1239

Query: 443  NIAPRL 448
            NIA R+
Sbjct: 1240 NIAARM 1245


>gi|401623583|gb|EJS41677.1| rpb2p [Saccharomyces arboricola H-6]
          Length = 1224

 Score =  535 bits (1377), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 265/485 (54%), Positives = 328/485 (67%), Gaps = 83/485 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV++TN++VRMDT+A++LYYP KPL TTR                              
Sbjct: 778  MGVFLTNYNVRMDTMANILYYPQKPLGTTR------------------------------ 807

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           +MEYL+FRELPAG N+IVAI CY+GYNQEDS+I+N S+++RG FR
Sbjct: 808  ---------------AMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFR 852

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+FFRSY D E K      E FEKP R     M++  YDKLDDDG+IAPG+RVSG+DV+I
Sbjct: 853  SLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLIAPGVRVSGEDVII 912

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  +  +E+EL   T   SKRD ST LR++E GIVDQV++T N DG KF K+RVR+ +
Sbjct: 913  GKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLVTTNQDGLKFVKVRVRTTK 972

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            +PQIGDKFASRHGQKGT GI YR+E                                   
Sbjct: 973  VPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLS 1032

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             V++  G  GDA+PF D + V+ IS LL+E+GYQ RG EVM+NGHTG+K+ AQ+F GPTY
Sbjct: 1033 KVAALSGNEGDASPFTD-ITVEGISKLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTY 1091

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRL+HMVDDKIH+RARGP+Q+L RQP+EGR+RDGGLRFGEMERDC I+HGAA FL+ERL
Sbjct: 1092 YQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAASFLKERL 1151

Query: 385  FEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMN 443
             E SD +R+H+C  CGL+  IA + +N FECKGC NK  I Q+ +PYAAKLLFQELM+MN
Sbjct: 1152 MEASDAFRVHICGICGLMTVIAKLNHNQFECKGCDNKIDIYQIHIPYAAKLLFQELMAMN 1211

Query: 444  IAPRL 448
            I PRL
Sbjct: 1212 ITPRL 1216


>gi|45198922|ref|NP_985951.1| AFR404Cp [Ashbya gossypii ATCC 10895]
 gi|51701974|sp|Q753Q4.1|RPB2_ASHGO RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA
            polymerase II subunit 2; Short=RNA polymerase II subunit
            B2
 gi|44984951|gb|AAS53775.1| AFR404Cp [Ashbya gossypii ATCC 10895]
 gi|374109181|gb|AEY98087.1| FAFR404Cp [Ashbya gossypii FDAG1]
          Length = 1222

 Score =  535 bits (1377), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 266/486 (54%), Positives = 333/486 (68%), Gaps = 85/486 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV++TN++VRMDT+A++LYYP KPL TTR                              
Sbjct: 776  MGVFLTNYNVRMDTMANILYYPQKPLGTTR------------------------------ 805

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           +MEYL+FRELPAG N+IVAI CY+GYNQEDS+I+N S+++ G FR
Sbjct: 806  ---------------AMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDSGLFR 850

Query: 121  SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
            S+FFRSY D E KRIG    E FEKP+R     M++  Y+KLDDDG+IAPG+RVSGDD++
Sbjct: 851  SLFFRSYMDQE-KRIGMSITESFEKPHRTNTLRMKHGTYEKLDDDGLIAPGVRVSGDDII 909

Query: 180  IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
            IGKT  +P + +EL   T   SKRD ST LR++E GIVDQV++T N +G KF K+RVR+ 
Sbjct: 910  IGKTTPIPPDAEELGQRTAFHSKRDASTPLRSTENGIVDQVLITTNQEGLKFVKVRVRTT 969

Query: 240  RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
            ++PQIGDKFASRHGQKGT GI YR+E                                  
Sbjct: 970  KVPQIGDKFASRHGQKGTIGITYRREDMPFTAEGVVPDLIINPHAIPSRMTVAHLIECLL 1029

Query: 266  --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
              V++  G  GDA+PF D + V  IS LL+E+GYQ RG EVM+NGHTG+K+ AQ+F GPT
Sbjct: 1030 SKVAALSGNEGDASPFTD-ITVDGISKLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPT 1088

Query: 324  YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRER 383
            YYQRL+HMVDDKIH+RARGP+Q+L RQP+EGR+RDGGLRFGEMERDC I+HGAA FL+ER
Sbjct: 1089 YYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAAFLKER 1148

Query: 384  LFEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSM 442
            L E SD +R+H+C  CGL+  +A +++N FEC+GCKNK  I QV +PYAAKLLFQELM+M
Sbjct: 1149 LMEASDAFRVHICGICGLMTVVAKLKHNQFECRGCKNKIDIYQVHIPYAAKLLFQELMAM 1208

Query: 443  NIAPRL 448
            NIAPRL
Sbjct: 1209 NIAPRL 1214


>gi|365984393|ref|XP_003669029.1| hypothetical protein NDAI_0C01250 [Naumovozyma dairenensis CBS 421]
 gi|343767797|emb|CCD23786.1| hypothetical protein NDAI_0C01250 [Naumovozyma dairenensis CBS 421]
          Length = 1227

 Score =  535 bits (1377), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 266/485 (54%), Positives = 329/485 (67%), Gaps = 83/485 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV++TN++VRMDT+A++LYYP KPL TTR                              
Sbjct: 781  MGVFLTNYNVRMDTMANILYYPQKPLGTTR------------------------------ 810

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           +MEYL+FRELPAG N+IVAI CY+GYNQEDS+I+N S+++RG FR
Sbjct: 811  ---------------AMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFR 855

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+FFRSY D E K      E FEKP R     M++  YDKLDDDG+IAPG+RVSG+DV+I
Sbjct: 856  SLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLIAPGVRVSGEDVII 915

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  +  +E+EL   T   SKRD ST LR++E GIVDQV++T N DG KF K+RVR+ +
Sbjct: 916  GKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLITTNQDGLKFVKVRVRTTK 975

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            +PQIGDKFASRHGQKGT GI YR+E                                   
Sbjct: 976  VPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLS 1035

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             V++  G  GDA+PF D + V+ IS LL+E+GYQ RG EVM+NGHTG+K+ AQ+F GPTY
Sbjct: 1036 KVAALSGNEGDASPFTD-ITVEGISRLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTY 1094

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRL+HMVDDKIH+RARGP+Q+L RQP+EGR+RDGGLRFGEMERDC I+HGAA FL+ERL
Sbjct: 1095 YQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAASFLKERL 1154

Query: 385  FEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMN 443
             E SD +R+HVC  CGL++ IA + +N FECKGC NK  I Q+ +PYAAKLLFQELM+MN
Sbjct: 1155 MEASDAFRVHVCGNCGLMSVIAKLNHNQFECKGCDNKIDIYQIHIPYAAKLLFQELMAMN 1214

Query: 444  IAPRL 448
            I PRL
Sbjct: 1215 ITPRL 1219


>gi|366996268|ref|XP_003677897.1| hypothetical protein NCAS_0H02400 [Naumovozyma castellii CBS 4309]
 gi|342303767|emb|CCC71550.1| hypothetical protein NCAS_0H02400 [Naumovozyma castellii CBS 4309]
          Length = 1224

 Score =  534 bits (1376), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 265/485 (54%), Positives = 329/485 (67%), Gaps = 83/485 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV++TN++VRMDT+A++LYYP KPL TTR                              
Sbjct: 778  MGVFLTNYNVRMDTMANILYYPQKPLGTTR------------------------------ 807

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYL+FRELPAG N+IVAI CY+GYNQEDS+I+N S+++RG FR
Sbjct: 808  ---------------SMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFR 852

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+FFRSY D E K      E FEKP R     M++  YDKLDDDG+IAPG+RVSG+D++I
Sbjct: 853  SLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLIAPGVRVSGEDIII 912

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  +  +E+EL   T   SKRD ST LR++E GIVDQV++T N DG KF K+RVR+ +
Sbjct: 913  GKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLITTNQDGLKFVKVRVRTTK 972

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            +PQIGDKFASRHGQKGT GI YR+E                                   
Sbjct: 973  VPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLS 1032

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             V++  G  GDA+PF D + V+ IS LL+E+GYQ RG EVM+NGHTG+K+ AQ+F GPTY
Sbjct: 1033 KVAALSGNEGDASPFTD-ITVEGISKLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTY 1091

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRL+HMVDDKIH+RARGP+Q+L RQP+EGR+RDGGLRFGEMERDC I+HGAA FL+ERL
Sbjct: 1092 YQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAAFLKERL 1151

Query: 385  FEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMN 443
             E SD +R+H+C  CGL++ IA + +N FECKGC NK  I Q+ +PYAAKLLFQELM+MN
Sbjct: 1152 MEASDAFRVHICGNCGLMSVIAKLNHNQFECKGCDNKIDIYQIHIPYAAKLLFQELMAMN 1211

Query: 444  IAPRL 448
            I PRL
Sbjct: 1212 ITPRL 1216


>gi|350539902|ref|NP_001234825.1| RNA polymerase II second largest subunit [Solanum lycopersicum]
 gi|68300807|gb|AAY89345.1| RNA polymerase II second largest subunit [Solanum lycopersicum]
          Length = 1205

 Score =  534 bits (1376), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 269/486 (55%), Positives = 327/486 (67%), Gaps = 84/486 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG+Y+TN+  RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 759  MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA----------------------------- 789

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                            ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 790  ----------------MEHLHFRQLPAGINAIVAITCYSGYNQEDSVIMNQSSIDRGLFR 833

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+FFRSY+D E K     +E F +P+R+   GMR+  YDKL+DDG   PG RVSGDDV+I
Sbjct: 834  SLFFRSYRDEEKKMGTLVKEDFGRPDREHTMGMRHGNYDKLEDDGFAPPGTRVSGDDVII 893

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT   P ++DE +G + R++++D ST LR+SETGIVDQV+LT N DG +F KIR+RSVR
Sbjct: 894  GKTT--PISQDEAQGQSARYTRKDHSTSLRHSETGIVDQVLLTTNADGLRFVKIRMRSVR 951

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 952  IPQIGDKFSSRHGQKGTIGMTYTQEDMPWSAEGITPDIIVNPHAIPSRMTIGQLVECIMG 1011

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             V+++ G+ GDATPF D V V  IS  L   GYQ+RG E M+NGHTGR + A +FLGPTY
Sbjct: 1012 KVAAHIGKEGDATPFTD-VTVDSISRTLHNCGYQMRGFERMYNGHTGRVLPAMIFLGPTY 1070

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGGLRFGEMERDC I+HGAA FL+ERL
Sbjct: 1071 YQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERL 1130

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            F+ SD YR+HVC  CGL+AIAN++  +FEC+ C+NKT   QV +PYA KLL QELMSM I
Sbjct: 1131 FDQSDAYRVHVCQQCGLMAIANLKKMSFECRSCRNKTDNVQVYIPYACKLLIQELMSMAI 1190

Query: 445  APRLMV 450
            APR++ 
Sbjct: 1191 APRMLT 1196


>gi|410079905|ref|XP_003957533.1| hypothetical protein KAFR_0E02450 [Kazachstania africana CBS 2517]
 gi|372464119|emb|CCF58398.1| hypothetical protein KAFR_0E02450 [Kazachstania africana CBS 2517]
          Length = 1222

 Score =  534 bits (1375), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 264/487 (54%), Positives = 329/487 (67%), Gaps = 83/487 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV++TNF+VRMDT+A++LYYP KPL TTR                              
Sbjct: 776  MGVFLTNFNVRMDTMANILYYPQKPLGTTR------------------------------ 805

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           +MEYL+FRELPAG N+IVAI CY+GYNQEDS+I+N S+++RG FR
Sbjct: 806  ---------------AMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFR 850

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+FFRSY D E K      E FEKP+R     M++  YDKLDDDG+IAPG+RVSG+D++I
Sbjct: 851  SLFFRSYMDQEKKYGMSITETFEKPHRTNTLRMKHGTYDKLDDDGLIAPGVRVSGEDIII 910

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  +  +E+EL   T   SKRD ST LR++E GIVDQV++T N DG KF K+RVR+ +
Sbjct: 911  GKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLITTNQDGLKFVKVRVRTTK 970

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            +PQIGDKFASRHGQKGT GI YR+E                                   
Sbjct: 971  VPQIGDKFASRHGQKGTIGITYRREDMPFTADGIVPDLIINPHAIPSRMTVAHLIECLLS 1030

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             V++  G  GDA+PF D + V+ IS LL+E+GY  RG EVM+NGHTG+K+ AQ+F GPTY
Sbjct: 1031 KVAALSGNEGDASPFTD-ITVEGISKLLREHGYHSRGFEVMYNGHTGKKLMAQIFFGPTY 1089

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRL+HMVDDKIH+RARGP+Q+L RQP+EGR+RDGGLRFGEMERDC I+HGAA FL+ERL
Sbjct: 1090 YQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAAFLKERL 1149

Query: 385  FEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMN 443
             E SD +R+H+C  CGL++ IA + +N FECKGC NK  I Q+ +PYAAKLLFQELM+MN
Sbjct: 1150 MEASDAFRVHICGNCGLMSVIAKLSHNQFECKGCNNKIDIYQIHIPYAAKLLFQELMAMN 1209

Query: 444  IAPRLMV 450
            I PRL  
Sbjct: 1210 ITPRLFT 1216


>gi|406604825|emb|CCH43700.1| DNA-directed RNA polymerase II subunit [Wickerhamomyces ciferrii]
          Length = 1241

 Score =  533 bits (1374), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 267/486 (54%), Positives = 334/486 (68%), Gaps = 85/486 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV++TN+ VRMDT+A++LYYP KPL TTR+                             
Sbjct: 795  MGVFLTNYSVRMDTMANILYYPQKPLATTRA----------------------------- 825

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                            ME+L+FRELPAG N+IVAI CY+GYNQEDS+I+N S+++RG FR
Sbjct: 826  ----------------MEHLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFR 869

Query: 121  SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
            S+FFRSY D E KR+G    EQFEKPNR     +++  Y+KLDDDG+IAPG+RVSG+D++
Sbjct: 870  SLFFRSYMDQE-KRVGMTVVEQFEKPNRSNTLRLKHGTYEKLDDDGLIAPGVRVSGEDII 928

Query: 180  IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
            IGKT  +  + +EL   T   SKRD ST LR++E GIVDQV++T N +G KF K+R+R+ 
Sbjct: 929  IGKTTPIQADSEELGQRTVYHSKRDASTPLRSTENGIVDQVLITTNQEGLKFVKVRMRTT 988

Query: 240  RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
            ++PQIGDKFASRHGQKGT GI YR+E                                  
Sbjct: 989  KVPQIGDKFASRHGQKGTIGITYRREDMPFTREGIVPDLIINPHAIPSRMTVAHLIECLL 1048

Query: 266  --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
              VS+  G  GDA+PF D V V  IS LL+E+GYQ RG EVM+NGHTG+K+ AQ+F GPT
Sbjct: 1049 SKVSALSGLEGDASPFTD-VTVDAISKLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPT 1107

Query: 324  YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRER 383
            YYQRL+HMVDDKIH+RARGPVQIL RQP+EGR+RDGGLRFGEMERDC I+HGAA F++ER
Sbjct: 1108 YYQRLRHMVDDKIHARARGPVQILTRQPVEGRSRDGGLRFGEMERDCMIAHGAAAFMKER 1167

Query: 384  LFEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSM 442
            L E SD +R+HVC  CGL++ IA +++N FEC+GCKNK  I Q+ +PYAAKLLFQELM+M
Sbjct: 1168 LMEASDAFRVHVCGVCGLMSVIAKLKHNQFECRGCKNKIDIYQIHIPYAAKLLFQELMAM 1227

Query: 443  NIAPRL 448
            NIAPRL
Sbjct: 1228 NIAPRL 1233


>gi|146418277|ref|XP_001485104.1| hypothetical protein PGUG_02833 [Meyerozyma guilliermondii ATCC 6260]
          Length = 1291

 Score =  533 bits (1374), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 261/485 (53%), Positives = 332/485 (68%), Gaps = 83/485 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV++TN+ VRMDT+A++LYYP KPL TTR+                             
Sbjct: 842  MGVFLTNYSVRMDTMANILYYPQKPLATTRA----------------------------- 872

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                            ME+L+FRELPAG N+IVAI CY+GYNQEDS+I+N S+++RG FR
Sbjct: 873  ----------------MEHLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFR 916

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+FFR+Y D E ++     E FEKP R     +++  Y+KLDDDG+IAPG+RVSG+D++I
Sbjct: 917  SLFFRTYMDLEKRQGMKALETFEKPLRSDTLRLKHGTYEKLDDDGLIAPGIRVSGEDIII 976

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  +P + +EL   T+  +KRD ST LR++E+GIVDQV+LT N DG KF K+R+R+ +
Sbjct: 977  GKTTPIPPDTEELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKVRMRTTK 1036

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            +PQIGDKFASRHGQKGT G+ YR E                                   
Sbjct: 1037 VPQIGDKFASRHGQKGTVGVTYRHEDMPFTSQGIVPDLIINPHAIPSRMTVAHLIECLLS 1096

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VSS  G  GDA+PF D V  + +S LL+E+GYQ RG EVM++GHTG+K+ AQVF GPTY
Sbjct: 1097 KVSSLSGLEGDASPFTD-VTAEAVSKLLREHGYQSRGFEVMYHGHTGKKLMAQVFFGPTY 1155

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRL+HMVDDKIH+RARGPVQ+L RQP+EGR+RDGGLRFGEMERDC I+HGAA FL+ERL
Sbjct: 1156 YQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAGFLKERL 1215

Query: 385  FEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMN 443
             E SD +R+HVC  CGL++ IAN++ N FEC+ CKNKT I Q+ +PYAAKLLFQELM+MN
Sbjct: 1216 MEASDAFRVHVCGVCGLMSVIANLKKNQFECRSCKNKTNIYQIHIPYAAKLLFQELMAMN 1275

Query: 444  IAPRL 448
            I+PRL
Sbjct: 1276 ISPRL 1280


>gi|254567802|ref|XP_002491011.1| RNA polymerase II second largest subunit B150, part of central core
            [Komagataella pastoris GS115]
 gi|238030808|emb|CAY68731.1| RNA polymerase II second largest subunit B150, part of central core
            [Komagataella pastoris GS115]
 gi|328352458|emb|CCA38857.1| DNA-directed RNA polymerase III subunit C2 [Komagataella pastoris CBS
            7435]
          Length = 1227

 Score =  533 bits (1374), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 266/486 (54%), Positives = 333/486 (68%), Gaps = 85/486 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV++TN++VRMDT+A++LYYP KPL  T++M                            
Sbjct: 778  MGVFLTNYNVRMDTMANILYYPQKPLAKTQAM---------------------------- 809

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                             EYL+FRELPAG N+IVAI CY+GYNQEDS+I+N S+++RG FR
Sbjct: 810  -----------------EYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFR 852

Query: 121  SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
            S+FFRSY D E KR G    E+FEKP R T   +++  Y+KLD+DG+IAPG+RVSGDD++
Sbjct: 853  SLFFRSYMDQE-KRFGISIVEEFEKPTRATTLRLKHGTYEKLDEDGLIAPGVRVSGDDII 911

Query: 180  IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
            IGKT  +P + +EL   TK  +KRD ST LR++E GIVDQV+LT N +G KF K+R+R+ 
Sbjct: 912  IGKTTPIPPDTEELGQRTKYHTKRDASTPLRSTENGIVDQVLLTTNQEGLKFVKVRMRTT 971

Query: 240  RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
            ++PQIGDKFASRHGQKGT G+ YR E                                  
Sbjct: 972  KVPQIGDKFASRHGQKGTIGVTYRHEDMPFSAEGIVPDLIINPHAIPSRMTVAHLIECLL 1031

Query: 266  --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
              V S +G  GDATPF D + V  +S LL++ GYQ RG EVM+NGHTG+K+ AQVF GPT
Sbjct: 1032 SKVGSIRGYEGDATPFTD-LTVDAVSNLLRDNGYQSRGFEVMYNGHTGKKLMAQVFFGPT 1090

Query: 324  YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRER 383
            YYQRL+HMVDDKIH+RARGPVQ+L RQP+EGR+RDGGLRFGEMERDC I+HGAA FL+ER
Sbjct: 1091 YYQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAGFLKER 1150

Query: 384  LFEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSM 442
            L E SD +R+HVC  CGL++ IAN++ N FEC+ CKNKT I Q+ +PYAAKLLFQELM+M
Sbjct: 1151 LMEASDAFRVHVCGICGLMSVIANLKKNQFECRSCKNKTNIYQLHIPYAAKLLFQELMAM 1210

Query: 443  NIAPRL 448
            NIAPRL
Sbjct: 1211 NIAPRL 1216


>gi|50549809|ref|XP_502376.1| YALI0D03718p [Yarrowia lipolytica]
 gi|49648244|emb|CAG80564.1| YALI0D03718p [Yarrowia lipolytica CLIB122]
          Length = 1229

 Score =  533 bits (1374), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 269/486 (55%), Positives = 332/486 (68%), Gaps = 85/486 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV++TN+ VRMDT+A++LYYP KPL TTR                              
Sbjct: 780  MGVFLTNYDVRMDTMANILYYPQKPLATTR------------------------------ 809

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SME+L+FRELPAG N+IVAILCY+GYNQEDSV++N S+++RG FR
Sbjct: 810  ---------------SMEFLKFRELPAGQNAIVAILCYSGYNQEDSVVMNQSSIDRGLFR 854

Query: 121  SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
            S+FFRSY D E +R+G    E+FEKP R     M++  YDKLDDDG++ PG+RVSG+D++
Sbjct: 855  SLFFRSYMDQE-RRVGMSVVEEFEKPTRADTLRMKHGTYDKLDDDGLVCPGVRVSGEDII 913

Query: 180  IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
            IGKT  +P + +EL   TK  +KRD ST LR++E GIVDQV+LT N +G +F K+R+R+ 
Sbjct: 914  IGKTAPIPPDAEELGQRTKYHTKRDASTPLRSTENGIVDQVLLTTNQEGLRFVKVRMRTT 973

Query: 240  RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
            +IPQIGDKFASRHGQKGT G+ YR E                                  
Sbjct: 974  KIPQIGDKFASRHGQKGTIGVTYRHEDMPFSAEGVVPDIIINPHAIPSRMTVAHLIECLL 1033

Query: 266  --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
              VS   G  GDATPF D V V  IS LL+ +GYQ RG EVM++GHTG+KI AQ FLGPT
Sbjct: 1034 SKVSCLSGLEGDATPFTD-VTVDAISKLLRSHGYQSRGFEVMYHGHTGKKIMAQCFLGPT 1092

Query: 324  YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRER 383
            YYQRL+HMVDDKIH+RARGPVQIL RQP+EGR+R+GGLRFGEMERDC I+HGAA FL+ER
Sbjct: 1093 YYQRLRHMVDDKIHARARGPVQILTRQPVEGRSREGGLRFGEMERDCMIAHGAAAFLKER 1152

Query: 384  LFEVSDPYRIHVCNFCGLI-AIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSM 442
            L E SD +RIHVC  CG +  IAN++ N FEC+ C+NKT+I QV++PYAAKLLFQELM+M
Sbjct: 1153 LMEASDAFRIHVCGVCGSMNVIANLKKNQFECRSCRNKTKIYQVQIPYAAKLLFQELMAM 1212

Query: 443  NIAPRL 448
            NIAPRL
Sbjct: 1213 NIAPRL 1218


>gi|340939429|gb|EGS20051.1| RNA polymerase-like protein [Chaetomium thermophilum var.
            thermophilum DSM 1495]
          Length = 1286

 Score =  533 bits (1373), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 273/490 (55%), Positives = 334/490 (68%), Gaps = 87/490 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG ++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 838  MGFFLTNYSHRMDTMANILYYPQKPLATTR------------------------------ 867

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SME+L+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 868  ---------------SMEFLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 912

Query: 121  SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
            S+FFRSY D E KR+G +  E FEKPNR     M+++ YDKLD DGI+APG RVSGDD++
Sbjct: 913  SLFFRSYTDCE-KRVGINIVEMFEKPNRTETLRMKHSTYDKLDADGIVAPGTRVSGDDII 971

Query: 180  IGKTITL-PENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRS 238
            IGKT  + PEN  EL   T +  KRD ST LR++E GIVD V+LT N DG ++ K+RVR+
Sbjct: 972  IGKTCPINPENA-ELGSRTAQHVKRDVSTALRSTENGIVDSVILTTNQDGMRYVKVRVRT 1030

Query: 239  VRIPQIGDKFASRHGQKGTCGIQYRQE--------------------------------- 265
             +IPQIGDKFASRHGQKGT G+ YRQE                                 
Sbjct: 1031 TKIPQIGDKFASRHGQKGTIGVTYRQEDMPFTCEGITPDIIINPHAIPSRMTIAHLIECL 1090

Query: 266  ---VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGP 322
               VS+ KG  GDATPF + V V  +S LL+E+GYQ RG E+M+NGHTGRK+ AQVF GP
Sbjct: 1091 LSKVSTLKGMEGDATPFTE-VTVDSVSALLREHGYQSRGFEIMYNGHTGRKLRAQVFFGP 1149

Query: 323  TYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRE 382
            TYYQRL+HMVDDKIH+RARGP+QI+ RQP+EGRARDGGLRFGEMERDC I+HGAA FL+E
Sbjct: 1150 TYYQRLRHMVDDKIHARARGPLQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKE 1209

Query: 383  RLFEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMS 441
            RLFEVSD +R+H+C  CGL+  IAN+   +FEC+ CKNKT+I+QV +PYAAKLLFQELM+
Sbjct: 1210 RLFEVSDAFRVHICEICGLMTPIANLTKQSFECRPCKNKTKIAQVHIPYAAKLLFQELMA 1269

Query: 442  MNIAPRLMVV 451
            MNIA R+   
Sbjct: 1270 MNIAARMFTT 1279


>gi|164660997|ref|XP_001731621.1| hypothetical protein MGL_0889 [Malassezia globosa CBS 7966]
 gi|159105522|gb|EDP44407.1| hypothetical protein MGL_0889 [Malassezia globosa CBS 7966]
          Length = 1197

 Score =  533 bits (1373), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 258/484 (53%), Positives = 333/484 (68%), Gaps = 82/484 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV++TN+ +RMDT+A++LYYP KPL TTR+                             
Sbjct: 759  MGVFLTNYQIRMDTMANILYYPQKPLATTRA----------------------------- 789

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                            ME+LRFRELPAG N+IVAILCY+GYNQEDSVI+N SA++RG FR
Sbjct: 790  ----------------MEHLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSAIDRGLFR 833

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+++R+++D E K      E+FEKP R T   +++  Y+KLD DG++ PG RVSG+D++I
Sbjct: 834  SLYYRTFQDMEKKVGVITMEEFEKPTRDTAIRLKHGTYEKLDVDGLVPPGTRVSGEDIII 893

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  LP + DEL   +K  +K+D ST ++++E+GI+DQV++T N +G KF K+RVRS R
Sbjct: 894  GKTAPLPPDSDELGMRSKMHTKKDVSTPMKSTESGIIDQVLITTNGEGAKFVKVRVRSTR 953

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            +PQ+GDKFASRHGQKGT GI YRQE                                   
Sbjct: 954  VPQVGDKFASRHGQKGTIGITYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLVECLLS 1013

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             V++  G+ GDATPF D + V+ +S +L   G+Q RG EVM+NGHTGRK+ AQV+LGPTY
Sbjct: 1014 KVATLSGQEGDATPFTD-LTVKGVSDILFSLGFQSRGLEVMYNGHTGRKLQAQVYLGPTY 1072

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQIL RQP+EGR+RDGGLRFGEMERDC ISHG A FL+ER+
Sbjct: 1073 YQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGMANFLKERM 1132

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            ++ SD YR+H+C+ CGL A+AN+R +TFEC+ C+N++ ISQ+ +PYAAKLLFQELMSM I
Sbjct: 1133 YDASDAYRLHICDLCGLTAVANLRKSTFECRACRNRSAISQIHIPYAAKLLFQELMSMGI 1192

Query: 445  APRL 448
            A RL
Sbjct: 1193 ASRL 1196


>gi|380478926|emb|CCF43324.1| DNA-directed RNA polymerase II subunit RPB2 [Colletotrichum
            higginsianum]
          Length = 1258

 Score =  533 bits (1373), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 269/486 (55%), Positives = 331/486 (68%), Gaps = 85/486 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG ++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 810  MGFFLTNYSRRMDTMANILYYPQKPLATTR------------------------------ 839

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 840  ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 884

Query: 121  SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
            S+FFRSY D E KR+G +  EQFEKP R     +++  YDKLDDDGI+APG+RVSG+D++
Sbjct: 885  SLFFRSYTDCE-KRVGINLVEQFEKPFRSDTLRLKHGTYDKLDDDGIVAPGVRVSGEDII 943

Query: 180  IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
            IGKT  +  +  EL   T +  KRD ST LR++E GIVDQV++T N DG ++ K+RVR+ 
Sbjct: 944  IGKTSPISPDNAELGQRTTQHVKRDASTPLRSTENGIVDQVIVTTNQDGLRYVKVRVRTT 1003

Query: 240  RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
            +IPQIGDKFASRHGQKGT G+ YRQE                                  
Sbjct: 1004 KIPQIGDKFASRHGQKGTIGVTYRQEDMPFTAEGITPDIIINPHAIPSRMTIAHLIECLL 1063

Query: 266  --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
              VS+ KG  GDATPF D V V  +S LL++ GYQ RG E+M+NGHTGRK+ AQVF GPT
Sbjct: 1064 SKVSTLKGMEGDATPFTD-VTVDSVSQLLRDQGYQSRGFEIMYNGHTGRKLRAQVFFGPT 1122

Query: 324  YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRER 383
            YYQRL+HMVDDKIH+RARGPVQI+ RQP+EGRARDGGLRFGEMERDC I+HGAA FL+ER
Sbjct: 1123 YYQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAASFLKER 1182

Query: 384  LFEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSM 442
            LFEVSD +R+HVC  CGL+  IAN+   +FEC+ CKNKT+I+Q+ +PYAAKLLFQEL SM
Sbjct: 1183 LFEVSDAFRVHVCEICGLMTPIANLSKQSFECRPCKNKTKIAQIHIPYAAKLLFQELQSM 1242

Query: 443  NIAPRL 448
            NIA R+
Sbjct: 1243 NIAARM 1248


>gi|310792957|gb|EFQ28418.1| RNA polymerase Rpb2 [Glomerella graminicola M1.001]
          Length = 1259

 Score =  533 bits (1372), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 269/488 (55%), Positives = 331/488 (67%), Gaps = 85/488 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG ++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 811  MGFFLTNYSRRMDTMANILYYPQKPLATTR------------------------------ 840

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 841  ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 885

Query: 121  SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
            S+FFRSY D E KR+G +  EQFEKP R     +++  YDKLDDDGI+APG+RVSG+D++
Sbjct: 886  SLFFRSYTDCE-KRVGINLVEQFEKPFRSDTLRLKHGTYDKLDDDGIVAPGVRVSGEDII 944

Query: 180  IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
            IGKT  +  +  EL   T +  KRD ST LR++E GIVDQV++T N DG ++ K+RVR+ 
Sbjct: 945  IGKTSPISPDNAELGQRTTQHVKRDASTPLRSTENGIVDQVIVTTNQDGLRYVKVRVRTT 1004

Query: 240  RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
            +IPQIGDKFASRHGQKGT G+ YRQE                                  
Sbjct: 1005 KIPQIGDKFASRHGQKGTIGVTYRQEDMPFTAEGITPDIIINPHAIPSRMTIAHLIECLL 1064

Query: 266  --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
              VS+ KG  GDATPF D V V  +S LL++ GYQ RG E+M+NGHTGRK+ AQVF GPT
Sbjct: 1065 SKVSTLKGMEGDATPFTD-VTVDSVSQLLRDQGYQSRGFEIMYNGHTGRKLRAQVFFGPT 1123

Query: 324  YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRER 383
            YYQRL+HMVDDKIH+RARGPVQI+ RQP+EGRARDGGLRFGEMERDC I+HGAA FL+ER
Sbjct: 1124 YYQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAASFLKER 1183

Query: 384  LFEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSM 442
            LFEVSD +R+HVC  CGL+  IAN+   +FEC+ CKNKT+I+Q+ +PYAAKLLFQEL SM
Sbjct: 1184 LFEVSDAFRVHVCEICGLMTPIANLSKQSFECRPCKNKTKIAQIHIPYAAKLLFQELQSM 1243

Query: 443  NIAPRLMV 450
            NIA R+  
Sbjct: 1244 NIAARMFT 1251


>gi|307103930|gb|EFN52187.1| hypothetical protein CHLNCDRAFT_59036 [Chlorella variabilis]
          Length = 1175

 Score =  532 bits (1371), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 268/486 (55%), Positives = 323/486 (66%), Gaps = 85/486 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG+Y+TN+ VRMDT  +VL+YP KPLVTTR+                             
Sbjct: 738  MGMYVTNYQVRMDTQGYVLFYPQKPLVTTRN----------------------------- 768

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                            MEYL FRELPAGIN+IVAI CY+GYNQEDS ++N S+++RG FR
Sbjct: 769  ----------------MEYLHFRELPAGINTIVAIACYSGYNQEDSTMMNQSSIDRGIFR 812

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+FFRSYK  E K+    +E  E+PNR+   G R+  YDKLDDDGI  PG RVSGDD+VI
Sbjct: 813  SIFFRSYKTEEKKQGSLVQESIERPNREITAGTRHGTYDKLDDDGIAPPGTRVSGDDIVI 872

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  +P   D+  G  +R+SK+D ST LR+SE+G++D V++T   DG +F K+RVRSVR
Sbjct: 873  GKTSPIP---DDGSGLPQRYSKKDASTALRHSESGMIDSVLVTTGADGQRFVKMRVRSVR 929

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQ+GDKFASRHGQKGT GI Y QE                                   
Sbjct: 930  IPQVGDKFASRHGQKGTIGITYTQEDMPFSAEGISPDLIINPHAIPSRMTIGHLVEALMS 989

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             V++  G+ GDATPF  +V V  IS  L   GYQ RG EVM+NGHTGR++ AQ+FL PTY
Sbjct: 990  KVAACMGKEGDATPFT-SVTVDNISAALHRCGYQSRGWEVMYNGHTGRQLQAQIFLNPTY 1048

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSR RGPVQIL RQP+EGRARDGGLRFGEMERDC ISHGAA FL+ERL
Sbjct: 1049 YQRLKHMVDDKIHSRGRGPVQILTRQPVEGRARDGGLRFGEMERDCIISHGAAAFLKERL 1108

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            ++ SD YR+HVC+ CGLIA+AN++ N F C  CKN T I QV +PYA KLLFQELM+M I
Sbjct: 1109 YDQSDAYRVHVCSVCGLIAVANLKKNQFYCTACKNTTGIVQVFIPYACKLLFQELMAMCI 1168

Query: 445  APRLMV 450
            APR++V
Sbjct: 1169 APRMIV 1174


>gi|303273466|ref|XP_003056094.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226462178|gb|EEH59470.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 1172

 Score =  532 bits (1370), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 268/489 (54%), Positives = 328/489 (67%), Gaps = 89/489 (18%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG+Y+TNF +RMDTLA+VL+YP KPLVTTR+                             
Sbjct: 734  MGMYVTNFQLRMDTLAYVLFYPQKPLVTTRA----------------------------- 764

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                            ME+L FRELPAG+N +V I+CYTGYNQEDSVI+N S+++RG FR
Sbjct: 765  ----------------MEHLHFRELPAGVNVVVGIMCYTGYNQEDSVIMNQSSIDRGLFR 808

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+F+RS+KD E K+    +E  E P+ +T  GMR+  Y KLD DG+I PG RVSG+D++I
Sbjct: 809  SIFYRSFKDEEKKQGSLTKEDLECPSPETTLGMRHGTYGKLDKDGLICPGTRVSGEDIII 868

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  LP+  D+    + RF+KRD ST ++NSETGI+DQV+LT N  G +F KIRVRS R
Sbjct: 869  GKTSPLPD--DDPSAASNRFTKRDCSTGMKNSETGIIDQVLLTTNDQGLRFVKIRVRSCR 926

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
             PQ+GDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 927  TPQVGDKFSSRHGQKGTIGMTYTQEDMPFTCEGVVPDIIVNPHAIPSRMTIGQLVECLMG 986

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             V++  G+ GDATPF   V V+ IS +L + GYQ RGNEVM+NGHTGRK+ A++FLGPTY
Sbjct: 987  KVAAMMGKEGDATPFT-PVTVENISDMLHQCGYQKRGNEVMYNGHTGRKLEAKIFLGPTY 1045

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSR RGPVQIL RQPMEGR+RDGGLRFGEMERDC ISHGAA FL+ERL
Sbjct: 1046 YQRLKHMVDDKIHSRGRGPVQILTRQPMEGRSRDGGLRFGEMERDCIISHGAAAFLKERL 1105

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQ---ISQVRLPYAAKLLFQELMS 441
             + SD YR+HVC  CGLIA+AN++N TFEC  CKN ++   + QV LPYA KLLFQELMS
Sbjct: 1106 MDQSDAYRVHVCQTCGLIAVANLKNQTFEC--CKNPSERMKVVQVLLPYACKLLFQELMS 1163

Query: 442  MNIAPRLMV 450
            M +APRL+ 
Sbjct: 1164 MAVAPRLVT 1172


>gi|367008806|ref|XP_003678904.1| hypothetical protein TDEL_0A03610 [Torulaspora delbrueckii]
 gi|359746561|emb|CCE89693.1| hypothetical protein TDEL_0A03610 [Torulaspora delbrueckii]
          Length = 1222

 Score =  532 bits (1370), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 263/485 (54%), Positives = 328/485 (67%), Gaps = 83/485 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV++TN++VRMDT+A++LYYP KPL TTR                              
Sbjct: 776  MGVFLTNYNVRMDTMANILYYPQKPLGTTR------------------------------ 805

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           +MEYL+FRELPAG N+IVAI CY+GYNQEDS+I+N S+++RG FR
Sbjct: 806  ---------------AMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFR 850

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+FFRSY D E K      E FEKP R     M++  YDKLDDDG+IAPG+RVSG+D++I
Sbjct: 851  SLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLIAPGVRVSGEDIII 910

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  +  +E+EL   T   SKRD ST LR++E GIVDQV++T N DG KF K+RVR+ +
Sbjct: 911  GKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLITTNQDGLKFVKVRVRTTK 970

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            +PQIGDKFASRHGQKGT GI Y +E                                   
Sbjct: 971  VPQIGDKFASRHGQKGTIGITYGREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLS 1030

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             V++  G  GDA+PF D + V+ IS LL+E+GYQ RG EVM+NGHTG+K+ AQ+F GPTY
Sbjct: 1031 KVAALSGNEGDASPFTD-ITVEGISKLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTY 1089

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRL+HMVDDKIH+RARGP+Q+L RQP+EGR+RDGGLRFGEMERDC I+HGAA FL+ERL
Sbjct: 1090 YQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAAFLKERL 1149

Query: 385  FEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMN 443
             E SD +R+H+C  CGL++ IA + +N FECKGC NK  I Q+ +PYAAKLLFQELM+MN
Sbjct: 1150 MEASDAFRVHICGICGLMSVIAKLNHNQFECKGCDNKIDIYQINIPYAAKLLFQELMAMN 1209

Query: 444  IAPRL 448
            I PRL
Sbjct: 1210 ITPRL 1214


>gi|261196850|ref|XP_002624828.1| DNA-directed RNA polymerase II polypeptide [Ajellomyces dermatitidis
            SLH14081]
 gi|239596073|gb|EEQ78654.1| DNA-directed RNA polymerase II polypeptide [Ajellomyces dermatitidis
            SLH14081]
          Length = 1258

 Score =  531 bits (1368), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 268/487 (55%), Positives = 333/487 (68%), Gaps = 83/487 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV++TNF  RM+T+A++LYYP KPL TTR                              
Sbjct: 810  MGVFLTNFDQRMETMANILYYPQKPLATTR------------------------------ 839

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SME+L+FRELPAG NSIVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 840  ---------------SMEFLKFRELPAGQNSIVAIACYSGYNQEDSVIMNQSSIDRGLFR 884

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+F+R+Y D+E        E+FEKP R     M++  YDK+DDDGI+APG+RVSG+D++I
Sbjct: 885  SLFYRTYTDSEKMVGMTVVERFEKPMRSDTLRMKHGTYDKVDDDGIVAPGVRVSGEDIII 944

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  L    +EL   TK+ +K D ST LR++E+GIVDQV+++ + D  KF K+R+R+ +
Sbjct: 945  GKTAPLAPEAEELGQRTKQHTKLDVSTPLRSTESGIVDQVLVSTSNDDLKFVKVRMRTTK 1004

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 1005 IPQIGDKFASRHGQKGTIGITYRQEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQLS 1064

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VSS +G  GDATPF D V V  IS+LL+E+GYQ RG EVM+NG+TGRK+ AQVFLGPTY
Sbjct: 1065 KVSSLRGFEGDATPFTD-VTVDSISSLLREHGYQSRGFEVMYNGYTGRKLVAQVFLGPTY 1123

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRL+HMVDDKIH+RARGP QIL RQP+EGRARDGGLRFGEMERDC I+HGA+ FL+ERL
Sbjct: 1124 YQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERL 1183

Query: 385  FEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMN 443
            F+VSDP+R+H+C+ CGL+  IA ++ + FEC+ CKNK +ISQV +PYAAKLLFQELMSMN
Sbjct: 1184 FDVSDPFRVHICDICGLMTPIAKLKKSDFECRACKNKNKISQVHIPYAAKLLFQELMSMN 1243

Query: 444  IAPRLMV 450
            IA RL  
Sbjct: 1244 IAARLFT 1250


>gi|239609658|gb|EEQ86645.1| DNA-directed RNA polymerase II polypeptide [Ajellomyces dermatitidis
            ER-3]
 gi|327357696|gb|EGE86553.1| DNA-directed RNA polymerase [Ajellomyces dermatitidis ATCC 18188]
          Length = 1258

 Score =  531 bits (1368), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 268/487 (55%), Positives = 333/487 (68%), Gaps = 83/487 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV++TNF  RM+T+A++LYYP KPL TTR                              
Sbjct: 810  MGVFLTNFDQRMETMANILYYPQKPLATTR------------------------------ 839

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SME+L+FRELPAG NSIVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 840  ---------------SMEFLKFRELPAGQNSIVAIACYSGYNQEDSVIMNQSSIDRGLFR 884

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+F+R+Y D+E        E+FEKP R     M++  YDK+DDDGI+APG+RVSG+D++I
Sbjct: 885  SLFYRTYTDSEKMVGMTVVERFEKPMRSDTLRMKHGTYDKVDDDGIVAPGVRVSGEDIII 944

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  L    +EL   TK+ +K D ST LR++E+GIVDQV+++ + D  KF K+R+R+ +
Sbjct: 945  GKTAPLAPEAEELGQRTKQHTKLDVSTPLRSTESGIVDQVLVSTSNDDLKFVKVRMRTTK 1004

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 1005 IPQIGDKFASRHGQKGTIGITYRQEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQLS 1064

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VSS +G  GDATPF D V V  IS+LL+E+GYQ RG EVM+NG+TGRK+ AQVFLGPTY
Sbjct: 1065 KVSSLRGFEGDATPFTD-VTVDSISSLLREHGYQSRGFEVMYNGYTGRKLVAQVFLGPTY 1123

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRL+HMVDDKIH+RARGP QIL RQP+EGRARDGGLRFGEMERDC I+HGA+ FL+ERL
Sbjct: 1124 YQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERL 1183

Query: 385  FEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMN 443
            F+VSDP+R+H+C+ CGL+  IA ++ + FEC+ CKNK +ISQV +PYAAKLLFQELMSMN
Sbjct: 1184 FDVSDPFRVHICDICGLMTPIAKLKKSDFECRACKNKNKISQVHIPYAAKLLFQELMSMN 1243

Query: 444  IAPRLMV 450
            IA RL  
Sbjct: 1244 IAARLFT 1250


>gi|50293059|ref|XP_448959.1| hypothetical protein [Candida glabrata CBS 138]
 gi|51701949|sp|Q6FLD5.1|RPB2_CANGA RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA
            polymerase II subunit 2; Short=RNA polymerase II subunit
            B2
 gi|49528272|emb|CAG61929.1| unnamed protein product [Candida glabrata]
          Length = 1223

 Score =  531 bits (1368), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 262/485 (54%), Positives = 328/485 (67%), Gaps = 83/485 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV++TN++ RMDT+A++LYYP KPL TTR                              
Sbjct: 777  MGVFLTNYNFRMDTMANILYYPQKPLGTTR------------------------------ 806

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           +MEYL+FRELPAG N+IVAI CY+GYNQEDS+I+N S+++RG FR
Sbjct: 807  ---------------AMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFR 851

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+FFRSY D E K      E FEKP R     M++  YDKLD+DG+IAPG+RVSG+D++I
Sbjct: 852  SLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDEDGLIAPGVRVSGEDIII 911

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  +  +E+EL   T   SKRD ST LR++E GIVDQV++T N DG KF K+RVR+ +
Sbjct: 912  GKTTPIAPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLITTNQDGLKFVKVRVRTTK 971

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            +PQIGDKFASRHGQKGT GI YR+E                                   
Sbjct: 972  VPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLS 1031

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             V++  G  GDA+PF D + V+ IS LL+E+GYQ RG EVM+NGHTG+K+ AQ+F GPTY
Sbjct: 1032 KVAALSGNEGDASPFTD-ITVEGISKLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTY 1090

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRL+HMVDDKIH+RARGP+Q+L RQP+EGR+RDGGLRFGEMERDC I+HGAA FL+ERL
Sbjct: 1091 YQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAAFLKERL 1150

Query: 385  FEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMN 443
             E SD +R+H+C  CGL++ IA + +N FECKGC NK  I Q+ +PYAAKLLFQELM+MN
Sbjct: 1151 MEASDAFRVHICGICGLMSVIAKLNHNQFECKGCDNKIDIYQIHIPYAAKLLFQELMAMN 1210

Query: 444  IAPRL 448
            I PRL
Sbjct: 1211 ITPRL 1215


>gi|367005628|ref|XP_003687546.1| hypothetical protein TPHA_0J02910 [Tetrapisispora phaffii CBS 4417]
 gi|357525850|emb|CCE65112.1| hypothetical protein TPHA_0J02910 [Tetrapisispora phaffii CBS 4417]
          Length = 1224

 Score =  531 bits (1368), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 264/485 (54%), Positives = 328/485 (67%), Gaps = 83/485 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV++TN++VRMDT+A++LYYP KPL TTR                              
Sbjct: 778  MGVFLTNYNVRMDTMANILYYPQKPLGTTR------------------------------ 807

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           +MEYL+FRELPAG N+IVAI CY+GYNQEDS+I+N S+++RG FR
Sbjct: 808  ---------------AMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFR 852

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+FFRSY D E K      E FEKP R     M++  YDKLDDDG+I+PG+RVSG+D++I
Sbjct: 853  SLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGSYDKLDDDGLISPGVRVSGEDIII 912

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  +  +E+EL   T   SKRD ST LR++E GIVDQV++T N DG KF K+RVR+ +
Sbjct: 913  GKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLVTTNQDGLKFVKVRVRTTK 972

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            +PQIGDKFASRHGQKGT GI Y +E                                   
Sbjct: 973  VPQIGDKFASRHGQKGTIGITYGREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLS 1032

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             V++  G  GDA+PF D + V+ IS LL+E+GYQ RG EVM+NGHTG+K+ AQ+F GPTY
Sbjct: 1033 KVAALSGNEGDASPFTD-ITVEGISKLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTY 1091

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRL+HMVDDKIH+RARGP+Q+L RQP+EGR+RDGGLRFGEMERDC I+HGAA FL+ERL
Sbjct: 1092 YQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAAFLKERL 1151

Query: 385  FEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMN 443
             E SD +R+HVC  CGL+  IA + +N FECKGC NK  I Q+R+PYAAKLLFQELM+MN
Sbjct: 1152 MEASDAFRVHVCGICGLMTVIAKLNHNQFECKGCDNKIDIYQIRIPYAAKLLFQELMAMN 1211

Query: 444  IAPRL 448
            I PRL
Sbjct: 1212 ITPRL 1216


>gi|154279576|ref|XP_001540601.1| DNA-directed RNA polymerase II 138 kDa polypeptide [Ajellomyces
            capsulatus NAm1]
 gi|150412544|gb|EDN07931.1| DNA-directed RNA polymerase II 138 kDa polypeptide [Ajellomyces
            capsulatus NAm1]
          Length = 1743

 Score =  531 bits (1367), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 266/487 (54%), Positives = 332/487 (68%), Gaps = 83/487 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV++TNF  RM+T+A++LYYP KPL TTR                              
Sbjct: 1295 MGVFLTNFDQRMETMANILYYPQKPLATTR------------------------------ 1324

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 1325 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 1369

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+F+R+Y D+E        E+FEKP R     M++  YDK+DDDGI+APG+RVSG+D++I
Sbjct: 1370 SLFYRTYTDSEKMVGMTVVERFEKPMRSDTLRMKHGTYDKVDDDGIVAPGVRVSGEDIII 1429

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  L    +EL   TK+ +K D ST LR++E+GIVDQV+++ + D  KF K+R+R+ +
Sbjct: 1430 GKTAPLAPEAEELGQRTKQHTKLDVSTPLRSTESGIVDQVLVSTSNDDLKFVKVRMRTTK 1489

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 1490 IPQIGDKFASRHGQKGTIGITYRQEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQLS 1549

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VSS +G  GDATPF D V V  IS+LL+E+GYQ RG EVM+NG+TGRK+ AQVFLGPTY
Sbjct: 1550 KVSSLRGFEGDATPFTD-VTVDSISSLLREHGYQSRGFEVMYNGYTGRKLVAQVFLGPTY 1608

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRL+HMVDDKIH+RARGP QIL RQP+EGRARDGGLRFGEMERDC I+HGA+ FL+ERL
Sbjct: 1609 YQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERL 1668

Query: 385  FEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMN 443
            F+VSDP+R+H+C+ CGL+  IA ++   FEC+ CKNK +ISQV +PYAAKLLFQELMSMN
Sbjct: 1669 FDVSDPFRVHICDICGLMTPIAKLKKGDFECRACKNKNKISQVHIPYAAKLLFQELMSMN 1728

Query: 444  IAPRLMV 450
            IA R+  
Sbjct: 1729 IAARMFT 1735


>gi|336265263|ref|XP_003347404.1| hypothetical protein SMAC_08679 [Sordaria macrospora k-hell]
 gi|380087481|emb|CCC14221.1| unnamed protein product [Sordaria macrospora k-hell]
          Length = 1274

 Score =  531 bits (1367), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 269/488 (55%), Positives = 330/488 (67%), Gaps = 85/488 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG ++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 826  MGFFLTNYSRRMDTMANILYYPQKPLATTR------------------------------ 855

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYL+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 856  ---------------SMEYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGIFR 900

Query: 121  SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
            S+FFRSY D E KR+G +  EQFEKP+R      ++  YDKL++DGIIAPG+RV+GDD++
Sbjct: 901  SLFFRSYTDCE-KRVGINIVEQFEKPDRSNTLRPKHGTYDKLENDGIIAPGIRVTGDDII 959

Query: 180  IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
            IGKT  +  +  EL   T +  KRD ST LR++E+GIVD V  T N DG ++ K+RVR+ 
Sbjct: 960  IGKTSPINPDNQELGQRTAQHVKRDASTPLRSTESGIVDSVAFTTNQDGLRYVKVRVRTT 1019

Query: 240  RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
            +IPQIGDKFASRHGQKGT G+ YRQE                                  
Sbjct: 1020 KIPQIGDKFASRHGQKGTIGVTYRQEDMPFTAEGITPDIIINPHAIPSRMTIAHLIECLL 1079

Query: 266  --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
              V S KG  GDATPF D V V  +S LL+E+GYQ RG E+M++GHTGRK+ AQVF GPT
Sbjct: 1080 SKVGSLKGMEGDATPFTD-VTVDSVSNLLREHGYQSRGFEIMYHGHTGRKLRAQVFFGPT 1138

Query: 324  YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRER 383
            YYQRL+HMVDDKIH+RARGPVQI+ RQP+EGRARDGGLRFGEMERDC I+HGAA FL+ER
Sbjct: 1139 YYQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAASFLKER 1198

Query: 384  LFEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSM 442
            LFEVSD +R+H+C  CGL+  IAN+   +FEC+ CKNKT+I+QV +PYAAKLLFQELMSM
Sbjct: 1199 LFEVSDAFRVHICEICGLMTPIANLTKQSFECRPCKNKTKIAQVHMPYAAKLLFQELMSM 1258

Query: 443  NIAPRLMV 450
            NIA R+  
Sbjct: 1259 NIASRMFT 1266


>gi|342888977|gb|EGU88188.1| hypothetical protein FOXB_01326 [Fusarium oxysporum Fo5176]
          Length = 1270

 Score =  531 bits (1367), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 265/487 (54%), Positives = 330/487 (67%), Gaps = 83/487 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG ++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 822  MGFFLTNYSRRMDTMANILYYPQKPLATTR------------------------------ 851

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 852  ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 896

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+FFRSY D E K   +  E FEKP +QT   M++  YDKLD+DGI+APG+RVSG+D++I
Sbjct: 897  SLFFRSYSDQEKKVGLNYTEIFEKPFQQTTLRMKHGTYDKLDEDGIVAPGVRVSGEDIII 956

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  + +   +L   T+   +RD ST LR++E GIVDQV+LT+N D  K+ K+RVR+ +
Sbjct: 957  GKTAPIDQENQDLGTRTQSHQRRDISTPLRSTENGIVDQVILTVNADNVKYVKVRVRTTK 1016

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGT G+ YRQE                                   
Sbjct: 1017 IPQIGDKFASRHGQKGTIGVTYRQEDMPFSREGLTPDIIINPHAIPSRMTIAHLIECLLS 1076

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+ +G  GDATPF D V V  +S LL+++GYQ RG EVM+NGHTGRK+ AQVF GPTY
Sbjct: 1077 KVSTLEGMEGDATPFTD-VTVDSVSELLRKHGYQSRGFEVMYNGHTGRKLRAQVFFGPTY 1135

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRL+HMVDDKIH+RARGPVQI+ RQP+EGRARDGGLRFGEMERDC I+HGAA FL+ERL
Sbjct: 1136 YQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERL 1195

Query: 385  FEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMN 443
            FEVSD +R+HVC  CGL+  IAN+   +FEC+ CKNKT+I+Q+ +PYAAKLLFQEL +MN
Sbjct: 1196 FEVSDAFRVHVCEICGLMTPIANLSKQSFECRPCKNKTKIAQIHIPYAAKLLFQELQAMN 1255

Query: 444  IAPRLMV 450
            IA R+  
Sbjct: 1256 IAARMFT 1262


>gi|301101902|ref|XP_002900039.1| DNA-directed RNA polymerase II 135 kDa polypeptide [Phytophthora
            infestans T30-4]
 gi|262102614|gb|EEY60666.1| DNA-directed RNA polymerase II 135 kDa polypeptide [Phytophthora
            infestans T30-4]
          Length = 1202

 Score =  531 bits (1367), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 265/497 (53%), Positives = 326/497 (65%), Gaps = 94/497 (18%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG+Y +NF  RMDT+A+VL YP KPLVTTR+                             
Sbjct: 743  MGIYCSNFRARMDTMANVLNYPQKPLVTTRA----------------------------- 773

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                            MEYL FRELP+GIN+IV I  YTGYNQEDS+I+N SA++RG+FR
Sbjct: 774  ----------------MEYLHFRELPSGINAIVGIASYTGYNQEDSLIMNQSAIDRGFFR 817

Query: 121  SVFFRSYKDAESKRIGDQE----------EQFEKPNRQTCQGMRNAIYDKLDDDGIIAPG 170
            S F+R Y D E  +               E+FEKP+R+ C G+R+  Y KLD+DG++APG
Sbjct: 818  STFYRCYIDQERNKSPHGGPGGGAGGANCEEFEKPSRENCLGLRHGSYHKLDNDGLVAPG 877

Query: 171  LRVSGDDVVIGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYK 230
             RVSG+D++IGKT  LP++ED      +R  KRD ST LR+ E GI+D VMLT N DG+K
Sbjct: 878  TRVSGNDIIIGKTSPLPQSEDS--SLEQRHQKRDASTALRSHENGIIDSVMLTTNADGFK 935

Query: 231  FCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQE------------------------- 265
            F K+R R++R+PQIGDKFASRHGQKGT G+ YRQE                         
Sbjct: 936  FTKVRFRNIRVPQIGDKFASRHGQKGTIGMTYRQEDMPFTVEGITPDIVVNPHAIPSRMT 995

Query: 266  -----------VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKI 314
                       VSS  G+ GDATPF D V VQ I+  L   GYQ  GNEVM++GHTGR++
Sbjct: 996  VGHLVECLLGKVSSQTGDEGDATPFTD-VTVQAIADTLHNLGYQKHGNEVMYSGHTGRRL 1054

Query: 315  NAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISH 374
             AQ+F+GPT+YQRLKHMVDDKIHSR+RGPV +L RQPMEGRAR+GGLR GEMERDC ISH
Sbjct: 1055 TAQIFIGPTFYQRLKHMVDDKIHSRSRGPVTMLTRQPMEGRAREGGLRMGEMERDCLISH 1114

Query: 375  GAAQFLRERLFEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKL 434
            G+A FL +RLF  SD YR+HVC+ CG+IAIAN+R  TFEC+ C+NKTQISQV +PY+ KL
Sbjct: 1115 GSANFLMDRLFANSDAYRVHVCDICGIIAIANLRKMTFECRTCRNKTQISQVHIPYSCKL 1174

Query: 435  LFQELMSMNIAPRLMVV 451
            LFQELM+M+IAPRL  +
Sbjct: 1175 LFQELMAMSIAPRLFTL 1191


>gi|403214331|emb|CCK68832.1| hypothetical protein KNAG_0B03910 [Kazachstania naganishii CBS 8797]
          Length = 1220

 Score =  531 bits (1367), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 262/485 (54%), Positives = 328/485 (67%), Gaps = 83/485 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV++TN++VRMDT+A++LYYP KPL TTR                              
Sbjct: 774  MGVFLTNYNVRMDTMANILYYPQKPLGTTR------------------------------ 803

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           +MEYL+FRELPAG N+IVAI CY+GYNQEDS+I+N S+++RG FR
Sbjct: 804  ---------------AMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFR 848

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+FFRSY D E K      E FEKP R     M++  YDKLDDDG+IAPG+RVSG+D++I
Sbjct: 849  SLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLIAPGVRVSGEDIII 908

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  +  +E+EL   T   SKRD ST LR++E GI+DQV++T N DG KF K+RVR+ +
Sbjct: 909  GKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIIDQVLVTTNQDGLKFVKVRVRTTK 968

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            +PQIGDKFASRHGQKGT GI Y +E                                   
Sbjct: 969  VPQIGDKFASRHGQKGTIGITYSREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLS 1028

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             V++  G  GDA+PF D + V+ IS LL+E+GY  RG EVM+NGHTG+K+ AQ+F GPTY
Sbjct: 1029 KVAALSGNEGDASPFTD-ITVEGISKLLREHGYHSRGFEVMYNGHTGKKLMAQIFFGPTY 1087

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRL+HMVDDKIH+RARGP+Q+L RQP+EGR+RDGGLRFGEMERDC I+HGAA FL+ERL
Sbjct: 1088 YQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAAFLKERL 1147

Query: 385  FEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMN 443
             E SD +R+H+C  CGL++ IA + +N FECKGC NK  I Q+R+PYAAKLLFQELM+MN
Sbjct: 1148 MEASDSFRVHICGNCGLMSVIAKLSHNQFECKGCNNKIDIYQIRIPYAAKLLFQELMAMN 1207

Query: 444  IAPRL 448
            I PRL
Sbjct: 1208 ITPRL 1212


>gi|156835986|ref|XP_001642238.1| hypothetical protein Kpol_186p2 [Vanderwaltozyma polyspora DSM 70294]
 gi|156112711|gb|EDO14380.1| hypothetical protein Kpol_186p2 [Vanderwaltozyma polyspora DSM 70294]
          Length = 1223

 Score =  530 bits (1366), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 263/485 (54%), Positives = 327/485 (67%), Gaps = 83/485 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV++TN++VRMDT+A++LYYP KPL TTR                              
Sbjct: 777  MGVFLTNYNVRMDTMANILYYPQKPLGTTR------------------------------ 806

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           +MEYL+FRELPAG N+IVAI CY+GYNQEDS+I+N S+++RG FR
Sbjct: 807  ---------------AMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFR 851

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+FFRSY D E K      E FEKP R     M++  YDKLDDDG+IAPG+RVSG+D++I
Sbjct: 852  SLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGSYDKLDDDGLIAPGVRVSGEDIII 911

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  +  +E+EL   T   SKRD ST LR++E GIVDQV++T N DG KF K+RVR+ +
Sbjct: 912  GKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLITTNQDGLKFVKVRVRTTK 971

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            +PQIGDKFASRHGQKGT GI Y +E                                   
Sbjct: 972  VPQIGDKFASRHGQKGTIGITYGREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLS 1031

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             V++  G  GDA+PF D + V+ IS LL+E+GYQ RG EVM+NGHTG+K+ AQ+F GPTY
Sbjct: 1032 KVAALSGNEGDASPFTD-ITVEGISKLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTY 1090

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRL+HMVDDKIH+RARGP+Q+L RQP+EGR+RDGGLRFGEMERDC I+HGAA FL+ERL
Sbjct: 1091 YQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAASFLKERL 1150

Query: 385  FEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMN 443
             E SD +R+H+C  CGL+  IA + +N FECKGC NK  I Q+ +PYAAKLLFQELM+MN
Sbjct: 1151 MEASDAFRVHICGICGLMTVIAKLNHNQFECKGCDNKIDIYQIHIPYAAKLLFQELMAMN 1210

Query: 444  IAPRL 448
            I PRL
Sbjct: 1211 ITPRL 1215


>gi|348676682|gb|EGZ16499.1| hypothetical protein PHYSODRAFT_262616 [Phytophthora sojae]
          Length = 1171

 Score =  530 bits (1366), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 265/497 (53%), Positives = 326/497 (65%), Gaps = 94/497 (18%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG+Y +NF  RMDT+A+VL YP KPLVTTR+                             
Sbjct: 712  MGIYCSNFRARMDTMANVLNYPQKPLVTTRA----------------------------- 742

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                            MEYL FRELP+GIN+IV I  YTGYNQEDS+I+N SA++RG+FR
Sbjct: 743  ----------------MEYLHFRELPSGINAIVGIASYTGYNQEDSLIMNQSAIDRGFFR 786

Query: 121  SVFFRSYKDAESKRIGDQE----------EQFEKPNRQTCQGMRNAIYDKLDDDGIIAPG 170
            S F+R Y D E  +               E+FEKP+R+ C G+R+  Y KLD+DG++APG
Sbjct: 787  STFYRCYIDQERNKSPHGGPGGGAGGANCEEFEKPSRENCLGLRHGSYHKLDNDGLVAPG 846

Query: 171  LRVSGDDVVIGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYK 230
             RVSG+D++IGKT  LP++ED      +R  KRD ST LR+ E GI+D VMLT N DG+K
Sbjct: 847  TRVSGNDIIIGKTSPLPQSEDS--SLEQRHQKRDASTALRSHENGIIDSVMLTTNADGFK 904

Query: 231  FCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQE------------------------- 265
            F K+R R++R+PQIGDKFASRHGQKGT G+ YRQE                         
Sbjct: 905  FTKVRFRNIRVPQIGDKFASRHGQKGTIGMTYRQEDMPFTVEGITPDIVVNPHAIPSRMT 964

Query: 266  -----------VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKI 314
                       VSS  G+ GDATPF D V VQ I+  L   GYQ  GNEVM++GHTGR++
Sbjct: 965  VGHLVECLLGKVSSQTGDEGDATPFTD-VTVQAIADTLHNLGYQKHGNEVMYSGHTGRRL 1023

Query: 315  NAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISH 374
             AQ+F+GPT+YQRLKHMVDDKIHSR+RGPV +L RQPMEGRAR+GGLR GEMERDC ISH
Sbjct: 1024 TAQIFIGPTFYQRLKHMVDDKIHSRSRGPVTMLTRQPMEGRAREGGLRMGEMERDCLISH 1083

Query: 375  GAAQFLRERLFEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKL 434
            G+A FL +RLF  SD YR+HVC+ CG+IAIAN+R  TFEC+ C+NKTQISQV +PY+ KL
Sbjct: 1084 GSANFLMDRLFANSDAYRVHVCDICGIIAIANLRKMTFECRTCRNKTQISQVHIPYSCKL 1143

Query: 435  LFQELMSMNIAPRLMVV 451
            LFQELM+M+IAPRL  +
Sbjct: 1144 LFQELMAMSIAPRLFTL 1160


>gi|225680527|gb|EEH18811.1| DNA-directed RNA polymerase II subunit RPB2 [Paracoccidioides
            brasiliensis Pb03]
 gi|226292836|gb|EEH48256.1| DNA-directed RNA polymerase II subunit RPB2 [Paracoccidioides
            brasiliensis Pb18]
          Length = 1258

 Score =  530 bits (1365), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 266/485 (54%), Positives = 331/485 (68%), Gaps = 83/485 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV++TNF  RM+T+A++LYYP KPL TTR                              
Sbjct: 810  MGVFLTNFDQRMETMANILYYPQKPLATTR------------------------------ 839

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 840  ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 884

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+F+R+Y D+E        E+FEKP R     M++  YDK+DDDGI+APG+RVSG+D++I
Sbjct: 885  SLFYRTYTDSEKMVGMTVVERFEKPMRSDTLRMKHGTYDKVDDDGIVAPGVRVSGEDIII 944

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  L  + +EL   TK+ +K D ST LR++E+GIVDQV+++ + D  KF K+R R+ +
Sbjct: 945  GKTAPLAPDAEELGQRTKQHTKVDVSTPLRSTESGIVDQVLISTSNDDLKFVKVRTRTTK 1004

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 1005 IPQIGDKFASRHGQKGTIGITYRQEDMPFTREGITPDIIINPHAIPSRMTIAHLIECQLS 1064

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VSS +G  GDATPF D V V  IS LL+E+GYQ RG EVM+NGHTGRK+ AQ+FLGPTY
Sbjct: 1065 KVSSLRGFEGDATPFTD-VTVDSISGLLREHGYQSRGFEVMYNGHTGRKLVAQIFLGPTY 1123

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRL+HMVDDKIH+RARGP QIL RQP+EGRARDGGLRFGEMERDC I+HGA+ FL+ERL
Sbjct: 1124 YQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERL 1183

Query: 385  FEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMN 443
            F+VSDP+R+H+C+ CGL+  IA ++   FEC+ CKNK +ISQV +PYAAKLLFQELMSMN
Sbjct: 1184 FDVSDPFRVHICDICGLMTPIAKLKKGDFECRACKNKNKISQVHIPYAAKLLFQELMSMN 1243

Query: 444  IAPRL 448
            IA R+
Sbjct: 1244 IAARM 1248


>gi|295661506|ref|XP_002791308.1| DNA-directed RNA polymerase II subunit RPB2 [Paracoccidioides sp.
            'lutzii' Pb01]
 gi|226280870|gb|EEH36436.1| DNA-directed RNA polymerase II subunit RPB2 [Paracoccidioides sp.
            'lutzii' Pb01]
          Length = 1258

 Score =  530 bits (1365), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 266/485 (54%), Positives = 331/485 (68%), Gaps = 83/485 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV++TNF  RM+T+A++LYYP KPL TTR                              
Sbjct: 810  MGVFLTNFDQRMETMANILYYPQKPLATTR------------------------------ 839

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 840  ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 884

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+F+R+Y D+E        E+FEKP R     M++  YDK+DDDGI+APG+RVSG+D++I
Sbjct: 885  SLFYRTYTDSEKMVGMTVVERFEKPMRSDTLRMKHGTYDKVDDDGIVAPGVRVSGEDIII 944

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  L  + +EL   TK+ +K D ST LR++E+GIVDQV+++ + D  KF K+R R+ +
Sbjct: 945  GKTAPLAPDAEELGQRTKQHTKVDVSTPLRSTESGIVDQVLISTSNDDLKFVKVRTRTTK 1004

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 1005 IPQIGDKFASRHGQKGTIGITYRQEDMPFTREGITPDIIINPHAIPSRMTIAHLIECQLS 1064

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VSS +G  GDATPF D V V  IS LL+E+GYQ RG EVM+NGHTGRK+ AQ+FLGPTY
Sbjct: 1065 KVSSLRGFEGDATPFTD-VTVDSISGLLREHGYQSRGFEVMYNGHTGRKLVAQIFLGPTY 1123

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRL+HMVDDKIH+RARGP QIL RQP+EGRARDGGLRFGEMERDC I+HGA+ FL+ERL
Sbjct: 1124 YQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERL 1183

Query: 385  FEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMN 443
            F+VSDP+R+H+C+ CGL+  IA ++   FEC+ CKNK +ISQV +PYAAKLLFQELMSMN
Sbjct: 1184 FDVSDPFRVHICDICGLMTPIAKLKKGDFECRACKNKNKISQVHIPYAAKLLFQELMSMN 1243

Query: 444  IAPRL 448
            IA R+
Sbjct: 1244 IAARM 1248


>gi|336466639|gb|EGO54804.1| DNA-dependent RNA polymerase II RPB140 [Neurospora tetrasperma FGSC
            2508]
 gi|350286464|gb|EGZ67711.1| DNA-dependent RNA polymerase II RPB140 [Neurospora tetrasperma FGSC
            2509]
          Length = 1287

 Score =  530 bits (1364), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 268/488 (54%), Positives = 330/488 (67%), Gaps = 85/488 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG ++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 839  MGFFLTNYSRRMDTMANILYYPQKPLATTR------------------------------ 868

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYL+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 869  ---------------SMEYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGIFR 913

Query: 121  SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
            S+FFRSY D E KR+G +  EQFEKP+R      ++  YDKL++DGIIAPG+RV+GDD++
Sbjct: 914  SLFFRSYTDCE-KRVGINIVEQFEKPDRSNTLRPKHGTYDKLENDGIIAPGIRVTGDDII 972

Query: 180  IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
            IGKT  +  +  EL   T +  KRD ST LR++E+GIVD V  T N DG ++ K+RVR+ 
Sbjct: 973  IGKTSPINPDNQELGQRTAQHVKRDASTPLRSTESGIVDSVAFTTNQDGLRYVKVRVRTT 1032

Query: 240  RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
            +IPQIGDKFASRHGQKGT G+ YRQE                                  
Sbjct: 1033 KIPQIGDKFASRHGQKGTIGVTYRQEDMPFTAEGITPDIIINPHAIPSRMTIAHLIECLL 1092

Query: 266  --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
              V + KG  GDATPF D V V  +S LL+E+GYQ RG E+M++GHTG+K+ AQVF GPT
Sbjct: 1093 SKVGALKGMEGDATPFTD-VTVDSVSNLLREHGYQSRGFEIMYHGHTGKKLRAQVFFGPT 1151

Query: 324  YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRER 383
            YYQRL+HMVDDKIH+RARGPVQI+ RQP+EGRARDGGLRFGEMERDC I+HGAA FL+ER
Sbjct: 1152 YYQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKER 1211

Query: 384  LFEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSM 442
            LFEVSD +R+H+C  CGL+  IAN+   +FEC+ CKNKT+I+QV +PYAAKLLFQELMSM
Sbjct: 1212 LFEVSDAFRVHICEICGLMTPIANLTKQSFECRPCKNKTKIAQVHMPYAAKLLFQELMSM 1271

Query: 443  NIAPRLMV 450
            NIA RL  
Sbjct: 1272 NIASRLFT 1279


>gi|444313813|ref|XP_004177564.1| hypothetical protein TBLA_0A02460 [Tetrapisispora blattae CBS 6284]
 gi|387510603|emb|CCH58045.1| hypothetical protein TBLA_0A02460 [Tetrapisispora blattae CBS 6284]
          Length = 1236

 Score =  530 bits (1364), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 260/485 (53%), Positives = 327/485 (67%), Gaps = 83/485 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV++TN++VRMDT+A++LYYP KPL TTR                              
Sbjct: 790  MGVFLTNYNVRMDTMANILYYPQKPLGTTR------------------------------ 819

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYL+FRELPAG N+IVAI CY+GYNQEDS+I+N S+++RG FR
Sbjct: 820  ---------------SMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFR 864

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+FFRSY D E K      E FEKP R     M++  YDKLDDDG+I+PG+RVSG+D++I
Sbjct: 865  SLFFRSYMDQEKKYGMSITETFEKPQRTNTLKMKHGSYDKLDDDGLISPGVRVSGEDIII 924

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  +  +E+EL   T   SKRD ST LR++E GI+DQV++T N DG KF K+RVR+ +
Sbjct: 925  GKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIIDQVLITTNQDGLKFVKVRVRTTK 984

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            +PQIGDKFASRHGQKGT GI Y +E                                   
Sbjct: 985  VPQIGDKFASRHGQKGTIGITYGREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLS 1044

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             V++  G  GDA+PF D + V+ IS LL+E+GY  RG E+M+NGHTG+K+ AQ+F GPTY
Sbjct: 1045 KVAALSGNEGDASPFTD-ITVEGISKLLREHGYHSRGFEIMYNGHTGKKLMAQIFFGPTY 1103

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRL+HMVDDKIH+RARGP+Q+L RQP+EGR+RDGGLRFGEMERDC I+HGAA FL+ERL
Sbjct: 1104 YQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAAFLKERL 1163

Query: 385  FEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMN 443
             E SD +R+H+C  CGL+  IA + +N FECKGC NK  I Q+++PYAAKLLFQELM+MN
Sbjct: 1164 MEASDAFRVHICGICGLMTVIAKLNHNQFECKGCDNKIDIYQIKIPYAAKLLFQELMAMN 1223

Query: 444  IAPRL 448
            I PRL
Sbjct: 1224 ITPRL 1228


>gi|302417061|ref|XP_003006362.1| DNA-directed RNA polymerase II subunit RPB2 [Verticillium albo-atrum
            VaMs.102]
 gi|261355778|gb|EEY18206.1| DNA-directed RNA polymerase II subunit RPB2 [Verticillium albo-atrum
            VaMs.102]
          Length = 1260

 Score =  530 bits (1364), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 267/488 (54%), Positives = 330/488 (67%), Gaps = 85/488 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG ++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 812  MGFFLTNYSRRMDTMANILYYPQKPLATTR------------------------------ 841

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SME+L+FRELPAG N++VAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 842  ---------------SMEFLKFRELPAGQNAVVAIACYSGYNQEDSVIMNQSSIDRGLFR 886

Query: 121  SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
            S+FFRSY D E KR+G +  EQFEKP R     +++  YDKLDDDGI+APG+RVSG+D++
Sbjct: 887  SLFFRSYTDCE-KRVGINLVEQFEKPFRNDTLRLKHGTYDKLDDDGIVAPGVRVSGEDII 945

Query: 180  IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
            IGKT  +  +  EL   T +  KRD ST LR++E GI+D V+LT N DG ++ K+RVR+ 
Sbjct: 946  IGKTSPINPDNQELGQRTMQHVKRDASTPLRSTENGIIDSVILTTNQDGLRYVKVRVRTT 1005

Query: 240  RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
            +IPQIGDKFASRHGQKGT G+ YRQE                                  
Sbjct: 1006 KIPQIGDKFASRHGQKGTIGVTYRQEDMPFTSEGITPDIIINPHAIPSRMTIAHLIECLL 1065

Query: 266  --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
              VS+ KG  GDATPF D V V  +S LL++ GYQ RG EVM+NGHTG+K+ AQVF GPT
Sbjct: 1066 SKVSTLKGMEGDATPFTD-VTVDSVSQLLRDQGYQSRGFEVMYNGHTGKKLRAQVFFGPT 1124

Query: 324  YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRER 383
            YYQRL+HMVDDKIH+RARGPVQI+ RQP+EGRARDGGLRFGEMERDC I+HGAA FL+ER
Sbjct: 1125 YYQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAASFLKER 1184

Query: 384  LFEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSM 442
            LFEVSD +R+HVC  CGL+  IAN+   +FEC+ CKNKT+I+Q+ +PYAAKLLFQEL SM
Sbjct: 1185 LFEVSDAFRVHVCEICGLMTPIANLSKQSFECRPCKNKTKIAQIHIPYAAKLLFQELQSM 1244

Query: 443  NIAPRLMV 450
            NIA R+  
Sbjct: 1245 NIAARMFT 1252


>gi|28881404|emb|CAD70445.1| DNA-dependent RNA polymerase II RPB140 (RPB2) [Neurospora crassa]
          Length = 1287

 Score =  530 bits (1364), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 268/488 (54%), Positives = 330/488 (67%), Gaps = 85/488 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG ++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 839  MGFFLTNYSRRMDTMANILYYPQKPLATTR------------------------------ 868

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYL+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 869  ---------------SMEYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGIFR 913

Query: 121  SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
            S+FFRSY D E KR+G +  EQFEKP+R      ++  YDKL++DGIIAPG+RV+GDD++
Sbjct: 914  SLFFRSYTDCE-KRVGINIVEQFEKPDRSNTLRPKHGTYDKLENDGIIAPGIRVTGDDII 972

Query: 180  IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
            IGKT  +  +  EL   T +  KRD ST LR++E+GIVD V  T N DG ++ K+RVR+ 
Sbjct: 973  IGKTSPINPDNQELGQRTAQHVKRDASTPLRSTESGIVDSVAFTTNQDGLRYVKVRVRTT 1032

Query: 240  RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
            +IPQIGDKFASRHGQKGT G+ YRQE                                  
Sbjct: 1033 KIPQIGDKFASRHGQKGTIGVTYRQEDMPFTAEGITPDIIINPHAIPSRMTIAHLIECLL 1092

Query: 266  --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
              V + KG  GDATPF D V V  +S LL+E+GYQ RG E+M++GHTG+K+ AQVF GPT
Sbjct: 1093 SKVGALKGMEGDATPFTD-VTVDSVSNLLREHGYQSRGFEIMYHGHTGKKLRAQVFFGPT 1151

Query: 324  YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRER 383
            YYQRL+HMVDDKIH+RARGPVQI+ RQP+EGRARDGGLRFGEMERDC I+HGAA FL+ER
Sbjct: 1152 YYQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKER 1211

Query: 384  LFEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSM 442
            LFEVSD +R+H+C  CGL+  IAN+   +FEC+ CKNKT+I+QV +PYAAKLLFQELMSM
Sbjct: 1212 LFEVSDAFRVHICEICGLMTPIANLTKQSFECRPCKNKTKIAQVHMPYAAKLLFQELMSM 1271

Query: 443  NIAPRLMV 450
            NIA RL  
Sbjct: 1272 NIASRLFT 1279


>gi|408400353|gb|EKJ79435.1| hypothetical protein FPSE_00366 [Fusarium pseudograminearum CS3096]
          Length = 1269

 Score =  529 bits (1363), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 264/487 (54%), Positives = 330/487 (67%), Gaps = 83/487 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG ++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 821  MGFFLTNYSRRMDTMANILYYPQKPLATTR------------------------------ 850

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 851  ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 895

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+FFRSY D E K   +  E FEKP +QT   M++  YDKLD+DGI+APG+RVSG+D++I
Sbjct: 896  SLFFRSYSDQEKKVGLNYTEIFEKPFQQTTLRMKHGTYDKLDEDGIVAPGVRVSGEDIII 955

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  + +   +L   T+   +RD ST LR++E GIVDQV+LT+N D  K+ K+RVR+ +
Sbjct: 956  GKTAPIDQENQDLGTRTQTHQRRDISTPLRSTENGIVDQVILTVNADNVKYVKVRVRTTK 1015

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGT G+ YRQE                                   
Sbjct: 1016 IPQIGDKFASRHGQKGTIGVTYRQEDMPFSREGLTPDIIINPHAIPSRMTIAHLIECLLS 1075

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+ +G  GDATPF D V V  +S +L+++GYQ RG EVM+NGHTGRK+ AQVF GPTY
Sbjct: 1076 KVSTLEGMEGDATPFTD-VTVDSVSDILRKHGYQSRGFEVMYNGHTGRKLRAQVFFGPTY 1134

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRL+HMVDDKIH+RARGPVQI+ RQP+EGRARDGGLRFGEMERDC I+HGAA FL+ERL
Sbjct: 1135 YQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERL 1194

Query: 385  FEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMN 443
            FEVSD +R+HVC  CGL+  IAN+   +FEC+ CKNKT+I+Q+ +PYAAKLLFQEL +MN
Sbjct: 1195 FEVSDAFRVHVCEICGLMTPIANLSKQSFECRPCKNKTKIAQIHIPYAAKLLFQELQAMN 1254

Query: 444  IAPRLMV 450
            IA R+  
Sbjct: 1255 IAARMFT 1261


>gi|367030607|ref|XP_003664587.1| hypothetical protein MYCTH_2307570 [Myceliophthora thermophila ATCC
            42464]
 gi|347011857|gb|AEO59342.1| hypothetical protein MYCTH_2307570 [Myceliophthora thermophila ATCC
            42464]
          Length = 1276

 Score =  529 bits (1363), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 266/488 (54%), Positives = 335/488 (68%), Gaps = 85/488 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG ++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 828  MGFFLTNYSKRMDTMANILYYPQKPLATTR------------------------------ 857

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 858  ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 902

Query: 121  SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
            S+FFRSY D E KR+G +  E+FEKPNR     ++++ YDKLD DGI+APG+RVSG+D++
Sbjct: 903  SLFFRSYTDCE-KRVGINIVEKFEKPNRSDTLRLKHSTYDKLDADGIVAPGVRVSGEDII 961

Query: 180  IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
            IGKT  +  +  EL   + +  KRD ST LR++E+GIVDQV++T N DG ++ K+RVR+ 
Sbjct: 962  IGKTCPINPDNAELGQRSAQHVKRDASTPLRSTESGIVDQVVVTTNQDGMRYVKVRVRTT 1021

Query: 240  RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
            +IPQIGDKFASRHGQKGT G+ YRQE                                  
Sbjct: 1022 KIPQIGDKFASRHGQKGTIGVTYRQEDMPFTCEGITPDLIINPHAIPSRMTIAHLIECLL 1081

Query: 266  --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
              VS+ KG  GDATPF + V V  +S LL+E+GYQ RG EV+++GHTGRK+ AQVF GPT
Sbjct: 1082 SKVSTLKGMEGDATPFTE-VTVDSVSDLLREHGYQSRGFEVLYHGHTGRKLRAQVFFGPT 1140

Query: 324  YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRER 383
            YYQRL+HMVDDKIH+RARGP+QI+ RQP+EGRARDGGLRFGEMERDC I+HGAA FL+ER
Sbjct: 1141 YYQRLRHMVDDKIHARARGPLQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAASFLKER 1200

Query: 384  LFEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSM 442
            LFEVSD +R+H+C  CGL+  IAN+   +FEC+ CKNKT+I+QV +PYAAKLLFQELMSM
Sbjct: 1201 LFEVSDAFRVHICEICGLMTPIANLTKQSFECRPCKNKTKIAQVHMPYAAKLLFQELMSM 1260

Query: 443  NIAPRLMV 450
            NIA R+  
Sbjct: 1261 NIAARMFT 1268


>gi|346971009|gb|EGY14461.1| DNA-directed RNA polymerase II subunit RPB2 [Verticillium dahliae
            VdLs.17]
          Length = 1260

 Score =  529 bits (1362), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 266/488 (54%), Positives = 330/488 (67%), Gaps = 85/488 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG ++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 812  MGFFLTNYSRRMDTMANILYYPQKPLATTR------------------------------ 841

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SME+L+FRELPAG N++VAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 842  ---------------SMEFLKFRELPAGQNAVVAIACYSGYNQEDSVIMNQSSIDRGLFR 886

Query: 121  SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
            S+FFRSY D E KR+G +  EQFEKP R     +++  YDKLDDDGI+APG+RVSG+D++
Sbjct: 887  SLFFRSYTDCE-KRVGINLVEQFEKPFRNDTLRLKHGTYDKLDDDGIVAPGVRVSGEDII 945

Query: 180  IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
            IGKT  +  +  EL   T +  KRD ST LR++E GI+D V+LT N DG ++ K+RVR+ 
Sbjct: 946  IGKTSPINPDNQELGQRTMQHVKRDASTPLRSTENGIIDSVILTTNQDGLRYVKVRVRTT 1005

Query: 240  RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
            +IPQIGDKFASRHGQKGT G+ YRQE                                  
Sbjct: 1006 KIPQIGDKFASRHGQKGTIGVTYRQEDMPFTSEGITPDIIINPHAIPSRMTIAHLIECLL 1065

Query: 266  --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
              VS+ KG  GDATPF D V V  +S LL++ GYQ RG EVM+NGHTG+K+ AQVF GPT
Sbjct: 1066 SKVSTLKGMEGDATPFTD-VTVDSVSQLLRDQGYQSRGFEVMYNGHTGKKLRAQVFFGPT 1124

Query: 324  YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRER 383
            YYQRL+HMVDDKIH+RARGPVQI+ RQP+EGRARDGGLRFGEMERDC I+HGAA FL+ER
Sbjct: 1125 YYQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAASFLKER 1184

Query: 384  LFEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSM 442
            LFEVSD +R+H+C  CGL+  IAN+   +FEC+ CKNKT+I+Q+ +PYAAKLLFQEL SM
Sbjct: 1185 LFEVSDAFRVHICEICGLMTPIANLSKQSFECRPCKNKTKIAQIHIPYAAKLLFQELQSM 1244

Query: 443  NIAPRLMV 450
            NIA R+  
Sbjct: 1245 NIAARMFT 1252


>gi|254581920|ref|XP_002496945.1| ZYRO0D11770p [Zygosaccharomyces rouxii]
 gi|238939837|emb|CAR28012.1| ZYRO0D11770p [Zygosaccharomyces rouxii]
          Length = 1224

 Score =  529 bits (1362), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 260/485 (53%), Positives = 328/485 (67%), Gaps = 83/485 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV++TN++VRMDT+A++LYYP KPL TTR                              
Sbjct: 778  MGVFLTNYNVRMDTMANILYYPQKPLGTTR------------------------------ 807

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           +MEYL+FRELPAG N+IVAI CY+GYNQEDS+I+N S+++RG FR
Sbjct: 808  ---------------AMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFR 852

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+FFRSY D E K      E FEKP R     M++  YDKLDDDG+IAPG+RVSG+D++I
Sbjct: 853  SLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLIAPGVRVSGEDIII 912

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  +  +E+EL   T   SKRD ST LR++E GIVDQ+++T N DG KF K+RVR+ +
Sbjct: 913  GKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQILITTNQDGLKFVKVRVRTTK 972

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGT GI Y +E                                   
Sbjct: 973  IPQIGDKFASRHGQKGTIGITYGREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLS 1032

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             V++  G  GDA+PF D + V+ IS LL+E+GYQ RG EVM+NGHTG+K+ +Q+F GPTY
Sbjct: 1033 KVAALSGNEGDASPFTD-ITVEGISKLLREHGYQSRGFEVMYNGHTGKKLMSQIFFGPTY 1091

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRL+HMVDDKIH+RARGP+Q+L RQP+EGR+RDGGLRFGEMERDC I+HGAA FL+ERL
Sbjct: 1092 YQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAAFLKERL 1151

Query: 385  FEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMN 443
             E SD +R+H+C  CGL++ +A + +N FEC+GC NK  I Q+ +PYAAKLLFQELM+MN
Sbjct: 1152 MEASDAFRVHICGICGLMSVVAKLNHNQFECRGCDNKIDIYQIHIPYAAKLLFQELMAMN 1211

Query: 444  IAPRL 448
            I PRL
Sbjct: 1212 ITPRL 1216


>gi|429863599|gb|ELA38032.1| DNA-directed RNA polymerase ii subunit rpb2 [Colletotrichum
            gloeosporioides Nara gc5]
          Length = 1259

 Score =  529 bits (1362), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 267/488 (54%), Positives = 329/488 (67%), Gaps = 85/488 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG ++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 811  MGFFLTNYSRRMDTMANILYYPQKPLATTR------------------------------ 840

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 841  ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 885

Query: 121  SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
            S+FFRSY D E KR+G +  EQFEKP R     +++  YDKLDDDGI+APG+RVSG+D++
Sbjct: 886  SLFFRSYTDCE-KRVGINLVEQFEKPFRSDTLRLKHGTYDKLDDDGIVAPGVRVSGEDII 944

Query: 180  IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
            IGKT  +  +  EL   T +  KRD ST LR++E GIVD V++T N DG ++ K+RVR+ 
Sbjct: 945  IGKTSPINPDNQELGQKTTQHVKRDASTPLRSTENGIVDSVIITTNQDGLRYVKVRVRTT 1004

Query: 240  RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
            +IPQIGDKFASRHGQKGT G+ YRQE                                  
Sbjct: 1005 KIPQIGDKFASRHGQKGTIGVTYRQEDMPFTAEGITPDIIINPHAIPSRMTIAHLIECLL 1064

Query: 266  --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
              VS+ KG  GDATPF D V V  +S LL++ GYQ RG E+M+ GHTGRK+ AQVF GPT
Sbjct: 1065 SKVSTLKGMEGDATPFTD-VTVDSVSQLLRDQGYQSRGFEIMYQGHTGRKLRAQVFFGPT 1123

Query: 324  YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRER 383
            YYQRL+HMVDDKIH+RARGPVQI+ RQP+EGRARDGGLRFGEMERDC I+HGAA FL+ER
Sbjct: 1124 YYQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAASFLKER 1183

Query: 384  LFEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSM 442
            LFEVSD +R+HVC  CGL+  IAN+   +FEC+ CKNKT+I+Q+ +PYAAKLLFQEL SM
Sbjct: 1184 LFEVSDAFRVHVCEICGLMTPIANLSKQSFECRPCKNKTKIAQIHIPYAAKLLFQELQSM 1243

Query: 443  NIAPRLMV 450
            NIA R+  
Sbjct: 1244 NIAARMFT 1251


>gi|303315773|ref|XP_003067891.1| DNA-directed RNA polymerase II, putative [Coccidioides posadasii C735
            delta SOWgp]
 gi|240107567|gb|EER25746.1| DNA-directed RNA polymerase II, putative [Coccidioides posadasii C735
            delta SOWgp]
          Length = 1258

 Score =  528 bits (1361), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 266/486 (54%), Positives = 335/486 (68%), Gaps = 85/486 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV++TNF  RM+T+A++LYYP KPL TTR                              
Sbjct: 810  MGVFLTNFDQRMETMANILYYPQKPLATTR------------------------------ 839

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 840  ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 884

Query: 121  SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
            S+F+R+Y D+E K IG    E+FEKP R     M++  YDK+DDDGI+APG+RVSG+D++
Sbjct: 885  SLFYRTYTDSE-KMIGLTVVERFEKPMRSDTLRMKHGTYDKVDDDGIVAPGVRVSGEDII 943

Query: 180  IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
            IGKT  L    +EL   TK+ +K D ST LR++E+GIVDQV+++ + +  KF K+R+R+ 
Sbjct: 944  IGKTAPLAPESEELGQRTKQHTKLDVSTPLRSTESGIVDQVLVSTSNEDLKFVKVRMRTT 1003

Query: 240  RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
            +IPQIGDKFASRHGQKGT G+ +RQE                                  
Sbjct: 1004 KIPQIGDKFASRHGQKGTIGVTFRQEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQL 1063

Query: 266  --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
              VSS +G  GDATPF D V V  +S+LL+E+GYQ RG EVM+NGHTGRK+ AQ+FLGPT
Sbjct: 1064 SKVSSLRGYEGDATPFTD-VTVDSVSSLLREHGYQSRGFEVMYNGHTGRKLVAQIFLGPT 1122

Query: 324  YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRER 383
            YYQRL+HMVDDKIH+RARGP QIL RQP+EGRARDGGLRFGEMERDC I+HGA+ FL+ER
Sbjct: 1123 YYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKER 1182

Query: 384  LFEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSM 442
            LF+VSDP+RIH+C+ CGL+  IA ++   FEC+ CKNK +ISQV +PYAAKLLFQELMSM
Sbjct: 1183 LFDVSDPFRIHICDICGLMTPIAKLKKGDFECRACKNKNKISQVHIPYAAKLLFQELMSM 1242

Query: 443  NIAPRL 448
            NIA R+
Sbjct: 1243 NIAARM 1248


>gi|68300802|gb|AAY89343.1| RNA polymerase II second largest subunit [Antirrhinum majus]
          Length = 1198

 Score =  528 bits (1361), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 262/486 (53%), Positives = 325/486 (66%), Gaps = 86/486 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG+Y+TN+ +RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 749  MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA----------------------------- 779

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                            ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 780  ----------------MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 823

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+FFRSY+D E K     +E F  PNR    GMR+  YDKL+DDG   PG RVSGDDV+I
Sbjct: 824  SLFFRSYRDEEKKMGTLVKEDFGCPNRDNTMGMRHGSYDKLEDDGFAPPGTRVSGDDVII 883

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT     +E++      RF+++D S+ LR+SE+G+VDQV+LT N DG +F K+R+RSVR
Sbjct: 884  GKTTPFTPDENQ----NIRFTRQDHSSSLRHSESGVVDQVLLTTNADGLRFVKVRIRSVR 939

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKF+SRHGQKGT G+ Y Q+                                   
Sbjct: 940  IPQIGDKFSSRHGQKGTIGMTYTQDDMPWSIEGITPDIIVNPHAIPSRMTIGQLIECIMG 999

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGR + + +FLGPTY
Sbjct: 1000 KVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRPLTSMIFLGPTY 1058

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGGLRFGEMERDC I+HGAA FL+ERL
Sbjct: 1059 YQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERL 1118

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            F+ SD YR+HVC  CGL+ IAN++ +++EC+ CKNKT I Q+ +PYA KLL QELMSM I
Sbjct: 1119 FDQSDAYRVHVCERCGLMGIANLKKHSYECRSCKNKTDIVQIYIPYACKLLIQELMSMAI 1178

Query: 445  APRLMV 450
            APRL+ 
Sbjct: 1179 APRLLT 1184


>gi|392867393|gb|EAS29377.2| DNA-directed RNA polymerase II subunit RPB2 [Coccidioides immitis RS]
          Length = 1258

 Score =  528 bits (1360), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 265/486 (54%), Positives = 335/486 (68%), Gaps = 85/486 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV++TNF  RM+T+A++LYYP KPL TTR                              
Sbjct: 810  MGVFLTNFDQRMETMANILYYPQKPLATTR------------------------------ 839

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 840  ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 884

Query: 121  SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
            S+F+R+Y D+E K IG    E+FEKP R     M++  YDK+DDDGI+APG+RVSG+D++
Sbjct: 885  SLFYRTYTDSE-KMIGLTVVERFEKPMRSDTLRMKHGTYDKVDDDGIVAPGVRVSGEDII 943

Query: 180  IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
            IGKT  L    +EL   TK+ +K D ST LR++E+GIVDQV+++ + +  KF K+R+R+ 
Sbjct: 944  IGKTAPLAPESEELGQRTKQHTKLDVSTPLRSTESGIVDQVLVSTSNEDLKFVKVRMRTT 1003

Query: 240  RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
            +IPQIGDKFASRHGQKGT G+ +RQE                                  
Sbjct: 1004 KIPQIGDKFASRHGQKGTIGVTFRQEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQL 1063

Query: 266  --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
              VSS +G  GDATPF D V V  +S+LL+E+GYQ RG EVM+NGHTGRK+ AQ+FLGPT
Sbjct: 1064 SKVSSLRGYEGDATPFTD-VTVDSVSSLLREHGYQSRGFEVMYNGHTGRKLVAQIFLGPT 1122

Query: 324  YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRER 383
            YYQRL+HMVDDKIH+RARGP QIL RQP+EGRARDGGLRFGEMERDC I+HGA+ FL+ER
Sbjct: 1123 YYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKER 1182

Query: 384  LFEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSM 442
            LF+VSDP+R+H+C+ CGL+  IA ++   FEC+ CKNK +ISQV +PYAAKLLFQELMSM
Sbjct: 1183 LFDVSDPFRVHICDICGLMTPIAKLKKGDFECRACKNKNKISQVHIPYAAKLLFQELMSM 1242

Query: 443  NIAPRL 448
            NIA R+
Sbjct: 1243 NIAARM 1248


>gi|452982910|gb|EME82668.1| hypothetical protein MYCFIDRAFT_136855 [Pseudocercospora fijiensis
            CIRAD86]
          Length = 1248

 Score =  528 bits (1359), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 267/486 (54%), Positives = 331/486 (68%), Gaps = 85/486 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV +TN++VRMDT+A+VLYYP KPL TTR                              
Sbjct: 800  MGVTLTNYNVRMDTMANVLYYPQKPLATTR------------------------------ 829

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SME+LRFR+LPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 830  ---------------SMEFLRFRDLPAGQNAIVAISCYSGYNQEDSVIMNQSSIDRGLFR 874

Query: 121  SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
            S+FFR+Y D E KR+G    EQFEKP R     M+   YDKLD+DGII+PG RVSGDDV+
Sbjct: 875  SLFFRAYMDQE-KRVGMSVVEQFEKPVRADTMRMKQGTYDKLDEDGIISPGSRVSGDDVI 933

Query: 180  IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
            IGKT  +P + +EL   TK   KRD ST LR++E GIVDQV+LT N +G +F K+R R  
Sbjct: 934  IGKTAPMPPDAEELGQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNTEGLRFVKVRTRVT 993

Query: 240  RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
            ++PQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 994  KVPQIGDKFASRHGQKGTIGITYRQEDMPFTADGLTPDIIINPHAIPSRMTIAHLIECLL 1053

Query: 266  --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
              V + +G+ GDATPF D V V  IS +L ++G+Q RG EVM+NGHTG+K+NAQVFLGPT
Sbjct: 1054 SKVGALQGQEGDATPFTD-VTVTSISQILADHGFQQRGFEVMYNGHTGKKLNAQVFLGPT 1112

Query: 324  YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRER 383
            YYQRL+HMVDDKIH+RARGP+QIL RQP+EGRARDGGLRFGEMERDC I+HGA+ FL+ER
Sbjct: 1113 YYQRLRHMVDDKIHARARGPLQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKER 1172

Query: 384  LFEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSM 442
            L +VSD +R+H+C  CGL+  IA+++   FEC+ C+NKT+I+QV +PYAAKLLFQEL +M
Sbjct: 1173 LLDVSDAFRVHICEICGLMTPIASIKKQQFECRPCRNKTKIAQVIIPYAAKLLFQELAAM 1232

Query: 443  NIAPRL 448
            N+A R+
Sbjct: 1233 NVATRM 1238


>gi|449302981|gb|EMC98989.1| hypothetical protein BAUCODRAFT_65631 [Baudoinia compniacensis UAMH
            10762]
          Length = 1254

 Score =  527 bits (1358), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 265/486 (54%), Positives = 329/486 (67%), Gaps = 85/486 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV +TNF +RMDT+A+VLYYP KPL TTR                              
Sbjct: 806  MGVTLTNFGIRMDTMANVLYYPQKPLATTR------------------------------ 835

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SME+L+FR+LPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 836  ---------------SMEFLKFRDLPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 880

Query: 121  SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
            S+F+R+Y D E KR+G    EQFEKP R     M+   YDKLDDDGII+PG RVSG+D++
Sbjct: 881  SLFYRAYMDQE-KRVGMSVVEQFEKPVRSDTLKMKGGTYDKLDDDGIISPGSRVSGEDII 939

Query: 180  IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
            IGKT  +  + +EL   TK   KRD ST LR++E GIVDQV+LT N +G KF K+R R+ 
Sbjct: 940  IGKTAPIAPDAEELGQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNTEGLKFVKVRTRTT 999

Query: 240  RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
            ++PQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 1000 KVPQIGDKFASRHGQKGTIGITYRQEDMPFTADGLTPDIIINPHAIPSRMTIAHLIECLL 1059

Query: 266  --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
              V +  G+ GDATPF D V +  ISTLL+E+G+Q RG EVM+NGHTG+K+NAQVFLGPT
Sbjct: 1060 SKVGALTGQEGDATPFTD-VTLTSISTLLEEHGFQRRGFEVMYNGHTGKKLNAQVFLGPT 1118

Query: 324  YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRER 383
            YYQRL+HMVDDKIH+RARGP+QIL RQP+EGRARDGGLRFGEMERDC I+HGA+ FL+ER
Sbjct: 1119 YYQRLRHMVDDKIHARARGPLQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKER 1178

Query: 384  LFEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSM 442
            L +VSD +R+H+C  CGL+  IA ++  T EC+ C+NK +I+QV +PYAAKLLFQEL +M
Sbjct: 1179 LLDVSDAFRVHICEICGLMTPIAKLKEKTIECRQCRNKNRIAQVIIPYAAKLLFQELAAM 1238

Query: 443  NIAPRL 448
            N+A R+
Sbjct: 1239 NVATRM 1244


>gi|320592188|gb|EFX04627.1| DNA-dependent RNA polymerase 2 rpb140 [Grosmannia clavigera kw1407]
          Length = 1266

 Score =  526 bits (1356), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 265/488 (54%), Positives = 333/488 (68%), Gaps = 85/488 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG ++TN+  RMDT+A+VLYYP KPL TTR                              
Sbjct: 818  MGFFLTNYPRRMDTMANVLYYPQKPLATTR------------------------------ 847

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 848  ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 892

Query: 121  SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
            S+FFR+Y D+E KR+G +  E FEKP R     +++  YDKLDDDGI+APG+RVSG+D++
Sbjct: 893  SLFFRAYTDSE-KRVGINFVETFEKPFRSDTLRLKHGTYDKLDDDGIVAPGVRVSGEDII 951

Query: 180  IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
            IGKT  +  +  E+   T+   KRD ST LR++E+GI+DQV++T N D  ++ K+RVR+ 
Sbjct: 952  IGKTSPINPDHQEMGQRTQAHVKRDASTPLRSTESGIIDQVVVTTNQDNLRYVKVRVRTT 1011

Query: 240  RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
            +IPQIGDKFASRHGQKGT G+ YR E                                  
Sbjct: 1012 KIPQIGDKFASRHGQKGTIGVTYRSEDMPFTTEGILPDIIINPHAIPSRMTIAHLIECLL 1071

Query: 266  --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
              V++ KG  GDATPF D V V  +S LL+E+GYQ RG E+M++GHTGRK+ AQVF GPT
Sbjct: 1072 SKVATLKGMEGDATPFTD-VTVDSVSGLLREHGYQSRGFEIMYHGHTGRKLRAQVFFGPT 1130

Query: 324  YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRER 383
            YYQRL+HMVDDKIH+RARGPVQI+ RQP+EGRARDGGLRFGEMERDC I+HGAA FL+ER
Sbjct: 1131 YYQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKER 1190

Query: 384  LFEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSM 442
            LFEVSD YR+H+C  CGL+  IAN+   +FEC+ CKNKT+I+QV++PYAAKLLFQEL +M
Sbjct: 1191 LFEVSDAYRVHICEICGLMTPIANLTKQSFECRPCKNKTRIAQVQIPYAAKLLFQELAAM 1250

Query: 443  NIAPRLMV 450
            NIA R+  
Sbjct: 1251 NIAARMFT 1258


>gi|322711689|gb|EFZ03262.1| DNA-dependent RNA polymerase II beta subunit [Metarhizium anisopliae
            ARSEF 23]
          Length = 1262

 Score =  526 bits (1355), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 262/487 (53%), Positives = 327/487 (67%), Gaps = 83/487 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG ++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 814  MGFFLTNYSRRMDTMANILYYPQKPLATTR------------------------------ 843

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 844  ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 888

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+FFRSY D E K   +  E FEKP  Q+   M++  YDKLDDDGI+APG+RVSG+D++I
Sbjct: 889  SLFFRSYSDQEKKVGLNYTEVFEKPFHQSTLRMKHGTYDKLDDDGIVAPGVRVSGEDIII 948

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  + +   +L   T    +RD ST LR++E GIVD V+LT+N D  K+ K+RVR+ +
Sbjct: 949  GKTAPIDQESQDLGTRTSVHQRRDISTPLRSTENGIVDSVILTVNADNVKYVKVRVRTTK 1008

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGT G+ YRQE                                   
Sbjct: 1009 IPQIGDKFASRHGQKGTIGVTYRQEDMPFTREGVTPDIIINPHAIPSRMTIAHLIECLLS 1068

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+ +G  GDATPF D V V  +S LL+++GYQ RG E+M+NGHTG+K+ AQVF GPTY
Sbjct: 1069 KVSTLEGMEGDATPFTD-VTVDSVSELLRKHGYQSRGFEIMYNGHTGKKLRAQVFFGPTY 1127

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRL+HMVDDKIH+RARGPVQI+ RQP+EGRARDGGLRFGEMERDC I+HGAA FL+ERL
Sbjct: 1128 YQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERL 1187

Query: 385  FEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMN 443
            FEVSD +R+H+C  CGL+  IAN+   +FEC+ CKNKT+I+Q+ +PYAAKLLFQEL SMN
Sbjct: 1188 FEVSDAFRVHICEICGLMTPIANLSKQSFECRPCKNKTKIAQIHIPYAAKLLFQELQSMN 1247

Query: 444  IAPRLMV 450
            IA R+  
Sbjct: 1248 IAARMFT 1254


>gi|238498864|ref|XP_002380667.1| DNA-dependent RNA polymerase II RPB140 [Aspergillus flavus NRRL3357]
 gi|83774211|dbj|BAE64336.1| unnamed protein product [Aspergillus oryzae RIB40]
 gi|220693941|gb|EED50286.1| DNA-dependent RNA polymerase II RPB140 [Aspergillus flavus NRRL3357]
 gi|391868073|gb|EIT77296.1| RNA polymerase II, second largest subunit [Aspergillus oryzae 3.042]
          Length = 1254

 Score =  526 bits (1355), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 268/486 (55%), Positives = 333/486 (68%), Gaps = 85/486 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV++TNF  RM+T+A++LYYP KPL TTR                              
Sbjct: 806  MGVFLTNFDQRMETMANILYYPQKPLATTR------------------------------ 835

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SME+LRFRELPAG N+IVAI CY+GYNQEDSV++N S+++RG FR
Sbjct: 836  ---------------SMEFLRFRELPAGQNAIVAIACYSGYNQEDSVVMNQSSIDRGLFR 880

Query: 121  SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
            S+F+R+Y D+E K +G    E+FEKP RQ   GMR   YDKLD+DGIIAPG+RVSG+D++
Sbjct: 881  SLFYRTYTDSE-KMVGLTVVERFEKPMRQDTIGMRKGTYDKLDEDGIIAPGVRVSGEDII 939

Query: 180  IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
            IGKT  L  + +EL   TK  +K D ST LR++E+GIVDQV+++ + D  KF K+R+R+ 
Sbjct: 940  IGKTAPLAPDAEELGQRTKAHTKLDVSTPLRSTESGIVDQVLVSTSNDDLKFVKVRMRTT 999

Query: 240  RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
            +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 1000 KIPQIGDKFASRHGQKGTIGITYRQEDMPFSREGVAPDLVINPHAIPSRMTIAHLIECQL 1059

Query: 266  --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
              VS+ +G  GDATPF D V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 1060 SKVSALRGFEGDATPFTD-VTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 1118

Query: 324  YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRER 383
            YYQRL+HMVDDKIH+RARGP QIL RQP+EGRARDGGLRFGEMERDC I+HGA+ FL+ER
Sbjct: 1119 YYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKER 1178

Query: 384  LFEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSM 442
            LF+VSDP+R+H+C+ CGL+  +A ++   FEC+ C NK +ISQV +PYAAKLLFQEL SM
Sbjct: 1179 LFDVSDPFRVHICDDCGLMTPVAKLKKGLFECRLCNNKHRISQVHIPYAAKLLFQELASM 1238

Query: 443  NIAPRL 448
            NIA R+
Sbjct: 1239 NIAARM 1244


>gi|45545313|gb|AAS67504.1| DNA-dependent RNA polymerase II second largest subunit, partial
            [Candida tropicalis]
          Length = 1020

 Score =  526 bits (1355), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 260/479 (54%), Positives = 325/479 (67%), Gaps = 83/479 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV++TN+ VRMDT+A++LYYP KPL TTR                              
Sbjct: 588  MGVFLTNYSVRMDTMANILYYPQKPLATTR------------------------------ 617

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYL+FRELPAG N++VAI CY+GYNQEDS+I+N S+++RG FR
Sbjct: 618  ---------------SMEYLKFRELPAGQNAVVAIACYSGYNQEDSMIMNQSSIDRGLFR 662

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+FFRSY D E ++     E FEKP+R     +++  Y+KLD+DG+IAPG+RVSG+D++I
Sbjct: 663  SLFFRSYMDLEKRQGMKLLETFEKPSRSDTLRLKHGTYEKLDEDGLIAPGIRVSGEDIII 722

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  +P + +EL   T   SKRD ST LR++E+GIVDQV+LT N DG KF K+R+R+ +
Sbjct: 723  GKTTPIPADTEELGQRTLHHSKRDASTPLRSTESGIVDQVLLTTNGDGSKFVKVRMRTTK 782

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGT G+ YR E                                   
Sbjct: 783  IPQIGDKFASRHGQKGTIGVTYRHEDMPFSAEGIVPDLIINPHAIPSRMTVAHLIECLLS 842

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VSS  G  GDA+PF D V  + I+ LL+E+GYQ RG EVM+NGHTG+K+ AQVF GPTY
Sbjct: 843  KVSSLSGFEGDASPFTD-VTAEAIAKLLREHGYQSRGFEVMYNGHTGKKLMAQVFFGPTY 901

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRL+HMVDDKIH+RARGPVQ+L RQP+EGR+RDGGLRFGEMERDC I+HGAA FL+ERL
Sbjct: 902  YQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAGFLKERL 961

Query: 385  FEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSM 442
             E SD +R+HVC  CGL++ IAN++ N FEC+ CKNKT I Q+ +PYAAKLLFQE MSM
Sbjct: 962  MEASDAFRVHVCGMCGLMSVIANLKKNQFECRSCKNKTNIYQIHIPYAAKLLFQEFMSM 1020


>gi|402219896|gb|EJT99968.1| DNA-dependent RNA polymerase II second largest subunit [Dacryopinax
            sp. DJM-731 SS1]
          Length = 1258

 Score =  526 bits (1355), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 257/484 (53%), Positives = 330/484 (68%), Gaps = 82/484 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG+Y+TNF VRMDT+A++LYYP KPL TTR                              
Sbjct: 805  MGIYLTNFQVRMDTMANILYYPQKPLATTR------------------------------ 834

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 835  ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 879

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+++RSY D E        E+FEKP+R T   M++  Y+KL+ DG++APG+ ++G+D++I
Sbjct: 880  SIYYRSYTDMEKSTGVVPIEEFEKPHRDTTVRMKHGTYEKLEADGLVAPGIGINGEDIII 939

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  LP + +EL   T+  ++RD ST L+++E GIVDQV+L+ N +G KF K+R+RS R
Sbjct: 940  GKTAPLPPDSEELGQRTRTHTRRDVSTPLKSTENGIVDQVLLSTNENGVKFVKVRIRSTR 999

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGT G+ YRQE                                   
Sbjct: 1000 IPQIGDKFASRHGQKGTIGMTYRQEDMPFAANGITPDIVINPHAIPSRMTIGHLVECLLS 1059

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             +++  G  GDATPF D + V+ +S+LL+  GYQ RG EVM++GHTGRK+ AQV+LGPTY
Sbjct: 1060 KLATLIGNEGDATPFTD-LTVESVSSLLRNKGYQQRGLEVMYHGHTGRKLQAQVYLGPTY 1118

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIH+RARGPVQI+ RQP+EGR+RDGGLRFGEMERDC ISHG A FL+ER+
Sbjct: 1119 YQRLKHMVDDKIHARARGPVQIMTRQPVEGRSRDGGLRFGEMERDCMISHGVASFLKERM 1178

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            F+ SD  R+HVC+ CGL +IAN++  TFEC+ CKNKT+ +Q  +PYAAKLL QEL +MNI
Sbjct: 1179 FDQSDAARLHVCDICGLASIANLKKQTFECRACKNKTRSTQFYIPYAAKLLLQELQAMNI 1238

Query: 445  APRL 448
            APR+
Sbjct: 1239 APRM 1242


>gi|367041247|ref|XP_003651004.1| hypothetical protein THITE_2110960 [Thielavia terrestris NRRL 8126]
 gi|346998265|gb|AEO64668.1| hypothetical protein THITE_2110960 [Thielavia terrestris NRRL 8126]
          Length = 1282

 Score =  526 bits (1355), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 268/489 (54%), Positives = 336/489 (68%), Gaps = 87/489 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG ++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 834  MGFFLTNYSRRMDTMANILYYPQKPLATTR------------------------------ 863

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 864  ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 908

Query: 121  SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
            S+FFRSY D E KR+G +  E+FEKPNR     ++++ YDKLD DGI+APG+RVSG+D++
Sbjct: 909  SLFFRSYTDCE-KRVGINIIEKFEKPNRSDTLRLKHSTYDKLDMDGIVAPGVRVSGEDII 967

Query: 180  IGKTITL-PENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRS 238
            IGKT  + PEN  EL   + +  KRD ST LR++E+GIVD V+LT N DG ++ K+RVR+
Sbjct: 968  IGKTCPINPENA-ELGQRSTQHVKRDASTPLRSTESGIVDSVILTTNQDGMRYVKVRVRT 1026

Query: 239  VRIPQIGDKFASRHGQKGTCGIQYRQE--------------------------------- 265
             +IPQIGDKFASRHGQKGT G+ +RQE                                 
Sbjct: 1027 TKIPQIGDKFASRHGQKGTIGVTFRQEDMPFTCEGITPDIIINPHAIPSRMTIAHLIECL 1086

Query: 266  ---VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGP 322
               VS+ KG  GDATPF + V V  +S LL+E+GYQ RG E+M++GHTGRK+ AQVF GP
Sbjct: 1087 LSKVSTLKGMEGDATPFTE-VTVDSVSALLREHGYQSRGFEIMYHGHTGRKLRAQVFFGP 1145

Query: 323  TYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRE 382
            TYYQRL+HMVDDKIH+RARGP+QI+ RQP+EGRARDGGLRFGEMERDC I+HGAA FL+E
Sbjct: 1146 TYYQRLRHMVDDKIHARARGPLQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAASFLKE 1205

Query: 383  RLFEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMS 441
            RLFEVSD +R+H+C  CGL+  IAN+   +FEC+ CKNKT+I+QV +PYAAKLLFQELMS
Sbjct: 1206 RLFEVSDAFRVHICEICGLMTPIANLTKQSFECRPCKNKTKIAQVHIPYAAKLLFQELMS 1265

Query: 442  MNIAPRLMV 450
            MNIA R+  
Sbjct: 1266 MNIASRMFT 1274


>gi|322699819|gb|EFY91578.1| DNA-dependent RNA polymerase II beta subunit [Metarhizium acridum
            CQMa 102]
          Length = 1263

 Score =  526 bits (1355), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 262/487 (53%), Positives = 327/487 (67%), Gaps = 83/487 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG ++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 815  MGFFLTNYSRRMDTMANILYYPQKPLATTR------------------------------ 844

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 845  ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 889

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+FFRSY D E K   +  E FEKP  Q+   M++  YDKLDDDGI+APG+RVSG+D++I
Sbjct: 890  SLFFRSYSDQEKKVGLNYTEVFEKPFHQSTLRMKHGTYDKLDDDGIVAPGVRVSGEDIII 949

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  + +   +L   T    +RD ST LR++E GIVD V+LT+N D  K+ K+RVR+ +
Sbjct: 950  GKTAPIDQESQDLGTRTSVHQRRDISTPLRSTENGIVDSVILTVNADNVKYVKVRVRTTK 1009

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGT G+ YRQE                                   
Sbjct: 1010 IPQIGDKFASRHGQKGTIGVTYRQEDMPFTREGVTPDIIINPHAIPSRMTIAHLIECLLS 1069

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+ +G  GDATPF D V V  +S LL+++GYQ RG E+M+NGHTG+K+ AQVF GPTY
Sbjct: 1070 KVSTLEGMEGDATPFTD-VTVDSVSELLRKHGYQSRGFEIMYNGHTGKKLRAQVFFGPTY 1128

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRL+HMVDDKIH+RARGPVQI+ RQP+EGRARDGGLRFGEMERDC I+HGAA FL+ERL
Sbjct: 1129 YQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERL 1188

Query: 385  FEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMN 443
            FEVSD +R+H+C  CGL+  IAN+   +FEC+ CKNKT+I+Q+ +PYAAKLLFQEL SMN
Sbjct: 1189 FEVSDAFRVHICEICGLMTPIANLSKQSFECRPCKNKTKIAQIHIPYAAKLLFQELQSMN 1248

Query: 444  IAPRLMV 450
            IA R+  
Sbjct: 1249 IAARMFT 1255


>gi|317155939|ref|XP_001825469.2| DNA-directed RNA polymerase II subunit RPB2 [Aspergillus oryzae
            RIB40]
          Length = 1221

 Score =  526 bits (1354), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 268/486 (55%), Positives = 333/486 (68%), Gaps = 85/486 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV++TNF  RM+T+A++LYYP KPL TTR                              
Sbjct: 773  MGVFLTNFDQRMETMANILYYPQKPLATTR------------------------------ 802

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SME+LRFRELPAG N+IVAI CY+GYNQEDSV++N S+++RG FR
Sbjct: 803  ---------------SMEFLRFRELPAGQNAIVAIACYSGYNQEDSVVMNQSSIDRGLFR 847

Query: 121  SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
            S+F+R+Y D+E K +G    E+FEKP RQ   GMR   YDKLD+DGIIAPG+RVSG+D++
Sbjct: 848  SLFYRTYTDSE-KMVGLTVVERFEKPMRQDTIGMRKGTYDKLDEDGIIAPGVRVSGEDII 906

Query: 180  IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
            IGKT  L  + +EL   TK  +K D ST LR++E+GIVDQV+++ + D  KF K+R+R+ 
Sbjct: 907  IGKTAPLAPDAEELGQRTKAHTKLDVSTPLRSTESGIVDQVLVSTSNDDLKFVKVRMRTT 966

Query: 240  RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
            +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 967  KIPQIGDKFASRHGQKGTIGITYRQEDMPFSREGVAPDLVINPHAIPSRMTIAHLIECQL 1026

Query: 266  --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
              VS+ +G  GDATPF D V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 1027 SKVSALRGFEGDATPFTD-VTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 1085

Query: 324  YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRER 383
            YYQRL+HMVDDKIH+RARGP QIL RQP+EGRARDGGLRFGEMERDC I+HGA+ FL+ER
Sbjct: 1086 YYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKER 1145

Query: 384  LFEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSM 442
            LF+VSDP+R+H+C+ CGL+  +A ++   FEC+ C NK +ISQV +PYAAKLLFQEL SM
Sbjct: 1146 LFDVSDPFRVHICDDCGLMTPVAKLKKGLFECRLCNNKHRISQVHIPYAAKLLFQELASM 1205

Query: 443  NIAPRL 448
            NIA R+
Sbjct: 1206 NIAARM 1211


>gi|156065749|ref|XP_001598796.1| hypothetical protein SS1G_00885 [Sclerotinia sclerotiorum 1980]
 gi|154691744|gb|EDN91482.1| hypothetical protein SS1G_00885 [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 1267

 Score =  526 bits (1354), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 264/488 (54%), Positives = 333/488 (68%), Gaps = 85/488 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV++TNF VRMDT+A++LYYP KPL TTR                              
Sbjct: 819  MGVFLTNFDVRMDTMANILYYPQKPLATTR------------------------------ 848

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SME+L+FRELPAG N+IVAI+CY+GYNQEDSVI+N S+++RG FR
Sbjct: 849  ---------------SMEFLKFRELPAGQNAIVAIMCYSGYNQEDSVIMNQSSIDRGLFR 893

Query: 121  SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
            S+F+R+Y D E KRIG +  EQFEKP R     ++   Y+KLDDDGI+APG+RV+G D++
Sbjct: 894  SLFYRAYTDQE-KRIGMNVVEQFEKPYRSDTLKLKQGTYEKLDDDGIVAPGVRVTGADII 952

Query: 180  IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
            IGKT  +  + +E+   TK   KRD ST LR++E+G+VDQV+LT N +G +F K+R+R+ 
Sbjct: 953  IGKTAPIAPDSEEMGQRTKAHVKRDASTPLRSTESGLVDQVLLTTNAEGLRFVKVRMRTT 1012

Query: 240  RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
            +IPQIGDKFASRHGQKGT GI Y Q+                                  
Sbjct: 1013 KIPQIGDKFASRHGQKGTIGITYMQQDMPFTREGVVPDLIINPHAIPSRMTIAHLIECQL 1072

Query: 266  --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
              VSS +G  GDATPF + V V  +S LL+ +GY  RG E+M++GHTGRK+ AQVFLGPT
Sbjct: 1073 SKVSSLRGLEGDATPFTE-VTVDSVSKLLRAHGYHSRGFEIMYHGHTGRKMMAQVFLGPT 1131

Query: 324  YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRER 383
            YYQRL+HMVDDKIH+RARGPVQIL RQP+EGRARDGGLRFGEMERDC ISHGA+ FL+ER
Sbjct: 1132 YYQRLRHMVDDKIHARARGPVQILTRQPVEGRARDGGLRFGEMERDCMISHGASAFLKER 1191

Query: 384  LFEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSM 442
            LFEVSD +R+H+C+ CGL+  IA +   +FEC+ CKNKT+ISQ+ +PYAAKLLFQEL +M
Sbjct: 1192 LFEVSDAFRVHICDICGLMTPIAKINTGSFECRPCKNKTKISQIHIPYAAKLLFQELAAM 1251

Query: 443  NIAPRLMV 450
            NIA R+  
Sbjct: 1252 NIATRMFT 1259


>gi|402077539|gb|EJT72888.1| hypothetical protein GGTG_09739 [Gaeumannomyces graminis var. tritici
            R3-111a-1]
          Length = 1278

 Score =  526 bits (1354), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 266/488 (54%), Positives = 331/488 (67%), Gaps = 85/488 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG ++TN++ RMDT+A++LYYP KPL                                  
Sbjct: 830  MGFFLTNYNKRMDTMANILYYPQKPL---------------------------------- 855

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                       G  RSMEYL+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 856  -----------GITRSMEYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 904

Query: 121  SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
            S+FFRSY DAE KR+G +  E+FEKP RQ    ++   YDKL+DDGI+APG RVSG+D++
Sbjct: 905  SLFFRSYTDAE-KRVGINLVEKFEKPYRQDTLRLKQGTYDKLEDDGIVAPGTRVSGEDII 963

Query: 180  IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
            IGKT  +  +  EL   T +  KRD ST LR++E+GIVDQV+LT N DG K+ K+RVR+ 
Sbjct: 964  IGKTAPIQPDNQELGQRTVQHVKRDASTPLRSTESGIVDQVILTTNQDGLKYVKVRVRTT 1023

Query: 240  RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
            +IPQIGDKFASRHGQKGT G+ YR E                                  
Sbjct: 1024 KIPQIGDKFASRHGQKGTIGVTYRHEDMPFTREGITPDIIINPHAIPSRMTIAHLIECLL 1083

Query: 266  --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
              V++ KG  GDATPF + V V  +S LL+EY YQ RG EV+++GHTGRK+ AQVF GPT
Sbjct: 1084 SKVATIKGFEGDATPFTE-VTVDSVSKLLREYDYQSRGFEVLYHGHTGRKLRAQVFFGPT 1142

Query: 324  YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRER 383
            YYQRL+HMVDDKIH+RARGP+QI+ RQP+EGRARDGGLRFGEMERDC I+HGAA FL+ER
Sbjct: 1143 YYQRLRHMVDDKIHARARGPLQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKER 1202

Query: 384  LFEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSM 442
            LFEVSD +R+H+C  CGL+  IA++   TFEC+ CKNKT+I+QV +PYAAKLLFQEL +M
Sbjct: 1203 LFEVSDAFRVHICEICGLMTPIADLTKGTFECRPCKNKTKIAQVHIPYAAKLLFQELAAM 1262

Query: 443  NIAPRLMV 450
            NIA R+  
Sbjct: 1263 NIATRMFT 1270


>gi|347828662|emb|CCD44359.1| RPB2, DNA-dependent RNA polymerase II second largest subunit
            [Botryotinia fuckeliana]
          Length = 1260

 Score =  526 bits (1354), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 263/488 (53%), Positives = 333/488 (68%), Gaps = 85/488 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV++TNF VRMDT+A++LYYP KPL TTR                              
Sbjct: 812  MGVFLTNFDVRMDTMANILYYPQKPLATTR------------------------------ 841

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SME+L+FRELPAG N+IVAI+CY+GYNQEDSVI+N S+++RG FR
Sbjct: 842  ---------------SMEFLKFRELPAGQNAIVAIMCYSGYNQEDSVIMNQSSIDRGLFR 886

Query: 121  SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
            S+F+R+Y D E KRIG +  EQFEKP R     ++   YDKLDDDGI+APG+RV+G D++
Sbjct: 887  SLFYRAYTDQE-KRIGMNVVEQFEKPYRSDTLKLKQGTYDKLDDDGIVAPGVRVTGADII 945

Query: 180  IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
            IGKT  +  + +E+   TK   KRD ST LR++E+G+VDQV++T N +G +F K+R+R+ 
Sbjct: 946  IGKTAPIAPDSEEMGQRTKAHVKRDASTPLRSTESGLVDQVLITTNAEGLRFVKVRMRTT 1005

Query: 240  RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
            +IPQIGDKFASRHGQKGT GI Y Q+                                  
Sbjct: 1006 KIPQIGDKFASRHGQKGTIGITYMQQDMPFTREGVVPDLIINPHAIPSRMTIAHLIECQL 1065

Query: 266  --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
              VS+ +G  GDATPF + V V  +S LL+ +GY  RG E+M++GHTGRK+ AQVFLGPT
Sbjct: 1066 SKVSTLRGLEGDATPFTE-VTVDSVSKLLRAHGYHSRGFEIMYHGHTGRKMMAQVFLGPT 1124

Query: 324  YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRER 383
            YYQRL+HMVDDKIH+RARGPVQIL RQP+EGRARDGGLRFGEMERDC ISHGA+ FL+ER
Sbjct: 1125 YYQRLRHMVDDKIHARARGPVQILTRQPVEGRARDGGLRFGEMERDCMISHGASAFLKER 1184

Query: 384  LFEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSM 442
            LFEVSD +R+H+C+ CGL+  IA +   +FEC+ CKNKT+ISQ+ +PYAAKLLFQEL +M
Sbjct: 1185 LFEVSDAFRVHICDICGLMTPIAKINTGSFECRPCKNKTKISQIHIPYAAKLLFQELAAM 1244

Query: 443  NIAPRLMV 450
            NIA R+  
Sbjct: 1245 NIATRMFT 1252


>gi|6606113|gb|AAF19069.1|AF107797_1 DNA-dependent RNA polymerase II RPB140 [Capronia mansonii]
          Length = 1029

 Score =  525 bits (1353), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 260/485 (53%), Positives = 329/485 (67%), Gaps = 83/485 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV++TNF  RM+T+A++LYYP KPL  T +M+                           
Sbjct: 585  MGVFLTNFDQRMETMANILYYPQKPLARTMAMD--------------------------- 617

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                              YL+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 618  ------------------YLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 659

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+F+R+Y+D+E        EQFEKP R     +++  YDK+D+DGI+APG+RVSG+D+++
Sbjct: 660  SLFYRTYQDSEKSVGHSVVEQFEKPTRSDTLRLKHGTYDKIDEDGIVAPGVRVSGEDIIM 719

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  +  + +EL    K+  KRD ST LR++E+GIVDQVMLT   +G++F K+RVR+ +
Sbjct: 720  GKTAPMAPDAEELGQRLKQHIKRDVSTPLRSTESGIVDQVMLTTTAEGHRFAKVRVRTTK 779

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            +PQIGDKFASRHGQKGT GI YR E                                   
Sbjct: 780  VPQIGDKFASRHGQKGTIGITYRHEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQLS 839

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             V++ +G+ GDATPF   V V ++S LL+  GYQ RG EVM+NGHTGRK+ AQVFLGPTY
Sbjct: 840  KVATLRGDEGDATPFT-KVTVTQVSELLRTMGYQSRGFEVMYNGHTGRKMVAQVFLGPTY 898

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRL+HMVDDKIHSRARGP QIL RQP+EGRARDGGLRFGEMERDC I+HGA+ FL+ERL
Sbjct: 899  YQRLRHMVDDKIHSRARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASSFLKERL 958

Query: 385  FEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMN 443
            F+VSDP+R+HVC+ CGL+  IA ++ NTFECK C NK +ISQ+ LPYAAKLLFQEL +MN
Sbjct: 959  FDVSDPFRVHVCDICGLMTVIAKLKKNTFECKNCNNKNKISQIYLPYAAKLLFQELWAMN 1018

Query: 444  IAPRL 448
            IA RL
Sbjct: 1019 IAARL 1023


>gi|389626335|ref|XP_003710821.1| DNA-directed RNA polymerase II subunit RPB2 [Magnaporthe oryzae
            70-15]
 gi|351650350|gb|EHA58209.1| DNA-directed RNA polymerase II subunit RPB2 [Magnaporthe oryzae
            70-15]
 gi|440465319|gb|ELQ34645.1| DNA-directed RNA polymerase II subunit RPB2 [Magnaporthe oryzae Y34]
 gi|440478473|gb|ELQ59304.1| DNA-directed RNA polymerase II subunit RPB2 [Magnaporthe oryzae P131]
          Length = 1276

 Score =  525 bits (1352), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 265/488 (54%), Positives = 331/488 (67%), Gaps = 85/488 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG ++TN++ RMDT+A++LYYP KPL TTR                              
Sbjct: 828  MGFFLTNYNRRMDTMANILYYPQKPLGTTR------------------------------ 857

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYL+FRELPAG N+IVAI CY+GYNQEDSVI+N S ++RG FR
Sbjct: 858  ---------------SMEYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSTIDRGLFR 902

Query: 121  SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
            S+FFRSY D+E KR+G +  E+FEKP R     ++   YDKL+DDGI+APG RVSG+D++
Sbjct: 903  SLFFRSYTDSE-KRVGINMVEKFEKPFRADTLRLKQGTYDKLEDDGIVAPGTRVSGEDII 961

Query: 180  IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
            IGKT  +P +  EL   T + +KRD ST LR++E+GIVDQV++T N DG K+ K+RVR+ 
Sbjct: 962  IGKTAPIPADNQELGQRTVQHTKRDASTPLRSTESGIVDQVIVTTNQDGLKYVKVRVRTT 1021

Query: 240  RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
            +IPQIGDKFASRHGQKGT G+ YR E                                  
Sbjct: 1022 KIPQIGDKFASRHGQKGTIGVTYRHEDMPFTREGITPDIIINPHAIPSRMTIAHLIECLL 1081

Query: 266  --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
              V++ KG  GDATPF + V V  +S LL+E+GYQ RG EV+++GHTGRK+ AQVF GPT
Sbjct: 1082 SKVATLKGMEGDATPFTE-VTVDSVSNLLREHGYQSRGFEVLYHGHTGRKLRAQVFFGPT 1140

Query: 324  YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRER 383
            YYQRL+HMVDDKIH+RARGPV I+ RQP+EGRARDGGLRFGEMERDC I+HGAA FL+ER
Sbjct: 1141 YYQRLRHMVDDKIHARARGPVNIMTRQPVEGRARDGGLRFGEMERDCMIAHGAASFLKER 1200

Query: 384  LFEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSM 442
            LFEVSD +R H+C  CGL+  IA++   TFEC+ C+NKT+I+QV +PYAAKLLFQEL SM
Sbjct: 1201 LFEVSDAFRAHICGICGLMTPIADLTRKTFECRPCRNKTKIAQVHIPYAAKLLFQELASM 1260

Query: 443  NIAPRLMV 450
            NIA R+  
Sbjct: 1261 NIATRMFT 1268


>gi|315041535|ref|XP_003170144.1| DNA-directed RNA polymerase [Arthroderma gypseum CBS 118893]
 gi|311345178|gb|EFR04381.1| DNA-directed RNA polymerase [Arthroderma gypseum CBS 118893]
          Length = 1258

 Score =  525 bits (1351), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 265/486 (54%), Positives = 333/486 (68%), Gaps = 85/486 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV++TNF  RM+T+A++LYYP KPL TTR                              
Sbjct: 810  MGVFLTNFEQRMETMANILYYPQKPLATTR------------------------------ 839

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 840  ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 884

Query: 121  SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
            S+F+R+Y D+E K IG    E+FEKP R     M++  YDK+DDDGI++PG+RVSG+D++
Sbjct: 885  SLFYRTYTDSE-KMIGLTVVERFEKPMRSDTLRMKHGTYDKVDDDGIVSPGVRVSGEDII 943

Query: 180  IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
            IGKT  L    +EL   TK+ +K D ST LR++E+GIVDQV+++ + D  KF K+R+R+ 
Sbjct: 944  IGKTSPLAPEAEELGQRTKQHTKLDVSTPLRSTESGIVDQVLVSTSNDDLKFVKVRMRTT 1003

Query: 240  RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
            +IPQIGDKFASRHGQKGT GI YR E                                  
Sbjct: 1004 KIPQIGDKFASRHGQKGTIGITYRHEDMPFTREGVTPDLIINPHAIPSRMTIAHLIECQL 1063

Query: 266  --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
              VSS +G  GDATPF D V V  +S+LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 1064 SKVSSLRGYEGDATPFTD-VTVDSVSSLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 1122

Query: 324  YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRER 383
            YYQRL+HMVDDKIH+RARGP QIL RQP+EGRARDGGLRFGEMERDC I+HGA+ FL+ER
Sbjct: 1123 YYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASSFLKER 1182

Query: 384  LFEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSM 442
            LF+VSDP+R+H+C+ CGL+  IA ++   FEC+ C+NK +ISQV +PYAAKLLFQEL SM
Sbjct: 1183 LFDVSDPFRVHICDICGLMTPIAKVKKGDFECRACRNKNKISQVHIPYAAKLLFQELASM 1242

Query: 443  NIAPRL 448
            NIA R+
Sbjct: 1243 NIAARM 1248


>gi|134079870|emb|CAK41002.1| unnamed protein product [Aspergillus niger]
 gi|350637591|gb|EHA25948.1| hypothetical protein ASPNIDRAFT_54460 [Aspergillus niger ATCC 1015]
          Length = 1256

 Score =  525 bits (1351), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 270/486 (55%), Positives = 330/486 (67%), Gaps = 85/486 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV++TNF  RM+T+A++LYYP KPL TTR                              
Sbjct: 808  MGVFLTNFDQRMETMANILYYPQKPLATTR------------------------------ 837

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SME+LRFRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 838  ---------------SMEFLRFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 882

Query: 121  SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
            S+F+R+Y D+E K +G    E+FEKP R    GMR   YDKLD+DGIIAPG+RVSG+D++
Sbjct: 883  SLFYRTYTDSE-KMVGLTVVERFEKPMRSDTIGMRKGTYDKLDEDGIIAPGVRVSGEDII 941

Query: 180  IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
            IGKT  L    +EL   TK  +K D ST LR++E GIVDQV+++ + D  KF K+R+R+ 
Sbjct: 942  IGKTAPLAPEAEELGQRTKAHTKLDVSTPLRSTENGIVDQVLVSTSNDDLKFVKVRMRTT 1001

Query: 240  RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
            +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 1002 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTREGVCPDLIINPHAIPSRMTIAHLIECQL 1061

Query: 266  --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
              VSS +G  GDATPF D V V  IS LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 1062 SKVSSLRGFEGDATPFTD-VTVDSISRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 1120

Query: 324  YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRER 383
            YYQRL+HMVDDKIH+RARGP QIL RQP+EGRARDGGLRFGEMERDC I+HGA+ FL+ER
Sbjct: 1121 YYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKER 1180

Query: 384  LFEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSM 442
            LF+VSDP+R+H+C+ CGL+  +A ++   FEC+ C NK +ISQV +PYAAKLLFQEL SM
Sbjct: 1181 LFDVSDPFRVHICDDCGLMTPVAKLKKGLFECRLCNNKHRISQVHIPYAAKLLFQELASM 1240

Query: 443  NIAPRL 448
            NIA R+
Sbjct: 1241 NIAARM 1246


>gi|400592641|gb|EJP60759.1| DNA-dependent RNA polymerase II beta subunit [Beauveria bassiana
            ARSEF 2860]
          Length = 1261

 Score =  525 bits (1351), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 264/488 (54%), Positives = 330/488 (67%), Gaps = 85/488 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG ++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 813  MGFFLTNYSRRMDTMANILYYPQKPLATTR------------------------------ 842

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 843  ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 887

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+FFRSY D E K   +  E FEKP  Q+   M++  YDKLD+DGI+APG+RVSG+D++I
Sbjct: 888  SLFFRSYSDQEKKVGLNYTEIFEKPFHQSTLRMKHGTYDKLDEDGIVAPGVRVSGEDIII 947

Query: 181  GKTITL-PENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
            GKT  + PE +D L   T    +RD ST LR++E GIVDQV++T+N D  K+ K+RVR+ 
Sbjct: 948  GKTAPIDPETQD-LGARTTAHQRRDISTPLRSTENGIVDQVIVTVNADNVKYVKVRVRTT 1006

Query: 240  RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
            +IPQIGDKFASRHGQKGT G+ YRQE                                  
Sbjct: 1007 KIPQIGDKFASRHGQKGTIGVTYRQEDMPFTREGVTPDIIINPHAIPSRMTIAHLIECLL 1066

Query: 266  --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
              VS+ +G  GDATPF D V V  +S LL+++GYQ RG E+M+NGHTG+K+ AQVF GPT
Sbjct: 1067 SKVSTLEGMEGDATPFTD-VTVDSVSDLLRKHGYQSRGFEIMYNGHTGKKLRAQVFFGPT 1125

Query: 324  YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRER 383
            YYQRL+HMVDDKIH+RARGPVQI+ RQP+EGRARDGGLRFGEMERDC I+HGAA FL+ER
Sbjct: 1126 YYQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKER 1185

Query: 384  LFEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSM 442
            LFEVSD +R+H+C  CGL+  IAN+   +FEC+ CKNKT+I+Q+ +PYAAKLLFQEL SM
Sbjct: 1186 LFEVSDAFRVHICEICGLMTPIANLSKQSFECRPCKNKTKIAQIHIPYAAKLLFQELQSM 1245

Query: 443  NIAPRLMV 450
            NIA R+  
Sbjct: 1246 NIAARMFT 1253


>gi|326475036|gb|EGD99045.1| DNA-dependent RNA polymerase II RPB140 [Trichophyton tonsurans CBS
            112818]
          Length = 1258

 Score =  525 bits (1351), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 265/486 (54%), Positives = 333/486 (68%), Gaps = 85/486 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV++TNF  RM+T+A++LYYP KPL TTR                              
Sbjct: 810  MGVFLTNFEQRMETMANILYYPQKPLATTR------------------------------ 839

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 840  ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 884

Query: 121  SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
            S+F+R+Y D+E K IG    E+FEKP R     M++  YDK+DDDGI++PG+RVSG+D++
Sbjct: 885  SLFYRTYTDSE-KMIGLTVVERFEKPMRSDTLRMKHGTYDKVDDDGIVSPGVRVSGEDII 943

Query: 180  IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
            IGKT  L    +EL   TK+ +K D ST LR++E+GIVDQV+++ + D  KF K+R+R+ 
Sbjct: 944  IGKTSPLAPEAEELGQRTKQHTKLDVSTPLRSTESGIVDQVLVSTSNDDLKFVKVRMRTT 1003

Query: 240  RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
            +IPQIGDKFASRHGQKGT GI YR E                                  
Sbjct: 1004 KIPQIGDKFASRHGQKGTIGITYRHEDMPFTREGITPDLIINPHAIPSRMTIAHLIECQL 1063

Query: 266  --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
              VSS +G  GDATPF D V V  +S+LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 1064 SKVSSLRGYEGDATPFTD-VTVDSVSSLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 1122

Query: 324  YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRER 383
            YYQRL+HMVDDKIH+RARGP QIL RQP+EGRARDGGLRFGEMERDC I+HGA+ FL+ER
Sbjct: 1123 YYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASSFLKER 1182

Query: 384  LFEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSM 442
            LF+VSDP+R+H+C+ CGL+  IA ++   FEC+ C+NK +ISQV +PYAAKLLFQEL SM
Sbjct: 1183 LFDVSDPFRVHICDICGLMTPIAKVKKGDFECRACRNKNKISQVHIPYAAKLLFQELASM 1242

Query: 443  NIAPRL 448
            NIA R+
Sbjct: 1243 NIAARM 1248


>gi|358374560|dbj|GAA91151.1| DNA-directed RNA polymerase II 138 kDa polypeptide [Aspergillus
            kawachii IFO 4308]
          Length = 1256

 Score =  525 bits (1351), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 270/486 (55%), Positives = 330/486 (67%), Gaps = 85/486 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV++TNF  RM+T+A++LYYP KPL TTR                              
Sbjct: 808  MGVFLTNFDQRMETMANILYYPQKPLATTR------------------------------ 837

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SME+LRFRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 838  ---------------SMEFLRFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 882

Query: 121  SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
            S+F+R+Y D+E K +G    E+FEKP R    GMR   YDKLD+DGIIAPG+RVSG+D++
Sbjct: 883  SLFYRTYTDSE-KMVGLTVVERFEKPMRSDTIGMRKGTYDKLDEDGIIAPGVRVSGEDII 941

Query: 180  IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
            IGKT  L    +EL   TK  +K D ST LR++E GIVDQV+++ + D  KF K+R+R+ 
Sbjct: 942  IGKTAPLAPEAEELGQRTKAHTKLDVSTPLRSTENGIVDQVLVSTSNDDLKFVKVRMRTT 1001

Query: 240  RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
            +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 1002 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTREGVCPDLIINPHAIPSRMTIAHLIECQL 1061

Query: 266  --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
              VSS +G  GDATPF D V V  IS LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 1062 SKVSSLRGFEGDATPFTD-VTVDSISRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 1120

Query: 324  YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRER 383
            YYQRL+HMVDDKIH+RARGP QIL RQP+EGRARDGGLRFGEMERDC I+HGA+ FL+ER
Sbjct: 1121 YYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKER 1180

Query: 384  LFEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSM 442
            LF+VSDP+R+H+C+ CGL+  +A ++   FEC+ C NK +ISQV +PYAAKLLFQEL SM
Sbjct: 1181 LFDVSDPFRVHICDDCGLMTPVAKLKKGLFECRLCNNKHRISQVHIPYAAKLLFQELASM 1240

Query: 443  NIAPRL 448
            NIA R+
Sbjct: 1241 NIAARM 1246


>gi|120407526|gb|AAY82000.2| RNA polymerase II second largest subunit [Coleochaete scutata]
          Length = 702

 Score =  525 bits (1351), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 254/412 (61%), Positives = 307/412 (74%), Gaps = 40/412 (9%)

Query: 75  RSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFRSYKDAESKR 134
           R+ME+L FR+LPAG N+IV ILCY+GYNQEDSVI+N S+++RG+FRS+ +RSY+D E K+
Sbjct: 258 RAMEHLHFRQLPAGQNAIVGILCYSGYNQEDSVIMNQSSIDRGFFRSISYRSYRDEEKKQ 317

Query: 135 IGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENEDELE 194
               +E+FEKP+R+T  GMR+  YDKLDDDGI  PG RVS +DV+IGKT  LP++ +E  
Sbjct: 318 GSLVKEEFEKPSRETVMGMRHGSYDKLDDDGIAPPGTRVSAEDVIIGKTTPLPDDGNE-- 375

Query: 195 GTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQ 254
              +RF+KRD ST L++SE+G+VDQV+LT N  G +F K+RVRSVRIPQIGDKFASRHGQ
Sbjct: 376 -AARRFTKRDQSTSLKHSESGMVDQVLLTTNDQGLRFVKMRVRSVRIPQIGDKFASRHGQ 434

Query: 255 KGTCGIQYRQE------------------------------------VSSNKGEIGDATP 278
           KGT GI Y QE                                    V+++ G  GDATP
Sbjct: 435 KGTVGITYTQEDMPFTQEGIVPDIIVNPHAIPSRMTIGHLIECLLGKVATHIGREGDATP 494

Query: 279 FNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHS 338
           F D V V  IS  L + GYQ+RG E M+NGHTGRK+ AQ+FLGPTYYQRLKHMVDDKIHS
Sbjct: 495 FTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRKLQAQIFLGPTYYQRLKHMVDDKIHS 553

Query: 339 RARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNF 398
           RARGPVQIL RQP EGRA+DGGLRFGEMERDC I+HGAA F++ERLF+ SD YR+HVC  
Sbjct: 554 RARGPVQILTRQPAEGRAKDGGLRFGEMERDCMIAHGAAHFMKERLFDQSDAYRVHVCEI 613

Query: 399 CGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMV 450
           CGLIAIAN++  TFEC+GCKNKT I QV +PYA KLLFQELM+M IAPR+  
Sbjct: 614 CGLIAIANLKKGTFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMFT 665


>gi|326484701|gb|EGE08711.1| DNA-dependent RNA polymerase II RPB140 [Trichophyton equinum CBS
            127.97]
          Length = 1258

 Score =  525 bits (1351), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 265/486 (54%), Positives = 333/486 (68%), Gaps = 85/486 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV++TNF  RM+T+A++LYYP KPL TTR                              
Sbjct: 810  MGVFLTNFEQRMETMANILYYPQKPLATTR------------------------------ 839

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 840  ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 884

Query: 121  SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
            S+F+R+Y D+E K IG    E+FEKP R     M++  YDK+DDDGI++PG+RVSG+D++
Sbjct: 885  SLFYRTYTDSE-KMIGLTVVERFEKPMRSDTLRMKHGTYDKVDDDGIVSPGVRVSGEDII 943

Query: 180  IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
            IGKT  L    +EL   TK+ +K D ST LR++E+GIVDQV+++ + D  KF K+R+R+ 
Sbjct: 944  IGKTSPLAPEAEELGQRTKQHTKLDVSTPLRSTESGIVDQVLVSTSNDDLKFVKVRMRTT 1003

Query: 240  RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
            +IPQIGDKFASRHGQKGT GI YR E                                  
Sbjct: 1004 KIPQIGDKFASRHGQKGTIGITYRHEDMPFTREGITPDLIINPHAIPSRMTIAHLIECQL 1063

Query: 266  --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
              VSS +G  GDATPF D V V  +S+LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 1064 SKVSSLRGYEGDATPFTD-VTVDSVSSLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 1122

Query: 324  YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRER 383
            YYQRL+HMVDDKIH+RARGP QIL RQP+EGRARDGGLRFGEMERDC I+HGA+ FL+ER
Sbjct: 1123 YYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASSFLKER 1182

Query: 384  LFEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSM 442
            LF+VSDP+R+H+C+ CGL+  IA ++   FEC+ C+NK +ISQV +PYAAKLLFQEL SM
Sbjct: 1183 LFDVSDPFRVHICDICGLMTPIAKVKKGDFECRACRNKNKISQVHIPYAAKLLFQELASM 1242

Query: 443  NIAPRL 448
            NIA R+
Sbjct: 1243 NIAARM 1248


>gi|302892877|ref|XP_003045320.1| hypothetical protein NECHADRAFT_70495 [Nectria haematococca mpVI
            77-13-4]
 gi|256726245|gb|EEU39607.1| hypothetical protein NECHADRAFT_70495 [Nectria haematococca mpVI
            77-13-4]
          Length = 1261

 Score =  524 bits (1350), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 262/487 (53%), Positives = 328/487 (67%), Gaps = 83/487 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG ++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 813  MGFFLTNYSRRMDTMANILYYPQKPLATTR------------------------------ 842

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 843  ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 887

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+FFRSY D E K   +  E FEKP +Q+   M++  YDKLD+DGI+APG+RVSG+D++I
Sbjct: 888  SLFFRSYSDQEKKVGLNYTEVFEKPFQQSTLRMKHGTYDKLDEDGIVAPGVRVSGEDIII 947

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  + +   +L   T    +RD ST LR++E GIVD V++T+N D  K+ K+RVR+ +
Sbjct: 948  GKTAPIDQENQDLGTRTTVHQRRDISTPLRSTENGIVDSVIVTVNADNVKYVKVRVRTTK 1007

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGT G+ YRQE                                   
Sbjct: 1008 IPQIGDKFASRHGQKGTIGVTYRQEDMPFSREGVTPDIIINPHAIPSRMTIAHLIECLLS 1067

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+ +G  GDATPF D V V  +S LL+++GYQ RG E+M+NGHTGRK+ AQVF GPTY
Sbjct: 1068 KVSTLEGMEGDATPFTD-VTVDSVSELLRKHGYQSRGFEIMYNGHTGRKLRAQVFFGPTY 1126

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRL+HMVDDKIH+RARGPVQI+ RQP+EGRARDGGLRFGEMERDC I+HGAA FL+ERL
Sbjct: 1127 YQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERL 1186

Query: 385  FEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMN 443
            FEVSD +R+HVC  CGL+  IAN+   +FEC+ CKNKT+I+Q+ +PYAAKLLFQEL SMN
Sbjct: 1187 FEVSDAFRVHVCEVCGLMTPIANLSKQSFECRPCKNKTKIAQIHIPYAAKLLFQELQSMN 1246

Query: 444  IAPRLMV 450
            IA R+  
Sbjct: 1247 IAARMFT 1253


>gi|115385276|ref|XP_001209185.1| DNA-directed RNA polymerase II 138 kDa polypeptide [Aspergillus
            terreus NIH2624]
 gi|114196877|gb|EAU38577.1| DNA-directed RNA polymerase II 138 kDa polypeptide [Aspergillus
            terreus NIH2624]
          Length = 1256

 Score =  524 bits (1350), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 270/486 (55%), Positives = 331/486 (68%), Gaps = 85/486 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV++TNF  RM+T+A++LYYP KPL TTR                              
Sbjct: 808  MGVFLTNFDQRMETMANLLYYPQKPLATTR------------------------------ 837

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SME+LRFRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 838  ---------------SMEFLRFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 882

Query: 121  SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
            S+F+R+Y D+E K +G    E+FEKP R    GMR   YDKLD+DGIIAPG+RVSG+D++
Sbjct: 883  SLFYRTYTDSE-KMVGLTVVERFEKPMRSDTIGMRKGTYDKLDEDGIIAPGVRVSGEDII 941

Query: 180  IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
            IGKT  L    +EL   TK  +K D ST LR++E+GIVDQV+++ + D  KF K+R+R+ 
Sbjct: 942  IGKTAPLAPEAEELGQRTKAHTKLDVSTPLRSTESGIVDQVLVSTSNDDLKFVKVRMRTT 1001

Query: 240  RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
            +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 1002 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTREGVAPDLIINPHAIPSRMTIAHLIECQL 1061

Query: 266  --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
              VS+ +G  GDATPF D V V  IS LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 1062 SKVSALRGFEGDATPFTD-VTVDSISRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 1120

Query: 324  YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRER 383
            YYQRL+HMVDDKIH+RARGP QIL RQP+EGRARDGGLRFGEMERDC I+HGA+ FL+ER
Sbjct: 1121 YYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKER 1180

Query: 384  LFEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSM 442
            LF+VSDP+R+H+C+ CGL+  IA ++   FEC+ C NK +ISQV +PYAAKLLFQEL SM
Sbjct: 1181 LFDVSDPFRVHICDDCGLMTPIAKLKKGLFECRLCNNKHRISQVHIPYAAKLLFQELASM 1240

Query: 443  NIAPRL 448
            NIA R+
Sbjct: 1241 NIAARM 1246


>gi|317033268|ref|XP_001395161.2| DNA-directed RNA polymerase II subunit RPB2 [Aspergillus niger CBS
            513.88]
          Length = 1231

 Score =  524 bits (1350), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 270/486 (55%), Positives = 330/486 (67%), Gaps = 85/486 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV++TNF  RM+T+A++LYYP KPL TTR                              
Sbjct: 783  MGVFLTNFDQRMETMANILYYPQKPLATTR------------------------------ 812

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SME+LRFRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 813  ---------------SMEFLRFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 857

Query: 121  SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
            S+F+R+Y D+E K +G    E+FEKP R    GMR   YDKLD+DGIIAPG+RVSG+D++
Sbjct: 858  SLFYRTYTDSE-KMVGLTVVERFEKPMRSDTIGMRKGTYDKLDEDGIIAPGVRVSGEDII 916

Query: 180  IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
            IGKT  L    +EL   TK  +K D ST LR++E GIVDQV+++ + D  KF K+R+R+ 
Sbjct: 917  IGKTAPLAPEAEELGQRTKAHTKLDVSTPLRSTENGIVDQVLVSTSNDDLKFVKVRMRTT 976

Query: 240  RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
            +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 977  KIPQIGDKFASRHGQKGTIGITYRQEDMPFTREGVCPDLIINPHAIPSRMTIAHLIECQL 1036

Query: 266  --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
              VSS +G  GDATPF D V V  IS LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 1037 SKVSSLRGFEGDATPFTD-VTVDSISRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 1095

Query: 324  YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRER 383
            YYQRL+HMVDDKIH+RARGP QIL RQP+EGRARDGGLRFGEMERDC I+HGA+ FL+ER
Sbjct: 1096 YYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKER 1155

Query: 384  LFEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSM 442
            LF+VSDP+R+H+C+ CGL+  +A ++   FEC+ C NK +ISQV +PYAAKLLFQEL SM
Sbjct: 1156 LFDVSDPFRVHICDDCGLMTPVAKLKKGLFECRLCNNKHRISQVHIPYAAKLLFQELASM 1215

Query: 443  NIAPRL 448
            NIA R+
Sbjct: 1216 NIAARM 1221


>gi|413915214|gb|AFW21469.1| RNA polymerase II beta subunit [Balansia obtecta]
          Length = 1261

 Score =  524 bits (1350), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 261/487 (53%), Positives = 327/487 (67%), Gaps = 83/487 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG ++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 813  MGFFLTNYSRRMDTMANILYYPQKPLATTR------------------------------ 842

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 843  ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 887

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+FFRSY D E K   +  E FEKP  Q+   M++  YDKLD+DGI+APG+RVSG+D++I
Sbjct: 888  SLFFRSYSDQEKKVGLNYTEVFEKPFHQSTLRMKHGTYDKLDEDGIVAPGVRVSGEDIII 947

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  + +   +L   T    +RD ST LR++E GI+D V+LT+N D  K+ K+RVR+ +
Sbjct: 948  GKTAPIDQENQDLGTRTSVHQRRDISTPLRSTENGIIDSVILTVNADNVKYVKVRVRTTK 1007

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGT G+ YRQE                                   
Sbjct: 1008 IPQIGDKFASRHGQKGTIGVTYRQEDMPFTREGVTPDIIINPHAIPSRMTIAHLIECLLS 1067

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+ +G  GDATPF D V V  +S LL+++GYQ RG E+M+NGHTG+K+ AQVF GPTY
Sbjct: 1068 KVSTLEGMEGDATPFTD-VTVDSVSELLRKHGYQSRGFEIMYNGHTGKKLRAQVFFGPTY 1126

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRL+HMVDDKIH+RARGPVQI+ RQP+EGRARDGGLRFGEMERDC I+HGAA FL+ERL
Sbjct: 1127 YQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERL 1186

Query: 385  FEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMN 443
            FEVSD +R+HVC  CGL+  IAN+   +FEC+ CKNKT+I+Q+ +PYAAKLLFQEL SMN
Sbjct: 1187 FEVSDAFRVHVCEICGLMTPIANLSKQSFECRPCKNKTKIAQIHIPYAAKLLFQELQSMN 1246

Query: 444  IAPRLMV 450
            IA R+  
Sbjct: 1247 IAARMFT 1253


>gi|384245445|gb|EIE18939.1| RNA polymerase II second largest subunit [Coccomyxa subellipsoidea
            C-169]
          Length = 1170

 Score =  524 bits (1349), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 264/484 (54%), Positives = 319/484 (65%), Gaps = 85/484 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG+Y+TN+  RMDT A+VLYYP KPLVTTR+                             
Sbjct: 734  MGMYVTNYQTRMDTQAYVLYYPQKPLVTTRA----------------------------- 764

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                            ME+L FRELPAG N+IVAI CY+GYNQEDS+++N S+++RG+FR
Sbjct: 765  ----------------MEHLHFRELPAGQNTIVAIACYSGYNQEDSLMMNQSSIDRGFFR 808

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+FFR+Y+  E K+    +E  E P+R     MR+  YDKLDDDGI  PG RVSG+DV+I
Sbjct: 809  SMFFRTYRAEEKKQGSLVQEVIEVPDRSVTVAMRHGTYDKLDDDGIAPPGTRVSGEDVII 868

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  L    DE  G  +RFSK+D ST LRNSE+G++DQVM+T N +G +F KIRVRS+R
Sbjct: 869  GKTSPL---ADEQPGVAQRFSKKDVSTSLRNSESGMIDQVMVTTNAEGQRFVKIRVRSIR 925

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQ+GDKFASRHGQKGT G+ Y QE                                   
Sbjct: 926  IPQVGDKFASRHGQKGTIGMTYTQEDMPWTSEGIVPDLIINPHAIPSRMTIGHLVEALMS 985

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             V++  G+ GDATPF + V V  IS  L   GYQ RG E M+NGHTGR++ AQ+FL PTY
Sbjct: 986  KVAALVGKEGDATPFAE-VTVDNISAALHTCGYQSRGWETMYNGHTGRRLQAQIFLNPTY 1044

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSR RGPVQIL RQP+EGRARDGGLRFGEMERDC ISHG+A FL+ERL
Sbjct: 1045 YQRLKHMVDDKIHSRGRGPVQILTRQPVEGRARDGGLRFGEMERDCIISHGSAAFLKERL 1104

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            F+ SD YR+HVC+ CGL A+AN++ N F C  CKN T I QV +PYA KLLFQELM+M I
Sbjct: 1105 FDQSDAYRVHVCDRCGLFAVANLKKNQFHCPACKNTTGIVQVHMPYACKLLFQELMAMAI 1164

Query: 445  APRL 448
            APR+
Sbjct: 1165 APRM 1168


>gi|346320677|gb|EGX90277.1| DNA-directed RNA polymerase II polypeptide [Cordyceps militaris CM01]
          Length = 1261

 Score =  524 bits (1349), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 264/488 (54%), Positives = 330/488 (67%), Gaps = 85/488 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG ++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 813  MGFFLTNYSRRMDTMANILYYPQKPLATTR------------------------------ 842

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 843  ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 887

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+FFRSY D E K   +  E FEKP  Q+   M++  YDKLD+DGI+APG+RVSG+D++I
Sbjct: 888  SLFFRSYSDQEKKVGLNYTEIFEKPFHQSTLRMKHGTYDKLDEDGIVAPGVRVSGEDIII 947

Query: 181  GKTITL-PENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
            GKT  + PE +D L   T    +RD ST LR++E GIVDQV++T+N D  K+ K+RVR+ 
Sbjct: 948  GKTAPIDPETQD-LGTRTTAHQRRDISTPLRSTENGIVDQVIVTVNADNVKYVKVRVRTT 1006

Query: 240  RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
            +IPQIGDKFASRHGQKGT G+ YRQE                                  
Sbjct: 1007 KIPQIGDKFASRHGQKGTIGVTYRQEDMPFTREGVTPDIIINPHAIPSRMTIAHLIECLL 1066

Query: 266  --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
              VS+ +G  GDATPF D V V  +S LL+++GYQ RG E+M+NGHTG+K+ AQVF GPT
Sbjct: 1067 SKVSTLEGMEGDATPFTD-VTVDSVSDLLRKHGYQSRGFEIMYNGHTGKKLRAQVFFGPT 1125

Query: 324  YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRER 383
            YYQRL+HMVDDKIH+RARGPVQI+ RQP+EGRARDGGLRFGEMERDC I+HGAA FL+ER
Sbjct: 1126 YYQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKER 1185

Query: 384  LFEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSM 442
            LFEVSD +R+H+C  CGL+  IAN+   +FEC+ CKNKT+I+Q+ +PYAAKLLFQEL SM
Sbjct: 1186 LFEVSDAFRVHICEICGLMTPIANLSKQSFECRPCKNKTKIAQIHIPYAAKLLFQELQSM 1245

Query: 443  NIAPRLMV 450
            NIA R+  
Sbjct: 1246 NIAARMFT 1253


>gi|296818239|ref|XP_002849456.1| DNA-dependent RNA polymerase II RPB140 [Arthroderma otae CBS 113480]
 gi|238839909|gb|EEQ29571.1| DNA-dependent RNA polymerase II RPB140 [Arthroderma otae CBS 113480]
          Length = 1258

 Score =  524 bits (1349), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 264/486 (54%), Positives = 333/486 (68%), Gaps = 85/486 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV++TNF  RM+T+A++LYYP KPL TTR                              
Sbjct: 810  MGVFLTNFEQRMETMANILYYPQKPLATTR------------------------------ 839

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 840  ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 884

Query: 121  SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
            S+F+R+Y D+E K +G    E+FEKP R     M++  YDK+DDDGI++PG+RVSG+D++
Sbjct: 885  SLFYRTYTDSE-KMVGLTVVERFEKPMRSDTLRMKHGTYDKVDDDGIVSPGVRVSGEDII 943

Query: 180  IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
            IGKT  L    +EL   TK+ +K D ST LR++E+GIVDQV+++ + D  KF K+R+R+ 
Sbjct: 944  IGKTSPLAPEAEELGQRTKQHTKLDVSTPLRSTESGIVDQVLVSTSNDDLKFVKVRMRTT 1003

Query: 240  RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
            +IPQIGDKFASRHGQKGT GI YR E                                  
Sbjct: 1004 KIPQIGDKFASRHGQKGTIGITYRHEDMPFTREGVTPDLIINPHAIPSRMTIAHLIECQL 1063

Query: 266  --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
              VSS +G  GDATPF D V V  +S+LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 1064 SKVSSLRGYEGDATPFTD-VTVDSVSSLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 1122

Query: 324  YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRER 383
            YYQRL+HMVDDKIH+RARGP QIL RQP+EGRARDGGLRFGEMERDC I+HGA+ FL+ER
Sbjct: 1123 YYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASSFLKER 1182

Query: 384  LFEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSM 442
            LF+VSDP+R+H+C+ CGL+  IA ++   FEC+ C+NK +ISQV +PYAAKLLFQEL SM
Sbjct: 1183 LFDVSDPFRVHICDICGLMTPIAKVKKGDFECRACRNKNKISQVHIPYAAKLLFQELASM 1242

Query: 443  NIAPRL 448
            NIA R+
Sbjct: 1243 NIAARM 1248


>gi|413915216|gb|AFW21470.1| RNA polymerase II beta subunit [Neotyphodium aotearoae]
          Length = 1261

 Score =  523 bits (1348), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 260/487 (53%), Positives = 327/487 (67%), Gaps = 83/487 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG ++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 813  MGFFLTNYSRRMDTMANILYYPQKPLATTR------------------------------ 842

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 843  ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 887

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+FFRSY D E K   +  E FEKP  Q+   M++  YDKLD+DGI+APG+RVSG+D++I
Sbjct: 888  SLFFRSYSDQEKKVGLNYTEVFEKPFHQSTLRMKHGTYDKLDEDGIVAPGVRVSGEDIII 947

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  + +   +L   T    +RD ST LR++E GI+D V+LT+N D  K+ K+RVR+ +
Sbjct: 948  GKTAPIDQENQDLGTRTTVHQRRDISTPLRSTENGIIDSVILTVNADNVKYVKVRVRTTK 1007

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            +PQIGDKFASRHGQKGT G+ YRQE                                   
Sbjct: 1008 VPQIGDKFASRHGQKGTIGVTYRQEDMPFTREGVTPDIIINPHAIPSRMTIAHLIECLLS 1067

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+ +G  GDATPF D V V  +S LL+++GYQ RG E+M+NGHTG+K+ AQVF GPTY
Sbjct: 1068 KVSTLEGMEGDATPFTD-VTVDSVSELLRKHGYQSRGFEIMYNGHTGKKLRAQVFFGPTY 1126

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRL+HMVDDKIH+RARGPVQI+ RQP+EGRARDGGLRFGEMERDC I+HGAA FL+ERL
Sbjct: 1127 YQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERL 1186

Query: 385  FEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMN 443
            FEVSD +R+HVC  CGL+  IAN+   +FEC+ CKNKT+I+Q+ +PYAAKLLFQEL SMN
Sbjct: 1187 FEVSDAFRVHVCEICGLMTPIANLSKQSFECRPCKNKTKIAQIHIPYAAKLLFQELQSMN 1246

Query: 444  IAPRLMV 450
            IA R+  
Sbjct: 1247 IAARMFT 1253


>gi|325186944|emb|CCA21488.1| PREDICTED: hypothetical protein [Albugo laibachii Nc14]
          Length = 1234

 Score =  523 bits (1348), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 265/497 (53%), Positives = 322/497 (64%), Gaps = 94/497 (18%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVY +NF  RMDT+A+VL YP KPLVTTR+                             
Sbjct: 771  MGVYCSNFRARMDTMANVLNYPQKPLVTTRA----------------------------- 801

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                            ME+L FRELP+GIN+IV I  YTGYNQEDS+I+N SA++RG FR
Sbjct: 802  ----------------MEFLHFRELPSGINAIVGIASYTGYNQEDSLIMNQSAIDRGLFR 845

Query: 121  SVFFRSYKDAESKR----------IGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPG 170
            S F+R Y D E  +          +    E+FEKP+R  C G+R+  Y KLD DG++APG
Sbjct: 846  STFYRCYVDQERNKSPHGGSAATALVSNCEEFEKPSRDNCLGLRHGSYHKLDADGLVAPG 905

Query: 171  LRVSGDDVVIGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYK 230
             RVSG+D++IGKT  LP +ED      +R  KRD ST LR+ E GI+D VMLT N DG+K
Sbjct: 906  TRVSGNDIIIGKTSPLPVSEDS--SLEQRHQKRDASTSLRSHENGIIDSVMLTTNADGFK 963

Query: 231  FCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQE------------------------- 265
            F K+R R++RIPQIGDKFASRHGQKGT G+ YRQE                         
Sbjct: 964  FTKVRFRNIRIPQIGDKFASRHGQKGTIGMTYRQEDMPFTLEGITPDIIVNPHAIPSRMT 1023

Query: 266  -----------VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKI 314
                       VSS  G+ GDATPF D V VQ I+  L   GYQ  GNEV+++GHTGR +
Sbjct: 1024 VGHLIECLLGKVSSQTGDEGDATPFTD-VTVQAIADTLHNLGYQRHGNEVLYSGHTGRPL 1082

Query: 315  NAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISH 374
             AQ+F+GPT+YQRLKHMVDDKIHSR+RGPV +L RQPMEGRAR+GGLR GEMERDC ISH
Sbjct: 1083 TAQIFIGPTFYQRLKHMVDDKIHSRSRGPVTMLTRQPMEGRAREGGLRMGEMERDCLISH 1142

Query: 375  GAAQFLRERLFEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKL 434
            G+A FL +RLF  SD YR+HVC+ CG+IAIAN+R  TFEC+ C+NKTQISQ+ +PY+ KL
Sbjct: 1143 GSANFLMDRLFANSDAYRVHVCDICGIIAIANLRKMTFECRNCRNKTQISQLHIPYSCKL 1202

Query: 435  LFQELMSMNIAPRLMVV 451
            LFQELMSM+IAPRL  +
Sbjct: 1203 LFQELMSMSIAPRLFTL 1219


>gi|453086391|gb|EMF14433.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
            [Mycosphaerella populorum SO2202]
          Length = 1260

 Score =  523 bits (1347), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 263/486 (54%), Positives = 327/486 (67%), Gaps = 85/486 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV +TN++VRMDT+A+VLYYP KPL TTR                              
Sbjct: 812  MGVTLTNYNVRMDTMANVLYYPQKPLATTR------------------------------ 841

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SME+LRFR+LPAG N+IVAI  Y+GYNQEDSVI+N S+++RG FR
Sbjct: 842  ---------------SMEFLRFRDLPAGQNAIVAIATYSGYNQEDSVIMNQSSIDRGLFR 886

Query: 121  SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
            S+FFR+Y D E KR+G    E FEKP R     M+   YDKLDDDGI+APG RVSGDD++
Sbjct: 887  SLFFRAYMDQE-KRVGMSVVEAFEKPTRSDTMRMKQGSYDKLDDDGIVAPGARVSGDDII 945

Query: 180  IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
            IGKT  +P + +EL   TK   KRD ST LR++E G++DQV+LT N +G +F K+R R  
Sbjct: 946  IGKTAPMPPDAEELGQRTKLHVKRDVSTPLRSTENGLIDQVLLTTNTEGLRFVKVRTRVT 1005

Query: 240  RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
            ++PQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 1006 KVPQIGDKFASRHGQKGTIGITYRQEDMPFSADGLTPDIIINPHAIPSRMTIAHLIECLL 1065

Query: 266  --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
              V + +G+ GDATPF D V V  +S +L   G+Q RG EVM+NGHTG+K+NAQVFLGPT
Sbjct: 1066 SKVGALQGQEGDATPFTD-VTVTSVSQILAAAGFQQRGFEVMYNGHTGKKLNAQVFLGPT 1124

Query: 324  YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRER 383
            YYQRL+HMVDDKIH+RARGP+QIL RQP+EGRARDGGLRFGEMERDC I+HGA+ FL+ER
Sbjct: 1125 YYQRLRHMVDDKIHARARGPLQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKER 1184

Query: 384  LFEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSM 442
            L +VSD +R+H+C  CGL+  IA+++   FEC+ CKNKT+I+QV +PYAAKLLFQEL +M
Sbjct: 1185 LLDVSDAFRVHICEICGLMTPIASIKKQQFECRPCKNKTKIAQVIIPYAAKLLFQELAAM 1244

Query: 443  NIAPRL 448
            N+A R+
Sbjct: 1245 NVATRM 1250


>gi|70982424|ref|XP_746740.1| DNA-dependent RNA polymerase II RPB140 [Aspergillus fumigatus Af293]
 gi|66844364|gb|EAL84702.1| DNA-dependent RNA polymerase II RPB140 [Aspergillus fumigatus Af293]
 gi|159123019|gb|EDP48139.1| DNA-dependent RNA polymerase II RPB140 [Aspergillus fumigatus A1163]
          Length = 1255

 Score =  523 bits (1347), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 269/486 (55%), Positives = 330/486 (67%), Gaps = 85/486 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV++TNF  RM+T+A++LYYP KPL TTR                              
Sbjct: 807  MGVFLTNFDQRMETMANILYYPQKPLATTR------------------------------ 836

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SME+LRFRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 837  ---------------SMEFLRFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 881

Query: 121  SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
            S+F+R+Y D+E K +G    E+FEKP R    GMR   YDKLD+DGIIAPG+RVSG+D++
Sbjct: 882  SLFYRTYTDSE-KMVGLTVVERFEKPMRSDTIGMRKGTYDKLDEDGIIAPGVRVSGEDII 940

Query: 180  IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
            IGKT  L    +EL   TK  +K D ST LR++E GIVDQV+++ + D  KF K+R+R+ 
Sbjct: 941  IGKTAPLAPEAEELGQRTKAHTKLDVSTPLRSTENGIVDQVLVSTSNDDLKFVKVRMRTT 1000

Query: 240  RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
            +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 1001 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTREGVSPDLIINPHAIPSRMTIAHLIECQL 1060

Query: 266  --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
              VS+ +G  GDATPF D V V  IS LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 1061 SKVSALRGFEGDATPFTD-VTVDSISRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 1119

Query: 324  YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRER 383
            YYQRL+HMVDDKIH+RARGP QIL RQP+EGRARDGGLRFGEMERDC I+HGA+ FL+ER
Sbjct: 1120 YYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKER 1179

Query: 384  LFEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSM 442
            LF+VSDP+R+H+C+ CGL+  IA ++   FEC+ C NK +ISQV +PYAAKLLFQEL +M
Sbjct: 1180 LFDVSDPFRVHICDDCGLMTPIAKLKKGLFECRLCNNKHRISQVHIPYAAKLLFQELAAM 1239

Query: 443  NIAPRL 448
            NIA R+
Sbjct: 1240 NIAARM 1245


>gi|229662009|gb|ACQ84444.1| DNA-dependent RNA polymerase II beta subunit [Epichloe festucae]
          Length = 1261

 Score =  523 bits (1347), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 260/487 (53%), Positives = 327/487 (67%), Gaps = 83/487 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG ++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 813  MGFFLTNYSRRMDTMANILYYPQKPLATTR------------------------------ 842

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 843  ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 887

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+FFRSY D E K   +  E FEKP  Q+   M++  YDKLD+DGI+APG+RVSG+D++I
Sbjct: 888  SLFFRSYSDQEKKVGLNYTEVFEKPFHQSTLRMKHGTYDKLDEDGIVAPGVRVSGEDIII 947

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  + +   +L   T    +RD ST LR++E GI+D V+LT+N D  K+ K+RVR+ +
Sbjct: 948  GKTAPIDQENQDLGTRTTVHQRRDISTPLRSTENGIIDSVILTVNADNVKYVKVRVRTTK 1007

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            +PQIGDKFASRHGQKGT G+ YRQE                                   
Sbjct: 1008 VPQIGDKFASRHGQKGTIGVTYRQEDMPFTREGVTPDIIINPHAIPSRMTIAHLIECLLS 1067

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+ +G  GDATPF D V V  +S LL+++GYQ RG E+M+NGHTG+K+ AQVF GPTY
Sbjct: 1068 KVSTLEGMEGDATPFTD-VTVDSVSELLRKHGYQSRGFEIMYNGHTGKKLRAQVFFGPTY 1126

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRL+HMVDDKIH+RARGPVQI+ RQP+EGRARDGGLRFGEMERDC I+HGAA FL+ERL
Sbjct: 1127 YQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKERL 1186

Query: 385  FEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMN 443
            FEVSD +R+HVC  CGL+  IAN+   +FEC+ CKNKT+I+Q+ +PYAAKLLFQEL SMN
Sbjct: 1187 FEVSDAFRVHVCEICGLMTPIANLSKQSFECRPCKNKTKIAQIHIPYAAKLLFQELQSMN 1246

Query: 444  IAPRLMV 450
            IA R+  
Sbjct: 1247 IAARMFT 1253


>gi|452820468|gb|EME27510.1| DNA-directed RNA polymerase subunit [Galdieria sulphuraria]
          Length = 1184

 Score =  523 bits (1347), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 267/497 (53%), Positives = 331/497 (66%), Gaps = 93/497 (18%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG+Y TN+ +RMDT+AHVLYYP KPLVTTR+                             
Sbjct: 733  MGIYATNYQLRMDTMAHVLYYPQKPLVTTRA----------------------------- 763

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                            ME+L+FR LPAGIN+IVAI CY+G+NQEDSVIL+ SAV+RG FR
Sbjct: 764  ----------------MEHLQFRSLPAGINAIVAIACYSGFNQEDSVILSQSAVDRGLFR 807

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+FFR+++D E +R+G  +E FE PN + C G +   YDKL++DG++A G RVSGDD+++
Sbjct: 808  SLFFRTFRDEERRRLGGAQETFEVPNPKECIGTKRGAYDKLEEDGLVAEGTRVSGDDILV 867

Query: 181  GKTITL---PENEDELEGTTKRFS-------KRDGSTFLRNSETGIVDQVMLTLNVDGYK 230
            GKT  L     N +E E T K +S       K+D ST +R++ETG+VD+VML  N  G +
Sbjct: 868  GKTCPLGRMAANGEEDE-TWKAYSQTLGGKTKKDASTSMRSTETGVVDKVMLAANEAGAR 926

Query: 231  FCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQE------------------------- 265
            F K+R+RSVR+PQ+GDKF+SRHGQKGT GI Y QE                         
Sbjct: 927  FVKVRIRSVRVPQVGDKFSSRHGQKGTVGITYGQEDLPFNVDGIVPDIIINPHAIPSRMT 986

Query: 266  -----------VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKI 314
                       VS+  G  GDATPF   V V +IS  L+  GYQ RG E+M+NG TGR +
Sbjct: 987  IGQLIECLQGKVSAIAGREGDATPFT-WVTVDEISQQLKTLGYQSRGWELMYNGFTGRPL 1045

Query: 315  NAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISH 374
             A +F+GPTYYQRLKHMVDDKIHSRARGPVQIL RQP+EGRAR+GGLRFGEMERDC ISH
Sbjct: 1046 EAHIFIGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRAREGGLRFGEMERDCMISH 1105

Query: 375  GAAQFLRERLFEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKL 434
            GAA FL+ERL + SD YRIHVCN CGLIAIA+++ NTFEC+ C+NKT+ISQV +PYA KL
Sbjct: 1106 GAAFFLKERLMDESDAYRIHVCNLCGLIAIADLKRNTFECRSCRNKTEISQVFIPYACKL 1165

Query: 435  LFQELMSMNIAPRLMVV 451
            LFQELM+M IAPR++  
Sbjct: 1166 LFQELMAMGIAPRIVTA 1182


>gi|121709250|ref|XP_001272355.1| DNA-dependent RNA polymerase II RPB140 [Aspergillus clavatus NRRL 1]
 gi|119400504|gb|EAW10929.1| DNA-dependent RNA polymerase II RPB140 [Aspergillus clavatus NRRL 1]
          Length = 1257

 Score =  523 bits (1347), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 269/486 (55%), Positives = 329/486 (67%), Gaps = 85/486 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV++TNF  RM+T+A++LYYP KPL TTR                              
Sbjct: 809  MGVFLTNFDQRMETMANILYYPQKPLATTR------------------------------ 838

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SME+LRFRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 839  ---------------SMEFLRFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 883

Query: 121  SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
            S+F+R+Y D E K +G    E+FEKP R    GMR   YDKLD+DGIIAPG+RVSG+D++
Sbjct: 884  SMFYRTYTDTE-KMVGLTVVERFEKPMRSDTIGMRKGTYDKLDEDGIIAPGVRVSGEDII 942

Query: 180  IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
            IGKT  L    +EL   TK  +K D ST LR++E GIVDQV+++ + D  KF K+R+R+ 
Sbjct: 943  IGKTAPLAPEAEELGQRTKAHTKLDVSTPLRSTENGIVDQVLVSTSNDDLKFVKVRMRTT 1002

Query: 240  RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
            +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 1003 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTREGVVPDLIINPHAIPSRMTIAHLIECQL 1062

Query: 266  --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
              VSS +G  GDATPF D V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 1063 SKVSSLRGFEGDATPFTD-VTVDSVSRLLREHGYQSRGFEVMYNGHTGRKMVAQVFLGPT 1121

Query: 324  YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRER 383
            YYQRL+HMVDDKIH+RARGP QIL RQP+EGRARDGGLRFGEMERDC I+HGA+ FL+ER
Sbjct: 1122 YYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKER 1181

Query: 384  LFEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSM 442
            LF+VSDP+R+H+C+ CGL+  IA ++   FEC+ C NK +ISQV +PYAAKLLFQEL +M
Sbjct: 1182 LFDVSDPFRVHICDDCGLMTPIAKLKKGLFECRLCNNKHRISQVHIPYAAKLLFQELAAM 1241

Query: 443  NIAPRL 448
            NIA R+
Sbjct: 1242 NIAARM 1247


>gi|119489058|ref|XP_001262829.1| DNA-dependent RNA polymerase II RPB140 [Neosartorya fischeri NRRL
            181]
 gi|119410987|gb|EAW20932.1| DNA-dependent RNA polymerase II RPB140 [Neosartorya fischeri NRRL
            181]
          Length = 1255

 Score =  523 bits (1346), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 268/486 (55%), Positives = 329/486 (67%), Gaps = 85/486 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV++TNF  RM+T+A++LYYP KPL TTR                              
Sbjct: 807  MGVFLTNFDQRMETMANILYYPQKPLATTR------------------------------ 836

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SME+LRFRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 837  ---------------SMEFLRFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 881

Query: 121  SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
            S+F+R+Y D E K +G    E+FEKP R    GMR   YDKLD+DGIIAPG+RVSG+D++
Sbjct: 882  SLFYRTYTDTE-KMVGLTVVERFEKPMRSDTIGMRKGTYDKLDEDGIIAPGVRVSGEDII 940

Query: 180  IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
            IGKT  L    +EL   TK  +K D ST LR++E GIVDQV+++ + D  KF K+R+R+ 
Sbjct: 941  IGKTAPLAPEAEELGQRTKAHTKLDVSTPLRSTENGIVDQVLVSTSNDDLKFVKVRMRTT 1000

Query: 240  RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
            ++PQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 1001 KVPQIGDKFASRHGQKGTIGITYRQEDMPFTREGVSPDLIINPHAIPSRMTIAHLIECQL 1060

Query: 266  --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
              VS+ +G  GDATPF D V V  IS LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 1061 SKVSALRGFEGDATPFTD-VTVDSISRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 1119

Query: 324  YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRER 383
            YYQRL+HMVDDKIH+RARGP QIL RQP+EGRARDGGLRFGEMERDC I+HGA+ FL+ER
Sbjct: 1120 YYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKER 1179

Query: 384  LFEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSM 442
            LF+VSDP+R+H+C+ CGL+  IA ++   FEC+ C NK +ISQV +PYAAKLLFQEL +M
Sbjct: 1180 LFDVSDPFRVHICDDCGLMTPIAKLKKGLFECRLCNNKHRISQVHIPYAAKLLFQELAAM 1239

Query: 443  NIAPRL 448
            NIA R+
Sbjct: 1240 NIAARM 1245


>gi|296412297|ref|XP_002835861.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295629657|emb|CAZ80018.1| unnamed protein product [Tuber melanosporum]
          Length = 436

 Score =  523 bits (1346), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 268/472 (56%), Positives = 326/472 (69%), Gaps = 85/472 (18%)

Query: 15  LAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYF 74
           +A++LYYP KPL TTR                                            
Sbjct: 1   MANILYYPQKPLATTR-------------------------------------------- 16

Query: 75  RSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFRSYKDAESKR 134
            SME+L+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FRS+F+RSY D E KR
Sbjct: 17  -SMEFLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYMDQE-KR 74

Query: 135 IGDQ-EEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENEDEL 193
           IG Q  E+FEKP R     +++  YDKLDDDG+IAPG+RVSG+D++IGKT  +  + DE+
Sbjct: 75  IGMQIVEEFEKPTRNNTLKLKHGTYDKLDDDGLIAPGVRVSGEDIIIGKTAPIAPDVDEM 134

Query: 194 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 253
               K  +KRD ST LR++E GIVDQVMLT N +G KF K+R+R+ +IPQIGDKFASRHG
Sbjct: 135 GQRQKYHTKRDVSTPLRSTENGIVDQVMLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHG 194

Query: 254 QKGTCGIQYRQE------------------------------------VSSNKGEIGDAT 277
           QKGT GI YRQE                                    VSS +G  GDAT
Sbjct: 195 QKGTIGITYRQEDMPFTCEGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDAT 254

Query: 278 PFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQRLKHMVDDKIH 337
           PF D V V  +STLL++ GYQ RG EVM+NG+TGRK+ AQVFLGPTYYQRL+HMVDDKIH
Sbjct: 255 PFTD-VTVDSVSTLLRQNGYQSRGFEVMYNGYTGRKLVAQVFLGPTYYQRLRHMVDDKIH 313

Query: 338 SRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCN 397
           +RARGPVQIL RQP+EGRARDGGLRFGEMERDC I+HGA+ FL+ERLFEVSD +R+H+C+
Sbjct: 314 ARARGPVQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERLFEVSDAFRVHICD 373

Query: 398 FCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRL 448
            CGL+  IAN++ N FEC+ C+NKT+ISQ+ LPYAAKLLFQEL SMNIA R+
Sbjct: 374 ICGLMTPIANLKKNLFECRPCRNKTKISQIHLPYAAKLLFQELASMNIAARM 425


>gi|327298359|ref|XP_003233873.1| DNA-dependent RNA polymerase II RPB140 [Trichophyton rubrum CBS
            118892]
 gi|326464051|gb|EGD89504.1| DNA-dependent RNA polymerase II RPB140 [Trichophyton rubrum CBS
            118892]
          Length = 1258

 Score =  522 bits (1345), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 264/486 (54%), Positives = 332/486 (68%), Gaps = 85/486 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV++TNF  RM+T+A++LYYP KPL TTR                              
Sbjct: 810  MGVFLTNFEQRMETMANILYYPQKPLATTR------------------------------ 839

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SME+L+FRELPAG N IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 840  ---------------SMEFLKFRELPAGQNVIVAIACYSGYNQEDSVIMNQSSIDRGLFR 884

Query: 121  SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
            S+F+R+Y D+E K IG    E+FEKP R     M++  YDK+DDDGI++PG+RVSG+D++
Sbjct: 885  SLFYRTYTDSE-KMIGLTVVERFEKPMRSDTLRMKHGTYDKVDDDGIVSPGVRVSGEDII 943

Query: 180  IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
            IGKT  L    +EL   TK+ +K D ST LR++E+GIVDQV+++ + D  KF K+R+R+ 
Sbjct: 944  IGKTSPLAPEAEELGQRTKQHTKLDVSTPLRSTESGIVDQVLVSTSNDDLKFVKVRMRTT 1003

Query: 240  RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
            +IPQIGDKFASRHGQKGT GI YR E                                  
Sbjct: 1004 KIPQIGDKFASRHGQKGTIGITYRHEDMPFTREGVTPDLIINPHAIPSRMTIAHLIECQL 1063

Query: 266  --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
              VSS +G  GDATPF D V V  +S+LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 1064 SKVSSLRGYEGDATPFTD-VTVDSVSSLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 1122

Query: 324  YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRER 383
            YYQRL+HMVDDKIH+RARGP QIL RQP+EGRARDGGLRFGEMERDC I+HGA+ FL+ER
Sbjct: 1123 YYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASSFLKER 1182

Query: 384  LFEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSM 442
            LF+VSDP+R+H+C+ CGL+  IA ++   FEC+ C+N+ +ISQV +PYAAKLLFQEL SM
Sbjct: 1183 LFDVSDPFRVHICDICGLMTPIAKVKKGDFECRACRNRNKISQVHIPYAAKLLFQELASM 1242

Query: 443  NIAPRL 448
            NIA R+
Sbjct: 1243 NIAARM 1248


>gi|452843951|gb|EME45885.1| hypothetical protein DOTSEDRAFT_42537 [Dothistroma septosporum NZE10]
          Length = 1260

 Score =  522 bits (1345), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 262/489 (53%), Positives = 326/489 (66%), Gaps = 85/489 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV +TN++ RMDT+A+VLYYP KPL TTR                              
Sbjct: 812  MGVTLTNYNTRMDTMANVLYYPQKPLATTR------------------------------ 841

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYL+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 842  ---------------SMEYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 886

Query: 121  SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
            S+FFRSY D E KR+G    E FEKP R     M+   YDKLD+DGII PG RVSG+D++
Sbjct: 887  SLFFRSYTDQE-KRVGMSVVEAFEKPVRADTMRMKKGTYDKLDEDGIITPGSRVSGEDIL 945

Query: 180  IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
            IGKT  +P + +EL   T   +KRD ST LR++E G++DQV++T N +G +F K+R R  
Sbjct: 946  IGKTAPMPPDAEELGQRTTAHTKRDVSTPLRSTENGVIDQVLVTTNTEGLRFVKVRTRVT 1005

Query: 240  RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
            ++PQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 1006 KVPQIGDKFASRHGQKGTVGITYRQEDMPFTADGLTPDIIINPHAIPSRMTIAHLIECLL 1065

Query: 266  --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
              V +  G+ GDATPF D V V  +S +L  +G+Q RG EVM+NGHTGRK+NAQVFLGPT
Sbjct: 1066 SKVGALNGQEGDATPFTD-VTVTSVSEILASHGFQQRGFEVMYNGHTGRKLNAQVFLGPT 1124

Query: 324  YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRER 383
            YYQRL+HMVDDKIH+RARGP+QIL RQP+EGRARDGGLRFGEMERDC I+HGA+ FL+ER
Sbjct: 1125 YYQRLRHMVDDKIHARARGPLQILTRQPVEGRARDGGLRFGEMERDCMIAHGASSFLKER 1184

Query: 384  LFEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSM 442
            L +VSD +R+HVC  CGL+  IA+++   FEC+ CKNKT+I+Q+ +PYAAKLLFQEL +M
Sbjct: 1185 LLDVSDAFRVHVCEICGLMTPIASLKKQQFECRPCKNKTRIAQIIIPYAAKLLFQELAAM 1244

Query: 443  NIAPRLMVV 451
            N+A R+   
Sbjct: 1245 NVATRMFTT 1253


>gi|358395023|gb|EHK44416.1| hypothetical protein TRIATDRAFT_151043 [Trichoderma atroviride IMI
            206040]
          Length = 1261

 Score =  522 bits (1345), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 262/485 (54%), Positives = 326/485 (67%), Gaps = 83/485 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG ++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 813  MGFFLTNYSRRMDTMANILYYPQKPLGTTR------------------------------ 842

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 843  ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 887

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+FFRSY D E K   +  E FEKP  Q    M++  YDKLD+DGI+APG+RVSG+D++I
Sbjct: 888  SLFFRSYSDQEKKVGLNYTEVFEKPFHQNTLRMKHGTYDKLDEDGIVAPGVRVSGEDIII 947

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  +     +L   T    +RD ST LR++E GIVDQV++T+N D  K+ K+RVR+ +
Sbjct: 948  GKTAPIDAETQDLGTRTTMHQRRDISTPLRSTENGIVDQVIVTVNADNVKYVKVRVRTTK 1007

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGT G+ YRQE                                   
Sbjct: 1008 IPQIGDKFASRHGQKGTIGVTYRQEDMPFTREGLTPDIIINPHAIPSRMTIAHLIECLLS 1067

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+ +G  GDATPF D V V  +S LL+++GYQ RG E+M+NGHTGRK+ AQVF GPTY
Sbjct: 1068 KVSTLEGMEGDATPFTD-VTVDSVSELLRKHGYQSRGFEIMYNGHTGRKLRAQVFFGPTY 1126

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRL+HMVDDKIH+RARGPVQI+ RQP+EGRARDGGLRFGEMERDC I+HGAA FL+ERL
Sbjct: 1127 YQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAASFLKERL 1186

Query: 385  FEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMN 443
            FEVSD +R+H+C  CGL+  IAN+   +FEC+ CKNKT+I+Q+ +PYAAKLLFQEL SMN
Sbjct: 1187 FEVSDAFRVHICEICGLMTPIANLSKQSFECRPCKNKTKIAQIHIPYAAKLLFQELQSMN 1246

Query: 444  IAPRL 448
            IA R+
Sbjct: 1247 IAARM 1251


>gi|340517145|gb|EGR47390.1| beta subunit of DNA-directed RNA polymerase [Trichoderma reesei QM6a]
          Length = 1262

 Score =  521 bits (1343), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 261/487 (53%), Positives = 326/487 (66%), Gaps = 83/487 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG ++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 814  MGFFLTNYSRRMDTMANILYYPQKPLGTTR------------------------------ 843

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 844  ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 888

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+FFRSY D E K   +  E FEKP  Q    M++  YDKLD+DGI+APG+RVSG+D++I
Sbjct: 889  SLFFRSYSDQEKKVGLNYTEVFEKPFHQNTLRMKHGTYDKLDEDGIVAPGVRVSGEDIII 948

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  +  +  +L   T    +RD ST LR++E GIVD V++T+N D  K+ K+RVR+ +
Sbjct: 949  GKTAPIDADTQDLGTRTTMHQRRDISTPLRSTENGIVDSVIVTVNADNVKYVKVRVRTTK 1008

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGT G+ YRQE                                   
Sbjct: 1009 IPQIGDKFASRHGQKGTIGVTYRQEDMPFTREGITPDIIINPHAIPSRMTIAHLIECLLS 1068

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+ +G  GDATPF D V V  +S LL+++GYQ RG E+M+NGHTGRK+ AQVF GPTY
Sbjct: 1069 KVSTLEGMEGDATPFTD-VTVDSVSELLRKHGYQSRGFEIMYNGHTGRKLRAQVFFGPTY 1127

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRL+HMVDDKIH+RARGPVQI+ RQP+EGRARDGGLRFGEMERDC I+HGAA FL+ERL
Sbjct: 1128 YQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAASFLKERL 1187

Query: 385  FEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMN 443
            FEVSD +R+H+C  CGL+  IAN+   +FEC+ CKNKT+I+Q+ +PYAAKLLFQEL SMN
Sbjct: 1188 FEVSDAFRVHICEICGLMTPIANLSKQSFECRPCKNKTKIAQIHIPYAAKLLFQELQSMN 1247

Query: 444  IAPRLMV 450
            IA R+  
Sbjct: 1248 IAARMFT 1254


>gi|255955085|ref|XP_002568295.1| Pc21g12680 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211590006|emb|CAP96165.1| Pc21g12680 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1255

 Score =  521 bits (1343), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 267/486 (54%), Positives = 329/486 (67%), Gaps = 85/486 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV++TNF  RM+T+A++LYYP KPL TTR                              
Sbjct: 807  MGVFLTNFSQRMETMANILYYPQKPLATTR------------------------------ 836

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SME+LRFRELPAG N+IVAI  Y+GYNQEDSVI+N S+++RG FR
Sbjct: 837  ---------------SMEFLRFRELPAGQNAIVAIATYSGYNQEDSVIMNQSSIDRGLFR 881

Query: 121  SVFFRSYKDAESKRIGDQE-EQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
            S+F+R+Y D E K +G Q  E+FEKP R    GMR   YDKLD+DGI+APG+RVSG+D++
Sbjct: 882  SLFYRTYADTE-KMVGLQVVERFEKPMRLDTLGMRKGTYDKLDEDGIVAPGVRVSGEDII 940

Query: 180  IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
            IGKT  L  + +EL   TK  +K D ST LR++E GIVDQV+++   D  KF K+R+R+ 
Sbjct: 941  IGKTAPLAADAEELGQRTKAHTKIDVSTPLRSTENGIVDQVLISTGNDDLKFVKVRMRTT 1000

Query: 240  RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
            ++PQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 1001 KVPQIGDKFASRHGQKGTIGITYRQEDMPFTREGVVPDLIINPHAIPSRMTIAHLIECQL 1060

Query: 266  --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
              VS+ +G  GDATPF D V V  +S LL+E+GYQ RG EVMFNGHTGRK+ AQVFLGPT
Sbjct: 1061 SKVSALRGFEGDATPFTD-VTVDSVSRLLREHGYQSRGFEVMFNGHTGRKLVAQVFLGPT 1119

Query: 324  YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRER 383
            YYQRL+HMVDDKIH+RARGP QIL RQP+EGRARDGGLRFGEMERDC I+HGA+ FL+ER
Sbjct: 1120 YYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASSFLKER 1179

Query: 384  LFEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSM 442
            LF+VSDP+R+H+C+ CGL+  +A ++   FEC+ C NK +ISQV +PYAAKLLFQEL SM
Sbjct: 1180 LFDVSDPFRVHICDDCGLMTPVAKLKKGLFECRLCNNKHRISQVHIPYAAKLLFQELASM 1239

Query: 443  NIAPRL 448
            NIA R+
Sbjct: 1240 NIAARM 1245


>gi|425773185|gb|EKV11554.1| DNA-directed RNA polymerase [Penicillium digitatum Pd1]
 gi|425778788|gb|EKV16893.1| DNA-directed RNA polymerase [Penicillium digitatum PHI26]
          Length = 1255

 Score =  521 bits (1342), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 268/486 (55%), Positives = 329/486 (67%), Gaps = 85/486 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV++TNF  RM+T+A++LYYP KPL TTR                              
Sbjct: 807  MGVFLTNFSQRMETMANILYYPQKPLATTR------------------------------ 836

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SME+LRFRELPAG N+IVAI  Y+GYNQEDSVI+N S+++RG FR
Sbjct: 837  ---------------SMEFLRFRELPAGQNAIVAIATYSGYNQEDSVIMNQSSIDRGLFR 881

Query: 121  SVFFRSYKDAESKRIGDQE-EQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
            S+F+R+Y D E K +G Q  E+FEKP R    GMR   YDKLD+DGI+APG+RVSG+D++
Sbjct: 882  SLFYRTYADTE-KMVGLQVVERFEKPMRIDTLGMRKGTYDKLDEDGIVAPGVRVSGEDII 940

Query: 180  IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
            IGKT  L  + +EL   TK  +K D ST LR++E GIVDQV+++   D  KF K+R+R+ 
Sbjct: 941  IGKTAPLAADAEELGQRTKAHTKIDVSTPLRSTENGIVDQVLVSTGNDDLKFVKVRMRTT 1000

Query: 240  RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
            +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 1001 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTREGVVPDLIINPHAIPSRMTIAHLIECQL 1060

Query: 266  --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
              VS+ +G  GDATPF D V V  +S LL+E+GYQ RG EVMFNGHTGRK+ AQVFLGPT
Sbjct: 1061 SKVSALRGFEGDATPFTD-VTVDSVSRLLREHGYQSRGFEVMFNGHTGRKMVAQVFLGPT 1119

Query: 324  YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRER 383
            YYQRL+HMVDDKIH+RARGP QIL RQP+EGRARDGGLRFGEMERDC I+HGA+ FL+ER
Sbjct: 1120 YYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKER 1179

Query: 384  LFEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSM 442
            LF+VSDP+R+H+C+ CGL+  +A ++   FEC+ C NK +ISQV +PYAAKLLFQEL SM
Sbjct: 1180 LFDVSDPFRVHICDDCGLMTPVAKLKKGLFECRLCNNKHRISQVHIPYAAKLLFQELASM 1239

Query: 443  NIAPRL 448
            NIA R+
Sbjct: 1240 NIAARM 1245


>gi|358386392|gb|EHK23988.1| hypothetical protein TRIVIDRAFT_76818 [Trichoderma virens Gv29-8]
          Length = 1261

 Score =  521 bits (1341), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 261/487 (53%), Positives = 325/487 (66%), Gaps = 83/487 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG ++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 813  MGFFLTNYSRRMDTMANILYYPQKPLGTTR------------------------------ 842

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 843  ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 887

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+FFRSY D E K   +  E FEKP  Q    M++  YDKLD+DGI+APG+RVSG+D++I
Sbjct: 888  SLFFRSYSDQEKKVGLNYTEVFEKPFHQNTLRMKHGTYDKLDEDGIVAPGVRVSGEDIII 947

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  +     +L   T    +RD ST LR++E GIVD V++T+N D  K+ K+RVR+ +
Sbjct: 948  GKTAPIDAETQDLGTRTTMHQRRDISTPLRSTENGIVDSVIVTVNADNVKYVKVRVRTTK 1007

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGT G+ YRQE                                   
Sbjct: 1008 IPQIGDKFASRHGQKGTIGVTYRQEDMPFTREGVTPDIIINPHAIPSRMTIAHLIECLLS 1067

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+ +G  GDATPF D V V  +S LL+++GYQ RG E+M+NGHTGRK+ AQVF GPTY
Sbjct: 1068 KVSTLEGMEGDATPFTD-VTVDSVSELLRKHGYQSRGFEIMYNGHTGRKLRAQVFFGPTY 1126

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRL+HMVDDKIH+RARGPVQI+ RQP+EGRARDGGLRFGEMERDC I+HGAA FL+ERL
Sbjct: 1127 YQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAASFLKERL 1186

Query: 385  FEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMN 443
            FEVSD +R+H+C  CGL+  IAN+   +FEC+ CKNKT+I+Q+ +PYAAKLLFQEL SMN
Sbjct: 1187 FEVSDAFRVHICEICGLMTPIANLSKQSFECRPCKNKTKIAQIHIPYAAKLLFQELQSMN 1246

Query: 444  IAPRLMV 450
            IA R+  
Sbjct: 1247 IAARMFT 1253


>gi|443898353|dbj|GAC75688.1| RNA polymerase II, second largest subunit [Pseudozyma antarctica
            T-34]
          Length = 1240

 Score =  520 bits (1340), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 259/485 (53%), Positives = 331/485 (68%), Gaps = 84/485 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            +GV I+N   R D++AHVLYYP KPL TTR                              
Sbjct: 802  IGVPISNILSRADSMAHVLYYPQKPLGTTR------------------------------ 831

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SME++RFRELPAG NSIVAI+CY+GYNQEDSVI+N S+++RG+ R
Sbjct: 832  ---------------SMEHIRFRELPAGQNSIVAIMCYSGYNQEDSVIMNQSSIDRGFMR 876

Query: 121  SVFFRSYKDAESKRIGD-QEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
            S+++R Y  AE K++G  Q E+FEKP+R T   M++  YDK+D DG++APG RVSGDDV+
Sbjct: 877  SLYYRGYM-AEEKKVGVMQLEEFEKPHRDTTIRMKHGTYDKIDADGLVAPGTRVSGDDVI 935

Query: 180  IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
            IGKT  LP + +EL   +K  +K+D S  L+++E GI+DQV+LT N +G KF K+RVR+ 
Sbjct: 936  IGKTAPLPPDSEELGMRSKLHTKKDASISLKSTENGIIDQVLLTTNSNGNKFVKVRVRNS 995

Query: 240  RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
            R+PQ GDKFASRHGQKGT GI YRQE                                  
Sbjct: 996  RVPQTGDKFASRHGQKGTVGIMYRQEDMPFSAEGITPDIIINPHAIPSRMTIGHLVECLL 1055

Query: 266  --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
              V++  G+ GDATPF + + V+ +S++L+  GYQ RG EVM++GHTGRK+ AQV+LGPT
Sbjct: 1056 SKVAALSGQEGDATPFTE-LTVEAVSSILRGLGYQSRGLEVMYHGHTGRKMQAQVYLGPT 1114

Query: 324  YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRER 383
            YYQRLKHMVDDKIHSRARGPVQIL RQP+EGR+R GGLRFGEMERDC I+HG A FL+ER
Sbjct: 1115 YYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRGGGLRFGEMERDCMIAHGIAGFLKER 1174

Query: 384  LFEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMN 443
            +F+VSDPYRIHVC+ CGL A+AN++  T+EC+ C+N+T ISQ+ +PYAAKLL QEL S+N
Sbjct: 1175 MFDVSDPYRIHVCDLCGLTALANLKKGTYECRSCRNRTAISQIHIPYAAKLLMQELQSVN 1234

Query: 444  IAPRL 448
            +A RL
Sbjct: 1235 VALRL 1239


>gi|378729989|gb|EHY56448.1| DNA-directed RNA polymerase II subunit RPB2 [Exophiala dermatitidis
            NIH/UT8656]
          Length = 1263

 Score =  520 bits (1340), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 259/485 (53%), Positives = 328/485 (67%), Gaps = 83/485 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV++TNF  RM+T++++LYYP KPL  T +M+                           
Sbjct: 820  MGVFLTNFDQRMETMSNILYYPQKPLARTMAMD--------------------------- 852

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                              YL+FRELPAG N+IVAI  Y+GYNQEDSVI+N S+++RG FR
Sbjct: 853  ------------------YLKFRELPAGQNAIVAIATYSGYNQEDSVIMNQSSIDRGLFR 894

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+F+R+Y+D+E        EQFEKP R     +++  YDK+D+DGI+APG+RVSG+D+++
Sbjct: 895  SLFYRTYQDSEKSVGHSVVEQFEKPTRADTLRLKHGTYDKIDEDGIVAPGVRVSGEDIIM 954

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  +  + +EL    K+  KRD ST LR++E+GIVDQVMLT   +G++F K+RVR+ +
Sbjct: 955  GKTAPMAPDAEELGQRLKQHIKRDVSTPLRSTESGIVDQVMLTTTAEGHRFAKVRVRTTK 1014

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            +PQIGDKFASRHGQKGT GI YR E                                   
Sbjct: 1015 VPQIGDKFASRHGQKGTIGITYRHEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQLS 1074

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             V++ +G+ GDATPF   V V +IS LL+  GYQ RG EVM+NGHTGRK+ AQVFLGPTY
Sbjct: 1075 KVATLRGDEGDATPFT-KVTVTQISELLRNMGYQSRGFEVMYNGHTGRKLVAQVFLGPTY 1133

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRL+HMVDDKIHSRARGP QIL RQP+EGRARDGGLRFGEMERDC I+HGA+ FL+ERL
Sbjct: 1134 YQRLRHMVDDKIHSRARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASSFLKERL 1193

Query: 385  FEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMN 443
            F+VSDP+R+HVC+ CGL+  IA ++ NTFECK C NK +ISQ+ LPYAAKLLFQEL +MN
Sbjct: 1194 FDVSDPFRVHVCDICGLMTVIAKLKKNTFECKNCNNKNKISQIYLPYAAKLLFQELWAMN 1253

Query: 444  IAPRL 448
            IA RL
Sbjct: 1254 IAARL 1258


>gi|260826766|ref|XP_002608336.1| hypothetical protein BRAFLDRAFT_126222 [Branchiostoma floridae]
 gi|229293687|gb|EEN64346.1| hypothetical protein BRAFLDRAFT_126222 [Branchiostoma floridae]
          Length = 1104

 Score =  520 bits (1338), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 262/393 (66%), Positives = 289/393 (73%), Gaps = 81/393 (20%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITNFHVRMDTLAHVLYYP KPLVTTR                              
Sbjct: 757  MGVYITNFHVRMDTLAHVLYYPQKPLVTTR------------------------------ 786

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYLRFRELPAGIN+IVAI  YTGYNQEDSVI+NASA++RG FR
Sbjct: 787  ---------------SMEYLRFRELPAGINAIVAIASYTGYNQEDSVIMNASAIDRGLFR 831

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSYK++ESK+  DQEE FEKP R    GMRNAIYDKLDDDGIIAPG+RVSG+DV+I
Sbjct: 832  SVFYRSYKESESKKGLDQEEIFEKPTRDEVTGMRNAIYDKLDDDGIIAPGVRVSGEDVII 891

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT+TLPENEDELE TTKRF+KRD STFLR+SETGIVDQVM+++N +GYKFCK+RVRSVR
Sbjct: 892  GKTVTLPENEDELESTTKRFTKRDSSTFLRSSETGIVDQVMVSINQEGYKFCKVRVRSVR 951

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGTCGI YRQE                                   
Sbjct: 952  IPQIGDKFASRHGQKGTCGITYRQEDMPFTAEGISPDIIINPHAVPSRMTIGHLIECLQG 1011

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+NKGEIGDATPFNDAVNVQKIS LL EYGY LRGNEV++NG TGRK++ Q+F+GPTY
Sbjct: 1012 KVSANKGEIGDATPFNDAVNVQKISNLLHEYGYHLRGNEVVYNGFTGRKLSTQLFIGPTY 1071

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRAR 357
            YQRLKHMVDDKIHSRARGPVQ L RQPMEGR+R
Sbjct: 1072 YQRLKHMVDDKIHSRARGPVQNLNRQPMEGRSR 1104


>gi|190333344|gb|AAS67502.2| DNA-dependent RNA polymerase II second largest subunit, partial
            [Meyerozyma guilliermondii]
          Length = 1219

 Score =  519 bits (1337), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 255/479 (53%), Positives = 325/479 (67%), Gaps = 83/479 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV++TN+ VRMDT+A++LYYP KPL TTR+                             
Sbjct: 787  MGVFLTNYSVRMDTMANILYYPQKPLATTRA----------------------------- 817

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                            ME+L+FRELPAG N+IVAI CY+GYNQEDS+I+N S+++RG FR
Sbjct: 818  ----------------MEHLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFR 861

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+FFR+Y D E ++     E FEKP+R     +++  Y+KLDDDG+IAPG+RVSG+D++I
Sbjct: 862  SLFFRTYMDLEKRQGMKALETFEKPSRSDTLRLKHGTYEKLDDDGLIAPGIRVSGEDIII 921

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  +P + +EL   T+  +KRD ST LR++E+GIVDQV+LT N DG KF K+R+R+ +
Sbjct: 922  GKTTPIPPDTEELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKVRMRTTK 981

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            +PQIGDKFASRHGQKGT G+ YR E                                   
Sbjct: 982  VPQIGDKFASRHGQKGTVGVTYRHEDMPFTSQGIVPDLIINPHAIPSRMTVAHLIECLLS 1041

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VSS  G  GDA+P  D V  + +S LL+E+GYQ RG EVM++GHTG+K+ AQVF GPTY
Sbjct: 1042 KVSSLSGLEGDASPLTD-VTAEAVSKLLREHGYQSRGFEVMYHGHTGKKLMAQVFFGPTY 1100

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRL+HMVDDKIH+RARGPVQ+L RQP+EGR+RDGGLRFGEMERDC I+HGAA FL+ERL
Sbjct: 1101 YQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAGFLKERL 1160

Query: 385  FEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSM 442
             E SD +R+HVC  CGL++ IAN++ N FEC+ CKNKT I QV +PYAAKLLFQE M+M
Sbjct: 1161 MEASDAFRVHVCGVCGLMSVIANLKKNQFECRSCKNKTNIYQVHIPYAAKLLFQESMAM 1219


>gi|171677674|ref|XP_001903788.1| hypothetical protein [Podospora anserina S mat+]
 gi|170936905|emb|CAP61564.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1278

 Score =  519 bits (1337), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 264/488 (54%), Positives = 328/488 (67%), Gaps = 85/488 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG ++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 830  MGFFLTNYSRRMDTMANILYYPQKPLATTR------------------------------ 859

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SME+L+FRELPAG N+IVAILCY+GYNQEDSV++N S+++RG FR
Sbjct: 860  ---------------SMEFLKFRELPAGQNAIVAILCYSGYNQEDSVVMNQSSIDRGIFR 904

Query: 121  SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
            S+FFRSY D E KR+G +  E FEKP R     +++  YDKLD DGIIAPG+RVSG+D++
Sbjct: 905  SLFFRSYTDCE-KRVGINIVEMFEKPTRGDTLRLKHGTYDKLDADGIIAPGIRVSGEDII 963

Query: 180  IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
            IGKT  +  +  EL    ++  KRD ST LR++E+GIVD V+LT N DG ++ K+RVR+ 
Sbjct: 964  IGKTSPINPDNAELGQRQQQHVKRDASTPLRSTESGIVDSVVLTTNQDGMRYVKVRVRTT 1023

Query: 240  RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
            +IPQIGDKFASRHGQKGT G+ YR E                                  
Sbjct: 1024 KIPQIGDKFASRHGQKGTIGLTYRMEDMPFTAEGITPDIIINPHAIPSRMTIAHLVECLL 1083

Query: 266  --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
              V++ KG  GDATPF D V V  +S LL+E GYQ RG E++++GHTGRK+ AQ F GPT
Sbjct: 1084 SKVATLKGLEGDATPFTD-VTVDSVSDLLREQGYQSRGFEILYHGHTGRKLRAQCFFGPT 1142

Query: 324  YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRER 383
            YYQRL+HMVDDKIH+RARGPVQI+ RQP+EGRARDGGLRFGEMERDC I+HGAA FL+ER
Sbjct: 1143 YYQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAASFLKER 1202

Query: 384  LFEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSM 442
            LFEVSD YR+H+C  CGL+  IAN+   +FEC+ CKNKT+I+QV +PYAAKLLFQELMSM
Sbjct: 1203 LFEVSDAYRVHICEICGLMTPIANLTKQSFECRPCKNKTKIAQVHMPYAAKLLFQELMSM 1262

Query: 443  NIAPRLMV 450
             IA R+  
Sbjct: 1263 GIASRMFT 1270


>gi|398404063|ref|XP_003853498.1| DNA-directed RNA polymerase II subunit RPB2 [Zymoseptoria tritici
            IPO323]
 gi|339473380|gb|EGP88474.1| hypothetical protein MYCGRDRAFT_99853 [Zymoseptoria tritici IPO323]
          Length = 1231

 Score =  519 bits (1336), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 260/486 (53%), Positives = 329/486 (67%), Gaps = 85/486 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV +TN++VRMDT+A+VLYYP KPL TTR                              
Sbjct: 783  MGVTLTNYNVRMDTMANVLYYPQKPLATTR------------------------------ 812

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SME+L+FR+LPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 813  ---------------SMEFLKFRDLPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 857

Query: 121  SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
            S+F+R+Y D E KR+G    E FEKP R     M++  YDKLD+DGII+PG RVSG D++
Sbjct: 858  SLFYRAYMDQE-KRVGMSVVESFEKPTRSDTMRMQHGTYDKLDEDGIISPGARVSGTDIL 916

Query: 180  IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
            IGKT  +P + +EL   TK   KRD ST LR++E G+VDQV+LT N +G +F K+R R  
Sbjct: 917  IGKTAPMPPDAEELGQRTKLHVKRDVSTPLRSTENGVVDQVLLTTNTEGLRFVKVRTRVT 976

Query: 240  RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
            ++PQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 977  KVPQIGDKFASRHGQKGTIGITYRQEDMPFSADGLTPDIIINPHAIPSRMTIAHLIECLL 1036

Query: 266  --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
              V + +G+ GDATPF + V V  IS +L+  G+Q RG EVM+NGHTG+K+NAQVFLGPT
Sbjct: 1037 SKVGALQGQEGDATPFTE-VTVTSISEILKSNGFQQRGFEVMYNGHTGKKLNAQVFLGPT 1095

Query: 324  YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRER 383
            YYQRL+HMVDDKIH+RARGP+QIL RQP+EGRARDGGLRFGEMERDC I+HGA+ FL+ER
Sbjct: 1096 YYQRLRHMVDDKIHARARGPLQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKER 1155

Query: 384  LFEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSM 442
            L +VSD +R+H+C  CGL+  IA+++   FEC+ CKNKT+I+Q+ +PYAAKLLFQEL +M
Sbjct: 1156 LLDVSDAFRVHICELCGLMTPIASIKKQQFECRPCKNKTKIAQIIIPYAAKLLFQELAAM 1215

Query: 443  NIAPRL 448
            N+A R+
Sbjct: 1216 NVATRM 1221


>gi|224077112|ref|XP_002305137.1| predicted protein [Populus trichocarpa]
 gi|222848101|gb|EEE85648.1| predicted protein [Populus trichocarpa]
          Length = 421

 Score =  519 bits (1336), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 249/410 (60%), Positives = 305/410 (74%), Gaps = 39/410 (9%)

Query: 77  MEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFRSYKDAESKRIG 136
           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FRS+FFRSY+D E K   
Sbjct: 1   MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGT 60

Query: 137 DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENEDELEGT 196
             +E F +P+R    GMR+  YDKLDDDG+  PG RVSG+DV+IGKT   P  ++E +G 
Sbjct: 61  LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PIAQEEAQGQ 118

Query: 197 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 256
           + R+++RD S  LR+SETG+VDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHGQKG
Sbjct: 119 SARYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKG 178

Query: 257 TCGIQYRQE------------------------------------VSSNKGEIGDATPFN 280
           T G+ Y QE                                    V+++ G+ GDATPF 
Sbjct: 179 TVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFT 238

Query: 281 DAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRA 340
           D V V  IS  L + GYQ+RG E M+NGHTGR+++A +FLGPTYYQRLKHMVDDKIHSR 
Sbjct: 239 D-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRG 297

Query: 341 RGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNFCG 400
           RGPVQIL RQP EGR+RDGGLRFGEMERDC I+HGAA FL+ERLF+ SD YR+HVC  CG
Sbjct: 298 RGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCG 357

Query: 401 LIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMV 450
           LIAIAN++ N+FEC+GCKNKT I QV +PYA KLLFQELM+M IAPR++ 
Sbjct: 358 LIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 407


>gi|330922612|ref|XP_003299905.1| hypothetical protein PTT_11005 [Pyrenophora teres f. teres 0-1]
 gi|311326219|gb|EFQ92000.1| hypothetical protein PTT_11005 [Pyrenophora teres f. teres 0-1]
          Length = 1262

 Score =  518 bits (1335), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 261/488 (53%), Positives = 326/488 (66%), Gaps = 85/488 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV +TNF +RM+T+ +VLYYP KPL TTR                              
Sbjct: 813  MGVALTNFALRMETMMNVLYYPQKPLATTR------------------------------ 842

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYL+FRELPAG N+IVAI  Y GYNQEDSVI+N S+++RG FR
Sbjct: 843  ---------------SMEYLKFRELPAGQNAIVAIATYGGYNQEDSVIMNQSSIDRGLFR 887

Query: 121  SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
            S+F+R+Y + E KRIG +  EQFEKP R     ++   YDKLDDDG++APG+RVSGDD++
Sbjct: 888  SLFYRAYTEQE-KRIGVNVLEQFEKPTRADTLRLKGGTYDKLDDDGVVAPGVRVSGDDII 946

Query: 180  IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
            IGKT  +  +  EL   T   +KRD ST LR++E GIVDQV+ T N +G +F K+R R+ 
Sbjct: 947  IGKTAPIATDAAELGQKTTLHTKRDVSTPLRSTENGIVDQVLFTTNTEGLRFVKVRTRTT 1006

Query: 240  RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
            ++PQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 1007 KVPQIGDKFASRHGQKGTIGITYRQEDMPFSREGLTPDLIINPHAIPSRMTIAHLVECLL 1066

Query: 266  --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
              V +  G+ GDATPF D V V ++S LL+  GYQ RG E+M+NGHTG+K+  Q+FLGPT
Sbjct: 1067 SKVGAITGQEGDATPFTD-VTVDQVSQLLENAGYQKRGFEIMYNGHTGKKMRTQIFLGPT 1125

Query: 324  YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRER 383
            YYQRL+HMVDDKIH+RARGP+QIL RQP+EGRARDGGLRFGEMERDC I+HGAA FL+ER
Sbjct: 1126 YYQRLRHMVDDKIHARARGPLQILTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKER 1185

Query: 384  LFEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSM 442
            LF VSD Y +HVC+ CGL++ IAN++ N +EC+ C NKT+ISQ+ +PYAAKLLFQEL++M
Sbjct: 1186 LFTVSDAYTVHVCDICGLMSPIANLKKNLYECRPCHNKTRISQIHIPYAAKLLFQELLAM 1245

Query: 443  NIAPRLMV 450
            NIA R+  
Sbjct: 1246 NIATRMFT 1253


>gi|95115791|gb|ABF56190.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
            sp. tritici]
          Length = 1262

 Score =  518 bits (1334), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 260/488 (53%), Positives = 328/488 (67%), Gaps = 85/488 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV +TN+ +RM+T+ +VLYYP KPL TTR                              
Sbjct: 813  MGVALTNYALRMETMMNVLYYPQKPLATTR------------------------------ 842

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYL+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 843  ---------------SMEYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 887

Query: 121  SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
            S+F+R+Y + E KRIG +  EQFEKP R     ++   YDKLDDDG++APG+RVSGDD++
Sbjct: 888  SLFYRAYTEQE-KRIGVNVLEQFEKPTRADTLRLKGGTYDKLDDDGVVAPGVRVSGDDII 946

Query: 180  IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
            IGKT  +  +  EL   T   +KRD ST LR++E GIVDQV+ T N +G +F K+R R+ 
Sbjct: 947  IGKTAPIAADAQELGQKTTLHTKRDVSTPLRSTENGIVDQVLFTTNTEGLRFVKVRTRTT 1006

Query: 240  RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
            ++PQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 1007 KVPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGLTPDLVINPHAIPSRMTIAHLVECLL 1066

Query: 266  --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
              V +  G+ GDATPF + V V +IS LL++ GYQ RG E+M+NGHTG+K+  QVFLGPT
Sbjct: 1067 SKVGAITGQEGDATPFTE-VTVDEISDLLEQAGYQKRGFEIMYNGHTGKKMRVQVFLGPT 1125

Query: 324  YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRER 383
            YYQRL+HMVDDKIH+RARGP+QIL RQP+EGRARDGGLRFGEMERDC I+HGAA FL+ER
Sbjct: 1126 YYQRLRHMVDDKIHARARGPLQILTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKER 1185

Query: 384  LFEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSM 442
            LF VSD Y +HVC+ CGL++ IA+++   +EC+ C NKT+ISQ+ +PYAAKLLFQEL++M
Sbjct: 1186 LFTVSDAYTVHVCDICGLMSPIASIKKGMYECRPCHNKTRISQIHIPYAAKLLFQELLAM 1245

Query: 443  NIAPRLMV 450
            NIA R+  
Sbjct: 1246 NIATRMFT 1253


>gi|95115799|gb|ABF56194.1| RNA polymerase II second largest subunit [Phaeosphaeria nodorum]
          Length = 1262

 Score =  518 bits (1334), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 260/488 (53%), Positives = 328/488 (67%), Gaps = 85/488 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV +TN+ +RM+T+ +VLYYP KPL TTR                              
Sbjct: 813  MGVALTNYALRMETMMNVLYYPQKPLATTR------------------------------ 842

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYL+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 843  ---------------SMEYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 887

Query: 121  SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
            S+F+R+Y + E KRIG +  EQFEKP R     ++   YDKLDDDG++APG+RVSGDD++
Sbjct: 888  SLFYRAYTEQE-KRIGVNVLEQFEKPTRADTLRLKGGTYDKLDDDGVVAPGVRVSGDDII 946

Query: 180  IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
            IGKT  +  +  EL   T   +KRD ST LR++E GIVDQV+ T N +G +F K+R R+ 
Sbjct: 947  IGKTAPIAADAQELGQKTTLHTKRDVSTPLRSTENGIVDQVLFTTNTEGLRFVKVRTRTT 1006

Query: 240  RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
            ++PQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 1007 KVPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGLTPDLVINPHAIPSRMTIAHLVECLL 1066

Query: 266  --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
              V +  G+ GDATPF + V V +IS LL++ GYQ RG E+M+NGHTG+K+  QVFLGPT
Sbjct: 1067 SKVGAITGQEGDATPFTE-VTVDEISDLLEQAGYQKRGFEIMYNGHTGKKMRVQVFLGPT 1125

Query: 324  YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRER 383
            YYQRL+HMVDDKIH+RARGP+QIL RQP+EGRARDGGLRFGEMERDC I+HGAA FL+ER
Sbjct: 1126 YYQRLRHMVDDKIHARARGPLQILTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKER 1185

Query: 384  LFEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSM 442
            LF VSD Y +HVC+ CGL++ IA+++   +EC+ C NKT+ISQ+ +PYAAKLLFQEL++M
Sbjct: 1186 LFTVSDAYTVHVCDICGLMSPIASIKKGMYECRPCHNKTRISQIHIPYAAKLLFQELLAM 1245

Query: 443  NIAPRLMV 450
            NIA R+  
Sbjct: 1246 NIATRMFT 1253


>gi|169616566|ref|XP_001801698.1| hypothetical protein SNOG_11456 [Phaeosphaeria nodorum SN15]
 gi|160703211|gb|EAT81164.2| hypothetical protein SNOG_11456 [Phaeosphaeria nodorum SN15]
          Length = 1252

 Score =  518 bits (1334), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 260/486 (53%), Positives = 328/486 (67%), Gaps = 85/486 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV +TN+ +RM+T+ +VLYYP KPL TTR                              
Sbjct: 803  MGVALTNYALRMETMMNVLYYPQKPLATTR------------------------------ 832

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYL+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 833  ---------------SMEYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 877

Query: 121  SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
            S+F+R+Y + E KRIG +  EQFEKP R     ++   YDKLDDDG++APG+RVSGDD++
Sbjct: 878  SLFYRAYTEQE-KRIGVNVLEQFEKPTRADTLRLKGGTYDKLDDDGVVAPGVRVSGDDII 936

Query: 180  IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
            IGKT  +  +  EL   T   +KRD ST LR++E GIVDQV+ T N +G +F K+R R+ 
Sbjct: 937  IGKTAPIAADAQELGQKTTLHTKRDVSTPLRSTENGIVDQVLFTTNTEGLRFVKVRTRTT 996

Query: 240  RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
            ++PQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 997  KVPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGLTPDLVINPHAIPSRMTIAHLVECLL 1056

Query: 266  --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
              V +  G+ GDATPF + V V +IS LL++ GYQ RG E+M+NGHTG+K+  QVFLGPT
Sbjct: 1057 SKVGAITGQEGDATPFTE-VTVDEISDLLEQAGYQKRGFEIMYNGHTGKKMRVQVFLGPT 1115

Query: 324  YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRER 383
            YYQRL+HMVDDKIH+RARGP+QIL RQP+EGRARDGGLRFGEMERDC I+HGAA FL+ER
Sbjct: 1116 YYQRLRHMVDDKIHARARGPLQILTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKER 1175

Query: 384  LFEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSM 442
            LF VSD Y +HVC+ CGL++ IA+++   +EC+ C NKT+ISQ+ +PYAAKLLFQEL++M
Sbjct: 1176 LFTVSDAYTVHVCDICGLMSPIASIKKGMYECRPCHNKTRISQIHIPYAAKLLFQELLAM 1235

Query: 443  NIAPRL 448
            NIA R+
Sbjct: 1236 NIATRM 1241


>gi|95115813|gb|ABF56201.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
            sp. avenaria]
 gi|95115815|gb|ABF56202.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
            sp. avenaria]
 gi|95115817|gb|ABF56203.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
            sp. avenaria]
 gi|95115823|gb|ABF56206.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
            sp. avenaria]
 gi|95115825|gb|ABF56207.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
            sp. avenaria]
          Length = 1262

 Score =  518 bits (1334), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 260/488 (53%), Positives = 328/488 (67%), Gaps = 85/488 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV +TN+ +RM+T+ +VLYYP KPL TTR                              
Sbjct: 813  MGVALTNYALRMETMMNVLYYPQKPLATTR------------------------------ 842

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYL+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 843  ---------------SMEYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 887

Query: 121  SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
            S+F+R+Y + E KRIG +  EQFEKP R     ++   YDKLDDDG++APG+RVSGDD++
Sbjct: 888  SLFYRAYTEQE-KRIGVNVLEQFEKPTRADTLRLKGGTYDKLDDDGVVAPGVRVSGDDII 946

Query: 180  IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
            IGKT  +  +  EL   T   +KRD ST LR++E GIVDQV+ T N +G +F K+R R+ 
Sbjct: 947  IGKTAPIAADAQELGQKTTLHTKRDVSTPLRSTENGIVDQVLFTTNTEGLRFVKVRTRTT 1006

Query: 240  RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
            ++PQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 1007 KVPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGLTPDLVINPHAIPSRMTIAHLVECLL 1066

Query: 266  --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
              V +  G+ GDATPF + V V +IS LL++ GYQ RG E+M+NGHTG+K+  QVFLGPT
Sbjct: 1067 SKVGAITGQEGDATPFTE-VTVDEISDLLEQAGYQKRGFEIMYNGHTGKKMRVQVFLGPT 1125

Query: 324  YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRER 383
            YYQRL+HMVDDKIH+RARGP+QIL RQP+EGRARDGGLRFGEMERDC I+HGAA FL+ER
Sbjct: 1126 YYQRLRHMVDDKIHARARGPLQILTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKER 1185

Query: 384  LFEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSM 442
            LF VSD Y +HVC+ CGL++ IA+++   +EC+ C NKT+ISQ+ +PYAAKLLFQEL++M
Sbjct: 1186 LFTVSDAYTVHVCDICGLMSPIASIKKGMYECRPCHNKTRISQIHIPYAAKLLFQELLAM 1245

Query: 443  NIAPRLMV 450
            NIA R+  
Sbjct: 1246 NIATRMFT 1253


>gi|82621735|gb|ABB86549.1| second largest subunit of RNA polymerase II [Phaeosphaeria nodorum]
 gi|95115801|gb|ABF56195.1| RNA polymerase II second largest subunit [Phaeosphaeria nodorum]
 gi|95115803|gb|ABF56196.1| RNA polymerase II second largest subunit [Phaeosphaeria nodorum]
 gi|95115805|gb|ABF56197.1| RNA polymerase II second largest subunit [Phaeosphaeria nodorum]
 gi|95115807|gb|ABF56198.1| RNA polymerase II second largest subunit [Phaeosphaeria nodorum]
 gi|95115809|gb|ABF56199.1| RNA polymerase II second largest subunit [Phaeosphaeria nodorum]
 gi|95115811|gb|ABF56200.1| RNA polymerase II second largest subunit [Phaeosphaeria nodorum]
          Length = 1262

 Score =  518 bits (1334), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 260/488 (53%), Positives = 328/488 (67%), Gaps = 85/488 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV +TN+ +RM+T+ +VLYYP KPL TTR                              
Sbjct: 813  MGVALTNYALRMETMMNVLYYPQKPLATTR------------------------------ 842

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYL+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 843  ---------------SMEYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 887

Query: 121  SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
            S+F+R+Y + E KRIG +  EQFEKP R     ++   YDKLDDDG++APG+RVSGDD++
Sbjct: 888  SLFYRAYTEQE-KRIGVNVLEQFEKPTRADTLRLKGGTYDKLDDDGVVAPGVRVSGDDII 946

Query: 180  IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
            IGKT  +  +  EL   T   +KRD ST LR++E GIVDQV+ T N +G +F K+R R+ 
Sbjct: 947  IGKTAPIAADAQELGQKTTLHTKRDVSTPLRSTENGIVDQVLFTTNTEGLRFVKVRTRTT 1006

Query: 240  RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
            ++PQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 1007 KVPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGLTPDLVINPHAIPSRMTIAHLVECLL 1066

Query: 266  --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
              V +  G+ GDATPF + V V +IS LL++ GYQ RG E+M+NGHTG+K+  QVFLGPT
Sbjct: 1067 SKVGAITGQEGDATPFTE-VTVDEISDLLEQAGYQKRGFEIMYNGHTGKKMRVQVFLGPT 1125

Query: 324  YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRER 383
            YYQRL+HMVDDKIH+RARGP+QIL RQP+EGRARDGGLRFGEMERDC I+HGAA FL+ER
Sbjct: 1126 YYQRLRHMVDDKIHARARGPLQILTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKER 1185

Query: 384  LFEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSM 442
            LF VSD Y +HVC+ CGL++ IA+++   +EC+ C NKT+ISQ+ +PYAAKLLFQEL++M
Sbjct: 1186 LFTVSDAYTVHVCDICGLMSPIASIKKGMYECRPCHNKTRISQIHIPYAAKLLFQELLAM 1245

Query: 443  NIAPRLMV 450
            NIA R+  
Sbjct: 1246 NIATRMFT 1253


>gi|95115819|gb|ABF56204.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
            sp. avenaria]
 gi|95115821|gb|ABF56205.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
            sp. avenaria]
          Length = 1262

 Score =  518 bits (1334), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 260/488 (53%), Positives = 328/488 (67%), Gaps = 85/488 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV +TN+ +RM+T+ +VLYYP KPL TTR                              
Sbjct: 813  MGVALTNYALRMETMMNVLYYPQKPLATTR------------------------------ 842

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYL+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 843  ---------------SMEYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 887

Query: 121  SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
            S+F+R+Y + E KRIG +  EQFEKP R     ++   YDKLDDDG++APG+RVSGDD++
Sbjct: 888  SLFYRAYTEQE-KRIGVNVLEQFEKPTRADTLRLKGGTYDKLDDDGVVAPGVRVSGDDII 946

Query: 180  IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
            IGKT  +  +  EL   T   +KRD ST LR++E GIVDQV+ T N +G +F K+R R+ 
Sbjct: 947  IGKTAPIAADAQELGQKTTLHTKRDVSTPLRSTENGIVDQVLFTTNTEGLRFVKVRTRTT 1006

Query: 240  RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
            ++PQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 1007 KVPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGLTPDLVINPHAIPSRMTIAHLVECLL 1066

Query: 266  --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
              V +  G+ GDATPF + V V +IS LL++ GYQ RG E+M+NGHTG+K+  QVFLGPT
Sbjct: 1067 SKVGAITGQEGDATPFTE-VTVDEISDLLEQAGYQKRGFEIMYNGHTGKKMRVQVFLGPT 1125

Query: 324  YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRER 383
            YYQRL+HMVDDKIH+RARGP+QIL RQP+EGRARDGGLRFGEMERDC I+HGAA FL+ER
Sbjct: 1126 YYQRLRHMVDDKIHARARGPLQILTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKER 1185

Query: 384  LFEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSM 442
            LF VSD Y +HVC+ CGL++ IA+++   +EC+ C NKT+ISQ+ +PYAAKLLFQEL++M
Sbjct: 1186 LFTVSDAYTVHVCDICGLMSPIASIKKGMYECRPCHNKTRISQIHIPYAAKLLFQELLAM 1245

Query: 443  NIAPRLMV 450
            NIA R+  
Sbjct: 1246 NIATRMFT 1253


>gi|388855609|emb|CCF50832.1| probable DNA-dependent RNA polymerase II RPB140 (RPB2) [Ustilago
            hordei]
          Length = 1241

 Score =  518 bits (1334), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 258/485 (53%), Positives = 329/485 (67%), Gaps = 84/485 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            +G+ I+NF  R D++ H+LYYP KPL TTR                              
Sbjct: 803  IGIPISNFISRADSMNHILYYPQKPLGTTR------------------------------ 832

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SME+LRFRELPAG N+IVAI+CY+GYNQEDSVI+N S+++RG FR
Sbjct: 833  ---------------SMEHLRFRELPAGQNAIVAIMCYSGYNQEDSVIMNQSSIDRGLFR 877

Query: 121  SVFFRSYKDAESKRIGD-QEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
            S+++R Y  AE K++G  Q E+FEKP+R T   M++  YDK+D DG+ APG RVSGDDV+
Sbjct: 878  SLYYRGYM-AEEKKVGVMQLEEFEKPHRDTTIRMKHGTYDKIDADGLCAPGTRVSGDDVI 936

Query: 180  IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
            IGKT  LP + +EL   +K  +K+D S  L+++E GI+DQV+LT N  G KF K+RVR+ 
Sbjct: 937  IGKTAPLPPDSEELGMRSKLHTKKDASISLKSTENGIIDQVLLTTNSHGNKFVKVRVRNS 996

Query: 240  RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
            R+PQ GDKFASRHGQKGT GI YRQE                                  
Sbjct: 997  RVPQTGDKFASRHGQKGTIGITYRQEDMPFSTEGVTPDIIINPHAIPSRMTIGHLVECLL 1056

Query: 266  --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
              V++  G+ GDATPF + + V+ +S++L+  GYQ RG EVM++GHTGRK+ AQV+LGPT
Sbjct: 1057 SKVAALSGQEGDATPFTE-LTVEAVSSILRGLGYQSRGLEVMYHGHTGRKLQAQVYLGPT 1115

Query: 324  YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRER 383
            YYQRLKHMVDDKIHSRARGPVQIL RQP+EGR+R GGLRFGEMERDC I+HG A FL+ER
Sbjct: 1116 YYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRGGGLRFGEMERDCMIAHGIAGFLKER 1175

Query: 384  LFEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMN 443
            +F+ SDPYRIHVC+ CGL A+AN++  T+EC+ C+N+T ISQ+ +PYAAKLL QELMS+N
Sbjct: 1176 MFDASDPYRIHVCDLCGLTALANLKKGTYECRSCRNRTAISQIHIPYAAKLLMQELMSVN 1235

Query: 444  IAPRL 448
            +A RL
Sbjct: 1236 VALRL 1240


>gi|95115789|gb|ABF56189.1| RNA polymerase II second largest subunit [Phaeosphaeria sp. S-93-48]
          Length = 1262

 Score =  518 bits (1333), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 260/488 (53%), Positives = 328/488 (67%), Gaps = 85/488 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV +TN+ +RM+T+ +VLYYP KPL TTR                              
Sbjct: 813  MGVALTNYALRMETMMNVLYYPQKPLATTR------------------------------ 842

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYL+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 843  ---------------SMEYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 887

Query: 121  SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
            S+F+R+Y + E KRIG +  EQFEKP R     ++   YDKLDDDG++APG+RVSGDD++
Sbjct: 888  SLFYRAYTEQE-KRIGVNVLEQFEKPTRADTLRLKGGTYDKLDDDGVVAPGVRVSGDDII 946

Query: 180  IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
            IGKT  +  +  EL   T   +KRD ST LR++E GIVDQV+ T N +G +F K+R R+ 
Sbjct: 947  IGKTAPIAADAQELGQKTTLHTKRDVSTPLRSTENGIVDQVLFTTNTEGLRFVKVRTRTT 1006

Query: 240  RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
            ++PQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 1007 KVPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGLTPDLVINPHAIPSRMTIAHLVECLL 1066

Query: 266  --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
              V +  G+ GDATPF + V V +IS LL++ GYQ RG E+M+NGHTG+K+  QVFLGPT
Sbjct: 1067 SKVGAITGQEGDATPFTE-VTVDEISDLLEQAGYQKRGFEIMYNGHTGKKMRVQVFLGPT 1125

Query: 324  YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRER 383
            YYQRL+HMVDDKIH+RARGP+QIL RQP+EGRARDGGLRFGEMERDC I+HGAA FL+ER
Sbjct: 1126 YYQRLRHMVDDKIHARARGPLQILTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKER 1185

Query: 384  LFEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSM 442
            LF VSD Y +HVC+ CGL++ IA+++   +EC+ C NKT+ISQ+ +PYAAKLLFQEL++M
Sbjct: 1186 LFTVSDAYTVHVCDICGLMSPIASIKKGMYECRPCHNKTRISQIHIPYAAKLLFQELLAM 1245

Query: 443  NIAPRLMV 450
            NIA R+  
Sbjct: 1246 NIATRMFT 1253


>gi|95115795|gb|ABF56192.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
            sp. tritici]
 gi|95115797|gb|ABF56193.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
            sp. tritici]
          Length = 1262

 Score =  518 bits (1333), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 260/488 (53%), Positives = 328/488 (67%), Gaps = 85/488 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV +TN+ +RM+T+ +VLYYP KPL TTR                              
Sbjct: 813  MGVALTNYALRMETMMNVLYYPQKPLATTR------------------------------ 842

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYL+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 843  ---------------SMEYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 887

Query: 121  SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
            S+F+R+Y + E KRIG +  EQFEKP R     ++   YDKLDDDG++APG+RVSGDD++
Sbjct: 888  SLFYRAYTEQE-KRIGVNVLEQFEKPTRADTLRLKGGTYDKLDDDGVVAPGVRVSGDDII 946

Query: 180  IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
            IGKT  +  +  EL   T   +KRD ST LR++E GIVDQV+ T N +G +F K+R R+ 
Sbjct: 947  IGKTAPIAADAQELGQKTTLHTKRDVSTPLRSTENGIVDQVLFTTNTEGLRFVKVRTRTT 1006

Query: 240  RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
            ++PQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 1007 KVPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGLTPDLVINPHAIPSRMTIAHLVECLL 1066

Query: 266  --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
              V +  G+ GDATPF + V V +IS LL++ GYQ RG E+M+NGHTG+K+  QVFLGPT
Sbjct: 1067 SKVGAITGQEGDATPFTE-VTVDEISDLLEQAGYQKRGFEIMYNGHTGKKMRVQVFLGPT 1125

Query: 324  YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRER 383
            YYQRL+HMVDDKIH+RARGP+QIL RQP+EGRARDGGLRFGEMERDC I+HGAA FL+ER
Sbjct: 1126 YYQRLRHMVDDKIHARARGPLQILTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKER 1185

Query: 384  LFEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSM 442
            LF VSD Y +HVC+ CGL++ IA+++   +EC+ C NKT+ISQ+ +PYAAKLLFQEL++M
Sbjct: 1186 LFTVSDAYTVHVCDICGLMSPIASIKKGMYECRPCHNKTRISQIHIPYAAKLLFQELLAM 1245

Query: 443  NIAPRLMV 450
            NIA R+  
Sbjct: 1246 NIATRMFT 1253


>gi|95115793|gb|ABF56191.1| RNA polymerase II second largest subunit [Phaeosphaeria avenaria f.
            sp. tritici]
          Length = 1262

 Score =  518 bits (1333), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 260/488 (53%), Positives = 328/488 (67%), Gaps = 85/488 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV +TN+ +RM+T+ +VLYYP KPL TTR                              
Sbjct: 813  MGVALTNYALRMETMMNVLYYPQKPLATTR------------------------------ 842

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYL+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 843  ---------------SMEYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 887

Query: 121  SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
            S+F+R+Y + E KRIG +  EQFEKP R     ++   YDKLDDDG++APG+RVSGDD++
Sbjct: 888  SLFYRAYTEQE-KRIGVNVLEQFEKPTRADTLRLKGGTYDKLDDDGVVAPGVRVSGDDII 946

Query: 180  IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
            IGKT  +  +  EL   T   +KRD ST LR++E GIVDQV+ T N +G +F K+R R+ 
Sbjct: 947  IGKTAPIAADAQELGQKTTLHTKRDVSTPLRSTENGIVDQVLFTTNTEGLRFVKVRTRTT 1006

Query: 240  RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
            ++PQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 1007 KVPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGLTPDLIINPHAIPSRMTIAHLVECLL 1066

Query: 266  --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
              V +  G+ GDATPF + V V +IS LL++ GYQ RG E+M+NGHTG+K+  QVFLGPT
Sbjct: 1067 SKVGAITGQEGDATPFTE-VTVDEISDLLEQAGYQKRGFEIMYNGHTGKKMRVQVFLGPT 1125

Query: 324  YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRER 383
            YYQRL+HMVDDKIH+RARGP+QIL RQP+EGRARDGGLRFGEMERDC I+HGAA FL+ER
Sbjct: 1126 YYQRLRHMVDDKIHARARGPLQILTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKER 1185

Query: 384  LFEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSM 442
            LF VSD Y +HVC+ CGL++ IA+++   +EC+ C NKT+ISQ+ +PYAAKLLFQEL++M
Sbjct: 1186 LFTVSDAYTVHVCDICGLMSPIASIKKGMYECRPCHNKTRISQIHIPYAAKLLFQELLAM 1245

Query: 443  NIAPRLMV 450
            NIA R+  
Sbjct: 1246 NIATRMFT 1253


>gi|353243888|emb|CCA75371.1| probable DNA-dependent RNA polymerase II RPB140 (RPB2)
            [Piriformospora indica DSM 11827]
          Length = 1223

 Score =  517 bits (1332), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 259/491 (52%), Positives = 330/491 (67%), Gaps = 89/491 (18%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG+ ++NF VRMDT+A++LYYP KPL TTR++                            
Sbjct: 768  MGISLSNFLVRMDTMANILYYPQKPLATTRAL---------------------------- 799

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                             E+L+FR+LPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 800  -----------------EWLKFRDLPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 842

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+++RSY D E        E+FEKP+R T   M++  YDKLDDDG+IAPG+ V G+D++I
Sbjct: 843  SIYYRSYMDMEKTAGQITLEEFEKPSRDTTLRMKHGNYDKLDDDGLIAPGMNVIGEDIII 902

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  LP +  EL   T R ++RD ST L+++E+GI+D V++T++ +G KF KIRVRS R
Sbjct: 903  GKTAPLPPDSQELGQRTDRHTRRDVSTPLKSTESGIIDHVLITVDGEGSKFVKIRVRSTR 962

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQ+GDKFASRHGQKGT GI YRQE                                   
Sbjct: 963  IPQVGDKFASRHGQKGTIGILYRQEDMPFSADGIVPDLIINPHAIPSRMTIGHLVECLLS 1022

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             V++  G+ GDATPF D + V+++S  L+  GYQ RG EVM++GHTG+K+ AQV+LGPTY
Sbjct: 1023 KVATLNGQEGDATPFTD-LTVEQVSHALRAAGYQSRGLEVMYHGHTGKKLQAQVYLGPTY 1081

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEME-------RDCQISHGAA 377
            YQRLKHMV+DKIHSRARGPVQIL RQP+EGR+RDGGLRFGEME       RDC ISHG A
Sbjct: 1082 YQRLKHMVEDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMEASQNSLIRDCMISHGIA 1141

Query: 378  QFLRERLFEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQ 437
             FL+ERLF+ SD YR+HVC+ CGL AIAN++  +FEC+ CKNKT +SQ+ +PYAAKLL Q
Sbjct: 1142 AFLKERLFDASDAYRLHVCDICGLTAIANLKKQSFECRSCKNKTAVSQLYIPYAAKLLIQ 1201

Query: 438  ELMSMNIAPRL 448
            EL +MNIA RL
Sbjct: 1202 ELQAMNIAARL 1212


>gi|451846356|gb|EMD59666.1| hypothetical protein COCSADRAFT_252499 [Cochliobolus sativus ND90Pr]
          Length = 1262

 Score =  515 bits (1327), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 260/488 (53%), Positives = 325/488 (66%), Gaps = 85/488 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV +TNF +RM+T+ +VLYYP KPL TTR                              
Sbjct: 813  MGVALTNFALRMETMMNVLYYPQKPLATTR------------------------------ 842

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYL+FRELPAG N+IVAI  Y GYNQEDSVI+N S+++RG FR
Sbjct: 843  ---------------SMEYLKFRELPAGQNAIVAIATYGGYNQEDSVIMNQSSIDRGLFR 887

Query: 121  SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
            S+F+R+Y + E KRIG +  EQFEKP R     ++   YDKLDDDG++APG+RVSGDD++
Sbjct: 888  SLFYRAYTEQE-KRIGVNVLEQFEKPTRADTLRLKGGTYDKLDDDGVVAPGVRVSGDDII 946

Query: 180  IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
            IGKT  +  +  EL   T   +KRD ST LR++E GIVDQV+ T N +G +F K+R R+ 
Sbjct: 947  IGKTAPIAADAQELGQKTTLHTKRDVSTPLRSTENGIVDQVLFTTNTEGLRFVKVRTRTT 1006

Query: 240  RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
            ++PQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 1007 KVPQIGDKFASRHGQKGTIGITYRQEDMPFTREGVTPDLIINPHAIPSRMTIAHLVECLL 1066

Query: 266  --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
              V +  G+ GDATPF D V V +IS LL++ GYQ RG E+M+NGHTG+K+  Q+FLGPT
Sbjct: 1067 SKVGAITGQEGDATPFTD-VTVDQISQLLEDAGYQKRGFEIMYNGHTGKKLRTQIFLGPT 1125

Query: 324  YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRER 383
            YYQRL+HMVDDKIH+RARGP+QIL RQP+EGRARDGGLRFGEMERDC I+HGAA FL+ER
Sbjct: 1126 YYQRLRHMVDDKIHARARGPLQILTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKER 1185

Query: 384  LFEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSM 442
            LF VSD Y +HVC+ CGL++ IA ++   +EC+ C NKT+ISQ+ +PYAAKLLFQEL++M
Sbjct: 1186 LFTVSDAYTVHVCDICGLMSPIAQLKKGLYECRPCHNKTRISQIHIPYAAKLLFQELLAM 1245

Query: 443  NIAPRLMV 450
            NIA R+  
Sbjct: 1246 NIATRMFT 1253


>gi|67904266|ref|XP_682389.1| hypothetical protein AN9120.2 [Aspergillus nidulans FGSC A4]
 gi|40742763|gb|EAA61953.1| hypothetical protein AN9120.2 [Aspergillus nidulans FGSC A4]
          Length = 1028

 Score =  515 bits (1326), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 264/486 (54%), Positives = 327/486 (67%), Gaps = 85/486 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV++TNF  RM+T+A++LYYP KPL TTR                              
Sbjct: 580  MGVFLTNFDQRMETMANILYYPQKPLATTR------------------------------ 609

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SME+LRFRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 610  ---------------SMEFLRFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 654

Query: 121  SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
            S+F+R+Y D+E K +G    E+FEKP R    GMR   YDKLD+DGI+ PG+RVSG+D++
Sbjct: 655  SLFYRTYSDSE-KMVGLTVVERFEKPMRSDTIGMRKGTYDKLDEDGIVNPGVRVSGEDII 713

Query: 180  IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
            IGKT  L  + +EL   TK  +K D ST LR++E GIVDQV++T   D  +  K+R+R  
Sbjct: 714  IGKTAPLAPDAEELGQRTKNHTKLDVSTPLRSTENGIVDQVLVTTTPDSLRSVKVRMRMT 773

Query: 240  RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
            ++PQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 774  KVPQIGDKFASRHGQKGTIGITYRQEDMPFTREGVTPDLIINPHAIPSRMTIAHLIECQL 833

Query: 266  --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
              VS+ +G  GDATPF D V V  IS LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 834  SKVSALRGFEGDATPFTD-VTVDSISRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 892

Query: 324  YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRER 383
            YYQRL+HMVDDKIH+RARGP QIL RQP+EGRARDGGLRFGEMERDC I+HGA+ FL+ER
Sbjct: 893  YYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKER 952

Query: 384  LFEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSM 442
            LF+VSDP+R+H+C+ CGL+  IA ++   FEC+ C NK +ISQV +PYAAKLLFQEL +M
Sbjct: 953  LFDVSDPFRVHICDDCGLMTPIAKLKKGLFECRLCNNKHRISQVHIPYAAKLLFQELAAM 1012

Query: 443  NIAPRL 448
            NI+ R+
Sbjct: 1013 NISARM 1018


>gi|259485464|tpe|CBF82508.1| TPA: DNA-directed RNA polymerase Fragment (EC 2.7.7.6)
            [Source:UniProtKB/TrEMBL;Acc:Q9UV95] [Aspergillus
            nidulans FGSC A4]
          Length = 1252

 Score =  515 bits (1326), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 264/486 (54%), Positives = 327/486 (67%), Gaps = 85/486 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV++TNF  RM+T+A++LYYP KPL TTR                              
Sbjct: 804  MGVFLTNFDQRMETMANILYYPQKPLATTR------------------------------ 833

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SME+LRFRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 834  ---------------SMEFLRFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 878

Query: 121  SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
            S+F+R+Y D+E K +G    E+FEKP R    GMR   YDKLD+DGI+ PG+RVSG+D++
Sbjct: 879  SLFYRTYSDSE-KMVGLTVVERFEKPMRSDTIGMRKGTYDKLDEDGIVNPGVRVSGEDII 937

Query: 180  IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
            IGKT  L  + +EL   TK  +K D ST LR++E GIVDQV++T   D  +  K+R+R  
Sbjct: 938  IGKTAPLAPDAEELGQRTKNHTKLDVSTPLRSTENGIVDQVLVTTTPDSLRSVKVRMRMT 997

Query: 240  RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
            ++PQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 998  KVPQIGDKFASRHGQKGTIGITYRQEDMPFTREGVTPDLIINPHAIPSRMTIAHLIECQL 1057

Query: 266  --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
              VS+ +G  GDATPF D V V  IS LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 1058 SKVSALRGFEGDATPFTD-VTVDSISRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 1116

Query: 324  YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRER 383
            YYQRL+HMVDDKIH+RARGP QIL RQP+EGRARDGGLRFGEMERDC I+HGA+ FL+ER
Sbjct: 1117 YYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKER 1176

Query: 384  LFEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSM 442
            LF+VSDP+R+H+C+ CGL+  IA ++   FEC+ C NK +ISQV +PYAAKLLFQEL +M
Sbjct: 1177 LFDVSDPFRVHICDDCGLMTPIAKLKKGLFECRLCNNKHRISQVHIPYAAKLLFQELAAM 1236

Query: 443  NIAPRL 448
            NI+ R+
Sbjct: 1237 NISARM 1242


>gi|343425328|emb|CBQ68864.1| probable DNA-dependent RNA polymerase II RPB140 (RPB2) [Sporisorium
            reilianum SRZ2]
          Length = 1242

 Score =  515 bits (1326), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 259/485 (53%), Positives = 326/485 (67%), Gaps = 84/485 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            + V I+NF  R D++ HVL YP KPL TTR                              
Sbjct: 804  VSVNISNFLSRADSMNHVLCYPQKPLGTTR------------------------------ 833

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SME+L+FRELPAG N IVAI+CY+GYNQEDSVI+N S+++RG FR
Sbjct: 834  ---------------SMEHLKFRELPAGTNCIVAIMCYSGYNQEDSVIMNQSSIDRGLFR 878

Query: 121  SVFFRSYKDAESKRIGD-QEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
            S+++R Y  AE K++G  Q E+FEKPNR T   M++  YDK+D DG  APG RVSGDDV+
Sbjct: 879  SMYYRGYV-AEEKKVGVMQLEEFEKPNRDTTIRMKHGTYDKIDADGFCAPGTRVSGDDVI 937

Query: 180  IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
            IGKT  LP + +EL   +K  +K+D S  L+++E GI+DQV+LT N  G KF K+RVR+ 
Sbjct: 938  IGKTAPLPPDSEELGMRSKLHTKKDASISLKSTENGIIDQVLLTTNSHGNKFVKVRVRNT 997

Query: 240  RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
            R+PQ GDKFASRHGQKGT GI YRQE                                  
Sbjct: 998  RVPQTGDKFASRHGQKGTIGITYRQEDMPFSAEGVTPDIIINPHAIPSRMTIGHLVECLL 1057

Query: 266  --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
              V++  G+ GDATPF + + V+ +S++L+  GYQ RG EVM++GHTGRK+ AQV+LGPT
Sbjct: 1058 SKVAALSGQEGDATPFTE-LTVEAVSSILRGLGYQSRGLEVMYHGHTGRKLQAQVYLGPT 1116

Query: 324  YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRER 383
            YYQRLKHMVDDKIHSRARGPVQIL RQP+EGR+R GGLRFGEMERDC I+HG A FL+ER
Sbjct: 1117 YYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRGGGLRFGEMERDCMIAHGIAGFLKER 1176

Query: 384  LFEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMN 443
            +F+VSDPYRIHVC+ CGL A+AN++  T+EC+ C+N+T ISQ+ +PYAAKLL QELMS+N
Sbjct: 1177 MFDVSDPYRIHVCDLCGLTALANLKKGTYECRSCRNRTAISQIHIPYAAKLLMQELMSVN 1236

Query: 444  IAPRL 448
            +A RL
Sbjct: 1237 VALRL 1241


>gi|6606093|gb|AAF19059.1|AF107787_1 DNA-dependent RNA polymerase II RPB140 [Candida albicans]
          Length = 1210

 Score =  514 bits (1324), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 254/472 (53%), Positives = 321/472 (68%), Gaps = 83/472 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV++TN+ VRMDT+A++LYYP KPL TTR                              
Sbjct: 785  MGVFLTNYSVRMDTMANILYYPQKPLGTTR------------------------------ 814

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYL+FRELPAG N+IVAI CY+GYNQEDS+I+N S+++RG FR
Sbjct: 815  ---------------SMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFR 859

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+FFRSY D E ++     E FEKP R     +++  Y+KLD+DG+IAPG+RVSG+D++I
Sbjct: 860  SLFFRSYMDIEKRQGMKALETFEKPTRSDTLRLKHGTYEKLDEDGLIAPGVRVSGEDIII 919

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  +P + +EL   T+  +KRD ST LR++E+GIVDQV+LT N DG KF K+R+R+ +
Sbjct: 920  GKTTPIPADAEELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDGSKFVKVRMRTTK 979

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            +PQIGDKFASRHGQKGT G+ YR E                                   
Sbjct: 980  VPQIGDKFASRHGQKGTIGVTYRHEDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLS 1039

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VSS  G  GDA+PF D V  ++ISTLL+++GYQ RG EVM+NGHTG+K+ AQVF GPTY
Sbjct: 1040 KVSSLSGFEGDASPFTD-VTTEQISTLLRDHGYQSRGFEVMYNGHTGKKLMAQVFFGPTY 1098

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRL+HMVDDKIH+RARGPVQ+L RQP+EGR+RDGGLRFGEMERDC I+HGAA FL+ERL
Sbjct: 1099 YQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAGFLKERL 1158

Query: 385  FEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLL 435
             E SD +R+HVC  CGL++ IAN++ N FEC+ CKNKT I Q+ +PYAAKLL
Sbjct: 1159 MEASDAFRVHVCGMCGLMSVIANLKKNQFECRSCKNKTNIYQIHIPYAAKLL 1210


>gi|242824711|ref|XP_002488312.1| DNA-dependent RNA polymerase II RPB140 [Talaromyces stipitatus ATCC
            10500]
 gi|218713233|gb|EED12658.1| DNA-dependent RNA polymerase II RPB140 [Talaromyces stipitatus ATCC
            10500]
          Length = 1256

 Score =  513 bits (1322), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 261/486 (53%), Positives = 325/486 (66%), Gaps = 84/486 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV++TNF  RM+T+A++LYYP KPL TTR                              
Sbjct: 807  MGVFLTNFDQRMETMANILYYPQKPLATTR------------------------------ 836

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 837  ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 881

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+F+R+Y +AE K      E+FEKP R    GMR   YDK++DDG++APG+RV+G+D++I
Sbjct: 882  SLFYRTYTEAERKLGLQTIEKFEKPMRSDTLGMRKGTYDKIEDDGLVAPGVRVTGEDIII 941

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVD-GYKFCKIRVRSV 239
            GKT  L    +EL   TK  +K D ST LR +E+GIVDQV+LT   D   +  K+R+R+ 
Sbjct: 942  GKTAPLAPESEELGQRTKAHTKVDVSTPLRATESGIVDQVLLTTGNDPDLRLVKVRMRTT 1001

Query: 240  RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
            +IPQIGDKFASRHGQKGT GI YR E                                  
Sbjct: 1002 KIPQIGDKFASRHGQKGTIGITYRHEDMPFTREGVVPDLIINPHAIPSRMTIAHLIECQL 1061

Query: 266  --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
              VSS +G  GDATPF D V V  +S LL+E+GYQ RG EVM+NGHTG+K+ AQVFLGPT
Sbjct: 1062 SKVSSLRGFEGDATPFTD-VTVDSVSRLLREHGYQSRGFEVMYNGHTGKKLKAQVFLGPT 1120

Query: 324  YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRER 383
            YYQRL+HMVDDKIH+RARGP QIL RQP+EGRARDGGLRFGEMERDC I+HGA+ FL+ER
Sbjct: 1121 YYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKER 1180

Query: 384  LFEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSM 442
            LF+VSDP+R+H+C+ CGL+  IA ++   FEC+ C NK +ISQV +PYAAKLLFQEL +M
Sbjct: 1181 LFDVSDPFRVHICDDCGLMTPIAKLKKGLFECRLCNNKHRISQVHIPYAAKLLFQELAAM 1240

Query: 443  NIAPRL 448
            NIA R+
Sbjct: 1241 NIAARM 1246


>gi|212545975|ref|XP_002153141.1| DNA-dependent RNA polymerase II RPB140 [Talaromyces marneffei ATCC
            18224]
 gi|210064661|gb|EEA18756.1| DNA-dependent RNA polymerase II RPB140 [Talaromyces marneffei ATCC
            18224]
          Length = 1254

 Score =  513 bits (1321), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 261/488 (53%), Positives = 325/488 (66%), Gaps = 84/488 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV++TNF  RM+T+A++LYYP KPL TTR                              
Sbjct: 805  MGVFLTNFDQRMETMANILYYPQKPLATTR------------------------------ 834

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 835  ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 879

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+F+R+Y +AE K      E+FEKP R    GMR   YDK++DDG++APG+RV+G+D++I
Sbjct: 880  SLFYRTYTEAERKLGLQTIEKFEKPMRSDTLGMRKGTYDKIEDDGLVAPGVRVTGEDIII 939

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVD-GYKFCKIRVRSV 239
            GKT  L    +EL   TK  +K D ST LR +E+GIVDQV+LT   D   +  K+R+R+ 
Sbjct: 940  GKTAPLAPESEELGQRTKAHTKVDVSTPLRATESGIVDQVLLTTGNDPDLRLVKVRMRTT 999

Query: 240  RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
            +IPQIGDKFASRHGQKGT GI YR E                                  
Sbjct: 1000 KIPQIGDKFASRHGQKGTIGITYRHEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQL 1059

Query: 266  --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
              VSS +G  GDATPF D V V  +S LL+E+GYQ RG EVM+NGHTG+K+ AQVFLGPT
Sbjct: 1060 SKVSSLRGFEGDATPFTD-VTVDSVSRLLREHGYQSRGFEVMYNGHTGKKLKAQVFLGPT 1118

Query: 324  YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRER 383
            YYQRL+HMVDDKIH+RARGP QIL RQP+EGRARDGGLRFGEMERDC I+HGA+ FL+ER
Sbjct: 1119 YYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKER 1178

Query: 384  LFEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSM 442
            LF+VSDP+R+H+C+ CGL+  IA ++   FEC+ C NK +ISQV +PYAAKLLFQEL +M
Sbjct: 1179 LFDVSDPFRVHICDDCGLMTPIAKLKKGLFECRLCNNKHRISQVHIPYAAKLLFQELAAM 1238

Query: 443  NIAPRLMV 450
            NIA R+  
Sbjct: 1239 NIAARMFT 1246


>gi|396481244|ref|XP_003841192.1| similar to DNA-dependent RNA polymerase II second largest subunit
            [Leptosphaeria maculans JN3]
 gi|312217766|emb|CBX97713.1| similar to DNA-dependent RNA polymerase II second largest subunit
            [Leptosphaeria maculans JN3]
          Length = 1360

 Score =  513 bits (1320), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 257/488 (52%), Positives = 325/488 (66%), Gaps = 85/488 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV +TN+ +RM+T+ +VLYYP KPL TTR                              
Sbjct: 911  MGVALTNYALRMETMMNVLYYPQKPLATTR------------------------------ 940

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYL+FRELPAG N+IVAI  Y GYNQEDSVI+N S+++RG FR
Sbjct: 941  ---------------SMEYLKFRELPAGQNAIVAIATYGGYNQEDSVIMNQSSIDRGLFR 985

Query: 121  SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
            S+F+R+Y + E KRIG +  EQFEKP R     ++   YDKLDDDG++APG+RVSGDD++
Sbjct: 986  SLFYRAYTEQE-KRIGVNVLEQFEKPTRADTLRLKGGTYDKLDDDGVVAPGVRVSGDDII 1044

Query: 180  IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
            IGKT  +  +  EL   T   +KRD ST LR++E GIVDQV+ T N +G +F K+R R+ 
Sbjct: 1045 IGKTAPIATDAQELGQKTTLHTKRDVSTPLRSTENGIVDQVLFTTNTEGLRFVKVRTRTT 1104

Query: 240  RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
            ++PQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 1105 KVPQIGDKFASRHGQKGTIGITYRQEDMPFSREGLTPDLIINPHAIPSRMTIAHLVECLL 1164

Query: 266  --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
              V + +G  GDATPF D + V +IS +L+  GYQ RG E+M+NGHTG+K+  Q+FLGPT
Sbjct: 1165 SKVGAIEGREGDATPFTD-ITVDQISEILESKGYQKRGFEIMYNGHTGKKMRTQIFLGPT 1223

Query: 324  YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRER 383
            YYQRL+HMVDDKIH+RARGP+QIL RQP+EGRARDGGLRFGEMERDC I+HGAA FL+ER
Sbjct: 1224 YYQRLRHMVDDKIHARARGPLQILTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKER 1283

Query: 384  LFEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSM 442
            LF VSD Y +HVC+ CGL++ IA ++   +EC+ C+NKT+ISQ+ +PYAAKLLFQEL++M
Sbjct: 1284 LFTVSDAYTVHVCDICGLMSPIAQLKKGQYECRPCQNKTRISQIHIPYAAKLLFQELLAM 1343

Query: 443  NIAPRLMV 450
            NIA R+  
Sbjct: 1344 NIATRMFT 1351


>gi|392580422|gb|EIW73549.1| hypothetical protein TREMEDRAFT_70991 [Tremella mesenterica DSM 1558]
          Length = 1214

 Score =  511 bits (1317), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 255/487 (52%), Positives = 325/487 (66%), Gaps = 85/487 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV++TN+ +RMDT+A++LYYP KPL TTR                              
Sbjct: 769  MGVHLTNYQLRMDTMANILYYPQKPLATTR------------------------------ 798

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYL+F ELPAG N+IVAI+CY+GYNQEDSVI+N S+++RG FR
Sbjct: 799  ---------------SMEYLKFSELPAGQNAIVAIMCYSGYNQEDSVIMNQSSIDRGLFR 843

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAI---YDKLDDDGIIAPGLRVSGDD 177
            S+++RSY DAE     ++ E  EKP+R+    M+      Y KLD DG+IAP   V+GDD
Sbjct: 844  SLYYRSYTDAEKMTGMEKVETIEKPDRKDTLRMKMGSSDRYAKLDIDGLIAPATNVNGDD 903

Query: 178  VVIGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVR 237
            ++IGKT  +PE  +EL   T   +KRD ST L+++E G+VDQVML+ N DG+KF KIR+R
Sbjct: 904  IIIGKTAPIPEESEELGQRTSLHTKRDVSTPLKSTEQGVVDQVMLSTNGDGHKFVKIRIR 963

Query: 238  SVRIPQIGDKFASRHGQKGTCGIQYRQE-------------------------------- 265
            S R+PQIGDKFASRHGQKGT GI YRQE                                
Sbjct: 964  STRVPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVEC 1023

Query: 266  ----VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLG 321
                +S+  G  GDATPF + + V+K+S  L++ GYQ RG EVM++GHTGRK+ AQ++ G
Sbjct: 1024 LLSKLSTMTGSEGDATPFTE-LTVEKVSKFLRQRGYQSRGLEVMYHGHTGRKLQAQIYFG 1082

Query: 322  PTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLR 381
            PTYYQRLKHMVDDKIH+RARGP+QIL RQP+EGR+RDGGLRFGEMERDC ISHG A FL+
Sbjct: 1083 PTYYQRLKHMVDDKIHARARGPLQILTRQPVEGRSRDGGLRFGEMERDCMISHGIAAFLK 1142

Query: 382  ERLFEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMS 441
            ER+++ SD +R+HVC+ CGL+AIAN++   F C  C+N TQISQ+ +PYAAKLLFQEL +
Sbjct: 1143 ERMYDSSDGFRVHVCDQCGLMAIANLKKQEFHCSVCRNSTQISQIYIPYAAKLLFQELQA 1202

Query: 442  MNIAPRL 448
            MNIA R+
Sbjct: 1203 MNIAVRM 1209


>gi|358054058|dbj|GAA99857.1| hypothetical protein E5Q_06560 [Mixia osmundae IAM 14324]
          Length = 1327

 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 256/485 (52%), Positives = 320/485 (65%), Gaps = 82/485 (16%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVY+TN+ VR+DT+A++L+YP KPL TTR                              
Sbjct: 842  MGVYLTNYQVRLDTMANILFYPQKPLATTR------------------------------ 871

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SM+YL FR+LPAG N+IVAILCY+GYNQEDSVI+N SA++RG FR
Sbjct: 872  ---------------SMDYLHFRQLPAGQNAIVAILCYSGYNQEDSVIMNQSAIDRGLFR 916

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S ++R+Y D E ++   Q E FEKP+R     ++   YDKL DDG +  G +V G D++I
Sbjct: 917  SFYYRTYMDTEKRQGALQMESFEKPSRLDTLRLKRGTYDKLGDDGFVRVGEQVRGGDIII 976

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  +  + +EL   TK   KRD ST L+++E G +D+VM+T N DG KF K+RVRS R
Sbjct: 977  GKTAPIAPDSEELGQRTKDHVKRDVSTPLKSTEEGYIDRVMITTNADGLKFAKVRVRSTR 1036

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQ------------------------------------ 264
            IPQ GDKFASRHGQKGT GI Y+Q                                    
Sbjct: 1037 IPQTGDKFASRHGQKGTIGITYQQNDMPFTSEGIVPDLIINPHAIPSRMTIGHLVECLLS 1096

Query: 265  EVSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            +VS+  G+ GDATPF+D V V  +S++L+  G+Q RG E+M NGHTGRK+ AQV+LGPTY
Sbjct: 1097 KVSALTGQEGDATPFSD-VTVDSVSSVLKAQGFQDRGLEIMSNGHTGRKLAAQVYLGPTY 1155

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQIL RQP+EGR+RDGGLRFGEMERDC I+HG A FL+ER+
Sbjct: 1156 YQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMIAHGVAGFLKERM 1215

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FE SD +RIHVC+ CG+ AIAN+   TFEC+ CKNKT ISQV +PY+AKLLF EL +MNI
Sbjct: 1216 FEASDAFRIHVCDICGMTAIANLMKQTFECRACKNKTAISQVLVPYSAKLLFSELQAMNI 1275

Query: 445  APRLM 449
            A R++
Sbjct: 1276 ATRIV 1280


>gi|67810650|gb|AAY82001.1| RNA polymerase II second largest subunit [Sphagnum sp. JL-2005]
          Length = 704

 Score =  508 bits (1309), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 251/476 (52%), Positives = 321/476 (67%), Gaps = 85/476 (17%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+ +RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 231 MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA----------------------------- 261

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN++VAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 262 ----------------MEHLHFRQLPAGINAVVAIACYSGYNQEDSVIMNQSSIDRGFFR 305

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+F+RSY+D E ++    +E+FE+PNR+   GMR+  YD+LDDDG+  PG RVSG+DV+I
Sbjct: 306 SIFYRSYRDEEKRQGTLIKEEFERPNRENTTGMRHGSYDELDDDGLAPPGTRVSGEDVII 365

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  LP++++  +   +R++KRD ST LR+SE+G++DQV+LT N DG +F KIRVRS+R
Sbjct: 366 GKTTPLPQDDNASQA--QRYTKRDQSTCLRHSESGMIDQVLLTTNADGLRFVKIRVRSIR 423

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKF+SRHGQK T G+ Y QE                                   
Sbjct: 424 IPQIGDKFSSRHGQKCTVGMTYTQEDMPWTQEGITPDIIVNPHAIPSRMTIGQLIECIMG 483

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V+++ G+ GDATPF DA  V  IS  L + GYQ+RG EVM+NGHTGR+++A +FLGPTY
Sbjct: 484 KVAAHMGKEGDATPFTDAT-VDNISKALHKCGYQMRGFEVMYNGHTGRRLSAHIFLGPTY 542

Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
           YQRLKHM+DDKIHSR RGPVQIL RQP EGR+R GGLRFGEMERDC I+HGAA FL+ERL
Sbjct: 543 YQRLKHMMDDKIHSRGRGPVQILTRQPAEGRSRVGGLRFGEMERDCMIAHGAAHFLKERL 602

Query: 385 FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYA-AKLLFQEL 439
           F+ SD YR+HVC  CGLIAIAN++ NT+EC+ CKNK  +      YA     FQ+L
Sbjct: 603 FDQSDAYRVHVCEHCGLIAIANLKKNTYECRACKNKQTLCSALYHYALXTFFFQKL 658


>gi|321257963|ref|XP_003193762.1| DNA-dependent RNA polymerase II RPB140 [Cryptococcus gattii WM276]
 gi|317460232|gb|ADV21975.1| DNA-dependent RNA polymerase II RPB140, putative [Cryptococcus gattii
            WM276]
          Length = 1193

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 256/487 (52%), Positives = 322/487 (66%), Gaps = 85/487 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV +TN+ +RMDT+ +VLYYP KPL TTR                              
Sbjct: 748  MGVCLTNYQLRMDTMVNVLYYPQKPLATTR------------------------------ 777

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYL+F ELPAG N+IVAI+CY+GYNQEDSVI+N S+++RG FR
Sbjct: 778  ---------------SMEYLKFSELPAGQNAIVAIMCYSGYNQEDSVIMNQSSIDRGLFR 822

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAI---YDKLDDDGIIAPGLRVSGDD 177
            S++FRSY D E  +   + E  EKP+R     M++     Y KLD DG++APG  V+GDD
Sbjct: 823  SLYFRSYTDTEKMKGMVKAETIEKPDRNETLRMKHGTSDRYAKLDVDGLVAPGTNVNGDD 882

Query: 178  VVIGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVR 237
            ++IGKT  LPE+ +EL   T+  +KRD ST L+++E G+VDQVML+ N +G  F KIRVR
Sbjct: 883  ILIGKTAPLPEDSEELGQRTQLHTKRDISTPLKSTEQGVVDQVMLSTNGEGNMFVKIRVR 942

Query: 238  SVRIPQIGDKFASRHGQKGTCGIQYRQE-------------------------------- 265
            S R+PQIGDKFASRHGQKGT GI YRQE                                
Sbjct: 943  STRVPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGLVPDIIINPHAIPSRMTIGHLVEC 1002

Query: 266  ----VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLG 321
                VS+  G  GDATPF + + V+ +S +L+  GYQ RG EV+++GHTGRK+ AQV+ G
Sbjct: 1003 LLSKVSTLTGAEGDATPFTE-LTVEAVSKVLRAKGYQSRGFEVLYHGHTGRKLQAQVYFG 1061

Query: 322  PTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLR 381
            PTYYQRLKHMVDDKIH+RARGP+QIL RQP+EGR+RDGGLRFGEMERDC ISHG A FL+
Sbjct: 1062 PTYYQRLKHMVDDKIHARARGPLQILTRQPVEGRSRDGGLRFGEMERDCMISHGIAGFLK 1121

Query: 382  ERLFEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMS 441
            ER+++ SD +RIHVC+ CGL+A+AN++   F C  C+N TQISQV +PYAAKLLFQEL +
Sbjct: 1122 ERMYDSSDAFRIHVCDICGLMAVANLKKQEFYCSVCRNSTQISQVYIPYAAKLLFQELQA 1181

Query: 442  MNIAPRL 448
            MNIA R+
Sbjct: 1182 MNIACRM 1188


>gi|58266096|ref|XP_570204.1| DNA-dependent RNA polymerase II RPB140 [Cryptococcus neoformans var.
            neoformans JEC21]
 gi|57226437|gb|AAW42897.1| DNA-dependent RNA polymerase II RPB140, putative [Cryptococcus
            neoformans var. neoformans JEC21]
          Length = 1193

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 256/487 (52%), Positives = 322/487 (66%), Gaps = 85/487 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV +TN+ +RMDT+ +VLYYP KPL TTR                              
Sbjct: 748  MGVCLTNYQLRMDTMVNVLYYPQKPLATTR------------------------------ 777

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYL+F ELPAG N+IVAI+CY+GYNQEDSVI+N S+++RG FR
Sbjct: 778  ---------------SMEYLKFSELPAGQNAIVAIMCYSGYNQEDSVIMNQSSIDRGLFR 822

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAI---YDKLDDDGIIAPGLRVSGDD 177
            S++FRSY D E  +   + E  EKP+R     M++     Y KLD DG++APG  V+GDD
Sbjct: 823  SLYFRSYTDTEKMKGMVKAETIEKPDRNETLRMKHGTGDRYAKLDVDGLVAPGTNVNGDD 882

Query: 178  VVIGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVR 237
            ++IGKT  LPE+ +EL   T+  +KRD ST L+++E G+VDQVML+ N +G  F KIRVR
Sbjct: 883  ILIGKTAPLPEDSEELGQRTQLHTKRDISTPLKSTEQGVVDQVMLSTNGEGNMFVKIRVR 942

Query: 238  SVRIPQIGDKFASRHGQKGTCGIQYRQE-------------------------------- 265
            S R+PQIGDKFASRHGQKGT GI YRQE                                
Sbjct: 943  STRVPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGLVPDIIINPHAIPSRMTIGHLVEC 1002

Query: 266  ----VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLG 321
                VS+  G  GDATPF + + V+ +S +L+  GYQ RG EV+++GHTGRK+ AQV+ G
Sbjct: 1003 LLSKVSTLTGAEGDATPFTE-LTVEAVSKVLRAKGYQSRGFEVLYHGHTGRKLQAQVYFG 1061

Query: 322  PTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLR 381
            PTYYQRLKHMVDDKIH+RARGP+QIL RQP+EGR+RDGGLRFGEMERDC ISHG A FL+
Sbjct: 1062 PTYYQRLKHMVDDKIHARARGPLQILTRQPVEGRSRDGGLRFGEMERDCMISHGIAGFLK 1121

Query: 382  ERLFEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMS 441
            ER+++ SD +RIHVC+ CGL+A+AN++   F C  C+N TQISQV +PYAAKLLFQEL +
Sbjct: 1122 ERMYDSSDAFRIHVCDVCGLMAVANLKKQEFYCSVCRNSTQISQVYIPYAAKLLFQELQA 1181

Query: 442  MNIAPRL 448
            MNIA R+
Sbjct: 1182 MNIACRM 1188


>gi|298705314|emb|CBJ49004.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 1277

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 257/492 (52%), Positives = 318/492 (64%), Gaps = 88/492 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG+Y +N+ +RMDTLAHVL+YP KPLVTTR+                             
Sbjct: 821  MGIYASNYQLRMDTLAHVLHYPEKPLVTTRA----------------------------- 851

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                            ME+L FRELP+G N IV I+ Y+GYNQEDS+I+N SAV+RG FR
Sbjct: 852  ----------------MEHLHFRELPSGFNVIVGIMVYSGYNQEDSLIMNQSAVDRGLFR 895

Query: 121  SVFFRSYKDAES--KRIGD----QEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVS 174
            S FFR+  D E   + +GD      E FE+P R+   GM++  YDKL++DG++APG RVS
Sbjct: 896  SSFFRTLNDQEKAGRGMGDMAVLSAESFERPARENTAGMKHGNYDKLEEDGLVAPGTRVS 955

Query: 175  GDDVVIGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKI 234
            G DV+IGKT  L      + G     SK+D ST +R+ E GIVD+VMLT N +G+KFCK+
Sbjct: 956  GTDVLIGKTTPLGGGVAGVTGGPGHRSKKDSSTVMRSHEDGIVDRVMLTTNQEGFKFCKV 1015

Query: 235  RVRSVRIPQIGDKFASRHGQKGTCGIQYRQE----------------------------- 265
            R+R+VR+PQIGDKFASRHGQKGT G+ YRQE                             
Sbjct: 1016 RIRNVRVPQIGDKFASRHGQKGTIGMTYRQEDMPWSIDGIVPDIIVNPHAIPSRMTIAQL 1075

Query: 266  -------VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQV 318
                   V    G  GDATPF D V V  +S+ L + G+Q  GNEVM++GHTGR +N +V
Sbjct: 1076 IECLLGKVGVLTGTEGDATPFTD-VTVANVSSTLHKIGFQKHGNEVMYSGHTGRMLNTKV 1134

Query: 319  FLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQ 378
            FLGPT+YQRLKH+VDDKIHSR+RGPV  L RQPMEGR RDGGLR GEMERDC ISHG A 
Sbjct: 1135 FLGPTFYQRLKHLVDDKIHSRSRGPVMNLTRQPMEGRGRDGGLRMGEMERDCLISHGCAN 1194

Query: 379  FLRERLFEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQE 438
            FLR+RLF  SD YR+HVC+ CGLIA+AN+R  +FEC+GCK K+ +SQ+ +PYA KLLFQE
Sbjct: 1195 FLRDRLFINSDAYRVHVCDKCGLIAVANLRKMSFECRGCKGKSDVSQIHVPYACKLLFQE 1254

Query: 439  LMSMNIAPRLMV 450
            LM+M IAPR+ V
Sbjct: 1255 LMAMCIAPRMFV 1266


>gi|308798899|ref|XP_003074229.1| DNA-directed RNA polymerase (ISS) [Ostreococcus tauri]
 gi|116000401|emb|CAL50081.1| DNA-directed RNA polymerase (ISS) [Ostreococcus tauri]
          Length = 999

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 258/490 (52%), Positives = 319/490 (65%), Gaps = 110/490 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+ +RMDTL +VL+YP KPLVTTR+                             
Sbjct: 581 MGMYVTNYQIRMDTLGYVLFYPQKPLVTTRA----------------------------- 611

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           MEYL FRELPAG N++VAI+CYTGYNQEDSV++N SA++RG FR
Sbjct: 612 ----------------MEYLHFRELPAGCNAVVAIMCYTGYNQEDSVLMNQSAIDRGLFR 655

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RS+KD E K+     E+FE+P+R TC GMR+  YDKLDDDG+I        D  V+
Sbjct: 656 SLYYRSFKDEEKKQGSLSREEFERPDRDTCLGMRHGTYDKLDDDGLIY-------DSAVL 708

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
                           +KRFSK+D ST ++++ETGI+DQV+LT N  G +F K+RVRS+R
Sbjct: 709 ----------------SKRFSKKDCSTGMKHAETGIIDQVLLTTNDQGLRFVKLRVRSMR 752

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            PQ+GDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 753 TPQVGDKFSSRHGQKGTVGMTYTQEDMPFTCEGITPDIIVNPHAIPSRMTIGQLVECIMG 812

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G+ GDATPF   V  + IST+L + GYQ RGNEVM+NGHTGR ++AQ+F+GPTY
Sbjct: 813 KVAACMGKEGDATPFT-PVTAEDISTMLHKCGYQKRGNEVMYNGHTGRMLDAQIFIGPTY 871

Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
           YQRLKHMVDDKIHSR RGPVQIL RQPMEGR+RDGGLRFGEMERDC +SHGAA FL+ERL
Sbjct: 872 YQRLKHMVDDKIHSRGRGPVQILTRQPMEGRSRDGGLRFGEMERDCIMSHGAASFLKERL 931

Query: 385 FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKN---KTQISQVRLPYAAKLLFQELMS 441
            + SD YRIHVC  CGLIA+AN++N TFEC  CKN   +T + QV +PYA KLLFQELMS
Sbjct: 932 MDQSDAYRIHVCQKCGLIAVANLKNQTFEC--CKNPSERTSVVQVMVPYACKLLFQELMS 989

Query: 442 MNIAPRLMVV 451
           M IAPRL+  
Sbjct: 990 MAIAPRLITA 999


>gi|134110814|ref|XP_775871.1| hypothetical protein CNBD2790 [Cryptococcus neoformans var.
            neoformans B-3501A]
 gi|50258537|gb|EAL21224.1| hypothetical protein CNBD2790 [Cryptococcus neoformans var.
            neoformans B-3501A]
          Length = 1245

 Score =  504 bits (1297), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 256/487 (52%), Positives = 322/487 (66%), Gaps = 85/487 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV +TN+ +RMDT+ +VLYYP KPL TTR                              
Sbjct: 800  MGVCLTNYQLRMDTMVNVLYYPQKPLATTR------------------------------ 829

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYL+F ELPAG N+IVAI+CY+GYNQEDSVI+N S+++RG FR
Sbjct: 830  ---------------SMEYLKFSELPAGQNAIVAIMCYSGYNQEDSVIMNQSSIDRGLFR 874

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAI---YDKLDDDGIIAPGLRVSGDD 177
            S++FRSY D E  +   + E  EKP+R     M++     Y KLD DG++APG  V+GDD
Sbjct: 875  SLYFRSYTDTEKMKGMVKAETIEKPDRNETLRMKHGTGDRYAKLDVDGLVAPGTNVNGDD 934

Query: 178  VVIGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVR 237
            ++IGKT  LPE+ +EL   T+  +KRD ST L+++E G+VDQVML+ N +G  F KIRVR
Sbjct: 935  ILIGKTAPLPEDSEELGQRTQLHTKRDISTPLKSTEQGVVDQVMLSTNGEGNMFVKIRVR 994

Query: 238  SVRIPQIGDKFASRHGQKGTCGIQYRQE-------------------------------- 265
            S R+PQIGDKFASRHGQKGT GI YRQE                                
Sbjct: 995  STRVPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGLVPDIIINPHAIPSRMTIGHLVEC 1054

Query: 266  ----VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLG 321
                VS+  G  GDATPF + + V+ +S +L+  GYQ RG EV+++GHTGRK+ AQV+ G
Sbjct: 1055 LLSKVSTLTGAEGDATPFTE-LTVEAVSKVLRAKGYQSRGFEVLYHGHTGRKLQAQVYFG 1113

Query: 322  PTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLR 381
            PTYYQRLKHMVDDKIH+RARGP+QIL RQP+EGR+RDGGLRFGEMERDC ISHG A FL+
Sbjct: 1114 PTYYQRLKHMVDDKIHARARGPLQILTRQPVEGRSRDGGLRFGEMERDCMISHGIAGFLK 1173

Query: 382  ERLFEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMS 441
            ER+++ SD +RIHVC+ CGL+A+AN++   F C  C+N TQISQV +PYAAKLLFQEL +
Sbjct: 1174 ERMYDSSDAFRIHVCDVCGLMAVANLKKQEFYCSVCRNSTQISQVYIPYAAKLLFQELQA 1233

Query: 442  MNIAPRL 448
            MNIA R+
Sbjct: 1234 MNIACRM 1240


>gi|405120140|gb|AFR94911.1| DNA-directed RNA polymerase II large subunit [Cryptococcus neoformans
            var. grubii H99]
          Length = 1245

 Score =  503 bits (1294), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 255/487 (52%), Positives = 322/487 (66%), Gaps = 85/487 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV +TN+ +RMDT+ +VLYYP KPL TTR                              
Sbjct: 800  MGVCLTNYQLRMDTMVNVLYYPQKPLATTR------------------------------ 829

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYL+F ELPAG N+IVAI+CY+GYNQEDSVI+N S+++RG FR
Sbjct: 830  ---------------SMEYLKFSELPAGQNAIVAIMCYSGYNQEDSVIMNQSSIDRGLFR 874

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAI---YDKLDDDGIIAPGLRVSGDD 177
            S++FRSY D E  +   + E  EKP+R     M++     Y KLD DG++APG  V+GDD
Sbjct: 875  SLYFRSYTDTEKMKGMVKAETIEKPDRNETLRMKHGTGDRYAKLDVDGLVAPGTNVNGDD 934

Query: 178  VVIGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVR 237
            ++IGKT  LPE+ +EL   T+  +KRD ST L+++E G+VDQVML+ N +G  F KIRVR
Sbjct: 935  ILIGKTAPLPEDSEELGQRTQLHTKRDISTPLKSTEQGVVDQVMLSTNGEGNMFVKIRVR 994

Query: 238  SVRIPQIGDKFASRHGQKGTCGIQYRQE-------------------------------- 265
            S R+PQIGDKFASRHGQKGT GI YRQE                                
Sbjct: 995  STRVPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGLVPDIIINPHAIPSRMTIGHLVEC 1054

Query: 266  ----VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLG 321
                VS+  G  GDATPF + + V+ +S +L+  GYQ RG E++++GHTGRK+ AQV+ G
Sbjct: 1055 LLSKVSTLTGAEGDATPFTE-LTVEAVSKVLRAKGYQSRGFELLYHGHTGRKLQAQVYFG 1113

Query: 322  PTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLR 381
            PTYYQRLKHMVDDKIH+RARGP+QIL RQP+EGR+RDGGLRFGEMERDC ISHG A FL+
Sbjct: 1114 PTYYQRLKHMVDDKIHARARGPLQILTRQPVEGRSRDGGLRFGEMERDCMISHGIAGFLK 1173

Query: 382  ERLFEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMS 441
            ER+++ SD +RIHVC+ CGL+A+AN++   F C  C+N TQISQV +PYAAKLLFQEL +
Sbjct: 1174 ERMYDSSDAFRIHVCDVCGLMAVANLKKQEFYCSVCRNSTQISQVYIPYAAKLLFQELQA 1233

Query: 442  MNIAPRL 448
            MNIA R+
Sbjct: 1234 MNIACRM 1240


>gi|294874302|ref|XP_002766888.1| RNA polymerase beta subunit, putative [Perkinsus marinus ATCC 50983]
 gi|239868263|gb|EEQ99605.1| RNA polymerase beta subunit, putative [Perkinsus marinus ATCC 50983]
          Length = 1171

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 254/487 (52%), Positives = 323/487 (66%), Gaps = 86/487 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVY TNF++R+DT+AHVL YP KPLV TR+                             
Sbjct: 731  MGVYATNFNMRIDTMAHVLNYPQKPLVGTRA----------------------------- 761

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                            MEYLRFRELPAG N+IVAI+ Y+GYNQEDS+I+NAS+++RG+ R
Sbjct: 762  ----------------MEYLRFRELPAGNNAIVAIMTYSGYNQEDSLIMNASSIDRGFMR 805

Query: 121  SVFFRSYKDAESKRIGDQE-EQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
            SV F+SY  A+ KR G Q  E+F  P+      M+   Y KLD+DG+I PG RV GDD++
Sbjct: 806  SVHFKSYM-ADEKRQGAQVVEEFRAPSWSKTYAMKRGDYSKLDNDGLINPGTRVHGDDIL 864

Query: 180  IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
            IGK   +P   DE EG  +++++RD S  L+ ++ G+VDQVML++N  G+KF KIRVR++
Sbjct: 865  IGKVSPIPNQTDE-EGRIQKYTERDCSVALKGADNGVVDQVMLSVNARGHKFTKIRVRTL 923

Query: 240  RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
            R+P IGDKFASRHGQKGT GI YRQE                                  
Sbjct: 924  RVPTIGDKFASRHGQKGTMGISYRQEDMPFTQFGVVPDIIMNPHAVPSRMTIGHLVECLL 983

Query: 266  --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
              V    GE GDATPF+  V V +I   L E G+Q +G EVM+NGHTG ++ A++F+GPT
Sbjct: 984  GKVGLLSGEEGDATPFSQ-VTVHEIMARLHELGFQRQGREVMYNGHTGLRLPAKIFIGPT 1042

Query: 324  YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRER 383
            YYQRLKHMV+DKIHSRARGP+Q+L RQPMEGR R+GGLRFGEMERDC ISHGAA+FL+ER
Sbjct: 1043 YYQRLKHMVEDKIHSRARGPMQMLTRQPMEGRGREGGLRFGEMERDCMISHGAAKFLKER 1102

Query: 384  LFEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMN 443
            LF++SD YR+HVC+ CG+ AIAN+  N +EC+ CKN T ISQV +PYA KLLFQELM+M+
Sbjct: 1103 LFDISDAYRVHVCDNCGMFAIANLYKNHYECRACKNST-ISQVHIPYACKLLFQELMTMS 1161

Query: 444  IAPRLMV 450
            I P+L++
Sbjct: 1162 IMPKLVL 1168


>gi|6606105|gb|AAF19065.1|AF107793_1 DNA-dependent RNA polymerase II RPB140, partial [Emericella nidulans]
          Length = 1009

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 256/473 (54%), Positives = 316/473 (66%), Gaps = 85/473 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV++TNF  RM+T+A++LYYP KPL TTR                              
Sbjct: 584  MGVFLTNFDQRMETMANILYYPQKPLATTR------------------------------ 613

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SME+LRFRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 614  ---------------SMEFLRFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 658

Query: 121  SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
            S+F+R+Y D+E K +G    E+FEKP R    GMR   YDKLD+DGI+ PG+RVSG+D++
Sbjct: 659  SLFYRTYSDSE-KMVGLTVVERFEKPMRSDTIGMRKGTYDKLDEDGIVNPGVRVSGEDII 717

Query: 180  IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
            IGKT  L  + +EL   TK  +K D ST LR++E GIVDQV++T   D  +  K+R+R  
Sbjct: 718  IGKTAPLAPDAEELGQRTKNHTKLDVSTPLRSTENGIVDQVLVTTTPDSLRSVKVRMRMT 777

Query: 240  RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
            ++PQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 778  KVPQIGDKFASRHGQKGTIGITYRQEDMPFTREGVTPDLIINPHAIPSRMTIAHLIECQL 837

Query: 266  --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
              VS+ +G  GDATPF D V V  IS LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 838  SKVSALRGFEGDATPFTD-VTVDSISRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 896

Query: 324  YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRER 383
            YYQRL+HMVDDKIH+RARGP QIL RQP+EGRARDGGLRFGEMERDC I+HGA+ FL+ER
Sbjct: 897  YYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKER 956

Query: 384  LFEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLL 435
            LF+VSDP+R+H+C+ CGL+  IA ++   FEC+ C NK +ISQV +PYAAKLL
Sbjct: 957  LFDVSDPFRVHICDDCGLMTPIAKLKKGLFECRLCNNKHRISQVHIPYAAKLL 1009


>gi|409193805|gb|AFV31136.1| RPB2 [Amoeboaphelidium protococcarum]
          Length = 1174

 Score =  495 bits (1275), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 251/487 (51%), Positives = 320/487 (65%), Gaps = 84/487 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            +GVY+TNF  RMDTL+ VL+YP KPLVTTR+                             
Sbjct: 732  IGVYLTNFQQRMDTLSSVLFYPQKPLVTTRA----------------------------- 762

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                            ME+L +RELPAG N+IVAI C+ GYNQEDS++++ SA++RG FR
Sbjct: 763  ----------------MEHLHYRELPAGQNAIVAIACHGGYNQEDSILMSQSAIDRGLFR 806

Query: 121  SVFFRSYKDAESKRIGDQE-EQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
            S FFR+Y + + K++G  E E+ EKPN +     R   Y+KLD DG++ PG RVSGDD++
Sbjct: 807  SFFFRTYTE-QVKKVGALELEEIEKPNPRDTLIRRGNNYEKLDADGLVPPGTRVSGDDIL 865

Query: 180  IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
            +GKT+ +P + +EL   T R  KRD S  +R++E G+VDQV+LT N    K CK RVRSV
Sbjct: 866  VGKTVPIPVDSEELGQRTARHVKRDSSATMRSTEYGVVDQVLLTTNDLDLKMCKTRVRSV 925

Query: 240  RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
            +IPQ+GDK  SRHGQKG  G+ YRQE                                  
Sbjct: 926  KIPQVGDKHCSRHGQKGVLGMLYRQEDLPYTADGIVPDVIINPHAIPSRMTIGHLIECLL 985

Query: 266  --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
              VS+  G+ GD TPF D V V+ IS  L + GYQ RG EV++NG TG+K+ A +F+GPT
Sbjct: 986  SKVSALTGDEGDGTPFTD-VTVEDISNALAKCGYQKRGFEVLYNGQTGQKLAANIFIGPT 1044

Query: 324  YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRER 383
            +YQRLKHMVDDKIH+RARGPVQIL RQP+EGR+RDGGLRFGEME D  ++HGAA FL+ER
Sbjct: 1045 FYQRLKHMVDDKIHARARGPVQILTRQPVEGRSRDGGLRFGEMEHDVIVAHGAAMFLKER 1104

Query: 384  LFEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMN 443
            LF+VSD +R+HVC+ CGL+ IAN+  N++EC+ C NKTQISQ+ LPYA KLLFQELMSMN
Sbjct: 1105 LFDVSDAFRVHVCDLCGLMCIANLSKNSYECRICHNKTQISQIHLPYATKLLFQELMSMN 1164

Query: 444  IAPRLMV 450
            IAPR++V
Sbjct: 1165 IAPRIVV 1171


>gi|323449816|gb|EGB05701.1| hypothetical protein AURANDRAFT_38329 [Aureococcus anophagefferens]
          Length = 1233

 Score =  493 bits (1270), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 252/494 (51%), Positives = 319/494 (64%), Gaps = 92/494 (18%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG+Y +NF  RMDTL+HVL+YP KPL TTR+                             
Sbjct: 788  MGIYASNFQQRMDTLSHVLHYPQKPLATTRA----------------------------- 818

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                            ME+L FRELP+G+N+IVAI+CYTGYNQEDS+I+N +A++RG FR
Sbjct: 819  ----------------MEHLHFRELPSGVNAIVAIMCYTGYNQEDSLIMNQAAIDRGLFR 862

Query: 121  SVFFRSYKDAE-SKRIGDQ----EEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSG 175
            S F+R+Y D E +K I D     +E FE+PNR  C  MR+  Y+K+D DG+++PG+RVSG
Sbjct: 863  STFYRTYSDKEHNKGIWDSPEYLQETFERPNRDECTAMRHGSYEKIDSDGLVSPGVRVSG 922

Query: 176  DDVVIGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIR 235
             D+++GKT   P     L+      SKRD ST +R +E+G+VDQVML+ N DG KF K+R
Sbjct: 923  SDILVGKTS--PSWHSGLKAERSGPSKRDSSTTMRPNESGLVDQVMLSTNQDGMKFTKVR 980

Query: 236  VRSVRIPQIGDKFASRHGQKGTCGIQYRQE------------------------------ 265
             R++RIPQIGDKFASRHGQKGT G+ Y QE                              
Sbjct: 981  TRTIRIPQIGDKFASRHGQKGTIGMTYAQEDMPWTRDGVSPDIIVNPHAIPSRMTIGHLV 1040

Query: 266  ------VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVF 319
                  V +  G+ GDATPF D V+V +I+ +L E GY   GNEVM++GHTGR I+A+VF
Sbjct: 1041 ECLQSKVGALTGKEGDATPFTD-VSVDQIAGVLHELGYHRHGNEVMYSGHTGRIIHAKVF 1099

Query: 320  LGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQF 379
            LGPT+YQRLKH+VDDKIH+R+RGPV +L RQPMEGRARDGGLR GEMERDC ISHG + F
Sbjct: 1100 LGPTFYQRLKHLVDDKIHARSRGPVTMLTRQPMEGRARDGGLRMGEMERDCLISHGVSSF 1159

Query: 380  LRERLFEVSDPYRIHVCNFCGLIAIANMRNNTFEC--KGCKN-KTQISQVRLPYAAKLLF 436
            LR+R+F  SDPY IHVC  CGLIA A++R   F C  K C++  + I +V +PYA KLLF
Sbjct: 1160 LRDRMFANSDPYSIHVCTLCGLIAHADLRKRAFWCNNKDCQHANSSIVRVHIPYACKLLF 1219

Query: 437  QELMSMNIAPRLMV 450
            QELM+M IAPR+ V
Sbjct: 1220 QELMAMCIAPRIQV 1233


>gi|40644726|emb|CAD92665.1| RNA polymerase II [Mimulus guttatus]
          Length = 629

 Score =  493 bits (1268), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 252/454 (55%), Positives = 305/454 (67%), Gaps = 87/454 (19%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+  RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 225 MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA----------------------------- 255

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 256 ----------------MEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFR 299

Query: 121 SVFFRSYKDAESKRIGDQ-EEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+FFRSY+ AE K++G   +E F +P+R    GMR+  YDKLDDDG+  PG RVSG+DV+
Sbjct: 300 SLFFRSYR-AEXKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVI 358

Query: 180 IGKTITLPENEDELEG-TTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRS 238
           IGKT   P   DE +G    R++KRD ST LR+SETG+VDQV+LT N DG +F K+RVRS
Sbjct: 359 IGKTT--PITPDEAQGQANARYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRS 416

Query: 239 VRIPQIGDKFASRHGQKGTCGIQYRQE--------------------------------- 265
           VRIPQIGDKF+SRHGQKGT G+ Y QE                                 
Sbjct: 417 VRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTLEGINPDIIVNPHAIPSRMTIGQLIECV 476

Query: 266 ---VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGP 322
              V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGRK+ + +FLGP
Sbjct: 477 MGKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGYETMYNGHTGRKLTSMIFLGP 535

Query: 323 TYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRE 382
           TYYQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGGLRFGEMERDC I+HGAA FL+E
Sbjct: 536 TYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKE 595

Query: 383 RLFEVSDPYRIHVCNFCGLIAIANMRNNTFECKG 416
           RLF+ SD YRIHVC  CGLIAIAN++ N+FEC+ 
Sbjct: 596 RLFDQSDAYRIHVCEKCGLIAIANLKKNSFECRA 629


>gi|426201159|gb|EKV51082.1| hypothetical protein AGABI2DRAFT_113824 [Agaricus bisporus var.
            bisporus H97]
          Length = 1183

 Score =  491 bits (1265), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 245/450 (54%), Positives = 302/450 (67%), Gaps = 82/450 (18%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG+Y+TNF +RMDT+A++LYYP KPL TTR                              
Sbjct: 779  MGIYLTNFLIRMDTMANILYYPQKPLATTR------------------------------ 808

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 809  ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 853

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+++RSY D E K    Q E+FEKP R T   M++  YDKL+DDG+IAPG  V G+D++I
Sbjct: 854  SIYYRSYMDLEKKSGIQQLEEFEKPTRDTTLRMKHGTYDKLEDDGLIAPGTGVRGEDIII 913

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  +P + +EL   T+  ++RD ST L+++E GIVDQV++T N +G KF K+RVR+ R
Sbjct: 914  GKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTEIGIVDQVLITTNSEGQKFVKVRVRATR 973

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 974  IPQIGDKFASRHGQKGTVGITYRQEDMPFTAEGIVPDLIINPHAIPSRMTIGHLVECLLS 1033

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             V++  G  GDATPF D + V+ +ST L++ GYQ RG EVM++GHTGRK+ AQ++LGPTY
Sbjct: 1034 KVATLIGNEGDATPFTD-LTVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQAQIYLGPTY 1092

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQIL RQP+EGR+RDGGLRFGEMERDC ISHG A FL+ERL
Sbjct: 1093 YQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGIAGFLKERL 1152

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFEC 414
            FE SD YR+HVC+ CGL AIAN++  TFE 
Sbjct: 1153 FEASDAYRLHVCDICGLTAIANLKKQTFEA 1182


>gi|403336158|gb|EJY67267.1| DNA-directed RNA polymerase [Oxytricha trifallax]
          Length = 1239

 Score =  491 bits (1265), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 257/498 (51%), Positives = 313/498 (62%), Gaps = 98/498 (19%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG+Y +N  +RMDTLAHVLYYP KPLV T+S                             
Sbjct: 788  MGIYTSNHSIRMDTLAHVLYYPQKPLVCTKS----------------------------- 818

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                            M++L F+ELPAG N+IVAI CYTGYNQEDS+I N S+++RG FR
Sbjct: 819  ----------------MDFLHFKELPAGSNAIVAIACYTGYNQEDSIIFNQSSIDRGIFR 862

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S FFR+Y + + K     +E+FE P+ + C G ++  YDKLD DG+I PG +VSGDDV+I
Sbjct: 863  SAFFRTYSETQEK-----DERFEIPDFKKCSGRKHGTYDKLDIDGLINPGNQVSGDDVII 917

Query: 181  GKTITLPENED------ELEGTTKRF---SKRDGSTFLRNSETGIVDQVMLTLNVDGYKF 231
            GKT  +  NE+        +G    F   S+RD ST L++SETG +DQV+LT+N  G +F
Sbjct: 918  GKTTAIKMNENMNGNANSSQGADPMFFVKSRRDVSTCLKHSETGKIDQVVLTVNEQGERF 977

Query: 232  CKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQE-------------------------- 265
             KI++RS RIPQIGDKFASRHGQKGT G+ YRQE                          
Sbjct: 978  VKIKMRSERIPQIGDKFASRHGQKGTVGMTYRQEDMPFTREGIVPDLIINPHAIPSRMTI 1037

Query: 266  ----------VSSNKGEIGDATPFNDA---VNVQKISTLLQEYGYQLRGNEVMFNGHTGR 312
                      V+S  G  GDATPF        V++IS  L E GYQLRGNEVM+NG  G+
Sbjct: 1038 GHLIECLGSKVASLTGTEGDATPFQKVGVKDTVEQISKRLHECGYQLRGNEVMYNGFNGK 1097

Query: 313  KINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQI 372
            K+   +FLGPTYYQRLKHMV DKIHSR RGP QIL RQP EGR+RDGGLRFGEMERDC I
Sbjct: 1098 KMEVMIFLGPTYYQRLKHMVADKIHSRGRGPTQILTRQPTEGRSRDGGLRFGEMERDCMI 1157

Query: 373  SHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAA 432
            SHGAA+FL+ERLF+VSD YRIH+C  CGLI + N+    FEC  C+N ++I QV +PYA 
Sbjct: 1158 SHGAARFLKERLFDVSDFYRIHMCEVCGLICVGNLSEQRFECYNCQNTSKICQVNIPYAC 1217

Query: 433  KLLFQELMSMNIAPRLMV 450
            KLL QELM+M IAPRL V
Sbjct: 1218 KLLMQELMAMQIAPRLKV 1235


>gi|303390954|ref|XP_003073707.1| DNA-directed RNA polymerase subunit beta [Encephalitozoon
            intestinalis ATCC 50506]
 gi|303302855|gb|ADM12347.1| DNA-directed RNA polymerase subunit beta [Encephalitozoon
            intestinalis ATCC 50506]
          Length = 1140

 Score =  490 bits (1262), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 255/484 (52%), Positives = 315/484 (65%), Gaps = 86/484 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG+Y TNF +RMDTL+++L+YP KPLVTT+S                             
Sbjct: 703  MGIYATNFLLRMDTLSNILFYPQKPLVTTKS----------------------------- 733

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                            MEYLRF+ELP+G N++VAI CY+GYNQEDS+I+N SA++RG FR
Sbjct: 734  ----------------MEYLRFKELPSGQNALVAIACYSGYNQEDSIIMNQSAIDRGLFR 777

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S F+R+Y D ES       E+F KP+R T   M+N  Y+KLD+DG+I+PG RV+GDDV+I
Sbjct: 778  SFFYRTYTDQESMSRPGVNEEFCKPSRGTVLRMKNLNYNKLDEDGLISPGTRVTGDDVLI 837

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GK   + + E   +     +  +D ST +R +ETGIVD V++T N DGYKF KI+VRS R
Sbjct: 838  GKITPILDPERSTK-EAPVYVYKDSSTAMRRTETGIVDTVIVT-NKDGYKFSKIKVRSGR 895

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQ+GDKFASRH QKGT GI  RQE                                   
Sbjct: 896  IPQMGDKFASRHAQKGTIGITLRQEDMPFTSDGIVPDIIINPHAIPSRMTIGHLIECLLG 955

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+  GE GDATPF+D + V +IS  L+ YG+Q RG EVM+NG TGRK+ AQVF GPTY
Sbjct: 956  KVSAMSGEEGDATPFSD-MTVNEISAKLKSYGFQQRGLEVMYNGMTGRKLRAQVFFGPTY 1014

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIH+RARGP+QIL RQP+EGR+RDGGLRFGEMERDC ISHGA+ FL+ERL
Sbjct: 1015 YQRLKHMVDDKIHARARGPLQILTRQPVEGRSRDGGLRFGEMERDCIISHGASAFLKERL 1074

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
             +VSD Y   VCNFCGL+A+   + N  ECKGC N T +S + +PYA KLL QELM MNI
Sbjct: 1075 MDVSDAYSCFVCNFCGLLAMGGSKVN--ECKGCNNTTNVSMIEIPYAFKLLVQELMGMNI 1132

Query: 445  APRL 448
            APR+
Sbjct: 1133 APRI 1136


>gi|396082220|gb|AFN83830.1| DNA-directed RNA polymerase subunit beta [Encephalitozoon romaleae
            SJ-2008]
          Length = 1141

 Score =  489 bits (1258), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 252/484 (52%), Positives = 317/484 (65%), Gaps = 86/484 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG+Y TNF +RMDTL+++L+YP KPLVTT+S                             
Sbjct: 704  MGIYATNFLLRMDTLSNILFYPQKPLVTTKS----------------------------- 734

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                            MEYLRF+ELP+G N++VAI CY+GYNQEDS+I+N SA++RG FR
Sbjct: 735  ----------------MEYLRFKELPSGQNALVAIACYSGYNQEDSIIMNQSAIDRGLFR 778

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S F+R+Y D ES       E+F KPNR +   M+N  Y+KLD+DG+I+PG+RV+GDDV+I
Sbjct: 779  SFFYRTYTDQESMSRPGVNEEFCKPNRGSVLRMKNLNYNKLDEDGLISPGVRVTGDDVLI 838

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GK   + + E   +     +  +D ST +R +ETGIVD V++T N DGYKF K+++RS R
Sbjct: 839  GKITPILDPERSTK-EAPVYVYKDSSTAMRRTETGIVDTVIVT-NKDGYKFSKVKIRSGR 896

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQ+GDKFASRH QKGT GI  RQE                                   
Sbjct: 897  IPQMGDKFASRHAQKGTIGITLRQEDMPFTSDGIVPDIIINPHAIPSRMTIGHLIECLLG 956

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+  GE GDATPF+  ++V +IST L+ YG+Q RG EVM+NG TGRK+ AQ+F GPTY
Sbjct: 957  KVSAMSGEEGDATPFS-GMSVNEISTRLKSYGFQQRGLEVMYNGMTGRKLRAQIFFGPTY 1015

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIH+RARGP+QIL RQP+EGR+RDGGLRFGEMERDC ISHGA+ FL+ERL
Sbjct: 1016 YQRLKHMVDDKIHARARGPLQILTRQPVEGRSRDGGLRFGEMERDCIISHGASAFLKERL 1075

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
             +VSD Y  +VCN CGL+A+   + N  ECKGC N T +S V +PYA KLL QELM MNI
Sbjct: 1076 MDVSDAYSCYVCNLCGLLAMGGTKVN--ECKGCNNTTNVSMVEIPYAFKLLIQELMGMNI 1133

Query: 445  APRL 448
            APR+
Sbjct: 1134 APRI 1137


>gi|401827615|ref|XP_003888100.1| DNA-directed RNA polymerase subunit B [Encephalitozoon hellem ATCC
            50504]
 gi|392999300|gb|AFM99119.1| DNA-directed RNA polymerase subunit B [Encephalitozoon hellem ATCC
            50504]
          Length = 1141

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 255/484 (52%), Positives = 315/484 (65%), Gaps = 86/484 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG+Y TNF +RMDTL+++L+YP KPLVTT+S                             
Sbjct: 704  MGIYATNFLLRMDTLSNILFYPQKPLVTTKS----------------------------- 734

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                            MEYLRF+ELP+G N++VAI CY+GYNQEDSVI+N SA++RG FR
Sbjct: 735  ----------------MEYLRFKELPSGQNALVAIACYSGYNQEDSVIMNQSAIDRGLFR 778

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S F+R+Y D ES       E+F KPNR +   M+N  Y+KLDDDG+I PG RV+GDDV+I
Sbjct: 779  SFFYRTYTDQESMSRPGVNEEFCKPNRGSVLRMKNLNYNKLDDDGLINPGTRVTGDDVLI 838

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GK   + + E   +  T  +  +D ST +R +ETGIVD V++T N DGYKF K++VRS R
Sbjct: 839  GKITPILDPERSTK-ETPVYVYKDSSTAMRRTETGIVDTVIVT-NKDGYKFSKVKVRSGR 896

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQ+GDKFASRH QKGT GI  RQE                                   
Sbjct: 897  IPQMGDKFASRHAQKGTIGITLRQEDMPFTSDGIVPDIIINPHAIPSRMTIGHLIECLLG 956

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+  GE GDATPF+  ++V +IS  L+ YG+Q RG EVM+NG TGRK+ AQ+F GPTY
Sbjct: 957  KVSAMSGEEGDATPFS-GMSVNEISARLKSYGFQQRGLEVMYNGMTGRKLRAQIFFGPTY 1015

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIH+RARGP+QIL RQP+EGR+RDGGLRFGEMERDC ISHGA+ FL+ERL
Sbjct: 1016 YQRLKHMVDDKIHARARGPLQILTRQPVEGRSRDGGLRFGEMERDCIISHGASAFLKERL 1075

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
             +VSD Y  +VCN CGL+A+   + N  ECKGC N T +S V +PYA KLL QELM MNI
Sbjct: 1076 MDVSDAYSCYVCNICGLLAMGGSKVN--ECKGCSNTTNVSIVEIPYAFKLLIQELMGMNI 1133

Query: 445  APRL 448
            APR+
Sbjct: 1134 APRI 1137


>gi|403331439|gb|EJY64666.1| DNA-directed RNA polymerase [Oxytricha trifallax]
          Length = 1198

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 251/487 (51%), Positives = 309/487 (63%), Gaps = 92/487 (18%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVY +N+ +RMDTLAHVLYYP KPLV T+S                             
Sbjct: 759  MGVYTSNYQMRMDTLAHVLYYPQKPLVCTKS----------------------------- 789

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                            ME+L F+EL +G+N+ +AI CYTGYNQEDS++LN SA++RG+FR
Sbjct: 790  ----------------MEFLHFKELSSGLNASIAIACYTGYNQEDSIMLNQSAIDRGFFR 833

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVFFR+Y D        + E F  P+     G ++  YDKLD DG+I PG+ VSGDD+++
Sbjct: 834  SVFFRTYDDCSK-----EGEVFAIPDFAKTSGRKHGDYDKLDIDGLICPGVLVSGDDIIV 888

Query: 181  GKTITLPEN---EDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVR 237
            GK   +  N   ED  + T K+F  +D ST L++SE+GI+DQV+LT N +  KF K+++R
Sbjct: 889  GKVAKMTSNTFNEDLRDSTAKKF--KDCSTPLKHSESGIIDQVILTTNDEAQKFTKVKMR 946

Query: 238  SVRIPQIGDKFASRHGQKGTCGIQYRQE-------------------------------- 265
            +VRIPQIGDKFASRHGQKGTCG+ YRQE                                
Sbjct: 947  AVRIPQIGDKFASRHGQKGTCGMTYRQEDLPFTREGVVPDMIVNPHAIPSRMTIGHLIEC 1006

Query: 266  ----VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLG 321
                V+S  G  GDATPF    NV +IS LL E GYQ  GNEVM+NG TGRK    +FLG
Sbjct: 1007 LLSKVASLNGSEGDATPFC-GQNVDEISQLLHELGYQRYGNEVMYNGFTGRKFEVLIFLG 1065

Query: 322  PTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLR 381
            PT+YQRLKHMV DKIHSR RGP QIL RQP EGR+RDGGLRFGEMERDC ISHGAA+FL+
Sbjct: 1066 PTFYQRLKHMVGDKIHSRGRGPTQILTRQPTEGRSRDGGLRFGEMERDCMISHGAARFLK 1125

Query: 382  ERLFEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMS 441
            ERLF+VSD YR+H+C  CGLI  AN+    +EC  C N + I QV++PYAAKLL QELM+
Sbjct: 1126 ERLFDVSDCYRVHICQTCGLICQANLAEQRYECNNCNNTSNICQVKIPYAAKLLIQELMA 1185

Query: 442  MNIAPRL 448
            M +APRL
Sbjct: 1186 MQLAPRL 1192


>gi|19074634|ref|NP_586140.1| DNA-DIRECTED RNA POLYMERASE II SECOND LARGEST SUBUNIT
            [Encephalitozoon cuniculi GB-M1]
 gi|51702025|sp|Q8SR75.1|RPB2_ENCCU RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA
            polymerase II subunit 2; Short=RNA polymerase II subunit
            B2
 gi|19069276|emb|CAD25744.1| DNA-DIRECTED RNA POLYMERASE II SECOND LARGEST SUBUNIT
            [Encephalitozoon cuniculi GB-M1]
          Length = 1141

 Score =  487 bits (1253), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 253/484 (52%), Positives = 314/484 (64%), Gaps = 86/484 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG+Y TNF +RMDTL+++L+YP KPLVTT+S                             
Sbjct: 704  MGIYATNFLLRMDTLSNILFYPQKPLVTTKS----------------------------- 734

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                            MEYLRF+ELP+G N++VAI CY+GYNQEDS+I+N SA++RG FR
Sbjct: 735  ----------------MEYLRFKELPSGQNALVAIACYSGYNQEDSIIMNQSAIDRGLFR 778

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S F+R+Y D ES       E+F KP+R     M+N  Y+KLDDDG+I+PG RV+GDDV+I
Sbjct: 779  SFFYRTYTDQESMSRPGVNEEFCKPSRGAVLRMKNLNYNKLDDDGLISPGTRVTGDDVLI 838

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GK   + + E   +     +  +D ST +R +ETGIVD V++T N DGYKF K++VRS R
Sbjct: 839  GKITPILDPERSTK-EAPVYVYKDSSTAMRRTETGIVDTVIVT-NKDGYKFSKVKVRSGR 896

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQ+GDKFASRH QKGT GI  RQE                                   
Sbjct: 897  IPQMGDKFASRHAQKGTIGITLRQEDMPFTSEGIVPDIIINPHAIPSRMTIGHLIECLLG 956

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+  GE GDATPF+  V V  IS+ L+ YG+Q RG EVM+NG TGRK+ AQ+F GPTY
Sbjct: 957  KVSAMSGEEGDATPFS-GVTVDGISSRLKSYGFQQRGLEVMYNGMTGRKLRAQMFFGPTY 1015

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIH+RARGP+QIL RQP+EGR+RDGGLRFGEMERDC ISHGA+ FL+ERL
Sbjct: 1016 YQRLKHMVDDKIHARARGPLQILTRQPVEGRSRDGGLRFGEMERDCIISHGASAFLKERL 1075

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
             +VSD Y  +VC+FCGL+A+   + N  ECKGC N T +S V +PYA KLL QELM MNI
Sbjct: 1076 MDVSDAYSCYVCDFCGLLAMGGSKVN--ECKGCNNTTNVSMVEIPYAFKLLIQELMGMNI 1133

Query: 445  APRL 448
            APR+
Sbjct: 1134 APRI 1137


>gi|449330210|gb|AGE96471.1| DNA-directed RNA polymerase II second largest subunit
            [Encephalitozoon cuniculi]
          Length = 1141

 Score =  487 bits (1253), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 253/484 (52%), Positives = 314/484 (64%), Gaps = 86/484 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG+Y TNF +RMDTL+++L+YP KPLVTT+S                             
Sbjct: 704  MGIYATNFLLRMDTLSNILFYPQKPLVTTKS----------------------------- 734

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                            MEYLRF+ELP+G N++VAI CY+GYNQEDS+I+N SA++RG FR
Sbjct: 735  ----------------MEYLRFKELPSGQNALVAIACYSGYNQEDSIIMNQSAIDRGLFR 778

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S F+R+Y D ES       E+F KP+R     M+N  Y+KLDDDG+I+PG RV+GDDV+I
Sbjct: 779  SFFYRTYTDQESMSRPGVNEEFCKPSRGAVLRMKNLNYNKLDDDGLISPGTRVTGDDVLI 838

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GK   + + E   +     +  +D ST +R +ETGIVD V++T N DGYKF K++VRS R
Sbjct: 839  GKITPILDPERSTK-EAPVYVYKDSSTAMRRTETGIVDTVIVT-NKDGYKFSKVKVRSGR 896

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQ+GDKFASRH QKGT GI  RQE                                   
Sbjct: 897  IPQMGDKFASRHAQKGTIGITLRQEDMPFTSEGIVPDIIINPHAIPSRMTIGHLIECLLG 956

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VS+  GE GDATPF+  V V  IS+ L+ YG+Q RG EVM+NG TGRK+ AQ+F GPTY
Sbjct: 957  KVSAMSGEEGDATPFS-GVTVDGISSRLKSYGFQQRGLEVMYNGMTGRKLRAQMFFGPTY 1015

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIH+RARGP+QIL RQP+EGR+RDGGLRFGEMERDC ISHGA+ FL+ERL
Sbjct: 1016 YQRLKHMVDDKIHARARGPLQILTRQPVEGRSRDGGLRFGEMERDCIISHGASAFLKERL 1075

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
             +VSD Y  +VC+FCGL+A+   + N  ECKGC N T +S V +PYA KLL QELM MNI
Sbjct: 1076 MDVSDAYSCYVCDFCGLLAMGGSKVN--ECKGCNNTTNVSMVEIPYAFKLLIQELMGMNI 1133

Query: 445  APRL 448
            APR+
Sbjct: 1134 APRI 1137


>gi|399216338|emb|CCF73026.1| unnamed protein product [Babesia microti strain RI]
          Length = 1202

 Score =  486 bits (1251), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 250/487 (51%), Positives = 316/487 (64%), Gaps = 91/487 (18%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVY +NF++RMDTL+H+LYYP KPLV TR+                             
Sbjct: 767  MGVYSSNFNLRMDTLSHLLYYPQKPLVCTRA----------------------------- 797

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                            ME+LRFRELPAGIN+IVAI+CY+GYNQEDS+I+N S+++RG FR
Sbjct: 798  ----------------MEFLRFRELPAGINAIVAIMCYSGYNQEDSLIMNQSSIDRGLFR 841

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF R+Y   E ++     E+FE+PN Q   GM+   Y KLD DG++ PG RV GDDV+I
Sbjct: 842  SVFNRTYVSEEKQQGSVTIEKFERPNPQFVAGMKRGDYSKLDSDGLVEPGSRVLGDDVII 901

Query: 181  GK-TITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
            G+ + TLP N+D          KRD S  LR SE G+V  V+L++N  G +FCK++VRSV
Sbjct: 902  GRISPTLP-NQDVA-------PKRDCSLCLRRSENGVVHSVLLSVNSKGSRFCKVKVRSV 953

Query: 240  RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
            RIPQIGDKFASRHGQKGT GI YR E                                  
Sbjct: 954  RIPQIGDKFASRHGQKGTIGITYRMEDMPFTCQGIVPDIIMNPHAVPSRMTIGHLVECLV 1013

Query: 266  --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
              V +  G  GDATPF+ ++ V++I++ L E GY+  GNE ++NG+TGR + +++F+GPT
Sbjct: 1014 GKVGAIGGLEGDATPFS-SLTVKEIASKLHELGYERHGNEALYNGYTGRLLKSKIFIGPT 1072

Query: 324  YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRER 383
            YYQRLKHMV+DKIH+RARGPV +L RQP EGR+RDGGLRFGEMERDC ISHGAA+ L+ER
Sbjct: 1073 YYQRLKHMVEDKIHARARGPVTMLTRQPTEGRSRDGGLRFGEMERDCMISHGAAKVLKER 1132

Query: 384  LFEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMN 443
            LF+ SD YR+HVC+ CGLI IA++   +FEC  C NKT ISQV +PYA KLL QELMSM 
Sbjct: 1133 LFDQSDAYRVHVCDMCGLIVIADLNRGSFECSACDNKTNISQVSIPYACKLLLQELMSMA 1192

Query: 444  IAPRLMV 450
            I P+L +
Sbjct: 1193 IYPKLTL 1199


>gi|40644994|emb|CAD88980.1| DNA-directed RNA polymerase subunit B [Vicia sativa]
          Length = 401

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 243/444 (54%), Positives = 298/444 (67%), Gaps = 84/444 (18%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+  RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 6   MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA----------------------------- 36

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 37  ----------------MEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFR 80

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY+D E K     +E F +P+R +  GMR+  Y+KLDDDG+  PG RVSG+DV+I
Sbjct: 81  SLFFRSYRDEEKKMGTLVKEDFGRPDRASTMGMRHGSYEKLDDDGLAPPGTRVSGEDVII 140

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT   P +++E +G   R+SKRD S  LR+SE GIVDQV+LT N DG +F K+RVRSVR
Sbjct: 141 GKTT--PLSQEEAQGQAARYSKRDHSISLRHSENGIVDQVLLTTNADGLRFVKVRVRSVR 198

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 199 IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMG 258

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGR+++A +FLGPTY
Sbjct: 259 KVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTY 317

Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
           YQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGGLRFGEMERDC I+HGAA FL+ERL
Sbjct: 318 YQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERL 377

Query: 385 FEVSDPYRIHVCNFCGLIAIANMR 408
           F+ SD YR+HVC  CG+IAIAN++
Sbjct: 378 FDQSDAYRVHVCELCGIIAIANLK 401


>gi|40643994|emb|CAD90166.1| DNA-directed RNA polymerase II largest subunit [Gardenia sp.
           Oxelman 2319]
          Length = 627

 Score =  483 bits (1243), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 242/450 (53%), Positives = 299/450 (66%), Gaps = 84/450 (18%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+YITN+ +RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 226 MGMYITNYQLRMDTLAYVLYYPQKPLVTTRA----------------------------- 256

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN++VAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 257 ----------------MEHLHFRQLPAGINAVVAIACYSGYNQEDSVIMNQSSIDRGFFR 300

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY+D E K     +E+F  PNR+   GMR+  YDKLD DG   PG RVSG+DV+I
Sbjct: 301 SIFFRSYRDEEKKMGTLVKEEFGSPNRENTMGMRHGSYDKLDADGFAPPGTRVSGEDVII 360

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT +LP  +DE +G   R+++RD ST LR+SE+GIVDQV LT N DG +F K+R+RSVR
Sbjct: 361 GKTTSLP--QDEAQGQASRYTRRDHSTSLRHSESGIVDQVALTTNADGLRFVKVRMRSVR 418

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 419 IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGISPDIIVNPHAIPSRMTIGQLIECIMG 478

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V+++ G+ GDATPF D V V  IS  L + GYQ+RG E ++NGHTGR +   +F+GPTY
Sbjct: 479 KVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFERVYNGHTGRIMGDLIFMGPTY 537

Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
           YQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGGLRFGEMERDC I+HGAA FL+ERL
Sbjct: 538 YQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERL 597

Query: 385 FEVSDPYRIHVCNFCGLIAIANMRNNTFEC 414
           F+ SD YR+H+C  CGLIA+A  + ++FEC
Sbjct: 598 FDQSDAYRVHICEHCGLIALACFKKSSFEC 627


>gi|40644720|emb|CAD92662.1| RNA polymerase II [Solanum lycopersicum]
          Length = 396

 Score =  483 bits (1243), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 242/444 (54%), Positives = 299/444 (67%), Gaps = 84/444 (18%)

Query: 8   FHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNAS 67
           +  RMDTLA+VLYYP KPLVTTR+                                    
Sbjct: 1   YQFRMDTLAYVLYYPQKPLVTTRA------------------------------------ 24

Query: 68  AVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFRSY 127
                    ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FRS+FFRSY
Sbjct: 25  ---------MEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSY 75

Query: 128 KDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLP 187
           +D E K     +E F +P+R +  GMR+  YDKLDDDG+  PG RVSG+DV+IGKT   P
Sbjct: 76  RDEEKKMGTLVKEDFGRPDRASTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--P 133

Query: 188 ENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDK 247
            ++D+ +G   R++++D ST LR+SETG+VDQV+LT N DG +F K+RVRSVRIPQIGDK
Sbjct: 134 ISQDDAQGQASRYTRKDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDK 193

Query: 248 FASRHGQKGTCGIQYRQE------------------------------------VSSNKG 271
           F+SRHGQKGT G+ Y QE                                    V+++ G
Sbjct: 194 FSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMG 253

Query: 272 EIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQRLKHM 331
           + GDATPF D V V  IS  L + GYQ+RG E M+NGHTGR+++A +FLGPTYYQRLKHM
Sbjct: 254 KEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHM 312

Query: 332 VDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPY 391
           VDDKIHSR RGPVQIL RQP EGR+RDGGLRFGEMERDC I+HGAA FL+ERLF+ SD Y
Sbjct: 313 VDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAY 372

Query: 392 RIHVCNFCGLIAIANMRNNTFECK 415
           R+HVC  CGLIAIAN++ N+FEC+
Sbjct: 373 RVHVCERCGLIAIANLKKNSFECR 396


>gi|302832249|ref|XP_002947689.1| hypothetical protein VOLCADRAFT_103593 [Volvox carteri f.
            nagariensis]
 gi|300267037|gb|EFJ51222.1| hypothetical protein VOLCADRAFT_103593 [Volvox carteri f.
            nagariensis]
          Length = 1206

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 249/506 (49%), Positives = 307/506 (60%), Gaps = 107/506 (21%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG+Y TN+  RMDT   VLYYP KPLV TR+                             
Sbjct: 740  MGMYATNYQTRMDTQGFVLYYPQKPLVCTRA----------------------------- 770

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                            M+YL+FRELPAGIN+IVAI+CY+GYNQEDS++LN S+++RG+ R
Sbjct: 771  ----------------MDYLKFRELPAGINAIVAIMCYSGYNQEDSLMLNGSSIDRGFHR 814

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+F+R+YK+ E K      E+ E P+      M++  YDKLD DG+  PG RVSG+D++ 
Sbjct: 815  SIFYRAYKEEEKKAGSLSREEIEAPDPVVTAKMKHGTYDKLDADGLCPPGTRVSGEDIIC 874

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT+TLP   D+  G  +RF+K+D S  LR  E G++DQVMLT N +G KF KIRVR++ 
Sbjct: 875  GKTVTLP---DDPTGAVQRFTKKDASLALRGHEAGVIDQVMLTTNDEGQKFVKIRVRTIC 931

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQ+GDKFASRHGQKGTCGI Y  E                                   
Sbjct: 932  IPQVGDKFASRHGQKGTCGITYTMEDMPFSAEGIVPDIIVNPHAIPSRMTIGHLVEALMS 991

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             V++  G  GDATPF   V V  +S +L + GYQ RG EVM+NGHTGR++ AQ+FL PTY
Sbjct: 992  KVAALMGSEGDATPFTK-VTVDNVSQMLHDLGYQRRGWEVMYNGHTGRQLRAQIFLNPTY 1050

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVD KIHSR RGPVQ+L RQP EGRARDGGLRFGEMERDC ISHGAA FL+ERL
Sbjct: 1051 YQRLKHMVDFKIHSRGRGPVQVLTRQPAEGRARDGGLRFGEMERDCIISHGAAAFLKERL 1110

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQ------------------- 425
            F+ SD YR+HVC   GLIA+AN++   F     K+ + I Q                   
Sbjct: 1111 FDQSDAYRVHVCERSGLIAVANLKKQQFTSTIYKDGSNIYQASYRRNPRWAAGGGYKRMW 1170

Query: 426  ---VRLPYAAKLLFQELMSMNIAPRL 448
               V +PYA KLLFQELM+M IAPR+
Sbjct: 1171 NKDVYVPYACKLLFQELMAMCIAPRM 1196


>gi|401407224|ref|XP_003883061.1| DNA-directed RNA polymerase subunit beta [Neospora caninum Liverpool]
 gi|325117477|emb|CBZ53029.1| DNA-directed RNA polymerase subunit beta [Neospora caninum Liverpool]
          Length = 1260

 Score =  475 bits (1223), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 248/495 (50%), Positives = 311/495 (62%), Gaps = 91/495 (18%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVY ++F+ RMDTLAH+LYYP KPLV TR+                             
Sbjct: 809  MGVYTSSFNHRMDTLAHLLYYPQKPLVCTRA----------------------------- 839

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                            ME+LRFRELPAGIN+IVAILCY+GYNQEDS+I++ S+++RG FR
Sbjct: 840  ----------------MEFLRFRELPAGINAIVAILCYSGYNQEDSLIMSQSSIDRGLFR 883

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+R+Y   E ++     E FE P+ +  QGM+   Y KLD DG++ PG RV GDDV+I
Sbjct: 884  SVFYRTYCSEERQQGSLMVESFEPPSIEHVQGMKRGDYSKLDADGLVEPGSRVLGDDVII 943

Query: 181  GKTITLPENEDELEGTTKRFS---------KRDGSTFLRNSETGIVDQVMLTLNVDGYKF 231
            GKT  + +++  + G     +         KRD S  LR+SETG+VDQVML++N  G +F
Sbjct: 944  GKTSPIFDDDAGMPGAAAGIAGVPSPFAKRKRDCSLCLRSSETGVVDQVMLSVNSRGSRF 1003

Query: 232  CKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQE-------------------------- 265
             K++VRSVRIPQ GDKFASRHGQKGT GI YR E                          
Sbjct: 1004 TKVKVRSVRIPQTGDKFASRHGQKGTIGITYRTEDMPFNEEGITPDLIMNPHAVPSRMTI 1063

Query: 266  ----------VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKIN 315
                       ++  G  GDATPFN    V  IS  L   GY+  GNE +++GHTGR + 
Sbjct: 1064 GHLVECLLGKTAAIFGGEGDATPFN-GYAVLDISNRLHSLGYERFGNERLYHGHTGRHLP 1122

Query: 316  AQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHG 375
            + VF GPTYYQRLKHMVDDKIH+RARGPV +L RQPMEG++R+GGLRFGEMERDC ISHG
Sbjct: 1123 SLVFFGPTYYQRLKHMVDDKIHARARGPVTMLTRQPMEGKSREGGLRFGEMERDCMISHG 1182

Query: 376  AAQFLRERLFEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLL 435
            AA  L+ERLFE SD YR+HVC+ CGL+  A++    FECK C NK++ISQ+ +PYA KLL
Sbjct: 1183 AAHMLKERLFEQSDAYRVHVCDICGLVCTADLSRGNFECKLCDNKSRISQICIPYACKLL 1242

Query: 436  FQELMSMNIAPRLMV 450
             QELM+M I PRL++
Sbjct: 1243 LQELMTMCIYPRLVL 1257


>gi|209879223|ref|XP_002141052.1| RNA polymerase beta subunit [Cryptosporidium muris RN66]
 gi|209556658|gb|EEA06703.1| RNA polymerase beta subunit, putative [Cryptosporidium muris RN66]
          Length = 1184

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 246/487 (50%), Positives = 310/487 (63%), Gaps = 86/487 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVY +N++VRMDTL +VLYYP KPLVTTR+                             
Sbjct: 744  MGVYTSNYNVRMDTLGYVLYYPQKPLVTTRA----------------------------- 774

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                            M Y+RFRELPAGIN IV I+CY+GYNQEDS+I+N S+++RG FR
Sbjct: 775  ----------------MTYMRFRELPAGINCIVGIMCYSGYNQEDSLIMNQSSIDRGLFR 818

Query: 121  SVFFRSYKDAESKRIGDQE-EQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
            SVFFR+Y  +E K+IG    E FE PN     G+R   Y  LD DG+I PG RV GDD++
Sbjct: 819  SVFFRTYV-SEEKQIGSNLIEAFELPNPDEVSGLRFGNYGNLDRDGLIEPGNRVLGDDII 877

Query: 180  IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
            IGK   +P   +E +   +R +KRD S  LR+SE G+VD+V+L+ N  G KF K++VR++
Sbjct: 878  IGKFGPIPP--EERDNRIERLTKRDCSIGLRSSEHGVVDEVLLSTNSKGVKFTKVKVRTI 935

Query: 240  RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
            R+P IGDKFASRHGQKGT GI YR E                                  
Sbjct: 936  RVPHIGDKFASRHGQKGTIGITYRMEDMPFTQDGIVPDIIMNPHAIPSRMTIGHLIECIL 995

Query: 266  --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
                + +G  GDATPF   V V++IS  L   G+Q  GNEVM+NGHTGR++ +++F+GPT
Sbjct: 996  GKTCAIEGMEGDATPFT-KVTVEEISNRLHAAGFQRNGNEVMYNGHTGRQLESRIFIGPT 1054

Query: 324  YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRER 383
            YYQRLKHMVDDKIH+RA+G + +L RQP EGR+R+GGLRFGEMERDC ISHGAA+ L+ER
Sbjct: 1055 YYQRLKHMVDDKIHARAKGAITMLTRQPREGRSREGGLRFGEMERDCMISHGAAKMLKER 1114

Query: 384  LFEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMN 443
            LF+  D YR+HVC  CGLI  A++    +ECK C NK+QISQV LPYA KLL QELM+M+
Sbjct: 1115 LFDQCDAYRVHVCELCGLICTADLGKQHYECKVCSNKSQISQVCLPYACKLLLQELMAMS 1174

Query: 444  IAPRLMV 450
            I PRL +
Sbjct: 1175 IYPRLQL 1181


>gi|66363138|ref|XP_628535.1| RNA polymerase beta subunit [Cryptosporidium parvum Iowa II]
 gi|46229549|gb|EAK90367.1| RNA polymerase beta subunit [Cryptosporidium parvum Iowa II]
          Length = 1177

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 241/484 (49%), Positives = 307/484 (63%), Gaps = 84/484 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVY +N++VRMDTL +VLYYP KPLVTTR+                             
Sbjct: 737  MGVYTSNYNVRMDTLGYVLYYPQKPLVTTRA----------------------------- 767

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                            M Y+RFRELPAGIN IV I+CY+GYNQEDS+I+N S+++RG FR
Sbjct: 768  ----------------MTYMRFRELPAGINCIVGIMCYSGYNQEDSLIMNQSSIDRGLFR 811

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVFFR+Y   E +   +  E FE PN +   G+R   Y  LD DG+I PG RV GDD++I
Sbjct: 812  SVFFRTYVSEEKQVGSNLIEAFELPNPEEVSGLRFGNYGNLDLDGLIEPGNRVLGDDIII 871

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GK    P N ++ +   ++ +KRD S  +R SE G+VD+V+L+ N  G KF K++VR++R
Sbjct: 872  GKV--GPINPEDRDTRIQKLTKRDCSVGIRTSEHGVVDEVLLSTNSKGVKFAKVKVRTIR 929

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IP +GDKFASRHGQKGT GI YR E                                   
Sbjct: 930  IPHVGDKFASRHGQKGTIGITYRTEDMPFTQDGIIPDIIMNPHAIPSRMTIGHLIECLLG 989

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
               + +G  GDATPF   + V++IS+ L   G+Q  GNEVM+NGHTG+++ +++F+GPTY
Sbjct: 990  KACAIQGLEGDATPFT-KITVEEISSRLHSSGFQKNGNEVMYNGHTGKRLESRIFIGPTY 1048

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIH+RARG V +L RQP EGRAR+GGLRFGEMERDC ISHGAA+ L+ERL
Sbjct: 1049 YQRLKHMVDDKIHARARGAVTMLTRQPREGRAREGGLRFGEMERDCMISHGAAKMLKERL 1108

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            F+  D YR+HVC  CGLI IA++    FEC  C NK++ISQ+ LPYA KLL QELM+M+I
Sbjct: 1109 FDQCDAYRVHVCEMCGLICIADLGKQHFECNACNNKSRISQICLPYACKLLLQELMAMSI 1168

Query: 445  APRL 448
             PRL
Sbjct: 1169 YPRL 1172


>gi|300707573|ref|XP_002995989.1| hypothetical protein NCER_100983 [Nosema ceranae BRL01]
 gi|239605241|gb|EEQ82318.1| hypothetical protein NCER_100983 [Nosema ceranae BRL01]
          Length = 1143

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 249/484 (51%), Positives = 304/484 (62%), Gaps = 86/484 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG+Y TNF +RMDTL+++L+YP KPLVTT+S                             
Sbjct: 707  MGIYATNFMLRMDTLSNILFYPQKPLVTTKS----------------------------- 737

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                            MEY+RF+ELP G N+IVAI  YTGYNQEDS+I+N SA++RG FR
Sbjct: 738  ----------------MEYIRFKELPPGQNAIVAIASYTGYNQEDSIIMNQSAIDRGLFR 781

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S F+R+Y D E+       E+F KP R     MRN  Y KLD+DGII  G RV+GDDV+I
Sbjct: 782  SFFYRTYTDQENTTRPGTHEEFCKPLRSEVIRMRNLNYSKLDNDGIIPTGTRVTGDDVLI 841

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GK   + + E   +G    + K+D ST +R +E G VD V++T N +GYKF K++VRS R
Sbjct: 842  GKVSPILDPERSTKGNPV-YLKKDSSTSMRRTEDGFVDSVIVT-NKEGYKFAKVKVRSCR 899

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQ+GDKFASRH QKGT GI   QE                                   
Sbjct: 900  IPQMGDKFASRHAQKGTVGITLNQEDMPFTSEGIVPDIIINPHAIPSRMTIGHLIECLMG 959

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
               +  GE GDATPFN  V V  IS  L+EY YQ RG EVM+NG TG K+ AQ+++GPTY
Sbjct: 960  KTCALTGEEGDATPFN-GVTVDNISEKLKEYNYQQRGFEVMYNGMTGHKLRAQIYIGPTY 1018

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIH+RA+GP+QIL RQP+EGR+RDGGLRFGEMERDC ISHGA+ FL+ERL
Sbjct: 1019 YQRLKHMVDDKIHARAKGPLQILTRQPVEGRSRDGGLRFGEMERDCIISHGASAFLKERL 1078

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
             +VSDPY   +C+ CGLIAI   R N  ECKGC N+T +S V +PYA KLL QELM MNI
Sbjct: 1079 MDVSDPYTCCICDLCGLIAIDTKRYN--ECKGCNNRTNLSLVEIPYAFKLLIQELMGMNI 1136

Query: 445  APRL 448
            APR+
Sbjct: 1137 APRI 1140


>gi|520505|gb|AAC83398.1| RNA polymerase II, second largest subunit, partial [Artemia salina]
          Length = 862

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 244/368 (66%), Positives = 265/368 (72%), Gaps = 84/368 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGVYITNFHVRMDTLAHVL YP KPLVTTR                              
Sbjct: 540 MGVYITNFHVRMDTLAHVLCYPQKPLVTTR------------------------------ 569

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYLRFRELPAGINSIVAILCYTGYNQEDSV++NASAV+RG+FR
Sbjct: 570 ---------------SMEYLRFRELPAGINSIVAILCYTGYNQEDSVLMNASAVDRGFFR 614

Query: 121 SVFFRSYKDAESKRI--GDQEEQFEKPNRQTCQGMRNA-IYDKLDDDGIIAPGLRVSGDD 177
           SVFFRSYKDAE+KR   G  EE FEKP+R TCQGM++   YDKLD+DGIIAPG+RVSGDD
Sbjct: 615 SVFFRSYKDAETKRAMAGASEETFEKPSRDTCQGMKHPQSYDKLDNDGIIAPGIRVSGDD 674

Query: 178 VVIGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVR 237
           VVIGKT+T+PEN+DEL    KR+SKRD STFLRNSETGI DQVMLTLN +G+KFCKIRVR
Sbjct: 675 VVIGKTVTMPENDDELSSAAKRYSKRDCSTFLRNSETGITDQVMLTLNTEGFKFCKIRVR 734

Query: 238 SVRIPQIGDKFASRHGQKGTCGIQYRQE-------------------------------- 265
           SVRIPQIGDKFASRHGQKGTCGIQYRQE                                
Sbjct: 735 SVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFSAEGTAPDIIINPHAIPSRMTIGHLIEC 794

Query: 266 ----VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLG 321
               VS+NKGEIGDATPFNDAVNVQKIS LLQ+YGYQLRGNEVM+NG TGRK+ +QVFLG
Sbjct: 795 IQGKVSANKGEIGDATPFNDAVNVQKISNLLQDYGYQLRGNEVMYNGFTGRKLVSQVFLG 854

Query: 322 PTYYQRLK 329
           PTYYQRLK
Sbjct: 855 PTYYQRLK 862


>gi|170084317|ref|XP_001873382.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164650934|gb|EDR15174.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 942

 Score =  470 bits (1209), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 235/434 (54%), Positives = 292/434 (67%), Gaps = 82/434 (18%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF +RMDT+A++LYYP KPL TTR                              
Sbjct: 555 MGIYLTNFLIRMDTMANILYYPQKPLATTR------------------------------ 584

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 585 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 629

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP R+    M++  YDK++DDG+IAPG  V+G+D++I
Sbjct: 630 SIYYRSYMDLEKKSGVQQLEEFEKPTRENTLRMKHGTYDKIEDDGLIAPGTGVAGEDIII 689

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E+GIVDQV++T N +G KF K+RVRS R
Sbjct: 690 GKTAPIPPDSEELGQRTQTHTRRDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRSTR 749

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 750 IPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLS 809

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D + V+ +ST L++ GYQ RG EVM++GHTGRK+ AQV+LGPTY
Sbjct: 810 KVATLIGNEGDATPFTD-LTVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTY 868

Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
           YQRLKHMVDDKIHSRARGPVQIL RQP+EGR+RDGGLRFGEMERDC ISHG A FL+ERL
Sbjct: 869 YQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGIAGFLKERL 928

Query: 385 FEVSDPYRIHVCNF 398
           FE SD YR+HVC+ 
Sbjct: 929 FEASDAYRLHVCDM 942


>gi|237831495|ref|XP_002365045.1| DNA-directed RNA polymerase II subunit RPB2, putative [Toxoplasma
            gondii ME49]
 gi|211962709|gb|EEA97904.1| DNA-directed RNA polymerase II subunit RPB2, putative [Toxoplasma
            gondii ME49]
 gi|221487105|gb|EEE25351.1| DNA-directed RNA polymerase II subunit, putative [Toxoplasma gondii
            GT1]
 gi|221506791|gb|EEE32408.1| DNA-directed RNA polymerase II subunit, putative [Toxoplasma gondii
            VEG]
          Length = 1259

 Score =  470 bits (1209), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 248/496 (50%), Positives = 310/496 (62%), Gaps = 92/496 (18%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVY ++F+ RMDTLAH+LYYP KPLV TR+                             
Sbjct: 807  MGVYTSSFNHRMDTLAHLLYYPQKPLVCTRA----------------------------- 837

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                            ME+LRFRELPAGIN+IVAILCY+GYNQEDS+I++ S+++RG FR
Sbjct: 838  ----------------MEFLRFRELPAGINAIVAILCYSGYNQEDSLIMSQSSIDRGLFR 881

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+R+Y   E ++     E FE P+ +  QGM+   Y KLD DG++ PG RV GDDV+I
Sbjct: 882  SVFYRTYCSEERQQGSLMVESFEPPSIEHVQGMKRGDYSKLDADGLVEPGSRVLGDDVII 941

Query: 181  GKTITLPENEDELEGTTKRFS----------KRDGSTFLRNSETGIVDQVMLTLNVDGYK 230
            GKT  L +++  + G                KRD S  LR+SETG+VDQVML++N  G +
Sbjct: 942  GKTSPLFDDDTGMPGGAGAGPGGVPSPFAKRKRDCSLCLRSSETGVVDQVMLSVNNRGSR 1001

Query: 231  FCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQE------------------------- 265
            F K++VRSVRIPQ GDKFASRHGQKGT GI YR E                         
Sbjct: 1002 FTKVKVRSVRIPQTGDKFASRHGQKGTIGITYRTEDMPFNEEGITPDLIMNPHAVPSRMT 1061

Query: 266  -----------VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKI 314
                        ++  G  GDATPFN    V  IS  L   GY+  GNE +++GHTGR +
Sbjct: 1062 IGHLVECLLGKTAAIFGGEGDATPFN-GYAVLDISNRLHSLGYERFGNERLYHGHTGRHL 1120

Query: 315  NAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISH 374
             + +F GPTYYQRLKHMVDDKIH+RARGPV +L RQPMEG++R+GGLRFGEMERDC ISH
Sbjct: 1121 PSLIFFGPTYYQRLKHMVDDKIHARARGPVTMLTRQPMEGKSREGGLRFGEMERDCMISH 1180

Query: 375  GAAQFLRERLFEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKL 434
            GAA  L+ERLFE SD YR+HVC+ CGL+  A++    FECK C NK++ISQ+ +PYA KL
Sbjct: 1181 GAAHMLKERLFEQSDAYRVHVCDICGLVCTADLSRGNFECKLCDNKSRISQICIPYACKL 1240

Query: 435  LFQELMSMNIAPRLMV 450
            L QELM+M I PRL++
Sbjct: 1241 LLQELMAMCIYPRLVL 1256


>gi|429961469|gb|ELA41014.1| DNA-directed RNA polymerase II subunit RPB2 [Vittaforma corneae
           ATCC 50505]
          Length = 442

 Score =  467 bits (1201), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 244/489 (49%), Positives = 313/489 (64%), Gaps = 92/489 (18%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG++ TNF  RMDTL+++L+YP KPLVTTR                              
Sbjct: 6   MGIFSTNFAFRMDTLSNILFYPQKPLVTTR------------------------------ 35

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYLRF++LPAG N+IVAI CYTGYNQEDSVI+N SA++RG FR
Sbjct: 36  ---------------SMEYLRFKDLPAGQNAIVAIACYTGYNQEDSVIMNQSAIDRGLFR 80

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S  +R+Y D E        E+F KP+R+TC  M N  Y+KL  DG++ PG  V GDDV+I
Sbjct: 81  SFLYRTYADQEDMARPGVNEEFCKPDRRTCTKMGNYNYNKLGTDGLVFPGTEVVGDDVLI 140

Query: 181 GKTITLPENEDELEGTTKR---FSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVR 237
           GK   + +    +E +T+    +  +D ST ++ +E G+VD V++T N DGYKF K++VR
Sbjct: 141 GKVTPILD----VEKSTRENPFYIMKDSSTVMKKTEEGVVDTVIVT-NKDGYKFSKVKVR 195

Query: 238 SVRIPQIGDKFASRHGQKGTCGIQYRQE-------------------------------- 265
           S RIPQ+GDKFASRH QKGT GI  RQE                                
Sbjct: 196 STRIPQVGDKFASRHAQKGTVGITLRQEDMPFTSDGLVPDIIVNPHAMPMRMTIGHLLEC 255

Query: 266 ----VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLG 321
               VS+  GE GDATPF++ V +++IS  L+ + YQ RG EVM NG TGRK+ AQ+F+G
Sbjct: 256 LLGKVSALSGEEGDATPFSE-VTIEQISEKLKSFNYQSRGLEVMHNGMTGRKLRAQIFIG 314

Query: 322 PTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLR 381
           PTYYQRLKHMVDDK+H+RARG +Q++ RQP+EGR+RDGGLRFGEMERDC ISHGA+ FL+
Sbjct: 315 PTYYQRLKHMVDDKVHARARGSLQVMSRQPLEGRSRDGGLRFGEMERDCIISHGASAFLK 374

Query: 382 ERLFEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMS 441
           ERL +VSD Y  +VC+ CGL+AI+    +  ECKGC N+  IS++++PYA KLL QELM+
Sbjct: 375 ERLMDVSDCYTCYVCDKCGLLAISG--KDILECKGCSNQVAISKIQIPYAFKLLLQELMA 432

Query: 442 MNIAPRLMV 450
           MNIAPRL V
Sbjct: 433 MNIAPRLRV 441


>gi|154304837|ref|XP_001552822.1| hypothetical protein BC1G_09004 [Botryotinia fuckeliana B05.10]
          Length = 1207

 Score =  466 bits (1200), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 234/440 (53%), Positives = 296/440 (67%), Gaps = 84/440 (19%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV++TNF VRMDT+A++LYYP KPL TTR                              
Sbjct: 812  MGVFLTNFDVRMDTMANILYYPQKPLATTR------------------------------ 841

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SME+L+FRELPAG N+IVAI+CY+GYNQEDSVI+N S+++RG FR
Sbjct: 842  ---------------SMEFLKFRELPAGQNAIVAIMCYSGYNQEDSVIMNQSSIDRGLFR 886

Query: 121  SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
            S+F+R+Y D E KRIG +  EQFEKP R     ++   YDKLDDDGI+APG+RV+G D++
Sbjct: 887  SLFYRAYTDQE-KRIGMNVVEQFEKPYRSDTLKLKQGTYDKLDDDGIVAPGVRVTGADII 945

Query: 180  IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
            IGKT  +  + +E+   TK   KRD ST LR++E+G+VDQV++T N +G +F K+R+R+ 
Sbjct: 946  IGKTAPIAPDSEEMGQRTKAHVKRDASTPLRSTESGLVDQVLITTNAEGLRFVKVRMRTT 1005

Query: 240  RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
            +IPQIGDKFASRHGQKGT GI Y Q+                                  
Sbjct: 1006 KIPQIGDKFASRHGQKGTIGITYMQQDMPFTREGVVPDLIINPHAIPSRMTIAHLIECQL 1065

Query: 266  --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
              VS+ +G  GDATPF + V V  +S LL+ +GY  RG E+M++GHTGRK+ AQVFLGPT
Sbjct: 1066 SKVSTLRGLEGDATPFTE-VTVDSVSKLLRAHGYHSRGFEIMYHGHTGRKMMAQVFLGPT 1124

Query: 324  YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRER 383
            YYQRL+HMVDDKIH+RARGPVQIL RQP+EGRARDGGLRFGEMERDC ISHGA+ FL+ER
Sbjct: 1125 YYQRLRHMVDDKIHARARGPVQILTRQPVEGRARDGGLRFGEMERDCMISHGASAFLKER 1184

Query: 384  LFEVSDPYRIHVCNFCGLIA 403
            LFEVSD +R+H+C+ CGL+ 
Sbjct: 1185 LFEVSDAFRVHICDICGLMT 1204


>gi|385301281|gb|EIF45483.1| dna-directed rna polymerase [Dekkera bruxellensis AWRI1499]
          Length = 1155

 Score =  466 bits (1199), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 230/440 (52%), Positives = 292/440 (66%), Gaps = 82/440 (18%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVY+TN++VRMDT++++LYYP KPL  T+S                             
Sbjct: 753  MGVYLTNYNVRMDTMSNILYYPQKPLAKTQS----------------------------- 783

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                            ME+L+FRELPAG N IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 784  ----------------MEFLKFRELPAGQNCIVAIACYSGYNQEDSVIMNQSSIDRGLFR 827

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+FFR+Y D E +      E+FEKPNR    G +   Y+KLDDDG++APG+RVSGDD++I
Sbjct: 828  SLFFRTYMDQERRNGISIVEEFEKPNRSNTLGFKVGTYEKLDDDGLVAPGVRVSGDDIII 887

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT+ +P + +EL   TK  +KRD ST LR++E+GIVDQVMLT N +G KF K+R+R+ +
Sbjct: 888  GKTVPIPPDTEELGQRTKYHTKRDASTPLRSAESGIVDQVMLTTNAEGLKFVKVRMRTTK 947

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            +PQIGDKFASRHGQKGT G+ YR E                                   
Sbjct: 948  VPQIGDKFASRHGQKGTIGMTYRHEDMPFTAEGIVPDIIINPHCIPSRMTVAHLVECLLS 1007

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             V++ +G  GDATPF D + V  +S LL+E GYQ RG EVM+NGHTG+K+ AQ++LGPTY
Sbjct: 1008 KVAALRGYEGDATPFTD-LTVDAVSKLLRENGYQSRGFEVMYNGHTGKKLMAQIYLGPTY 1066

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRL+HMVDDKIH+RARGP Q L RQPMEGRARDGGLRFGEMERDC I+HG A FL+ERL
Sbjct: 1067 YQRLRHMVDDKIHARARGPYQNLTRQPMEGRARDGGLRFGEMERDCMIAHGVAGFLKERL 1126

Query: 385  FEVSDPYRIHVCNFCGLIAI 404
             + SD +R+HVC  CGL+++
Sbjct: 1127 MDSSDAFRVHVCGICGLMSV 1146


>gi|116201245|ref|XP_001226434.1| hypothetical protein CHGG_08507 [Chaetomium globosum CBS 148.51]
 gi|88177025|gb|EAQ84493.1| hypothetical protein CHGG_08507 [Chaetomium globosum CBS 148.51]
          Length = 1182

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 232/440 (52%), Positives = 296/440 (67%), Gaps = 84/440 (19%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG ++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 768  MGFFLTNYSRRMDTMANILYYPQKPLATTR------------------------------ 797

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 798  ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGIFR 842

Query: 121  SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
            S+FFRSY D E KR+G +  EQFEKPNR     ++++ YDKLD DGI+APG+RVSG+D++
Sbjct: 843  SLFFRSYTDCE-KRVGINIVEQFEKPNRSDTLRLKHSTYDKLDADGIVAPGIRVSGEDII 901

Query: 180  IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
            IGKT  +  +  EL   + +  KRD ST LR++E+GI+DQV++T N DG ++ K+RVR+ 
Sbjct: 902  IGKTCPINPDNAELGQRSNQHVKRDASTPLRSTESGIIDQVVMTTNQDGMRYVKVRVRTT 961

Query: 240  RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
            ++PQIGDKFASRHGQKGT G+ YRQE                                  
Sbjct: 962  KVPQIGDKFASRHGQKGTIGVTYRQEDMPFTAEGITPDIIINPHAIPSRMTIAHLIECLL 1021

Query: 266  --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
              VS+ KG  GDATPF D V V  +S LL+E+GYQ RG E+M++GHTGRK+ +Q+F GPT
Sbjct: 1022 SKVSTLKGMEGDATPFTD-VTVDSVSDLLREHGYQSRGFEIMYHGHTGRKLRSQIFFGPT 1080

Query: 324  YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRER 383
            YYQRL+HMVDDKIH+RARGP+QI+ RQP+EGRARDGGLRFGEMERDC I+HGAA FL+ER
Sbjct: 1081 YYQRLRHMVDDKIHARARGPLQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAASFLKER 1140

Query: 384  LFEVSDPYRIHVCNFCGLIA 403
            LFEVSD +R+H+C  CGL+ 
Sbjct: 1141 LFEVSDAFRVHICEICGLMT 1160


>gi|399949761|gb|AFP65418.1| DNA-directed RNA polymerase II second largest subunit [Chroomonas
            mesostigmatica CCMP1168]
          Length = 1222

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 235/489 (48%), Positives = 309/489 (63%), Gaps = 85/489 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            +G+Y  NF  RMDT+AH+LYYP KPLV TR+                             
Sbjct: 777  IGIYSMNFQFRMDTMAHILYYPQKPLVVTRA----------------------------- 807

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                            M++L +++ P GIN+IVAI CY GYNQEDS+I++  A++RG FR
Sbjct: 808  ----------------MDFLNYKDFPNGINAIVAIACYGGYNQEDSIIMSQDAIDRGLFR 851

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+RSYKD E  + G Q+E FE P  + C G ++  Y KLD DG+I+ G +VSGDD++I
Sbjct: 852  SVFYRSYKDEEKIKFGGQKEVFETPKIKDCVGFKSGSYTKLDLDGLISEGTKVSGDDIII 911

Query: 181  GKTITLP--ENEDELEGTTKRFS-KRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVR 237
            GKT+     E E  L  + + +  K+D ST +R+ E+GIVD+V++     G K  KIR+R
Sbjct: 912  GKTVPFNFFEAEYNLNSSERVYKFKKDSSTSVRSFESGIVDKVLIGTTDIGTKLVKIRIR 971

Query: 238  SVRIPQIGDKFASRHGQKGTCGIQYRQ--------------------------------- 264
            SVRIPQIGDKFASRHGQKG  G+ Y+Q                                 
Sbjct: 972  SVRIPQIGDKFASRHGQKGIVGMLYKQVDLPFTPDGIIPEIIMNPHAIPSRMTIGHLLEC 1031

Query: 265  ---EVSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLG 321
               +V++  G  GD +PF+  ++V+KI+  L+++ Y+  G E + NG TG  + A++F+G
Sbjct: 1032 LLSKVAALGGFEGDGSPFS-KISVEKITEQLEKFNYEKFGWENLANGATGELLEAKIFIG 1090

Query: 322  PTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLR 381
            PTYYQRLKHMVDDKIHSRARGPVQIL RQP+EGRARDGGLRFGEMERDC ISHGAA FL+
Sbjct: 1091 PTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRARDGGLRFGEMERDCMISHGAAVFLK 1150

Query: 382  ERLFEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMS 441
            +RL + SD + + VC+FCG IAI+N + N +ECK CK +  ISQ+++PYA KLLFQELMS
Sbjct: 1151 DRLLDQSDAFTVFVCDFCGFIAISNHKQNIYECKSCKPRNSISQIKIPYACKLLFQELMS 1210

Query: 442  MNIAPRLMV 450
            M I PR+M 
Sbjct: 1211 MAIGPRMMT 1219


>gi|67810752|gb|AAY82003.1| RNA polymerase II second largest subunit [Psilotum nudum]
          Length = 614

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 230/430 (53%), Positives = 288/430 (66%), Gaps = 84/430 (19%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+ +RMDTLA+VL+YP KPLVTTR+                             
Sbjct: 231 MGIYVTNYQLRMDTLAYVLFYPQKPLVTTRA----------------------------- 261

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN++VAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 262 ----------------MEHLHFRQLPAGINAVVAIACYSGYNQEDSVIMNQSSIDRGFFR 305

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+F+RSY+D E K+    +E+FE+PNR+T   MR+  YDKLDDDG+  PG RVSG+DV+I
Sbjct: 306 SIFYRSYRDEEXKQGTLVKEEFERPNRETXTNMRHGSYDKLDDDGLTPPGTRVSGEDVII 365

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT   P ++D+     +R+SKRD ST LR SE+G++DQV+LT N DG +F KIRVRS+R
Sbjct: 366 GKTT--PLSQDDTGNQAQRYSKRDQSTCLRXSESGMIDQVLLTTNADGLRFVKIRVRSIR 423

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           +PQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 424 VPQIGDKFSSRHGQKGTVGMTYTQEDMPWTQEGISPDIIVNPHAIPSRMTIGQLIECIMG 483

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V+++ G  GDATPF D V V  IS  L + GYQ+RG E M+NGHT R++NA +F+GPTY
Sbjct: 484 KVAAHMGREGDATPFTD-VTVDSISKALHKCGYQMRGFETMYNGHTXRRLNAMIFIGPTY 542

Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
           YQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGGLRFGEMERDC I+HGAA FL+ERL
Sbjct: 543 YQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERL 602

Query: 385 FEVSDPYRIH 394
           F+ SD YR+H
Sbjct: 603 FDQSDAYRVH 612


>gi|84996571|ref|XP_953007.1| DNA-directed RNA polymerase II subunit [Theileria annulata strain
            Ankara]
 gi|65304003|emb|CAI76382.1| DNA-directed RNA polymerase II subunit, putative [Theileria annulata]
          Length = 1223

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 241/489 (49%), Positives = 311/489 (63%), Gaps = 85/489 (17%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVY TN+++RMDTL+HVLYYP KPLV TR                              
Sbjct: 780  MGVYSTNYNLRMDTLSHVLYYPQKPLVCTR------------------------------ 809

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SME+LRFRELPAGINSIVAI+CYTGYNQEDS+I+N S+++RG FR
Sbjct: 810  ---------------SMEFLRFRELPAGINSIVAIMCYTGYNQEDSLIMNQSSIDRGLFR 854

Query: 121  SVFFRSYKDAESKRIGDQE-EQFEKPNRQ-TCQGMRNAIYDKLDDDGIIAPGLRVSGDDV 178
            SVF R+Y  +E K +G    E F KP        ++   Y KLD+DG+I PG RV GDD+
Sbjct: 855  SVFNRTYS-SEEKYLGSTVIESFTKPTSTGKFLNLKRGDYSKLDNDGLIEPGSRVLGDDI 913

Query: 179  VIGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRS 238
            +IG++  +  + +  + T +   + D S  LR +E G+VD V+LT+N  G KF K++VRS
Sbjct: 914  IIGRSSPVESDPNNPQYTPEMNLRMDCSCCLRPNENGVVDNVLLTVNNKGCKFTKVKVRS 973

Query: 239  VRIPQIGDKFASRHGQKGTCGIQYRQE--------------------------------- 265
            +R+PQIGDKFASRHGQKGT G+ +R E                                 
Sbjct: 974  IRVPQIGDKFASRHGQKGTIGMTFRMEDLPFTCDGIVPDIIMNPHAVPSRMTIGHLIECL 1033

Query: 266  ---VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGP 322
               V S  G  GDATPF+  + +++IS  L +  Y   GNE   NG TG  + +++F+GP
Sbjct: 1034 LGKVGSLVGMEGDATPFS-KMTLEQISNRLFKCRYSRYGNEAFHNGFTGNLMASKIFVGP 1092

Query: 323  TYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRE 382
            TYYQRLKHMV+DKIH+RARGPV +L RQP EGR+R+GGLRFGEMERDC ISHGAA+ L+E
Sbjct: 1093 TYYQRLKHMVEDKIHARARGPVTMLTRQPTEGRSREGGLRFGEMERDCMISHGAAKMLKE 1152

Query: 383  RLFEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSM 442
            RLF+ SD YR+HVCNFCGL+++AN+ N++F+C  C NKTQISQV +PYA KLL QELM+M
Sbjct: 1153 RLFDQSDAYRVHVCNFCGLLSVANLNNSSFQCTACDNKTQISQVTIPYACKLLLQELMAM 1212

Query: 443  NIAPRLMVV 451
             I P+L++ 
Sbjct: 1213 AIYPKLILT 1221


>gi|164428317|ref|XP_957106.2| DNA-directed RNA polymerase II 140 kDa polypeptide [Neurospora
           crassa OR74A]
 gi|157072100|gb|EAA27870.2| DNA-directed RNA polymerase II 140 kDa polypeptide [Neurospora
           crassa OR74A]
          Length = 1005

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 235/440 (53%), Positives = 291/440 (66%), Gaps = 84/440 (19%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG ++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 603 MGFFLTNYSRRMDTMANILYYPQKPLATTR------------------------------ 632

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 633 ---------------SMEYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGIFR 677

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+FFRSY D E KR+G +  EQFEKP+R      ++  YDKL++DGIIAPG+RV+GDD++
Sbjct: 678 SLFFRSYTDCE-KRVGINIVEQFEKPDRSNTLRPKHGTYDKLENDGIIAPGIRVTGDDII 736

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  +  EL   T +  KRD ST LR++E+GIVD V  T N DG ++ K+RVR+ 
Sbjct: 737 IGKTSPINPDNQELGQRTAQHVKRDASTPLRSTESGIVDSVAFTTNQDGLRYVKVRVRTT 796

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT G+ YRQE                                  
Sbjct: 797 KIPQIGDKFASRHGQKGTIGVTYRQEDMPFTAEGITPDIIINPHAIPSRMTIAHLIECLL 856

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             V + KG  GDATPF D V V  +S LL+E+GYQ RG E+M++GHTG+K+ AQVF GPT
Sbjct: 857 SKVGALKGMEGDATPFTD-VTVDSVSNLLREHGYQSRGFEIMYHGHTGKKLRAQVFFGPT 915

Query: 324 YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRER 383
           YYQRL+HMVDDKIH+RARGPVQI+ RQP+EGRARDGGLRFGEMERDC I+HGAA FL+ER
Sbjct: 916 YYQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAAAFLKER 975

Query: 384 LFEVSDPYRIHVCNFCGLIA 403
           LFEVSD +R+H+C  CGL+ 
Sbjct: 976 LFEVSDAFRVHICEICGLMT 995


>gi|2654279|emb|CAA47069.1| DNA-directed RNA polymerase [Euplotes octocarinatus]
          Length = 1194

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 247/488 (50%), Positives = 305/488 (62%), Gaps = 91/488 (18%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVY +N+ +RMDTLAHVLYYP KPLV  R                              
Sbjct: 757  MGVYCSNYQIRMDTLAHVLYYPQKPLVVAR------------------------------ 786

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           S+++   +ELP G +SIVAI CYTGYNQ DSVI++ + ++RG FR
Sbjct: 787  ---------------SLDFPHVKELPPGCDSIVAITCYTGYNQVDSVIMSQAPIDRGCFR 831

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+++  +     I  + E+  +    T  G RN  Y KLD DG+I PG  V GDD++I
Sbjct: 832  SVFYKNIFE-----IPVRVERLLRYPDSTVVGRRNGDYTKLDIDGLIFPGKNVLGDDIII 886

Query: 181  GKTITLPEN--EDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRS 238
            GKT  LP N   DE++  T    K+D ST LR+SE GI+D V+LT N +G  F K+++R+
Sbjct: 887  GKT-ALPRNLFNDEMDDQTN-LIKKDDSTSLRHSEKGIIDSVILTSNEEGDSFTKVKMRA 944

Query: 239  VRIPQIGDKFASRHGQKGTCGIQYRQE--------------------------------- 265
            +RIPQIGDKFASRHGQKGT G+ YRQE                                 
Sbjct: 945  IRIPQIGDKFASRHGQKGTVGMTYRQEDIPFTQEGIIPDIIVNPHAIPSRMTIGHLIECL 1004

Query: 266  ---VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGP 322
               V+  KGE GDATPF D V V+ IS  L   GYQ RGNEVM++G TGRK++  +FLGP
Sbjct: 1005 ASKVACFKGEEGDATPFQD-VTVEHISNDLHRLGYQKRGNEVMYDGWTGRKMDTMIFLGP 1063

Query: 323  TYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRE 382
            TYYQRLKHMVDDKIHSR+RGP+QIL RQP EGR+R GGLRFGEMERDC +SHGAA+FL+E
Sbjct: 1064 TYYQRLKHMVDDKIHSRSRGPLQILTRQPTEGRSRHGGLRFGEMERDCMVSHGAARFLKE 1123

Query: 383  RLFEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSM 442
            RLF+VSD Y +HVC  CGLI  AN+R   + C+GC+N T I QV LPYA KLLFQELM+M
Sbjct: 1124 RLFDVSDCYTVHVCRICGLICEANLRQQKYLCRGCQNSTNICQVGLPYACKLLFQELMAM 1183

Query: 443  NIAPRLMV 450
             IAPR++ 
Sbjct: 1184 QIAPRMIT 1191


>gi|71028664|ref|XP_763975.1| DNA-directed RNA polymerase II subunit [Theileria parva strain
            Muguga]
 gi|68350929|gb|EAN31692.1| DNA-directed RNA polymerase II subunit, putative [Theileria parva]
          Length = 1190

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 242/492 (49%), Positives = 313/492 (63%), Gaps = 91/492 (18%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVY TN+++RMDTL+HVLYYP KPLV TR                              
Sbjct: 747  MGVYSTNYNLRMDTLSHVLYYPQKPLVCTR------------------------------ 776

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SME+LRFRELPAGINSIVAI+CYTGYNQEDS+I+N S+++RG FR
Sbjct: 777  ---------------SMEFLRFRELPAGINSIVAIMCYTGYNQEDSLIMNQSSIDRGLFR 821

Query: 121  SVFFRSYKDAESKRIGDQE-EQFEKPNRQTCQG----MRNAIYDKLDDDGIIAPGLRVSG 175
            SVF R+Y  +E K +G    E F KP   T  G    ++   Y KLD+DG++ PG RV G
Sbjct: 822  SVFNRTYS-SEEKYLGSTVIESFTKP---TASGNFLNLKRGDYSKLDNDGLVEPGSRVLG 877

Query: 176  DDVVIGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIR 235
            DD++IG++  +  + +  + T++   + D S  LR +E G+VD V+LT+N  G KF K++
Sbjct: 878  DDIIIGRSSPVEADPNNPQYTSEMNLRMDCSCCLRPNENGVVDNVLLTVNNKGCKFTKVK 937

Query: 236  VRSVRIPQIGDKFASRHGQKGTCGIQYRQE------------------------------ 265
            VRS+R+PQIGDKFASRHGQKGT G+ +R E                              
Sbjct: 938  VRSIRVPQIGDKFASRHGQKGTIGMTFRMEDLPFTCDGIVPDIIMNPHAVPSRMTIGHLI 997

Query: 266  ------VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVF 319
                  V S  G  GDATPF+  + + +IS  L +  Y   GNE   NG TG  + +++F
Sbjct: 998  ECLLGKVGSLVGMEGDATPFS-KMTLDQISNRLFKCRYSRYGNEAFHNGFTGNLMASKIF 1056

Query: 320  LGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQF 379
            +GPTYYQRLKHMV+DKIH+RARGPV +L RQP EGR+R+GGLRFGEMERDC ISHGAA+ 
Sbjct: 1057 VGPTYYQRLKHMVEDKIHARARGPVTMLTRQPTEGRSREGGLRFGEMERDCMISHGAAKM 1116

Query: 380  LRERLFEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQEL 439
            L+ERLF+ SD YR+HVCNFCGL+++AN+ N++F+C  C NKTQISQV +PYA KLL QEL
Sbjct: 1117 LKERLFDQSDAYRVHVCNFCGLLSVANLNNSSFQCTACDNKTQISQVTIPYACKLLLQEL 1176

Query: 440  MSMNIAPRLMVV 451
            M+M I P+L++ 
Sbjct: 1177 MAMAIYPKLILT 1188


>gi|428180722|gb|EKX49588.1| hypothetical protein GUITHDRAFT_159421 [Guillardia theta CCMP2712]
          Length = 1185

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 250/491 (50%), Positives = 306/491 (62%), Gaps = 90/491 (18%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG+Y TN+ VR+DTLAHVLYYP KPLV T S                             
Sbjct: 733  MGIYATNYQVRIDTLAHVLYYPQKPLVKTHS----------------------------- 763

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                            M+YL+FRELPAG N IVAI  Y+GYNQEDS+I++ S+++RG FR
Sbjct: 764  ----------------MDYLKFRELPAGQNLIVAIAVYSGYNQEDSLIMSQSSIDRGMFR 807

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAI-YDKLDDDGIIAPGLRVSGDDVV 179
            S+F+RSY D +        EQFEKP R+      + + YDKLD DG++ P   V   D++
Sbjct: 808  SMFYRSYTDEQKTEGVLCLEQFEKPQREELGSASSRVNYDKLDVDGLVFPAQNVEDRDII 867

Query: 180  IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVD-GYKFCKIRVRS 238
            IGKT TL  N D+ +   +   KRD ST LR++E G+VDQV+LT N D G +F +I+VR+
Sbjct: 868  IGKT-TLVTNSDDSD-QAQIAVKRDSSTRLRHNEHGVVDQVLLTTNSDTGQRFVQIKVRA 925

Query: 239  VRIPQIGDKFASRHGQKGTCGIQYRQE--------------------------------- 265
            VR+PQIGDKFASRHGQKGT GI YRQ+                                 
Sbjct: 926  VRVPQIGDKFASRHGQKGTVGITYRQDDMPFTSEGVSPDLIVNPHAIPSRMTIGHLIETL 985

Query: 266  ---VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGP 322
               V    G+ GDATPFN+ VNV+ +S +L   GYQ  GNE ++NGHTGR + A VF GP
Sbjct: 986  LGKVGCLTGDEGDATPFNE-VNVKDVSDMLHSRGYQRHGNERLYNGHTGRPLTALVFFGP 1044

Query: 323  TYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRE 382
            TYYQRLKHMVDDKIHSRARGP Q+L RQPMEGRARDGGLRFGEMERDC I+HG+A  LRE
Sbjct: 1045 TYYQRLKHMVDDKIHSRARGPTQMLNRQPMEGRARDGGLRFGEMERDCMIAHGSANVLRE 1104

Query: 383  RLFEVSDPYRIHVCNFCGLIAIANMRNNTFECKG---CKNKTQISQVRLPYAAKLLFQEL 439
            +LF  SD Y  H+C  CGLIAIAN+ +N + C     C+N + I  + +PYAAKLLFQEL
Sbjct: 1105 KLFTQSDGYMTHICQDCGLIAIANLDSNLYRCPNQATCRNSS-IGMIEIPYAAKLLFQEL 1163

Query: 440  MSMNIAPRLMV 450
            M+M IAPRLM 
Sbjct: 1164 MAMQIAPRLMT 1174


>gi|440493525|gb|ELQ75984.1| RNA polymerase II, second largest subunit, partial
            [Trachipleistophora hominis]
          Length = 1381

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 247/498 (49%), Positives = 309/498 (62%), Gaps = 103/498 (20%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVY TNF +RMD+L+++L+YP KPLVTTR+                             
Sbjct: 931  MGVYATNFLLRMDSLSNILFYPQKPLVTTRA----------------------------- 961

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                            MEYLRFRELPAG N+IVAI CYTGYNQEDSVI+N SA++RG FR
Sbjct: 962  ----------------MEYLRFRELPAGQNAIVAIACYTGYNQEDSVIMNQSAIDRGLFR 1005

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S  +R+Y D E+       E F KP R     M+N  YDKLD+DGI+ PG+RV+G+DV+I
Sbjct: 1006 SFLYRTYTDQETMNGPGCVEVFAKPRRGEVLRMKNLNYDKLDEDGIVNPGVRVTGEDVLI 1065

Query: 181  GKTI-----------TLPENEDE---LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNV 226
            GK +           +L +N DE    E  T   S +D ST +R +E G+VD V++T N 
Sbjct: 1066 GKILPVIERMDVNGNSLIDNRDEKINTESNTMNVSWKDASTAMRPTEEGVVDSVIVT-NR 1124

Query: 227  DGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQE--------------------- 265
            +GYKF K+++RS R+P++GDKFASRHGQKGT GI  R E                     
Sbjct: 1125 EGYKFTKVKIRSCRVPEMGDKFASRHGQKGTIGITLRAEDMPFTSEGIIPDIIINPHCIP 1184

Query: 266  ---------------VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHT 310
                           VS+  GE GD TPF+D V V  IS  L+++GY+ RG E M+NG T
Sbjct: 1185 SRMTIGHLIECLLGKVSALAGEEGDGTPFSD-VTVGAISEQLKDFGYEHRGLETMYNGMT 1243

Query: 311  GRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDC 370
            GRK++AQ+F+GPTYYQRLKHMV DK+H+RA GP+Q+L RQP EGR+RDGGLRFGEMERDC
Sbjct: 1244 GRKLDAQIFIGPTYYQRLKHMVQDKVHARAHGPLQVLTRQPAEGRSRDGGLRFGEMERDC 1303

Query: 371  QISHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPY 430
             ISHG + FLRERLFEVSD + + VC  CGL  + +       CKGC NKT+++ V +PY
Sbjct: 1304 IISHGTSLFLRERLFEVSDFFSLVVCEQCGLFCLED------GCKGCGNKTKLAIVEMPY 1357

Query: 431  AAKLLFQELMSMNIAPRL 448
            A KLL QELM MNIAPRL
Sbjct: 1358 AFKLLLQELMGMNIAPRL 1375


>gi|429964497|gb|ELA46495.1| hypothetical protein VCUG_02039 [Vavraia culicis 'floridensis']
          Length = 1194

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 245/498 (49%), Positives = 307/498 (61%), Gaps = 103/498 (20%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVY TNF +RMD+L+++L+YP KPLVTTR+                             
Sbjct: 744  MGVYATNFLLRMDSLSNILFYPQKPLVTTRA----------------------------- 774

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                            MEYLRFRELPAG N+IVAI CYTGYNQEDSVI+N SA++RG FR
Sbjct: 775  ----------------MEYLRFRELPAGQNAIVAIACYTGYNQEDSVIMNQSAIDRGLFR 818

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S  +R+Y D E+       E F KP R     M+N  YDKLD+DGI+ PG RV+G+DV+I
Sbjct: 819  SFLYRTYTDQETMNGPGCVEVFAKPRRGEVLRMKNLNYDKLDEDGIVNPGARVTGEDVLI 878

Query: 181  GKTI-----------TLPENED---ELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNV 226
            GK +            L +N+D     E      S +D ST +R +E G+VD V++T N 
Sbjct: 879  GKILPVIERTGADGGALIDNKDGKINTESNATNVSWKDASTAMRPTEEGVVDSVIVT-NR 937

Query: 227  DGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQE--------------------- 265
            +GYKF K+++RS R+P++GDKFASRHGQKGT GI  R E                     
Sbjct: 938  EGYKFTKVKIRSCRVPEMGDKFASRHGQKGTIGITLRAEDMPFTSEGIIPDIIINPHCIP 997

Query: 266  ---------------VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHT 310
                           VS+  GE GD TPF+D V V+ IS  L+++GY+ RG E M+NG T
Sbjct: 998  SRMTIGHLIECLLGKVSALAGEEGDGTPFSD-VTVEAISEQLKDFGYEHRGLETMYNGMT 1056

Query: 311  GRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDC 370
            GRK++AQ+F+GPTYYQRLKHMV DK+H+RA GP+Q+L RQP EGR+RDGGLRFGEMERDC
Sbjct: 1057 GRKLDAQIFIGPTYYQRLKHMVQDKVHARAHGPLQVLTRQPAEGRSRDGGLRFGEMERDC 1116

Query: 371  QISHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPY 430
             ISHG + FLRERLFEVSD + + VC  CGL  + +       CKGC NKT+++ V +PY
Sbjct: 1117 IISHGTSLFLRERLFEVSDFFSLIVCEQCGLFCLED------GCKGCGNKTKLAIVEMPY 1170

Query: 431  AAKLLFQELMSMNIAPRL 448
            A KLL QELM MNIAPRL
Sbjct: 1171 AFKLLLQELMGMNIAPRL 1188


>gi|406864058|gb|EKD17104.1| DNA-directed RNA polymerase II subunit RPB2 [Marssonina brunnea f.
            sp. 'multigermtubi' MB_m1]
          Length = 1266

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 232/431 (53%), Positives = 286/431 (66%), Gaps = 84/431 (19%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGV++TN+ VRMDT+A++LYYP KPL TTR                              
Sbjct: 819  MGVFLTNYDVRMDTMANILYYPQKPLATTR------------------------------ 848

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 849  ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGIFR 893

Query: 121  SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
            S+F+R+Y D E KRIG +  E FEKP R     ++   YDKLD+DG++APG+RVSGDD++
Sbjct: 894  SLFYRAYTDQE-KRIGMNALESFEKPYRNDTMKLKQGTYDKLDEDGLVAPGVRVSGDDII 952

Query: 180  IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
            IGKT  LP +  +     K  +KRD ST LR++E GIVDQV+LT N +G KF K+R+R+ 
Sbjct: 953  IGKTAPLPADSQDFGIRNKAHTKRDASTPLRSTENGIVDQVLLTTNSEGQKFVKVRMRTT 1012

Query: 240  RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
            +IPQIGDKFASRHGQKGT GI YR E                                  
Sbjct: 1013 KIPQIGDKFASRHGQKGTIGITYRHEDMPFTCQGIVPDLIINPHAIPSRMTIAHLIECQL 1072

Query: 266  --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
              VS+ +G  GDATPF + V V  +S LL+ +GY  RG E+M++GHTGRK+ AQVFLGPT
Sbjct: 1073 SKVSTLRGLEGDATPFTE-VTVDSVSKLLRNHGYHSRGFEIMYHGHTGRKMMAQVFLGPT 1131

Query: 324  YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRER 383
            YYQRL+HMVDDKIH+RARGP+QIL RQP+EGRARDGGLRFGEMERDC ISHGAA FL+ER
Sbjct: 1132 YYQRLRHMVDDKIHARARGPLQILTRQPVEGRARDGGLRFGEMERDCMISHGAASFLKER 1191

Query: 384  LFEVSDPYRIH 394
            LFEVSD +R+H
Sbjct: 1192 LFEVSDAFRVH 1202


>gi|281204919|gb|EFA79113.1| RNA polymerase II core subunit [Polysphondylium pallidum PN500]
          Length = 1965

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 225/406 (55%), Positives = 273/406 (67%), Gaps = 82/406 (20%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYITN+ +RMDT+AHVL+YP KPLVTTR                              
Sbjct: 1111 MGVYITNYQLRMDTMAHVLFYPQKPLVTTR------------------------------ 1140

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYL FRELPAG N  VAI CY+GYNQEDS+ILN SA++RG FR
Sbjct: 1141 ---------------SMEYLHFRELPAGQNVCVAIACYSGYNQEDSLILNQSAIDRGLFR 1185

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+F+RSYKD + K+    EE FEKP+R TC GMR+  Y+K+D+DG++APG+RV+GDD++I
Sbjct: 1186 SMFYRSYKDEQKKQTSMMEETFEKPDRDTCVGMRHGSYEKIDEDGLVAPGVRVTGDDIII 1245

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  LP  +++L   T+R SKRD ST +R+SE GIVD V+LT + DG KF K+RVRS+R
Sbjct: 1246 GKTTPLPPQDEDLGPKTRRQSKRDSSTAMRSSENGIVDSVILTTSGDGLKFTKVRVRSMR 1305

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
             PQIGDKF+SRHGQKGTCG+ YRQE                                   
Sbjct: 1306 TPQIGDKFSSRHGQKGTCGMTYRQEDLPWTVEGIVPDIVVNPHAIPSRMTIGQLIECLLG 1365

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             VSS  G+ GDATPF D V V+ IS  L   GYQ+ G+EVM+NGHTGR+++AQ+F+GPTY
Sbjct: 1366 KVSSMTGDEGDATPFTD-VTVEAISKALHGIGYQMTGHEVMYNGHTGRRMDAQIFIGPTY 1424

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDC 370
            YQRLKHMVDDKIHSR+RGPVQIL RQP+EGR+RDGGLRFGEMERDC
Sbjct: 1425 YQRLKHMVDDKIHSRSRGPVQILTRQPVEGRSRDGGLRFGEMERDC 1470



 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 60/87 (68%), Positives = 75/87 (86%)

Query: 364  GEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQI 423
            G +  +C ISHGAAQFL+ERLF+ SD YR+HVC+ CGLIAIAN++ N +EC+ CKNKTQI
Sbjct: 1879 GIVAHNCMISHGAAQFLKERLFDQSDSYRVHVCDICGLIAIANLKKNHYECRRCKNKTQI 1938

Query: 424  SQVRLPYAAKLLFQELMSMNIAPRLMV 450
            SQV++PYAAKLLFQELM+M+IAPR+  
Sbjct: 1939 SQVKMPYAAKLLFQELMAMSIAPRMFT 1965


>gi|195054746|ref|XP_001994284.1| GH25170 [Drosophila grimshawi]
 gi|193896154|gb|EDV95020.1| GH25170 [Drosophila grimshawi]
          Length = 267

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 220/266 (82%), Positives = 226/266 (84%), Gaps = 36/266 (13%)

Query: 221 MLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQE--------------- 265
           MLTLN +GYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQE               
Sbjct: 1   MLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMAFTCEGLAPDIII 60

Query: 266 ---------------------VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEV 304
                                + SNKGEIGDATPFNDAVNVQKIST LQEYGY LRGNEV
Sbjct: 61  NPHAIPSRMTIGHLIECLQGKLGSNKGEIGDATPFNDAVNVQKISTFLQEYGYHLRGNEV 120

Query: 305 MFNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFG 364
           M+NGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFG
Sbjct: 121 MYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFG 180

Query: 365 EMERDCQISHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQIS 424
           EMERDCQISHGAAQFLRERLFEVSDPYR+H+CNFCGLIAIAN+RNNTFECKGCKNKTQIS
Sbjct: 181 EMERDCQISHGAAQFLRERLFEVSDPYRVHICNFCGLIAIANLRNNTFECKGCKNKTQIS 240

Query: 425 QVRLPYAAKLLFQELMSMNIAPRLMV 450
           QVRLPYAAKLLFQELMSMNIAPRLMV
Sbjct: 241 QVRLPYAAKLLFQELMSMNIAPRLMV 266


>gi|160331027|ref|XP_001712221.1| rpb2 [Hemiselmis andersenii]
 gi|159765668|gb|ABW97896.1| rpb2 [Hemiselmis andersenii]
          Length = 1222

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 230/490 (46%), Positives = 300/490 (61%), Gaps = 89/490 (18%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            +G+   NF  RMDT+AH+LYYP  PLV TR+                             
Sbjct: 777  IGINSLNFQFRMDTMAHILYYPQTPLVVTRA----------------------------- 807

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                            M+++ ++  P GINSIVAI CY GYNQEDS+I++  A++RG FR
Sbjct: 808  ----------------MKFMNYKNFPNGINSIVAIACYGGYNQEDSIIMSQDAIDRGLFR 851

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            SVF+R Y+D E  + G  +E FE P  + C G +   Y KLD DG+++ G RVSGDD++I
Sbjct: 852  SVFYRCYRDEEKTKFGGLKEIFEIPKFEDCIGCKTGSYQKLDLDGLVSEGTRVSGDDIII 911

Query: 181  GKTI-----TLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIR 235
            GKT+      +  +   LE T K   K+D ST  R+ E+G+VD+VM+  +  G K  KIR
Sbjct: 912  GKTVPYDFSKIKSSLAPLEKTLK--FKKDASTAARSFESGVVDKVMIGTSDLGTKLVKIR 969

Query: 236  VRSVRIPQIGDKFASRHGQKGTCGIQYRQ------------------------------- 264
            +RSVRIPQIGDKFASRHGQKG  G+ Y+Q                               
Sbjct: 970  IRSVRIPQIGDKFASRHGQKGIVGMLYKQVDLPFTKDGIIPDIIMNPHAIPSRMTIGHLL 1029

Query: 265  -----EVSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVF 319
                 +VS+  G  GD +PF + + V+KIS  L+   ++  G E+M NG TG  +NA +F
Sbjct: 1030 EGLLSKVSALGGMEGDGSPFCN-ITVEKISKKLESLNFEKNGWEIMRNGETGNNLNAMIF 1088

Query: 320  LGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQF 379
            +GPTYYQRLKHMVDDKIHSRARGPVQIL RQP+EGR+RDGGLRFGEMERDC +SHGA+ F
Sbjct: 1089 IGPTYYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDCMMSHGASIF 1148

Query: 380  LRERLFEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQEL 439
            L++RL + SD + I +C+ CGLIAIAN +   FEC+ C N+  IS V++PYA KLLFQEL
Sbjct: 1149 LKDRLMDQSDAFSIFLCDLCGLIAIANPKKRIFECRSCLNRNSISLVKIPYACKLLFQEL 1208

Query: 440  MSMNIAPRLM 449
            M+M IAPR++
Sbjct: 1209 MAMAIAPRMI 1218


>gi|520511|gb|AAA50226.1| RNA polymerase II, second largest subunit, partial [Crassostrea
           gigas]
          Length = 859

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 233/365 (63%), Positives = 259/365 (70%), Gaps = 81/365 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGVYITNFHVRMDTLAH L YP KPLVTTR                              
Sbjct: 540 MGVYITNFHVRMDTLAHGLLYPQKPLVTTR------------------------------ 569

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYLRFRELPAGINSIVAI  YTGYNQEDSVI+NASA+ERG+FR
Sbjct: 570 ---------------SMEYLRFRELPAGINSIVAIASYTGYNQEDSVIINASAIERGFFR 614

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S FFRSYKD+ESK+  DQEE FEKP R+  QGMR A+YDKLD+DGII+PG+RVSGDDV+I
Sbjct: 615 SFFFRSYKDSESKKGLDQEEIFEKPTRENVQGMRQAVYDKLDEDGIISPGIRVSGDDVLI 674

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT+TLP NEDELEGTTKRF+KRD S F+R SETGI+DQVM+TLN +GYKFCKIRVR+V+
Sbjct: 675 GKTLTLPANEDELEGTTKRFTKRDASVFMRRSETGIIDQVMITLNQEGYKFCKIRVRTVK 734

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            PQIGDKFASRHGQKGTCGI YRQE                                   
Sbjct: 735 TPQIGDKFASRHGQKGTCGITYRQEDMPFTCEGITPDIIINPHAVPSRMTIGHLIECLQG 794

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++NKGEIGDATPFNDAVNVQK+S LL +YGY  RGNEV+FNG TGRK+NAQ+FLGPTY
Sbjct: 795 KVAANKGEIGDATPFNDAVNVQKVSNLLHQYGYHQRGNEVLFNGFTGRKLNAQIFLGPTY 854

Query: 325 YQRLK 329
           YQRLK
Sbjct: 855 YQRLK 859


>gi|403224032|dbj|BAM42162.1| DNA-directed RNA polymerase [Theileria orientalis strain Shintoku]
          Length = 1189

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 236/489 (48%), Positives = 300/489 (61%), Gaps = 100/489 (20%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVY TN+++RMDTL+HVLYYP KPLV TR                              
Sbjct: 761  MGVYSTNYNLRMDTLSHVLYYPQKPLVCTR------------------------------ 790

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SME+LRFRELPAGINSIVAI+CYTGYNQEDS+I+N S+++RG FR
Sbjct: 791  ---------------SMEFLRFRELPAGINSIVAIMCYTGYNQEDSLIMNQSSIDRGLFR 835

Query: 121  SVFFRSYKDAESKRIGDQE-EQFEKPNRQT-CQGMRNAIYDKLDDDGIIAPGLRVSGDDV 178
            SVF R+Y  +E K +G    E F KP   +    ++   Y KLD+DG+I PG R   ++ 
Sbjct: 836  SVFNRTYS-SEEKYLGSTVIESFTKPTATSNFLNLKRGDYSKLDNDGLIEPGSRSDPNNP 894

Query: 179  VIGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRS 238
                 + L               + D S  LR +E G+VD V+LT+N  G KF K++VRS
Sbjct: 895  NYPAEMNL---------------RMDCSCCLRPNENGVVDNVLLTVNNKGCKFTKVKVRS 939

Query: 239  VRIPQIGDKFASRHGQKGTCGIQYRQE--------------------------------- 265
            VR+PQIGDKFASRHGQKGT G+ +R E                                 
Sbjct: 940  VRVPQIGDKFASRHGQKGTIGMTFRMEDLPFTCEGIVPDIIMNPHAVPSRMTIGHLIECL 999

Query: 266  ---VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGP 322
               V +  G  GDATPF+  + +++IS+ L +  Y   GNE   NG TG  + +++F+GP
Sbjct: 1000 LGKVGALVGMEGDATPFS-KMTLEQISSRLFKCHYSKYGNEAFHNGFTGNLMASKIFVGP 1058

Query: 323  TYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRE 382
            TYYQRLKHMV+DKIH+RARGPV +L RQP EGR+RDGGLRFGEMERDC ISHGAA+ L+E
Sbjct: 1059 TYYQRLKHMVEDKIHARARGPVTMLTRQPTEGRSRDGGLRFGEMERDCMISHGAAKMLKE 1118

Query: 383  RLFEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSM 442
            RLF+ SD YR+HVCN CGL++IAN+ N++F+C  C NKTQISQV +PYA KLL QELM+M
Sbjct: 1119 RLFDQSDAYRVHVCNLCGLLSIANLNNSSFQCTACDNKTQISQVTIPYACKLLLQELMAM 1178

Query: 443  NIAPRLMVV 451
             I P+L++ 
Sbjct: 1179 AIYPKLVLT 1187


>gi|367479107|gb|AEX16088.1| RPB2 [Mucor circinelloides f. lusitanicus]
          Length = 931

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 227/406 (55%), Positives = 265/406 (65%), Gaps = 82/406 (20%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGVY+TNF  RMDTLA++LYYP KPL TTR                              
Sbjct: 572 MGVYLTNFQTRMDTLANILYYPQKPLTTTR------------------------------ 601

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+LRFRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 602 ---------------SMEFLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 646

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFR+Y DAE K      E+FEKP R T   +++  Y+KL++DG+IAPG RVSGDD++I
Sbjct: 647 SLFFRTYMDAEKKAGMMFMEEFEKPTRDTTLRLKHGTYEKLEEDGLIAPGTRVSGDDIII 706

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T   +KRD ST LR++ETGIVDQVMLT N DG KF K+RVRS R
Sbjct: 707 GKTAPIPADSEELGQRTTTHNKRDASTPLRSTETGIVDQVMLTTNQDGLKFVKVRVRSTR 766

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           +PQ+GDKFASRHGQKGT G+ YRQE                                   
Sbjct: 767 VPQMGDKFASRHGQKGTIGMTYRQEDFPFSAEGITPDLIINPHAIPSRMTIGHMIECLLG 826

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            VS+  G  GDATPF D V V+ IS  LQ  GYQ RG EVM+NG TGRK+N QVFLGPTY
Sbjct: 827 KVSTLTGNEGDATPFTD-VTVEAISQALQAQGYQSRGFEVMYNGFTGRKLNVQVFLGPTY 885

Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDC 370
           YQRLKHMVDDKIHSRARGPVQIL RQP+EGR+RDGGLRFGEMERD 
Sbjct: 886 YQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERDW 931


>gi|320166143|gb|EFW43042.1| DNA-directed RNA polymerase II subunit RPB2 [Capsaspora owczarzaki
            ATCC 30864]
          Length = 1729

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 223/416 (53%), Positives = 272/416 (65%), Gaps = 86/416 (20%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MGVYI+NF VR+DT++H LYYP KPL TTR                              
Sbjct: 761  MGVYISNFQVRLDTMSHTLYYPQKPLTTTR------------------------------ 790

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYL F  LPAG+N+IVAI  Y+GYNQEDSV++N SA++RG FR
Sbjct: 791  ---------------SMEYLHFDSLPAGMNAIVAISVYSGYNQEDSVVMNQSAIDRGLFR 835

Query: 121  SVFFRSYKDAESKRIGDQ--EEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDV 178
            S+F+RSYKD E K  G    +E+FEKP+ +   GMR++ YDKLD DG++APG RVSGDD 
Sbjct: 836  SLFYRSYKD-EVKPAGLDVGDEEFEKPSLEIVAGMRHSSYDKLDADGLVAPGTRVSGDDF 894

Query: 179  VIGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRS 238
            +IGKT  +P+ ++EL  T KR+ KRD ST LR++E GIVD VML++N DG++F K+RVR 
Sbjct: 895  IIGKTTPIPDEKNELAQTMKRYRKRDASTALRSTENGIVDTVMLSVNEDGHRFVKVRVRG 954

Query: 239  VRIPQIGDKFASRHGQKGTCGIQYRQE--------------------------------- 265
            +RIPQIGDKFASRHGQKGTCGI YRQE                                 
Sbjct: 955  IRIPQIGDKFASRHGQKGTCGITYRQEDMPYNAEGITPDIIINPHAIPSRMTIGHLIECL 1014

Query: 266  ---VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGP 322
               V++  G+IGDATPFN  V V+ I+ LL+E+ Y   GNEV+FNGHTG+K+N QV+ GP
Sbjct: 1015 QGKVAALTGKIGDATPFNTDVTVKSIADLLKEFRYHPYGNEVLFNGHTGKKMNTQVYFGP 1074

Query: 323  TYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQ 378
            TYYQRLKHMVDDKIHSR RGP+  L RQP+EGRARDGGLRFGEMERDC   HG A+
Sbjct: 1075 TYYQRLKHMVDDKIHSRQRGPLTNLTRQPVEGRARDGGLRFGEMERDCL--HGDAR 1128



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 62/81 (76%), Positives = 72/81 (88%)

Query: 369  DCQISHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRL 428
            +C I+HGAAQFLRERLFE SD  R+HVC+ CGLIAIAN++ N FEC+ C+NKTQISQ+ L
Sbjct: 1639 NCMIAHGAAQFLRERLFEQSDFSRVHVCDICGLIAIANLKKNEFECRACRNKTQISQIFL 1698

Query: 429  PYAAKLLFQELMSMNIAPRLM 449
            PYAAKLLFQELMSM+IAPRLM
Sbjct: 1699 PYAAKLLFQELMSMSIAPRLM 1719


>gi|115454339|ref|NP_001050770.1| Os03g0646800 [Oryza sativa Japonica Group]
 gi|113549241|dbj|BAF12684.1| Os03g0646800, partial [Oryza sativa Japonica Group]
          Length = 368

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 210/348 (60%), Positives = 255/348 (73%), Gaps = 39/348 (11%)

Query: 139 EEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENEDELEGTTK 198
           +E+F +PNR+   GMR+  YDKLDDDG+  PG RVSG+DV+IGKT  +P+  D+ +G   
Sbjct: 12  KEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIPQ--DDAQGQAT 69

Query: 199 RFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGTC 258
           R++KRD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVRIPQIGDKF+SRHGQKGT 
Sbjct: 70  RYTKRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTV 129

Query: 259 GIQYRQE------------------------------------VSSNKGEIGDATPFNDA 282
           G+ Y QE                                    V+++ G+ GDATPF D 
Sbjct: 130 GMTYTQEDMPWTIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTD- 188

Query: 283 VNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARG 342
           V V  IS  L + GYQ+RG E M+NGHTGRK+ A +FLGPTYYQRLKHMVDDKIHSR RG
Sbjct: 189 VTVDNISKALHKCGYQMRGFETMYNGHTGRKLTAMIFLGPTYYQRLKHMVDDKIHSRGRG 248

Query: 343 PVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNFCGLI 402
           PVQIL RQP EGR+RDGGLRFGEMERDC I+HGAA FL+ERLF+ SD YR+HVC  CGLI
Sbjct: 249 PVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAFFLKERLFDQSDAYRVHVCEKCGLI 308

Query: 403 AIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMV 450
           AIAN++ N+FEC+GCKNKT I QV +PYA KLLFQELM+M IAPR++ 
Sbjct: 309 AIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 356


>gi|224031673|gb|ACN34912.1| unknown [Zea mays]
 gi|413933608|gb|AFW68159.1| putative DNA-directed RNA polymerase II subunit family protein [Zea
           mays]
          Length = 362

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 210/348 (60%), Positives = 253/348 (72%), Gaps = 39/348 (11%)

Query: 139 EEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENEDELEGTTK 198
           +E+F +PNR+   GMR+  YDKLDDDG+  PG RVSG+DV+IGKT  +P+  D+ +G   
Sbjct: 6   KEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIPQ--DDAQGQAS 63

Query: 199 RFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGTC 258
           R+SKRD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVRIPQIGDKF+SRHGQKGT 
Sbjct: 64  RYSKRDHSTALRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTV 123

Query: 259 GIQYRQE------------------------------------VSSNKGEIGDATPFNDA 282
           G+ Y QE                                    V++  G+ GDATPF D 
Sbjct: 124 GMTYTQEDMPWTIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAQMGKEGDATPFTD- 182

Query: 283 VNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARG 342
           V V  IS  L +  YQ+RG E M+NGHTGRK+ A +FLGPTYYQRLKHMVDDKIHSR RG
Sbjct: 183 VTVDNISKALHKCNYQMRGFETMYNGHTGRKLTAMIFLGPTYYQRLKHMVDDKIHSRGRG 242

Query: 343 PVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNFCGLI 402
           PVQIL RQP EGR+RDGGLRFGEMERDC I+HGAA FL+ERLF+ SD YR+HVC  CGLI
Sbjct: 243 PVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAFFLKERLFDQSDAYRVHVCEKCGLI 302

Query: 403 AIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMV 450
           AIAN++ N+FEC+GCKNKT I QV +PYA KLLFQELM+M IAPR++ 
Sbjct: 303 AIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 350


>gi|414871743|tpg|DAA50300.1| TPA: putative DNA-directed RNA polymerase II subunit family protein
           [Zea mays]
          Length = 362

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 210/348 (60%), Positives = 253/348 (72%), Gaps = 39/348 (11%)

Query: 139 EEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENEDELEGTTK 198
           +E+F +PNR+   GMR+  YDKLDDDG+  PG RVSG+DV+IGKT  +P+  D+ +G   
Sbjct: 6   KEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIPQ--DDAQGQAS 63

Query: 199 RFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGTC 258
           R+SKRD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVRIPQIGDKF+SRHGQKGT 
Sbjct: 64  RYSKRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQKGTV 123

Query: 259 GIQYRQE------------------------------------VSSNKGEIGDATPFNDA 282
           G+ Y QE                                    V++  G+ GDATPF D 
Sbjct: 124 GMTYTQEDMPWTIEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAQMGKEGDATPFTD- 182

Query: 283 VNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARG 342
           V V  IS  L +  YQ+RG E M+NGHTGRK+ A +FLGPTYYQRLKHMVDDKIHSR RG
Sbjct: 183 VTVDNISKALHKCNYQMRGFETMYNGHTGRKLTAMIFLGPTYYQRLKHMVDDKIHSRGRG 242

Query: 343 PVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNFCGLI 402
           PVQIL RQP EGR+RDGGLRFGEMERDC I+HGAA FL+ERLF+ SD YR+HVC  CGLI
Sbjct: 243 PVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAFFLKERLFDQSDAYRVHVCEKCGLI 302

Query: 403 AIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMV 450
           AIAN++ N+FEC+GCKNKT I QV +PYA KLLFQELM+M IAPR++ 
Sbjct: 303 AIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAIAPRMLT 350


>gi|520515|gb|AAA50228.1| RNA polymerase II, second largest subunit, partial [Helobdella
           stagnalis]
          Length = 859

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 217/365 (59%), Positives = 253/365 (69%), Gaps = 81/365 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGVYITN+HVRMDTLAHVL+YP KPLVTTR                              
Sbjct: 540 MGVYITNYHVRMDTLAHVLFYPQKPLVTTR------------------------------ 569

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAGINSI AI  YTGYNQEDSVI+N SAV+RG+FR
Sbjct: 570 ---------------SMEYLKFRELPAGINSITAIASYTGYNQEDSVIMNESAVDRGFFR 614

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           SVF+RSYKDAESK+  DQEE FEKP+R   QGMR   YDKLDDDGII+PG RVSGDD ++
Sbjct: 615 SVFYRSYKDAESKKGFDQEEVFEKPDRSYVQGMRANSYDKLDDDGIISPGTRVSGDDALV 674

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKTI+LPENEDELEG  +R++KRD S F+R SETG+V QVM+T+N DG+KF KIRVR+V+
Sbjct: 675 GKTISLPENEDELEGQARRYTKRDCSVFMRKSETGVVGQVMVTINQDGFKFTKIRVRTVK 734

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            PQIGDKFASRHGQKGTCG++YRQE                                   
Sbjct: 735 TPQIGDKFASRHGQKGTCGMRYRQEDMPFTAEGITPDIIINPHAIPSRMTVGHLIECLQG 794

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++N+GEI DATPFND VNV+KIS +L+EYGY + GNEV++NGHTGRKI +Q+FLGPTY
Sbjct: 795 KVAANRGEIADATPFNDTVNVRKISDVLKEYGYHMHGNEVLYNGHTGRKIVSQIFLGPTY 854

Query: 325 YQRLK 329
           YQRLK
Sbjct: 855 YQRLK 859


>gi|520507|gb|AAA50224.1| RNA polymerase II, second largest subunit, partial [Caenorhabditis
           elegans]
          Length = 859

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 214/365 (58%), Positives = 248/365 (67%), Gaps = 81/365 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGVY TNFHVRMDTLAHVLYYP KPLVTTR                              
Sbjct: 540 MGVYTTNFHVRMDTLAHVLYYPQKPLVTTR------------------------------ 569

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYLRF ELPAGIN+IVAIL Y+GYNQEDSVI+N SA++RG FR
Sbjct: 570 ---------------SMEYLRFNELPAGINAIVAILSYSGYNQEDSVIMNNSAIDRGLFR 614

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           SVF+RSY+D E+      EE  EKP R+ C GMR+++YDKLD+DGII+PG+RVSGDDV+I
Sbjct: 615 SVFYRSYRDNEANLDNANEELIEKPTREKCSGMRHSLYDKLDEDGIISPGMRVSGDDVII 674

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT+ LP+ +D+L+ + K++ KRD STFLR+SETGIVDQVML+LN DG KF KIR+RSVR
Sbjct: 675 GKTVALPDIDDDLDASGKKYPKRDASTFLRSSETGIVDQVMLSLNSDGNKFVKIRMRSVR 734

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           +PQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 735 LPQIGDKFASRHGQKGTMGIMYRQEDMPFTAEGLTPDIIINPHAVPSRMTIGHLIECLQG 794

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            +S+NKGEIGDATPFND VNVQKIS LL EYGY LRGNEVM+NGHTG+K+  Q+F GPTY
Sbjct: 795 KLSANKGEIGDATPFNDTVNVQKISGLLCEYGYHLRGNEVMYNGHTGKKLTTQIFFGPTY 854

Query: 325 YQRLK 329
           YQRLK
Sbjct: 855 YQRLK 859


>gi|40643998|emb|CAD91516.1| RNA polymerase II second largest subunit [Garrya elliptica]
          Length = 576

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 218/405 (53%), Positives = 264/405 (65%), Gaps = 84/405 (20%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+  RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 220 MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA----------------------------- 250

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 251 ----------------MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 294

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY+D E K     +E F +P+R    GMR+  YDKLDDDG+  PG RVSG+DV+I
Sbjct: 295 SLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 354

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT   P  +D+ +G   R++KRD ST LR+SETG+VDQV+LT N DG +F K+RVRSVR
Sbjct: 355 GKTT--PIAQDDSQGQASRYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVR 412

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 413 IPQIGDKFSSRHGQKGTIGMTYTQEDMPWTLEGITPDIIVNPHAIPSRMTIGQLIECIMG 472

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGR++ A +FLGPTY
Sbjct: 473 KVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTY 531

Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERD 369
           YQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGGLRFGEMERD
Sbjct: 532 YQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERD 576


>gi|120561277|gb|ABM27023.1| RNA polymerase II second largest subunit, partial [Neocallimastix
           frontalis]
          Length = 915

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 216/399 (54%), Positives = 266/399 (66%), Gaps = 82/399 (20%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF +RMDT+A++LYYP KPLVTTR+                             
Sbjct: 563 MGIYLTNFQLRMDTMANILYYPQKPLVTTRA----------------------------- 593

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           MEYLRFR+LPAG N+IVAI CY+GYNQEDS+I+N S+++RG FR
Sbjct: 594 ----------------MEYLRFRDLPAGQNAIVAIACYSGYNQEDSIIMNQSSIDRGLFR 637

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+F+RSY D E K      E FEKP R+TC  +R+  Y+KL+DDG+IAPG+RV+GDD++I
Sbjct: 638 SLFYRSYMDQEKKVGMFNVENFEKPTRETCLRLRHGTYEKLEDDGLIAPGIRVTGDDIII 697

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKTI L ++ +EL   T+  +KRD ST LR++ETGIVD+V++T N DG +F K+RVRS R
Sbjct: 698 GKTIPLSQDSEELGQRTEHHTKRDASTPLRSTETGIVDRVLVTNNQDGMRFVKVRVRSTR 757

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQ+GDKFASRHGQKGT G+ YR E                                   
Sbjct: 758 IPQMGDKFASRHGQKGTVGMTYRTEDMPFTVNGITPDIIINPHAIPSRMTIGHLVECLLG 817

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            VS+  G+ GDATPF D V V+ IS LL+E GYQ RG EVMFNGHTG+K+ AQ+FLGPTY
Sbjct: 818 KVSTLTGDEGDATPFTD-VTVEAISKLLRENGYQSRGFEVMFNGHTGKKLQAQIFLGPTY 876

Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRF 363
           YQRLKHMVDDKIHSRARGPVQIL RQP+EGR+RDGGLRF
Sbjct: 877 YQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRF 915


>gi|120561275|gb|ABM27022.1| RNA polymerase II second largest subunit, partial [Neocallimastix
           frontalis]
          Length = 915

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 216/399 (54%), Positives = 265/399 (66%), Gaps = 82/399 (20%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF +RMDT+A++LYYP KPLVTTR+                             
Sbjct: 563 MGIYLTNFQLRMDTMANILYYPQKPLVTTRA----------------------------- 593

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           MEYLRFR+LPAG N+IVAI CY+GYNQEDS+I+N S+++RG FR
Sbjct: 594 ----------------MEYLRFRDLPAGQNAIVAIACYSGYNQEDSIIMNQSSIDRGLFR 637

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+F+RSY D E K      E FEKP R+TC  +R+  Y+KL+DDG+IAPG+RV+GDD++I
Sbjct: 638 SLFYRSYMDQEKKVGMFNVENFEKPTRETCLRLRHGTYEKLEDDGLIAPGIRVTGDDIII 697

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKTI L ++  EL   T+  +KRD ST LR++ETGIVD+V++T N DG KF K+RVRS R
Sbjct: 698 GKTIPLSQDSQELGQRTEHHTKRDASTPLRSTETGIVDRVLVTNNQDGMKFVKVRVRSTR 757

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQ+GDKFASRHGQKGT G+ YR E                                   
Sbjct: 758 IPQMGDKFASRHGQKGTVGMTYRTEDMPFTFNGITPDIIINPHAIPSRMTIGHLVECLLG 817

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            VS+  G+ GDATPF D V V+ IS LL+E G+Q RG EVMFNGHTG+K+ AQ+FLGPTY
Sbjct: 818 KVSTLTGDEGDATPFTD-VTVEAISKLLRENGFQSRGFEVMFNGHTGKKLQAQIFLGPTY 876

Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRF 363
           YQRLKHMVDDKIHSRARGPVQIL RQP+EGR+RDGGLRF
Sbjct: 877 YQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRF 915


>gi|55583704|gb|AAV53371.1| RNA polymerase II second largest subunit [Strobilomyces floccopus]
          Length = 908

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 215/405 (53%), Positives = 266/405 (65%), Gaps = 82/405 (20%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF VRMDT+A++LYYP KPL TTR                              
Sbjct: 550 MGIYLTNFLVRMDTMANILYYPQKPLATTR------------------------------ 579

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQED VI+N S+++RG FR
Sbjct: 580 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDFVIMNQSSIDRGLFR 624

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP R T   M++  YDKL+DDG+IAPG  V G+D++I
Sbjct: 625 SIYYRSYMDLEKKSGVQQLEEFEKPTRDTTLRMKHGTYDKLEDDGLIAPGTNVKGEDIII 684

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E GIVDQV++T N +G KF K+RVRS R
Sbjct: 685 GKTAPIPPDSEELGQRTRTHNRRDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTR 744

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 745 IPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDLVINPHAIPSRMTIGHLVECLLS 804

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D + V+ +ST L++ GYQ RG EVM++GHTG+K+ AQ++LGPTY
Sbjct: 805 KVATLIGNEGDATPFTD-LTVESVSTFLRQKGYQSRGLEVMYHGHTGKKLQAQIYLGPTY 863

Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERD 369
           YQRLKHMVDDKIHSRARGPVQIL RQP+EGR+RDGGLRFGEMERD
Sbjct: 864 YQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEMERD 908


>gi|83415483|gb|ABC17949.1| RNA polymerase II second largest subunit, partial [Mortierella
           verticillata]
          Length = 721

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 219/399 (54%), Positives = 260/399 (65%), Gaps = 82/399 (20%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+ VRMDTLA++LYYP KPL TTR                              
Sbjct: 369 MGIYVTNYQVRMDTLANILYYPQKPLATTR------------------------------ 398

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYLRFRELPAG N++VAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 399 ---------------SMEYLRFRELPAGQNAVVAILCYSGYNQEDSVIMNQSSIDRGLFR 443

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           SV+FR+Y D E K      E+FEKP R+    +R+  Y+KLDDDG+IAPG RVSGDD++I
Sbjct: 444 SVYFRTYMDQEKKIGMTTMEEFEKPTREHVLRLRHGTYEKLDDDGLIAPGTRVSGDDIII 503

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P +  E+   T   SK D ST LR++ETGIVDQVMLT N +G KF K+RVRS R
Sbjct: 504 GKTKPIPVDSTEMGQRTGSHSKLDASTPLRSTETGIVDQVMLTTNHEGVKFVKVRVRSTR 563

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           +PQ+GDKFASRHGQKGT GI YRQE                                   
Sbjct: 564 VPQMGDKFASRHGQKGTIGITYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLVECLLS 623

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            VS+ +G  GDATPF D V V+ IS  L+++ YQ RG EVM+NGHTGRK+ AQVFLGPTY
Sbjct: 624 KVSTLEGSEGDATPFTD-VTVEAISEALKKHNYQQRGFEVMYNGHTGRKLAAQVFLGPTY 682

Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRF 363
           YQRLKHMVDDKIHSRARGPVQIL RQP+EGR+RDGGLRF
Sbjct: 683 YQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRF 721


>gi|83415489|gb|ABC17952.1| RNA polymerase II second largest subunit, partial [Umbelopsis
           ramanniana]
          Length = 717

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 218/399 (54%), Positives = 258/399 (64%), Gaps = 82/399 (20%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGVY+TN+ VRMDTLA++LYYP KPL TTR                              
Sbjct: 365 MGVYLTNYQVRMDTLANILYYPQKPLTTTR------------------------------ 394

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+LRFRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 395 ---------------SMEFLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 439

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+F R+Y DAE K      E+FEKP R     +++  Y+KL++DG+IAPG RVSGDD++I
Sbjct: 440 SLFLRTYMDAEKKAGMMFMEEFEKPTRDNTLRLKHGTYEKLEEDGLIAPGTRVSGDDIII 499

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   TK  +KRD ST LR++ETGIVDQVM+T N DG KF K+RVRS R
Sbjct: 500 GKTAPIPADSEELGQRTKGHNKRDASTPLRSTETGIVDQVMVTTNQDGLKFVKVRVRSTR 559

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           +PQ+GDKFASRHGQKGT GI YR E                                   
Sbjct: 560 VPQMGDKFASRHGQKGTIGITYRHEDLPFSGEGVTPDIIINPHAIPSRMTIGHLVECLLG 619

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V +  G  GDATPF D V V+ +S  L E GYQ RG EVM+NGHTGRK+ AQVFLGPTY
Sbjct: 620 KVPTLTGNEGDATPFTD-VTVEAVSQALAEQGYQQRGFEVMYNGHTGRKLAAQVFLGPTY 678

Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRF 363
           YQRLKHMVDDKIHSRARGPVQIL RQP+EGR+RDGGLRF
Sbjct: 679 YQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRF 717


>gi|83415467|gb|ABC17941.1| RNA polymerase II second largest subunit, partial [Endogone
           pisiformis]
          Length = 720

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 217/397 (54%), Positives = 259/397 (65%), Gaps = 82/397 (20%)

Query: 3   VYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSV 62
           +Y+TN+ VRMDTLA++LYYP KPLVTTR                                
Sbjct: 370 IYLTNYQVRMDTLANILYYPQKPLVTTR-------------------------------- 397

Query: 63  ILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSV 122
                        SMEYLRFRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FRS+
Sbjct: 398 -------------SMEYLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSL 444

Query: 123 FFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGK 182
           FFRSY DAE K      E+FEKP R T   +++  Y+KL++DG+IAPG RVSG+D++IGK
Sbjct: 445 FFRSYMDAEKKVGMMVMEEFEKPTRDTTLRLKHGTYEKLEEDGLIAPGTRVSGEDIIIGK 504

Query: 183 TITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIP 242
           T  +P + +EL   T   SKRD ST LR++ETGIVDQVM+T N +G KF K+RVRS R+P
Sbjct: 505 TAPIPPDSEELGQRTGTHSKRDASTPLRSTETGIVDQVMVTTNQEGLKFVKVRVRSTRVP 564

Query: 243 QIGDKFASRHGQKGTCGIQYRQE------------------------------------V 266
           Q+GDKFASRHGQKGT GI YRQE                                    V
Sbjct: 565 QMGDKFASRHGQKGTIGITYRQEDMPFSAEGVTPDLIINPHAIPSRMTIGHLVECLLGKV 624

Query: 267 SSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQ 326
           S+  G  GDATPF D V V+ IS  L+   YQ RG EVM+NGHTGRK+ AQV+LGPTYYQ
Sbjct: 625 STLTGNEGDATPFTD-VTVEAISQALKAQNYQQRGFEVMYNGHTGRKLAAQVYLGPTYYQ 683

Query: 327 RLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRF 363
           RLKHMVDDKIHSRARGP+QIL RQP+EGR+RDGGLRF
Sbjct: 684 RLKHMVDDKIHSRARGPLQILTRQPVEGRSRDGGLRF 720


>gi|46277257|gb|AAS86819.1| RNA polymerase II second largest subunit, partial [Dioscorea
           sansibarensis]
          Length = 572

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 212/398 (53%), Positives = 260/398 (65%), Gaps = 84/398 (21%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+ +RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 223 MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA----------------------------- 253

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 254 ----------------MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 297

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY+D E K     +E F KPNR+   GMR+  YDKLDDDG+  PG RVSG+DV+I
Sbjct: 298 SLFFRSYRDEEKKMGTLVKEDFGKPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 357

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P  +DE +G   R+++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVR
Sbjct: 358 GKTSPIP--QDESQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVR 415

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 416 IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMG 475

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGRK+ A +FLGPTY
Sbjct: 476 KVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRKLTAMIFLGPTY 534

Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLR 362
           YQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGGLR
Sbjct: 535 YQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLR 572


>gi|120561279|gb|ABM27024.1| RNA polymerase II second largest subunit, partial [Monosiga
           brevicollis]
          Length = 904

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 218/399 (54%), Positives = 257/399 (64%), Gaps = 85/399 (21%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGVYITNFHVRMDTLAHVLYYP +PLV TR                              
Sbjct: 555 MGVYITNFHVRMDTLAHVLYYPQRPLVQTR------------------------------ 584

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SM YLRF ELPAGIN+IV I+ YTGYNQEDSVI+N  +VERG FR
Sbjct: 585 ---------------SMNYLRFAELPAGINAIVGIMTYTGYNQEDSVIMNRYSVERGLFR 629

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           SVF+RSY  +E    G +  + +KP+R+ C GMR A YDKL+DDGI+APG+RVSGDD ++
Sbjct: 630 SVFYRSYAASEHSERG-EIIKIDKPSRENCIGMRRANYDKLEDDGIVAPGIRVSGDDAIV 688

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           G+ + LPE   +  G   RF KRD S FLR+SE+GI+D VM+++N  G KF KIRVRSVR
Sbjct: 689 GRLLELPEATRQASG--GRFEKRDKSLFLRSSESGIIDGVMISVNQKGEKFVKIRVRSVR 746

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            PQIGDKFASRHGQKGTCG+QY QE                                   
Sbjct: 747 TPQIGDKFASRHGQKGTCGMQYAQEDMPFAASGVVPDIIVNPHAIPSRMTIGHLIECLLG 806

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             +S+ G IGDATPF   VNV  ++ +L+ Y +Q  GNEVM+NG TGRK+ AQVFLGPTY
Sbjct: 807 KSASHSGTIGDATPFT-KVNVTDVADILEGYNFQRYGNEVMYNGFTGRKMQAQVFLGPTY 865

Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRF 363
           YQRLKHMVDDKIH+RARGP+Q L RQPMEGR+RDGGLRF
Sbjct: 866 YQRLKHMVDDKIHARARGPLQNLTRQPMEGRSRDGGLRF 904


>gi|83415469|gb|ABC17942.1| RNA polymerase II second largest subunit, partial [Basidiobolus
           ranarum]
          Length = 720

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 211/399 (52%), Positives = 260/399 (65%), Gaps = 82/399 (20%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+ +RMDT+A++LYYP KPL TTR+                             
Sbjct: 368 MGIYVTNYQLRMDTMANILYYPQKPLCTTRA----------------------------- 398

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           MEYLRFRELPAG N+IVAILCY+GYNQEDS+I+N ++++RG FR
Sbjct: 399 ----------------MEYLRFRELPAGQNAIVAILCYSGYNQEDSLIMNQTSIDRGLFR 442

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+F+RSY D E K      E+FEKP R++   ++   Y+KL+ DG+IAPG RVSGDD++I
Sbjct: 443 SIFYRSYMDQEKKVGMMVMEEFEKPTRESTLRLKRGTYEKLEGDGLIAPGTRVSGDDIII 502

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   TK  +KRD ST LR++E GIVDQVMLT N +G KF K+RVRS R
Sbjct: 503 GKTAPIPPDSEELGQRTKTHNKRDASTPLRSTENGIVDQVMLTTNQEGLKFVKVRVRSTR 562

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           +PQ+GDKFASRHGQKGT G+ YRQE                                   
Sbjct: 563 VPQMGDKFASRHGQKGTIGVTYRQEDMPFNREGIVPDLIINPHAIPSRMTIGHMVECLLS 622

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            VS+  G  GDATPF + V V+ IS  LQE+GYQ RG EV+FNGHTGRK+ AQ++ GPTY
Sbjct: 623 KVSTLSGNEGDATPFTE-VTVEAISHALQEHGYQKRGFEVLFNGHTGRKLTAQIYFGPTY 681

Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRF 363
           YQRLKHMVDDKIHSRARGPVQIL RQP+EGR+RDGGLRF
Sbjct: 682 YQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRF 720


>gi|6606133|gb|AAF19079.1|AF107807_1 DNA-dependent RNA polymerase II RPB140, partial [Leotia viscosa]
          Length = 938

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/400 (53%), Positives = 264/400 (66%), Gaps = 84/400 (21%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TNF  RMDT+A++LYYP KPL TTR                              
Sbjct: 586 MGVFLTNFDQRMDTMANILYYPQKPLATTR------------------------------ 615

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 616 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 660

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+FFRSY D E KRIG +  EQFEKP R     +++  YDKLDDDG++APG+RVSG+D++
Sbjct: 661 SLFFRSYTDQE-KRIGMNVVEQFEKPFRNDTLKLKHGTYDKLDDDGLVAPGVRVSGEDII 719

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK  SKRD ST LR++E GIVDQV++T N +G +F K+R+R+ 
Sbjct: 720 IGKTAPIAPDNEELGQRTKAHSKRDASTPLRSTENGIVDQVLITTNAEGLRFVKVRMRTT 779

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           ++PQIGDKFASRHGQKGT GI Y+QE                                  
Sbjct: 780 KVPQIGDKFASRHGQKGTIGITYKQEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQL 839

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             V+S  G  GDATPF D V V  +S LL+E+GYQ RG E+M++GHTGRK+ AQVFLGPT
Sbjct: 840 SKVASLSGYEGDATPFTD-VTVDNVSKLLREHGYQSRGFEIMYHGHTGRKLTAQVFLGPT 898

Query: 324 YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRF 363
           YYQRL+HMVDDKIH+RARGPVQIL RQP+EGRARDGGLRF
Sbjct: 899 YYQRLRHMVDDKIHARARGPVQILTRQPVEGRARDGGLRF 938


>gi|410610277|gb|AFV74907.1| RNA polymerase II second largest subunit, partial [Olax imbricata]
          Length = 568

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/398 (54%), Positives = 258/398 (64%), Gaps = 84/398 (21%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+  RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 219 MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA----------------------------- 249

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 250 ----------------MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 293

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY+D E K     +E F +PNR    GMR+  YDKLDDDG+  PG RVSG+DV+I
Sbjct: 294 SLFFRSYRDEEKKMGTLVKEDFGRPNRTDTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 353

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GK  T P  +DE +G T R+S+RD ST LR+SETGIVDQV+LT N DG +F K+RVRSVR
Sbjct: 354 GK--TSPMAQDESQGQTARYSRRDHSTSLRHSETGIVDQVLLTTNADGLRFVKVRVRSVR 411

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 412 IPQIGDKFSSRHGQKGTIGMTYTQEDMPWTIEGITPDIIVNPHAIPSRMTIGQLIECIMG 471

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGR++ A +FLGPTY
Sbjct: 472 KVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTY 530

Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLR 362
           YQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGGLR
Sbjct: 531 YQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLR 568


>gi|6606131|gb|AAF19078.1|AF107806_1 DNA-dependent RNA polymerase II RPB140, partial [Microglossum
           viride]
          Length = 938

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 217/400 (54%), Positives = 264/400 (66%), Gaps = 84/400 (21%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TNF  RMDT+A++LYYP KPL TTR                              
Sbjct: 586 MGVFLTNFDQRMDTMANILYYPQKPLATTR------------------------------ 615

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 616 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 660

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+FFRSY D E KRIG +  EQFEKP R     +++  YDKLDDDG++APG+RVSG+D++
Sbjct: 661 SLFFRSYTDQE-KRIGMNVVEQFEKPFRNDTLKLKHGTYDKLDDDGLVAPGVRVSGEDII 719

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK  SKRD ST LR++E GIVDQV++T N +G +F K+R+R+ 
Sbjct: 720 IGKTAPIAPDNEELGQRTKAHSKRDASTPLRSTENGIVDQVLITTNAEGLRFVKVRMRTT 779

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 780 KIPQIGDKFASRHGQKGTIGIIYRQEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQL 839

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             V+S  G  GDATPF D V V  +S LL+E+GYQ RG E+M++GHTGRK+ AQVFLGPT
Sbjct: 840 SKVASLSGYEGDATPFTD-VTVDNVSKLLREHGYQSRGFEIMYHGHTGRKLVAQVFLGPT 898

Query: 324 YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRF 363
           YYQRL+HMVDDKIH+RARGPVQIL RQP+EGRARDGGLRF
Sbjct: 899 YYQRLRHMVDDKIHARARGPVQILTRQPVEGRARDGGLRF 938


>gi|410610271|gb|AFV74904.1| RNA polymerase II second largest subunit, partial [Viscum
           alniformosanae]
          Length = 569

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/399 (53%), Positives = 259/399 (64%), Gaps = 84/399 (21%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+  RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 219 MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA----------------------------- 249

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDS+I+N S+V+RG+FR
Sbjct: 250 ----------------MEHLHFRQLPAGINAIVAIACYSGYNQEDSIIMNQSSVDRGFFR 293

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY+D E K     +E F +PNR    GMR+  YDKLDDDG+  PG RVSG+DV+I
Sbjct: 294 SLFFRSYRDEEKKMGTLIKEDFGRPNRMDTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 353

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GK  T P  +DE +G + R++KRD ST LR+SETGIVDQV+LT N DG +F K+RVRSVR
Sbjct: 354 GK--TSPIAQDESQGQSFRYTKRDHSTSLRHSETGIVDQVLLTTNADGLRFVKVRVRSVR 411

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 412 IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMG 471

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGR++ A +FLGPTY
Sbjct: 472 KVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTY 530

Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRF 363
           YQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGGLRF
Sbjct: 531 YQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 569


>gi|83415485|gb|ABC17950.1| RNA polymerase II second largest subunit, partial [Rhopalomyces
           elegans]
          Length = 723

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 215/399 (53%), Positives = 257/399 (64%), Gaps = 82/399 (20%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGVY+TN+ +RMDTLA+++YYP KPLVTTR+                             
Sbjct: 371 MGVYLTNYQLRMDTLANIIYYPQKPLVTTRA----------------------------- 401

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           MEYL+FR+LPAG N+ VAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 402 ----------------MEYLKFRDLPAGQNATVAILCYSGYNQEDSVIMNQSSIDRGLFR 445

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+F+R Y D E K      E+FEKP R     M++  YDKL+DDG+IAPG+RVSG+D++I
Sbjct: 446 SLFYRCYMDQEKKAGVKVMEEFEKPTRDATLRMKHGTYDKLEDDGLIAPGVRVSGEDIII 505

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  LPE   EL   T+  ++RD ST LR++ETGIVDQVMLT N +G KF K+RVRS R
Sbjct: 506 GKTAPLPEESAELGQRTRSHTRRDISTPLRSTETGIVDQVMLTTNQEGVKFVKVRVRSTR 565

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQ+GDKFASRHGQKGT GI YRQE                                   
Sbjct: 566 IPQMGDKFASRHGQKGTIGITYRQEDMPFSADGIVPDLIINPHAIPSRMTIGHMVECLLS 625

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            VS+  G  GDATPF D V V  IS  L  +G+  RG EV++NGHTGRK+ AQVFLGPTY
Sbjct: 626 KVSTLTGSEGDATPFTD-VTVDAISKALAVHGFHQRGFEVIYNGHTGRKLTAQVFLGPTY 684

Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRF 363
           YQRLKHMVDDKIHSRARGPVQIL RQP+EGR+RDGGLRF
Sbjct: 685 YQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRF 723


>gi|83415473|gb|ABC17944.1| RNA polymerase II second largest subunit, partial [Conidiobolus
           coronatus]
          Length = 727

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 215/400 (53%), Positives = 266/400 (66%), Gaps = 85/400 (21%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y++N+ +RMDTLA++LYYP KPLV TR                              
Sbjct: 376 MGIYLSNYQLRMDTLANILYYPQKPLVATR------------------------------ 405

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYLRFRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 406 ---------------SMEYLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 450

Query: 121 SVFFRSYKDAESKRIGDQE-EQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+R+Y D E K++G ++ E FEKP R++   +++  Y+KL+DDG+IAPG+RVSGDD++
Sbjct: 451 SMFYRTYMDQE-KQVGSKKLEIFEKPTRESTLRLKHGTYEKLEDDGLIAPGIRVSGDDII 509

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT+ +P++++EL G     +KRD ST LR++ETGIVDQVMLT N DG KF K+RVRS 
Sbjct: 510 IGKTVPIPDDDEEL-GQRTNHTKRDASTPLRSTETGIVDQVMLTTNNDGLKFVKVRVRST 568

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           R+PQ+GDKFASRHGQKGT G+ YRQE                                  
Sbjct: 569 RVPQMGDKFASRHGQKGTIGVTYRQEDMPFTADGLTPDLIINPHAIPSRMTIGHLVECLL 628

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             V +  G  GDATPF D V V  IS  L+  GYQ RG EVM+NGHTGRK+ AQV+ GPT
Sbjct: 629 GKVGTMLGAEGDATPFTD-VTVDSISKQLELRGYQKRGFEVMYNGHTGRKLTAQVYFGPT 687

Query: 324 YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRF 363
           YYQRLKHMVDDKIHSRARGPVQIL RQP+EGR+RDGGLRF
Sbjct: 688 YYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRF 727


>gi|410610287|gb|AFV74912.1| RNA polymerase II second largest subunit, partial [Schoepfia
           jasminodora]
          Length = 569

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 213/399 (53%), Positives = 258/399 (64%), Gaps = 84/399 (21%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+  RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 219 MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA----------------------------- 249

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IV+I CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 250 ----------------MEHLHFRQLPAGINAIVSIACYSGYNQEDSVIMNQSSIDRGFFR 293

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY+D E K     +E F +PNR    GMR+  YDKLDDDG+  PG RVSG+DV+I
Sbjct: 294 SLFFRSYRDEEKKMGTLVKEDFGRPNRMDTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 353

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GK  T P  +DE +G   R++KRD ST LR+SETG+VDQV+LT N DG +F K+RVRSVR
Sbjct: 354 GK--TSPIAQDESQGQATRYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVR 411

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 412 IPQIGDKFSSRHGQKGTIGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMG 471

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGR++ A +FLGPTY
Sbjct: 472 KVAAHVGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTY 530

Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRF 363
           YQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGGLRF
Sbjct: 531 YQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 569


>gi|6606117|gb|AAF19071.1|AF107799_1 DNA-dependent RNA polymerase II RPB140 [Aureobasidium pullulans]
          Length = 936

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 217/400 (54%), Positives = 264/400 (66%), Gaps = 84/400 (21%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+ +TN++VRMDT+A+VLYYP KPL TTR                              
Sbjct: 584 MGITLTNYNVRMDTMANVLYYPQKPLGTTR------------------------------ 613

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 614 ---------------SMEYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 658

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+R+Y D E KR+G    EQFEKP R     M++  YDKLDDDGIIAPG RVSG+D++
Sbjct: 659 SLFYRAYMDQE-KRVGMSVVEQFEKPTRGDTMRMKHGTYDKLDDDGIIAPGTRVSGEDII 717

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK   KRD ST LR++E+G++DQV+LT NV+G KF K+R R+ 
Sbjct: 718 IGKTAPMAPDAEELGQRTKFHIKRDVSTPLRSTESGLIDQVLLTTNVEGLKFVKVRTRTT 777

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 778 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTADGLVPDIIINPHAIPSRMTIAHLIECLL 837

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             V S +G+ GDATPF D V V +IS LL+++G+Q RG EVM+NGHTGRK+NAQVFLGPT
Sbjct: 838 SKVGSLRGQEGDATPFTD-VTVTQISDLLRQHGFQQRGFEVMYNGHTGRKMNAQVFLGPT 896

Query: 324 YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRF 363
           YYQRL+HMVDDKIH+RARGP QIL RQP+EGRARDGGLRF
Sbjct: 897 YYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRF 936


>gi|45545301|gb|AAS67498.1| DNA-dependent RNA polymerase II second largest subunit, partial
           [Amanita phalloides]
          Length = 917

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 208/399 (52%), Positives = 262/399 (65%), Gaps = 82/399 (20%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF +RMDT+A++LYYP KPL TTR                              
Sbjct: 565 MGIYLTNFLIRMDTMANILYYPQKPLATTR------------------------------ 594

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 595 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 639

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP R T   M++  YDKL+DDG+IAPG  V+G+D++I
Sbjct: 640 SIYYRSYMDLEKKSGVQQLEEFEKPTRDTTLRMKHGTYDKLEDDGLIAPGTNVTGEDIII 699

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E+GIVDQV++T N +G KF K+RVR+ R
Sbjct: 700 GKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRATR 759

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 760 IPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDLIINPHAIPSRMTIGHLVECLLS 819

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D + V+ +ST L++ GY  RG EVM++GHTGRK+ AQ++LGPTY
Sbjct: 820 KVATLIGNEGDATPFTD-LTVESVSTFLRQKGYHSRGLEVMYHGHTGRKLQAQIYLGPTY 878

Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRF 363
           YQRLKHMVDDKIHSRARGPVQIL RQP+EGR+RDGGLRF
Sbjct: 879 YQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRF 917


>gi|46277283|gb|AAS86832.1| RNA polymerase II second largest subunit, partial [Rhododendron
           macrophyllum]
          Length = 580

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 212/404 (52%), Positives = 261/404 (64%), Gaps = 84/404 (20%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+ +RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 225 MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA----------------------------- 255

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 256 ----------------MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 299

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+F+RSY+D E K     +E F  PNR+   GMR+  YDKLDDDG   PG RV+G+DV+I
Sbjct: 300 SIFYRSYRDEEKKMGTLVKEDFGCPNRENTMGMRHGSYDKLDDDGFAPPGTRVAGEDVII 359

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT   P   D+ +G T R+++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RS+R
Sbjct: 360 GKTT--PIAPDDAQGQTARYTRRDHSTCLRHSESGMVDQVLLTTNADGLRFVKMRMRSIR 417

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 418 IPQIGDKFSSRHGQKGTIGMAYTQEDMPWTIEGICPDIIVNPHAIPSRMTIGQLIECIMG 477

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGR +   +FLGPTY
Sbjct: 478 KVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFERMYNGHTGRPLTYTIFLGPTY 536

Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMER 368
           YQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGGLRFGEMER
Sbjct: 537 YQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMER 580


>gi|40388703|gb|AAR85529.1| RNA polymerase II [Botryotinia fuckeliana]
          Length = 952

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 212/406 (52%), Positives = 267/406 (65%), Gaps = 84/406 (20%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TNF VRMDT+A++LYYP KPL TTR                              
Sbjct: 594 MGVFLTNFDVRMDTMANILYYPQKPLATTR------------------------------ 623

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI+CY+GYNQEDSVI+N S+++RG FR
Sbjct: 624 ---------------SMEFLKFRELPAGQNAIVAIMCYSGYNQEDSVIMNQSSIDRGLFR 668

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+R+Y D E KRIG +  EQFEKP R     ++   YDKLDDDGI+APG+RV+G D++
Sbjct: 669 SLFYRAYTDQE-KRIGMNVVEQFEKPYRSDTLKLKQGTYDKLDDDGIVAPGVRVTGADII 727

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +E+   TK   KRD ST LR++E+G+VDQV++T N +G +F K+R+R+ 
Sbjct: 728 IGKTAPIAPDSEEMGQRTKAHVKRDASTPLRSTESGLVDQVLITTNAEGLRFVKVRMRTT 787

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI Y Q+                                  
Sbjct: 788 KIPQIGDKFASRHGQKGTIGITYMQQDMPFTREGVVPDLIINPHAIPSRMTIAHLIECQL 847

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VS+ +G  GDATPF + V V  +S LL+ +GY  RG E+M++GHTGRK+ AQVFLGPT
Sbjct: 848 SKVSTLRGLEGDATPFTE-VTVDSVSKLLRAHGYHSRGFEIMYHGHTGRKMMAQVFLGPT 906

Query: 324 YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERD 369
           YYQRL+HMVDDKIH+RARGPVQIL RQP+EGRARDGGLRFGEMERD
Sbjct: 907 YYQRLRHMVDDKIHARARGPVQILTRQPVEGRARDGGLRFGEMERD 952


>gi|6606139|gb|AAF19082.1|AF107810_1 DNA-dependent RNA polymerase II RPB140 [Morchella elata]
          Length = 927

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 217/400 (54%), Positives = 264/400 (66%), Gaps = 84/400 (21%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TNF  RMDT+A++LYYP KPL TTR                              
Sbjct: 575 MGVFLTNFAERMDTMANILYYPQKPLATTR------------------------------ 604

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 605 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 649

Query: 121 SVFFRSYKDAESKRIGDQ-EEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+RSY D E KRIG Q  E+FEKP R     +++  YDKLD+DG++APG+RVSG+D++
Sbjct: 650 SLFYRSYMDQE-KRIGMQVVEEFEKPTRANTLKLKHGTYDKLDEDGLVAPGVRVSGEDII 708

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + DE+    K  +KRD ST LR++E GIVDQVMLT N +G KF K+R+R+ 
Sbjct: 709 IGKTAPIAPDVDEMGQRQKFHTKRDVSTPLRSTENGIVDQVMLTTNAEGLKFVKVRMRTT 768

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 769 KIPQIGDKFASRHGQKGTVGITYRQEDMPFTCEGIVPDLIINPHAIPSRMTIAHLIECQL 828

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF D V V+ +STLL++ GYQ RG EVM+NG+TGRK+  QVFLGPT
Sbjct: 829 SKVSSLRGFEGDATPFTD-VTVESVSTLLRQNGYQSRGFEVMYNGYTGRKLVCQVFLGPT 887

Query: 324 YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRF 363
           YYQRL+HMVDDKIH+RARGPVQIL RQP+EGRARDGGLRF
Sbjct: 888 YYQRLRHMVDDKIHARARGPVQILTRQPVEGRARDGGLRF 927


>gi|45545343|gb|AAS67519.1| DNA-dependent RNA polymerase II second largest subunit, partial
           [Phragmidium sp. MB]
          Length = 931

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 211/399 (52%), Positives = 258/399 (64%), Gaps = 82/399 (20%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGVY+TNF +RMDT+A++LYYP KPL TTR                              
Sbjct: 579 MGVYLTNFRMRMDTMANILYYPQKPLATTR------------------------------ 608

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYLRFRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 609 ---------------SMEYLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 653

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S ++RSY D E K      E+FEKP+R+T   ++   YDKLD+DGII PG RVSGDD++I
Sbjct: 654 SFYYRSYMDQEKKAGALSMEEFEKPSRETTLRLKQGTYDKLDEDGIINPGTRVSGDDIII 713

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT ++PE  +E+    K  +KRD S  L+++E GI+DQV++T N D  KF K+R+RS R
Sbjct: 714 GKTASIPEGSEEMGQRDKSHTKRDVSMPLKSTENGIIDQVLITTNSDNLKFVKVRIRSTR 773

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IP+ GDKFASRHGQKGT GI YRQE                                   
Sbjct: 774 IPETGDKFASRHGQKGTVGILYRQEDMPFTSEGVCPDIIINPHAIPSRMTIGHLVECLLS 833

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            VS+  G  GDATPF++ V V+ IS+LL+E GY  RG E+MFNGHTGRK+ AQ +LGPTY
Sbjct: 834 KVSTITGNEGDATPFSE-VTVEAISSLLKENGYHSRGLEIMFNGHTGRKLRAQCYLGPTY 892

Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRF 363
           YQRLKHMV+DKIHSRARGPVQIL RQP+EGR+RDGGLRF
Sbjct: 893 YQRLKHMVNDKIHSRARGPVQILTRQPVEGRSRDGGLRF 931


>gi|67810699|gb|AAY82002.1| RNA polymerase II second largest subunit [Selaginella erythropus]
          Length = 581

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 209/398 (52%), Positives = 259/398 (65%), Gaps = 84/398 (21%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+++TN+ +RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 231 MGIHVTNYQLRMDTLAYVLYYPQKPLVTTRA----------------------------- 261

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 262 ----------------MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 305

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+F+RSY+D E K     +E+FE+PNR+T  GMR+  YDKLDDDGI  PG RVSG+DV+I
Sbjct: 306 SIFYRSYRDEEKKAGTLVKEEFERPNRETTTGMRHGSYDKLDDDGIAPPGTRVSGEDVII 365

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT   P  +DE     +R++KRD ST LR+SE+G++DQV+LT N DG +F K RVRS+R
Sbjct: 366 GKTT--PVTQDETSTQAQRYTKRDQSTCLRHSESGMIDQVLLTTNADGLRFVKTRVRSIR 423

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 424 IPQIGDKFSSRHGQKGTIGMTYTQEDMPFTQEGITPDIIVNPHAIPSRMTIGQLIECIMG 483

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGR++NA +F+GPTY
Sbjct: 484 KVAALMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLNAMIFIGPTY 542

Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLR 362
           YQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGG R
Sbjct: 543 YQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGXR 580


>gi|6606137|gb|AAF19081.1|AF107809_1 DNA-dependent RNA polymerase II RPB140, partial [Peziza
           quelepidotia]
          Length = 927

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 216/400 (54%), Positives = 264/400 (66%), Gaps = 84/400 (21%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 575 MGVFLTNYRERMDTMANILYYPQKPLGTTR------------------------------ 604

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 605 ---------------SMEFLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 649

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+FFR+Y D E KRIG    E+FEKP R     +++  YDKLDDDG++APG+RVSG+D++
Sbjct: 650 SLFFRTYMDQE-KRIGMSVVEEFEKPTRGNTLRLKHGTYDKLDDDGLVAPGVRVSGEDII 708

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  N++EL   TK  +KRD ST LR++E GIVDQVM+T N +G KF K+R+R+ 
Sbjct: 709 IGKTAPIAPNQEELGQRTKFHTKRDVSTPLRSTENGIVDQVMVTTNQEGLKFVKVRMRTT 768

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YR E                                  
Sbjct: 769 KIPQIGDKFASRHGQKGTIGITYRNEDMPFTSEGIVPDLIINPHAIPSRMTIAHLIECQL 828

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF D V V  +S LL+E+GYQ RG E+M+NGHTGRK+ AQVFLGPT
Sbjct: 829 SKVSSLRGFEGDATPFTD-VTVDSVSKLLREHGYQSRGFEIMYNGHTGRKLVAQVFLGPT 887

Query: 324 YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRF 363
           YYQRL+HMVDDKIH+RARGPVQIL RQP+EGRARDGGLRF
Sbjct: 888 YYQRLRHMVDDKIHARARGPVQILTRQPVEGRARDGGLRF 927


>gi|6606129|gb|AAF19077.1|AF107805_1 DNA-dependent RNA polymerase II RPB140 [Preussia minima]
          Length = 937

 Score =  410 bits (1053), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 213/400 (53%), Positives = 260/400 (65%), Gaps = 84/400 (21%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV +TN+ +RM+T+ +VLYYP KPL TTR                              
Sbjct: 585 MGVALTNYALRMETMMNVLYYPQKPLATTR------------------------------ 614

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYLRFRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 615 ---------------SMEYLRFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 659

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+R+Y + E KRIG +  EQFEKP RQ    ++   YDKLDDDG++APG+RVSGDD++
Sbjct: 660 SLFYRAYTEQE-KRIGVNVLEQFEKPTRQDTLRLKGGTYDKLDDDGVVAPGVRVSGDDII 718

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +P +  EL   T+  +KRD ST LR++E GIVDQV+ T N +G +F K+R R+ 
Sbjct: 719 IGKTAPIPGDAQELGQKTQNHTKRDVSTPLRSTENGIVDQVLFTTNTEGLRFVKVRTRTT 778

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           ++PQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 779 KVPQIGDKFASRHGQKGTIGITYRQEDMPFTREGLTPDLIINPHAIPSRMTIAHLVECLL 838

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             V S KG  GDATPF D V V+ +S LL E+GYQ RG EVM+NGHTG+K+ AQVFLGPT
Sbjct: 839 SKVGSLKGAEGDATPFTD-VTVESVSKLLVEHGYQQRGFEVMYNGHTGKKLRAQVFLGPT 897

Query: 324 YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRF 363
           YYQRL+HMVDDKIH+RARGP+QIL RQP+EGRARDGGLRF
Sbjct: 898 YYQRLRHMVDDKIHARARGPLQILTRQPVEGRARDGGLRF 937


>gi|55584698|gb|AAV53580.1| RNA polymerase II second largest subunit [Rhodocollybia maculata]
          Length = 721

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 210/399 (52%), Positives = 261/399 (65%), Gaps = 82/399 (20%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+++TNF +RMDT+A++LYYP KPL TTR                              
Sbjct: 369 MGIFLTNFLIRMDTMANILYYPQKPLATTR------------------------------ 398

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+G+NQEDSVI+N S+++RG FR
Sbjct: 399 ---------------SMEYLKFRELPAGQNAIVAILCYSGHNQEDSVIMNQSSIDRGLFR 443

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP R     M++  YDKL+DDG+IAPG  V G+D++I
Sbjct: 444 SIYYRSYMDLEKKSGVQQLEEFEKPTRDNTLRMKHGTYDKLEDDGLIAPGTGVLGEDIII 503

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E+GIVDQV++T N +G KF KIRVRS R
Sbjct: 504 GKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTESGIVDQVLITTNSEGRKFVKIRVRSTR 563

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 564 IPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLS 623

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D + V+ +ST L++ GYQ RG EVMF+GHTGRK+ AQV+LGPTY
Sbjct: 624 KVATLIGNEGDATPFTD-LTVESVSTFLRDRGYQSRGLEVMFHGHTGRKLQAQVYLGPTY 682

Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRF 363
           YQRLKHMVDDKIHSRARGPVQIL RQP+EGR+RDGGLRF
Sbjct: 683 YQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRF 721


>gi|46277271|gb|AAS86826.1| RNA polymerase II second largest subunit, partial [Antirrhinum
           majus]
          Length = 575

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 210/399 (52%), Positives = 258/399 (64%), Gaps = 84/399 (21%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+  RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 225 MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA----------------------------- 255

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 256 ----------------MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 299

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY+D E K     +E F +P+R    GMR+  YDKLDDDG+  PG R SG+DV+I
Sbjct: 300 SLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRCSGEDVII 359

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT   P + D+ +G   R++KRD ST LR+SETG+VDQV+LT N DG +F K+RVRSVR
Sbjct: 360 GKTT--PISPDDAQGQAARYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVR 417

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 418 IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGISPDIIVNPHAIPSRMTIGQLIECIMG 477

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGR++++ +FLGPTY
Sbjct: 478 KVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLSSMIFLGPTY 536

Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRF 363
           YQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGGLRF
Sbjct: 537 YQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 575


>gi|46277261|gb|AAS86821.1| RNA polymerase II second largest subunit, partial [Akebia
           longeracemosa]
          Length = 575

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 210/399 (52%), Positives = 259/399 (64%), Gaps = 84/399 (21%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+ +RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 225 MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA----------------------------- 255

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 256 ----------------MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 299

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+ FRSY+D E K     +E F +PNR    GMR+  YDKLDDDG+  PG+RVSG+DV+I
Sbjct: 300 SLSFRSYRDEEKKMGTLVKEDFGRPNRDNTMGMRHGSYDKLDDDGLAPPGIRVSGEDVII 359

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT   P  ++E +G   R+++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVR
Sbjct: 360 GKTT--PIAQEESQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVR 417

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 418 IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMG 477

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGRK+ A +FLGPTY
Sbjct: 478 KVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRKLTAMIFLGPTY 536

Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRF 363
           YQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGGLRF
Sbjct: 537 YQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 575


>gi|410610275|gb|AFV74906.1| RNA polymerase II second largest subunit, partial [Thesium
           chinense]
          Length = 566

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 212/396 (53%), Positives = 257/396 (64%), Gaps = 84/396 (21%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+  RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 219 MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA----------------------------- 249

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 250 ----------------MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 293

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY+D E K     +E F +PNR    GMR+  YDKLDDDG+  PG RVSG+DV+I
Sbjct: 294 SLFFRSYRDEEKKMGTLVKEDFGRPNRMDTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 353

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GK  T P  +DE +G + R++KRD ST LR+SETGIVDQV+LT N DG +F K+RVRSVR
Sbjct: 354 GK--TSPIAQDESQGQSSRYTKRDHSTSLRHSETGIVDQVLLTTNADGLRFVKVRVRSVR 411

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 412 IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMG 471

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGR+++A +FLGPTY
Sbjct: 472 KVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTY 530

Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGG 360
           YQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGG
Sbjct: 531 YQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGG 566


>gi|351518439|gb|AEQ39960.1| RNA polymerase II second largest subunit [Lecophagus sp. ATCC
           56071]
          Length = 731

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 213/400 (53%), Positives = 265/400 (66%), Gaps = 84/400 (21%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TNF+ RMDT+A++LYYP KPL TTR                              
Sbjct: 379 MGVFLTNFNERMDTMANILYYPQKPLATTR------------------------------ 408

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IV I+CY+GYNQEDSVI+N S+++RG FR
Sbjct: 409 ---------------SMEFLKFRELPAGQNAIVGIMCYSGYNQEDSVIMNQSSIDRGLFR 453

Query: 121 SVFFRSYKDAESKRIGDQ-EEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+FFRSY + E+ RIG Q  E FEKP R     +++  YDKLDDDG+IAPG+RVSG D++
Sbjct: 454 SLFFRSYMNFET-RIGMQVVEAFEKPTRSNTLRLKHGTYDKLDDDGLIAPGVRVSGGDII 512

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +P++ +EL   TK  ++RD ST LR++E GIVDQV+LT N +G KF K+R+R+ 
Sbjct: 513 IGKTAPMPQDSEELGQRTKFHTRRDVSTPLRSTENGIVDQVLLTTNAEGVKFVKVRMRTT 572

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           ++PQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 573 KVPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDLIINPHAIPSRMTIAHLIECQL 632

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + V V+ +S LL+E+GYQ RG EVM+NGHTGRK+  QVFLGPT
Sbjct: 633 SKVSSLRGFEGDATPFTE-VTVENVSKLLREHGYQSRGFEVMYNGHTGRKLIIQVFLGPT 691

Query: 324 YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRF 363
           YYQRL+HMVDDKIH+RARGP+QIL RQP+EGRARDGGLRF
Sbjct: 692 YYQRLRHMVDDKIHARARGPIQILTRQPVEGRARDGGLRF 731


>gi|40645025|emb|CAD92461.1| RNA polymerase II [Valeriana officinalis]
          Length = 364

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 211/399 (52%), Positives = 257/399 (64%), Gaps = 84/399 (21%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF  RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 14  MGIYVTNFQFRMDTLAYVLYYPQKPLVTTRA----------------------------- 44

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 45  ----------------MEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFR 88

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY+D E K     +E F +P+R    GMR+  YDKLDDDG+   G RVSG+DV+I
Sbjct: 89  SLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPAGTRVSGEDVII 148

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT   P  +D+ +G   R+++RD ST LR+SETG+VDQV+LT N DG +F K+RVRSVR
Sbjct: 149 GKTT--PIAQDDAQGQASRYTRRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVR 206

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 207 IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMG 266

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGR++ A +FLGPTY
Sbjct: 267 KVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTY 325

Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRF 363
           YQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGGLRF
Sbjct: 326 YQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 364


>gi|83415475|gb|ABC17945.1| RNA polymerase II second largest subunit, partial [Scutellospora
           heterogama]
          Length = 761

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 211/399 (52%), Positives = 259/399 (64%), Gaps = 82/399 (20%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+ +RMDTLA++LYYP KPLVTTR+                             
Sbjct: 409 MGIYVTNYQLRMDTLANILYYPQKPLVTTRA----------------------------- 439

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+LRFRELPAG N+IVAILCY+GYNQE+SVI+N S+++RG FR
Sbjct: 440 ----------------MEFLRFRELPAGQNAIVAILCYSGYNQENSVIMNQSSIDRGLFR 483

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+F+RSY D E K      E+F+KP R+T   +++  Y+KL++DG+IAPG RVSGDD++I
Sbjct: 484 SIFYRSYMDQEKKVGILSIEEFDKPTRETTLRLKHGTYEKLEEDGLIAPGTRVSGDDIII 543

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GK   +PE+  EL       + RD ST +R++E GIVDQVM+T N +G KF K+RVRS R
Sbjct: 544 GKVTPIPEHTIELGQRKNTHTHRDASTPMRSTENGIVDQVMVTTNAEGMKFVKVRVRSTR 603

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQ+GDKFASRHGQKGT GI YRQE                                   
Sbjct: 604 IPQMGDKFASRHGQKGTIGITYRQEDMPFTSEGITPDLIINPHAIPSRMTIGHLVECLLG 663

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            VS+  G+ GDATPF D V V+ IS  L++ GY  RG EVM+NGHTGRK+ AQVFLGPTY
Sbjct: 664 KVSTLTGQEGDATPFTD-VTVEAISHSLRQNGYHSRGFEVMYNGHTGRKLAAQVFLGPTY 722

Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRF 363
           YQRLKHMVDDKIHSRARGPVQIL RQP+EGR+RDGGLRF
Sbjct: 723 YQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRF 761


>gi|6606089|gb|AAF19057.1|AF107785_1 DNA-dependent RNA polymerase II RPB140 [Agaricus bisporus]
          Length = 914

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 208/399 (52%), Positives = 260/399 (65%), Gaps = 82/399 (20%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF +RMDT+A++LYYP KPL TTR                              
Sbjct: 562 MGIYLTNFLIRMDTMANILYYPQKPLATTR------------------------------ 591

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 592 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 636

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP R T   M++  YDKL+DDG+IAPG  V G+D++I
Sbjct: 637 SIYYRSYMDLEKKSGIQQLEEFEKPTRDTTLRMKHGTYDKLEDDGLIAPGTGVRGEDIII 696

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E GIVDQV++T N +G KF K+RVR+ R
Sbjct: 697 GKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTEIGIVDQVLITTNSEGQKFVKVRVRATR 756

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFAS HGQKGT GI YRQE                                   
Sbjct: 757 IPQIGDKFASCHGQKGTVGITYRQEDMPFTAEGIVPDLIINPHAIPSRMTIGHLVECLLS 816

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D + V+ +ST L++ GYQ RG EVM++GHTGRK+ AQ++LGPTY
Sbjct: 817 KVATLIGNEGDATPFTD-LTVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQAQIYLGPTY 875

Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRF 363
           YQRLKHMVDDKIHSRARGPVQIL RQP+EGR+RDGGLRF
Sbjct: 876 YQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRF 914


>gi|83415503|gb|ABC17959.1| RNA polymerase II second largest subunit, partial [Rhizophagus
           intraradices]
          Length = 764

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 211/399 (52%), Positives = 257/399 (64%), Gaps = 82/399 (20%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN  +RMDTLA++LYYP KP+VTTR+                             
Sbjct: 412 MGIYVTNHQLRMDTLANILYYPQKPVVTTRA----------------------------- 442

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+LRFRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 443 ----------------MEFLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 486

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+F+RSY D E K      E+FEKP ++T   +++  Y+KL+DDG+IAPG RVSGDD++I
Sbjct: 487 SIFYRSYMDQEKKVGMLTIEEFEKPTKETTLRLKHGTYEKLEDDGLIAPGTRVSGDDIII 546

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GK   +     EL       ++RD ST +R++ETGIVDQVM+T N +G KF K+RVRS R
Sbjct: 547 GKVTPISNETLELGQRQTTHTQRDASTPMRSTETGIVDQVMVTTNAEGMKFVKVRVRSTR 606

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           +PQ+GDKFASRHGQKGT GI YRQE                                   
Sbjct: 607 VPQMGDKFASRHGQKGTIGITYRQEDMPFTAEGIAPDLVINPHAIPSRMTIGHLVECLLG 666

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            VS+  G+ GDATPF D V V+ IS  L+  GYQ RG EVM+NGHTGRK+ AQVFLGPTY
Sbjct: 667 KVSTLTGQEGDATPFTD-VTVEAISQSLRLQGYQSRGFEVMYNGHTGRKLAAQVFLGPTY 725

Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRF 363
           YQRLKHMVDDKIHSRARGPVQIL RQP+EGR+RDGGLRF
Sbjct: 726 YQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRF 764


>gi|112382383|gb|ABI17423.1| RNA polymerase II second largest subunit, partial [Sympodiomycopsis
           paphiopedili]
          Length = 746

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 205/400 (51%), Positives = 263/400 (65%), Gaps = 82/400 (20%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGVY+TN+ +RMDT+A++LYYP KPL TTR+                             
Sbjct: 393 MGVYLTNYQMRMDTMANILYYPQKPLATTRA----------------------------- 423

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 424 ----------------MEHLNFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 467

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++R+Y D E K     +E+FEKP R+    +++  YDK+D DG++APG RVSG+D++I
Sbjct: 468 SLYYRTYTDFEKKVGFTLQEEFEKPTREXSIRLKHGTYDKIDADGLVAPGTRVSGEDIII 527

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  LP + +EL   +K  +KRD ST L+++E+GIVDQV+++ N +G KF K+RVRS R
Sbjct: 528 GKTAPLPPDSEELGLRSKTHTKRDVSTPLKSTESGIVDQVLVSTNQEGSKFVKVRVRSTR 587

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           +PQ GDKFASRHGQKGT GI YRQE                                   
Sbjct: 588 VPQTGDKFASRHGQKGTIGITYRQEDMPFTIEGVTPDIIINPHAIPSRMTIGHLVECLLS 647

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G+ GDATPF D + V+ +S++L + GYQ RG EVM+NGHTGRK+ AQV+LGPTY
Sbjct: 648 KVATLSGQEGDATPFTD-LTVEAVSSILAKLGYQKRGLEVMYNGHTGRKLQAQVYLGPTY 706

Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFG 364
           YQRLKHMVDDKIHSRARGPVQIL RQP+EGR+RDGGLRFG
Sbjct: 707 YQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFG 746


>gi|6606123|gb|AAF19074.1|AF107802_1 DNA-dependent RNA polymerase II RPB140 [Lasiodiplodia theobromae]
          Length = 942

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 211/399 (52%), Positives = 256/399 (64%), Gaps = 82/399 (20%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV +TN+ +RMDT+ +VLYYP KPL TTR                              
Sbjct: 590 MGVCLTNYELRMDTMVNVLYYPQKPLATTR------------------------------ 619

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYLRFRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 620 ---------------SMEYLRFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 664

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+F+RSY D E K      EQFEKP R     +++  YDKLDDDG++APG+RVSG+D++I
Sbjct: 665 SLFYRSYTDQEKKVGMAVVEQFEKPMRSDTMRLKHGTYDKLDDDGVVAPGVRVSGEDIII 724

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +  + +EL   TK   KRD ST LR++E GIVD V+LT N DG KF K+R R+ +
Sbjct: 725 GKTAPIAPDAEELGQRTKMHIKRDVSTPLRSTENGIVDSVLLTTNSDGLKFVKVRTRTTK 784

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YR E                                   
Sbjct: 785 IPQIGDKFASRHGQKGTIGITYRHEDMPFTREGLTPDLIINPHAIPSRMTIAHLIECLLS 844

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V + +G  GDATPF D V V ++S+LL+E+GYQ RG E+M+NGHTG+K+ AQVFLGPTY
Sbjct: 845 KVGALRGXEGDATPFTD-VTVXQVSSLLREHGYQSRGFEIMYNGHTGKKLTAQVFLGPTY 903

Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRF 363
           YQRL+HMVDDKIH+RARGPVQIL RQP+EGRARDGGLRF
Sbjct: 904 YQRLRHMVDDKIHARARGPVQILTRQPVEGRARDGGLRF 942


>gi|46277253|gb|AAS86817.1| RNA polymerase II second largest subunit, partial [Sequoia
           sempervirens]
          Length = 556

 Score =  407 bits (1045), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 209/398 (52%), Positives = 259/398 (65%), Gaps = 84/398 (21%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+ +RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 207 MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA----------------------------- 237

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 238 ----------------MEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFR 281

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY+D E +     +E+F +PNR+   GMR+  YDKLDDDG+  PG RVSG+DV+I
Sbjct: 282 SLFFRSYRDEEKRAGTLVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 341

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT   P  +D+  G   ++ KRD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVR
Sbjct: 342 GKTT--PIAQDDSAGQVSKYPKRDQSTSLRHSESGMVDQVLLTTNQDGLRFVKVRMRSVR 399

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 400 IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMG 459

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGRK++A +FLGPTY
Sbjct: 460 KVAAHMGKEGDATPFTD-VTVDSISKALHKCGYQMRGFETMYNGHTGRKLSAMIFLGPTY 518

Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLR 362
           YQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGGLR
Sbjct: 519 YQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLR 556


>gi|40642974|emb|CAD89599.1| RNA polymerase II, second largest subunit [Borago officinalis]
          Length = 355

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 208/398 (52%), Positives = 256/398 (64%), Gaps = 84/398 (21%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+  RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 6   MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA----------------------------- 36

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 37  ----------------MEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFR 80

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY+D E K      E F +P+R    GMR+  YDKLDDDG+  PG RV+G+DV+I
Sbjct: 81  SLFFRSYRDEEKKMETLVREDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVAGEDVII 140

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT   P N+DE +G   R+++RD ST +R+SE G+VDQV+LT N DG +F K+R+RSVR
Sbjct: 141 GKTT--PINQDEAQGQASRYTRRDHSTSMRHSENGMVDQVLLTTNADGLRFVKVRMRSVR 198

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 199 IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGTTPDIIVNPHAIPSRMTIGQLIECIMG 258

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGR++ A +FLGPTY
Sbjct: 259 KVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTY 317

Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLR 362
           YQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGGLR
Sbjct: 318 YQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLR 355


>gi|410610281|gb|AFV74909.1| RNA polymerase II second largest subunit, partial [Balanophora
           laxiflora]
          Length = 569

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 210/399 (52%), Positives = 258/399 (64%), Gaps = 84/399 (21%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+  RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 219 MGIYVTNYQYRMDTLAYVLYYPQKPLVTTRA----------------------------- 249

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 250 ----------------MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 293

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY+D E K     +E F +P+R    GMR+  YDKLDDDG+  PG RVSG+DV+I
Sbjct: 294 SLFFRSYRDEEKKMGTLVKEDFGRPDRADTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 353

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GK  T P  +D+ +G   R++++D ST LR+SETGIVDQV+LT N DG +F K+RVRSVR
Sbjct: 354 GK--TSPITQDDNQGQASRYTRQDHSTSLRHSETGIVDQVLLTTNADGLRFVKVRVRSVR 411

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 412 IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMG 471

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGR++ + +FLGPTY
Sbjct: 472 KVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTSLIFLGPTY 530

Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRF 363
           YQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGGLRF
Sbjct: 531 YQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 569


>gi|443919777|gb|ELU39849.1| DNA-directed RNA polymerase II [Rhizoctonia solani AG-1 IA]
          Length = 1179

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 209/403 (51%), Positives = 260/403 (64%), Gaps = 82/403 (20%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG+Y+TN+ +RMDT+A++LYYP KPL TTR                              
Sbjct: 805  MGIYLTNYQIRMDTMANILYYPQKPLATTR------------------------------ 834

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 835  ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 879

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+++RSY D E K      E+FEKP R T   M++  YDKL+ DG IAPG  V+G+D++I
Sbjct: 880  SMYYRSYMDIEKKAGVLNLEEFEKPTRDTTLRMKHGTYDKLEADGFIAPGTGVTGEDIII 939

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT  L  + +EL   T+  +KRD ST L+++E GIVDQV++T N +G+KF K+RVRS R
Sbjct: 940  GKTAPLQADSEELGQRTRSHTKRDVSTPLKSTENGIVDQVLITTNHEGHKFVKVRVRSTR 999

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            +PQ GDKFASRHGQKGT GI YRQE                                   
Sbjct: 1000 VPQTGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDLIINPHAIPSRMTIGHLVECLLS 1059

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             V++  G  GDATPF + + V  +S LLQ+ GYQ RG EVM++GHTG+K+ AQV+ GPTY
Sbjct: 1060 KVATLLGNEGDATPFTE-LTVDSVSQLLQQKGYQSRGLEVMYHGHTGKKLQAQVYFGPTY 1118

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEME 367
            YQRLKHMVDDKIHSRARGPVQIL RQP+EGR+RDGGLRFGEME
Sbjct: 1119 YQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRFGEME 1161


>gi|45545315|gb|AAS67505.1| DNA-dependent RNA polymerase II second largest subunit, partial
           [Cenococcum geophilum]
          Length = 935

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 211/400 (52%), Positives = 259/400 (64%), Gaps = 84/400 (21%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV +TN+ +RM+T+ +VLYYP KPL TTR                              
Sbjct: 583 MGVALTNYALRMETMMNVLYYPQKPLATTR------------------------------ 612

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 613 ---------------SMEYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 657

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+RSY + E KRIG +  EQFEKP R     M+   YDKLDDDG++APG+RVSGDD++
Sbjct: 658 SLFYRSYTEQE-KRIGVNVLEQFEKPTRSDTLRMKGGTYDKLDDDGVVAPGVRVSGDDII 716

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +P +  EL   T   +KRD ST LR++E GIVDQV+ T N +G +F K+R R+ 
Sbjct: 717 IGKTAPIPPDAKELGQKTIMHTKRDVSTPLRSTENGIVDQVLFTTNTEGLRFVKVRTRTT 776

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           ++PQIGDKFASRHGQKGT G+ YRQE                                  
Sbjct: 777 KVPQIGDKFASRHGQKGTIGVTYRQEDMPFTREGLTPDLIINPHAIPSRMTIAHLIECLL 836

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             V S +G  GDATPF D V V+ +S LL+E+GYQ RG EVM+NGHTG+K+ AQVFLGPT
Sbjct: 837 SKVGSLRGCEGDATPFTD-VTVESVSKLLREHGYQSRGFEVMYNGHTGKKMVAQVFLGPT 895

Query: 324 YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRF 363
           YYQRL+HMVDDKIH+RARGP+QIL RQP+EGRARDGGLRF
Sbjct: 896 YYQRLRHMVDDKIHARARGPLQILTRQPVEGRARDGGLRF 935


>gi|40642972|emb|CAD89598.1| RNA polymerase II, second largest subunit [Borago officinalis]
          Length = 355

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 207/398 (52%), Positives = 256/398 (64%), Gaps = 84/398 (21%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+  RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 6   MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA----------------------------- 36

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 37  ----------------MEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFR 80

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY+D E K     +E F +P+R    GMR+  YDKLDDDG+  PG RV+G+DV+I
Sbjct: 81  SLFFRSYRDXEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVAGEDVII 140

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           G T   P N+DE +G   R+++RD ST +R+SE G+VDQV+LT N DG +F K+R+RSVR
Sbjct: 141 GXTT--PINQDEAQGQASRYTRRDHSTSMRHSENGMVDQVLLTTNADGLRFVKVRMRSVR 198

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 199 IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMG 258

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGR++ A +FLGPTY
Sbjct: 259 KVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTY 317

Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLR 362
           YQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGGLR
Sbjct: 318 YQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLR 355


>gi|46277275|gb|AAS86828.1| RNA polymerase II second largest subunit, partial [Acer circinatum]
          Length = 580

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 210/397 (52%), Positives = 256/397 (64%), Gaps = 84/397 (21%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+  RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 232 MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA----------------------------- 262

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 263 ----------------MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 306

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY+D E K     +E F +P+R    GMR+  YDKLDDDG+  PG RVSG+DV+I
Sbjct: 307 SLFFRSYRDEEKKMGTLVKEDFGRPDRCNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 366

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT   P  +DE +G + R+++RD S  LR+SETGIVDQV+LT N DG +F K+RVRSVR
Sbjct: 367 GKTT--PIAQDEAQGQSSRYTRRDHSISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVR 424

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 425 IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMG 484

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGR++ A +FLGPTY
Sbjct: 485 KVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLPAMIFLGPTY 543

Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGL 361
           YQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGGL
Sbjct: 544 YQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGL 580


>gi|89274898|gb|ABD65890.1| RNA polymerase II second largest subunit, partial [Polyporus
           squamosus]
          Length = 898

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 208/395 (52%), Positives = 259/395 (65%), Gaps = 82/395 (20%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF VRMDT+A++LYYP KPL TTR                              
Sbjct: 550 MGIYLTNFLVRMDTMANILYYPQKPLATTR------------------------------ 579

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYLRFRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 580 ---------------SMEYLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 624

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP R+T   M++  YDKL++DG+IAPG  V+G+D++I
Sbjct: 625 SIYYRSYMDLEKKSGIQQLEEFEKPTRETTLRMKHGTYDKLENDGLIAPGTNVNGEDIII 684

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  +KRD ST L+++E GIVDQV++T N +G KF KIRVRS R
Sbjct: 685 GKTAPIPPDSEELGQRTRTHTKRDVSTPLKSTEQGIVDQVLITTNAEGQKFVKIRVRSTR 744

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 745 IPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLS 804

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            +++  G  GDATPF + + V+ +ST L++ GYQ RG EVM++GHTGRK+ AQV+LGPTY
Sbjct: 805 KLATLIGNEGDATPFTN-LTVETVSTFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTY 863

Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDG 359
           YQRLKHMVDDKIHSRARGPVQIL RQP+EGR+RDG
Sbjct: 864 YQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDG 898


>gi|45545349|gb|AAS67522.1| DNA-dependent RNA polymerase II second largest subunit, partial
           [Taphrina deformans]
          Length = 936

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 205/401 (51%), Positives = 263/401 (65%), Gaps = 84/401 (20%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+ VRMDT+A++LYYP KPL TTR                              
Sbjct: 582 MGVFLTNYQVRMDTMANILYYPQKPLATTR------------------------------ 611

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDS+I+N S+++RG FR
Sbjct: 612 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSMIMNQSSIDRGLFR 656

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+F+R Y+D+E K   +Q ++FEKP R+T   M+ + YDKL+DDG++APG RVSG+DV++
Sbjct: 657 SMFYRVYQDSEEKIDMNQAQEFEKPTRETTMKMKRSTYDKLEDDGLVAPGTRVSGEDVIV 716

Query: 181 GKTITLPENED--ELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRS 238
           GKT  L ++E+  +L   +   +KRD ST LR++E GI+D+VM++ N DG+KF K+R+R+
Sbjct: 717 GKTAGLLKDENLADLASRSATQTKRDVSTQLRSTEAGIIDKVMVSTNSDGHKFVKVRIRA 776

Query: 239 VRIPQIGDKFASRHGQKGTCGIQYRQE--------------------------------- 265
            +IPQIGDKFASRHGQKGT G+ YR E                                 
Sbjct: 777 TKIPQIGDKFASRHGQKGTIGVTYRNEDMPFTSEGIVPDLIINPHAIPSRMTVAHLVECQ 836

Query: 266 ---VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGP 322
              V S  G  GDATPF D V V+ +S  L+E GY  RG E+M+NGHTGRK+ AQVFLGP
Sbjct: 837 LSKVGSLSGFEGDATPFTD-VTVEAVSNNLREQGYHSRGFEIMYNGHTGRKLMAQVFLGP 895

Query: 323 TYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRF 363
           TYYQRLKH+VDDKIH+RARGP+QIL RQP+EGRARDGGLRF
Sbjct: 896 TYYQRLKHLVDDKIHARARGPMQILTRQPVEGRARDGGLRF 936


>gi|89274894|gb|ABD65888.1| RNA polymerase II second largest subunit, partial [Laetiporus
           sulphureus]
          Length = 897

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 207/395 (52%), Positives = 258/395 (65%), Gaps = 82/395 (20%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF VRMDT+A++LYYP KPL TTR                              
Sbjct: 549 MGIYLTNFLVRMDTMANILYYPQKPLATTR------------------------------ 578

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYLRFRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 579 ---------------SMEYLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 623

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP R+    M++  YDKL+DDG+IAPG  V+G+D++I
Sbjct: 624 SIYYRSYMDLEKKSGIQQLEEFEKPTRENTLRMKHGTYDKLEDDGLIAPGTGVNGEDIII 683

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E+GI+DQV++T N +G KF KIRVRS R
Sbjct: 684 GKTAPIPPDSEELGQRTRAHTRRDVSTPLKSTESGIIDQVLITTNAEGQKFVKIRVRSTR 743

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 744 IPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIVINPHAIPSRMTIGHLVECLLS 803

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D + V+ +S  L++ GYQ RG EVM++GHTGRK+ AQV+LGPTY
Sbjct: 804 KVATLIGNEGDATPFTD-LTVESVSQFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTY 862

Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDG 359
           YQRLKHMVDDKIHSRARGPVQIL RQP+EGR+RDG
Sbjct: 863 YQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDG 897


>gi|89274900|gb|ABD65891.1| RNA polymerase II second largest subunit, partial [Pycnoporus sp.
           ZW02.30]
          Length = 896

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 208/394 (52%), Positives = 257/394 (65%), Gaps = 82/394 (20%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF VRMDT+A++LYYP KPL TTR                              
Sbjct: 549 MGIYLTNFLVRMDTMANILYYPQKPLATTR------------------------------ 578

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYLRFRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 579 ---------------SMEYLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 623

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP R T   M++  YDKL++DG+IAPG  V+G+D++I
Sbjct: 624 SIYYRSYMDLEKKSGVQQLEEFEKPTRDTTLRMKHGTYDKLEEDGLIAPGTNVNGEDIII 683

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  +KRD ST L+++E+GIVDQV++T N +G KF KIRVRS R
Sbjct: 684 GKTAPIPPDSEELGQRTRTHTKRDVSTPLKSTESGIVDQVLITTNAEGQKFVKIRVRSTR 743

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 744 IPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLS 803

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D + V+ +S  L++ GYQ RG EVM++GHTGRK+ AQV+LGPTY
Sbjct: 804 KVATLIGNEGDATPFTD-LTVESVSQFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTY 862

Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARD 358
           YQRLKHMVDDKIHSRARGPVQIL RQP+EGR+RD
Sbjct: 863 YQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRD 896


>gi|89274902|gb|ABD65892.1| RNA polymerase II second largest subunit, partial [Sparassis
           crispa]
          Length = 900

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 207/394 (52%), Positives = 258/394 (65%), Gaps = 82/394 (20%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF VRMDT+A++LYYP KPL TTR                              
Sbjct: 553 MGIYLTNFLVRMDTMANILYYPQKPLATTR------------------------------ 582

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYLRFRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 583 ---------------SMEYLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 627

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP R T   M++  YDKL+DDG+IAPG  V+G+D++I
Sbjct: 628 SMYYRSYMDLEKKSGVQQLEEFEKPTRDTTLRMKHGTYDKLEDDGLIAPGTGVNGEDIII 687

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  +KRD ST L+++E+GI+DQV++T N DG KF KIRVRS R
Sbjct: 688 GKTAPIPPDSEELGQRTRAHTKRDVSTPLKSTESGIIDQVLITTNADGQKFVKIRVRSTR 747

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           +PQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 748 VPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLS 807

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF + + V+ +S +L++ GYQ RG EVM++GHTGRK+ AQV+LGPTY
Sbjct: 808 KVATLIGNEGDATPFTE-LTVESVSQVLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTY 866

Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARD 358
           YQRLKHMVDDKIHSRARGPVQIL RQP+EGR+RD
Sbjct: 867 YQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRD 900


>gi|55583692|gb|AAV53365.1| RNA polymerase II second largest subunit [Hygrophoropsis
           aurantiaca]
          Length = 863

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 207/395 (52%), Positives = 257/395 (65%), Gaps = 82/395 (20%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF VRMDT+A++LYYP KPL TTR                              
Sbjct: 515 MGIYLTNFLVRMDTMANILYYPQKPLATTR------------------------------ 544

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 545 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 589

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP R T   M++  YDK++DDG+IAPG  VSG+D++I
Sbjct: 590 SIYYRSYMDLEKKSGVQQLEEFEKPTRDTTLRMKHGTYDKIEDDGLIAPGTGVSGEDIII 649

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E GIVDQV++T N +G KF K+RVRS R
Sbjct: 650 GKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTR 709

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQ GDKFASRHGQKGT GI YRQE                                   
Sbjct: 710 IPQTGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLS 769

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D + V+ +ST L++ GYQ RG EVM++GHTGRK+ AQV+LGPTY
Sbjct: 770 KVATLIGNEGDATPFTD-LTVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTY 828

Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDG 359
           YQRLKHMVDDKIHSRARGPVQIL RQP+EGR+RDG
Sbjct: 829 YQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDG 863


>gi|89274904|gb|ABD65893.1| RNA polymerase II second largest subunit, partial [Spongipellis
           pachyodon]
          Length = 901

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 206/399 (51%), Positives = 260/399 (65%), Gaps = 82/399 (20%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF  RMDT+A++LYYP KPL TTR                              
Sbjct: 549 MGIYLTNFLSRMDTMANILYYPQKPLATTR------------------------------ 578

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 579 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 623

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP R T   M++  YDKL+DDG+IAPG  V+G+D++I
Sbjct: 624 SIYYRSYMDLEKKSGIQQLEEFEKPTRDTTLRMKHGTYDKLEDDGLIAPGTNVNGEDIII 683

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E+GIVDQV++T N +G KF KI VRS R
Sbjct: 684 GKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTESGIVDQVLITTNAEGQKFVKIGVRSTR 743

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           +PQIG KFASRHGQKGT GI YRQE                                   
Sbjct: 744 VPQIGGKFASRHGQKGTIGITYRQEDMPFTAEGITPDIVINPHAIPSRMTIGHLVECLLS 803

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            +++  G+ GDATPF + + V+ +S  L++ GYQ RG EVM++GHTGRK+ AQV+LGPTY
Sbjct: 804 KLATLTGQEGDATPFTE-LTVESVSQYLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTY 862

Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRF 363
           YQRLKHMVDDKIHSRARGPVQIL RQP+EGR+RDGGLRF
Sbjct: 863 YQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRF 901


>gi|6606119|gb|AAF19072.1|AF107800_1 DNA-dependent RNA polymerase II RPB140 [Dothidea insculpta]
 gi|82706467|gb|ABB89611.1| RNA polymerase II second largest subunit, partial [Dothidea
           insculpta]
          Length = 936

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 211/400 (52%), Positives = 261/400 (65%), Gaps = 84/400 (21%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV +TN++VRMDT+A+VLYYP KPL TTR                              
Sbjct: 584 MGVTLTNYNVRMDTMANVLYYPQKPLGTTR------------------------------ 613

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAI CY GYNQEDSVI+N S+++RG FR
Sbjct: 614 ---------------SMEYLKFRELPAGQNAIVAIACYGGYNQEDSVIMNQSSIDRGLFR 658

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+R+Y D E KR+G    EQFEKP R     M++  YDKLDDDGII+PG RVSG+D++
Sbjct: 659 SLFYRAYMDQE-KRVGMSVVEQFEKPTRADTLRMKHGTYDKLDDDGIISPGSRVSGEDII 717

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK   KRD ST LR++E+GI+DQV+LT N+DG+KF K+R R+ 
Sbjct: 718 IGKTAPMAPDAEELGQRTKLHVKRDVSTPLRSTESGIIDQVLLTTNIDGHKFVKVRTRTT 777

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT G+ YRQE                                  
Sbjct: 778 KIPQIGDKFASRHGQKGTIGVTYRQEDMPFTADGLVPDLIINPHAIPSRMTIAHLIECLL 837

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             V + +G+ GDATPF D V + ++S LL+ +G+Q RG E+M+NGHTG+K  AQVFLGPT
Sbjct: 838 SKVGALRGQEGDATPFTD-VTITQVSDLLRAHGFQQRGFEIMYNGHTGKKQVAQVFLGPT 896

Query: 324 YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRF 363
           YYQRL+HMVDDKIH+RARGP QIL RQP+EGRARDGGLRF
Sbjct: 897 YYQRLRHMVDDKIHARARGPXQILTRQPVEGRARDGGLRF 936


>gi|45545333|gb|AAS67514.1| DNA-dependent RNA polymerase II second largest subunit, partial
           [Melanomma radicans]
          Length = 936

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 209/400 (52%), Positives = 257/400 (64%), Gaps = 84/400 (21%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV +TN+ +RM+T+ +VLYYP KPL TTR                              
Sbjct: 584 MGVALTNYALRMETMMNVLYYPQKPLATTR------------------------------ 613

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 614 ---------------SMEYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 658

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+R+Y + E KRIG +  E+FEKP R     ++   YDKLDDDG++APG+RVSGDD++
Sbjct: 659 SLFYRAYTEQE-KRIGVNVLERFEKPTRADTLRLKGGTYDKLDDDGVVAPGVRVSGDDII 717

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +P +  EL   T   +KRD ST LR++E GIVDQV+ T N +G +F K+R R+ 
Sbjct: 718 IGKTAPIPTDAKELGQKTTMHTKRDVSTPLRSTENGIVDQVLFTTNTEGLRFVKVRTRTT 777

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           ++PQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 778 KVPQIGDKFASRHGQKGTIGITYRQEDMPFTREGLTPDLIINPHAIPSRMTIAHLVECLL 837

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             V S KG  GDATPF D V V  +S LL ++GYQ RG EVM+NGHTG+K+ AQVFLGPT
Sbjct: 838 SKVGSLKGNEGDATPFTD-VTVDGVSNLLAQHGYQQRGFEVMYNGHTGKKLRAQVFLGPT 896

Query: 324 YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRF 363
           YYQRL+HMVDDKIH+RARGP+QIL RQP+EGRARDGGLRF
Sbjct: 897 YYQRLRHMVDDKIHARARGPLQILTRQPVEGRARDGGLRF 936


>gi|83415497|gb|ABC17956.1| RNA polymerase II second largest subunit, partial [Rozella
           allomycis]
          Length = 697

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 206/399 (51%), Positives = 258/399 (64%), Gaps = 82/399 (20%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+  TNF  RMDTL ++L+YP KPLVTTR                              
Sbjct: 345 MGINSTNFQRRMDTLNNILFYPQKPLVTTR------------------------------ 374

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL FRELPAG N+IVAI CY+GYNQEDSVI+N SA++RG FR
Sbjct: 375 ---------------SMEYLHFRELPAGQNAIVAIACYSGYNQEDSVIMNQSAIDRGLFR 419

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+ +++Y D E K    Q E+F KP   T   MR+  YDKL+DDG++APG+++SG+D++I
Sbjct: 420 SICYKTYTDEEKKVGTLQVEEFMKPTFTTTVRMRHGTYDKLEDDGLVAPGIKISGEDIII 479

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT+ +P++ DEL   T   ++RD ST L+++E GI+DQVM++ N DGY+F KIRV SVR
Sbjct: 480 GKTVPIPDDSDELGQRTSTHTRRDASTPLKSNEHGIIDQVMISTNADGYRFVKIRVSSVR 539

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           +PQ+GDKFASRHGQKGT GI YRQE                                   
Sbjct: 540 VPQMGDKFASRHGQKGTVGITYRQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLG 599

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            VS+  G+ GDATPF D V V+ IS  L + GYQ RG EV++NGH+GRK+NAQ+F+GPTY
Sbjct: 600 KVSAITGDEGDATPFTD-VTVESISETLLKCGYQSRGFEVLYNGHSGRKLNAQIFIGPTY 658

Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRF 363
           YQRLKHMVDDKIH+RARGPVQIL RQP+EGR+RDGGLRF
Sbjct: 659 YQRLKHMVDDKIHARARGPVQILTRQPVEGRSRDGGLRF 697


>gi|83415465|gb|ABC17940.1| RNA polymerase II second largest subunit, partial [Dimargaris
           bacillispora]
          Length = 723

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 211/400 (52%), Positives = 258/400 (64%), Gaps = 84/400 (21%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+++T++  RMDTLA++LYYP K L TTR                              
Sbjct: 371 MGIFLTSYQSRMDTLANILYYPQKLLATTR------------------------------ 400

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYLRFRELPAG N+IVAILCY+GYNQEDS+I+N S+++RG FR
Sbjct: 401 ---------------SMEYLRFRELPAGQNAIVAILCYSGYNQEDSLIMNQSSIDRGLFR 445

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+RSY+D E KR+G    E F+KP R+T   +++  Y+KL+DDG+IAPG+RVSGDD++
Sbjct: 446 SLFYRSYQDQE-KRLGMTVMESFDKPTRETTVRLKHGTYEKLEDDGLIAPGIRVSGDDII 504

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  LP++  EL       + +D ST LR++ETGIVDQVMLT N DG KF K+R+RS 
Sbjct: 505 IGKTAPLPDDTTELGQRVVTHANKDVSTPLRSTETGIVDQVMLTTNQDGLKFVKVRIRST 564

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           R+PQ+GDKFASRHGQKGT GI YR E                                  
Sbjct: 565 RVPQMGDKFASRHGQKGTIGITYRTEDMPFSREGITPDLIINPHAIPSRMTIGHLVECLL 624

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             +S+  G  GDATPF D V V+ IS  L   GYQ RG EV++NGHTGRK+ AQVF GPT
Sbjct: 625 SKLSTLTGSEGDATPFTD-VTVEAISEALAANGYQQRGFEVLYNGHTGRKLTAQVFFGPT 683

Query: 324 YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRF 363
           YYQRLKHMVDDKIHSRARGPVQIL RQP+EGR+RDGGLRF
Sbjct: 684 YYQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRF 723


>gi|55583686|gb|AAV53362.1| RNA polymerase II second largest subunit [Fomitopsis pinicola]
          Length = 704

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 207/394 (52%), Positives = 257/394 (65%), Gaps = 82/394 (20%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF VRMDT+A++LYYP KPL TTR                              
Sbjct: 357 MGIYLTNFLVRMDTMANILYYPQKPLATTR------------------------------ 386

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYLRFRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 387 ---------------SMEYLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 431

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP R+T   M++  YDKL+DDG+IAPG  V+G+D++I
Sbjct: 432 SMYYRSYMDLEKKNGIQQLEKFEKPTRETTLRMKHGTYDKLEDDGLIAPGTGVNGEDIII 491

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E+GI+DQV++T N +G KF KIRVRS R
Sbjct: 492 GKTAPIPPDSEELGQRTRNHTRRDVSTPLKSTESGIIDQVLITTNAEGQKFVKIRVRSTR 551

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 552 IPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIVINPHAIPSRMTIGHLVECLLS 611

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D + V  +S  L++ GYQ RG EVM++GHTGRK+ AQV+LGPTY
Sbjct: 612 KVATLIGNEGDATPFTD-LTVDSVSGFLRQRGYQSRGLEVMYHGHTGRKLQAQVYLGPTY 670

Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARD 358
           YQRLKHMVDDKIHSRARGPVQIL RQP+EGR+RD
Sbjct: 671 YQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRD 704


>gi|58618681|gb|AAW80835.1| RNA polymerase II second largest subunit [Cotylidia sp. MB5]
          Length = 892

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 206/392 (52%), Positives = 256/392 (65%), Gaps = 82/392 (20%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF VRMDT+A++LYYP KPL TTR                              
Sbjct: 547 MGIYLTNFLVRMDTMANILYYPQKPLATTR------------------------------ 576

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 577 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 621

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP R+T   M++  YDK++DDG+IAPG  VSG+D++I
Sbjct: 622 SMYYRSYMDLEKKSGVQQLEEFEKPTRETTLRMKHGTYDKIEDDGLIAPGTGVSGEDIII 681

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E GIVDQV++T N DG KF K+RVRS R
Sbjct: 682 GKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVDQVLITTNSDGQKFVKVRVRSTR 741

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 742 IPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLS 801

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D + V+ +ST L++ GYQ RG EVM++GHTGRK+ AQV+LGPTY
Sbjct: 802 KVATLIGNEGDATPFTD-LTVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTY 860

Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRA 356
           YQRLKHMVDDKIHSRARGPVQIL RQP+EGR+
Sbjct: 861 YQRLKHMVDDKIHSRARGPVQILTRQPVEGRS 892


>gi|45545303|gb|AAS67499.1| DNA-dependent RNA polymerase II second largest subunit, partial
           [Aspergillus fumigatus]
          Length = 936

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 214/400 (53%), Positives = 259/400 (64%), Gaps = 84/400 (21%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TNF  RM+T+A++LYYP KPL TTR                              
Sbjct: 584 MGVFLTNFDQRMETMANILYYPQKPLATTR------------------------------ 613

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+LRFRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 614 ---------------SMEFLRFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 658

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+R+Y D+E K +G    E+FEKP R    GMR   YDKLD+DGIIAPG+RVSG+D++
Sbjct: 659 SLFYRTYTDSE-KMVGLTVVERFEKPMRSDTIGMRKGTYDKLDEDGIIAPGVRVSGEDII 717

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  L    +EL   TK  +K D ST LR++E GIVDQV+++ + D  KF K+R+R+ 
Sbjct: 718 IGKTAPLAPEAEELGQRTKAHTKLDVSTPLRSTENGIVDQVLVSTSNDDLKFVKVRMRTT 777

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 778 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTREGVSPDLIINPHAIPSRMTIAHLIECQL 837

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VS+ +G  GDATPF D V V  IS LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 838 SKVSALRGFEGDATPFTD-VTVDSISRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 896

Query: 324 YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRF 363
           YYQRL+HMVDDKIH+RARGP QIL RQP+EGRARDGGLRF
Sbjct: 897 YYQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRF 936


>gi|159487647|ref|XP_001701834.1| DNA-directed RNA polymerase II, 135 kDa polypeptide [Chlamydomonas
            reinhardtii]
 gi|158281053|gb|EDP06809.1| DNA-directed RNA polymerase II, 135 kDa polypeptide [Chlamydomonas
            reinhardtii]
          Length = 1634

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 203/406 (50%), Positives = 250/406 (61%), Gaps = 85/406 (20%)

Query: 1    MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
            MG+Y TN+  RMDT   VLYYP KPLV TR+                             
Sbjct: 757  MGMYATNYQTRMDTQGFVLYYPQKPLVCTRA----------------------------- 787

Query: 61   SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                            M+YL+FRELPAGIN+IVAI+CY+GYNQEDS++LN S+++RG+ R
Sbjct: 788  ----------------MDYLKFRELPAGINAIVAIMCYSGYNQEDSLMLNGSSIDRGFHR 831

Query: 121  SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
            S+F+R+YK+ E K      E+ E P+      M++  YDKLD DG+  PG RVSG+D++ 
Sbjct: 832  SIFYRAYKEEEKKAGSMAREEIEAPDPSVTSKMKHGTYDKLDADGLCPPGTRVSGEDIIC 891

Query: 181  GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
            GKT+TLP   D+  G  +RF+K+D S  LR  E G++DQVMLT N +G KF KIRVR++ 
Sbjct: 892  GKTVTLP---DDPTGAVQRFTKKDASLALRGHEAGVIDQVMLTTNDEGQKFVKIRVRTIC 948

Query: 241  IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
            IPQ+GDKFASRHGQKGTCGI Y  E                                   
Sbjct: 949  IPQVGDKFASRHGQKGTCGITYTMEDMPFTAEGIVPDIIVNPHAIPSRMTIGHLVEALMS 1008

Query: 266  -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
             V+S  G  GDATPF   V V  +S +L + GYQ RG EVM++GHTGR++ AQ+FL PTY
Sbjct: 1009 KVASLMGSEGDATPFTK-VTVDNVSQMLHDLGYQRRGWEVMYSGHTGRQLRAQIFLNPTY 1067

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDC 370
            YQRLKHMVD KIHSR RGPVQ+L RQP EGRARDGGLRFGEMERDC
Sbjct: 1068 YQRLKHMVDFKIHSRGRGPVQVLTRQPAEGRARDGGLRFGEMERDC 1113



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 48/80 (60%), Positives = 59/80 (73%)

Query: 369  DCQISHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRL 428
            +C ISHGAA FL+ERLF+ SD YRIHVC   GLIA+AN++   F     K+ + I QV +
Sbjct: 1543 NCIISHGAAAFLKERLFDQSDAYRIHVCERSGLIAVANLKKQQFTSTIYKDGSNIYQVYI 1602

Query: 429  PYAAKLLFQELMSMNIAPRL 448
            PYA KLLFQELM+M IAPR+
Sbjct: 1603 PYACKLLFQELMAMCIAPRM 1622


>gi|55273987|gb|AAV48864.1| RNA polymerase II second largest subunit [Albatrellus higanensis]
          Length = 913

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 205/390 (52%), Positives = 254/390 (65%), Gaps = 82/390 (21%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF VRMDT+A++LYYP KPL TTR                              
Sbjct: 570 MGIYLTNFLVRMDTMANILYYPQKPLATTR------------------------------ 599

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYLRFRELPAG N++VAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 600 ---------------SMEYLRFRELPAGQNAVVAILCYSGYNQEDSVIMNQSSIDRGLFR 644

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP R+    M++  YDKL+DDG+IAPG  V+G+D++I
Sbjct: 645 SMYYRSYMDLEKKSGVQQLEEFEKPTRENTLRMKHGTYDKLEDDGLIAPGTNVNGEDIII 704

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   TK  S+RD ST L+++E+GI+DQV+LT N +G KF KIRVRS R
Sbjct: 705 GKTAPIPPDSEELGQRTKTHSRRDVSTPLKSTESGIIDQVLLTTNAEGQKFVKIRVRSTR 764

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 765 IPQIGDKFASRHGQKGTIGIAYRQEDMPFTAEGITPDLIINPHAIPSRMTIGHLVECLLS 824

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G+ GDATPF D + V+ +S  L+E GYQ RG E+M++GHTGRK+ AQV+LGPTY
Sbjct: 825 KVATLLGQEGDATPFTD-LTVESVSHFLREKGYQSRGLEIMYHGHTGRKLQAQVYLGPTY 883

Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEG 354
           YQRLKHMVDDKIHSRARGPVQIL RQP+EG
Sbjct: 884 YQRLKHMVDDKIHSRARGPVQILTRQPVEG 913


>gi|55583688|gb|AAV53363.1| RNA polymerase II second largest subunit [Grifola frondosa]
          Length = 719

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 206/392 (52%), Positives = 256/392 (65%), Gaps = 82/392 (20%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF VRMDT+A++LYYP KPL TTR                              
Sbjct: 374 MGIYLTNFLVRMDTMANILYYPQKPLATTR------------------------------ 403

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYLRFRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 404 ---------------SMEYLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 448

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP R T   M++  YDKL+DDG+IAPG  V+G+D++I
Sbjct: 449 SMYYRSYMDLEKKSGVQQLEEFEKPTRDTTLRMKHGTYDKLEDDGLIAPGTGVNGEDIII 508

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E+GI+DQV++T N +G KF KIRVRS R
Sbjct: 509 GKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTESGIIDQVLITTNAEGQKFVKIRVRSTR 568

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 569 IPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLS 628

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D V V+ +S +L++ GYQ RG EVM++GHTGRK+ AQV+LGPTY
Sbjct: 629 KVATLIGNEGDATPFTD-VTVESVSAVLRQRGYQSRGLEVMYHGHTGRKLQAQVYLGPTY 687

Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRA 356
           YQRLKHMVDDKIHSRARGPVQIL RQP+EGR+
Sbjct: 688 YQRLKHMVDDKIHSRARGPVQILTRQPVEGRS 719


>gi|56694368|gb|AAW22924.1| RNA polymerase II second largest subunit [Drimys winteri]
          Length = 565

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 204/391 (52%), Positives = 253/391 (64%), Gaps = 84/391 (21%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+ +RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 223 MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA----------------------------- 253

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 254 ----------------MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 297

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY+D E K     +E F +PNR+   GMR+  YDKLDDDG+  PG RVSG+DV+I
Sbjct: 298 SLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 357

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT   P  +DE +G   R+++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVR
Sbjct: 358 GKTT--PIAQDESQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVR 415

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           +PQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 416 VPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMG 475

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGRK++A +FLGPTY
Sbjct: 476 KVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRKLSAMIFLGPTY 534

Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGR 355
           YQRLKHMVDDKIHSR RGPVQIL RQP EGR
Sbjct: 535 YQRLKHMVDDKIHSRGRGPVQILTRQPAEGR 565


>gi|45545321|gb|AAS67508.1| DNA-dependent RNA polymerase II second largest subunit, partial
           [Cryphonectria parasitica]
          Length = 941

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 207/400 (51%), Positives = 261/400 (65%), Gaps = 84/400 (21%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG ++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 589 MGFFLTNYSRRMDTMANILYYPQKPLATTR------------------------------ 618

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 619 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 663

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+FFRSY D+E KR+G +  E FEKP R     +++  YDKLDDDGIIAPG+RVSG+D++
Sbjct: 664 SLFFRSYTDSE-KRVGINVVESFEKPFRSDTLRLKHGTYDKLDDDGIIAPGVRVSGEDII 722

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  +  EL   T++  KRD ST LR++E+GI+D V++T N DG ++ K+RVR+ 
Sbjct: 723 IGKTSPINADNQELGQRTEQHVKRDASTPLRSTESGIIDSVIVTTNQDGLRYVKVRVRTT 782

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT G+ YRQE                                  
Sbjct: 783 KIPQIGDKFASRHGQKGTIGVTYRQEDMPFTREGITPDIIINPHAIPSRMTIAHLIECLM 842

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             +++ KG  GDATPF + V V  IS LL+++GYQ RG EVM+NGHTGRK+ AQVF GPT
Sbjct: 843 SKLATLKGMEGDATPFTE-VTVDSISELLRQHGYQSRGFEVMYNGHTGRKLRAQVFFGPT 901

Query: 324 YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRF 363
           YYQRL+HMVDDKIH+RARGPVQI+ RQP+EGRARDGGLRF
Sbjct: 902 YYQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRF 941


>gi|6606135|gb|AAF19080.1|AF107808_1 DNA-dependent RNA polymerase II RPB140, partial [Sclerotinia
           sclerotiorum]
          Length = 938

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 207/400 (51%), Positives = 261/400 (65%), Gaps = 84/400 (21%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TNF VRMDT+A++LYYP KPL TTR                              
Sbjct: 586 MGVFLTNFDVRMDTMANILYYPQKPLATTR------------------------------ 615

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI+CY+GYNQEDSVI+N S+++RG FR
Sbjct: 616 ---------------SMEFLKFRELPAGQNAIVAIMCYSGYNQEDSVIMNQSSIDRGLFR 660

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+R+Y D E KRIG +  EQFEKP R     ++   Y+KLDDDGI+APG+RV+G D++
Sbjct: 661 SLFYRAYTDQE-KRIGMNVVEQFEKPYRSDTLKLKQGTYEKLDDDGIVAPGVRVTGADII 719

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +E+   TK   KRD ST LR++E+G+VDQV+LT N +G +F K+R+R+ 
Sbjct: 720 IGKTAPIAPDSEEMGQRTKAHVKRDASTPLRSTESGLVDQVLLTTNAEGLRFVKVRMRTT 779

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI Y Q+                                  
Sbjct: 780 KIPQIGDKFASRHGQKGTIGITYMQQDMPFTREGVVPDLIINPHAIPSRMTIAHLIECQL 839

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + V V  +S LL+ +GY  RG E+M++GHTGRK+ AQVFLGPT
Sbjct: 840 SKVSSLRGLEGDATPFTE-VTVDSVSKLLRAHGYHSRGFEIMYHGHTGRKMMAQVFLGPT 898

Query: 324 YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRF 363
           YYQRL+HMVDDKIH+RARGPVQIL RQP+EGRARDGGLRF
Sbjct: 899 YYQRLRHMVDDKIHARARGPVQILTRQPVEGRARDGGLRF 938


>gi|6606101|gb|AAF19063.1|AF107791_1 DNA-dependent RNA polymerase II RPB140 [Chaetomium elatum]
          Length = 934

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 205/400 (51%), Positives = 262/400 (65%), Gaps = 84/400 (21%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG ++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 582 MGFFLTNYSRRMDTMANILYYPQKPLATTR------------------------------ 611

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 612 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGIFR 656

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+FFRSY D E KR+G +  EQFEKPNR     ++++ YDKLD DGI+APG+RVSG+D++
Sbjct: 657 SLFFRSYTDCE-KRVGINIVEQFEKPNRSDTLRLKHSTYDKLDADGIVAPGIRVSGEDII 715

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  +  EL   + +  KRD ST LR++E+GI+DQV++T N DG ++ K+RVR+ 
Sbjct: 716 IGKTCPINPDNAELGQRSNQHVKRDASTPLRSTESGIIDQVVVTTNQDGMRYVKVRVRTT 775

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           ++PQIGDKFASRHGQKGT G+ YRQE                                  
Sbjct: 776 KVPQIGDKFASRHGQKGTIGVTYRQEDMPFTAEGITPDIIINPHAIPSRMTIAHLIECLL 835

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VS+ KG  GDATPF D V V  +S LL+E+GYQ RG E+M++GHTGRK+ +QVF GPT
Sbjct: 836 SKVSTLKGMEGDATPFTD-VTVDSVSDLLREHGYQSRGFEIMYHGHTGRKLRSQVFFGPT 894

Query: 324 YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRF 363
           YYQRL+HMVDDKIH+RARGP+QI+ RQP+EGRARDGGLRF
Sbjct: 895 YYQRLRHMVDDKIHARARGPLQIMTRQPVEGRARDGGLRF 934


>gi|46277251|gb|AAS86816.1| RNA polymerase II second largest subunit, partial [Cycas revoluta]
          Length = 567

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 206/392 (52%), Positives = 256/392 (65%), Gaps = 86/392 (21%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+ +RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 225 MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA----------------------------- 255

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 256 ----------------MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 299

Query: 121 SVFFRSYKDAESKRIGDQ-EEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+RSY+D E KR+G   +E+F +PNR+   GMR+  YDKLDDDG+  PG RVSG+DV+
Sbjct: 300 SLFYRSYRD-EEKRMGTLVKEEFGRPNRENTTGMRHGSYDKLDDDGLAPPGTRVSGEDVI 358

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT   P  +DE  G   R++KRD ST LR+SE+G+VDQV+LT N DG +F K+R+RSV
Sbjct: 359 IGKTT--PITQDEAGGQAARYTKRDQSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSV 416

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           RIPQIGDKF+SRHGQKGT G+ Y QE                                  
Sbjct: 417 RIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIM 476

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGR+++A +FLGPT
Sbjct: 477 GKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPT 535

Query: 324 YYQRLKHMVDDKIHSRARGPVQILVRQPMEGR 355
           YYQRLKHMVDDKIHSR RGPVQIL RQP EGR
Sbjct: 536 YYQRLKHMVDDKIHSRGRGPVQILTRQPAEGR 567


>gi|83415463|gb|ABC17939.1| RNA polymerase II second largest subunit, partial [Cladochytrium
           replicatum]
          Length = 725

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 205/399 (51%), Positives = 258/399 (64%), Gaps = 83/399 (20%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG ++TN+ +R DT+ ++L+YP KPL TTR                              
Sbjct: 374 MGTFLTNYLLRYDTMMNILFYPQKPLGTTR------------------------------ 403

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYLRFRELPAG N+ VAI CY+GYNQEDS+I+N S+++RG FR
Sbjct: 404 ---------------SMEYLRFRELPAGQNACVAIACYSGYNQEDSIIMNXSSIDRGLFR 448

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++R Y D E K    Q E FEKP R+T   +R+  Y+KL+DDG+IAPG+RVSGDD++I
Sbjct: 449 SMYYRVYMDQEKKVGMLQTETFEKPTRETTLRLRHGTYEKLEDDGLIAPGMRVSGDDIII 508

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT+ L    DEL G  +  +KRD ST L+++E GIVD V++T N DGYKF K+RVRSVR
Sbjct: 509 GKTVPLQTESDEL-GQRQAQTKRDASTPLKSTEQGIVDSVLVTTNSDGYKFIKVRVRSVR 567

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQ+GDKFASRHGQKGT G+ YRQE                                   
Sbjct: 568 IPQMGDKFASRHGQKGTVGMTYRQEDMPFTAEGISPDLIVNPHAIPSRMTIGHLVECLLS 627

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D + V ++S LL E+G+Q RG EV++NGHTG+K+ AQ+F+GPTY
Sbjct: 628 KVATLTGREGDATPFTD-LTVHQVSDLLYEHGHQQRGFEVLYNGHTGKKLRAQLFMGPTY 686

Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRF 363
           YQRLKHMVDDKIHSRARGPVQIL RQP+EGR+RDGGLRF
Sbjct: 687 YQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRF 725


>gi|6606091|gb|AAF19058.1|AF107786_1 DNA-dependent RNA polymerase II RPB140, partial [Neolecta
           vitellina]
          Length = 930

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 207/400 (51%), Positives = 261/400 (65%), Gaps = 84/400 (21%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+ +RMDT+A++LYYP KPL TTR                              
Sbjct: 578 MGVFLTNYQLRMDTMANILYYPQKPLATTR------------------------------ 607

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FR+LPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 608 ---------------SMEYLKFRDLPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 652

Query: 121 SVFFRSYKDAESKRIGDQ-EEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+R Y D E K+IG Q  E+FEKP RQT   +++  Y+KL++DG+IAPG+RVSG+D++
Sbjct: 653 SMFYRCYNDQE-KKIGMQVMEEFEKPTRQTTLRLKHGTYEKLEEDGLIAPGIRVSGEDII 711

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  +  EL   T   +KRD ST LR++E GIVD V++T N +G KF K+R+RS 
Sbjct: 712 IGKTAPISPDTQELGQRTSHHTKRDVSTPLRSTENGIVDHVVVTTNQEGLKFVKVRMRST 771

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           R+PQIGDKFASRHGQKGT GI YR E                                  
Sbjct: 772 RVPQIGDKFASRHGQKGTIGITYRHEDMPFSAQGVVPDLIINPHAIPSRMTVAHLIECQL 831

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VS+  G  GDATPF + V V+++S  L+  G+Q RG EVM+NGHTG+K+ AQVFLGPT
Sbjct: 832 SKVSAMGGYEGDATPFTE-VTVEQVSQQLRNQGFQSRGFEVMYNGHTGKKLMAQVFLGPT 890

Query: 324 YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRF 363
           YYQRLKHMVDDKIH+RARGPVQIL RQP+EGR+RDGGLRF
Sbjct: 891 YYQRLKHMVDDKIHARARGPVQILTRQPVEGRSRDGGLRF 930


>gi|46277273|gb|AAS86827.1| RNA polymerase II second largest subunit, partial [Antirrhinum
           majus]
          Length = 573

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 205/399 (51%), Positives = 254/399 (63%), Gaps = 86/399 (21%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+ +RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 225 MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA----------------------------- 255

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 256 ----------------MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 299

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY+D E K     +E F  PNR    GMR+  YDKL+DDG   PG RVSGDDV+I
Sbjct: 300 SLFFRSYRDEEKKMGTLVKEDFGCPNRDNTMGMRHGSYDKLEDDGFAPPGTRVSGDDVII 359

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT     +E++      RF+++D S+ LR+SE+G+VDQV+LT N DG +F K+R+RSVR
Sbjct: 360 GKTTPFTPDENQ----NIRFTRQDHSSSLRHSESGVVDQVLLTTNADGLRFVKVRIRSVR 415

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKF+SRHGQKGT G+ Y Q+                                   
Sbjct: 416 IPQIGDKFSSRHGQKGTIGMTYTQDDMPWSIEGITPDIIVNPHAIPSRMTIGQLIECIMG 475

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGR + + +FLGPTY
Sbjct: 476 KVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRPLTSMIFLGPTY 534

Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRF 363
           YQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGGLRF
Sbjct: 535 YQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 573


>gi|56694370|gb|AAW22925.1| RNA polymerase II second largest subunit [Asarum caudatum]
          Length = 565

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 203/391 (51%), Positives = 252/391 (64%), Gaps = 84/391 (21%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+ +RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 223 MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA----------------------------- 253

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 254 ----------------MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 297

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY+D E K     +E F +PNR+   GMR+  YDKLDDDG+  PG RVSG+DV+I
Sbjct: 298 SLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 357

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT   P  +DE +G   R+++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVR
Sbjct: 358 GKTT--PIAQDESQGQASRYTRRDHSTALRHSESGMVDQVLLTTNADGLRFVKVRMRSVR 415

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           +PQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 416 VPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMG 475

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGR++ A +FLGPTY
Sbjct: 476 KVAAHMGKEGDATPFTD-VTVDSISRALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTY 534

Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGR 355
           YQRLKHMVDDKIHSR RGPVQIL RQP EGR
Sbjct: 535 YQRLKHMVDDKIHSRGRGPVQILTRQPAEGR 565


>gi|83415471|gb|ABC17943.1| RNA polymerase II second largest subunit, partial [Entomophthora
           muscae]
          Length = 726

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 206/399 (51%), Positives = 256/399 (64%), Gaps = 82/399 (20%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGVY+TN+ +RMDTLA++LYYP KPLV TR                              
Sbjct: 374 MGVYLTNYQLRMDTLANILYYPQKPLVATRG----------------------------- 404

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+LRFRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 405 ----------------MEFLRFRELPAGQNAIVAICCYSGYNQEDSVIMNQSSIDRGLFR 448

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++R+Y D E K    + E FEKP   T   +R+  Y+KL+DDG+IAPG RVSGDD++I
Sbjct: 449 SIYYRTYLDQEKKAGLVEMETFEKPTSATTLRLRHGTYEKLEDDGLIAPGTRVSGDDIII 508

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL       +KRD ST L+++ETGIVD+VMLT+N +G +F K+RVRS R
Sbjct: 509 GKTAPVPPDSEELGQRRHGQTKRDVSTPLKSTETGIVDRVMLTINQEGMRFAKVRVRSTR 568

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           +PQIGDKFASRHGQKGT G+ YR E                                   
Sbjct: 569 VPQIGDKFASRHGQKGTIGMTYRNEGMPFSAEGIVPDLVINPHAIPSRMTIGHMVECLVG 628

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V +  G  GDATPF + V V  IS LL+++GYQ RG EVM+NGHTG+K+ AQ++ GPTY
Sbjct: 629 KVGTLDGSEGDATPFTN-VTVDGISGLLEKFGYQKRGFEVMYNGHTGKKLTAQIYFGPTY 687

Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRF 363
           YQRLKHMVDDKIHSRARGPVQIL RQP+EGR+RDGGLRF
Sbjct: 688 YQRLKHMVDDKIHSRARGPVQILTRQPVEGRSRDGGLRF 726


>gi|55583696|gb|AAV53367.1| RNA polymerase II second largest subunit [Phyllotopsis sp. MB35]
          Length = 889

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 203/392 (51%), Positives = 255/392 (65%), Gaps = 82/392 (20%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF +RMDT+A++LYYP KPL TTR                              
Sbjct: 544 MGIYLTNFLIRMDTMANILYYPQKPLATTR------------------------------ 573

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 574 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 618

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP R     M++  YDKL+DDG+IAPG  V+G+D++I
Sbjct: 619 SIYYRSYMDLEKKSGIQQLEEFEKPMRDNTLRMKHGTYDKLEDDGLIAPGTGVAGEDIII 678

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E+GIVDQV++T N +G KF K+RVRS R
Sbjct: 679 GKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRSTR 738

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           +PQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 739 VPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLS 798

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D + V+ +ST L++ GYQ RG EVMF+GHTGRK+ AQV+LGPTY
Sbjct: 799 KVATLIGNEGDATPFTD-LTVESVSTFLRQKGYQSRGLEVMFHGHTGRKLQAQVYLGPTY 857

Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRA 356
           YQRLKHMVDDKIHSRARGPVQIL RQP+EGR+
Sbjct: 858 YQRLKHMVDDKIHSRARGPVQILTRQPVEGRS 889


>gi|89274922|gb|ABD65902.1| RNA polymerase II second largest subunit, partial [Tremellodendron
           pallidum]
          Length = 716

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 202/399 (50%), Positives = 260/399 (65%), Gaps = 82/399 (20%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+ ++NF +RMDT+A++LYYP KPL TTR++                            
Sbjct: 364 MGISLSNFLLRMDTMANILYYPQKPLATTRAL---------------------------- 395

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                            EYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 396 -----------------EYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGXFR 438

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S++++SY D E        E+FEKP+R+    M++  YDKLDDDGIIAPG  V G+D++I
Sbjct: 439 SIYYKSYMDVEKTTGQVILEEFEKPSRENTXRMKHGNYDKLDDDGIIAPGTNVIGEDILI 498

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  LPE  +EL       ++RD ST L+++E+GIVD V+++LN DG++F KIRVRS R
Sbjct: 499 GKTAPLPEGSEELGQRKSTHTRRDVSTPLKSTESGIVDHVIVSLNADGHRFVKIRVRSTR 558

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           +PQIGDKFASRHGQKGT G+ YRQE                                   
Sbjct: 559 VPQIGDKFASRHGQKGTIGVTYRQEDMPFTADGITPDLVINPHAIPSRMTIGHLVECLLS 618

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G+ GDATPF D + V+ +S +L+E G+Q RG EVM++GHTGRK+ AQV+LGPTY
Sbjct: 619 KVATLLGQDGDATPFTD-LTVEGVSAVLKERGFQSRGLEVMYHGHTGRKLQAQVYLGPTY 677

Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRF 363
           YQRLKHMV+DKIHSRARGPVQIL RQP+EGR+RDGGLRF
Sbjct: 678 YQRLKHMVEDKIHSRARGPVQILTRQPVEGRSRDGGLRF 716


>gi|56694346|gb|AAW22913.1| RNA polymerase II second largest subunit [Taxus brevifolia]
          Length = 549

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 207/392 (52%), Positives = 256/392 (65%), Gaps = 86/392 (21%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+ +RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 207 MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA----------------------------- 237

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 238 ----------------MEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFR 281

Query: 121 SVFFRSYKDAESKRIGDQ-EEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+FFRSY+D E KR+G   +E+F +PNR+   GMR+  YDKLDDDG+  PG RVSG+DV+
Sbjct: 282 SLFFRSYRD-EEKRMGTLVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVI 340

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT   P  +DE  G   +++KRD ST LR+SE+G+VDQV+LT N DG +F K+R+RSV
Sbjct: 341 IGKTT--PIAQDEAGGQVSKYTKRDQSTSLRHSESGMVDQVLLTTNQDGLRFVKVRMRSV 398

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           RIPQIGDKF+SRHGQKGT G+ Y QE                                  
Sbjct: 399 RIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIM 458

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGRK++A +FLGPT
Sbjct: 459 GKVAAHMGKEGDATPFTD-VTVDSISKALHKCGYQMRGFETMYNGHTGRKLSAMIFLGPT 517

Query: 324 YYQRLKHMVDDKIHSRARGPVQILVRQPMEGR 355
           YYQRLKHMVDDKIHSR RGPVQIL RQP EGR
Sbjct: 518 YYQRLKHMVDDKIHSRGRGPVQILTRQPAEGR 549


>gi|46277289|gb|AAS86835.1| RNA polymerase II second largest subunit, partial [Camellia
           japonica]
          Length = 591

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 203/396 (51%), Positives = 254/396 (64%), Gaps = 84/396 (21%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+ +RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 244 MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA----------------------------- 274

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+ VAI CY+GYNQEDS+I+N S+++RG+FR
Sbjct: 275 ----------------MEHLHFRQLPAGINATVAIACYSGYNQEDSLIMNQSSIDRGFFR 318

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY+D E K     +E F  PNR    GMR+  YDKLDDDG+  PG RVSG+DV+I
Sbjct: 319 SLFFRSYRDEEKKMGTLIKEDFGCPNRDNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 378

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT   P   +E +G + R+++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVR
Sbjct: 379 GKTT--PMVPEETQGPSSRYTRRDHSTALRHSESGMVDQVLLTTNADGLRFVKVRMRSVR 436

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 437 IPQIGDKFSSRHGQKGTVGMTYTQEDMPWSIEGITPDIIVNPHAIPSRMTVGQLIECIMG 496

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V+++ G+ GDATPF D V +  IS  L + GYQ+RG E M+NGHTGR++ + +FLGPTY
Sbjct: 497 KVAAHVGKKGDATPFTD-VTLDNISKALHKCGYQMRGFETMYNGHTGRQLTSMIFLGPTY 555

Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGG 360
           YQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGG
Sbjct: 556 YQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGG 591


>gi|83415481|gb|ABC17948.1| RNA polymerase II second largest subunit, partial [Coemansia
           reversa]
          Length = 722

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 206/399 (51%), Positives = 251/399 (62%), Gaps = 82/399 (20%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+ +TN+ +RMDTLA+VLYYP KPL TTR+                             
Sbjct: 370 MGIMLTNYQLRMDTLANVLYYPQKPLATTRA----------------------------- 400

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           M+YL+FR+LPAG N+IVAI+CY GYNQEDSVI+N S++ERG FR
Sbjct: 401 ----------------MDYLKFRDLPAGQNAIVAIMCYGGYNQEDSVIMNQSSIERGLFR 444

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S++FR+Y D E K    +   FEKP   T   +++  Y+KL+ DG+IAPG RV+GDD++I
Sbjct: 445 SLYFRTYHDEEDKLGSKELGTFEKPTPDTTLRLKHGTYEKLEGDGLIAPGTRVTGDDIII 504

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P +  EL   TK  SK D S  LR++E GIVDQVM+T N DG+KF K+R+RS R
Sbjct: 505 GKTTAIPPDSLELGQRTKSHSKIDASKALRSTECGIVDQVMMTTNGDGFKFVKVRIRSTR 564

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           +PQ+GDKFASRHGQKGT GI YR E                                   
Sbjct: 565 VPQMGDKFASRHGQKGTIGITYRTEDMPFSAEGIVPDIIINPHAIPSRMTVGHLVECLLS 624

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            +S+     GDATPF D V V+ IS  L  +GYQ RG EVM+NGHTGRK+ AQVFLGPTY
Sbjct: 625 KLSTLMASEGDATPFTD-VTVEAISRELLGHGYQPRGFEVMYNGHTGRKLAAQVFLGPTY 683

Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRF 363
           YQRLKHMVDDKIHSRARGP+QIL RQP+EGRARDGGLRF
Sbjct: 684 YQRLKHMVDDKIHSRARGPLQILTRQPVEGRARDGGLRF 722


>gi|40643899|emb|CAD89688.1| RNA polymerase II, second largest subunit [Ilex x meserveae]
          Length = 356

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 204/399 (51%), Positives = 254/399 (63%), Gaps = 84/399 (21%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+ +RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 6   MGMYVTNYQLRMDTLAYVLYYPQKPLVTTRA----------------------------- 36

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI C++GYNQEDS+I+N S+++RG+FR
Sbjct: 37  ----------------MEHLHFRQLPAGINAIVAIACHSGYNQEDSLIMNQSSIDRGFFR 80

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY+D E K     +E F  PN++   GMR+  YD+LDDDG   PG +VSGDDV+I
Sbjct: 81  SIFFRSYRDEEKKMGTLVKEDFGCPNKEDTMGMRHGSYDRLDDDGFAPPGTKVSGDDVII 140

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           G T   P  +D+ +G   R+++RD ST LR+SE GIVDQV+LT N DG +F K+R+RSVR
Sbjct: 141 GXTT--PIAQDDAQGQASRYTRRDHSTSLRHSEHGIVDQVLLTTNADGLRFVKVRMRSVR 198

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           +PQIGDKF+SRHGQ GT G+ Y QE                                   
Sbjct: 199 LPQIGDKFSSRHGQXGTVGMTYNQEDLPWTIEGITPDIIVNPHAIPSRMTIGQLIECIMG 258

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V+++ G+ GDATPF D V V  IS  L + GYQ+RG E  +NGHTGR+I A +FLGPTY
Sbjct: 259 KVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETTYNGHTGRQIPAMIFLGPTY 317

Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRF 363
           YQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGGLRF
Sbjct: 318 YQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRF 356


>gi|56694348|gb|AAW22914.1| RNA polymerase II second largest subunit [Cunninghamia lanceolata]
          Length = 550

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 206/392 (52%), Positives = 256/392 (65%), Gaps = 86/392 (21%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+ +RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 208 MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA----------------------------- 238

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 239 ----------------MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 282

Query: 121 SVFFRSYKDAESKRIGDQ-EEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+FFRSY+D E KR+G   +E+F +PNR+   GMR+  YDKLDDDG+  PG RVSG+DV+
Sbjct: 283 SLFFRSYRD-EEKRMGTLVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVI 341

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT   P  +D+  G   +++KRD ST LR+SE+G+VDQV+LT N DG +F K+R+RSV
Sbjct: 342 IGKTT--PIAQDDSGGQVSKYTKRDQSTSLRHSESGMVDQVLLTTNQDGLRFVKVRMRSV 399

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           RIPQIGDKF+SRHGQKGT G+ Y QE                                  
Sbjct: 400 RIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIM 459

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGRK++A +FLGPT
Sbjct: 460 GKVAAHMGKEGDATPFTD-VTVDSISKALHKCGYQMRGFETMYNGHTGRKLSAMIFLGPT 518

Query: 324 YYQRLKHMVDDKIHSRARGPVQILVRQPMEGR 355
           YYQRLKHMVDDKIHSR RGPVQIL RQP EGR
Sbjct: 519 YYQRLKHMVDDKIHSRGRGPVQILTRQPAEGR 550


>gi|56694356|gb|AAW22918.1| RNA polymerase II second largest subunit [Sequoiadendron giganteum]
          Length = 549

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 203/391 (51%), Positives = 253/391 (64%), Gaps = 84/391 (21%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+ +RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 207 MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA----------------------------- 237

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 238 ----------------MEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFR 281

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY+D E +     +E+F +PNR+   GMR+  YDKLDDDG+  PG RVSG+DV+I
Sbjct: 282 SLFFRSYRDEEKRAGTLVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 341

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT   P  +D+  G   +++KRD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVR
Sbjct: 342 GKTT--PIAQDDSAGQVSKYTKRDQSTSLRHSESGMVDQVLLTTNQDGLRFVKVRMRSVR 399

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 400 IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMG 459

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGRK++A +FLGPTY
Sbjct: 460 KVAAHMGKEGDATPFTD-VTVDSISKALHKCGYQMRGFETMYNGHTGRKLSAMIFLGPTY 518

Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGR 355
           YQRLKHMVDDKIHSR RGPVQIL RQP EGR
Sbjct: 519 YQRLKHMVDDKIHSRGRGPVQILTRQPAEGR 549


>gi|56694378|gb|AAW22929.1| RNA polymerase II second largest subunit [Musa velutina]
          Length = 561

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 202/391 (51%), Positives = 252/391 (64%), Gaps = 84/391 (21%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+ +RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 219 MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA----------------------------- 249

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQE SVI+N S+++RG+FR
Sbjct: 250 ----------------MEHLHFRQLPAGINAIVAIACYSGYNQEVSVIMNQSSIDRGFFR 293

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY+D E K     +E F +PNR+   GMR+  Y+KLDDDG+  PG RVSG+DV+I
Sbjct: 294 SLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYEKLDDDGLAPPGTRVSGEDVII 353

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P  +D+ +G   R+++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVR
Sbjct: 354 GKTSPIP--QDDAQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVR 411

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 412 IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMG 471

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGRK+ A +FLGPTY
Sbjct: 472 KVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRKLTAMIFLGPTY 530

Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGR 355
           YQRLKHMVDDKIHSR RGPVQIL RQP EGR
Sbjct: 531 YQRLKHMVDDKIHSRGRGPVQILTRQPAEGR 561


>gi|89274896|gb|ABD65889.1| RNA polymerase II second largest subunit, partial [Phaeolus
           schweinitzii]
          Length = 887

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 201/392 (51%), Positives = 255/392 (65%), Gaps = 82/392 (20%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF VRMDT+A++LYYP KPL TTR                              
Sbjct: 542 MGIYLTNFLVRMDTMANILYYPQKPLATTR------------------------------ 571

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYLRFRELPAG N+IVAILCY+GYNQEDSVI+N SA++RG FR
Sbjct: 572 ---------------SMEYLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSAIDRGLFR 616

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP R+    M++  YDKL+DDG+IAPG  V+G+D++I
Sbjct: 617 SMYYRSYMDLEKKSGIQQLEEFEKPTRENTLRMKHGTYDKLEDDGLIAPGTNVNGEDIII 676

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E+GI+DQV++T N +G KF KIRVRS R
Sbjct: 677 GKTAPIPPDSEELGQRTRAHTRRDVSTPLKSTESGIIDQVLITTNAEGQKFVKIRVRSTR 736

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           +PQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 737 VPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIVINPHAIPSRMTIGHLVECLLS 796

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF + + V+ +S +L++ GY  RG E+M++GHTGRK+ AQV+LGPTY
Sbjct: 797 KVATIIGNEGDATPFTE-LTVEGVSDVLRQKGYHSRGLEIMYHGHTGRKLQAQVYLGPTY 855

Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRA 356
           YQRLKHMVDDKIHSRARGPVQIL RQP+EGR+
Sbjct: 856 YQRLKHMVDDKIHSRARGPVQILTRQPVEGRS 887


>gi|6606121|gb|AAF19073.1|AF107801_1 DNA-dependent RNA polymerase II RPB140 [Stagonosporopsis
           cucurbitacearum]
          Length = 940

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 203/400 (50%), Positives = 254/400 (63%), Gaps = 84/400 (21%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV +TN+ +RM+T+ +VLYYP KPL TTR                              
Sbjct: 588 MGVALTNYALRMETMMNVLYYPQKPLATTR------------------------------ 617

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 618 ---------------SMEYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 662

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+R+Y + E KRIG +  EQFEKP R     ++   YDKLDDDG++APG+RVSGDD++
Sbjct: 663 SLFYRAYTEQE-KRIGVNVLEQFEKPTRADTLRLKGGTYDKLDDDGVVAPGVRVSGDDII 721

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  +  E+   T   +KRD ST LR++E GIVDQV+ T N +G +F K+R R+ 
Sbjct: 722 IGKTAPIAADAQEMGQKTSLHTKRDVSTPLRSTENGIVDQVLFTTNTEGLRFVKVRTRTT 781

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           ++PQIGDKFASRHGQKGT GI YR E                                  
Sbjct: 782 KVPQIGDKFASRHGQKGTIGITYRHEDMPFTRDGVTPDLVINPHAIPSRMTIAHLVECLL 841

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             V +  G  GDATPF D V V +IS LL++ GYQ RG E+M+NGHTG+K+  Q+FLGPT
Sbjct: 842 SKVGAITGREGDATPFTD-VTVDQISELLEDAGYQKRGFEIMYNGHTGKKMRTQIFLGPT 900

Query: 324 YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRF 363
           YYQRL+HMVDDKIH+RARGP+QIL RQP+EGRARDGGLRF
Sbjct: 901 YYQRLRHMVDDKIHARARGPLQILTRQPVEGRARDGGLRF 940


>gi|55273989|gb|AAV48865.1| RNA polymerase II second largest subunit [Amanita brunnescens]
          Length = 694

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 200/387 (51%), Positives = 251/387 (64%), Gaps = 82/387 (21%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF +RMDT+A++LYYP KPL TTR                              
Sbjct: 354 MGIYLTNFLIRMDTMANILYYPQKPLATTR------------------------------ 383

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 384 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 428

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP R T   M++  YDKL+DDG+IAPG  V+G+D++I
Sbjct: 429 SIYYRSYMDLEKKSGVQQLEEFEKPTRDTTLRMKHGTYDKLEDDGLIAPGTNVTGEDIII 488

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E+GIVDQV++T N +G KF K+RVRS R
Sbjct: 489 GKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRSTR 548

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 549 IPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDLIINPHAIPSRMTIGHLVECLLS 608

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D + V+ +ST L++ GYQ RG EVM++GHTGRK+ AQ++LGPTY
Sbjct: 609 KVATLIGNEGDATPFTD-LTVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQAQIYLGPTY 667

Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQP 351
           YQRLKHMVDDKIHSRARGPVQIL RQP
Sbjct: 668 YQRLKHMVDDKIHSRARGPVQILTRQP 694


>gi|55273999|gb|AAV48870.1| RNA polymerase II second largest subunit [Climacodon
           septentrionalis]
          Length = 886

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 201/391 (51%), Positives = 255/391 (65%), Gaps = 82/391 (20%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF VRMDT+A++LYYP KPL TTR                              
Sbjct: 542 MGIYLTNFLVRMDTMANILYYPQKPLATTR------------------------------ 571

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 572 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 616

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+F KP R+T   M++  YDK++DDG+IAPG  V+G+D++I
Sbjct: 617 SIYYRSYMDLEKKSGVQQLEEFGKPTRETTLRMKHGTYDKIEDDGLIAPGTGVNGEDIII 676

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + ++L   T++ ++RD ST L+++E+GI+DQV++T N +G KF KIRVRS R
Sbjct: 677 GKTAPIPPDSEKLGQRTRQHTRRDVSTPLKSTESGIIDQVLITTNAEGQKFVKIRVRSTR 736

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 737 IPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLS 796

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D + V+ +S  L++ GYQ RG EVM++GHTGRK+ AQV+LGPTY
Sbjct: 797 KVATLIGNEGDATPFTD-LTVESVSQFLRKEGYQSRGLEVMYHGHTGRKLQAQVYLGPTY 855

Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGR 355
           YQRLKHMVDDKIHSRARGPVQIL RQP+EGR
Sbjct: 856 YQRLKHMVDDKIHSRARGPVQILTRQPVEGR 886


>gi|6606103|gb|AAF19064.1|AF107792_1 DNA-dependent RNA polymerase II RPB140, partial [Microascus
           trigonosporus]
          Length = 937

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 203/400 (50%), Positives = 255/400 (63%), Gaps = 84/400 (21%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG ++TN+  RMDT+A++LYYP KPL TT +M                            
Sbjct: 585 MGFFLTNYMRRMDTMANILYYPQKPLATTMAM---------------------------- 616

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                            E+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 617 -----------------EHLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 659

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+FFRSY D E KR+G +  EQFEKP R     +++  YDKLD+DGI+APG+RVSG+D++
Sbjct: 660 SLFFRSYTDCE-KRVGINLLEQFEKPFRSETLRLKHGTYDKLDEDGIVAPGVRVSGEDII 718

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  L     EL   T + ++RD ST LR++E+GIVD V+ T N DG K+ K+RVR+ 
Sbjct: 719 IGKTSPLSPESQELGQRTTQHTQRDASTPLRSTESGIVDSVVFTTNADGMKYVKVRVRTT 778

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           ++PQIGDKFASRHGQKGT G+ YRQE                                  
Sbjct: 779 KVPQIGDKFASRHGQKGTIGVTYRQEDMPFTREGITPDIIINPHAIPSRMTIAHLIECLL 838

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             V++ KG  GDATPF D V V  +S LL+  GY  RG E+M+NGHTG+K+ AQVF GPT
Sbjct: 839 SKVATLKGLEGDATPFTD-VTVDSVSALLRAEGYHSRGFEIMYNGHTGKKLRAQVFFGPT 897

Query: 324 YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRF 363
           YYQRL+HMVDDKIH+RARGPVQI+ RQP+EGRARDGGLRF
Sbjct: 898 YYQRLRHMVDDKIHARARGPVQIMTRQPVEGRARDGGLRF 937


>gi|86559347|gb|ABD04081.1| RNA polymerase II second largest subunit, partial [Coniophora
           arida]
          Length = 711

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 202/387 (52%), Positives = 250/387 (64%), Gaps = 82/387 (21%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF VRMDT+A++LYYP KPL TTR                              
Sbjct: 371 MGIYLTNFLVRMDTMANILYYPQKPLATTR------------------------------ 400

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 401 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 445

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP R T   M++  YDK++DDG+IAPG  VSG+D++I
Sbjct: 446 SIYYRSYMDLEKKSGIQQLEEFEKPTRDTTLRMKHGTYDKIEDDGLIAPGTGVSGEDIII 505

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E GIVDQV++T N +G KF K+RVRS R
Sbjct: 506 GKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTR 565

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 566 IPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLS 625

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D + V+ +ST L++ GYQ RG EVM++GHTGRK+ AQV+LGPTY
Sbjct: 626 KVATLIGNEGDATPFTD-LTVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTY 684

Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQP 351
           YQRLKHMVDDKIHSRARGPVQIL RQP
Sbjct: 685 YQRLKHMVDDKIHSRARGPVQILTRQP 711


>gi|55273985|gb|AAV48863.1| RNA polymerase II second largest subunit [Coprinus comatus]
          Length = 699

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 199/388 (51%), Positives = 252/388 (64%), Gaps = 82/388 (21%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF +RMDT+A++LYYP KPL TTR                              
Sbjct: 358 MGIYLTNFLIRMDTMANILYYPQKPLATTR------------------------------ 387

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 388 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 432

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP R+T   M++  YDKL+DDG+IAPG  V G+D++I
Sbjct: 433 SIYYRSYMDLEKKSGIQQLEEFEKPTRETTLRMKHGTYDKLEDDGLIAPGTGVRGEDIII 492

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E+GIVDQV++T N +G KF K+RVR+ R
Sbjct: 493 GKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRATR 552

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 553 IPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLS 612

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D + V+ +ST L++ GYQ RG E+M++GHTGRK+ AQV+LGPTY
Sbjct: 613 KVATLIGNEGDATPFTD-LTVESVSTFLRQKGYQSRGLEIMYHGHTGRKLQAQVYLGPTY 671

Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPM 352
           YQRLKHMVDDKIHSRARGPVQIL RQP+
Sbjct: 672 YQRLKHMVDDKIHSRARGPVQILTRQPV 699


>gi|55583706|gb|AAV53372.1| RNA polymerase II second largest subunit [Suillus pictus]
          Length = 899

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 201/387 (51%), Positives = 250/387 (64%), Gaps = 82/387 (21%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF VRMDT+A++LYYP KPL TTR                              
Sbjct: 559 MGIYLTNFLVRMDTMANILYYPQKPLATTR------------------------------ 588

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 589 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 633

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP R T   M++  YDK++DDG+IAPG  VSG+D++I
Sbjct: 634 SIYYRSYMDLEKKSGVQQLEEFEKPTRDTTLRMKHGTYDKIEDDGLIAPGTGVSGEDIII 693

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E GIVDQV++T N +G KF K+RVRS R
Sbjct: 694 GKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTR 753

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 754 IPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDIVINPHAIPSRMTIGHLVECLLS 813

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D + V+ +ST L++ GYQ RG EVM++GHTG+K+ AQV+LGPTY
Sbjct: 814 KVATLIGNEGDATPFTD-LTVESVSTFLRQKGYQSRGLEVMYHGHTGKKLQAQVYLGPTY 872

Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQP 351
           YQRLKHMVDDKIHSRARGPVQIL RQP
Sbjct: 873 YQRLKHMVDDKIHSRARGPVQILTRQP 899


>gi|56694362|gb|AAW22921.1| RNA polymerase II second largest subunit [Pseudotsuga menziesii]
          Length = 554

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 205/392 (52%), Positives = 254/392 (64%), Gaps = 86/392 (21%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+ +RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 212 MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA----------------------------- 242

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 243 ----------------MEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFR 286

Query: 121 SVFFRSYKDAESKRIGDQ-EEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+FFRSY+D E KR+G   +E+F  PNR+    MR+  YDKLDDDG+  PG RVSG+DV+
Sbjct: 287 SLFFRSYRD-EEKRMGTLVKEEFGCPNRENTLNMRHGSYDKLDDDGLAPPGTRVSGEDVI 345

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT   P  ++E  G  +R+ +RD ST LR+SE+G+VDQV+LT N DG +F K+R+RSV
Sbjct: 346 IGKTT--PVTQEETSGQQQRYIRRDQSTSLRHSESGMVDQVLLTTNQDGLRFVKVRMRSV 403

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           RIPQIGDKF+SRHGQKGT G+ Y QE                                  
Sbjct: 404 RIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTSEGITPDIIVNPHAIPSRMTIGQLIECIM 463

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGRK++A +FLGPT
Sbjct: 464 GKVAAHMGKEGDATPFTD-VTVDSISKALHKCGYQMRGFETMYNGHTGRKLSAMIFLGPT 522

Query: 324 YYQRLKHMVDDKIHSRARGPVQILVRQPMEGR 355
           YYQRLKHMVDDKIHSR RGPVQIL RQP EGR
Sbjct: 523 YYQRLKHMVDDKIHSRGRGPVQILTRQPAEGR 554


>gi|258562146|gb|ACV81795.1| RNA polymerase II second largest subunit [Wallemia sebi]
          Length = 680

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 201/385 (52%), Positives = 248/385 (64%), Gaps = 82/385 (21%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TNF  RMDTL+++LYYP KPL TTR                              
Sbjct: 342 MGVHLTNFQQRMDTLSNILYYPQKPLATTR------------------------------ 371

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N SA++RG FR
Sbjct: 372 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSAIDRGLFR 416

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+F+RSY D E K      E+FEKP R+TC  M++  YDK+++DG+IAPG  V+GDD++I
Sbjct: 417 SIFYRSYMDTEKKVGTMLLEEFEKPTRETCLRMKHGTYDKIENDGLIAPGTAVTGDDIII 476

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   TK  +KRD ST L+++E GIVDQV++T N DG KF K+R+RS R
Sbjct: 477 GKTAPIPPDSEELGQRTKLHTKRDVSTPLKSTENGIVDQVLVTTNADGLKFSKVRMRSTR 536

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YR E                                   
Sbjct: 537 IPQIGDKFASRHGQKGTIGITYRNEDMPFTSDGITPDLIINPHAIPSRMTIGHLVECLLS 596

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++ +G  GDATPF + V V+ IS++L E GYQ RG EVM+NGHTGRK+ AQV++GPTY
Sbjct: 597 KVATLQGSEGDATPFTE-VTVESISSILHEKGYQKRGLEVMYNGHTGRKLQAQVYIGPTY 655

Query: 325 YQRLKHMVDDKIHSRARGPVQILVR 349
           YQRLKHMVDDKIH+RARGPVQIL R
Sbjct: 656 YQRLKHMVDDKIHARARGPVQILTR 680


>gi|89274890|gb|ABD65886.1| RNA polymerase II second largest subunit, partial [Ganoderma
           tsugae]
          Length = 883

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 200/387 (51%), Positives = 249/387 (64%), Gaps = 82/387 (21%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+++TNF +RMDT+A++LYYP KPL TTR                              
Sbjct: 543 MGIFLTNFLIRMDTMANILYYPQKPLATTR------------------------------ 572

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYLRFRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 573 ---------------SMEYLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 617

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP R T   M++  YDKL+DDG+IAPG  V+G+D++I
Sbjct: 618 SIYYRSYMDLEKKSGVQQLEEFEKPTRDTTLRMKHGTYDKLEDDGLIAPGTNVNGEDIII 677

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  +KRD ST L+++E GIVDQV++T N +G KF KIRVRS R
Sbjct: 678 GKTAPIPPDSEELGQRTRTHTKRDVSTPLKSTEQGIVDQVLITTNAEGQKFVKIRVRSTR 737

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 738 IPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLS 797

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            +++  G  GDATPF D + V+ +S  L++ GYQ RG E+M++GHTGRK+ AQV+LGPTY
Sbjct: 798 KLATLIGNEGDATPFTD-LTVESVSQFLRQKGYQSRGLEIMYHGHTGRKLQAQVYLGPTY 856

Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQP 351
           YQRLKHMVDDKIHSRARGPVQIL RQP
Sbjct: 857 YQRLKHMVDDKIHSRARGPVQILTRQP 883


>gi|55584694|gb|AAV53578.1| RNA polymerase II second largest subunit [Boletellus projectellus]
          Length = 899

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 199/387 (51%), Positives = 249/387 (64%), Gaps = 82/387 (21%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF VRMDT+A++LYYP KPL TTR                              
Sbjct: 559 MGIYLTNFLVRMDTMANILYYPQKPLATTR------------------------------ 588

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 589 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 633

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP R T   M++  YDK++DDG+IAPG  V G+D++I
Sbjct: 634 SIYYRSYMDLEKKSGVQQLEEFEKPTRDTTLRMKHGTYDKIEDDGLIAPGTNVRGEDIII 693

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E GIVDQV++T N +G KF K+RVRS R
Sbjct: 694 GKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTR 753

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 754 IPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDLIINPHAIPSRMTIGHLVECLLS 813

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D + V+ +ST L++ GYQ RG EVM++GHTG+K+ AQ++LGPTY
Sbjct: 814 KVATLIGNEGDATPFTD-LTVESVSTFLRQKGYQSRGLEVMYHGHTGKKLQAQIYLGPTY 872

Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQP 351
           YQRLKHMVDDKIHSRARGPVQIL RQP
Sbjct: 873 YQRLKHMVDDKIHSRARGPVQILTRQP 899


>gi|55273997|gb|AAV48869.1| RNA polymerase II second largest subunit [Clavaria zollingeri]
          Length = 694

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 198/387 (51%), Positives = 250/387 (64%), Gaps = 82/387 (21%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF +RMDT+A++LYYP KPL TTR                              
Sbjct: 354 MGIYLTNFLIRMDTMANILYYPQKPLATTR------------------------------ 383

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 384 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 428

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP R+T   M++  YDKL+ DG+IAPG  V GDD++I
Sbjct: 429 SIYYRSYMDLEKKSGVQQLEEFEKPTRETTLRMKHGNYDKLESDGLIAPGTGVRGDDIII 488

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  +KRD ST L+++E+G++DQV++T N +G KF K+R+RS R
Sbjct: 489 GKTAPIPPDSEELGQRTRSHTKRDVSTPLKSTESGVIDQVLITTNSEGQKFVKVRLRSTR 548

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           +PQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 549 VPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLS 608

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D + V+ +ST L++ GYQ RG EVM++GHTGRK+ AQV+LGPTY
Sbjct: 609 KVATLIGNEGDATPFTD-LTVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTY 667

Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQP 351
           YQRLKHMVDDKIHSRARGPVQIL RQP
Sbjct: 668 YQRLKHMVDDKIHSRARGPVQILTRQP 694


>gi|258562132|gb|ACV81788.1| RNA polymerase II second largest subunit [Agaricus bisporus]
          Length = 697

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 199/387 (51%), Positives = 249/387 (64%), Gaps = 82/387 (21%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF +RMDT+A++LYYP KPL TTR                              
Sbjct: 357 MGIYLTNFLIRMDTMANILYYPQKPLATTR------------------------------ 386

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 387 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 431

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP R T   M++  YDKL+DDG+IAPG  V G+D++I
Sbjct: 432 SIYYRSYMDLEKKSGIQQLEEFEKPTRDTTLRMKHGTYDKLEDDGLIAPGTGVRGEDIII 491

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E GIVDQV++T N +G KF K+RVR+ R
Sbjct: 492 GKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTEIGIVDQVLITTNSEGQKFVKVRVRATR 551

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 552 IPQIGDKFASRHGQKGTVGITYRQEDMPFTAEGIVPDLIINPHAIPSRMTIGHLVECLLS 611

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D + V+ +ST L++ GYQ RG EVM++GHTGRK+ AQ++LGPTY
Sbjct: 612 KVATLIGNEGDATPFTD-LTVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQAQIYLGPTY 670

Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQP 351
           YQRLKHMVDDKIHSRARGPVQIL RQP
Sbjct: 671 YQRLKHMVDDKIHSRARGPVQILTRQP 697


>gi|56694296|gb|AAW22888.1| RNA polymerase II second largest subunit [Psilotum nudum]
          Length = 573

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 198/391 (50%), Positives = 250/391 (63%), Gaps = 84/391 (21%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+ +RMDTLA+VL+YP KPLVTTR+                             
Sbjct: 231 MGIYVTNYQLRMDTLAYVLFYPQKPLVTTRA----------------------------- 261

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN++VAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 262 ----------------MEHLHFRQLPAGINAVVAIACYSGYNQEDSVIMNQSSIDRGFFR 305

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+F+RSY+D E K+    +E+FE+PNR+T   MR+  YDKL  DG+  PG RVSG+DV+I
Sbjct: 306 SIFYRSYRDEEXKQGTLVKEEFERPNRETXTNMRHGSYDKLXXDGLTPPGTRVSGEDVII 365

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT   P ++D+     +R+SKRD ST LR SE+G++DQV+LT N DG +F KIRVRS+R
Sbjct: 366 GKTT--PLSQDDTGNQAQRYSKRDQSTCLRXSESGMIDQVLLTTNADGLRFVKIRVRSIR 423

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           +PQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 424 VPQIGDKFSSRHGQKGTVGMTYTQEDMPWTQEGISPDIIVNPHAIPSRMTIGQLIECIMG 483

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V+++ G  GDATPF D V V  IS  L + GYQ+RG E M+NGHT R +NA +F+GPTY
Sbjct: 484 KVAAHMGREGDATPFTD-VTVDSISKALHKCGYQMRGFETMYNGHTXRXLNAMIFIGPTY 542

Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGR 355
           YQRLKHMVDDKIHSR RGPVQIL RQP EGR
Sbjct: 543 YQRLKHMVDDKIHSRGRGPVQILTRQPAEGR 573


>gi|55274001|gb|AAV48871.1| RNA polymerase II second largest subunit [Clitocybe subditopoda]
          Length = 693

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 198/387 (51%), Positives = 249/387 (64%), Gaps = 82/387 (21%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+++TNF +RMDT+A++LYYP KPL TTR                              
Sbjct: 353 MGIFLTNFLIRMDTMANILYYPQKPLATTR------------------------------ 382

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 383 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 427

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP R     M++  YDKL+DDG+IAPG  V+G+D++I
Sbjct: 428 SIYYRSYMDLEKKSGIQQLEEFEKPVRDNTLRMKHGTYDKLEDDGLIAPGTGVAGEDIII 487

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E+GIVDQV++T N +G KF K+RVRS R
Sbjct: 488 GKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRSTR 547

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQ GDKFASRHGQKGT GI YRQE                                   
Sbjct: 548 IPQTGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLS 607

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D + V+ +ST L++ GYQ RG EVM++GHTGRK+ AQV+LGPTY
Sbjct: 608 KVATLIGNEGDATPFTD-LTVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTY 666

Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQP 351
           YQRLKHMVDDKIHSRARGPVQIL RQP
Sbjct: 667 YQRLKHMVDDKIHSRARGPVQILTRQP 693


>gi|384096572|gb|AFH66782.1| RNA polymerase II second largest subunit, partial [Rhizidium
           endosporangiatum]
          Length = 911

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 205/396 (51%), Positives = 255/396 (64%), Gaps = 82/396 (20%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG++ TNFH RMDT+ ++L+YP KPL  TR                              
Sbjct: 562 MGIFNTNFHQRMDTMTNILFYPQKPLAATR------------------------------ 591

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYLRFRELPAG N+IVAI CY+GYNQEDS+I+N S+++RG FR
Sbjct: 592 ---------------SMEYLRFRELPAGQNAIVAIGCYSGYNQEDSLIMNQSSIDRGLFR 636

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++R Y D E K      E FEKP R +   +R+  Y+KLD+DGIIAPG+RVSG+D++I
Sbjct: 637 SLYYRVYMDTEKKEGLTTTETFEKPTRDSTLRLRHGTYEKLDEDGIIAPGVRVSGEDIII 696

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT+ +P + +EL   T   +KRD ST L+++E+GIVDQV++T N DG+KF K+RVRSVR
Sbjct: 697 GKTVPIPLDSEELGQRTSTHTKRDASTPLKSTESGIVDQVVVTTNHDGFKFVKVRVRSVR 756

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           +PQIGDKFASRHGQKGTCGI YR E                                   
Sbjct: 757 VPQIGDKFASRHGQKGTCGITYRMEDMPFTRDGITPDIIVNPHAIPSRMTIGHLVECLLG 816

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF  +VNV  IS  L  YG+Q RG EV++NGHTGRK+NAQ+F GPTY
Sbjct: 817 KVATMTGREGDATPFT-SVNVADISNELASYGFQQRGFEVLYNGHTGRKLNAQLFFGPTY 875

Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGG 360
           YQRLKHMVDDKIH RARGP+QILVRQP+EGR+RDGG
Sbjct: 876 YQRLKHMVDDKIHLRARGPMQILVRQPVEGRSRDGG 911


>gi|88976158|gb|ABD59039.1| RNA polymerase II second largest subunit, partial [Macrolepiota
           dolichaula]
          Length = 882

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 197/384 (51%), Positives = 248/384 (64%), Gaps = 82/384 (21%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+++TNF +RMDT+A++LYYP KPL TTR                              
Sbjct: 545 MGIFLTNFLIRMDTMANILYYPQKPLATTR------------------------------ 574

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 575 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 619

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP R+T   M++  YDKL+DDG+IAPG  V G+D++I
Sbjct: 620 SIYYRSYMDLEKKSGIQQLEEFEKPTRETTLRMKHGTYDKLEDDGLIAPGTGVRGEDIII 679

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E+GIVDQV++T N +G KF K+RVRS R
Sbjct: 680 GKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRSTR 739

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 740 IPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDLVINPHAIPSRMTIGHLVECLLS 799

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D + V+ +ST L++ GYQ RG EVM++GHTGRK+ AQV+LGPTY
Sbjct: 800 KVATLIGNEGDATPFTD-LTVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTY 858

Query: 325 YQRLKHMVDDKIHSRARGPVQILV 348
           YQRLKHMVDDKIHSRARGPVQIL 
Sbjct: 859 YQRLKHMVDDKIHSRARGPVQILT 882


>gi|120561261|gb|ABM27015.1| RNA polymerase II second largest subunit, partial [Allomyces
           macrogynus]
          Length = 896

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 197/392 (50%), Positives = 249/392 (63%), Gaps = 83/392 (21%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF +RMDTLA++LYYP KPLV TR                              
Sbjct: 552 MGLYLTNFQLRMDTLANILYYPQKPLVATR------------------------------ 581

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SM+YLRFRELPAG N++VAI  Y+GYNQEDS+I+N S+++RG FR
Sbjct: 582 ---------------SMKYLRFRELPAGQNAVVAIAVYSGYNQEDSIIMNQSSIDRGLFR 626

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++R+Y D E K      E FEKP R+T   +R+  YDK+++DG++APG RV+GDD++I
Sbjct: 627 SIYYRAYMDQEKKSGFSDVETFEKPARETTLKLRHGSYDKIEEDGLVAPGTRVTGDDIII 686

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  LP +  E+   T + +K+D ST L+++E GIVD VMLT N DGYKF K+RVRS R
Sbjct: 687 GKTAPLPPDTSEMGARTTQ-TKKDVSTSLKSTEQGIVDHVMLTTNNDGYKFVKVRVRSTR 745

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           +PQ+GDKFASRHGQKGT G+ YRQE                                   
Sbjct: 746 VPQMGDKFASRHGQKGTVGMTYRQEDMPFSADGVTPDLIVNPHAIPSRMTIGHLVECLLS 805

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V S  G  GDATPF D + VQ+I+  L+  GYQ RG E+M+NGHTG+K+ AQVF GPTY
Sbjct: 806 KVGSLTGTEGDATPFTD-ITVQEIADRLRSCGYQQRGFEIMYNGHTGKKLAAQVFFGPTY 864

Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRA 356
           YQRLKHMVDDKIHSRARGP+QIL RQP+EGR+
Sbjct: 865 YQRLKHMVDDKIHSRARGPLQILTRQPVEGRS 896


>gi|56694328|gb|AAW22904.1| RNA polymerase II second largest subunit [Ephedra distachya]
          Length = 551

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 200/391 (51%), Positives = 250/391 (63%), Gaps = 86/391 (21%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+ +RMDTLA+VLYYP  PLVTTR+                             
Sbjct: 211 MGIYVTNYQLRMDTLAYVLYYPQXPLVTTRA----------------------------- 241

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 242 ----------------MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 285

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY+D E K     +E F +P+R+   GMR+  YDKLD+DG+  PG RVSG+DV+I
Sbjct: 286 SLFFRSYRDEEKKMGSLVKEDFGRPSRENTAGMRHGSYDKLDEDGLAPPGTRVSGEDVII 345

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT   P  ++E  G   R+++RD ST +R+SE+G+VDQV+LT N DG +F KIR+RSVR
Sbjct: 346 GKTT--PVTQEESMG--GRYTRRDQSTSMRHSESGMVDQVLLTTNQDGLRFVKIRMRSVR 401

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 402 IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGVSPDIIVNPHAIPSRMTIGQLIECIMG 461

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGR++ A +FLGPTY
Sbjct: 462 KVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLPAMIFLGPTY 520

Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGR 355
           YQRLKHMVDDKIHSR RGPVQIL RQP EGR
Sbjct: 521 YQRLKHMVDDKIHSRGRGPVQILTRQPAEGR 551


>gi|40644724|emb|CAD92664.1| RNA polymerase II [Solanum lycopersicum]
          Length = 342

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 202/390 (51%), Positives = 245/390 (62%), Gaps = 84/390 (21%)

Query: 6   TNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILN 65
           TN+  RMDTLA+VLYYP KP VT R+                                  
Sbjct: 1   TNYQFRMDTLAYVLYYPQKPXVTXRA---------------------------------- 26

Query: 66  ASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFR 125
                      ME+L F +LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG FRS+FFR
Sbjct: 27  -----------MEHLHFXQLPAGINAIVAITCYSGYNQEDSVIMNQSSIDRGLFRSLFFR 75

Query: 126 SYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTIT 185
           SY+D E K     +E F +P+R+   GMR+  YDKL+DDG   PG RVSGDDV+IGKT  
Sbjct: 76  SYRDEEKKMGTLVKEDFGRPDREHTMGMRHGNYDKLEDDGFAPPGTRVSGDDVIIGKTT- 134

Query: 186 LPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIG 245
            P ++DE +G + R++++D ST LR+SETGIVDQV+LT N DG +F KIR+RSVRIPQIG
Sbjct: 135 -PISQDEAQGQSARYTRKDHSTSLRHSETGIVDQVLLTTNADGLRFVKIRMRSVRIPQIG 193

Query: 246 DKFASRHGQKGTCGIQYRQE------------------------------------VSSN 269
           DKF+SRHGQKGT G+ Y QE                                    V+++
Sbjct: 194 DKFSSRHGQKGTIGMTYTQEDMPWSAEGITPDIIVNPHAIPSRMTIGQLVECIMGKVAAH 253

Query: 270 KGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQRLK 329
            G+ GDATPF D V V  IS  L   GYQ+RG E M+NGHTGR + A +FLGPTYYQRLK
Sbjct: 254 IGKEGDATPFTD-VTVDSISRTLHNCGYQMRGFERMYNGHTGRVLPAMIFLGPTYYQRLK 312

Query: 330 HMVDDKIHSRARGPVQILVRQPMEGRARDG 359
           HMVDDKIHSR RGPVQIL RQP EGR+RDG
Sbjct: 313 HMVDDKIHSRGRGPVQILTRQPAEGRSRDG 342


>gi|40644545|emb|CAD88975.1| DNA-directed RNA polymerase subunit B [Myrtus communis]
          Length = 572

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 202/395 (51%), Positives = 245/395 (62%), Gaps = 87/395 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+  RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 228 MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA----------------------------- 258

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 259 ----------------MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 302

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY+D E K     +E F +P+R    GMR+  YDKLDDDG+  PG RVSG+DV+I
Sbjct: 303 SLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 362

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +        G   R+S+RD S  LR+SETGIVDQV+LT N DG +F K+RVRSVR
Sbjct: 363 GKTTPIAXXX-XXXGXASRYSRRDHSISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVR 421

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 422 IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIXCIMG 481

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGR++ A +FLGPTY
Sbjct: 482 KVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTY 540

Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDG 359
           YQRLKHMVDDKIHSR RGPVQIL RQ +    RDG
Sbjct: 541 YQRLKHMVDDKIHSRGRGPVQILTRQLL----RDG 571


>gi|349605440|gb|AEQ00676.1| DNA-directed RNA polymerase II subunit RPB2-like protein, partial
           [Equus caballus]
          Length = 251

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 181/251 (72%), Positives = 202/251 (80%), Gaps = 36/251 (14%)

Query: 237 RSVRIPQIGDKFASRHGQKGTCGIQYRQE------------------------------- 265
           RSVRIPQIGDKFASRHGQKGTCGIQYRQE                               
Sbjct: 1   RSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIE 60

Query: 266 -----VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFL 320
                VS+NKGEIGDATPFNDAVNVQKIS LL +YGY LRGNEV++NG TGRKI +Q+F+
Sbjct: 61  CLQGKVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFI 120

Query: 321 GPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFL 380
           GPTYYQRLKHMVDDKIHSRARGP+QIL RQPMEGR+RDGGLRFGEMERDCQI+HGAAQFL
Sbjct: 121 GPTYYQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFL 180

Query: 381 RERLFEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELM 440
           RERLFE SDPY++HVCN CG++AIAN R +T+EC+GC+NKTQIS VR+PYA KLLFQELM
Sbjct: 181 RERLFEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELM 240

Query: 441 SMNIAPRLMVV 451
           SM+IAPR+M V
Sbjct: 241 SMSIAPRMMSV 251


>gi|55583684|gb|AAV53361.1| RNA polymerase II second largest subunit [Flammulina velutipes]
          Length = 691

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 194/384 (50%), Positives = 245/384 (63%), Gaps = 82/384 (21%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+++TNF +RMDT+A++LYYP KPL TTR                              
Sbjct: 354 MGIFLTNFLIRMDTMANILYYPQKPLATTR------------------------------ 383

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+V+RG FR
Sbjct: 384 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSVDRGLFR 428

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K      E+FEKP R T   M++  YDKL+DDG+IAPG  V G+D++I
Sbjct: 429 SIYYRSYMDVEKKSGVQALEEFEKPQRDTTLRMKHGTYDKLEDDGLIAPGTGVRGEDIII 488

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E+GI+DQV++T N +G KF K+RVR+ R
Sbjct: 489 GKTAPIPPDSEELGQRTRLHTRRDVSTPLKSTESGIIDQVLITTNAEGQKFVKVRVRATR 548

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQ GDKFASRHGQKGT GI YRQE                                   
Sbjct: 549 IPQTGDKFASRHGQKGTIGITYRQEDMPFTCEGIVPDIIINPHAIPSRMTIGHLVECLLS 608

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D + V+ +ST L++ GYQ RG EVM++GHTGRK+ AQV+LGPTY
Sbjct: 609 KVATLIGHEGDATPFTD-LTVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTY 667

Query: 325 YQRLKHMVDDKIHSRARGPVQILV 348
           YQRLKHMVDDKIHSRARGPVQIL 
Sbjct: 668 YQRLKHMVDDKIHSRARGPVQILT 691


>gi|55583694|gb|AAV53366.1| RNA polymerase II second largest subunit [Marasmius alliaceus]
          Length = 705

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 193/380 (50%), Positives = 242/380 (63%), Gaps = 82/380 (21%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF +RMDT+A++LYYP KPL TTR                              
Sbjct: 372 MGIYLTNFLIRMDTMANILYYPQKPLATTR------------------------------ 401

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+V+RG FR
Sbjct: 402 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSVDRGLFR 446

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP R     M++  YDK++DDG+IAPG  V G+D++I
Sbjct: 447 SIYYRSYMDLEKKSGIQQLEEFEKPTRDNTLRMKHGTYDKIEDDGLIAPGTGVRGEDIII 506

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E+GIVDQV++T N +G KF K+RVRS R
Sbjct: 507 GKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRSTR 566

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           +PQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 567 VPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLS 626

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D + V+ +S  L++ GYQ RG EVMF+GHTGRK+ AQV+LGPTY
Sbjct: 627 KVATLIGNEGDATPFTD-LTVESVSMFLRQKGYQSRGLEVMFHGHTGRKLQAQVYLGPTY 685

Query: 325 YQRLKHMVDDKIHSRARGPV 344
           YQRLKHMVDDKIHSRARGPV
Sbjct: 686 YQRLKHMVDDKIHSRARGPV 705


>gi|258562140|gb|ACV81792.1| RNA polymerase II second largest subunit [Ramaria stricta]
          Length = 679

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 193/381 (50%), Positives = 241/381 (63%), Gaps = 82/381 (21%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF VRMDT+A++LYYP KPL TTR                              
Sbjct: 345 MGIYLTNFLVRMDTMANILYYPQKPLATTR------------------------------ 374

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 375 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 419

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E      Q E+F KP R T   M++  YDKL+DDG+IAPG  V G+D++I
Sbjct: 420 SMYYRSYMDMEKTSGIHQLEEFSKPTRDTTLRMKHGTYDKLEDDGLIAPGTGVRGEDIII 479

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P   +EL   T   ++RD ST L+++E+GIVDQV++T N DG++F K+RVRS R
Sbjct: 480 GKTAPIPPESEELGQKTSNHTRRDVSTPLKSTESGIVDQVLITTNSDGHRFVKVRVRSTR 539

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQ GDKFASRHGQKGT GI YRQE                                   
Sbjct: 540 IPQTGDKFASRHGQKGTIGITYRQEDMPFTVEGITPDIIINPHAIPSRMTIGHLVECLLS 599

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF + + V+ +STLL++ GY  RG EVM++GHTGRK+ AQV+LGPTY
Sbjct: 600 KVATLIGNEGDATPFTE-LTVESVSTLLRKQGYHSRGLEVMYHGHTGRKLQAQVYLGPTY 658

Query: 325 YQRLKHMVDDKIHSRARGPVQ 345
           YQRLKHMVDDKIHSRARGPVQ
Sbjct: 659 YQRLKHMVDDKIHSRARGPVQ 679


>gi|55583690|gb|AAV53364.1| RNA polymerase II second largest subunit [Grifola sordulenta]
          Length = 712

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 196/379 (51%), Positives = 240/379 (63%), Gaps = 82/379 (21%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF VRMDT+A++LYYP KPL TTR                              
Sbjct: 380 MGIYLTNFLVRMDTMANILYYPQKPLATTR------------------------------ 409

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYLRFRELPAG N+IVAILCY+GYNQEDSVI+N S+V+RG FR
Sbjct: 410 ---------------SMEYLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSVDRGLFR 454

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E FEKP R T   M++  YDKL+DDG+IAPG  V+G+D++I
Sbjct: 455 SMYYRSYMDLEKKSGVQQVEAFEKPTRDTTLRMKHGTYDKLEDDGLIAPGTNVNGEDIII 514

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +  + +EL   T+  +KRD ST L+++E GI+DQV++T N +G KF KIRVRS R
Sbjct: 515 GKTAPIAPDSEELGQRTRTHTKRDVSTPLKSTEQGIIDQVLITTNAEGQKFVKIRVRSTR 574

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 575 IPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLS 634

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D + V+ +S  L++ GYQ RG EVM++GHTGRK+ AQV+LGPTY
Sbjct: 635 KVATLIGNEGDATPFTD-LTVESVSQFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTY 693

Query: 325 YQRLKHMVDDKIHSRARGP 343
           YQRLKHMVDDKIHSRARGP
Sbjct: 694 YQRLKHMVDDKIHSRARGP 712


>gi|83415447|gb|ABC17931.1| RNA polymerase II second largest subunit precursor, partial
           [Coelomomyces stegomyiae]
          Length = 1080

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 197/373 (52%), Positives = 238/373 (63%), Gaps = 83/373 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGVY+TNF +RMDTLA++LYYP KPLVTTR+                             
Sbjct: 367 MGVYLTNFQLRMDTLANILYYPQKPLVTTRN----------------------------- 397

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           M+YLRFRELPAG N+IVAI  Y+GYNQEDS+I++ SA++RG FR
Sbjct: 398 ----------------MQYLRFRELPAGQNAIVAIAAYSGYNQEDSLIMSQSAIDRGLFR 441

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY DAE K    Q E+FE+P R+T   +R   Y+KL+DDG +APG RV+GDD++I
Sbjct: 442 SIYYRSYVDAEKKTGFTQLEEFERPTRETTLKLRQGSYEKLEDDGFVAPGTRVNGDDIII 501

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  LP +  EL GT    +K+D ST L++SE GIVD VM+T N DGYKF KIRVRS R
Sbjct: 502 GKTAPLPMDHSEL-GTRTTQTKKDVSTGLKSSENGIVDHVMVTTNGDGYKFVKIRVRSTR 560

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           +PQIGDKFASRHGQKGT G+ YRQE                                   
Sbjct: 561 VPQIGDKFASRHGQKGTVGMTYRQEDMPFTAEGLTPDLIINPHAIPSRMTIGHLVECLLG 620

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            VSS  G  GDATPF D V VQ+IS LL+E GYQ RG EVM+NGHTG+K++AQ+FLGPTY
Sbjct: 621 KVSSLTGSEGDATPFTD-VTVQQISDLLRECGYQQRGFEVMYNGHTGKKLSAQIFLGPTY 679

Query: 325 YQRLKHMVDDKIH 337
           YQRLKHMVDDKIH
Sbjct: 680 YQRLKHMVDDKIH 692



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/27 (77%), Positives = 26/27 (96%)

Query: 337  HSRARGPVQILVRQPMEGRARDGGLRF 363
            +SR+RGP+QIL RQP+EGR+RDGGLRF
Sbjct: 1054 NSRSRGPLQILTRQPVEGRSRDGGLRF 1080


>gi|55584696|gb|AAV53579.1| RNA polymerase II second largest subunit [Collybia tuberosa]
          Length = 700

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 191/379 (50%), Positives = 242/379 (63%), Gaps = 82/379 (21%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+++TNF +RMDT+A++LYYP KPL TTR                              
Sbjct: 368 MGIFLTNFLIRMDTMANILYYPQKPLATTR------------------------------ 397

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 398 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 442

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP R     M++  YDKL+DDG+IAPG  V+G+D++I
Sbjct: 443 SIYYRSYMDLEKKSGVQQLEEFEKPVRDNTLRMKHGTYDKLEDDGLIAPGTGVAGEDIII 502

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E+GIVDQV++T N +G KF K+RVRS R
Sbjct: 503 GKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRSTR 562

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQ GDKFASRHGQKGT GI YRQE                                   
Sbjct: 563 IPQTGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLS 622

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D + V+ +ST L++ GYQ RG EVM++GHTGRK+ AQV+LGPTY
Sbjct: 623 KVATLIGNEGDATPFTD-LTVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTY 681

Query: 325 YQRLKHMVDDKIHSRARGP 343
           YQRLKHMVDDKIHSRARGP
Sbjct: 682 YQRLKHMVDDKIHSRARGP 700


>gi|2736117|gb|AAB94059.1| RPB140 [Hordeum vulgare]
          Length = 555

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 191/373 (51%), Positives = 239/373 (64%), Gaps = 84/373 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+ +RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 231 MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA----------------------------- 261

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 262 ----------------MEHLLFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 305

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY+D E K     +E+F +PNR+   GMR+  YDKLDDDG+  PG RVSG+DV+I
Sbjct: 306 SLFFRSYRDEEKKMGTLVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 365

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P  +D+ +G   R+SKRD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVR
Sbjct: 366 GKTSPIP--QDDAQGQATRYSKRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVR 423

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 424 IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGITPDIIVNPHAIPSRMTIGQLIECIMG 483

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGRK+ A +FLGPTY
Sbjct: 484 KVAAHMGKEGDATPFTD-VTVDHISKALHKCGYQMRGFETMYNGHTGRKLTAMIFLGPTY 542

Query: 325 YQRLKHMVDDKIH 337
           YQRLKHMVDDKIH
Sbjct: 543 YQRLKHMVDDKIH 555


>gi|2736127|gb|AAB94064.1| RPB140 [Marchantia polymorpha]
          Length = 555

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 189/373 (50%), Positives = 240/373 (64%), Gaps = 84/373 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+ +RMDTLA+VLYYP KPLVTT++M +                          
Sbjct: 231 MGIYVTNYQLRMDTLAYVLYYPQKPLVTTQAMAH-------------------------- 264

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                              L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 265 -------------------LHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 305

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+F+RSY+D E K+    +E+FE+PNR+   GMR+  YDKLDDDG+  PG RVSG+DV+I
Sbjct: 306 SIFYRSYRDEEKKQGTLVKEEFERPNRENTTGMRHGSYDKLDDDGLAPPGTRVSGEDVII 365

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  LP  +DE     +R++KRD ST LR+SE+G++DQV+LT N DG +F KIRVRS+R
Sbjct: 366 GKTTPLP--QDETGSQAQRYTKRDQSTCLRHSESGMIDQVLLTTNADGLRFVKIRVRSIR 423

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 424 IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTQEGITPDIIVNPHAIPSRMTIGQLIECIMG 483

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V+++ G+ GDATPF D V V  IS  L + GYQ+RG EVM+NGHTGR++ A +FLGPTY
Sbjct: 484 KVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFEVMYNGHTGRRLYAHIFLGPTY 542

Query: 325 YQRLKHMVDDKIH 337
           YQRLKHMVDDKIH
Sbjct: 543 YQRLKHMVDDKIH 555


>gi|40643905|emb|CAD89691.1| RNA polymerase II, second largest subunit [Escallonia sp. Oxelman
           2340]
          Length = 508

 Score =  369 bits (947), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 193/373 (51%), Positives = 235/373 (63%), Gaps = 84/373 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF  RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 162 MGIYVTNFQFRMDTLAYVLYYPQKPLVTTRA----------------------------- 192

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+V+RG+FR
Sbjct: 193 ----------------MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSVDRGFFR 236

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY+D E K     +E F +P+R    GMR+  YDKLDDDG+  PG RVSG+DV+I
Sbjct: 237 SLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 296

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT   P  +D+ +G   R+SKRD ST LR+SETG+VDQV+LT N DG +F K+RVRSVR
Sbjct: 297 GKTT--PIAQDDAQGQASRYSKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVR 354

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 355 IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTAEGITPDIIVNPHAIPSRMTIGQLIECIMG 414

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGR++ A +FLGPTY
Sbjct: 415 KVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTY 473

Query: 325 YQRLKHMVDDKIH 337
           YQRLKHMVDDKIH
Sbjct: 474 YQRLKHMVDDKIH 486


>gi|40644039|emb|CAD92460.1| RNA polymerase II [Escallonia sp. Oxelman 2340]
          Length = 543

 Score =  369 bits (946), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 193/373 (51%), Positives = 235/373 (63%), Gaps = 84/373 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF  RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 219 MGIYVTNFQFRMDTLAYVLYYPQKPLVTTRA----------------------------- 249

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+V+RG+FR
Sbjct: 250 ----------------MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSVDRGFFR 293

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY+D E K     +E F +P+R    GMR+  YDKLDDDG+  PG RVSG+DV+I
Sbjct: 294 SLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 353

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT   P  +D+ +G   R+SKRD ST LR+SETG+VDQV+LT N DG +F K+RVRSVR
Sbjct: 354 GKTT--PIAQDDAQGQASRYSKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVR 411

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 412 IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTAEGITPDIIVNPHAIPSRMTIGQLIECIMG 471

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGR++ A +FLGPTY
Sbjct: 472 KVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTY 530

Query: 325 YQRLKHMVDDKIH 337
           YQRLKHMVDDKIH
Sbjct: 531 YQRLKHMVDDKIH 543


>gi|120561247|gb|ABM27008.1| RNA polymerase II second largest subunit, partial [Furculomyces
           boomerangus]
          Length = 906

 Score =  369 bits (946), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 191/388 (49%), Positives = 241/388 (62%), Gaps = 82/388 (21%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+ +T++ +RMDTL+++LYYP KPL TT S                             
Sbjct: 565 MGIMLTSYQLRMDTLSNILYYPQKPLATTHS----------------------------- 595

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           MEY++F +LPAG N++VAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 596 ----------------MEYIKFSDLPAGQNAVVAILCYSGYNQEDSVIMNQSSIDRGLFR 639

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+F+R+Y+D E ++       FE+P R+T   +++  Y+KL+DDG+IAPG RV+GDD++I
Sbjct: 640 SMFYRTYQDEEDRQGMKTMGTFERPTRETTLRLKHGTYEKLEDDGLIAPGTRVTGDDIII 699

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P +  EL   T   +K D S  LR++ETGIVDQVMLT N DG+KF K+RVRS R
Sbjct: 700 GKTTPIPIDSIELGQRTVTHTKLDASKPLRSTETGIVDQVMLTTNGDGFKFVKVRVRSTR 759

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           +PQIGDKFASRHGQKGT GI YR E                                   
Sbjct: 760 VPQIGDKFASRHGQKGTIGITYRTEDMPFTSEGVVPDLIINPHAIPSRMTIGHLVECLLS 819

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            +++  G   DATPF D V V+ IS  L   GYQ RG EVM+NGHTGRK+ AQVFLGPTY
Sbjct: 820 KLATLIGTTADATPFTD-VTVEAISRELFSLGYQSRGFEVMYNGHTGRKLQAQVFLGPTY 878

Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPM 352
           YQRLKHMVDDKIHSRARGPVQIL  QP+
Sbjct: 879 YQRLKHMVDDKIHSRARGPVQILTSQPV 906


>gi|2736121|gb|AAB94061.1| RPB140 [Magnolia virginiana]
          Length = 555

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 189/373 (50%), Positives = 240/373 (64%), Gaps = 84/373 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+ +RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 231 MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA----------------------------- 261

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 262 ----------------MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 305

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY+D E K     +E F +PNR++  GMR+  YDKLDDDG+  PG RVSG+DV+I
Sbjct: 306 SLFFRSYRDEEKKMGTLVKEDFGRPNRESTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 365

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKTI  P  +D+++G   R+++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVR
Sbjct: 366 GKTI--PIAQDDVQGQVTRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVR 423

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 424 IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTPEGITPDIIVNPHAIPSRMTIGQLIECIMG 483

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGR++ A +FLGPTY
Sbjct: 484 KVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLPAMIFLGPTY 542

Query: 325 YQRLKHMVDDKIH 337
           YQRLKHMVDDKIH
Sbjct: 543 YQRLKHMVDDKIH 555


>gi|3002819|gb|AAC08937.1| RPB140 [Chloranthus spicatus]
          Length = 533

 Score =  368 bits (944), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 189/373 (50%), Positives = 237/373 (63%), Gaps = 84/373 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+ +RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 209 MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA----------------------------- 239

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 240 ----------------MEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFR 283

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY+D E K     +E F +PNR+   GMR+  YDKLDDDG+  PG RVSG+DV+I
Sbjct: 284 SLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 343

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT   P  +DE +G   R+++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVR
Sbjct: 344 GKTT--PIAQDETQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVR 401

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           +PQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 402 VPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMG 461

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGRK+ A +FLGPTY
Sbjct: 462 KVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRKLTAMIFLGPTY 520

Query: 325 YQRLKHMVDDKIH 337
           YQRLKHMVDDKIH
Sbjct: 521 YQRLKHMVDDKIH 533


>gi|55583700|gb|AAV53369.1| RNA polymerase II second largest subunit [Pluteus romellii]
          Length = 646

 Score =  367 bits (943), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 188/376 (50%), Positives = 242/376 (64%), Gaps = 82/376 (21%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+++TNF +RMDT+A++LYYP KPL TTR                              
Sbjct: 317 MGIFLTNFLIRMDTMANILYYPQKPLATTR------------------------------ 346

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 347 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 391

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP+R+T   M++  YDKL+DDG+IAPG  V G+D++I
Sbjct: 392 SIYYRSYMDLEKKSGIQQLEEFEKPSRETTLRMKHGTYDKLEDDGLIAPGTGVRGEDIII 451

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E+GIVDQV+LT N +G KF K+RVRS R
Sbjct: 452 GKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTESGIVDQVLLTTNSEGQKFVKVRVRSTR 511

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           +PQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 512 VPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDLVINPHAIPSRMTIGHLVECLLS 571

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D + V+ +S+ L++ GYQ RG EVM++GHTG+K+ AQV+LGPTY
Sbjct: 572 KVATLIGNEGDATPFTD-LTVEAVSSFLRQKGYQSRGLEVMYHGHTGKKLQAQVYLGPTY 630

Query: 325 YQRLKHMVDDKIHSRA 340
           YQRLKHMVDDKIHSRA
Sbjct: 631 YQRLKHMVDDKIHSRA 646


>gi|45545345|gb|AAS67520.1| DNA-dependent RNA polymerase II second largest subunit, partial
           [Pneumocystis carinii]
          Length = 898

 Score =  367 bits (941), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 193/370 (52%), Positives = 238/370 (64%), Gaps = 84/370 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           +GV++TN+ VRMDT+A++LYYP KPL TTR                              
Sbjct: 576 IGVFLTNYQVRMDTMANILYYPQKPLATTR------------------------------ 605

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYLRFRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 606 ---------------SMEYLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 650

Query: 121 SVFFRSYKDAESKRIGDQ-EEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+RSY D E K+IG Q  E+FEKP R  C  +++  YDK++DDG+IAPG RVSGDD++
Sbjct: 651 SIFYRSYMDQE-KKIGMQIMEEFEKPMRNNCLKLKHGTYDKIEDDGLIAPGTRVSGDDII 709

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +P N +EL   TK  +KRD ST LR++E+GI+DQVM++ N +G KF K+R+RS 
Sbjct: 710 IGKTAPIPPNAEELGQRTKFHTKRDVSTPLRSTESGIIDQVMVSTNAEGLKFVKVRMRST 769

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           RIPQIGDKFASRHGQKGT GI YR E                                  
Sbjct: 770 RIPQIGDKFASRHGQKGTIGITYRHEDMPFTSEGIVPDIIINPHAIPSRMTVAHLIECLL 829

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VS+  G  GDATPF D V V+ IS +L+++GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 830 SKVSALSGYEGDATPFTD-VTVEAISKMLRQHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 888

Query: 324 YYQRLKHMVD 333
           YYQRLKHMVD
Sbjct: 889 YYQRLKHMVD 898


>gi|89274916|gb|ABD65899.1| RNA polymerase II second largest subunit, partial [Peniophora nuda]
          Length = 561

 Score =  366 bits (940), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 191/378 (50%), Positives = 239/378 (63%), Gaps = 82/378 (21%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF VRMDT+A++LYYP KPL TTR                              
Sbjct: 230 MGIYLTNFLVRMDTMANILYYPQKPLATTR------------------------------ 259

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 260 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 304

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP R T   M++  YDKL+DDG+IAPG  V+G D++I
Sbjct: 305 SIYYRSYMDLEKKSGVQQLEEFEKPTRDTTLHMKHGTYDKLEDDGMIAPGTGVNGGDIII 364

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  LP + +EL    +  ++RD ST L+++E+GIVDQV++T N +G KF KIRVRS R
Sbjct: 365 GKTAPLPVDSEELGQRNRLHTRRDVSTPLKSTESGIVDQVLITTNHEGQKFVKIRVRSTR 424

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQ GDKFASRHGQKGT GI YRQE                                   
Sbjct: 425 IPQTGDKFASRHGQKGTIGITYRQEDMPFTSEGIVPDIIINPHAIPSRMTIGHLVECLLS 484

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D + V+ +ST L++ GY  RG E+M++GHTGRK+ AQV+LGPTY
Sbjct: 485 KVATLIGNEGDATPFTD-LTVESVSTFLRQQGYHSRGLEIMYHGHTGRKLQAQVYLGPTY 543

Query: 325 YQRLKHMVDDKIHSRARG 342
           YQRLKHMVDDKIH+RARG
Sbjct: 544 YQRLKHMVDDKIHARARG 561


>gi|46277259|gb|AAS86820.1| RNA polymerase II second largest subunit, partial [Trochodendron
           aralioides]
          Length = 547

 Score =  366 bits (940), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 189/373 (50%), Positives = 237/373 (63%), Gaps = 84/373 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+ +RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 223 MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA----------------------------- 253

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 254 ----------------MEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFR 297

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY+D E K     +E F +PNR+   GMR+  YDKLDDDG+  PG RVSG+DV+I
Sbjct: 298 SLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 357

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT   P  +DE +G   R+++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVR
Sbjct: 358 GKTT--PIAQDESQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVR 415

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 416 IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTAEGITPDIIVNPHAIPSRMTIGQLIECIMG 475

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGR++ A +FLGPTY
Sbjct: 476 KVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTY 534

Query: 325 YQRLKHMVDDKIH 337
           YQRLKHMVDDKIH
Sbjct: 535 YQRLKHMVDDKIH 547


>gi|46277249|gb|AAS86815.1| RNA polymerase II second largest subunit, partial [Selaginella
           densa]
          Length = 547

 Score =  366 bits (940), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 189/373 (50%), Positives = 239/373 (64%), Gaps = 84/373 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+ +RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 223 MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA----------------------------- 253

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 254 ----------------MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 297

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+F+RSY+D E K+    +E+FEKP+R + + MR+  Y+KLDDDGI  PG RVSG+DV+I
Sbjct: 298 SIFYRSYRDEERKQGTLVKEEFEKPSRDSTKDMRHGSYEKLDDDGITPPGTRVSGEDVII 357

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT   P  +DE     +R++KRD ST LR+SE+G+VDQV+LT N DG +F KIRVRS+R
Sbjct: 358 GKTT--PLGQDETGAQAQRYTKRDQSTSLRHSESGMVDQVLLTTNADGLRFVKIRVRSIR 415

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 416 IPQIGDKFSSRHGQKGTVGMTYTQEDMPFTQEGITPDIIVNPHAIPSRMTIGQLIECIMG 475

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGRK++A +F+GPTY
Sbjct: 476 KVAALMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRKLSAMIFIGPTY 534

Query: 325 YQRLKHMVDDKIH 337
           YQRLKHMVDDKIH
Sbjct: 535 YQRLKHMVDDKIH 547


>gi|88976120|gb|ABD59034.1| RNA polymerase II second largest subunit, partial [Clitocybe
           candicans]
          Length = 563

 Score =  366 bits (939), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 189/377 (50%), Positives = 240/377 (63%), Gaps = 82/377 (21%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+++TNF +RMDT+A++LYYP KPL TTR                              
Sbjct: 233 MGIFLTNFLIRMDTMANILYYPQKPLATTR------------------------------ 262

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 263 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 307

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP R     M++  YDKL+DDG+IAPG  V+G+D++I
Sbjct: 308 SIYYRSYMDLEKKSGIQQLEEFEKPVRDNTLRMKHGTYDKLEDDGLIAPGTGVAGEDIII 367

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E+GIVDQV++T N +G KF K+RVRS R
Sbjct: 368 GKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRSTR 427

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQ GDKFASRHGQKGT GI YRQE                                   
Sbjct: 428 IPQTGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLS 487

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D + V+ +ST L++ GYQ RG EVM++GHTGRK+ AQV+LGPTY
Sbjct: 488 KVATLIGNEGDATPFTD-LTVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTY 546

Query: 325 YQRLKHMVDDKIHSRAR 341
           YQRLKHMVDDKIHSRAR
Sbjct: 547 YQRLKHMVDDKIHSRAR 563


>gi|3002939|gb|AAC08960.1| RNA polymerase II second largest subunit [Peperomia caperata]
          Length = 554

 Score =  366 bits (939), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 189/373 (50%), Positives = 238/373 (63%), Gaps = 84/373 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+ +RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 230 MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA----------------------------- 260

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 261 ----------------MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 304

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY+D E K     +E F +PNR+   GMR+  YDKLDDDG+  PG RVSG+DV+I
Sbjct: 305 SLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 364

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GK  T P  +DE +G   R+++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVR
Sbjct: 365 GK--TSPIAQDESQGQASRYNRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVR 422

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 423 IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTAEGITPDIIVNQHAIPSRMTIGQLIECIMG 482

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGR+++A +FLGPTY
Sbjct: 483 KVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTY 541

Query: 325 YQRLKHMVDDKIH 337
           YQRLKHMVDDKIH
Sbjct: 542 YQRLKHMVDDKIH 554


>gi|40644998|emb|CAD89358.1| RNA polymerase II, second largest subunit [Vitis piasezkii]
          Length = 551

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 188/373 (50%), Positives = 238/373 (63%), Gaps = 84/373 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+ +RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 227 MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA----------------------------- 257

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 258 ----------------MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 301

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY+D E K     +E F +PNR+   GMR+  YDKLDDDG+  PG RVSG+DV+I
Sbjct: 302 SLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 361

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT   P ++D+ +G   R+++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVR
Sbjct: 362 GKTT--PISQDDSQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVR 419

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 420 IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMG 479

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGR++ A +FLGPTY
Sbjct: 480 KVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTY 538

Query: 325 YQRLKHMVDDKIH 337
           YQRLKHMVDDKIH
Sbjct: 539 YQRLKHMVDDKIH 551


>gi|86559341|gb|ABD04078.1| RNA polymerase II second largest subunit, partial [Aureoboletus
           thibetanus]
          Length = 692

 Score =  365 bits (938), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 188/374 (50%), Positives = 237/374 (63%), Gaps = 82/374 (21%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF VRMDT+A++LYYP KPL TTR                              
Sbjct: 365 MGIYLTNFLVRMDTMANILYYPQKPLATTR------------------------------ 394

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 395 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 439

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP R T   M++  YDKL+DDG+IAPG  V G+D++I
Sbjct: 440 SIYYRSYMDLEKKSGVQQLEEFEKPTRDTTLRMKHGTYDKLEDDGLIAPGTNVRGEDIII 499

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E GIVDQV++T N +G KF K+RVRS R
Sbjct: 500 GKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTR 559

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 560 IPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDLVINPHAIPSRMTIGHLVECLLS 619

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D + V+ +ST L++ GYQ RG EVM++GHTG+K+ AQ++LGPTY
Sbjct: 620 KVATLIGNEGDATPFTD-LTVESVSTFLRQKGYQSRGLEVMYHGHTGKKLQAQIYLGPTY 678

Query: 325 YQRLKHMVDDKIHS 338
           YQRLKHMVDDKIHS
Sbjct: 679 YQRLKHMVDDKIHS 692


>gi|56694326|gb|AAW22903.1| RNA polymerase II second largest subunit [Dioon edule]
          Length = 538

 Score =  365 bits (938), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 191/374 (51%), Positives = 241/374 (64%), Gaps = 86/374 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+ +RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 214 MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA----------------------------- 244

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 245 ----------------MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 288

Query: 121 SVFFRSYKDAESKRIGDQ-EEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+RSY+D E KR+G   +E+F +PNR+   GMR+  YDKLDDDG+  PG RVSG+DV+
Sbjct: 289 SLFYRSYRD-EEKRMGTLVKEEFGRPNRENTTGMRHGSYDKLDDDGLAPPGTRVSGEDVI 347

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT   P  +DE  G   R++KRD ST LR+SE+G+VDQV+LT N DG +F K+R+RSV
Sbjct: 348 IGKTT--PVTQDESGGQAARYTKRDQSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSV 405

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           RIPQIGDKF+SRHGQKGT G+ Y QE                                  
Sbjct: 406 RIPQIGDKFSSRHGQKGTVGMTYCQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIM 465

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGR+++A +FLGPT
Sbjct: 466 GKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPT 524

Query: 324 YYQRLKHMVDDKIH 337
           YYQRLKHMVDDKIH
Sbjct: 525 YYQRLKHMVDDKIH 538


>gi|3002941|gb|AAC08961.1| RNA polymerase II second largest subunit [Nymphaea odorata]
          Length = 555

 Score =  365 bits (936), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 188/373 (50%), Positives = 239/373 (64%), Gaps = 84/373 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+ +RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 231 MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA----------------------------- 261

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 262 ----------------MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 305

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY+D E K     +E F +PNR+   GMR+  YDKLDDDG+  PG RVSG+DV+I
Sbjct: 306 SLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 365

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GK  T P ++D+ +G   R+++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVR
Sbjct: 366 GK--TSPISQDDSQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVR 423

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 424 IPQIGDKFSSRHGQKGTVGMTYCQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMG 483

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGR+++A +FLGPTY
Sbjct: 484 KVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTY 542

Query: 325 YQRLKHMVDDKIH 337
           YQRLKHMVDDKIH
Sbjct: 543 YQRLKHMVDDKIH 555


>gi|120561249|gb|ABM27009.1| RNA polymerase II second largest subunit, partial [Mucor hiemalis]
          Length = 884

 Score =  364 bits (935), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 193/368 (52%), Positives = 229/368 (62%), Gaps = 82/368 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGVY+TNF  RMDTLA++LYYP KPL TTR                              
Sbjct: 563 MGVYLTNFQTRMDTLANILYYPQKPLTTTR------------------------------ 592

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+LRFRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 593 ---------------SMEFLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 637

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFR+Y DAE K      E+FEKP R +   +++  Y+KL+DDG+IAPG RVSGDD++I
Sbjct: 638 SLFFRTYMDAEKKAGMMFMEEFEKPTRDSTLRLKHGTYEKLEDDGLIAPGTRVSGDDIII 697

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T   +KRD ST LR++ETGIVDQVMLT N DG KF K+RVRS R
Sbjct: 698 GKTAPIPADSEELGQRTTTHNKRDASTPLRSTETGIVDQVMLTTNQDGLKFVKVRVRSTR 757

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           +PQ+GDKFASRHGQKGT G+ YRQE                                   
Sbjct: 758 VPQMGDKFASRHGQKGTIGMTYRQEDFPFSAEGITPDLIINPHAIPSRMTIGHMIECLLG 817

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            VS+  G  GDATPF D V V+ IS  LQ  GYQ RG EVM+NG TGRK+N QVFLGPTY
Sbjct: 818 KVSTLTGNEGDATPFTD-VTVEAISQALQAQGYQSRGFEVMYNGFTGRKLNVQVFLGPTY 876

Query: 325 YQRLKHMV 332
           YQRLKHMV
Sbjct: 877 YQRLKHMV 884


>gi|58758743|gb|AAW81770.1| RNA polymerase II second largest subunit [Fibulorhizoctonia sp.
           LA082103L]
          Length = 576

 Score =  364 bits (934), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 187/377 (49%), Positives = 239/377 (63%), Gaps = 82/377 (21%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+++TNF +RMDT+A++LYYP KPL TTR                              
Sbjct: 246 MGIFLTNFLIRMDTMANILYYPQKPLATTR------------------------------ 275

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+V+RG FR
Sbjct: 276 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSVDRGLFR 320

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP R+    M++  YDK++DDG+IAPG  VSG+D++I
Sbjct: 321 SIYYRSYMDLEKKSGIQQLEEFEKPTRENTLRMKHGTYDKIEDDGLIAPGTGVSGEDIII 380

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E GIVDQV++T N +G KF K+RVR+ R
Sbjct: 381 GKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRATR 440

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQ GDKFASRHGQKGT GI YRQE                                   
Sbjct: 441 IPQTGDKFASRHGQKGTVGITYRQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLIECLLS 500

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D + V+ +S  L++ GYQ RG EVM++GH+GRK+ AQV+LGPTY
Sbjct: 501 KVATLIGNEGDATPFTD-LTVESVSAFLRQKGYQSRGLEVMYHGHSGRKLQAQVYLGPTY 559

Query: 325 YQRLKHMVDDKIHSRAR 341
           YQRLKHMVDDKIHSRAR
Sbjct: 560 YQRLKHMVDDKIHSRAR 576


>gi|56694358|gb|AAW22919.1| RNA polymerase II second largest subunit [Metasequoia
           glyptostroboides]
          Length = 533

 Score =  364 bits (934), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 188/373 (50%), Positives = 238/373 (63%), Gaps = 84/373 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+ +RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 209 MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA----------------------------- 239

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 240 ----------------MEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFR 283

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY+D E +     +E+F +PNR+   GMR+  YDKLDDDG+  PG RVSG+DV+I
Sbjct: 284 SLFFRSYRDEEKRAGTLVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 343

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT   P  +D+  G   +++KRD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVR
Sbjct: 344 GKTT--PIAQDDSAGQVSKYTKRDQSTSLRHSESGMVDQVLLTTNQDGLRFVKVRMRSVR 401

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 402 IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMG 461

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGRK++A +FLGPTY
Sbjct: 462 KVAAHMGKEGDATPFTD-VTVDSISKALHKCGYQMRGFETMYNGHTGRKLSAMIFLGPTY 520

Query: 325 YQRLKHMVDDKIH 337
           YQRLKHMVDDKIH
Sbjct: 521 YQRLKHMVDDKIH 533


>gi|410610283|gb|AFV74910.1| RNA polymerase II second largest subunit, partial [Champereia
           manillana]
          Length = 482

 Score =  363 bits (933), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 191/371 (51%), Positives = 233/371 (62%), Gaps = 84/371 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+  RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 160 MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA----------------------------- 190

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 191 ----------------MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 234

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY+D E K     +E F +PNR    GMR+  YDKLDDDG+  PG RVSG+DV+I
Sbjct: 235 SLFFRSYRDEEKKMGTLVKEDFGRPNRMDTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 294

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GK  T P  +DE +G   R++KRD ST LR+SETGIVDQV+LT N DG +F K+RVRSVR
Sbjct: 295 GK--TSPIAQDESQGQASRYTKRDHSTSLRHSETGIVDQVLLTTNADGLRFVKVRVRSVR 352

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 353 IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMG 412

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGR++ A +FLGPTY
Sbjct: 413 KVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTY 471

Query: 325 YQRLKHMVDDK 335
           YQRLKHMVDDK
Sbjct: 472 YQRLKHMVDDK 482


>gi|56694322|gb|AAW22901.1| RNA polymerase II second largest subunit [Stangeria eriopus]
          Length = 538

 Score =  363 bits (933), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 191/374 (51%), Positives = 241/374 (64%), Gaps = 86/374 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+ +RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 214 MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA----------------------------- 244

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 245 ----------------MEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFR 288

Query: 121 SVFFRSYKDAESKRIGDQ-EEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+RSY+D E KR+G   +E+F +PNR+   GMR+  YDKLDDDG+  PG RVSG+DV+
Sbjct: 289 SLFYRSYRD-EEKRMGTLIKEEFGRPNRENTIGMRHGSYDKLDDDGLAPPGTRVSGEDVI 347

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT   P  +DE  G   R++KRD ST LR+SE+G+VDQV+LT N DG +F K+R+RSV
Sbjct: 348 IGKTT--PVTQDESGGQAARYTKRDQSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSV 405

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           RIPQIGDKF+SRHGQKGT G+ Y QE                                  
Sbjct: 406 RIPQIGDKFSSRHGQKGTVGMTYCQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIM 465

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGR+++A +FLGPT
Sbjct: 466 GKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPT 524

Query: 324 YYQRLKHMVDDKIH 337
           YYQRLKHMVDDKIH
Sbjct: 525 YYQRLKHMVDDKIH 538


>gi|56694372|gb|AAW22926.1| RNA polymerase II second largest subunit [Illicium anisatum]
          Length = 539

 Score =  363 bits (932), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 185/373 (49%), Positives = 238/373 (63%), Gaps = 85/373 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+ +RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 216 MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA----------------------------- 246

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 247 ----------------MEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFR 290

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY+D E K     +E F +PNR+   GMR+  YDKLDDDG+  PG RVSG+DV+I
Sbjct: 291 SLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 350

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  + ++E   +G   R+++RD ST LR+SE+G++DQV+LT N DG +F K+R+RSVR
Sbjct: 351 GKTTPIAQDE---QGQASRYTRRDHSTCLRHSESGMIDQVLLTTNADGLRFVKVRMRSVR 407

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           +PQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 408 VPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMG 467

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGR+++A +FLGPTY
Sbjct: 468 KVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTY 526

Query: 325 YQRLKHMVDDKIH 337
           YQRLKHMVDDKIH
Sbjct: 527 YQRLKHMVDDKIH 539


>gi|56694350|gb|AAW22915.1| RNA polymerase II second largest subunit [Cephalotaxus fortunei]
          Length = 533

 Score =  363 bits (932), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 191/373 (51%), Positives = 240/373 (64%), Gaps = 86/373 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+ +RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 210 MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA----------------------------- 240

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 241 ----------------MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 284

Query: 121 SVFFRSYKDAESKRIGDQ-EEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+FFRSY+D E KR+G   +E+F +PNR+   GMR+  YDKLDDDG+  PG RVSG+DV+
Sbjct: 285 SLFFRSYRD-EEKRMGTLVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVI 343

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT   P  +DE  G   +++KRD ST LR+SE+G+VDQV+LT N DG +F K+R+RSV
Sbjct: 344 IGKTT--PIAQDESGGQVSKYTKRDQSTSLRHSESGMVDQVLLTTNQDGLRFVKVRMRSV 401

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           RIPQIGDKF+SRHGQKGT G+ Y QE                                  
Sbjct: 402 RIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIM 461

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGRK++A +FLGPT
Sbjct: 462 GKVAAHMGKEGDATPFTD-VTVDSISKALHKCGYQMRGFETMYNGHTGRKLSAMIFLGPT 520

Query: 324 YYQRLKHMVDDKI 336
           YYQRLKHMVDDKI
Sbjct: 521 YYQRLKHMVDDKI 533


>gi|40644549|emb|CAD89106.1| RNA polymerase II, second largest subunit [Tephrosia purpurea]
          Length = 550

 Score =  362 bits (928), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 188/373 (50%), Positives = 235/373 (63%), Gaps = 84/373 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+  RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 224 MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA----------------------------- 254

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 255 ----------------MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 298

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY+D E K     +E F +P+R    GMR+  YDKLDDDG+  PG RVSG+DV+I
Sbjct: 299 SLFFRSYRDEEKKMGTLVKEDFCRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 358

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT   P +++E +G   R+++RD S  LR+SETGIVDQV+LT N DG +F K+RVRSVR
Sbjct: 359 GKTT--PISQEEAQGQASRYTRRDHSISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVR 416

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 417 IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECVMG 476

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGR++ + +FLGPTY
Sbjct: 477 KVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTSMIFLGPTY 535

Query: 325 YQRLKHMVDDKIH 337
           YQRLKHMVDDKIH
Sbjct: 536 YQRLKHMVDDKIH 548


>gi|47208444|emb|CAF93098.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1217

 Score =  362 bits (928), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 187/295 (63%), Positives = 207/295 (70%), Gaps = 75/295 (25%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGVYITNFHVRMDTLAHVLYYP KPLVTTR                              
Sbjct: 706 MGVYITNFHVRMDTLAHVLYYPQKPLVTTR------------------------------ 735

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYLRFRELPAGINSIVAI  YTGYNQEDSVI+N SAV+RG+FR
Sbjct: 736 ---------------SMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFR 780

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           SVF+RSYK+ ESK+  DQEE FEKP R+TCQGMR+AIY+KLDDDG+IAPG+RVSG+DV+I
Sbjct: 781 SVFYRSYKEQESKKGFDQEEIFEKPTRETCQGMRHAIYEKLDDDGLIAPGVRVSGEDVII 840

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIR----- 235
           GKT+TLPENEDEL+GT +R++KRD STFLR SETGIVDQVM+TLN +GYKFCKIR     
Sbjct: 841 GKTVTLPENEDELDGTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVSRRH 900

Query: 236 -------------------------VRSVRIPQIGDKFASRHGQKGTCGIQYRQE 265
                                    VRSVRIPQIGDKFASRHGQKGTCGIQYRQE
Sbjct: 901 LHLTRLRSSPGFKPSRMLSHSCSLQVRSVRIPQIGDKFASRHGQKGTCGIQYRQE 955



 Score =  340 bits (873), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 151/186 (81%), Positives = 173/186 (93%)

Query: 265  EVSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            +VS+NKGEIGDATPFNDAVNVQK+S LL EYGY LRGNEV++NG TGRK+ +Q+F+GPTY
Sbjct: 1031 QVSANKGEIGDATPFNDAVNVQKVSNLLSEYGYHLRGNEVLYNGFTGRKLTSQIFIGPTY 1090

Query: 325  YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
            YQRLKHMVDDKIHSRARGPVQIL RQPMEGR+RDGGLRFGEMERDCQI+HGAAQFL+ERL
Sbjct: 1091 YQRLKHMVDDKIHSRARGPVQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLKERL 1150

Query: 385  FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
            FE SDPY++HVCN CGL+AIAN R +T+EC+GC+NKTQIS VR+PYA KLLFQELMSM+I
Sbjct: 1151 FEASDPYQVHVCNLCGLMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSI 1210

Query: 445  APRLMV 450
            APR+M 
Sbjct: 1211 APRMMT 1216


>gi|56694300|gb|AAW22890.1| RNA polymerase II second largest subunit [Anemia phyllitidis]
          Length = 549

 Score =  360 bits (925), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 185/372 (49%), Positives = 237/372 (63%), Gaps = 84/372 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+ +RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 226 MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA----------------------------- 256

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR LPAGIN++VAI CY+GYNQEDSVI+N S+V+RG+FR
Sbjct: 257 ----------------MEHLHFRHLPAGINAVVAIACYSGYNQEDSVIMNQSSVDRGFFR 300

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+F+RSY+D E K+    +E+FE+PNR+   GMR+  Y+KLDDDG+  PG RVSG+DV+I
Sbjct: 301 SIFYRSYRDEEKKQGTLVKEEFERPNREATLGMRHGSYEKLDDDGLAPPGTRVSGEDVII 360

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  LP  +D+     +R+SKRD ST LR+SE+G++DQV+LT N +G +F KIRVRS+R
Sbjct: 361 GKTTPLP--QDDTGSQAQRYSKRDQSTCLRHSESGMIDQVLLTTNSEGLRFVKIRVRSIR 418

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 419 IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTQEGITPDIIVNPHAIPSRMTIGQLIECIMG 478

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V+++ G+ GDATPF D V V  IS  L   GYQ+RG E M+NGH+GR+++A +FLGPTY
Sbjct: 479 KVAAHMGKEGDATPFTD-VTVDNISKALHRCGYQMRGFETMYNGHSGRRLSAMIFLGPTY 537

Query: 325 YQRLKHMVDDKI 336
           YQR KHMVDDKI
Sbjct: 538 YQRPKHMVDDKI 549


>gi|56694360|gb|AAW22920.1| RNA polymerase II second largest subunit [Larix occidentalis]
          Length = 534

 Score =  360 bits (924), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 191/374 (51%), Positives = 239/374 (63%), Gaps = 86/374 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+ +RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 210 MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA----------------------------- 240

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 241 ----------------MEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFR 284

Query: 121 SVFFRSYKDAESKRIGDQ-EEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+FFRSY+D E KR+G   +E+F  PNR+    MR+  YDKLDDDG+  PG RVSG+DV+
Sbjct: 285 SLFFRSYRD-EEKRMGTLVKEEFGCPNRENTLNMRHGSYDKLDDDGLAPPGTRVSGEDVI 343

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT   P  ++E  G  +R+ KRD ST LR+SE+G+VDQV+LT N DG +F K+R+RSV
Sbjct: 344 IGKTT--PVAQEETTGQQQRYIKRDQSTSLRHSESGMVDQVLLTTNQDGLRFVKVRMRSV 401

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           RIPQIGDKF+SRHGQKGT G+ Y QE                                  
Sbjct: 402 RIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTSEGITPDIIVNPHAIPSRMTIGQLIECIM 461

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGRK++A +FLGPT
Sbjct: 462 GKVAAHMGKEGDATPFTD-VTVDSISKALHKCGYQMRGFETMYNGHTGRKLSAMIFLGPT 520

Query: 324 YYQRLKHMVDDKIH 337
           YYQRLKHMVDDKIH
Sbjct: 521 YYQRLKHMVDDKIH 534


>gi|410610273|gb|AFV74905.1| RNA polymerase II second largest subunit, partial [Santalum album]
          Length = 486

 Score =  359 bits (922), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 189/370 (51%), Positives = 231/370 (62%), Gaps = 84/370 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+  RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 165 MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA----------------------------- 195

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 196 ----------------MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 239

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY+D E K     +E F +PNR    GMR+  YDKLDDDG+  PG RVSG+DV+I
Sbjct: 240 SLFFRSYRDEEKKMGTLVKEDFGRPNRMDTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 299

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GK  T P  +DE +G   R++KRD ST LR+SETGIVDQV+LT N DG +F K+RVRSVR
Sbjct: 300 GK--TSPIAQDESQGQASRYTKRDHSTSLRHSETGIVDQVLLTTNADGLRFVKVRVRSVR 357

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKF+SRHGQKGT G+ Y  E                                   
Sbjct: 358 IPQIGDKFSSRHGQKGTVGMTYTXEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMG 417

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGR++ A +FLGPTY
Sbjct: 418 KVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTY 476

Query: 325 YQRLKHMVDD 334
           YQRLKHMVDD
Sbjct: 477 YQRLKHMVDD 486


>gi|56694330|gb|AAW22905.1| RNA polymerase II second largest subunit [Welwitschia mirabilis]
          Length = 553

 Score =  359 bits (921), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 191/374 (51%), Positives = 240/374 (64%), Gaps = 88/374 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+ +RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 231 MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA----------------------------- 261

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 262 ----------------MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 305

Query: 121 SVFFRSYKDAESKRIGDQ-EEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+FFRSY+D E KR+G   +E+F +P+R    GMR+  YDKLDDDG+  PG RVSG+DV+
Sbjct: 306 SLFFRSYRD-EEKRMGTLVKEEFGRPSRDNTAGMRHGSYDKLDDDGLAPPGTRVSGEDVI 364

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT   P N+DE  G   R+++RD ST +R+SE+G+VDQV+LT N DG +F KIR+RSV
Sbjct: 365 IGKTT--PTNQDENAG--GRYTRRDQSTSMRHSESGMVDQVLLTTNQDGLRFVKIRMRSV 420

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           RIPQIGDKF+SRHGQKGT G+ Y QE                                  
Sbjct: 421 RIPQIGDKFSSRHGQKGTVGMTYCQEDMPWTIEGITPDIIVNPHAIPSRMTIGQLIECIM 480

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGR++ A +FLGPT
Sbjct: 481 GKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPT 539

Query: 324 YYQRLKHMVDDKIH 337
           YYQRLKHMVDDKIH
Sbjct: 540 YYQRLKHMVDDKIH 553


>gi|45120568|gb|AAO64656.2| RNA polymerase II subunit RPB2, partial [Echinodontium tinctorium]
          Length = 871

 Score =  359 bits (921), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 187/374 (50%), Positives = 237/374 (63%), Gaps = 82/374 (21%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF VRMDT+A++LYYP KPL TTR                              
Sbjct: 544 MGIYLTNFLVRMDTMANILYYPQKPLATTR------------------------------ 573

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 574 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 618

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP R T   M++  YDK+++DG+IAPG  V+G D++I
Sbjct: 619 SIYYRSYMDMEKKAGVQQVEEFEKPTRDTTLHMKHGTYDKIENDGLIAPGTGVNGADIII 678

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  LP + +EL   ++  ++RD ST L+++E+GIVDQV++T N +G+KF KIRVRS R
Sbjct: 679 GKTAPLPVDSEELGQRSRLHTRRDVSTPLKSTESGIVDQVLVTTNHEGHKFVKIRVRSTR 738

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 739 IPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLS 798

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D + V+ +S  L + GYQ RG EVM++GHTGRK+ AQV+LGPTY
Sbjct: 799 KVATLIGNEGDATPFTD-LTVESVSKFLLQQGYQSRGLEVMYHGHTGRKLQAQVYLGPTY 857

Query: 325 YQRLKHMVDDKIHS 338
           YQRLKHMVDDKIH+
Sbjct: 858 YQRLKHMVDDKIHA 871


>gi|119644183|gb|ABL85611.1| RNA polymerase II second largest subunit [Phaeophyscia orbicularis]
          Length = 718

 Score =  359 bits (921), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 190/373 (50%), Positives = 236/373 (63%), Gaps = 84/373 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+  RM+T++H+LYYP KPL TTR                              
Sbjct: 393 MGVFLTNYDQRMETMSHILYYPQKPLATTR------------------------------ 422

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 423 ---------------SMEYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 467

Query: 121 SVFFRSYKDAESKRIGDQE-EQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+RSY D E KR+G    EQFEKP R     +++  YDKLDDDGII PG RVSGDDV+
Sbjct: 468 SLFYRSYTDQE-KRVGTNVLEQFEKPMRADTLKLKHGTYDKLDDDGIIIPGARVSGDDVI 526

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK  +KRD ST LR++E+G+VDQV+LT N +G +F K+R+R+ 
Sbjct: 527 IGKTAPISPDAEELGQRTKLHTKRDASTPLRSTESGLVDQVLLTTNAEGLRFVKVRMRTT 586

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 587 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGLVPDLIINPHAIPSRMTIAHLIECQL 646

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             V+S +G  GDATPF + + V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 647 SKVASLRGLEGDATPFTE-ITVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 705

Query: 324 YYQRLKHMVDDKI 336
           YYQRL+HMVDDKI
Sbjct: 706 YYQRLRHMVDDKI 718


>gi|113957191|gb|ABI49106.1| RNA polymerase II second largest subunit [Diploschistes
           cinereocaesius]
          Length = 709

 Score =  358 bits (920), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 193/373 (51%), Positives = 237/373 (63%), Gaps = 84/373 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TNF  RMDT+A++LYYP KPL TTR                              
Sbjct: 384 MGVFLTNFDERMDTMANILYYPQKPLATTR------------------------------ 413

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 414 ---------------SMEFLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 458

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+R+Y + E KR+G    EQFEKP R     +++  Y+KLDDDG+IAPG+RVSG+DV+
Sbjct: 459 SLFYRAYVEQE-KRVGMSLVEQFEKPLRSETLRLKHGTYEKLDDDGLIAPGVRVSGEDVI 517

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + DEL   TK  SKRD ST LR++E GIVD+V+LT N +G KF K+R+R+ 
Sbjct: 518 IGKTAPIAPDTDELGQRTKLHSKRDASTPLRSTENGIVDKVLLTTNQEGLKFVKVRMRTT 577

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 578 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDLIINPHAIPSRMTIAHLIECQL 637

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF D V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVF GPT
Sbjct: 638 SKVSSLRGFEGDATPFTD-VTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLRAQVFFGPT 696

Query: 324 YYQRLKHMVDDKI 336
           YYQRL+HMVDDKI
Sbjct: 697 YYQRLRHMVDDKI 709


>gi|52699882|gb|AAU87002.1| DNA-dependent RNA polymerase II second largest subunit [Sporastatia
           testudinea]
          Length = 700

 Score =  358 bits (920), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 192/373 (51%), Positives = 236/373 (63%), Gaps = 84/373 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 373 MGVFLTNYDQRMDTMANILYYPQKPLATTR------------------------------ 402

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 403 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 447

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+RSY D E KR+G    EQFEKP R     +++  YDKLDDDGI+APG+RVSG+D+V
Sbjct: 448 SLFYRSYTDQE-KRVGMSIVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIV 506

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK   KRD ST LR++E GIVDQV+LT N +G +F K+R+R+ 
Sbjct: 507 IGKTAPIAPDAEELGQRTKLHVKRDASTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTT 566

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 567 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQL 626

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 627 SKVSSLRGFEGDATPFTE-VTVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 685

Query: 324 YYQRLKHMVDDKI 336
           YYQRL+HMVDDKI
Sbjct: 686 YYQRLRHMVDDKI 698


>gi|56694334|gb|AAW22907.1| RNA polymerase II second largest subunit [Araucaria araucana]
          Length = 523

 Score =  358 bits (920), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 191/374 (51%), Positives = 238/374 (63%), Gaps = 86/374 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+ +RMDTLA+ LYYP KPLVTTR+                             
Sbjct: 199 MGIYVTNYQLRMDTLAYXLYYPQKPLVTTRA----------------------------- 229

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 230 ----------------MEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFR 273

Query: 121 SVFFRSYKDAESKRIGDQ-EEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+FFRSY+D E KR+G   +E+F +PNR+   G R+   DKLD+DG+  PG RVSG+DV+
Sbjct: 274 SLFFRSYRD-EEKRMGTLVKEEFGRPNRENTXGXRHGSXDKLDEDGLAPPGTRVSGEDVI 332

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT   P  +DE  G   RFS+RD ST LR+SE+G+VDQV+LT N DG +F KIR+RSV
Sbjct: 333 IGKTT--PITQDEQGGQLSRFSRRDQSTSLRHSESGMVDQVLLTTNQDGLRFVKIRMRSV 390

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           RIPQIGDKF+SRHGQKGT G+ Y QE                                  
Sbjct: 391 RIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIM 450

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGRK++A +FLGPT
Sbjct: 451 GKVAAHMGKEGDATPFTD-VTVDSISKALHKCGYQMRGFETMYNGHTGRKLSAMIFLGPT 509

Query: 324 YYQRLKHMVDDKIH 337
           YYQRLKHMVDDKIH
Sbjct: 510 YYQRLKHMVDDKIH 523


>gi|56694340|gb|AAW22910.1| RNA polymerase II second largest subunit [Saxegothaea conspicua]
          Length = 526

 Score =  358 bits (920), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 188/374 (50%), Positives = 240/374 (64%), Gaps = 86/374 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+ +RMD LA+VLYYP KPLVTTR+                             
Sbjct: 202 MGIYVTNYQLRMDXLAYVLYYPQKPLVTTRA----------------------------- 232

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 233 ----------------MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 276

Query: 121 SVFFRSYKDAESKRIGDQ-EEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+FFRSY+D E KR+G   +E+F +PNR+   GMR+  YDKLDDDG+  PG RVSG+DV+
Sbjct: 277 SLFFRSYRD-EEKRMGTLVKEEFGRPNRENTTGMRHGSYDKLDDDGLAPPGTRVSGEDVI 335

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT   P +++E      ++++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RSV
Sbjct: 336 IGKTT--PVSQEESGNQISKYTRRDQSTSLRHSESGMVDQVLLTTNQDGLRFVKVRMRSV 393

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           RIPQIGDKF+SRHGQKGT G+ Y QE                                  
Sbjct: 394 RIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIM 453

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGRK++A +FLGPT
Sbjct: 454 GKVAAHMGKEGDATPFTD-VTVDSISKALHKCGYQMRGFETMYNGHTGRKLSAMIFLGPT 512

Query: 324 YYQRLKHMVDDKIH 337
           YYQRLKHMVDDKIH
Sbjct: 513 YYQRLKHMVDDKIH 526


>gi|40644547|emb|CAD88888.1| DNA-directed RNA polymerase subunit B [Gymnosporia arbutifolia]
          Length = 459

 Score =  358 bits (920), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 187/373 (50%), Positives = 234/373 (62%), Gaps = 84/373 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+  RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 135 MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA----------------------------- 165

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+V+RG+FR
Sbjct: 166 ----------------MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSVDRGFFR 209

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY+D E K     +E F +P+R +  GMR+  YDKLDDDG+  PG RVSG+DV+I
Sbjct: 210 SLFFRSYRDEEKKMGTLVKEDFGRPDRASTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 269

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT   P  +++ +G   R+++RD S  LR+SETG+VDQV+LT N DG +  K+RVRSVR
Sbjct: 270 GKTT--PITQEDAQGQGSRYTRRDHSISLRHSETGMVDQVLLTTNADGLRSVKVRVRSVR 327

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 328 IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECLMG 387

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGR++ A +FLGPTY
Sbjct: 388 KVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTY 446

Query: 325 YQRLKHMVDDKIH 337
           YQRLKHMVDDKIH
Sbjct: 447 YQRLKHMVDDKIH 459


>gi|110704328|gb|ABG88064.1| RNA polymerase II second largest subunit [Microbotryum violaceum]
          Length = 699

 Score =  358 bits (919), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 191/373 (51%), Positives = 232/373 (62%), Gaps = 82/373 (21%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+ VRMDT+A+VLYYP KPL TTR                              
Sbjct: 373 MGVFLTNYQVRMDTMANVLYYPQKPLATTR------------------------------ 402

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL FRELPAG N+IVAI+CY+GYNQEDSVILN S+++RG FR
Sbjct: 403 ---------------SMEYLHFRELPAGQNAIVAIMCYSGYNQEDSVILNQSSIDRGLFR 447

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S ++RSY D E K    Q E+FEKP R T   +++  Y+KL+ DGII  G RV+G+D++I
Sbjct: 448 SFYYRSYMDQEKKSGAIQMEEFEKPTRDTTLRLKHGTYEKLEADGIIGLGERVAGEDIII 507

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  LP + +EL    K  +KRD ST L+++E GIVDQV++T N DG KF KIRVRS R
Sbjct: 508 GKTAPLPPDSEELGQRLKNHTKRDVSTPLKSTENGIVDQVLVTTNQDGLKFVKIRVRSTR 567

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IP+IGDKFASRHGQKGT GI YR E                                   
Sbjct: 568 IPEIGDKFASRHGQKGTIGITYRHEDMPFSAEGTIPDIIINPHAIPSRMTIGHLVECLLS 627

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            VS+  G  GDATPF++ V V+ ISTLL+E GY  RG EVM+NGHTGRK+ AQV+LGPTY
Sbjct: 628 KVSTISGNEGDATPFSE-VTVEAISTLLKEMGYHSRGLEVMYNGHTGRKLQAQVYLGPTY 686

Query: 325 YQRLKHMVDDKIH 337
           YQRLKHMV+DKIH
Sbjct: 687 YQRLKHMVNDKIH 699


>gi|46277255|gb|AAS86818.1| RNA polymerase II second largest subunit, partial [Gnetum gnemon]
          Length = 546

 Score =  358 bits (918), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 190/374 (50%), Positives = 241/374 (64%), Gaps = 88/374 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+ +RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 224 MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA----------------------------- 254

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 255 ----------------MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 298

Query: 121 SVFFRSYKDAESKRIGDQ-EEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+FFRSY+D E KR+G   +E+F +P+R    GMR+  YDKLDDDG+  PG RVSG+D++
Sbjct: 299 SLFFRSYRD-EEKRMGTLIKEEFGRPSRDNTSGMRHGSYDKLDDDGLAPPGTRVSGEDII 357

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT   P N+DE  G   +F++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RSV
Sbjct: 358 IGKTT--PINQDENAG--GKFTRRDQSTSLRHSESGMVDQVLLTTNQDGLRFVKVRMRSV 413

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           RIPQIGDKF+SRHGQKGT G+ Y QE                                  
Sbjct: 414 RIPQIGDKFSSRHGQKGTVGMTYCQEDMPWTIEGITPDIIVNPHAIPSRMTIGQLIECIM 473

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGR+++A +FLGPT
Sbjct: 474 GKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPT 532

Query: 324 YYQRLKHMVDDKIH 337
           YYQRLKHMVDDKIH
Sbjct: 533 YYQRLKHMVDDKIH 546


>gi|52699796|gb|AAU86960.1| DNA-dependent RNA polymerase II second largest subunit [Cudonia
           circinans]
          Length = 718

 Score =  357 bits (917), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 187/373 (50%), Positives = 236/373 (63%), Gaps = 84/373 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 391 MGVFLTNYQQRMDTMANILYYPQKPLATTR------------------------------ 420

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY GYNQEDSVI+N S+++RG FR
Sbjct: 421 ---------------SMEFLKFRELPAGQNAIVAIACYAGYNQEDSVIMNQSSIDRGLFR 465

Query: 121 SVFFRSYKDAESKRIGDQE-EQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+R+Y D E KR+G    E FEKPNR     ++ A YDKLD+DGI++PG+RVSG+D++
Sbjct: 466 SLFYRAYTDQE-KRVGMATIESFEKPNRSDTIRLKTATYDKLDEDGIVSPGVRVSGEDII 524

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK  +KRD ST LR++E GIVDQV+LT N DG +F K+R+R+ 
Sbjct: 525 IGKTAPIAPDAEELGQRTKAHTKRDASTPLRSTENGIVDQVLLTTNADGLRFVKVRMRTT 584

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 585 KIPQIGDKFASRHGQKGTVGITYRQEDMPFTREGIVPDIIINPHAIPSRMTIAHLIECQL 644

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VS+ +G  GDATPF + V V  +S LL+++GYQ RG E+M+NGHTGRK+ AQVFLGPT
Sbjct: 645 SKVSTLRGLEGDATPFTE-VTVDSVSKLLRDHGYQSRGFEIMYNGHTGRKLRAQVFLGPT 703

Query: 324 YYQRLKHMVDDKI 336
           YYQRL+HMVDDKI
Sbjct: 704 YYQRLRHMVDDKI 716


>gi|56694304|gb|AAW22892.1| RNA polymerase II second largest subunit [Dicksonia antarctica]
          Length = 525

 Score =  357 bits (917), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 184/366 (50%), Positives = 233/366 (63%), Gaps = 84/366 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+ +RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 208 MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA----------------------------- 238

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN++VAI CY+GYNQEDSVI+N S+V+RG+FR
Sbjct: 239 ----------------MEHLHFRQLPAGINAVVAIACYSGYNQEDSVIMNQSSVDRGFFR 282

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+F+RSY+D E K+    +E+FE+PNR+   GMR+  YDKLDDDG+  PG RVSG+DV+I
Sbjct: 283 SIFYRSYRDEEKKQGTLVKEEFERPNRENTSGMRHGSYDKLDDDGLAPPGTRVSGEDVII 342

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT   P  +D+     +R+SKRD ST LR+SE+G+VDQV+LT N DG +F KIRVRS+R
Sbjct: 343 GKTT--PIAQDDTGSQAQRYSKRDQSTCLRHSESGMVDQVLLTTNADGLRFVKIRVRSIR 400

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 401 IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTQEGITPDIIVNPHAIPSRMTIGQLIECIMG 460

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGR++NA +FLGPTY
Sbjct: 461 KVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLNAMIFLGPTY 519

Query: 325 YQRLKH 330
           YQRLKH
Sbjct: 520 YQRLKH 525


>gi|113957845|gb|ABI49126.1| RNA polymerase II second largest subunit [Ramalina complanata]
          Length = 709

 Score =  357 bits (916), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 190/373 (50%), Positives = 237/373 (63%), Gaps = 84/373 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+ VRMDT+A++LYYP KPL TTR                              
Sbjct: 384 MGVFLTNYDVRMDTMANILYYPQKPLATTR------------------------------ 413

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 414 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 458

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+R+Y D E KR+G    EQFEKP R     +++  YDKLDDDGI++PG+RVSG+D++
Sbjct: 459 SLFYRAYTDQE-KRVGMSVVEQFEKPMRSDTLSLKHGTYDKLDDDGIVSPGVRVSGEDII 517

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK   KRD ST LR++E GIVDQV+L+ N DG +F K+R+R+ 
Sbjct: 518 IGKTAPIAPDAEELGQRTKLHVKRDTSTPLRSTENGIVDQVLLSTNSDGLRFVKVRMRTT 577

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 578 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQL 637

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 638 SKVSSLRGFEGDATPFTE-VTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 696

Query: 324 YYQRLKHMVDDKI 336
           YYQRL+HMVDDKI
Sbjct: 697 YYQRLRHMVDDKI 709


>gi|410610285|gb|AFV74911.1| RNA polymerase II second largest subunit, partial [Loranthus kaoi]
          Length = 480

 Score =  357 bits (916), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 189/369 (51%), Positives = 230/369 (62%), Gaps = 84/369 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+  RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 160 MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA----------------------------- 190

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 191 ----------------MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 234

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY+D E K     +E F +PNR    GMR+  YDKLDDDG+   G RVSG+DV+I
Sbjct: 235 SLFFRSYRDEEKKMGTLVKEDFGRPNRMDTMGMRHGSYDKLDDDGLAPSGTRVSGEDVII 294

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GK  T P  +DE +G   RF+KRD ST LR+SETGIVDQV+LT N DG +F K+RVRSVR
Sbjct: 295 GK--TSPIAQDESQGQASRFTKRDHSTSLRHSETGIVDQVLLTTNADGLRFVKVRVRSVR 352

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 353 IPQIGDKFSSRHGQKGTIGMTYTQEDMPWTVEGINPDIIVNPHAIPSRMTIGQLIECIMG 412

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGR++ A +FLGPTY
Sbjct: 413 KVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLPAMIFLGPTY 471

Query: 325 YQRLKHMVD 333
           YQRLKHMVD
Sbjct: 472 YQRLKHMVD 480


>gi|258562136|gb|ACV81790.1| RNA polymerase II second largest subunit [Termitomyces poonensis]
          Length = 664

 Score =  357 bits (916), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 184/371 (49%), Positives = 234/371 (63%), Gaps = 82/371 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+++TNF +RMDT+A++LYYP KPL TTR                              
Sbjct: 340 MGIFLTNFLIRMDTMANILYYPQKPLATTR------------------------------ 369

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 370 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 414

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP+R     M++  YDKL+DDG+IAPG  V+G+D++I
Sbjct: 415 SIYYRSYMDLEKKSGIQQLEEFEKPSRDNTLRMKHGTYDKLEDDGLIAPGTGVAGEDIII 474

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P   +EL   T+  ++RD ST L+++E+GIVDQV++T N +G KF K+RVRS R
Sbjct: 475 GKTAPIPPESEELGQRTRTHTRRDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRSTR 534

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 535 IPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGIVPDIIINPHAIPSRMTIGHLVECLLS 594

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D + V+ +ST L + GYQ RG EVM++GHTGRK+ AQV+LGPTY
Sbjct: 595 KVATLIGNEGDATPFTD-LTVESVSTFLXQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTY 653

Query: 325 YQRLKHMVDDK 335
           YQRLKHMVDDK
Sbjct: 654 YQRLKHMVDDK 664


>gi|52699784|gb|AAU86954.1| DNA-dependent RNA polymerase II second largest subunit [Athelia
           bombacina]
          Length = 698

 Score =  357 bits (915), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 185/372 (49%), Positives = 235/372 (63%), Gaps = 82/372 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG ++TNF +RMDT+A++LYYP KPL TTR                              
Sbjct: 371 MGXFLTNFLIRMDTMANILYYPQKPLATTR------------------------------ 400

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYLRFRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 401 ---------------SMEYLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 445

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP+R +   M++  YDKL+DDG+IAPG RV+G+D++I
Sbjct: 446 SIYYRSYMDLEKKSGIQQLEEFEKPSRDSTLRMKHGTYDKLEDDGMIAPGTRVNGEDIII 505

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T   ++RD ST L+++E GIVDQV++T N +G KF K+RVRS R
Sbjct: 506 GKTAPIPPDSEELGQRTNLHTRRDVSTPLKSTEKGIVDQVLITTNSEGQKFVKVRVRSSR 565

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           +PQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 566 VPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLS 625

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D + V+ +S  L++ GYQ RG EVM++GHTGRK+ AQV+LGPTY
Sbjct: 626 KVATLIGNEGDATPFTD-LTVESVSAYLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTY 684

Query: 325 YQRLKHMVDDKI 336
           YQRLKHMVDDKI
Sbjct: 685 YQRLKHMVDDKI 696


>gi|56694318|gb|AAW22899.1| RNA polymerase II second largest subunit [Macrozamia moorei]
          Length = 523

 Score =  357 bits (915), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 188/374 (50%), Positives = 238/374 (63%), Gaps = 86/374 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+ +RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 199 MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA----------------------------- 229

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 230 ----------------MEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFR 273

Query: 121 SVFFRSYKDAESKRIGDQ-EEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+RSY+D E KR+G   +E+F +PNR+   GMR+  YDKLDDDG+  PG RVSG+ V+
Sbjct: 274 SLFYRSYRD-EEKRMGTLVKEEFGRPNRENTTGMRHGSYDKLDDDGLAPPGTRVSGEXVI 332

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT   P  +DE  G   R++KRD ST LR+SE+G+VDQV+LT N DG +F K+R+ SV
Sbjct: 333 IGKTT--PVTQDESGGQAARYTKRDQSTSLRHSESGMVDQVLLTTNADGLRFVKVRMXSV 390

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           RIPQIGDKF+SRHGQKGT G+ Y QE                                  
Sbjct: 391 RIPQIGDKFSSRHGQKGTVGMTYCQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIM 450

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             V+++ G+ GDATPF D V V  IS  L + GYQ+ G E M+NGHTGR+++A +FLGPT
Sbjct: 451 GKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMXGFETMYNGHTGRRLSAMIFLGPT 509

Query: 324 YYQRLKHMVDDKIH 337
           YYQRLKHMVDDKIH
Sbjct: 510 YYQRLKHMVDDKIH 523


>gi|110669594|gb|ABG81892.1| RNA polymerase II second largest subunit [Mycoblastus sanguinarius]
          Length = 709

 Score =  356 bits (914), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 191/373 (51%), Positives = 236/373 (63%), Gaps = 84/373 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 384 MGVFLTNYDQRMDTMANILYYPQKPLATTR------------------------------ 413

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 414 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 458

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+RSY D E KRIG    EQFEKP R     +++  Y+KLDDDGI+APG+RVSG+D++
Sbjct: 459 SLFYRSYTDQE-KRIGMSVVEQFEKPMRSDTLKLKHGTYEKLDDDGIVAPGVRVSGEDII 517

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK   KRD ST LR++E GIVDQV+L+ N DG +F K+R+R+ 
Sbjct: 518 IGKTAPIAPDAEELGQRTKLHVKRDASTPLRSTENGIVDQVLLSTNSDGLRFVKVRMRTT 577

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 578 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTGEGVVPDLIINPHAIPSRMTIAHLIECQL 637

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 638 SKVSSLRGYEGDATPFTE-VTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 696

Query: 324 YYQRLKHMVDDKI 336
           YYQRL+HMVDDKI
Sbjct: 697 YYQRLRHMVDDKI 709


>gi|45330861|gb|AAS57791.1| RNA polymerase II second largest subunit [Cortinarius iodes]
          Length = 878

 Score =  356 bits (914), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 184/372 (49%), Positives = 236/372 (63%), Gaps = 82/372 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF +RMDT+A++LYYP KPL TTR                              
Sbjct: 553 MGIYLTNFLIRMDTMANILYYPQKPLATTR------------------------------ 582

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 583 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 627

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP R+    +++  YDKL+DDG+IAPG  V+G+D++I
Sbjct: 628 SIYYRSYMDLEKKSGIQQLEEFEKPTRENTLRLKHGTYDKLEDDGLIAPGTGVAGEDIII 687

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E+GIVDQV++T N +G KF K+RVRS R
Sbjct: 688 GKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRSSR 747

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 748 IPQIGDKFASRHGQKGTVGITYRQEDMPFTAEGIVPDVIINPHAIPSRMTIGHLVECLLS 807

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D + V+ +S  L++ GYQ RG EVM++GHTGRK+ AQV+LGPTY
Sbjct: 808 KVATLIGNEGDATPFTD-LTVESVSIFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTY 866

Query: 325 YQRLKHMVDDKI 336
           YQRLKHMVDDKI
Sbjct: 867 YQRLKHMVDDKI 878


>gi|55273993|gb|AAV48867.1| RNA polymerase II second largest subunit [Armillaria mellea]
          Length = 884

 Score =  356 bits (914), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 186/373 (49%), Positives = 233/373 (62%), Gaps = 82/373 (21%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF +RMDT+A++LYYP KPL TTR                              
Sbjct: 558 MGIYLTNFLIRMDTMANILYYPQKPLATTR------------------------------ 587

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 588 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 632

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E        E FEKP R++   M++  YDKL+DDG+IAPG  V G+D++I
Sbjct: 633 SIYYRSYMDVEKNNGIHSMEVFEKPMRESTLRMKHGTYDKLEDDGLIAPGTGVVGEDIII 692

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P   +EL   T+  ++RD ST L+N+E GIVDQV++T N +G KF K+RVRS R
Sbjct: 693 GKTAPIPPESEELGQRTRMHTRRDVSTPLKNTERGIVDQVLVTTNYEGQKFVKVRVRSTR 752

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 753 IPQIGDKFASRHGQKGTIGITYRQEDMPFTCEGIVPDIIINPHAIPSRMTIGHLVECLLS 812

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D + V+ +ST L++ GYQ RG EVM++GHTGRK+ AQV+LGPTY
Sbjct: 813 KVATLIGNEGDATPFTD-LTVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTY 871

Query: 325 YQRLKHMVDDKIH 337
           YQRLKHMVDDKIH
Sbjct: 872 YQRLKHMVDDKIH 884


>gi|103001984|gb|ABF71530.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
           gobiense]
          Length = 719

 Score =  356 bits (914), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 192/373 (51%), Positives = 236/373 (63%), Gaps = 84/373 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 392 MGVFLTNYDQRMDTMANILYYPQKPLATTR------------------------------ 421

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 422 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 466

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+RSY D E KRIG    EQFEKP R     +++  YDKLDDDGI+APG+RVSG+D++
Sbjct: 467 SLFYRSYTDQE-KRIGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDII 525

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK   KRD ST LR++E GIVDQV+LT N +G +F K+R+R+ 
Sbjct: 526 IGKTAPIAPDAEELGQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTT 585

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 586 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTKEGIVPDLIINPHAIPSRMTIAHLIECQL 645

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 646 SKVSSLRGFEGDATPFTE-VTVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 704

Query: 324 YYQRLKHMVDDKI 336
           YYQRL+HMVDDKI
Sbjct: 705 YYQRLRHMVDDKI 717


>gi|113957128|gb|ABI49099.1| RNA polymerase II second largest subunit [Crocynia pyxinoides]
          Length = 331

 Score =  356 bits (914), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 189/373 (50%), Positives = 236/373 (63%), Gaps = 84/373 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+ VRMDT+A++LYYP KPL TTR                              
Sbjct: 6   MGVFLTNYDVRMDTMANILYYPQKPLATTR------------------------------ 35

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 36  ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 80

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+R+Y D E KR+G    EQFEKP R     +++  YDKLDDDGI+APG+RVSG+D++
Sbjct: 81  SLFYRAYTDQE-KRVGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDII 139

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK   KRD ST LR++E GIVDQV+L+ N DG +F K+R+R+ 
Sbjct: 140 IGKTAPIAPDAEELGQRTKLHVKRDTSTPLRSTENGIVDQVLLSTNSDGLRFVKVRMRTT 199

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           ++PQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 200 KVPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQL 259

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + V V  +S LL+E+GY  RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 260 SKVSSLRGYEGDATPFTE-VTVDSVSKLLREHGYHSRGFEVMYNGHTGRKLVAQVFLGPT 318

Query: 324 YYQRLKHMVDDKI 336
           YYQRL+HMVDDKI
Sbjct: 319 YYQRLRHMVDDKI 331


>gi|113957206|gb|ABI49109.1| RNA polymerase II second largest subunit [Pyxine subcinerea]
          Length = 709

 Score =  356 bits (913), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 187/372 (50%), Positives = 234/372 (62%), Gaps = 82/372 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TNF  RM+T++H+LYYP KPL TTR                              
Sbjct: 384 MGVFLTNFDQRMETMSHILYYPQKPLATTR------------------------------ 413

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 414 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 458

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+F+RSY D E K      EQFEKP R     +++  Y+KLDDDGII PG RVSG+D++I
Sbjct: 459 SLFYRSYTDQEKKIGMYTMEQFEKPLRSDTLKLKHGTYEKLDDDGIIIPGARVSGEDIII 518

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +  + +EL   TK  +KRD ST LR++E+G+VDQV+LT+N +G +F K+R+R+ +
Sbjct: 519 GKTAPIAPDAEELGQRTKLHNKRDASTPLRSTESGLVDQVLLTVNSEGLRFVKVRMRTTK 578

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           +PQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 579 VPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLS 638

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            VSS +G  GDATPF D V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPTY
Sbjct: 639 KVSSLRGYEGDATPFTD-VTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTY 697

Query: 325 YQRLKHMVDDKI 336
           YQRL+HMVDDKI
Sbjct: 698 YQRLRHMVDDKI 709


>gi|52699808|gb|AAU86966.1| DNA-dependent RNA polymerase II second largest subunit
           [Diploschistes scruposus]
          Length = 713

 Score =  356 bits (913), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 192/375 (51%), Positives = 237/375 (63%), Gaps = 84/375 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TNF  RMDT+A++LYYP KPL TTR                              
Sbjct: 386 MGVFLTNFDERMDTMANILYYPQKPLATTR------------------------------ 415

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 416 ---------------SMEFLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 460

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+R+Y + E KR+G    EQFEKP R     +++  Y+KLDDDG+IAPG+RVSG+DV+
Sbjct: 461 SLFYRAYVEQE-KRVGMSLVEQFEKPLRSETLRLKHGTYEKLDDDGLIAPGVRVSGEDVI 519

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + DEL   TK  SKRD ST LR++E GIVD+V+LT N +G KF K+R+R+ 
Sbjct: 520 IGKTAPIAPDTDELGQRTKLHSKRDASTPLRSTENGIVDKVLLTTNQEGLKFVKVRMRTT 579

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 580 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDLIINPHAIPSRMTIAHLIECQL 639

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF D V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVF GPT
Sbjct: 640 SKVSSLRGFEGDATPFTD-VTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLRAQVFFGPT 698

Query: 324 YYQRLKHMVDDKIHS 338
           YYQRL+HMVD KI +
Sbjct: 699 YYQRLRHMVDXKIXA 713


>gi|113957144|gb|ABI49101.1| RNA polymerase II second largest subunit [Pseudocyphellaria
           anomala]
          Length = 715

 Score =  356 bits (913), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 192/373 (51%), Positives = 236/373 (63%), Gaps = 84/373 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 390 MGVFLTNYDQRMDTMANILYYPQKPLATTR------------------------------ 419

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 420 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 464

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+RSY D E KRIG    EQFEKP R     +++  YDKLDDDGI+APG+RVSG+D++
Sbjct: 465 SLFYRSYTDQE-KRIGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDII 523

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK   KRD ST LR++E GIVDQV+LT N +G +F K+R+R+ 
Sbjct: 524 IGKTAPIAPDAEELGQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTT 583

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 584 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQL 643

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 644 SKVSSLRGFEGDATPFTE-VTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 702

Query: 324 YYQRLKHMVDDKI 336
           YYQRL+HMVDDKI
Sbjct: 703 YYQRLRHMVDDKI 715


>gi|110669610|gb|ABG81900.1| RNA polymerase II second largest subunit [Hypocenomyce scalaris]
          Length = 708

 Score =  356 bits (913), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 191/373 (51%), Positives = 237/373 (63%), Gaps = 84/373 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 383 MGVFLTNYEQRMDTMANILYYPQKPLATTR------------------------------ 412

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 413 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 457

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+R+Y D E KRIG    EQFEKP R     +++  YDKLDDDGI+APG+RVSG+D++
Sbjct: 458 SLFYRAYTDQE-KRIGMSVVEQFEKPMRSDTLRLKHGTYDKLDDDGIVAPGVRVSGEDII 516

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK   KRD ST LR++E+GIVDQV+LT N +G +F K+R+R+ 
Sbjct: 517 IGKTAPIAPDAEELGQRTKLHVKRDVSTPLRSTESGIVDQVLLTTNAEGLRFVKVRMRTT 576

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 577 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQL 636

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 637 SKVSSLRGFEGDATPFTE-VTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 695

Query: 324 YYQRLKHMVDDKI 336
           YYQRL+HMVDDKI
Sbjct: 696 YYQRLRHMVDDKI 708


>gi|52699806|gb|AAU86965.1| DNA-dependent RNA polymerase II second largest subunit [Coenogonium
           luteum]
          Length = 714

 Score =  355 bits (912), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 185/372 (49%), Positives = 234/372 (62%), Gaps = 82/372 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TNF  RMDT+A++LYYP KPL TTR                              
Sbjct: 387 MGVFLTNFDERMDTMANILYYPQKPLATTR------------------------------ 416

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 417 ---------------SMEYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 461

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+F+RSY + E     +  EQFEKP R     +++  YDKLDDDGIIAPG+RVSG+D++I
Sbjct: 462 SLFYRSYVEQEKHLGMEVVEQFEKPLRSETLRLKHGTYDKLDDDGIIAPGIRVSGEDIII 521

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +  N++EL   TK  +KRD ST LR++E+G+VD+V++T N +G KF K+R R+ +
Sbjct: 522 GKTAPMRSNDEELGQRTKLHTKRDASTALRSTESGLVDKVLITTNAEGLKFVKVRTRTTK 581

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           +PQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 582 VPQIGDKFASRHGQKGTIGITYRQEDMPFSAQGIVPDLIINPHAIPSRMTIAHLIECQLS 641

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            VSS +G  GDATPF + V V  +S LL+E+GYQ RG E+M+NGHTG+K+ AQVF GPTY
Sbjct: 642 KVSSLRGFEGDATPFTE-VTVDSVSRLLREHGYQSRGFEIMYNGHTGKKLVAQVFFGPTY 700

Query: 325 YQRLKHMVDDKI 336
           YQRL+HMVDDKI
Sbjct: 701 YQRLRHMVDDKI 712


>gi|52699878|gb|AAU87000.1| DNA-dependent RNA polymerase II second largest subunit
           [Sphaerophorus globosus]
          Length = 735

 Score =  355 bits (912), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 189/373 (50%), Positives = 237/373 (63%), Gaps = 84/373 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV+ TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 410 MGVFXTNYDQRMDTMANILYYPQKPLATTR------------------------------ 439

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 440 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 484

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+RSY D E KR+G    EQFEKP R     +++  YDKLDDDGI+APG+RVSG+D++
Sbjct: 485 SLFYRSYTDQE-KRVGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDII 543

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK+ +KRD ST LR++E GIVDQV+L+ N DG +F K+R+R+ 
Sbjct: 544 IGKTAPISPDAEELGQRTKQHTKRDTSTPLRSTENGIVDQVLLSTNSDGLRFVKVRMRTT 603

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 604 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQL 663

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + V V  +S LL+E+GYQ RG E+M+NGHTG+K+ AQVFLGPT
Sbjct: 664 SKVSSLRGFEGDATPFTE-VTVDSVSRLLREHGYQSRGFEIMYNGHTGQKLRAQVFLGPT 722

Query: 324 YYQRLKHMVDDKI 336
           YYQRL+HMVDDKI
Sbjct: 723 YYQRLRHMVDDKI 735


>gi|119644218|gb|ABL85613.1| RNA polymerase II second largest subunit [Rinodina tephraspis]
          Length = 718

 Score =  355 bits (912), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 189/373 (50%), Positives = 237/373 (63%), Gaps = 84/373 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+  RM+T++H+LYYP KPL TTR                              
Sbjct: 393 MGVFLTNYEQRMETMSHILYYPQKPLATTR------------------------------ 422

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 423 ---------------SMEYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 467

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+RSY D E KRIG +  EQFEKP R     +++  YDKLD+DGII PG RVSG+D++
Sbjct: 468 SLFYRSYTDQE-KRIGANVLEQFEKPMRADTLKLKHGTYDKLDEDGIIIPGARVSGEDII 526

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +E+   TK  +KRD ST LR++E+G+VDQV+LT N +G +F K+R+R+ 
Sbjct: 527 IGKTAPIAPDAEEMGQRTKLHTKRDASTPLRSTESGLVDQVLLTTNAEGLRFVKVRMRTT 586

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 587 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQL 646

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 647 SKVSSLRGFEGDATPFTE-VTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 705

Query: 324 YYQRLKHMVDDKI 336
           YYQRL+HMVDDKI
Sbjct: 706 YYQRLRHMVDDKI 718


>gi|120561251|gb|ABM27010.1| RNA polymerase II second largest subunit, partial [Basidiobolus
           ranarum]
          Length = 883

 Score =  355 bits (911), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 183/368 (49%), Positives = 231/368 (62%), Gaps = 82/368 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+ +RMDT+A++LYYP KPL TTR+                             
Sbjct: 562 MGIYVTNYQLRMDTMANILYYPQKPLCTTRA----------------------------- 592

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           MEYLRFRELPAG N+IVAILCY+GYNQEDS+I+N ++++RG FR
Sbjct: 593 ----------------MEYLRFRELPAGQNAIVAILCYSGYNQEDSLIMNQTSIDRGLFR 636

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+F+RSY D E K      E+FEKP R++   +++  Y+KL+ DG+IAPG RVSGDD++I
Sbjct: 637 SIFYRSYMDQEKKVGMMVMEEFEKPTRESTLRLKHGTYEKLEGDGLIAPGTRVSGDDIII 696

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   TK  SKRD ST LR++E GIVDQVMLT N +G KF K+RVRS R
Sbjct: 697 GKTAPIPPDSEELGQRTKTHSKRDASTPLRSTENGIVDQVMLTTNQEGLKFVKVRVRSTR 756

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           +PQ+GDKFASRHGQKGT G+ YRQE                                   
Sbjct: 757 VPQMGDKFASRHGQKGTIGVTYRQEDMPFNNEGIVPDLIINPHAIPSRMTIGHMVECLLS 816

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            VS+  G  GDATPF + V V+ IS  LQE+GYQ RG EV++NGHTGRK+ AQ++ GPTY
Sbjct: 817 KVSTLSGNEGDATPFTE-VTVEAISHALQEHGYQKRGFEVLYNGHTGRKLTAQIYFGPTY 875

Query: 325 YQRLKHMV 332
           YQRLKHMV
Sbjct: 876 YQRLKHMV 883


>gi|52699768|gb|AAU86946.1| DNA-dependent RNA polymerase II second largest subunit [Acarospora
           bullata]
          Length = 727

 Score =  355 bits (911), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 191/373 (51%), Positives = 235/373 (63%), Gaps = 84/373 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGVY+TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 400 MGVYLTNYDQRMDTMANILYYPQKPLATTR------------------------------ 429

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 430 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 474

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+RSY D E KRIG    EQFEKP R     +++  YDKLDDDGI+APG+RVSG+D++
Sbjct: 475 SLFYRSYTDQE-KRIGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDII 533

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK   KRD ST LR++E GIVDQV+LT N +G +F K+R+R+ 
Sbjct: 534 IGKTAPIAPDAEELGQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTT 593

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 594 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTKEGIVPDLIINPHAIPSRMTIAHLIECQL 653

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + + V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 654 SKVSSLRGFEGDATPFTE-ITVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 712

Query: 324 YYQRLKHMVDDKI 336
           YYQRL+HMVD KI
Sbjct: 713 YYQRLRHMVDXKI 725


>gi|52699820|gb|AAU86972.1| DNA-dependent RNA polymerase II second largest subunit [Gyromitra
           esculenta]
          Length = 699

 Score =  355 bits (911), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 191/372 (51%), Positives = 236/372 (63%), Gaps = 84/372 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV+ TNF  RMDT+A++LYYP KPL TTR                              
Sbjct: 375 MGVFXTNFSERMDTMANILYYPQKPLATTR------------------------------ 404

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 405 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 449

Query: 121 SVFFRSYKDAESKRIGDQ-EEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+R+Y D E KRIG Q  E+FEKP R     ++   Y+KLD+DG++APG+RVSG+D++
Sbjct: 450 SLFYRAYMDQE-KRIGMQVVEEFEKPTRSNTLKLKQGTYEKLDEDGLVAPGVRVSGEDII 508

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + DE+    K  +KRD ST LR++E GIVDQVMLT N +G KF K+R+R+ 
Sbjct: 509 IGKTAPIAPDVDEMGQRQKFHTKRDVSTPLRSTENGIVDQVMLTTNAEGLKFVKVRMRTT 568

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 569 KIPQIGDKFASRHGQKGTVGITYRQEDMPFTCEGIVPDLIINPHAIPSRMTIAHLIECQL 628

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF D V V+ +STLL++ GYQ RG EVM+NG+TGRK+ AQVFLGPT
Sbjct: 629 SKVSSLRGFEGDATPFTD-VTVESVSTLLRQNGYQSRGFEVMYNGYTGRKLVAQVFLGPT 687

Query: 324 YYQRLKHMVDDK 335
           YYQRL+HMVDDK
Sbjct: 688 YYQRLRHMVDDK 699


>gi|52699853|gb|AAU86988.1| DNA-dependent RNA polymerase II second largest subunit [Placynthium
           nigrum]
          Length = 716

 Score =  355 bits (911), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 191/373 (51%), Positives = 236/373 (63%), Gaps = 84/373 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+ +RMDT+A++LYYP KPL TTR                              
Sbjct: 389 MGVFLTNYDLRMDTMANILYYPQKPLATTR------------------------------ 418

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 419 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 463

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+RSY D E KRIG    EQFEKP R     +++  YDKLDDDGI+APG+RVSG+D++
Sbjct: 464 SLFYRSYTDQE-KRIGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDII 522

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK   KRD ST LR++E GIVDQV+LT N +G +F K+R+R+ 
Sbjct: 523 IGKTAPIAPDAEELGQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTT 582

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 583 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQL 642

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 643 SKVSSLRGFEGDATPFTE-VTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 701

Query: 324 YYQRLKHMVDDKI 336
           YYQRL+HMVD KI
Sbjct: 702 YYQRLRHMVDXKI 714


>gi|56694364|gb|AAW22922.1| RNA polymerase II second largest subunit [Amborella trichopoda]
          Length = 516

 Score =  354 bits (909), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 182/367 (49%), Positives = 233/367 (63%), Gaps = 84/367 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+ +RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 198 MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA----------------------------- 228

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 229 ----------------MEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFR 272

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY+D E K     +E F +PNR+   GMR+  YDKLDDDG+  PG RVSG+DV+I
Sbjct: 273 SLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 332

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT   P  ++E++G   R+++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVR
Sbjct: 333 GKTT--PITQEEMQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVR 390

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 391 IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMG 450

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGR+++A +FLGPTY
Sbjct: 451 KVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTY 509

Query: 325 YQRLKHM 331
           YQRLKHM
Sbjct: 510 YQRLKHM 516


>gi|103001922|gb|ABF71527.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
           flavum]
          Length = 701

 Score =  354 bits (909), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 191/371 (51%), Positives = 234/371 (63%), Gaps = 84/371 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 378 MGVFLTNYDQRMDTMANILYYPQKPLATTR------------------------------ 407

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 408 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 452

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+RSY D E KRIG    EQFEKP R     +++  YDKLDDDGI+APG+RVSG+D++
Sbjct: 453 SLFYRSYTDQE-KRIGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDII 511

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK   KRD ST LR++E GIVDQV+LT N +G KF K+R+R+ 
Sbjct: 512 IGKTAPISPDAEELGQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLKFVKVRMRTT 571

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 572 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTKEGVVPDLIINPHAIPSRMTIAHLIECQL 631

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 632 SKVSSLRGFEGDATPFTE-VTVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 690

Query: 324 YYQRLKHMVDD 334
           YYQRL+HMVDD
Sbjct: 691 YYQRLRHMVDD 701


>gi|52699812|gb|AAU86968.1| DNA-dependent RNA polymerase II second largest subunit [Glypholecia
           scabra]
          Length = 722

 Score =  354 bits (909), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 191/373 (51%), Positives = 235/373 (63%), Gaps = 84/373 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 395 MGVFLTNYDQRMDTMANILYYPQKPLATTR------------------------------ 424

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 425 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 469

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+RSY D E KRIG    EQFEKP R     +++  YDKLDDDGI+APG+RVSG+D++
Sbjct: 470 SLFYRSYTDQE-KRIGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDII 528

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK   KRD ST LR++E GIVDQV+LT N +G +F K+R+R+ 
Sbjct: 529 IGKTAPIAPDAEELGQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTT 588

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 589 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTKEGIVPDLIINPHAIPSRMTIAHLIECQL 648

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 649 SKVSSLRGFEGDATPFTE-VTVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 707

Query: 324 YYQRLKHMVDDKI 336
           YYQRL+HMVD KI
Sbjct: 708 YYQRLRHMVDXKI 720


>gi|52699860|gb|AAU86991.1| DNA-dependent RNA polymerase II second largest subunit [Porpidia
           albocaerulescens]
          Length = 715

 Score =  354 bits (908), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 190/373 (50%), Positives = 237/373 (63%), Gaps = 84/373 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+ VRMDT+A++LYYP KPL TTR                              
Sbjct: 388 MGVFLTNYDVRMDTMANILYYPQKPLATTR------------------------------ 417

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 418 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 462

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+RSY D E KRIG +  E+FEKP R     +++  YDKLDDDGI+APG+RVSG+D++
Sbjct: 463 SLFYRSYTDQE-KRIGMNVVEEFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDII 521

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK   KRD ST LR++E GIVDQV+LT N +G +F K+R+R+ 
Sbjct: 522 IGKTAPIAPDAEELGLRTKLHMKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTT 581

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 582 KIPQIGDKFASRHGQKGTIGITYRQEDMPFSSEGVVPDLIINPHAIPSRMTIAHLIECQL 641

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTG+K+ AQVFLGPT
Sbjct: 642 SKVSSLRGFEGDATPFTE-VTVDSVSRLLREHGYQSRGFEVMYNGHTGKKLVAQVFLGPT 700

Query: 324 YYQRLKHMVDDKI 336
           YYQRL+HMVD KI
Sbjct: 701 YYQRLRHMVDXKI 713


>gi|103001947|gb|ABF71528.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
           cf. chlorophanum Riefner 87-426]
          Length = 673

 Score =  354 bits (908), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 191/372 (51%), Positives = 234/372 (62%), Gaps = 84/372 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++ N+  RMDT+A++LYYP KPL TTR                              
Sbjct: 346 MGVFLXNYXQRMDTMANILYYPQKPLATTR------------------------------ 375

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 376 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 420

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+RSY D E KRIG    EQFEKP R     +++  YDKLDDDGI+APG+RVSG+D++
Sbjct: 421 SLFYRSYTDQE-KRIGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDII 479

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK   KRD ST LR++E GIVDQV+LT N +G KF K+R+R+ 
Sbjct: 480 IGKTAPISPDAEELGQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLKFVKVRMRTT 539

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 540 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTKEGVVPDLIINPHAIPSRMTIAHLIECQL 599

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 600 SKVSSLRGFEGDATPFTE-VTVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 658

Query: 324 YYQRLKHMVDDK 335
           YYQRL+HMVDDK
Sbjct: 659 YYQRLRHMVDDK 670


>gi|110669602|gb|ABG81896.1| RNA polymerase II second largest subunit [Lecanora hybocarpa]
          Length = 703

 Score =  354 bits (908), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 188/373 (50%), Positives = 236/373 (63%), Gaps = 84/373 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 378 MGVFLTNYEQRMDTMANILYYPQKPLATTR------------------------------ 407

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 408 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 452

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+R+Y D E KRIG    EQFEKP R     +++  YDKLDDDG++APG+RVSG+D++
Sbjct: 453 SLFYRAYTDQE-KRIGLAVLEQFEKPMRSDTLKLKHGTYDKLDDDGVVAPGVRVSGEDII 511

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK  +KRD ST LR++E GIVDQV+++ N DG +F K+R+R+ 
Sbjct: 512 IGKTAPMAPDAEELGQRTKAHTKRDVSTPLRSTENGIVDQVLMSTNADGLRFVKVRMRTT 571

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 572 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQL 631

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + V V  +S LL++ GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 632 SKVSSLRGYEGDATPFTE-VTVDSVSRLLRQNGYQSRGFEVMYNGHTGRKLVAQVFLGPT 690

Query: 324 YYQRLKHMVDDKI 336
           YYQRL+HMVDDKI
Sbjct: 691 YYQRLRHMVDDKI 703


>gi|52699857|gb|AAU86990.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
           chlorophanum]
          Length = 714

 Score =  354 bits (908), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 191/373 (51%), Positives = 234/373 (62%), Gaps = 84/373 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 387 MGVFLTNYDQRMDTMANILYYPQKPLATTR------------------------------ 416

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 417 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 461

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+RSY D E KRIG    EQFEKP R     +++  YDKLDDDGI+APG+RVSG+D++
Sbjct: 462 SLFYRSYTDQE-KRIGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDII 520

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK   KRD ST LR++E GI DQV+LT   +G KF K+R+R+ 
Sbjct: 521 IGKTAPIAPDAEELGQRTKLHVKRDVSTPLRSTENGIXDQVLLTTXAEGLKFVKVRMRTT 580

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 581 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTMEGVVPDLIINPHAIPSRMTIAHLIECQL 640

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 641 SKVSSLRGFEGDATPFTE-VTVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 699

Query: 324 YYQRLKHMVDDKI 336
           YYQRL+HMVDDKI
Sbjct: 700 YYQRLRHMVDDKI 712


>gi|300394768|gb|ADK11922.1| DNA-directed RNA polymerase II subunit two, partial [Leucogyrophana
           mollusca]
          Length = 875

 Score =  354 bits (908), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 184/368 (50%), Positives = 232/368 (63%), Gaps = 82/368 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF VRMDT+A++LYYP KPL TTR                              
Sbjct: 554 MGIYLTNFLVRMDTMANILYYPQKPLATTR------------------------------ 583

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 584 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 628

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP R T   M++  YDK++DDG+IAPG  VSG+D++I
Sbjct: 629 SIYYRSYMDLEKKSGVQQLEEFEKPTRDTTLRMKHGTYDKIEDDGLIAPGTGVSGEDIII 688

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E GIVDQV++T N +G KF K+RVRS R
Sbjct: 689 GKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTR 748

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 749 IPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDXIINPHAIPXRMTIGHLVECLLS 808

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D + V+ +ST L++ GYQ RG EVM++GHTGRK+ AQV+LGPTY
Sbjct: 809 KVATLIGNEGDATPFTD-LTVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTY 867

Query: 325 YQRLKHMV 332
           YQRLKHMV
Sbjct: 868 YQRLKHMV 875


>gi|52699833|gb|AAU86978.1| DNA-dependent RNA polymerase II second largest subunit [Lobaria
           quercizans]
          Length = 717

 Score =  354 bits (908), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 191/375 (50%), Positives = 235/375 (62%), Gaps = 84/375 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG    N+  RMDT+A++LYYP KPL TTR                              
Sbjct: 390 MGXXXXNYDQRMDTMANILYYPQKPLATTR------------------------------ 419

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 420 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 464

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+RSY D E KRIG    EQFEKP R     +++  YDKLDDDGI+APG+RVSG+D++
Sbjct: 465 SLFYRSYTDQE-KRIGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDII 523

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK   KRD ST LR++E GIVDQV+LT N +G +F K+R+R+ 
Sbjct: 524 IGKTAPIAPDAEELGQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTT 583

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 584 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQL 643

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK++AQVFLGPT
Sbjct: 644 SKVSSLRGFEGDATPFTE-VTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLHAQVFLGPT 702

Query: 324 YYQRLKHMVDDKIHS 338
           YYQRL+HMVDDKIH+
Sbjct: 703 YYQRLRHMVDDKIHA 717


>gi|52699831|gb|AAU86977.1| DNA-dependent RNA polymerase II second largest subunit [Leptogium
           cyanescens]
          Length = 713

 Score =  353 bits (907), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 188/373 (50%), Positives = 236/373 (63%), Gaps = 84/373 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 386 MGVFLTNYEQRMDTMANILYYPQKPLATTR------------------------------ 415

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 416 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 460

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+R+Y D E KRIG    EQFEKP R     +++  YDKLD+DGI+APG+RVSG+D++
Sbjct: 461 SLFYRAYTDQE-KRIGMSVVEQFEKPMRTDTLKLKHGTYDKLDEDGIVAPGVRVSGEDII 519

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  L  + +EL   TK   KRD ST LR++E GIVDQV+LT N +G +F K+R+R+ 
Sbjct: 520 IGKTAPLSADNEELGQRTKMHVKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTT 579

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           ++PQIGDKFASRHGQKGT G+ YRQE                                  
Sbjct: 580 KVPQIGDKFASRHGQKGTIGVTYRQEDMPFTSEGQVPDLIINPHAIPSRMTIAHLIECQL 639

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQ+FLGPT
Sbjct: 640 SKVSSLRGYEGDATPFTE-VTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQIFLGPT 698

Query: 324 YYQRLKHMVDDKI 336
           YYQRL+HMVDDKI
Sbjct: 699 YYQRLRHMVDDKI 711


>gi|300394754|gb|ADK11915.1| DNA-directed RNA polymerase II subunit two, partial [Suillus
           bresadolae]
          Length = 694

 Score =  353 bits (907), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 184/368 (50%), Positives = 232/368 (63%), Gaps = 82/368 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF VRMDT+A++LYYP KPL TTR                              
Sbjct: 373 MGIYLTNFLVRMDTMANILYYPQKPLATTR------------------------------ 402

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 403 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 447

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP R T   M++  YDK++DDG+IAPG  VSG+D++I
Sbjct: 448 SIYYRSYMDLEKKSGVQQLEEFEKPTRDTTLRMKHGTYDKIEDDGLIAPGTGVSGEDIII 507

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E GIVDQV++T N +G KF K+RVRS R
Sbjct: 508 GKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTR 567

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 568 IPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDIVINPHAIPSRMTIGHLVECLLS 627

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D + V+ +ST L++ GYQ RG EVM++GHTGRK+ AQV+LGPTY
Sbjct: 628 KVATLIGNEGDATPFTD-LTVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTY 686

Query: 325 YQRLKHMV 332
           YQRLKHMV
Sbjct: 687 YQRLKHMV 694


>gi|52699870|gb|AAU86996.1| DNA-dependent RNA polymerase II second largest subunit [Sarcogyne
           regularis var. regularis]
          Length = 702

 Score =  353 bits (907), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 191/373 (51%), Positives = 235/373 (63%), Gaps = 84/373 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 375 MGVFLTNYDQRMDTMANILYYPQKPLATTR------------------------------ 404

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 405 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 449

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+RSY D E KRIG    EQFEKP R     +++  YDKLDDDGI+APG+RVSG+D++
Sbjct: 450 SLFYRSYTDQE-KRIGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDII 508

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK   KRD ST LR++E GIVDQV+LT N +G +F K+R+R+ 
Sbjct: 509 IGKTAPIAPDAEELGQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTT 568

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 569 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTKEGVVPDLIINPHAIPSRMTIAHLIECQL 628

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 629 SKVSSLRGFEGDATPFTE-VTVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 687

Query: 324 YYQRLKHMVDDKI 336
           YYQRL+HMVD KI
Sbjct: 688 YYQRLRHMVDXKI 700


>gi|110669596|gb|ABG81893.1| RNA polymerase II second largest subunit [Pertusaria dactylina]
          Length = 714

 Score =  353 bits (906), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 189/373 (50%), Positives = 234/373 (62%), Gaps = 84/373 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TNF  RMDT++++LYYP KPL TTR                              
Sbjct: 389 MGVFLTNFDERMDTMSNILYYPQKPLATTR------------------------------ 418

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 419 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 463

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+R+Y D E KRIG    EQFEKP R     +++  YDKLDDDGI+APG+RVSG+D++
Sbjct: 464 SLFYRAYTDQE-KRIGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDII 522

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK   KRD ST LR +E GIVD+V+LT N +G +F K+R+R+ 
Sbjct: 523 IGKTAPIAPDAEELGQRTKLHIKRDASTPLRTTENGIVDKVLLTTNAEGLRFVKVRMRTT 582

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 583 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQL 642

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+  QVFLGPT
Sbjct: 643 SKVSSLRGFEGDATPFTE-VTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVVQVFLGPT 701

Query: 324 YYQRLKHMVDDKI 336
           YYQRL+HMVDDKI
Sbjct: 702 YYQRLRHMVDDKI 714


>gi|94410904|gb|ABF18573.1| RNA polymerase II second largest subunit, partial [Fistulina
           antarctica]
          Length = 690

 Score =  353 bits (906), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 183/368 (49%), Positives = 232/368 (63%), Gaps = 82/368 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+++TNF +RMDT+A++LYYP KPL TTR                              
Sbjct: 369 MGIFLTNFLIRMDTMANILYYPQKPLATTR------------------------------ 398

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 399 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 443

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+F+RSY D E      Q EQFEKP+R T   M++  YDKLDDDG+IAPG  V+G+D++I
Sbjct: 444 SMFYRSYMDLEKTSGVQQLEQFEKPSRDTTIRMKHGTYDKLDDDGLIAPGTGVNGEDIII 503

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E+GIVDQV++T N DG+KF KIRVRS R
Sbjct: 504 GKTAPIPPDSEELGQRTRNHTRRDVSTPLKSTESGIVDQVLVTTNADGHKFVKIRVRSTR 563

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           +PQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 564 VPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLS 623

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D + V+ +S  L++ GY  RG EVM++GHTGRK+ AQV+LGPTY
Sbjct: 624 KVATLIGNEGDATPFTD-LTVESVSRFLRQKGYHSRGLEVMYHGHTGRKLQAQVYLGPTY 682

Query: 325 YQRLKHMV 332
           YQRLKHMV
Sbjct: 683 YQRLKHMV 690


>gi|46277285|gb|AAS86833.1| RNA polymerase II second largest subunit, partial [Rhododendron
           macrophyllum]
          Length = 549

 Score =  353 bits (906), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 186/373 (49%), Positives = 231/373 (61%), Gaps = 84/373 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+  RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 225 MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA----------------------------- 255

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 256 ----------------MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 299

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY+D E K     +E F +P+R    GMR+  YDKLDDDG+  PG RVSG+DVVI
Sbjct: 300 SLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVVI 359

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT   P  +DE +G   R+++RD ST LR+SETG+VDQV+LT N DG +F K+RVRSVR
Sbjct: 360 GKTT--PIAQDEAQGPAARYTRRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVR 417

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 418 IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTMEGITPDIIVNPHAIPSRMTIGQLIECIMG 477

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V+++ G+ GDATPF D V V  IS  L + GYQ  G+    BGHTGR++ + +FLGPTY
Sbjct: 478 KVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQCVGSRPCTBGHTGRRLTSMIFLGPTY 536

Query: 325 YQRLKHMVDDKIH 337
           YQRLKHMVDDKIH
Sbjct: 537 YQRLKHMVDDKIH 549


>gi|124263396|gb|ABH09761.2| RNA polymerase II second largest subunit [Urocystis colchici]
          Length = 707

 Score =  353 bits (906), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 183/377 (48%), Positives = 238/377 (63%), Gaps = 84/377 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGVY+TN+ +RMDT+A++LYYP KPL TTR                              
Sbjct: 378 MGVYLTNYQMRMDTMANILYYPQKPLATTR------------------------------ 407

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+LRFRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 408 ---------------SMEHLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 452

Query: 121 SVFFRSYKDAESKRIGDQ-EEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+++R+Y  AE K++G    E+FEKP+R     +++  YDK+D DG++ PG RVSGDD++
Sbjct: 453 SLYYRAYM-AEEKKVGVMIMEEFEKPSRDNTIRLKHGTYDKIDADGMVPPGTRVSGDDII 511

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  LP + +EL   +K  +K+D S  L+++E GI+DQV+LT N +G KF K+RVRS 
Sbjct: 512 IGKTAPLPPDSEELGLRSKTHTKKDVSISLKSTENGIIDQVLLTTNANGNKFVKVRVRST 571

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           R+PQ GDKFASRHGQKGT GI YRQE                                  
Sbjct: 572 RVPQTGDKFASRHGQKGTIGITYRQEDMPFTSEGVTPDIIINPHAIPSRMTIGHLVECLL 631

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             V++  G+ GDATPF + + V+ +S++L+  GY  RG EVM+NGHTGRK+ AQ +LGPT
Sbjct: 632 SKVATLSGQEGDATPFTE-LTVEAVSSILRGLGYHSRGLEVMYNGHTGRKLQAQCYLGPT 690

Query: 324 YYQRLKHMVDDKIHSRA 340
           YYQRLKHMVDDKIHSRA
Sbjct: 691 YYQRLKHMVDDKIHSRA 707


>gi|52699884|gb|AAU87003.1| DNA-dependent RNA polymerase II second largest subunit
           [Stereocaulon paschale]
          Length = 717

 Score =  353 bits (905), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 189/374 (50%), Positives = 236/374 (63%), Gaps = 84/374 (22%)

Query: 2   GVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDS 61
           GV++TN+ VRMDT+A++LYYP KPL TTR                               
Sbjct: 391 GVFLTNYDVRMDTMANILYYPQKPLATTR------------------------------- 419

Query: 62  VILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRS 121
                         SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FRS
Sbjct: 420 --------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRS 465

Query: 122 VFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           +F+R+Y D E KRIG    E+FEKP R     +++  YDKLDDDGI+APG+RVSG+D++I
Sbjct: 466 LFYRAYTDQE-KRIGMALVEEFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIII 524

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +  + +EL   TK   KRD ST LR++E GIVDQV+L+ N DG +F K+R+R+ +
Sbjct: 525 GKTAPIAPDAEELGQRTKLHVKRDASTPLRSTENGIVDQVLLSTNADGLRFAKVRMRTTK 584

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 585 IPQIGDKFASRHGQKGTIGITYRQEDMPFTREGVVPDLIINPHAIPSRMTIAHLIECQLS 644

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPTY
Sbjct: 645 KVSSLRGFEGDATPFTE-VTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTY 703

Query: 325 YQRLKHMVDDKIHS 338
           YQRL+HMVD KI +
Sbjct: 704 YQRLRHMVDXKIXA 717


>gi|52699866|gb|AAU86994.1| DNA-dependent RNA polymerase II second largest subunit [Rhizocarpon
           disporum]
          Length = 716

 Score =  353 bits (905), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 189/373 (50%), Positives = 235/373 (63%), Gaps = 84/373 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 389 MGVFLTNYDQRMDTMANILYYPQKPLATTR------------------------------ 418

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+V+RG FR
Sbjct: 419 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSVDRGLFR 463

Query: 121 SVFFRSYKDAESKRIGDQ-EEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+R+Y D E KR+G    EQFEKP R     +++  YDKLDDDGI+APG+R+SG+D++
Sbjct: 464 SLFYRAYTDQE-KRVGTSVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRISGEDII 522

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK   KRD ST LR++E GIVDQV+LT N +G +F K+R+R+ 
Sbjct: 523 IGKTAPIAPDAEELGQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTT 582

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 583 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGIVPDLIINPHAIPSRMTIAHLIECQL 642

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF D V V  +S+LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 643 SKVSSLRGFEGDATPFTD-VTVDSVSSLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 701

Query: 324 YYQRLKHMVDDKI 336
           YYQRL+HMV  KI
Sbjct: 702 YYQRLRHMVXXKI 714


>gi|119644004|gb|ABL85600.1| RNA polymerase II second largest subunit [Lecidea fuscoatra]
          Length = 707

 Score =  353 bits (905), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 189/373 (50%), Positives = 236/373 (63%), Gaps = 84/373 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 382 MGVFLTNYDQRMDTMANILYYPQKPLATTR------------------------------ 411

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 412 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 456

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+R+Y D E KR+G    E+FEKP R     +++  YDKLDDDGI+APG+RVSG+D++
Sbjct: 457 SLFYRAYTDQE-KRVGMSVVEEFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDII 515

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK   KRD ST LR++E GIVDQV+LT N +G +F K+R+R+ 
Sbjct: 516 IGKTAPIAPDAEELGLRTKLHMKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTT 575

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 576 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQL 635

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 636 SKVSSLRGFEGDATPFTE-VTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 694

Query: 324 YYQRLKHMVDDKI 336
           YYQRL+HMVDDKI
Sbjct: 695 YYQRLRHMVDDKI 707


>gi|120561253|gb|ABM27011.1| RNA polymerase II second largest subunit, partial [Funneliformis
           mosseae]
          Length = 883

 Score =  353 bits (905), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 184/368 (50%), Positives = 230/368 (62%), Gaps = 82/368 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+ +RMDTLA++LYYP KPLVTTR+                             
Sbjct: 562 MGIYVTNYQLRMDTLANILYYPQKPLVTTRA----------------------------- 592

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+LRFRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 593 ----------------MEFLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 636

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+F+RSY D E K      E+FEKP ++T   +++  Y+KL++DG+IAPG RVSGDD++I
Sbjct: 637 SIFYRSYMDQEKKVGMLTIEEFEKPTKETTLRLKHGTYEKLEEDGLIAPGTRVSGDDIII 696

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GK   +  +  EL       +KRD ST +R++ETGIVDQVM+T N +G KF K+RVRS R
Sbjct: 697 GKVTPISPDTVELGQRKTSHTKRDASTPMRSTETGIVDQVMVTTNAEGMKFVKVRVRSTR 756

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           +PQ+GDKFASRHGQKGT GI YRQE                                   
Sbjct: 757 VPQMGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDLVINPHAIPSRMTIGHMVECLLG 816

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            VS+  G+ GDATPF D V V+ IS  L+  GYQ RG EVM+NGHTGRK++AQVFLGPTY
Sbjct: 817 KVSTLTGQEGDATPFTD-VTVEAISQSLRSQGYQSRGFEVMYNGHTGRKLSAQVFLGPTY 875

Query: 325 YQRLKHMV 332
           YQRLKHMV
Sbjct: 876 YQRLKHMV 883


>gi|110666973|gb|ABG81887.1| RNA polymerase II second largest subunit [Physcia aipolia]
          Length = 718

 Score =  353 bits (905), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 185/372 (49%), Positives = 229/372 (61%), Gaps = 82/372 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+  RM+T++H+LYYP KPL TTR                              
Sbjct: 393 MGVFLTNYDQRMETMSHILYYPQKPLATTR------------------------------ 422

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAI CY+GYNQ DSVI+N S+++RG FR
Sbjct: 423 ---------------SMEYLKFRELPAGQNAIVAIACYSGYNQGDSVIMNQSSIDRGLFR 467

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+F+RSY D E K      E FEKP R      +N  YDKLDDDG+I PG RVSG+D++I
Sbjct: 468 SLFYRSYTDQEKKIGAHVVEAFEKPMRSDTLRTKNGTYDKLDDDGLIVPGARVSGEDIII 527

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +  + +E+   TK  +KRD ST LR++E+G+VDQV+LT N +G KF K+R+R+ +
Sbjct: 528 GKTAPIAPDAEEMGQRTKLHTKRDASTPLRSTESGLVDQVLLTTNAEGLKFVKVRMRTTK 587

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 588 IPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLS 647

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            VSS +G  GDATPF + V V  +S LL E+GYQ RG E+M+NGHTGRK+ AQVFLGPTY
Sbjct: 648 KVSSLRGFEGDATPFTE-VTVDSVSRLLHEHGYQSRGFEIMYNGHTGRKLVAQVFLGPTY 706

Query: 325 YQRLKHMVDDKI 336
           YQRL+HMVDDKI
Sbjct: 707 YQRLRHMVDDKI 718


>gi|120561255|gb|ABM27012.1| RNA polymerase II second largest subunit, partial [Funneliformis
           mosseae]
          Length = 883

 Score =  352 bits (904), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 184/368 (50%), Positives = 230/368 (62%), Gaps = 82/368 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+ +RMDTLA++LYYP KPLVTTR+                             
Sbjct: 562 MGIYVTNYQLRMDTLANILYYPQKPLVTTRA----------------------------- 592

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+LRFRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 593 ----------------MEFLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 636

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+F+RSY D E K      E+FEKP ++T   +++  Y+KL++DG+IAPG RVSGDD++I
Sbjct: 637 SIFYRSYMDQEKKVGMLTIEEFEKPTKETTLRLKHGTYEKLEEDGLIAPGTRVSGDDIII 696

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GK   +  +  EL       +KRD ST +R++ETGIVDQVM+T N +G KF K+RVRS R
Sbjct: 697 GKVTPISPDTVELGQRKTTHTKRDASTPMRSTETGIVDQVMVTTNAEGMKFVKVRVRSTR 756

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           +PQ+GDKFASRHGQKGT GI YRQE                                   
Sbjct: 757 VPQMGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDLVINPHAIPSRMTIGHMVECLLG 816

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            VS+  G+ GDATPF D V V+ IS  L+  GYQ RG EVM+NGHTGRK++AQVFLGPTY
Sbjct: 817 KVSTLTGQEGDATPFTD-VTVEAISQSLRSQGYQSRGFEVMYNGHTGRKLSAQVFLGPTY 875

Query: 325 YQRLKHMV 332
           YQRLKHMV
Sbjct: 876 YQRLKHMV 883


>gi|52699818|gb|AAU86971.1| DNA-dependent RNA polymerase II second largest subunit [Gyalecta
           ulmi]
          Length = 711

 Score =  352 bits (904), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 189/375 (50%), Positives = 238/375 (63%), Gaps = 84/375 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TNF  RMDT+A++LYYP KPL TTR                              
Sbjct: 384 MGVFLTNFDERMDTMANILYYPQKPLATTR------------------------------ 413

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI++ S+++RG FR
Sbjct: 414 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMSQSSIDRGLFR 458

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+RSY + E KR+G    EQFEKP R     +++  Y+KLDDDGIIAPG+RVSG+D++
Sbjct: 459 SLFYRSYVEQE-KRVGMSLVEQFEKPLRSETLRVKHGTYEKLDDDGIIAPGVRVSGEDII 517

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK  +KRD ST LR +E+GIVD+V+LT N +G KF K+R+R+ 
Sbjct: 518 IGKTAPIAPDAEELGQRTKLHTKRDASTPLRTTESGIVDRVLLTTNAEGLKFVKVRMRTT 577

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 578 KIPQIGDKFASRHGQKGTIGITYRQEDMPFSREGITPDLIINPHAIPSRMTIAHLIECQL 637

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + V V  +S LL+E+GYQ RG E+M+NGHTGRK+ AQVFLGPT
Sbjct: 638 SKVSSLRGFEGDATPFTE-VTVDSVSRLLREHGYQSRGFEMMYNGHTGRKLVAQVFLGPT 696

Query: 324 YYQRLKHMVDDKIHS 338
           YYQRL+HMVDDKI +
Sbjct: 697 YYQRLRHMVDDKIXA 711


>gi|113957140|gb|ABI49100.1| RNA polymerase II second largest subunit [Lobaria scrobiculata]
          Length = 714

 Score =  352 bits (904), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 187/373 (50%), Positives = 236/373 (63%), Gaps = 84/373 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TNF  RMDT+A++LYYP KPL TTR                              
Sbjct: 389 MGVFLTNFDQRMDTMANILYYPQKPLATTR------------------------------ 418

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+ +RG FR
Sbjct: 419 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSTDRGLFR 463

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+R+Y D E KRIG +  EQFEKP RQ    +++  YDKLDDDGI+APG+RVSG+D++
Sbjct: 464 SLFYRAYTDQE-KRIGMNVVEQFEKPFRQDTLKLKHGTYDKLDDDGIVAPGVRVSGEDII 522

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +E+   TK   KRD ST LR++E GIVDQV++T N +G +F K+R+R+ 
Sbjct: 523 IGKTAPIAPDAEEMGQRTKAHIKRDASTPLRSTENGIVDQVLITTNAEGLRFVKVRMRTT 582

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 583 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTREGVVPDLIINPHAIPSRMTIAHLIECQL 642

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             V + +G  GDATPF D V V  +S LL+++GYQ RG E+M++GHTGRK+ AQVFLGPT
Sbjct: 643 SKVGTLRGLEGDATPFTD-VTVDSVSKLLRDHGYQSRGFEIMYHGHTGRKMMAQVFLGPT 701

Query: 324 YYQRLKHMVDDKI 336
           YYQRL+HMVDDKI
Sbjct: 702 YYQRLRHMVDDKI 714


>gi|103001877|gb|ABF71525.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
           flavum]
          Length = 714

 Score =  352 bits (904), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 191/373 (51%), Positives = 234/373 (62%), Gaps = 84/373 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 387 MGVFLTNYDQRMDTMANILYYPQKPLATTR------------------------------ 416

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 417 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 461

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+RSY D E KRIG    EQFEKP R     +++  YDKLDDDGI+APG+RVSG+D++
Sbjct: 462 SLFYRSYTDQE-KRIGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDII 520

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK   KRD ST LR++E GIVDQV+LT N +G KF K+R+R+ 
Sbjct: 521 IGKTAPISPDAEELGQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLKFVKVRMRTT 580

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 581 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTKEGVVPDLIINPHAIPSRMTIAHLIECQL 640

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 641 SKVSSLRGFEGDATPFTE-VTVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 699

Query: 324 YYQRLKHMVDDKI 336
           YYQRL+HMV  KI
Sbjct: 700 YYQRLRHMVXXKI 712


>gi|119644196|gb|ABL85612.1| RNA polymerase II second largest subunit [Physconia muscigena]
          Length = 718

 Score =  352 bits (904), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 186/373 (49%), Positives = 236/373 (63%), Gaps = 84/373 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+  RM+T++H+LYYP KPL TTR                              
Sbjct: 393 MGVFLTNYDQRMETMSHILYYPQKPLATTR------------------------------ 422

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 423 ---------------SMEYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 467

Query: 121 SVFFRSYKDAESKRIGDQE-EQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+RSY D E KRIG    E+FEKP R     +++  YDKLD+DG+I PG RVSG+D++
Sbjct: 468 SLFYRSYTDQE-KRIGTNVLEKFEKPMRSDTLKLKHGTYDKLDEDGLIIPGARVSGEDII 526

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +E+   TK  +KRD ST LR++E+G+VDQV+LT N +G +F K+R+R+ 
Sbjct: 527 IGKTAPIAPDAEEMGQRTKLHTKRDASTPLRSTESGLVDQVLLTTNAEGLRFVKVRMRTT 586

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           ++PQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 587 KVPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQL 646

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 647 SKVSSLRGFEGDATPFTE-VTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 705

Query: 324 YYQRLKHMVDDKI 336
           YYQRL+HMVDDKI
Sbjct: 706 YYQRLRHMVDDKI 718


>gi|52699770|gb|AAU86947.1| DNA-dependent RNA polymerase II second largest subunit [Acarospora
           canadensis]
          Length = 713

 Score =  352 bits (904), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 191/373 (51%), Positives = 234/373 (62%), Gaps = 84/373 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV +TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 386 MGVXLTNYDQRMDTMANILYYPQKPLATTR------------------------------ 415

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 416 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 460

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+RSY D E KRIG    EQFEKP R     +++  YDKLDDDGI+APG+RVSG+D++
Sbjct: 461 SLFYRSYTDQE-KRIGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDII 519

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK   KRD ST LR++E GIVDQV+LT N +G +F K+R+R+ 
Sbjct: 520 IGKTAPIAPDAEELGQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTT 579

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 580 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTKEGVVPDLIINPHAIPSRMTIAHLIECQL 639

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 640 SKVSSLRGFEGDATPFTE-VTVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 698

Query: 324 YYQRLKHMVDDKI 336
           YYQRL+HMVD KI
Sbjct: 699 YYQRLRHMVDXKI 711


>gi|2736125|gb|AAB94063.1| RPB140 [Ginkgo biloba]
          Length = 555

 Score =  352 bits (903), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 188/373 (50%), Positives = 237/373 (63%), Gaps = 86/373 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+ +RMDTLA VLYYP KPLVTTR+                             
Sbjct: 231 MGIYVTNYQLRMDTLAFVLYYPQKPLVTTRA----------------------------- 261

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQE SVI+N S+++RG+FR
Sbjct: 262 ----------------MEHLHFRQLPAGINAIVAISCYSGYNQEGSVIMNQSSIDRGFFR 305

Query: 121 SVFFRSYKDAESKRIGDQ-EEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+R+Y+D E KR+G   +E+F +PNR+   GMR+  YDKLDDDG+  PG RVSG+DV+
Sbjct: 306 SLFYRAYRD-EEKRMGTLVKEEFGRPNRENTTGMRHGSYDKLDDDGLAPPGTRVSGEDVI 364

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGK  T P +  +  G   R++KRD ST LR+SE+G+VDQV+LT N DG +F KIR+RSV
Sbjct: 365 IGK--TSPISRMKQGGQVARYTKRDQSTSLRHSESGMVDQVLLTTNADGLRFVKIRMRSV 422

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           RIPQIGDKF+SRHGQKGT G+ Y QE                                  
Sbjct: 423 RIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIM 482

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGRK++A +FLGPT
Sbjct: 483 GKVAAHVGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRKLSAMIFLGPT 541

Query: 324 YYQRLKHMVDDKI 336
           YYQRLKHMVDDKI
Sbjct: 542 YYQRLKHMVDDKI 554


>gi|78100240|gb|ABB20921.1| RNA polymerase II second largest subunit, partial [Rhodotorula
           hordea]
          Length = 695

 Score =  352 bits (903), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 185/370 (50%), Positives = 230/370 (62%), Gaps = 82/370 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+ VRMDT+A++LYYP KPL TTR                              
Sbjct: 372 MGVFLTNYQVRMDTMANILYYPQKPLATTR------------------------------ 401

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL FRELPAG N+IVAI+CY+GYNQEDSVILN S+++RG FR
Sbjct: 402 ---------------SMEYLHFRELPAGQNAIVAIMCYSGYNQEDSVILNQSSIDRGLFR 446

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S ++RSY D E K    Q E+FEKP R T   +++  Y+KL+ DGII  G RV+G+D++I
Sbjct: 447 SFYYRSYMDQEKKSGAIQMEEFEKPTRDTTLRLKHGTYEKLEADGIIGLGERVAGEDIII 506

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  LP + +EL   +K  +KRD ST ++++E GI+DQV++T N DG KF KIRVRS R
Sbjct: 507 GKTAPLPPDSEELGQRSKNHTKRDVSTPMKSTENGIIDQVLVTTNQDGLKFVKIRVRSTR 566

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           +P+IGDKFASRHGQKGT GI YR E                                   
Sbjct: 567 VPEIGDKFASRHGQKGTIGITYRHEDMPFSGEGTTPDIIINPHAIPSRMTIGHLVECLLS 626

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            VS+  G  GDATPF++ V V+ ISTLL+E GY  RG EVM+NGHTGRK+ AQV+LGPTY
Sbjct: 627 KVSTISGNEGDATPFSE-VTVEAISTLLKEMGYHSRGLEVMYNGHTGRKLQAQVYLGPTY 685

Query: 325 YQRLKHMVDD 334
           YQRLKHMVDD
Sbjct: 686 YQRLKHMVDD 695


>gi|52699780|gb|AAU86952.1| DNA-dependent RNA polymerase II second largest subunit [Acarospora
           macrospora subsp. macrospora]
          Length = 706

 Score =  352 bits (903), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 190/373 (50%), Positives = 234/373 (62%), Gaps = 84/373 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG  +TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 381 MGXXLTNYDQRMDTMANILYYPQKPLATTR------------------------------ 410

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 411 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 455

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+RSY D E KRIG    EQFEKP R     +++  YDKLDDDGI+APG+RVSG+D++
Sbjct: 456 SLFYRSYTDQE-KRIGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDII 514

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK   KRD ST LR++E GIVDQV+LT N +G +F K+R+R+ 
Sbjct: 515 IGKTAPIAPDAEELGQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTT 574

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           ++PQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 575 KVPQIGDKFASRHGQKGTIGITYRQEDMPFTKEGVVPDLIINPHAIPSRMTIAHLIECQL 634

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 635 SKVSSLRGFEGDATPFTE-VTVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 693

Query: 324 YYQRLKHMVDDKI 336
           YYQRL+HMVDDKI
Sbjct: 694 YYQRLRHMVDDKI 706


>gi|110669606|gb|ABG81898.1| RNA polymerase II second largest subunit [Umbilicaria mammulata]
          Length = 701

 Score =  352 bits (903), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 190/373 (50%), Positives = 234/373 (62%), Gaps = 84/373 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TNF  RMDT+A++LYYP KPL TTR                              
Sbjct: 376 MGVFLTNFDQRMDTMANILYYPQKPLATTR------------------------------ 405

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 406 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 450

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+R Y D E KRIG    EQFE+P R     +++  YDKLDDDGI+APG+RVSG+D++
Sbjct: 451 SLFYRCYTDQE-KRIGMSVVEQFERPMRSDTLRLKHGTYDKLDDDGIVAPGVRVSGEDII 509

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK   KRD ST LR++E GIVDQV+LT N +G +F K+R+R+ 
Sbjct: 510 IGKTAPIAPDAEELGQRTKTHVKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTT 569

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YR E                                  
Sbjct: 570 KIPQIGDKFASRHGQKGTIGITYRSEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQL 629

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 630 SKVSSLRGFEGDATPFTE-VTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 688

Query: 324 YYQRLKHMVDDKI 336
           YYQRL+HMVDDKI
Sbjct: 689 YYQRLRHMVDDKI 701


>gi|119644296|gb|ABL85617.1| RNA polymerase II second largest subunit [uncultured Ascomycota]
          Length = 326

 Score =  352 bits (903), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 187/373 (50%), Positives = 234/373 (62%), Gaps = 84/373 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV +TNF+VRMDT+A+VLYYP KPL TTR                              
Sbjct: 1   MGVTLTNFNVRMDTMANVLYYPQKPLATTR------------------------------ 30

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FR+LPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 31  ---------------SMEFLKFRDLPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 75

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+R+Y D E KR+G    E FEKP R     M+   YDKLDDDGII+PG RVSG+D++
Sbjct: 76  SLFYRAYLDQE-KRVGMSVVEAFEKPIRSDTLKMKGGTYDKLDDDGIISPGARVSGEDII 134

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK   KRD ST LR++E GI+DQV+LT NV+G KF K+R R+ 
Sbjct: 135 IGKTAPIAPDAEELGQRTKLHVKRDVSTPLRSTENGIIDQVLLTTNVEGLKFVKVRTRTT 194

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           ++PQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 195 KVPQIGDKFASRHGQKGTIGITYRQEDMPFSADGLVPDIIINPHAIPSRMTIAHLIECLL 254

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             V++  G+ GDATPF + V +  IS LL+++G+Q RG EVM+NGHTG+K+ AQVFLGPT
Sbjct: 255 SKVAALTGQEGDATPFTE-VTITSISALLEQHGFQKRGFEVMYNGHTGKKLAAQVFLGPT 313

Query: 324 YYQRLKHMVDDKI 336
           YYQRL+HMVDDKI
Sbjct: 314 YYQRLRHMVDDKI 326


>gi|94410936|gb|ABF18586.1| RNA polymerase II second largest subunit, partial [Camarophyllopsis
           hymenocephala]
          Length = 696

 Score =  352 bits (903), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 182/368 (49%), Positives = 233/368 (63%), Gaps = 82/368 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF +RMDT+A++LYYP KPL TTR                              
Sbjct: 375 MGIYLTNFLIRMDTMANILYYPQKPLATTR------------------------------ 404

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 405 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 449

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP R T   M++  YDKL+DDG+IAPG  V+G+D++I
Sbjct: 450 SIYYRSYMDLEKKSGVQQLEEFEKPTRDTTLRMKHGTYDKLEDDGLIAPGTGVAGEDIII 509

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E+GIVDQV++T N +G KF K+RVRS R
Sbjct: 510 GKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRSTR 569

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 570 IPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLS 629

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF + + V+ +ST L++ GYQ RG EVM++GHTGRK+ AQV+LGPTY
Sbjct: 630 KVATLIGNEGDATPFTE-LTVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTY 688

Query: 325 YQRLKHMV 332
           YQRLKHMV
Sbjct: 689 YQRLKHMV 696


>gi|46411496|gb|AAS94318.1| RNA polymerase II [Ostropa barbara]
          Length = 719

 Score =  352 bits (902), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 186/373 (49%), Positives = 238/373 (63%), Gaps = 84/373 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TNF  RMDT+A++LYYP KPL TTR                              
Sbjct: 394 MGVFLTNFDQRMDTMANILYYPQKPLATTR------------------------------ 423

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N ++++RG FR
Sbjct: 424 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQTSIDRGLFR 468

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+R+Y D E KRIG +  EQFEKP R     +++  YDKLD+DGIIAPG+RVSG+D++
Sbjct: 469 SLFYRAYTDQE-KRIGMNVVEQFEKPYRADTLKLKHGTYDKLDEDGIIAPGVRVSGEDII 527

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK  +KRD ST LR++E GIVDQV++T N +G +F K+R+R+ 
Sbjct: 528 IGKTAPMAPDAEELGQRTKAHTKRDASTPLRSTENGIVDQVLITTNAEGLRFVKVRMRTT 587

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 588 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTRQGIVPDLIINPHAIPSRMTIAHLIECQL 647

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VS+ +G  GDATPF + V V  +S LL+++GYQ RG E+M++GHTGRK+ AQVFLGPT
Sbjct: 648 SKVSTLRGLEGDATPFTE-VTVDSVSKLLRDHGYQSRGFEIMYHGHTGRKMMAQVFLGPT 706

Query: 324 YYQRLKHMVDDKI 336
           YYQRL+HMVDDKI
Sbjct: 707 YYQRLRHMVDDKI 719


>gi|119644256|gb|ABL85615.1| RNA polymerase II second largest subunit [Degelia plumbea]
          Length = 718

 Score =  352 bits (902), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 189/373 (50%), Positives = 235/373 (63%), Gaps = 84/373 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 393 MGVFLTNYEQRMDTMANILYYPQKPLATTR------------------------------ 422

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 423 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 467

Query: 121 SVFFRSYKDAESKRIGDQ-EEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+RSY D E KR+G    EQFEKP +     +++  YDKLDDDGI++PG+RV GDD+V
Sbjct: 468 SLFYRSYTDQE-KRVGMTIVEQFEKPMKSDTLKLKHGTYDKLDDDGIVSPGVRVFGDDIV 526

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK   KRD ST LR++E GIVDQV+LT N +G +F K+R+R+ 
Sbjct: 527 IGKTAPIAPDAEELGQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTT 586

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           ++PQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 587 KVPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQL 646

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 647 SKVSSLRGFEGDATPFTE-VTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 705

Query: 324 YYQRLKHMVDDKI 336
           YYQRL+HMVDDKI
Sbjct: 706 YYQRLRHMVDDKI 718


>gi|52699772|gb|AAU86948.1| DNA-dependent RNA polymerase II second largest subunit [Acarospora
           cervina]
          Length = 714

 Score =  352 bits (902), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 190/373 (50%), Positives = 234/373 (62%), Gaps = 84/373 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 387 MGVFLTNYDQRMDTMANILYYPQKPLATTR------------------------------ 416

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 417 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 461

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+RSY D E KRIG    EQFEKP R     +++  YDKLDDDGI+APG+RVSG+D++
Sbjct: 462 SLFYRSYTDQE-KRIGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDII 520

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK   KRD ST LR++E GIVDQV+LT N +G +F K+R+R+ 
Sbjct: 521 IGKTAPIAPDAEELGQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTT 580

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 581 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTNQGVVPDLIINPHAIPSRMTIAHLIECQL 640

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+  QVFLGPT
Sbjct: 641 SKVSSLRGFEGDATPFTE-VTVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVGQVFLGPT 699

Query: 324 YYQRLKHMVDDKI 336
           YYQRL+HMVD KI
Sbjct: 700 YYQRLRHMVDXKI 712


>gi|89274938|gb|ABD65910.1| RNA polymerase II second largest subunit, partial [Malassezia
           pachydermatis]
          Length = 693

 Score =  352 bits (902), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 179/372 (48%), Positives = 236/372 (63%), Gaps = 82/372 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+ +RMDT+A++LYYP KPL TTR+                             
Sbjct: 368 MGVFLTNYQIRMDTMANILYYPQKPLATTRA----------------------------- 398

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+LRFRELPAG N+IVAILCY+GYNQEDSVI+N SA++RG FR
Sbjct: 399 ----------------MEHLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSAIDRGLFR 442

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++R+++D E K      E+FEKP R+T   +++  Y+KLD DG++ PG RVSG+D++I
Sbjct: 443 SLYYRTFQDMEKKVGVITMEEFEKPTRETAIRLKHGTYEKLDIDGLVPPGTRVSGEDIII 502

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  LP + DEL   +K  +K+D ST ++++E+GI+DQV++T N +G KF K+RVRS R
Sbjct: 503 GKTAPLPPDSDELGMRSKTHTKKDVSTPMKSTESGIIDQVLITTNGEGAKFVKVRVRSTR 562

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           +PQ+GDKFASRHGQKGT GI YRQE                                   
Sbjct: 563 VPQVGDKFASRHGQKGTIGITYRQEDLPFTAEGITPDIIINPHAIPSRMTIGHLVECLLS 622

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G+ GDATPF D + V+ +S +L   GYQ RG EVM+NGHTGRK+ AQV+LGPTY
Sbjct: 623 KVATLSGQEGDATPFTD-LTVKGVSDILFSLGYQSRGLEVMYNGHTGRKLQAQVYLGPTY 681

Query: 325 YQRLKHMVDDKI 336
           YQRLKHMVDDKI
Sbjct: 682 YQRLKHMVDDKI 693


>gi|46411502|gb|AAS94321.1| RNA polymerase II [Punctelia hypoleucites]
          Length = 705

 Score =  352 bits (902), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 187/373 (50%), Positives = 235/373 (63%), Gaps = 84/373 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 380 MGVFLTNYEQRMDTMANILYYPQKPLATTR------------------------------ 409

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 410 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 454

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+R+Y D E KR+G    EQFEKP R     +++  YDKLDDDG++APG+RVSG+D++
Sbjct: 455 SLFYRAYTDQE-KRVGMSVVEQFEKPMRSDTLRLKHGTYDKLDDDGLVAPGVRVSGEDII 513

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK   KRD ST LR++E GIVDQV+L+ N +G +F K+R+R+ 
Sbjct: 514 IGKTAPIAPDAEELGQRTKLHVKRDTSTPLRSTENGIVDQVLLSTNAEGLRFVKVRMRTT 573

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 574 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGMVPDLIINPHAIPSRMTIAHLIECLL 633

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+  QVFLGPT
Sbjct: 634 SKVSSLRGFEGDATPFTE-VTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVTQVFLGPT 692

Query: 324 YYQRLKHMVDDKI 336
           YYQRL+HMVDDKI
Sbjct: 693 YYQRLRHMVDDKI 705


>gi|384492090|gb|AFH96450.1| RNA polymerase II subunit 2, partial [Morchella septimelata]
          Length = 323

 Score =  351 bits (901), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 190/370 (51%), Positives = 235/370 (63%), Gaps = 84/370 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TNF  RMDT+A++LYYP KPL TTR                              
Sbjct: 1   MGVFLTNFAERMDTMANILYYPQKPLATTR------------------------------ 30

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 31  ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 75

Query: 121 SVFFRSYKDAESKRIGDQ-EEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+RSY D E KRIG Q  E+FEKP R     +++  YDKLD+DG++APG+RVSG+D++
Sbjct: 76  SLFYRSYMDQE-KRIGMQVVEEFEKPTRANTLKLKHGTYDKLDEDGLVAPGVRVSGEDII 134

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + DE+    K  +KRD ST LR++E GIVDQVMLT N +G KF K+R+R+ 
Sbjct: 135 IGKTAPIAPDVDEMGQRQKFHTKRDVSTPLRSTENGIVDQVMLTTNAEGLKFVKVRMRTT 194

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 195 KIPQIGDKFASRHGQKGTVGITYRQEDMPFTCEGIVPDLIINPHAIPSRMTIAHLIECQL 254

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF D V V+ +STLL++ GYQ RG EVM+NG+TGRK+  QVFLGPT
Sbjct: 255 SKVSSLRGFEGDATPFTD-VTVESVSTLLRQNGYQSRGFEVMYNGYTGRKLVCQVFLGPT 313

Query: 324 YYQRLKHMVD 333
           YYQRL+HMVD
Sbjct: 314 YYQRLRHMVD 323


>gi|55831373|gb|AAV66545.1| RNA polymerase II second largest subunit [Fomitiporia mediterranea]
          Length = 898

 Score =  351 bits (901), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 183/372 (49%), Positives = 234/372 (62%), Gaps = 82/372 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF +R DT+A++LYYP KPL TTR+                             
Sbjct: 573 MGIYLTNFLMRQDTMANILYYPQKPLATTRA----------------------------- 603

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           MEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 604 ----------------MEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 647

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++R+Y D E +      ++FEKP R T   M++  YDKL+DDG+IAPG+ V GDD++I
Sbjct: 648 SLYYRTYMDQEKRSGAIIVDEFEKPTRDTTLRMKHGTYDKLEDDGLIAPGVNVRGDDIII 707

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  +KRD ST L+++E GIVDQV++T N +G KF KIRVRS R
Sbjct: 708 GKTAPIPPDSEELGQRTRGHTKRDISTPLKSTEQGIVDQVVVTTNAEGTKFVKIRVRSTR 767

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 768 IPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLS 827

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            +++  G  GDATPF D + V  +S++L+E GYQ RG EVM++GHTGRK+ AQV+LGPTY
Sbjct: 828 KLATIVGNEGDATPFTD-LTVDSVSSVLREKGYQSRGLEVMYHGHTGRKLQAQVYLGPTY 886

Query: 325 YQRLKHMVDDKI 336
           YQRLKHMVDDKI
Sbjct: 887 YQRLKHMVDDKI 898


>gi|365927720|gb|AEX07764.1| RNA polymerase II subunit 2 [Junghuhnia nitida]
          Length = 353

 Score =  351 bits (901), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 183/366 (50%), Positives = 231/366 (63%), Gaps = 82/366 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF VRMDT+A++LYYP KPL TTR                              
Sbjct: 34  MGIYLTNFLVRMDTMANILYYPQKPLATTR------------------------------ 63

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYLRFRELPAG N+IVAILCY+GYNQEDSVI+N S+V+RG FR
Sbjct: 64  ---------------SMEYLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSVDRGLFR 108

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP R+    M++  YDKL+DDG+IAPG  V+G+D++I
Sbjct: 109 SMYYRSYMDLEKKSGVQQLEEFEKPTRENTLRMKHGTYDKLEDDGLIAPGTNVNGEDIII 168

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   TK  S+RD ST L+++E+GI+DQV++T N +G KF KIRVRS R
Sbjct: 169 GKTAPIPPDSEELGQRTKTHSRRDVSTPLKSTESGIIDQVLITTNAEGQKFVKIRVRSTR 228

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 229 IPQIGDKFASRHGQKGTIGIAYRQEDMPFTAEGITPDIVINPHAIPSRMTIGHLVECLLS 288

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G+ GDATPF D + V+ +S  L++ GYQ RG E+M++GHTGRK+ AQV+LGPTY
Sbjct: 289 KVATLLGQEGDATPFTD-LTVESVSHFLRDKGYQSRGLEIMYHGHTGRKLQAQVYLGPTY 347

Query: 325 YQRLKH 330
           YQRLKH
Sbjct: 348 YQRLKH 353


>gi|103001231|gb|ABF71498.1| DNA-dependent RNA polymerase II second largest subunit [Acarospora
           scabrida]
          Length = 713

 Score =  351 bits (900), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 189/373 (50%), Positives = 235/373 (63%), Gaps = 84/373 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 386 MGVFLTNYDQRMDTMANILYYPQKPLATTR------------------------------ 415

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 416 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 460

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+RSY D E KRIG    EQFEKP R     +++  YDKLD+DGI+APG+RVSG+D++
Sbjct: 461 SLFYRSYTDQE-KRIGMSVVEQFEKPMRSDTLKLKHGTYDKLDEDGIVAPGVRVSGEDII 519

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK   KRD ST LR++E GIVDQV++T N +G +F K+R+R+ 
Sbjct: 520 IGKTAPIAPDAEELGQRTKLHVKRDVSTPLRSTENGIVDQVLITTNAEGLRFVKVRMRTT 579

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 580 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTKEGIVPDLIINPHAIPSRMTIAHLIECQL 639

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 640 SKVSSLRGFEGDATPFTE-VTVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 698

Query: 324 YYQRLKHMVDDKI 336
           YYQRL+HMVD KI
Sbjct: 699 YYQRLRHMVDXKI 711


>gi|120561257|gb|ABM27013.1| RNA polymerase II second largest subunit, partial [Gigaspora
           gigantea]
          Length = 894

 Score =  351 bits (900), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 184/367 (50%), Positives = 228/367 (62%), Gaps = 82/367 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+ +RMDTLA++LYYP KPLVTTR+                             
Sbjct: 574 MGIYVTNYQLRMDTLANILYYPQKPLVTTRA----------------------------- 604

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+LRFRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 605 ----------------MEFLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 648

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+F+RSY D E K      E+F+KP R+T   +++  Y+KL+DDG+IAPG RVSGDD++I
Sbjct: 649 SIFYRSYMDQEKKVGILSIEEFDKPTRETTLRLKHGTYEKLEDDGLIAPGTRVSGDDIII 708

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GK   +PE+  EL       + RD ST +R++E GIVDQVM+T N +G KF K+RVRS R
Sbjct: 709 GKVTPIPEHTIELGQRKDSHTHRDASTPMRSTENGIVDQVMVTTNAEGMKFVKVRVRSTR 768

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQ+GDKFASRHGQKGT GI YRQE                                   
Sbjct: 769 IPQMGDKFASRHGQKGTIGITYRQEDMPFTSEGITPDLIINPHAIPSRMTIGHLVECLLG 828

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            VS+  G+ GDATPF D V V+ IS  L++ GY  RG EVM+NGHTGRK+ AQVFLGPTY
Sbjct: 829 KVSTLTGQEGDATPFTD-VTVEAISHSLRQNGYHSRGFEVMYNGHTGRKLAAQVFLGPTY 887

Query: 325 YQRLKHM 331
           YQRLKHM
Sbjct: 888 YQRLKHM 894


>gi|52699794|gb|AAU86959.1| DNA-dependent RNA polymerase II second largest subunit [Coenogonium
           leprieurii]
          Length = 716

 Score =  351 bits (900), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 183/372 (49%), Positives = 232/372 (62%), Gaps = 82/372 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TNF  RMDT+A++LYYP KPL TTR                              
Sbjct: 389 MGVFLTNFDERMDTMANILYYPQKPLATTR------------------------------ 418

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 419 ---------------SMEYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 463

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+F+RSY + E     +  EQFEKP R     +++  Y+KLDDDGIIAPG+RVSG+D++I
Sbjct: 464 SLFYRSYVEQEKHLGMEVVEQFEKPLRSETLRLKHGTYEKLDDDGIIAPGVRVSGEDIII 523

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +  N++EL   TK  +KRD ST LR++E GI+D+V++T N +G KF K+R R+ +
Sbjct: 524 GKTAPMRTNDEELGQRTKLHTKRDASTALRSTENGIIDKVLITTNAEGLKFVKVRTRTTK 583

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           +PQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 584 VPQIGDKFASRHGQKGTIGITYRQEDMPFSAQGIVPDLIINPHAIPSRMTIAHLIECQLS 643

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            VSS +G  GDATPF + V V  +S LL+E+GYQ RG E+M+NGHTGRK+ AQ+F GPTY
Sbjct: 644 KVSSLRGFEGDATPFTE-VTVDSVSRLLREHGYQSRGFEIMYNGHTGRKLVAQIFFGPTY 702

Query: 325 YQRLKHMVDDKI 336
           YQRL+HMVD KI
Sbjct: 703 YQRLRHMVDXKI 714


>gi|119644141|gb|ABL85608.1| RNA polymerase II second largest subunit [Punctelia rudecta]
          Length = 718

 Score =  351 bits (900), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 187/373 (50%), Positives = 235/373 (63%), Gaps = 84/373 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 393 MGVFLTNYEQRMDTMANILYYPQKPLATTR------------------------------ 422

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 423 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 467

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+R+Y D E KRIG    EQFEKP R     +++  YDKLDDDG++APG+RVSG+D++
Sbjct: 468 SLFYRAYTDQE-KRIGMSVVEQFEKPMRSDTLRLKHGTYDKLDDDGLVAPGVRVSGEDII 526

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK   KRD ST LR++E GIVDQV+L+ N +G +F K+R+R+ 
Sbjct: 527 IGKTAPIAPDAEELGQRTKLHVKRDTSTPLRSTENGIVDQVLLSTNAEGLRFVKVRMRTT 586

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 587 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGMVPDLIINPHAIPSRMTIAHLIECLL 646

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTG+K+  QVFLGPT
Sbjct: 647 SKVSSLRGFEGDATPFTE-VTVDSVSRLLREHGYQSRGFEVMYNGHTGKKLVTQVFLGPT 705

Query: 324 YYQRLKHMVDDKI 336
           YYQRL+HMVDDKI
Sbjct: 706 YYQRLRHMVDDKI 718


>gi|82504135|gb|ABB80490.1| RNA polymerase II subunit [Symbiotaphrina kochii]
          Length = 714

 Score =  351 bits (900), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 188/370 (50%), Positives = 233/370 (62%), Gaps = 84/370 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGVY+TNF  RMDT+A++LYYP KPL TTR                              
Sbjct: 391 MGVYLTNFDSRMDTMANILYYPQKPLATTR------------------------------ 420

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 421 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 465

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+RSY D E KR+G    EQFEKP R     +++  YDKLD+DGI+APG+RVSG+D++
Sbjct: 466 SLFYRSYTDQE-KRVGMSVVEQFEKPMRSDTLKLKHGTYDKLDEDGIVAPGVRVSGEDII 524

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK   KRD ST LR++E GIVDQV+LT N +G +F K+R+R+ 
Sbjct: 525 IGKTAPIAPDAEELGQRTKLHIKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTT 584

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 585 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTREGVVPDLIINPHAIPSRMTIAHLIECQL 644

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + V V  +S LL+E+GYQ RG E+M+NGHTGRK+ AQVFLGPT
Sbjct: 645 SKVSSLRGFEGDATPFTE-VTVDSVSRLLREHGYQSRGFEIMYNGHTGRKLRAQVFLGPT 703

Query: 324 YYQRLKHMVD 333
           YYQRL+HMVD
Sbjct: 704 YYQRLRHMVD 713


>gi|119644095|gb|ABL85606.1| RNA polymerase II second largest subunit [Parmotrema reticulatum]
          Length = 718

 Score =  351 bits (900), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 187/373 (50%), Positives = 235/373 (63%), Gaps = 84/373 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 393 MGVFLTNYEQRMDTMANILYYPQKPLATTR------------------------------ 422

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 423 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 467

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+R+Y D E KRIG    EQFEKP R     +++  YDKLDDDG++APG+RVSG+D++
Sbjct: 468 SLFYRAYTDQE-KRIGMSVVEQFEKPMRSDTLRLKHGTYDKLDDDGLVAPGVRVSGEDII 526

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK   KRD ST LR++E GIVDQV+L+ N +G +F K+R+R+ 
Sbjct: 527 IGKTAPIAPDAEELGQRTKLHVKRDTSTPLRSTENGIVDQVLLSTNAEGLRFVKVRMRTT 586

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 587 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGMVPDLIINPHAIPSRMTIAHLIECLL 646

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTG+K+  QVFLGPT
Sbjct: 647 SKVSSLRGFEGDATPFTE-VTVDSVSRLLREHGYQSRGFEVMYNGHTGKKLVTQVFLGPT 705

Query: 324 YYQRLKHMVDDKI 336
           YYQRL+HMVDDKI
Sbjct: 706 YYQRLRHMVDDKI 718


>gi|52699827|gb|AAU86975.1| DNA-dependent RNA polymerase II second largest subunit [Lecanora
           concolor]
          Length = 708

 Score =  350 bits (899), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 188/373 (50%), Positives = 234/373 (62%), Gaps = 84/373 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TNF  RMDT+A++LYYP KPL TTR                              
Sbjct: 383 MGVFLTNFDQRMDTMANILYYPQKPLATTR------------------------------ 412

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CYTGYNQEDSVI+N S+++RG FR
Sbjct: 413 ---------------SMEFLKFRELPAGQNAIVAIACYTGYNQEDSVIMNQSSIDRGLFR 457

Query: 121 SVFFRSYKDAESKRIGDQE-EQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+R+Y D E K+IG    EQFEKP R     +++  YDKLDDDG++APG+RVSG+D++
Sbjct: 458 SLFYRAYSDQE-KQIGHSVLEQFEKPMRSETLKLKHGTYDKLDDDGLVAPGVRVSGEDII 516

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK  +KRD ST LR++E GIVDQV+++ N DG +F K+R+R+ 
Sbjct: 517 IGKTAPITADAEELGQRTKAHTKRDISTPLRSTENGIVDQVLMSTNADGLRFAKVRMRTT 576

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 577 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQL 636

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + V V  +S LL+E GY  RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 637 SKVSSLRGFEGDATPFTE-VTVDSVSRLLRENGYHSRGFEVMYNGHTGRKLVAQVFLGPT 695

Query: 324 YYQRLKHMVDDKI 336
           YYQRL+HMVD KI
Sbjct: 696 YYQRLRHMVDXKI 708


>gi|110669604|gb|ABG81897.1| RNA polymerase II second largest subunit [Bacidia schweinitzii]
          Length = 720

 Score =  350 bits (899), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 186/373 (49%), Positives = 237/373 (63%), Gaps = 84/373 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+ VRMDT+A++LYYP KPL TTR                              
Sbjct: 395 MGVFLTNYDVRMDTMANILYYPQKPLATTR------------------------------ 424

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 425 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 469

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+R+Y D E KR+G +  EQFEKP R     +++  YDKLDDDGI+APG+R+SG+D++
Sbjct: 470 SLFYRAYTDQE-KRVGMNVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRMSGEDII 528

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK   KRD ST LR++E GIVDQV+L+ N +G +F K+R+R+ 
Sbjct: 529 IGKTAPIAPDAEELGQRTKLHVKRDTSTPLRSTENGIVDQVLLSTNSEGLRFVKVRMRTT 588

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           ++PQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 589 KVPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGIVPDLIINPHAIPSRMTIAHLIECQL 648

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VS+ +G  GDATPF + V V  +S LL+ +GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 649 SKVSALQGCEGDATPFTE-VTVDSVSKLLRVHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 707

Query: 324 YYQRLKHMVDDKI 336
           YYQRL+HMVDDKI
Sbjct: 708 YYQRLRHMVDDKI 720


>gi|94410922|gb|ABF18580.1| RNA polymerase II second largest subunit, partial [Hygrophorus
           auratocephalus]
          Length = 701

 Score =  350 bits (899), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 180/368 (48%), Positives = 232/368 (63%), Gaps = 82/368 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF +RMDT+A++LYYP KPL TTR                              
Sbjct: 380 MGIYLTNFLIRMDTMANILYYPQKPLATTR------------------------------ 409

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 410 ---------------SMEYLKFRELPAGQNTIVAILCYSGYNQEDSVIMNQSSIDRGLFR 454

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP R+    M++  YDKL+DDG+IAPG  V G+D++I
Sbjct: 455 SIYYRSYMDLEKKSGVQQLEEFEKPTRENTLRMKHGTYDKLEDDGLIAPGTGVRGEDIII 514

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST ++++E+GIVDQV++T N +G KF K+RVRS R
Sbjct: 515 GKTAPIPPDSEELGQRTRSHTRRDVSTPMKSTESGIVDQVLITTNSEGQKFVKVRVRSTR 574

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           +PQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 575 VPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLIECLLS 634

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D + V+ +ST L++ GYQ RG EVM++GHTGRK+ AQV+LGPTY
Sbjct: 635 KVATLIGNEGDATPFTD-LTVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTY 693

Query: 325 YQRLKHMV 332
           YQRLKHMV
Sbjct: 694 YQRLKHMV 701


>gi|374088644|gb|AEY83498.1| RNA polymerase II second largest subunit, partial [Athelia rolfsii]
 gi|374088646|gb|AEY83499.1| RNA polymerase II second largest subunit, partial [Athelia rolfsii]
 gi|374088648|gb|AEY83500.1| RNA polymerase II second largest subunit, partial [Athelia rolfsii]
 gi|374088650|gb|AEY83501.1| RNA polymerase II second largest subunit, partial [Athelia rolfsii]
 gi|374088652|gb|AEY83502.1| RNA polymerase II second largest subunit, partial [Athelia rolfsii]
 gi|374088654|gb|AEY83503.1| RNA polymerase II second largest subunit, partial [Athelia rolfsii]
 gi|374088656|gb|AEY83504.1| RNA polymerase II second largest subunit, partial [Athelia rolfsii]
 gi|374088658|gb|AEY83505.1| RNA polymerase II second largest subunit, partial [Athelia rolfsii]
 gi|374088660|gb|AEY83506.1| RNA polymerase II second largest subunit, partial [Athelia rolfsii]
 gi|374088662|gb|AEY83507.1| RNA polymerase II second largest subunit, partial [Athelia rolfsii]
 gi|374088664|gb|AEY83508.1| RNA polymerase II second largest subunit, partial [Athelia rolfsii]
 gi|374088666|gb|AEY83509.1| RNA polymerase II second largest subunit, partial [Athelia rolfsii]
 gi|374088668|gb|AEY83510.1| RNA polymerase II second largest subunit, partial [Athelia rolfsii]
 gi|374088670|gb|AEY83511.1| RNA polymerase II second largest subunit, partial [Athelia rolfsii]
 gi|374088672|gb|AEY83512.1| RNA polymerase II second largest subunit, partial [Athelia rolfsii]
 gi|374088674|gb|AEY83513.1| RNA polymerase II second largest subunit, partial [Athelia rolfsii]
 gi|374088676|gb|AEY83514.1| RNA polymerase II second largest subunit, partial [Athelia rolfsii]
 gi|374088678|gb|AEY83515.1| RNA polymerase II second largest subunit, partial [Athelia rolfsii]
 gi|374088680|gb|AEY83516.1| RNA polymerase II second largest subunit, partial [Athelia rolfsii]
 gi|374088682|gb|AEY83517.1| RNA polymerase II second largest subunit, partial [Athelia rolfsii]
 gi|374088684|gb|AEY83518.1| RNA polymerase II second largest subunit, partial [Athelia rolfsii]
 gi|374088686|gb|AEY83519.1| RNA polymerase II second largest subunit, partial [Athelia rolfsii]
 gi|374088688|gb|AEY83520.1| RNA polymerase II second largest subunit, partial [Athelia rolfsii]
 gi|374088690|gb|AEY83521.1| RNA polymerase II second largest subunit, partial [Athelia rolfsii]
 gi|374088692|gb|AEY83522.1| RNA polymerase II second largest subunit, partial [Sclerotium
           delphinii]
 gi|374088694|gb|AEY83523.1| RNA polymerase II second largest subunit, partial [Athelia rolfsii]
 gi|374088696|gb|AEY83524.1| RNA polymerase II second largest subunit, partial [Athelia rolfsii]
 gi|374088698|gb|AEY83525.1| RNA polymerase II second largest subunit, partial [Athelia rolfsii]
 gi|374088700|gb|AEY83526.1| RNA polymerase II second largest subunit, partial [Athelia rolfsii]
 gi|374088702|gb|AEY83527.1| RNA polymerase II second largest subunit, partial [Athelia rolfsii]
 gi|374088704|gb|AEY83528.1| RNA polymerase II second largest subunit, partial [Athelia rolfsii]
 gi|374088706|gb|AEY83529.1| RNA polymerase II second largest subunit, partial [Athelia rolfsii]
 gi|374088708|gb|AEY83530.1| RNA polymerase II second largest subunit, partial [Athelia rolfsii]
 gi|374088710|gb|AEY83531.1| RNA polymerase II second largest subunit, partial [Athelia rolfsii]
 gi|374088712|gb|AEY83532.1| RNA polymerase II second largest subunit, partial [Athelia rolfsii]
          Length = 341

 Score =  350 bits (898), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 180/371 (48%), Positives = 234/371 (63%), Gaps = 82/371 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+++TNF +RMDT+A++LYYP KPL TTR                              
Sbjct: 15  MGIFLTNFLIRMDTMANILYYPQKPLATTR------------------------------ 44

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 45  ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 89

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP+R+    M++  YDK++DDG+IAPG  V G+D++I
Sbjct: 90  SIYYRSYMDLEKKSGIQQLEEFEKPSRENTLRMKHGTYDKIEDDGLIAPGTGVRGEDIII 149

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E GIVDQV++T N +G KF K+RVRS R
Sbjct: 150 GKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVDQVLITTNHEGQKFVKVRVRSTR 209

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 210 IPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDLIINPHAIPSRMTIGHLVECLLS 269

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D + V+ +S  L++ GYQ RG EVM++GHTG+K+ AQ++LGPTY
Sbjct: 270 KVATLIGNEGDATPFTD-LTVESVSKFLRQRGYQSRGLEVMYHGHTGKKLQAQIYLGPTY 328

Query: 325 YQRLKHMVDDK 335
           YQRLKHMVDDK
Sbjct: 329 YQRLKHMVDDK 339


>gi|119644161|gb|ABL85609.1| RNA polymerase II second largest subunit [Vulpicida pinastri]
          Length = 718

 Score =  350 bits (897), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 187/373 (50%), Positives = 235/373 (63%), Gaps = 84/373 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 393 MGVFLTNYQQRMDTMANILYYPQKPLATTR------------------------------ 422

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 423 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 467

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+R+Y D E KRIG    EQFEKP R     +++  YDKLD+DG++APG+RVSG+D++
Sbjct: 468 SLFYRAYTDQE-KRIGMSVVEQFEKPMRSDTLRLKHGTYDKLDEDGLVAPGVRVSGEDII 526

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK   KRD ST LR++E GIVDQV+L+ N +G +F K+R+R+ 
Sbjct: 527 IGKTAPIAPDAEELGQRTKLHVKRDVSTPLRSTENGIVDQVLLSTNAEGLRFVKVRMRTT 586

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 587 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGLVPDLIINPHAIPSRMTIAHLIECLL 646

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+  QVFLGPT
Sbjct: 647 SKVSSLRGFEGDATPFTE-VTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVTQVFLGPT 705

Query: 324 YYQRLKHMVDDKI 336
           YYQRL+HMVDDKI
Sbjct: 706 YYQRLRHMVDDKI 718


>gi|94410930|gb|ABF18584.1| RNA polymerase II second largest subunit, partial [Hygrocybe
           miniata f. longipes]
          Length = 670

 Score =  350 bits (897), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 180/369 (48%), Positives = 232/369 (62%), Gaps = 82/369 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+++TNF +RMDT+A++LYYP KPL TTR                              
Sbjct: 348 MGIFLTNFLIRMDTMANILYYPQKPLATTR------------------------------ 377

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 378 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 422

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP R+    M++  Y+KL+DDG+IAPG  V G+D++I
Sbjct: 423 SIYYRSYMDLEKKSGIQQLEEFEKPTRENTLRMKHGSYEKLEDDGLIAPGTNVIGEDIII 482

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E+GIVDQV++T N D  KF KIRVR+ R
Sbjct: 483 GKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTESGIVDQVLITTNADDQKFVKIRVRATR 542

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 543 IPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLS 602

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D + V+ +ST L++ GYQ RG EVM++GHTGRK+ AQ++LGPTY
Sbjct: 603 KVATLIGNEGDATPFTD-LTVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQAQIYLGPTY 661

Query: 325 YQRLKHMVD 333
           YQRLKHMVD
Sbjct: 662 YQRLKHMVD 670


>gi|365927722|gb|AEX07765.1| RNA polymerase II subunit 2 [Junghuhnia pseudozilingiana]
          Length = 360

 Score =  350 bits (897), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 183/366 (50%), Positives = 231/366 (63%), Gaps = 82/366 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF VRMDT+A++LYYP KPL TTR                              
Sbjct: 41  MGIYLTNFLVRMDTMANILYYPQKPLATTR------------------------------ 70

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYLRFRELPAG N++VAILCY+GYNQEDSVI+N S+V+RG FR
Sbjct: 71  ---------------SMEYLRFRELPAGQNAVVAILCYSGYNQEDSVIMNQSSVDRGLFR 115

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP R+    M++  YDKL+DDG+IAPG  V+G+D++I
Sbjct: 116 SMYYRSYMDLEKKSGVQQLEEFEKPTRENTLRMKHGTYDKLEDDGLIAPGTNVNGEDIII 175

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   TK  S+RD ST L+++E+GI+DQV+LT N +G KF KIRVRS R
Sbjct: 176 GKTAPIPPDSEELGQRTKTHSRRDVSTPLKSTESGIIDQVLLTTNAEGQKFVKIRVRSTR 235

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 236 IPQIGDKFASRHGQKGTIGIAYRQEDMPFTSEGITPDIVINPHAIPSRMTIGHLVECLLS 295

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G+ GDATPF D + V+ +S  L++ GYQ RG E+M++GHTGRK+ AQV+LGPTY
Sbjct: 296 KVATLLGQEGDATPFTD-LTVEGVSHYLRDKGYQSRGLEIMYHGHTGRKLQAQVYLGPTY 354

Query: 325 YQRLKH 330
           YQRLKH
Sbjct: 355 YQRLKH 360


>gi|103001334|gb|ABF71502.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
           flavum]
          Length = 690

 Score =  350 bits (897), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 189/369 (51%), Positives = 232/369 (62%), Gaps = 84/369 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 369 MGVFLTNYDQRMDTMANILYYPQKPLATTR------------------------------ 398

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 399 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 443

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+RSY D E KRIG    EQFEKP R     +++  YDKLDDDGI+APG+RVSG+D++
Sbjct: 444 SLFYRSYTDQE-KRIGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDII 502

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK   KRD ST LR++E GIVDQV+LT N +G KF K+R+R+ 
Sbjct: 503 IGKTAPISPDAEELGQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLKFVKVRMRTT 562

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 563 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTKEGVVPDLIINPHAIPSRMTIAHLIECQL 622

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 623 SKVSSLRGFEGDATPFTE-VTVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 681

Query: 324 YYQRLKHMV 332
           YYQRL+HMV
Sbjct: 682 YYQRLRHMV 690


>gi|103001731|gb|ABF71519.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
           flavum]
          Length = 700

 Score =  350 bits (897), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 189/369 (51%), Positives = 232/369 (62%), Gaps = 84/369 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 379 MGVFLTNYDQRMDTMANILYYPQKPLATTR------------------------------ 408

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 409 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 453

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+RSY D E KRIG    EQFEKP R     +++  YDKLDDDGI+APG+RVSG+D++
Sbjct: 454 SLFYRSYTDQE-KRIGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDII 512

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK   KRD ST LR++E GIVDQV+LT N +G KF K+R+R+ 
Sbjct: 513 IGKTAPISPDAEELGQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLKFVKVRMRTT 572

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 573 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTKEGVVPDLIINPHAIPSRMTIAHLIECQL 632

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 633 SKVSSLRGFEGDATPFTE-VTVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 691

Query: 324 YYQRLKHMV 332
           YYQRL+HMV
Sbjct: 692 YYQRLRHMV 700


>gi|103002002|gb|ABF71531.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
           cf. chlorophanum Lunke 97]
          Length = 711

 Score =  350 bits (897), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 189/373 (50%), Positives = 234/373 (62%), Gaps = 84/373 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++T +  RMDT+A++LYYP KPL TTR                              
Sbjct: 384 MGVFLTXYDQRMDTMANILYYPQKPLATTR------------------------------ 413

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 414 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 458

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+RSY D E KRIG    EQFEKP R     +++  YDKLDDDGI+APG+RVSG+D++
Sbjct: 459 SLFYRSYTDQE-KRIGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDII 517

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK   KRD ST LR++E GIVDQV+LT N +G +F K+R+R+ 
Sbjct: 518 IGKTAPIAPDAEELGQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTT 577

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQ----------------------------------- 264
           +IPQIGDK ASRHGQKGT GI YRQ                                   
Sbjct: 578 KIPQIGDKXASRHGQKGTIGITYRQXDMPFTKEGIVPDLIINPHAIPSRMTIAHLIECQL 637

Query: 265 -EVSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
            +VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 638 SKVSSLRGFEGDATPFTE-VTVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 696

Query: 324 YYQRLKHMVDDKI 336
           YYQRL+HMVDDKI
Sbjct: 697 YYQRLRHMVDDKI 709


>gi|56694294|gb|AAW22887.1| RNA polymerase II second largest subunit [Lycopodium annotinum]
          Length = 533

 Score =  350 bits (897), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 179/364 (49%), Positives = 231/364 (63%), Gaps = 84/364 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+ +RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 218 MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA----------------------------- 248

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN++VAI CY+GYNQEDSVI+N S+V+RG+FR
Sbjct: 249 ----------------MEHLHFRQLPAGINAVVAIACYSGYNQEDSVIMNQSSVDRGFFR 292

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+F+RSY+D E K+    +E+FE+PNR+   GMR+  YDKLDDDG+  PG RVSG+DV+I
Sbjct: 293 SIFYRSYRDEEKKQGTLVKEEFERPNRENTTGMRHGSYDKLDDDGLAPPGTRVSGEDVII 352

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  LP  +DE     +R++KRD ST LR+SE+G++DQ +LT N DG +F K+RVRS+R
Sbjct: 353 GKTTPLP--QDETGTQAQRYTKRDQSTCLRHSESGMIDQXVLTTNADGLRFVKVRVRSIR 410

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 411 IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTQEGIXPDIIVNPHAIPSRMTIGQLIECIMG 470

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGR++NA +F+GPTY
Sbjct: 471 KVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLNAMIFIGPTY 529

Query: 325 YQRL 328
           YQRL
Sbjct: 530 YQRL 533


>gi|56694320|gb|AAW22900.1| RNA polymerase II second largest subunit [Microcycas calocoma]
          Length = 545

 Score =  350 bits (897), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 184/367 (50%), Positives = 234/367 (63%), Gaps = 86/367 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+ +RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 228 MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA----------------------------- 258

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 259 ----------------MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 302

Query: 121 SVFFRSYKDAESKRIGDQ-EEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+RSY+D E KR+G   +E+F +PNR+   GMR+  YDKLDDDG+  PG RVSG+DV+
Sbjct: 303 SLFYRSYRD-EEKRMGTLVKEEFGRPNRENTTGMRHGSYDKLDDDGLAPPGTRVSGEDVI 361

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT   P  +DE  G   R++KRD ST LR+SE+G+VDQV+LT N DG +F K+R+RSV
Sbjct: 362 IGKTT--PVTQDESGGQAARYTKRDQSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSV 419

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           RIPQIGDKF+SRHGQKGT G+ Y QE                                  
Sbjct: 420 RIPQIGDKFSSRHGQKGTVGMTYCQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIM 479

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGR+++A +FLGPT
Sbjct: 480 GKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPT 538

Query: 324 YYQRLKH 330
           YYQRLKH
Sbjct: 539 YYQRLKH 545


>gi|113957834|gb|ABI49125.1| RNA polymerase II second largest subunit [Megalospora tuberculosa]
          Length = 718

 Score =  350 bits (897), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 185/373 (49%), Positives = 236/373 (63%), Gaps = 84/373 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 393 MGVFLTNYDERMDTMANILYYPQKPLATTR------------------------------ 422

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 423 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 467

Query: 121 SVFFRSYKDAESKRIGDQE-EQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+R+Y + E KR+G Q  E FEKP R     +++  YDKLD+DG++APG+RVSGDDV+
Sbjct: 468 SLFYRAYVNTE-KRVGMQVLESFEKPLRSETLKLKHGTYDKLDNDGLVAPGVRVSGDDVI 526

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +E+   TK   K+D ST LR++E GIVD+V+L+ N +G KF K+R+R+ 
Sbjct: 527 IGKTTPIAPDAEEMGQRTKAHIKKDASTPLRSTENGIVDRVLLSTNSEGLKFVKVRMRTT 586

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 587 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGMVPDIIINPHAIPSRMTIAHLIECQL 646

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + + V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 647 SKVSSLRGYEGDATPFTE-ITVDSVSNLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 705

Query: 324 YYQRLKHMVDDKI 336
           YYQRL+HMVDDKI
Sbjct: 706 YYQRLRHMVDDKI 718


>gi|52699774|gb|AAU86949.1| DNA-dependent RNA polymerase II second largest subunit [Acarospora
           complanata]
          Length = 730

 Score =  350 bits (897), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 189/373 (50%), Positives = 232/373 (62%), Gaps = 84/373 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG    N+  RMDT+A++LYYP KPL TTR                              
Sbjct: 403 MGXXXXNYEQRMDTMANILYYPQKPLATTR------------------------------ 432

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 433 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 477

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+RSY D E KRIG    EQFEKP R     +++  YDKLDDDGI+APG+RVSG+D++
Sbjct: 478 SLFYRSYTDQE-KRIGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDII 536

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK   KRD ST LR++E GIVDQV+LT N +G +F K+R+R+ 
Sbjct: 537 IGKTAPIAPDAEELGQRTKLHIKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTT 596

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 597 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTKEGIVPDLIINPHAIPSRMTIAHLIECQL 656

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + + V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 657 SKVSSLRGFEGDATPFTE-ITVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 715

Query: 324 YYQRLKHMVDDKI 336
           YYQRL+HMVDDKI
Sbjct: 716 YYQRLRHMVDDKI 728


>gi|99866478|gb|ABF67584.1| RNA polymerase II second largest subunit, partial [Auricularia
           auricula-judae]
          Length = 690

 Score =  350 bits (897), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 182/368 (49%), Positives = 229/368 (62%), Gaps = 82/368 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF VR DT+A++LYYP KPL TTR                              
Sbjct: 369 MGIYLTNFQVRQDTMANILYYPQKPLATTR------------------------------ 398

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 399 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 443

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K      E+FEKP+R T   M++  YDKL+DDG+IAPG  V+G+D++I
Sbjct: 444 SIYYRSYMDVEKKSGMVALEEFEKPSRDTTLRMKHGTYDKLEDDGLIAPGTGVAGEDIII 503

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  LP++ +EL   T+   KRD ST L+++E GIVDQV++T N DG KF KIR+RS R
Sbjct: 504 GKTAPLPQDSEELGQRTRTHQKRDVSTPLKSTENGIVDQVLITTNQDGQKFVKIRIRSTR 563

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           +PQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 564 VPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIVINPHAIPSRMTIGHLVECLLS 623

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D + V+ +S +L+  GY  RG EVM++GHTGRK+ AQV+LGPTY
Sbjct: 624 KVATLIGNEGDATPFTD-LTVESVSQVLRSSGYHSRGLEVMYHGHTGRKLQAQVYLGPTY 682

Query: 325 YQRLKHMV 332
           YQRLKHMV
Sbjct: 683 YQRLKHMV 690


>gi|365927718|gb|AEX07763.1| RNA polymerase II subunit 2 [Junghuhnia collabens]
          Length = 321

 Score =  349 bits (896), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 182/366 (49%), Positives = 230/366 (62%), Gaps = 82/366 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF VRMDT+A++LYYP KPL TTR                              
Sbjct: 2   MGIYLTNFLVRMDTMANILYYPQKPLATTR------------------------------ 31

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYLRFRELPAG N+IVAILCY+GYNQEDSVI+N S+V+RG FR
Sbjct: 32  ---------------SMEYLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSVDRGLFR 76

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP R+    M++  YDKL+DDG+IAPG  V+G+D++I
Sbjct: 77  SMYYRSYMDLEKKSGVQQLEEFEKPTRENTLRMKHGTYDKLEDDGLIAPGTNVNGEDIII 136

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   TK  S+RD ST L+++E+GI+DQV++T N +G KF KIRVRS R
Sbjct: 137 GKTAPIPPDSEELGQRTKTHSRRDVSTPLKSTESGIIDQVLITTNAEGQKFVKIRVRSTR 196

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 197 IPQIGDKFASRHGQKGTIGIAYRQEDMPFTAEGITPDIVINPHAIPSRMTIGHLVECLLS 256

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G+ GDATPF D + V+ +S  L++ GY  RG E+M++GHTGRK+ AQV+LGPTY
Sbjct: 257 KVATLLGQEGDATPFTD-LTVESVSHFLRDKGYHSRGLEIMYHGHTGRKLQAQVYLGPTY 315

Query: 325 YQRLKH 330
           YQRLKH
Sbjct: 316 YQRLKH 321


>gi|119644179|gb|ABL85610.1| RNA polymerase II second largest subunit [Buellia stillingiana]
          Length = 717

 Score =  349 bits (896), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 188/373 (50%), Positives = 233/373 (62%), Gaps = 84/373 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+  RM+T+AH+LYYP KPL TTR                              
Sbjct: 392 MGVFLTNYDQRMETMAHILYYPQKPLATTR------------------------------ 421

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 422 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 466

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S FFRSY D E  RIG +  EQFEKP R     +++  Y+KLDDDG+I PG RVSG+D++
Sbjct: 467 SPFFRSYSDQEG-RIGLNVIEQFEKPMRSNTMKLKHGTYEKLDDDGLIIPGARVSGEDII 525

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL    K   +RD ST LR++E+G+VDQV LT N +G+KF K+R+R+ 
Sbjct: 526 IGKTAPITADAEELGQGIKIRERRDASTPLRSTESGLVDQVALTTNAEGHKFVKVRMRTT 585

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 586 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGLVPDIIINPHAIPSRMTIAHLIECQL 645

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 646 SKVSSLRGFEGDATPFTE-VTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 704

Query: 324 YYQRLKHMVDDKI 336
           YYQRL+HMVDDKI
Sbjct: 705 YYQRLRHMVDDKI 717


>gi|52699776|gb|AAU86950.1| DNA-dependent RNA polymerase II second largest subunit [Acarospora
           hilaris]
          Length = 726

 Score =  349 bits (896), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 189/373 (50%), Positives = 233/373 (62%), Gaps = 84/373 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV +T +  RMDT+A++LYYP KPL TTR                              
Sbjct: 399 MGVXLTXYEQRMDTMANILYYPQKPLATTR------------------------------ 428

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 429 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 473

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+RSY D E KRIG    EQFEKP R     +++  YDKLDDDGI+APG+RVSG+D++
Sbjct: 474 SLFYRSYTDQE-KRIGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDII 532

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK   KRD ST LR++E GIVDQV+LT N +G +F K+R+R+ 
Sbjct: 533 IGKTAPIAPDAEELGQRTKLHIKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTT 592

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 593 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTKEGIVPDLIINPHAIPSRMTIAHLIECQL 652

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + + V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 653 SKVSSLRGFEGDATPFTE-ITVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 711

Query: 324 YYQRLKHMVDDKI 336
           YYQRL+HMVD KI
Sbjct: 712 YYQRLRHMVDXKI 724


>gi|103001602|gb|ABF71514.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
           flavum]
          Length = 694

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 189/369 (51%), Positives = 232/369 (62%), Gaps = 84/369 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 373 MGVFLTNYDQRMDTMANILYYPQKPLATTR------------------------------ 402

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 403 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 447

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+RSY D E KRIG    EQFEKP R     +++  YDKLDDDGI+APG+RVSG+D++
Sbjct: 448 SLFYRSYTDQE-KRIGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDII 506

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK   KRD ST LR++E GIVDQV+LT N +G KF K+R+R+ 
Sbjct: 507 IGKTAPISPDAEELGQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLKFVKVRMRTT 566

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 567 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTKEGVVPDLIINPHAIPSRMTIAHLIECQL 626

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 627 SKVSSLRGFEGDATPFTE-VTVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 685

Query: 324 YYQRLKHMV 332
           YYQRL+HMV
Sbjct: 686 YYQRLRHMV 694


>gi|55831375|gb|AAV66546.1| RNA polymerase II second largest subunit [Lactarius deceptivus]
          Length = 557

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 182/366 (49%), Positives = 229/366 (62%), Gaps = 82/366 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF VRMDT+A++LYYP KPL TTR                              
Sbjct: 238 MGIYLTNFLVRMDTMANILYYPQKPLATTR------------------------------ 267

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 268 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 312

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E +      E+FEKP R+T   M++  YDKL+DDG++APG  V+G+D++I
Sbjct: 313 SIYYRSYMDLEKRSGVTPLEEFEKPTRETTLRMKHGTYDKLEDDGLVAPGTGVTGEDIII 372

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  LP   +EL   T+  S+RD ST L+++E GIVDQV++T N DG KF KIRVRS R
Sbjct: 373 GKTAPLPPENEELGQRTRTHSRRDVSTPLKSTENGIVDQVLITTNSDGQKFVKIRVRSPR 432

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 433 IPQIGDKFASRHGQKGTIGITYRQEDMPFTCEGITPDLIINPHAIPSRMTIGHLVECLLS 492

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D + V+ +ST L++ GYQ RG EVM++GHTGRK+ AQ++LGPTY
Sbjct: 493 KVATLIGNEGDATPFTD-LTVESVSTFLRQQGYQSRGLEVMYHGHTGRKLQAQIYLGPTY 551

Query: 325 YQRLKH 330
           YQRLKH
Sbjct: 552 YQRLKH 557


>gi|52699778|gb|AAU86951.1| DNA-dependent RNA polymerase II second largest subunit [Acarospora
           laqueata]
          Length = 711

 Score =  349 bits (895), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 189/372 (50%), Positives = 232/372 (62%), Gaps = 84/372 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV + N+  RMDT+A++LYYP KPL TTR                              
Sbjct: 387 MGVXLXNYDQRMDTMANILYYPQKPLATTR------------------------------ 416

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 417 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 461

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+RSY D E KRIG    EQFEKP R     +++  YDKLDDDGI+APG+RVSG+D++
Sbjct: 462 SLFYRSYTDQE-KRIGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDII 520

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK   KRD ST LR++E GIVDQV+LT N +G +F K+R+R+ 
Sbjct: 521 IGKTAPIAPDAEELGQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTT 580

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 581 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQL 640

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + V V  +S LL+E+GYQ RG E M+NGHTGRK+ AQVFLGPT
Sbjct: 641 SKVSSLRGFEGDATPFTE-VTVDSVSKLLREHGYQSRGFEAMYNGHTGRKLVAQVFLGPT 699

Query: 324 YYQRLKHMVDDK 335
           YYQRL+HMVDDK
Sbjct: 700 YYQRLRHMVDDK 711


>gi|384492096|gb|AFH96453.1| RNA polymerase II subunit 2, partial [Morchella frustrata]
          Length = 322

 Score =  349 bits (895), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 189/369 (51%), Positives = 234/369 (63%), Gaps = 84/369 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TNF  RMDT+A++LYYP KPL TTR                              
Sbjct: 1   MGVFLTNFAERMDTMANILYYPQKPLATTR------------------------------ 30

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 31  ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 75

Query: 121 SVFFRSYKDAESKRIGDQ-EEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+RSY D E KRIG Q  E+FEKP R     +++  YDKLD+DG++APG+RVSG+D++
Sbjct: 76  SLFYRSYMDQE-KRIGMQVVEEFEKPTRANTLKLKHGTYDKLDEDGLVAPGVRVSGEDII 134

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + DE+    K  +KRD ST LR++E GIVDQVMLT N +G KF K+R+R+ 
Sbjct: 135 IGKTAPIAPDVDEMGQRQKFHTKRDVSTPLRSTENGIVDQVMLTTNAEGLKFVKVRMRTT 194

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 195 KIPQIGDKFASRHGQKGTVGITYRQEDMPFTCEGIVPDLIINPHAIPSRMTIAHLIECQL 254

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF D V V+ +STLL++ GYQ RG EVM+NG+TGRK+  QVFLGPT
Sbjct: 255 SKVSSLRGFEGDATPFTD-VTVESVSTLLRQNGYQSRGFEVMYNGYTGRKLVCQVFLGPT 313

Query: 324 YYQRLKHMV 332
           YYQRL+HMV
Sbjct: 314 YYQRLRHMV 322


>gi|384492100|gb|AFH96455.1| RNA polymerase II subunit 2, partial [Morchella prava]
          Length = 322

 Score =  349 bits (895), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 188/369 (50%), Positives = 234/369 (63%), Gaps = 84/369 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TNF  RMDT+A++LYYP KPL TTR                              
Sbjct: 1   MGVFLTNFSERMDTMANILYYPQKPLATTR------------------------------ 30

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 31  ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 75

Query: 121 SVFFRSYKDAESKRIGDQ-EEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+RSY D E KRIG Q  E+FEKP R     +++  YDKLD+DG++APG+RVSG+D++
Sbjct: 76  SLFYRSYMDQE-KRIGMQVVEEFEKPTRANTLKLKHGTYDKLDEDGLVAPGVRVSGEDII 134

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + DE+    K  +KRD ST LR++E GIVDQVMLT N +G KF K+R+R+ 
Sbjct: 135 IGKTAPITPDVDEMGQRQKYHTKRDVSTPLRSTENGIVDQVMLTTNAEGLKFVKVRMRTT 194

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           ++PQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 195 KVPQIGDKFASRHGQKGTVGITYRQEDMPFTCEGIVPDLIINPHAIPSRMTIAHLIECQL 254

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF D V V+ +STLL++ GYQ RG EVM+NG+TGRK+  QVFLGPT
Sbjct: 255 SKVSSLRGFEGDATPFTD-VTVESVSTLLRQNGYQSRGFEVMYNGYTGRKLVCQVFLGPT 313

Query: 324 YYQRLKHMV 332
           YYQRL+HMV
Sbjct: 314 YYQRLRHMV 322


>gi|103001574|gb|ABF71513.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
           gobiense]
          Length = 709

 Score =  348 bits (894), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 188/369 (50%), Positives = 232/369 (62%), Gaps = 84/369 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 388 MGVFLTNYDQRMDTMANILYYPQKPLATTR------------------------------ 417

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 418 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 462

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+RSY D E KRIG    EQFEKP R     +++  YDKLDDDGI+APG+RVSG+D++
Sbjct: 463 SLFYRSYTDQE-KRIGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDII 521

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK   KRD ST LR++E GIVDQV+LT N +G +F K+R+R+ 
Sbjct: 522 IGKTAPIAPDAEELGQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTT 581

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 582 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTKEGIVPDLIINPHAIPSRMTIAHLIECQL 641

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 642 SKVSSLRGFEGDATPFTE-VTVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 700

Query: 324 YYQRLKHMV 332
           YYQRL+HMV
Sbjct: 701 YYQRLRHMV 709


>gi|94410910|gb|ABF18576.1| RNA polymerase II second largest subunit, partial [Gymnopus
           contrarius]
          Length = 693

 Score =  348 bits (894), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 181/368 (49%), Positives = 229/368 (62%), Gaps = 82/368 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF +RMDT+A++LYYP KPL TTR                              
Sbjct: 372 MGIYLTNFLIRMDTMANILYYPQKPLATTR------------------------------ 401

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 402 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 446

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP R     M++  YDKL+DDG+IAPG  V G+D++I
Sbjct: 447 SIYYRSYMDLEKKSGIQQLEEFEKPTRDNTLRMKHGTYDKLEDDGLIAPGTGVRGEDIII 506

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E+GIVDQV++T N +G KF K+RVRS R
Sbjct: 507 GKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRSTR 566

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQ GDKFASRHGQKGT GI YRQE                                   
Sbjct: 567 IPQTGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLS 626

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D + V+ +S  L++ GYQ RG EVMF+GHTGRK+ AQV+LGPTY
Sbjct: 627 KVATLIGNEGDATPFTD-LTVESVSMFLRQKGYQSRGLEVMFHGHTGRKLQAQVYLGPTY 685

Query: 325 YQRLKHMV 332
           YQRLKHMV
Sbjct: 686 YQRLKHMV 693


>gi|52699792|gb|AAU86958.1| DNA-dependent RNA polymerase II second largest subunit [Calicium
           viride]
          Length = 714

 Score =  348 bits (894), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 188/373 (50%), Positives = 232/373 (62%), Gaps = 84/373 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG        RM+T+AH+LYYP KPL TTR                              
Sbjct: 387 MGXXXXXXDQRMETMAHILYYPQKPLATTR------------------------------ 416

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 417 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 461

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+RSY D E KRIG +  EQFEKP R     +++  Y+KLD+DGII PG RVSG+D++
Sbjct: 462 SLFYRSYTDQE-KRIGMNTLEQFEKPMRSDTLRLKHGTYEKLDEDGIIIPGARVSGEDII 520

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +P + +EL   TK  SKRD ST LR++E+G+VDQV+LT N +G +F K+R+R+ 
Sbjct: 521 IGKTAPIPADAEELGQRTKYHSKRDASTPLRSTESGLVDQVLLTTNAEGLRFVKVRMRTT 580

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 581 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQL 640

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 641 SKVSSLRGFEGDATPFTE-VTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 699

Query: 324 YYQRLKHMVDDKI 336
           YYQRL+HMVDDKI
Sbjct: 700 YYQRLRHMVDDKI 712


>gi|110704333|gb|ABG88065.1| RNA polymerase II second largest subunit [Microstroma juglandis]
          Length = 716

 Score =  348 bits (894), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 179/369 (48%), Positives = 233/369 (63%), Gaps = 82/369 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGVY+TN+ +RMDT+A++LYYP KPL TTR                              
Sbjct: 394 MGVYLTNYQMRMDTMANILYYPQKPLATTR------------------------------ 423

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L FRELPAG N+IVAILCY+GYNQEDSVILN S+++RG FR
Sbjct: 424 ---------------SMEHLNFRELPAGQNAIVAILCYSGYNQEDSVILNQSSIDRGLFR 468

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++R+Y D E K     +E+FEKP R T   +++  YDK+D DG++APG RVSG+D++I
Sbjct: 469 SLYYRTYTDFEKKVGFTLQEEFEKPVRDTAIRLKHGTYDKIDADGLVAPGTRVSGEDIII 528

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  LP + +EL   +K  +KRD ST L+++E+GIVDQV+++ N +G KF K+RVRS R
Sbjct: 529 GKTAPLPPDSEELGLRSKTHTKRDVSTPLKSTESGIVDQVLVSTNQEGSKFVKVRVRSTR 588

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           +PQ GDKFASRHGQKGT GI YRQE                                   
Sbjct: 589 VPQTGDKFASRHGQKGTIGITYRQEDMPFTIEGVTPDIIINPHAIPSRMTIGHLVECLLS 648

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G+ GDATPF D + V+ +S++L + GYQ RG E+M+NGHTGRK+ AQV+LGPTY
Sbjct: 649 KVATLSGQEGDATPFTD-LTVEAVSSILAKLGYQKRGLEIMYNGHTGRKLQAQVYLGPTY 707

Query: 325 YQRLKHMVD 333
           YQRLKHMVD
Sbjct: 708 YQRLKHMVD 716


>gi|52699786|gb|AAU86955.1| DNA-dependent RNA polymerase II second largest subunit [Baeomyces
           placophyllus]
          Length = 717

 Score =  348 bits (893), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 188/373 (50%), Positives = 232/373 (62%), Gaps = 84/373 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV +TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 390 MGVXLTNYDERMDTMANILYYPQKPLATTR------------------------------ 419

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 420 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 464

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+FFR+Y D E KRIG    EQFEKP R     +++  YDKLDDDGI+APG+RVSG+D++
Sbjct: 465 SLFFRTYTDQE-KRIGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDII 523

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +E+   TK   KRD ST LR +E GIVD+V+LT N +G +F K+R+R+ 
Sbjct: 524 IGKTAPIAPDAEEMGQRTKLHIKRDVSTPLRTTENGIVDKVLLTTNAEGLRFVKVRMRTT 583

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YR E                                  
Sbjct: 584 KIPQIGDKFASRHGQKGTIGITYRMEDMPFTAEGIVPDLIINPHAIPSRMTIAHLIECQL 643

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + V V  IS LL+E+GYQ RG E+M+NGHTGRK+ AQVFLGPT
Sbjct: 644 SKVSSLRGFEGDATPFTE-VTVDSISNLLREHGYQSRGFEIMYNGHTGRKLVAQVFLGPT 702

Query: 324 YYQRLKHMVDDKI 336
           YYQRL+HMVD KI
Sbjct: 703 YYQRLRHMVDXKI 715


>gi|46277291|gb|AAS86836.1| RNA polymerase II second largest subunit, partial [Teucrium
           fruticans]
          Length = 336

 Score =  348 bits (893), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 182/364 (50%), Positives = 227/364 (62%), Gaps = 84/364 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+  RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 21  MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA----------------------------- 51

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 52  ----------------MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 95

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY+D E K     +E F +P+R +C GMR+  YDKLDDDG+  PG RVSG+DV+I
Sbjct: 96  SLFFRSYRDEEKKMGTLVKEDFGRPDRASCMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 155

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GK  T P   D+ +G   R++KRD ST LR+SETG+VDQV+LT N DG +F K+RVRSVR
Sbjct: 156 GK--TSPIAPDDAQGQAARYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVR 213

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 214 IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTLEGITPDIIVNPHAIPSRMTIGQLIECVMG 273

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGR++ A +FLGPTY
Sbjct: 274 KVAAHMGKEGDATPFTD-VTVDNISRALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTY 332

Query: 325 YQRL 328
           YQRL
Sbjct: 333 YQRL 336


>gi|119644079|gb|ABL85605.1| RNA polymerase II second largest subunit [Parmotrema austrosinense]
          Length = 710

 Score =  348 bits (893), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 186/373 (49%), Positives = 234/373 (62%), Gaps = 84/373 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 385 MGVFLTNYEQRMDTMANILYYPQKPLATTR------------------------------ 414

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 415 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 459

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+R+Y D E KRIG    EQFEKP R     +++  YDKLDDDG++APG+RVSG+D++
Sbjct: 460 SLFYRAYTDQE-KRIGMSVVEQFEKPMRSDTLRLKHGTYDKLDDDGLVAPGVRVSGEDII 518

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK   KRD ST LR++E GIVDQV+L+ N +G +F K+R+R+ 
Sbjct: 519 IGKTAPIAPDAEELGQRTKLHVKRDTSTPLRSTENGIVDQVLLSTNAEGLRFVKVRMRTT 578

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDK ASRHGQKGT GI YRQE                                  
Sbjct: 579 KIPQIGDKLASRHGQKGTIGITYRQEDMPFTSEGMVPDLIINPHAIPSRKTIAHLIECLL 638

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTG+K+  QVFLGPT
Sbjct: 639 SKVSSLRGFEGDATPFTE-VTVDSVSRLLREHGYQSRGFEVMYNGHTGKKLVTQVFLGPT 697

Query: 324 YYQRLKHMVDDKI 336
           YYQRL+HMVDDKI
Sbjct: 698 YYQRLRHMVDDKI 710


>gi|46411498|gb|AAS94319.1| RNA polymerase II [Parmotrema tinctorum]
          Length = 712

 Score =  348 bits (893), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 186/373 (49%), Positives = 234/373 (62%), Gaps = 84/373 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 387 MGVFLTNYEQRMDTMANILYYPQKPLATTR------------------------------ 416

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 417 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 461

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+R+Y D E KRIG    EQFEKP R     +++  YDKLDDDG++APG+RVSG+D++
Sbjct: 462 SLFYRAYTDQE-KRIGMSVVEQFEKPMRSDTLRLKHGTYDKLDDDGLVAPGVRVSGEDII 520

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK   KRD ST LR++E GIVDQV+L+ N +G +F K+R+R+ 
Sbjct: 521 IGKTAPIAPDAEELGQRTKLHVKRDTSTPLRSTENGIVDQVLLSTNAEGLRFVKVRMRTT 580

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDK ASRHGQKGT GI YRQE                                  
Sbjct: 581 KIPQIGDKLASRHGQKGTIGITYRQEDMPFTSEGMVPDLIINPHAIPSRKTIAHLIECLL 640

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTG+K+  QVFLGPT
Sbjct: 641 SKVSSLRGFEGDATPFTE-VTVDSVSRLLREHGYQSRGFEVMYNGHTGKKLVTQVFLGPT 699

Query: 324 YYQRLKHMVDDKI 336
           YYQRL+HMVDDKI
Sbjct: 700 YYQRLRHMVDDKI 712


>gi|55140711|gb|AAQ01544.3| RNA polymerase II second largest subunit [Phaeomarasmius proximans]
          Length = 687

 Score =  348 bits (893), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 180/366 (49%), Positives = 230/366 (62%), Gaps = 82/366 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF +RMDT+A++LYYP KPL TTR                              
Sbjct: 368 MGIYLTNFLIRMDTMANILYYPQKPLATTR------------------------------ 397

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 398 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 442

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP R+    +++  YDKL+DDG+IAPG  V G+D++I
Sbjct: 443 SIYYRSYMDLEKKSGVQQLEEFEKPTRENTLRLKHGTYDKLEDDGLIAPGTGVRGEDIII 502

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E+GIVDQV+LT N +G KF K+RVRS R
Sbjct: 503 GKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTESGIVDQVLLTTNSEGQKFVKVRVRSTR 562

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 563 IPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGIVPDLIINPHAIPSRMTIGHLVECLLS 622

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D + V+ +ST L++ GYQ RG EVM++GHTGRK+ AQV+LGPTY
Sbjct: 623 KVATLIGNEGDATPFTD-LTVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTY 681

Query: 325 YQRLKH 330
           YQRLKH
Sbjct: 682 YQRLKH 687


>gi|94410924|gb|ABF18581.1| RNA polymerase II second largest subunit, partial [Porotheleum
           fimbriatum]
          Length = 689

 Score =  348 bits (893), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 180/368 (48%), Positives = 231/368 (62%), Gaps = 82/368 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+++TNF +RMDT+A++LYYP KPL TTR                              
Sbjct: 368 MGIFLTNFLIRMDTMANILYYPQKPLATTR------------------------------ 397

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 398 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 442

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP RQ    M++  YDKLDDDG+I+PG  V G+D++I
Sbjct: 443 SIYYRSYMDLEKKSGIAQLEEFEKPLRQNTLRMKHGTYDKLDDDGLISPGTGVVGEDIII 502

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E GIVDQV++T N +G KF K+RVRS+R
Sbjct: 503 GKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSIR 562

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           +PQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 563 VPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDLIINPHAIPSRMTIGHLVECLLS 622

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D + V+ +S  L++ GYQ RG EVM++GHTGRK+ AQV+LGPTY
Sbjct: 623 KVATLIGNEGDATPFTD-LTVESVSAYLRQKGYQQRGLEVMYHGHTGRKLQAQVYLGPTY 681

Query: 325 YQRLKHMV 332
           YQRLKHMV
Sbjct: 682 YQRLKHMV 689


>gi|94410920|gb|ABF18579.1| RNA polymerase II second largest subunit, partial [Hemimycena
           gracilis]
          Length = 689

 Score =  348 bits (893), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 179/368 (48%), Positives = 233/368 (63%), Gaps = 82/368 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+++TNF +RMDT+A++L YP KPL TTR                              
Sbjct: 368 MGIFLTNFLIRMDTMANILCYPQKPLATTR------------------------------ 397

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 398 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 442

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K   +Q E+F+KP R T   M++  YDKL+DDG+IAPG  V G+D++I
Sbjct: 443 SIYYRSYMDLEKKSGINQLEEFDKPTRDTTLRMKHGTYDKLEDDGLIAPGTGVVGEDIII 502

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E+G+VDQV++T N DG KF K+RVRS+R
Sbjct: 503 GKTAPIPPDSEELGQRTRMHTRRDVSTPLKSTESGVVDQVLITTNSDGQKFVKVRVRSIR 562

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           +PQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 563 VPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLS 622

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D + V+ +ST L++ GYQ RG EVM++GHTGRK+ AQV+LGPTY
Sbjct: 623 KVATLIGNEGDATPFTD-LTVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTY 681

Query: 325 YQRLKHMV 332
           YQRLKHMV
Sbjct: 682 YQRLKHMV 689


>gi|93278291|gb|ABF06601.1| RNA polymerase II second largest subunit, partial [Cheimonophyllum
           candidissimum]
          Length = 690

 Score =  348 bits (893), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 180/368 (48%), Positives = 231/368 (62%), Gaps = 82/368 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF +RMDT+A++LYYP KPL TTR                              
Sbjct: 369 MGIYLTNFLIRMDTMANILYYPQKPLATTR------------------------------ 398

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 399 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 443

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++R Y D E K    Q E+FEKP+RQ    M++  YDKL+DDG+IAPG  V+G+D++I
Sbjct: 444 SIYYRGYMDLEKKSGIQQLEEFEKPSRQQTLRMKHGTYDKLEDDGLIAPGTGVNGEDIII 503

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T   ++RD ST L+++E+G+VDQV++T N DG KF K+R+RS R
Sbjct: 504 GKTAPIPPDSEELGQRTPTHTRRDVSTPLKSTESGMVDQVLITTNHDGQKFVKVRIRSTR 563

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 564 IPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLS 623

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D + V+ +S  L++ GYQ RG EVM++GHTGRK+ AQV+LGPTY
Sbjct: 624 KVATLIGNEGDATPFTD-LTVESVSMYLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTY 682

Query: 325 YQRLKHMV 332
           YQRLKHMV
Sbjct: 683 YQRLKHMV 690


>gi|55140709|gb|AAQ01541.2| RNA polymerase II second largest subunit [Crepidotus cf. applanatus
           PBM 717]
          Length = 688

 Score =  348 bits (893), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 179/366 (48%), Positives = 231/366 (63%), Gaps = 82/366 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF +RMDT+A++LYYP KPL TTR                              
Sbjct: 369 MGIYLTNFLIRMDTMANILYYPQKPLATTR------------------------------ 398

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 399 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 443

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP R+T   M++  YDKL+DDG+IAPG  V G+D++I
Sbjct: 444 SIYYRSYMDLEKKSGIQQLEEFEKPTRETTLRMKHGTYDKLEDDGLIAPGTGVRGEDIII 503

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E+GIVDQV++T N +G KF K+RVRS R
Sbjct: 504 GKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRSTR 563

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 564 IPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDLVINPHAIPSRMTIGHLVECLLS 623

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D + V+ +ST L++ GYQ RG E+M++GHTG+K+ AQV+LGPTY
Sbjct: 624 KVATLIGNEGDATPFTD-LTVESVSTFLRQKGYQSRGLEIMYHGHTGKKLQAQVYLGPTY 682

Query: 325 YQRLKH 330
           YQRLKH
Sbjct: 683 YQRLKH 688


>gi|52699847|gb|AAU86985.1| DNA-dependent RNA polymerase II second largest subunit [Pertusaria
           amara]
          Length = 716

 Score =  348 bits (893), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 187/375 (49%), Positives = 234/375 (62%), Gaps = 84/375 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TNF  RMDT+A++LYYP KPL TTR                              
Sbjct: 389 MGVFLTNFDERMDTMANILYYPQKPLATTR------------------------------ 418

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 419 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 463

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+R+Y D E KR+G    EQFEKP R     +++  YDKLD+DGIIAPG+RVSG+D++
Sbjct: 464 SLFYRAYTDQE-KRVGMSVVEQFEKPMRSDTLKLKHGTYDKLDEDGIIAPGVRVSGEDII 522

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK   KRD ST LR++E GIVD+V+LT N +G +F K+R R+ 
Sbjct: 523 IGKTAPIAPDAEELGQRTKLHVKRDVSTPLRSTENGIVDKVLLTTNAEGLRFVKVRTRTT 582

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           ++PQIGDKFASRHGQKGT GI YR E                                  
Sbjct: 583 KVPQIGDKFASRHGQKGTIGITYRMEDMPFTSEGIVPDLIINPHAIPSRMTIAHLIECQL 642

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 643 SKVSSLRGFEGDATPFTE-VTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 701

Query: 324 YYQRLKHMVDDKIHS 338
           YYQRL+HMVD KI +
Sbjct: 702 YYQRLRHMVDXKIXA 716


>gi|46411490|gb|AAS94316.1| RNA polymerase II [Acarosporina microspora]
          Length = 717

 Score =  348 bits (893), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 185/373 (49%), Positives = 234/373 (62%), Gaps = 84/373 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TNF  R+DT++++LYYP KPL TTR                              
Sbjct: 392 MGVFLTNFDERIDTMSNILYYPQKPLATTR------------------------------ 421

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 422 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 466

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+R+Y + E KRIG    E FEKP R     +++  YDKLDDDGI+APG+RVSG+D++
Sbjct: 467 SLFYRAYVEQE-KRIGMSLVETFEKPMRSDTLRLKHGTYDKLDDDGIVAPGVRVSGEDII 525

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +P + +E+   TK  +KRD ST LR++E GIVD+V+LT N +G KF K+R R+ 
Sbjct: 526 IGKTAPIPPDSEEMGQRTKLHTKRDASTPLRSTENGIVDKVLLTTNAEGLKFVKVRTRTT 585

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT G+ YR E                                  
Sbjct: 586 KIPQIGDKFASRHGQKGTIGVTYRMEDMPFSSEGITPDIIINPHAIPSRMTIAHLIECQL 645

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+ +QVF GPT
Sbjct: 646 SKVSSLRGFEGDATPFTE-VTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVSQVFFGPT 704

Query: 324 YYQRLKHMVDDKI 336
           YYQRLKHMVDDKI
Sbjct: 705 YYQRLKHMVDDKI 717


>gi|52699896|gb|AAU87009.1| DNA-dependent RNA polymerase II second largest subunit [Thelocarpon
           laureri]
          Length = 715

 Score =  348 bits (892), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 190/372 (51%), Positives = 231/372 (62%), Gaps = 84/372 (22%)

Query: 2   GVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDS 61
           G     F  RMDT+A++LYYP KPL TTR                               
Sbjct: 389 GXXXXXFDQRMDTMANILYYPQKPLATTR------------------------------- 417

Query: 62  VILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRS 121
                         SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FRS
Sbjct: 418 --------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRS 463

Query: 122 VFFRSYKDAESKRIGDQE-EQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           +F+R+Y D E KRIG    EQFEKP R     +++  YDKLDDDGIIAPG+RVSG+DV+I
Sbjct: 464 LFYRAYTDQE-KRIGMSTIEQFEKPMRGDTLKLKHGTYDKLDDDGIIAPGVRVSGEDVII 522

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +  + +EL   TK   KRD ST LR++E+GIVDQV+LT N +G +F K+R+R+ +
Sbjct: 523 GKTAPIAPDAEELGQRTKMHIKRDVSTPLRSTESGIVDQVLLTTNAEGLRFVKVRMRTTK 582

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           +PQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 583 VPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGTIPDLIINPHAIPSRMTIAHLIECQLS 642

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V+S KG  GDATPF D V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPTY
Sbjct: 643 KVASLKGYEGDATPFTD-VTVDSVSGLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTY 701

Query: 325 YQRLKHMVDDKI 336
           YQRL+HMVDDKI
Sbjct: 702 YQRLRHMVDDKI 713


>gi|103001284|gb|ABF71500.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
           cf. chlorophanum Feuerer 18.2.2003]
          Length = 699

 Score =  348 bits (892), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 188/369 (50%), Positives = 232/369 (62%), Gaps = 84/369 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 378 MGVFLTNYDQRMDTMANILYYPQKPLATTR------------------------------ 407

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 408 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 452

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+RSY D E KRIG    EQFEKP R     +++  YDKLD+DGI+APG+RVSG+D++
Sbjct: 453 SLFYRSYTDQE-KRIGMSVVEQFEKPMRSDTLKLKHGTYDKLDEDGIVAPGVRVSGEDII 511

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK   KRD ST LR++E GIVDQV+LT N +G KF K+R+R+ 
Sbjct: 512 IGKTAPIAPDAEELGQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLKFVKVRMRTT 571

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 572 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTMEGVVPDLIINPHAIPSRMTIAHLIECQL 631

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 632 SKVSSLRGFEGDATPFTE-VTVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 690

Query: 324 YYQRLKHMV 332
           YYQRL+HMV
Sbjct: 691 YYQRLRHMV 699


>gi|113957802|gb|ABI49123.1| RNA polymerase II second largest subunit [Teloschistes exilis]
          Length = 709

 Score =  348 bits (892), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 183/373 (49%), Positives = 235/373 (63%), Gaps = 84/373 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 384 MGVFLTNYDERMDTMANILYYPQKPLATTR------------------------------ 413

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 414 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 458

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+R+Y D E KR+G    E+FE+P R     +++  YDKLDDDG++APG+RVSGDDV+
Sbjct: 459 SLFYRAYVDTE-KRVGMTVLEKFERPLRSETLKLKHGTYDKLDDDGLVAPGVRVSGDDVI 517

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +E+   TK   K+D ST LR++E GIVD+V+L+ N +G KF K+R+R+ 
Sbjct: 518 IGKTTPIAPDAEEMGQRTKNHIKKDTSTPLRSTENGIVDKVLLSTNSEGLKFVKVRMRTT 577

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           ++PQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 578 KVPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQL 637

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + + V  +S LL+E+GYQ RG EVM+NGHTGRK+  QVFLGPT
Sbjct: 638 SKVSSLRGYEGDATPFTE-ITVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVVQVFLGPT 696

Query: 324 YYQRLKHMVDDKI 336
           YYQRL+HMVDDKI
Sbjct: 697 YYQRLRHMVDDKI 709


>gi|103001775|gb|ABF71521.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
           chlorophanum]
          Length = 697

 Score =  347 bits (891), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 188/369 (50%), Positives = 231/369 (62%), Gaps = 84/369 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 376 MGVFLTNYDQRMDTMANILYYPQKPLATTR------------------------------ 405

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 406 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 450

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+RSY D E KRIG    EQFEKP R     +++  YDKLDDDGI+APG+RVSG+D++
Sbjct: 451 SLFYRSYTDQE-KRIGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDII 509

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK   KRD ST LR++E GIVDQV+LT N +G KF K+R+R+ 
Sbjct: 510 IGKTAPIAPDAEELGQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLKFVKVRMRTT 569

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 570 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTMEGVVPDLIINPHAIPSRMTIAHLIECQL 629

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVF GPT
Sbjct: 630 SKVSSLRGFEGDATPFTE-VTVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFXGPT 688

Query: 324 YYQRLKHMV 332
           YYQRL+HMV
Sbjct: 689 YYQRLRHMV 697


>gi|258562142|gb|ACV81793.1| RNA polymerase II second largest subunit [Calocera viscosa]
          Length = 660

 Score =  347 bits (891), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 178/371 (47%), Positives = 233/371 (62%), Gaps = 82/371 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF VRMDT+A++LYYP KPL TTR                              
Sbjct: 336 MGIYLTNFQVRMDTMANILYYPQKPLATTR------------------------------ 365

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 366 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 410

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E        E+FEKP+R T   M++  YDKL+ DG++APG+ ++G+D++I
Sbjct: 411 SIYYRSYTDMEKTTGIVPVEEFEKPHRDTTVRMKHGTYDKLEADGLVAPGIGINGEDIII 470

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  LP + +EL   T+  ++RD ST L+++E GIVDQV+++ N  G KF K+R+RS R
Sbjct: 471 GKTAPLPPDSEELGQRTRTHTRRDVSTPLKSTENGIVDQVLISTNESGVKFVKVRIRSTR 530

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           +PQIGDKFASRHGQKGT G+ YRQE                                   
Sbjct: 531 VPQIGDKFASRHGQKGTIGMTYRQEDMPFAANGITPDIIINPHAIPSRMTIGHLVECLLS 590

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            +++  G  GDATPF D + V+ +S+LL+  GYQ RG EVM++GHTGRK+ AQV+LGPTY
Sbjct: 591 KLATLIGNEGDATPFTD-LTVESVSSLLRGKGYQQRGLEVMYHGHTGRKLQAQVYLGPTY 649

Query: 325 YQRLKHMVDDK 335
           YQRLKHMVDDK
Sbjct: 650 YQRLKHMVDDK 660


>gi|45545329|gb|AAS67512.1| DNA-dependent RNA polymerase II second largest subunit, partial
           [Diploschistes muscorum]
          Length = 901

 Score =  347 bits (891), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 187/367 (50%), Positives = 231/367 (62%), Gaps = 84/367 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TNF  RMDT+A++LYYP KPL TTR                              
Sbjct: 582 MGVFLTNFDERMDTMANILYYPQKPLATTR------------------------------ 611

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 612 ---------------SMEFLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 656

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+R+Y + E KR+G    EQFEKP R     +++  Y+KLDDDG+IAPG+RVSG+DV+
Sbjct: 657 SLFYRAYVEQE-KRVGMSLVEQFEKPLRSETLRLKHGTYEKLDDDGLIAPGVRVSGEDVI 715

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + DEL   TK  SKRD ST LR++E GIVD+V+LT N +G KF K+R+R+ 
Sbjct: 716 IGKTAPIAPDTDELGQRTKLHSKRDASTPLRSTENGIVDKVLLTTNQEGLKFVKVRMRTT 775

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 776 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDLIINPHAIPSRMTIAHLIECQL 835

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF D V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVF GPT
Sbjct: 836 SKVSSLRGFEGDATPFTD-VTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLRAQVFFGPT 894

Query: 324 YYQRLKH 330
           YYQRL+H
Sbjct: 895 YYQRLRH 901


>gi|40643911|emb|CAD89878.1| RNA polymerase II, second largest subunit [Doronicum orientale]
          Length = 326

 Score =  347 bits (890), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 181/366 (49%), Positives = 227/366 (62%), Gaps = 83/366 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF  RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 8   MGIYVTNFQFRMDTLAYVLYYPQKPLVTTRA----------------------------- 38

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 39  ----------------MEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFR 82

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY+D E K     +E F +P+R    GMR+  YDKLDDDG+  PG RV G+DV+I
Sbjct: 83  SLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVGGEDVII 142

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  + + +D  +G   R+++RD ST LR+SETG+VDQV+LT N DG +F K+RVRSVR
Sbjct: 143 GKTTPIAQ-DDAAQGQASRYTRRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVR 201

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 202 IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMG 261

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGR++ A +FLGPTY
Sbjct: 262 KVAAHMGKEGDATPFTD-VTVDNISRALHKCGYQMRGFETMYNGHTGRRLPAMIFLGPTY 320

Query: 325 YQRLKH 330
           YQRLKH
Sbjct: 321 YQRLKH 326


>gi|40643897|emb|CAD89687.1| RNA polymerase II, second largest subunit [Ilex x meserveae]
          Length = 322

 Score =  347 bits (890), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 181/365 (49%), Positives = 227/365 (62%), Gaps = 84/365 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+  RMDTLA+VL+YP KPLVTTR+                             
Sbjct: 6   MGIYVTNYQFRMDTLAYVLFYPQKPLVTTRA----------------------------- 36

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 37  ----------------MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 80

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY+D E K     +E F +P+R    GMR+  YDKLDDDG+  PG RVSG+DV+I
Sbjct: 81  SIFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 140

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT   P  +D+ +G   R++KRD ST LR+SETGIVDQV+LT N DG +F K+RVRSVR
Sbjct: 141 GKTT--PIAQDDAQGQASRYTKRDHSTSLRHSETGIVDQVLLTTNADGLRFVKVRVRSVR 198

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 199 IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGVTPDIIVNPHAIPSRMTIGQLIECIMG 258

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGR++ + +FLGPTY
Sbjct: 259 KVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTSMIFLGPTY 317

Query: 325 YQRLK 329
           YQRLK
Sbjct: 318 YQRLK 322


>gi|94410934|gb|ABF18585.1| RNA polymerase II second largest subunit, partial [Hygrophorus
           pudorinus]
          Length = 691

 Score =  347 bits (890), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 181/368 (49%), Positives = 229/368 (62%), Gaps = 82/368 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF +RMDT+A++LYYP KPL TTR                              
Sbjct: 370 MGIYLTNFLIRMDTMANILYYPQKPLATTR------------------------------ 399

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 400 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 444

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP R     M++  YDKL+DDG+IAPG  V G+D++I
Sbjct: 445 SIYYRSYMDLEKKSGIQQLEEFEKPTRDNTLRMKHGTYDKLEDDGLIAPGTGVIGEDIII 504

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E GIVDQV++T N +G KF K+RVRS R
Sbjct: 505 GKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTR 564

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           +PQIGDKFASRHGQKGT GI Y QE                                   
Sbjct: 565 VPQIGDKFASRHGQKGTIGITYGQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLS 624

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D + V+ +ST L++ GYQ RG EVMF+GHTGRK+ AQV+LGPTY
Sbjct: 625 KVATLIGNEGDATPFTD-LTVESVSTFLRQKGYQSRGLEVMFHGHTGRKLQAQVYLGPTY 683

Query: 325 YQRLKHMV 332
           YQRLKHMV
Sbjct: 684 YQRLKHMV 691


>gi|384492092|gb|AFH96451.1| RNA polymerase II subunit 2, partial [Morchella sextelata]
 gi|384492094|gb|AFH96452.1| RNA polymerase II subunit 2, partial [Morchella septentrionalis]
 gi|384492098|gb|AFH96454.1| RNA polymerase II subunit 2, partial [Morchella angusticeps]
          Length = 321

 Score =  347 bits (890), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 188/368 (51%), Positives = 233/368 (63%), Gaps = 84/368 (22%)

Query: 2   GVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDS 61
           GV++TNF  RMDT+A++LYYP KPL TTR                               
Sbjct: 1   GVFLTNFAERMDTMANILYYPQKPLATTR------------------------------- 29

Query: 62  VILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRS 121
                         SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FRS
Sbjct: 30  --------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRS 75

Query: 122 VFFRSYKDAESKRIGDQ-EEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           +F+RSY D E KRIG Q  E+FEKP R     +++  YDKLD+DG++APG+RVSG+D++I
Sbjct: 76  LFYRSYMDQE-KRIGMQVVEEFEKPTRANTLKLKHGTYDKLDEDGLVAPGVRVSGEDIII 134

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +  + DE+    K  +KRD ST LR++E GIVDQVMLT N +G KF K+R+R+ +
Sbjct: 135 GKTAPIAPDVDEMGQRQKFHTKRDVSTPLRSTENGIVDQVMLTTNAEGLKFVKVRMRTTK 194

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 195 IPQIGDKFASRHGQKGTVGITYRQEDMPFTCEGIVPDLIINPHAIPSRMTIAHLIECQLS 254

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            VSS +G  GDATPF D V V+ +STLL++ GYQ RG EVM+NG+TGRK+  QVFLGPTY
Sbjct: 255 KVSSLRGFEGDATPFTD-VTVESVSTLLRQNGYQSRGFEVMYNGYTGRKLVCQVFLGPTY 313

Query: 325 YQRLKHMV 332
           YQRL+HMV
Sbjct: 314 YQRLRHMV 321


>gi|2736123|gb|AAB94062.1| RPB140 [Aristolochia gigantea]
          Length = 555

 Score =  347 bits (889), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 184/374 (49%), Positives = 233/374 (62%), Gaps = 86/374 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+ +RMDT A+VLYYP KPLVTT + E+                          
Sbjct: 231 MGMYVTNYQLRMDTQAYVLYYPQKPLVTTHATEH-------------------------- 264

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                              L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 265 -------------------LHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 305

Query: 121 SVFFRSYKDAESKRIGDQ-EEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+FFRSY+D E KR+G   +E+F +PNR+   GMR+  YDKLDDDG   PG R+SGDDV+
Sbjct: 306 SLFFRSYRD-EEKRMGTLVQEEFGRPNRENTMGMRHGSYDKLDDDGFAPPGTRISGDDVI 364

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +P  ++EL G   +F+KRD S  LR+SE+G+VDQV+ T N +G +F KIRVRSV
Sbjct: 365 IGKTSPIP--QEELPGQLSKFTKRDHSISLRHSESGVVDQVLYTTNAEGLRFTKIRVRSV 422

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           RI QIGDKF+SRHGQKGT G+ Y QE                                  
Sbjct: 423 RILQIGDKFSSRHGQKGTVGMTYTQEDMPWTIDGITPDIIVNPHAIPSRMTIGQLIECVM 482

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             V++  G+ GDATPF + V V  I   L E G+Q+RG E M+NGHTGR++ A +F+GPT
Sbjct: 483 GKVAAEVGKEGDATPFTE-VTVDGICKRLHECGFQMRGFETMYNGHTGRRLPAMIFVGPT 541

Query: 324 YYQRLKHMVDDKIH 337
           YYQRLKHMVDDKIH
Sbjct: 542 YYQRLKHMVDDKIH 555


>gi|68131914|gb|AAY85235.1| RNA polymerase II second largest subunit [Tetracentron sinense]
          Length = 951

 Score =  347 bits (889), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 179/364 (49%), Positives = 229/364 (62%), Gaps = 84/364 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+ +RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 636 MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA----------------------------- 666

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 667 ----------------MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 710

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY+D E K     +E F +PNR+   GMR+  YDKLDDDG+  PG RVSG+DV+I
Sbjct: 711 SLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 770

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT   P  +DE +G   R+++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RS+R
Sbjct: 771 GKTT--PIAQDESQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSIR 828

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 829 IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMG 888

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGR+++A +FLGPTY
Sbjct: 889 KVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTY 947

Query: 325 YQRL 328
           YQRL
Sbjct: 948 YQRL 951


>gi|46277267|gb|AAS86824.1| RNA polymerase II second largest subunit, partial [Eschscholzia
           californica]
          Length = 559

 Score =  347 bits (889), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 180/364 (49%), Positives = 228/364 (62%), Gaps = 84/364 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+ +RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 244 MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA----------------------------- 274

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 275 ----------------MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 318

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY+D E K     +E F +PNR+   GMR+  YDKLDDDG+  PG RVSG+DV+I
Sbjct: 319 SLFFRSYRDEEKKMGTLIKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 378

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT   P  +D+ +G   R+++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVR
Sbjct: 379 GKTT--PIAQDDSQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVR 436

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 437 IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMG 496

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGRK+ A +FLGPTY
Sbjct: 497 KVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRKLTAMIFLGPTY 555

Query: 325 YQRL 328
           YQRL
Sbjct: 556 YQRL 559


>gi|70794972|gb|AAZ08460.1| RNA polymerase II second largest subunit [Eschscholzia californica]
          Length = 951

 Score =  347 bits (889), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 180/364 (49%), Positives = 228/364 (62%), Gaps = 84/364 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+ +RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 636 MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA----------------------------- 666

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 667 ----------------MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 710

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY+D E K     +E F +PNR+   GMR+  YDKLDDDG+  PG RVSG+DV+I
Sbjct: 711 SLFFRSYRDEEKKMGTLIKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 770

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT   P  +D+ +G   R+++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVR
Sbjct: 771 GKTT--PIAQDDSQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVR 828

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 829 IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMG 888

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGRK+ A +FLGPTY
Sbjct: 889 KVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRKLTAMIFLGPTY 947

Query: 325 YQRL 328
           YQRL
Sbjct: 948 YQRL 951


>gi|189006590|gb|ABF18587.2| RNA polymerase II second largest subunit [Infundibulicybe gibba]
          Length = 689

 Score =  347 bits (889), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 180/366 (49%), Positives = 229/366 (62%), Gaps = 82/366 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF +RMDT+A++LYYP KPL TTR                              
Sbjct: 370 MGIYLTNFLIRMDTMANILYYPQKPLATTR------------------------------ 399

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 400 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 444

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP R     M++  YDKL+DDG+IAPG  V+G+D++I
Sbjct: 445 SIYYRSYMDLEKKSGIQQLEEFEKPMRDNTLRMKHGTYDKLEDDGLIAPGTGVAGEDIII 504

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E+GIVDQV++T N +G KF K+RVRS R
Sbjct: 505 GKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRSTR 564

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQ GDKFASRHGQKGT GI YRQE                                   
Sbjct: 565 IPQTGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLS 624

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D + V+ +ST L++ GYQ RG EVMF+GHTGRK+ AQV+LGPTY
Sbjct: 625 KVATLIGNEGDATPFTD-LTVESVSTFLRQKGYQSRGLEVMFHGHTGRKLQAQVYLGPTY 683

Query: 325 YQRLKH 330
           YQRLKH
Sbjct: 684 YQRLKH 689


>gi|300394702|gb|ADK11889.1| DNA-directed RNA polymerase II subunit two, partial [Coniophora sp.
           Braz-6]
          Length = 693

 Score =  347 bits (889), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 181/366 (49%), Positives = 229/366 (62%), Gaps = 82/366 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF VRMDT+A++LYYP KPL TTR                              
Sbjct: 374 MGIYLTNFLVRMDTMANILYYPQKPLATTR------------------------------ 403

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FR LPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 404 ---------------SMEYLKFRGLPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 448

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP R T   M++  YDK++DDG+IAPG  VSG+D++I
Sbjct: 449 SIYYRSYMDLEKKSGIQQLEEFEKPTRDTTLRMKHGTYDKIEDDGLIAPGTGVSGEDIII 508

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E GIVDQV++T N +G KF K+RVRS R
Sbjct: 509 GKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTR 568

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 569 IPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDLVINPHAIPSRMTIGHLVECLLS 628

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D + V+ +ST L++ GYQ RG EVM++GHTGRK+ AQV+LGPTY
Sbjct: 629 KVATLIGNEGDATPFTD-LTVESVSTFLRQKGYQSRGLEVMYHGHTGRKLRAQVYLGPTY 687

Query: 325 YQRLKH 330
           YQRLKH
Sbjct: 688 YQRLKH 693


>gi|88976144|gb|ABD59037.1| RNA polymerase II second largest subunit, partial [Inocybe cookei]
          Length = 688

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 180/366 (49%), Positives = 229/366 (62%), Gaps = 82/366 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF +RMDT+A++LYYP KPL TTR                              
Sbjct: 369 MGIYLTNFLIRMDTMANILYYPQKPLATTR------------------------------ 398

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 399 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 443

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP R T   M++  YDKL+DDG IAPG  V G+D++I
Sbjct: 444 SIYYRSYMDLEKKSGVQQLEEFEKPTRDTTLRMKHGTYDKLEDDGFIAPGTGVRGEDIII 503

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E+G VDQV++T N +G KF K+RVRS+R
Sbjct: 504 GKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTESGSVDQVLITTNSEGQKFVKVRVRSIR 563

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 564 IPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDLIINPHAIPSRMTIGHLVECLLS 623

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D + V+ +ST L++ GYQ RG EVM++GHTGRK+ AQV+LGPTY
Sbjct: 624 KVATLIGNEGDATPFTD-LTVESVSTFLRQRGYQSRGLEVMYHGHTGRKLQAQVYLGPTY 682

Query: 325 YQRLKH 330
           YQRLKH
Sbjct: 683 YQRLKH 688


>gi|68131916|gb|AAY85236.1| RNA polymerase II second largest subunit [Vitis piasezkii]
          Length = 951

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 179/364 (49%), Positives = 229/364 (62%), Gaps = 84/364 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+ +RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 636 MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA----------------------------- 666

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 667 ----------------MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 710

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY+D E K     +E F +PNR+   GMR+  YDKLDDDG+  PG RVSG+DV+I
Sbjct: 711 SLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 770

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT   P ++D+ +G   R+++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVR
Sbjct: 771 GKTT--PISQDDSQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVR 828

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 829 IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMG 888

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGR++ A +FLGPTY
Sbjct: 889 KVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTY 947

Query: 325 YQRL 328
           YQRL
Sbjct: 948 YQRL 951


>gi|300394764|gb|ADK11920.1| DNA-directed RNA polymerase II subunit two, partial
           [Pseudoclitocybe cyathiformis]
          Length = 569

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 181/368 (49%), Positives = 230/368 (62%), Gaps = 82/368 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF +RMDT+A++LYYP KPL TTR                              
Sbjct: 248 MGIYLTNFLIRMDTMANILYYPQKPLATTR------------------------------ 277

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 278 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 322

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP R     M++  YDKL+DDG+IAPG  V+G+D++I
Sbjct: 323 SIYYRSYMDLEKKSGIQQLEEFEKPLRDNTLRMKHGTYDKLEDDGLIAPGTGVAGEDIII 382

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E+GIVDQV++T N +G KF K+RVRS R
Sbjct: 383 GKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRSTR 442

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQ GDKFASRH QKGT GI YRQE                                   
Sbjct: 443 IPQTGDKFASRHXQKGTIGITYRQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLS 502

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D + V+ +ST L++ GYQ RG EVMF+GHTGRK+ AQV+LGPTY
Sbjct: 503 KVATLIGNEGDATPFTD-LTVESVSTXLRQKGYQSRGLEVMFHGHTGRKLQAQVYLGPTY 561

Query: 325 YQRLKHMV 332
           YQRLKHMV
Sbjct: 562 YQRLKHMV 569


>gi|46277269|gb|AAS86825.1| RNA polymerase II second largest subunit, partial [Platanus
           orientalis]
          Length = 536

 Score =  346 bits (888), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 180/364 (49%), Positives = 229/364 (62%), Gaps = 84/364 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+ +RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 221 MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA----------------------------- 251

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 252 ----------------MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 295

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY+D E K     +E F +PNR+   GMR+  YDKLDDDG+  PG RVSG+DV+I
Sbjct: 296 SLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 355

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT   P  ++E +G   R+++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVR
Sbjct: 356 GKTT--PIAQEEPQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVR 413

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 414 IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMG 473

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGRK++A +FLGPTY
Sbjct: 474 KVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRKLSAMIFLGPTY 532

Query: 325 YQRL 328
           YQRL
Sbjct: 533 YQRL 536


>gi|300394698|gb|ADK11887.1| DNA-directed RNA polymerase II subunit two, partial [Ceraceomyces
           borealis]
          Length = 693

 Score =  346 bits (888), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 179/367 (48%), Positives = 229/367 (62%), Gaps = 82/367 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF +RMDT+A++LYYP KPL TTR                              
Sbjct: 373 MGIYLTNFLIRMDTMANILYYPQKPLATTR------------------------------ 402

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 403 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 447

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP R+    M++  YDK++DDG+IAPG  V+G+D++I
Sbjct: 448 SIYYRSYMDLEKKSGIQQLEEFEKPTRENTLRMKHGTYDKIEDDGLIAPGTGVAGEDIII 507

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E GIVDQV++T N +G KF K+RVRS R
Sbjct: 508 GKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTR 567

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 568 IPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLS 627

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D + V+ +S  L + GYQ RG EVM++GHTGRK+ AQV+LGPTY
Sbjct: 628 KVATLLGNEGDATPFTD-LTVESVSKFLLQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTY 686

Query: 325 YQRLKHM 331
           YQRLKHM
Sbjct: 687 YQRLKHM 693


>gi|52699816|gb|AAU86970.1| DNA-dependent RNA polymerase II second largest subunit [Gyalecta
           jenensis]
          Length = 714

 Score =  346 bits (888), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 183/375 (48%), Positives = 237/375 (63%), Gaps = 84/375 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TNF  RMDT++++LYYP KPL TTR                              
Sbjct: 387 MGVFLTNFDERMDTMSNILYYPQKPLGTTR------------------------------ 416

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          +ME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 417 ---------------AMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 461

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+RSY + E KR+G    EQFEKP R     +++  YDKLDDDGIIAPG+RVSG+D++
Sbjct: 462 SLFYRSYMEQE-KRVGISLVEQFEKPLRSETLRVKHGTYDKLDDDGIIAPGVRVSGEDII 520

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +E+   TK  +KRD ST LR++E GIVD+V++T N +G KF K+R+R+ 
Sbjct: 521 IGKTAPIAPDSEEMGQRTKFHTKRDASTPLRSTENGIVDKVLVTTNAEGLKFVKVRMRTT 580

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           ++PQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 581 KVPQIGDKFASRHGQKGTIGITYRQEDMPFTADGIPPDLIINPHAIPSRMTIAHLIECLL 640

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VS+ +G  GDATPF D + V  +S LL+ +GYQ RG E+M+NGHTGRK+ AQ+FLGPT
Sbjct: 641 SKVSALRGCEGDATPFTD-ITVDSVSDLLRGHGYQSRGFEIMYNGHTGRKLVAQIFLGPT 699

Query: 324 YYQRLKHMVDDKIHS 338
           YYQRL+HMVDDKI +
Sbjct: 700 YYQRLRHMVDDKIXA 714


>gi|56694290|gb|AAW22885.1| RNA polymerase II second largest subunit [Equisetum hyemale]
          Length = 539

 Score =  346 bits (888), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 179/364 (49%), Positives = 229/364 (62%), Gaps = 85/364 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+ +R DTLA+VLYYP KPLVTTR+                             
Sbjct: 225 MGIYVTNYQLRXDTLAYVLYYPQKPLVTTRA----------------------------- 255

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 256 ----------------MEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFR 299

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+F+RSY+D E K+    +E+FE+PNR    GMR+  YDKLDDDG+  PG RVSG+DV+I
Sbjct: 300 SIFYRSYRDEEKKQGTLVKEEFERPNRDNTNGMRHGSYDKLDDDGLAPPGTRVSGEDVII 359

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  LP ++    G  +R++KRD ST LR+SE+G++DQV+LT N DG +F KIRVRSVR
Sbjct: 360 GKTTPLPXDD---SGQVQRYTKRDQSTCLRHSESGMIDQVLLTTNADGLRFVKIRVRSVR 416

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKF+SRHGQ GT G+ Y QE                                   
Sbjct: 417 IPQIGDKFSSRHGQXGTVGMTYTQEDMPWSQEGITPDIIVNPHAIPSRMTIGQLIECIMG 476

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGR+++A +FLGPTY
Sbjct: 477 KVAAHMGKEGDATPFTD-VTVDSISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTY 535

Query: 325 YQRL 328
           YQRL
Sbjct: 536 YQRL 539


>gi|119644276|gb|ABL85616.1| RNA polymerase II second largest subunit [uncultured Ascomycota]
          Length = 326

 Score =  346 bits (888), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 185/373 (49%), Positives = 235/373 (63%), Gaps = 84/373 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++ NF  RMD +A++LYYP KPL TT+S                             
Sbjct: 1   MGVFLMNFDQRMDIMANILYYPQKPLATTQS----------------------------- 31

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L+FR+LPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 32  ----------------MEFLKFRDLPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 75

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+RSY D E KRIG +  EQFEKP R     +++  YDKLD+DGI+APG+RVSG+D++
Sbjct: 76  SLFYRSYTDQE-KRIGMNVVEQFEKPYRNDTLKLKHGTYDKLDEDGIVAPGVRVSGEDII 134

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK  SKRD ST LR++E GIVDQV++T N +G +F K+R+R+ 
Sbjct: 135 IGKTAPIAPDAEELGQRTKAHSKRDASTPLRSTENGIVDQVLITTNAEGLRFVKVRMRTT 194

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 195 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQL 254

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             V+S  G  GDATPF + V V  +S LL++ GYQ RG E+M++GHTGRK+ AQVFLGPT
Sbjct: 255 SKVASLSGYEGDATPFTE-VTVDSVSRLLRDNGYQSRGFEIMYHGHTGRKLVAQVFLGPT 313

Query: 324 YYQRLKHMVDDKI 336
           YYQRL+HMVDDKI
Sbjct: 314 YYQRLRHMVDDKI 326


>gi|103001385|gb|ABF71505.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
           chlorophanum]
          Length = 709

 Score =  346 bits (888), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 188/369 (50%), Positives = 231/369 (62%), Gaps = 84/369 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 388 MGVFLTNYDQRMDTMANILYYPQKPLATTR------------------------------ 417

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 418 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 462

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+RSY D E KRIG    EQFEKP R     +++  YDKLDDDGI+APG+RVSG+D++
Sbjct: 463 SLFYRSYTDQE-KRIGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDII 521

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK   KRD ST LR++E GIVDQV+LT N +G KF K+R+R+ 
Sbjct: 522 IGKTAPISPDAEELGQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLKFVKVRMRTT 581

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 582 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTKEGVVPDLIINPHAIPSRMTIAHLIECQL 641

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 642 SKVSSLRGFEGDATPFTE-VTVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 700

Query: 324 YYQRLKHMV 332
           YYQRL+ MV
Sbjct: 701 YYQRLRXMV 709


>gi|70794976|gb|AAZ08462.1| RNA polymerase II second largest subunit [Platanus orientalis]
          Length = 923

 Score =  346 bits (888), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 180/364 (49%), Positives = 229/364 (62%), Gaps = 84/364 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+ +RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 608 MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA----------------------------- 638

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 639 ----------------MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 682

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY+D E K     +E F +PNR+   GMR+  YDKLDDDG+  PG RVSG+DV+I
Sbjct: 683 SLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 742

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT   P  ++E +G   R+++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVR
Sbjct: 743 GKTT--PIAQEEPQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVR 800

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 801 IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMG 860

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGRK++A +FLGPTY
Sbjct: 861 KVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRKLSAMIFLGPTY 919

Query: 325 YQRL 328
           YQRL
Sbjct: 920 YQRL 923


>gi|374250717|gb|AEY99981.1| RNA polymerase II second largest subunit, partial [Athelia rolfsii]
 gi|374250719|gb|AEY99982.1| RNA polymerase II second largest subunit, partial [Athelia rolfsii]
          Length = 337

 Score =  346 bits (888), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 178/369 (48%), Positives = 232/369 (62%), Gaps = 82/369 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+++TNF +RMDT+A++LYYP KPL TTR                              
Sbjct: 15  MGIFLTNFLIRMDTMANILYYPQKPLATTR------------------------------ 44

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 45  ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 89

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP+R+    M++  YDK++DDG+IAPG  V G+D++I
Sbjct: 90  SIYYRSYMDLEKKSGIQQLEEFEKPSRENTLRMKHGTYDKIEDDGLIAPGTGVRGEDIII 149

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E GIVDQV++T N +G KF K+RVRS R
Sbjct: 150 GKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVDQVLITTNHEGQKFVKVRVRSTR 209

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 210 IPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDLIINPHAIPSRMTIGHLVECLLS 269

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D + V+ +S  L++ GYQ RG EVM++GHTG+K+ AQ++LGPTY
Sbjct: 270 KVATLIGNEGDATPFTD-LTVESVSKFLRQRGYQSRGLEVMYHGHTGKKLQAQIYLGPTY 328

Query: 325 YQRLKHMVD 333
           YQRLKHMVD
Sbjct: 329 YQRLKHMVD 337


>gi|103001903|gb|ABF71526.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
           flavum]
          Length = 699

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 187/368 (50%), Positives = 230/368 (62%), Gaps = 84/368 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 379 MGVFLTNYDQRMDTMANILYYPQKPLATTR------------------------------ 408

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 409 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 453

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+RSY D E KRIG    EQFEKP R     +++  YDKLDDDGI+APG+RVSG+D++
Sbjct: 454 SLFYRSYTDQE-KRIGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDII 512

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK   KRD ST LR++E GIVDQV+LT N +G KF K+R+R+ 
Sbjct: 513 IGKTAPISPDAEELGQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLKFVKVRMRTT 572

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 573 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTKEGVVPDLIINPHAIPSRMTIAHLIECQL 632

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 633 SKVSSLRGFEGDATPFTE-VTVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 691

Query: 324 YYQRLKHM 331
           YYQR +HM
Sbjct: 692 YYQRXRHM 699


>gi|68131848|gb|AAY85202.1| RNA polymerase II second largest subunit [Dianthus caryophyllus]
          Length = 674

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 181/364 (49%), Positives = 227/364 (62%), Gaps = 84/364 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+  RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 359 MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA----------------------------- 389

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 390 ----------------MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 433

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY+D E K     +E F +P+R    GMR+  YDKLDDDG+  PG RVSG+DV+I
Sbjct: 434 SLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 493

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT   P + +E +G   R+S++D S  LR+SE+GIVDQV+LT N DG +F K+RVRSVR
Sbjct: 494 GKTT--PLSPEEAQGPAARYSRKDHSISLRHSESGIVDQVLLTTNADGLRFVKVRVRSVR 551

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 552 IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMG 611

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V+++ G+ GDATPF D V V  IS  LQ+ GYQ+RG E M+NGHTGRK++A +FLGPTY
Sbjct: 612 KVAAHVGKEGDATPFTD-VTVDNISKALQKCGYQMRGFETMYNGHTGRKLSAMIFLGPTY 670

Query: 325 YQRL 328
           YQRL
Sbjct: 671 YQRL 674


>gi|70794974|gb|AAZ08461.1| RNA polymerase II second largest subunit [Liriodendron tulipifera]
          Length = 942

 Score =  345 bits (886), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 180/364 (49%), Positives = 227/364 (62%), Gaps = 84/364 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+ +RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 627 MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA----------------------------- 657

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 658 ----------------MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 701

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY+D E K     +E F +PNR+   GMR+  YDKLDDDG+  PG RVSG+DV+I
Sbjct: 702 SLFFRSYRDEEKKMGTLIKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 761

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT   P  +DE +G   R+++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVR
Sbjct: 762 GKTT--PIAQDESQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVR 819

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 820 IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMG 879

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V+ + G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGR++ A +FLGPTY
Sbjct: 880 KVAVHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTY 938

Query: 325 YQRL 328
           YQRL
Sbjct: 939 YQRL 942


>gi|103001206|gb|ABF71497.1| DNA-dependent RNA polymerase II second largest subunit [Acarospora
           fulvoviridula]
          Length = 708

 Score =  345 bits (886), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 186/369 (50%), Positives = 232/369 (62%), Gaps = 84/369 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 387 MGVFLTNYDQRMDTMANILYYPQKPLATTR------------------------------ 416

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 417 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 461

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+RSY D E KRIG    EQFEKP R     +++  YDKLD+DGI+APG+RVSG+D++
Sbjct: 462 SLFYRSYTDQE-KRIGMSVVEQFEKPMRSDTLKLKHGTYDKLDEDGIVAPGVRVSGEDII 520

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK   KRD ST LR++E GIVDQV++T N +G +F K+R+R+ 
Sbjct: 521 IGKTAPIAPDAEELGQRTKLHVKRDVSTPLRSTENGIVDQVLITTNAEGLRFVKVRMRTT 580

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 581 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTKEGVVPDLIINPHAIPSRMTIAHLIECQL 640

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 641 SKVSSLRGFEGDATPFTE-VTVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 699

Query: 324 YYQRLKHMV 332
           YYQRL+HMV
Sbjct: 700 YYQRLRHMV 708


>gi|52699788|gb|AAU86956.1| DNA-dependent RNA polymerase II second largest subunit [Acarospora
           clauzadeana]
          Length = 723

 Score =  345 bits (886), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 188/373 (50%), Positives = 230/373 (61%), Gaps = 84/373 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG     +  RMDT+A++LYYP KPL TTR                              
Sbjct: 396 MGXXXXXYEQRMDTMANILYYPQKPLATTR------------------------------ 425

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 426 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 470

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+RSY D E KRIG    EQFEKP R     +++  YDKLDDDGI+APG+RVSG+D++
Sbjct: 471 SLFYRSYTDQE-KRIGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDII 529

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK   KRD ST LR++E GIVDQV+LT N +G +F K+R+R+ 
Sbjct: 530 IGKTAPIAPDAEELGQRTKLHIKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTT 589

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 590 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTKEGIVPDLIINPHAIPSRMTIAHLIECQL 649

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + + V  +S LL+E+GYQ RG EVM NGHTGRK+ AQVFLGPT
Sbjct: 650 SKVSSLRGFEGDATPFTE-ITVDSVSKLLREHGYQSRGFEVMHNGHTGRKLVAQVFLGPT 708

Query: 324 YYQRLKHMVDDKI 336
           YYQRL+HMVDDKI
Sbjct: 709 YYQRLRHMVDDKI 721


>gi|68131842|gb|AAY85199.1| RNA polymerase II second largest subunit [Cissus tuberosa]
          Length = 951

 Score =  345 bits (886), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 179/364 (49%), Positives = 229/364 (62%), Gaps = 84/364 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+ +RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 636 MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA----------------------------- 666

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 667 ----------------MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 710

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY+D E K     +E F +PNR+   GMR+  YDKLDDDG+  PG RVSG+DV+I
Sbjct: 711 SLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 770

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT   P ++D+ +G   R+++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVR
Sbjct: 771 GKTT--PISQDDSQGQPSRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVR 828

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 829 IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMG 888

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGR++ A +FLGPTY
Sbjct: 889 KVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTY 947

Query: 325 YQRL 328
           YQRL
Sbjct: 948 YQRL 951


>gi|46277279|gb|AAS86830.1| RPB140, partial [Liquidambar acalycina]
          Length = 540

 Score =  345 bits (886), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 182/364 (50%), Positives = 226/364 (62%), Gaps = 84/364 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+  RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 225 MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA----------------------------- 255

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+V+RG+FR
Sbjct: 256 ----------------MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSVDRGFFR 299

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY+D E K     +E F +PNR    GMR+  Y+KLDDDG+  PG RVSG+DV+I
Sbjct: 300 SLFFRSYRDEEKKMGTLVKEDFGRPNRADTMGMRHGSYEKLDDDGLAPPGTRVSGEDVII 359

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT   P  +DE +G   R+++RD ST LR+SETG+VDQV+LT N DG +F K+RVRSVR
Sbjct: 360 GKTT--PIAQDESQGQASRYTRRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVR 417

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 418 IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMG 477

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGR++ A +FLGPTY
Sbjct: 478 KVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTY 536

Query: 325 YQRL 328
           YQRL
Sbjct: 537 YQRL 540


>gi|70794970|gb|AAZ08459.1| RNA polymerase II second largest subunit [Astilbe sp. Yoshikawa
           s.n.]
          Length = 951

 Score =  345 bits (886), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 182/364 (50%), Positives = 225/364 (61%), Gaps = 84/364 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+  RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 636 MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA----------------------------- 666

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 667 ----------------MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 710

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY+D E K     +E F +PNR     MR+  YDKLDDDG+  PG RVSG+DV+I
Sbjct: 711 SLFFRSYRDEEKKMGTLVKEDFGRPNRNDTMNMRHGSYDKLDDDGLAPPGTRVSGEDVII 770

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT   P  +DE +G   R++KRD ST LR+SETG+VDQV+LT N DG +F K+RVRSVR
Sbjct: 771 GKTS--PIAQDESQGQASRYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVR 828

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 829 IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMG 888

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGR++ A +FLGPTY
Sbjct: 889 KVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTY 947

Query: 325 YQRL 328
           YQRL
Sbjct: 948 YQRL 951


>gi|52699902|gb|AAU87012.1| DNA-dependent RNA polymerase II second largest subunit
           [Trichoglossum hirsutum]
          Length = 709

 Score =  345 bits (885), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 187/371 (50%), Positives = 231/371 (62%), Gaps = 84/371 (22%)

Query: 2   GVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDS 61
           GV++TN+  RMDT+A++LYYP KPL TTR                               
Sbjct: 386 GVFLTNYDQRMDTMANILYYPQKPLATTR------------------------------- 414

Query: 62  VILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRS 121
                         SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FRS
Sbjct: 415 --------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRS 460

Query: 122 VFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           +F+RSY D E KRIG +  E FEKP R     +++  YDKLDDDGI+APG+RVSG+D++I
Sbjct: 461 LFYRSYSDQE-KRIGMNILETFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIII 519

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +    +EL   TK   KRD ST LR++E GIVDQV+LT N +G +F K+R+R+ +
Sbjct: 520 GKTAPISPESEELGQRTKYHVKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTK 579

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YR E                                   
Sbjct: 580 IPQIGDKFASRHGQKGTIGITYRSEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQLS 639

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPTY
Sbjct: 640 KVSSLRGFEGDATPFTE-VTVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTY 698

Query: 325 YQRLKHMVDDK 335
           YQRL+HMVD K
Sbjct: 699 YQRLRHMVDXK 709


>gi|46277263|gb|AAS86822.1| RNA polymerase II second largest subunit, partial [Liriodendron
           tulipifera]
          Length = 539

 Score =  345 bits (885), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 180/364 (49%), Positives = 227/364 (62%), Gaps = 84/364 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+ +RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 224 MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA----------------------------- 254

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 255 ----------------MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 298

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY+D E K     +E F +PNR+   GMR+  YDKLDDDG+  PG RVSG+DV+I
Sbjct: 299 SLFFRSYRDEEKKMGTLIKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 358

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT   P  +DE +G   R+++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVR
Sbjct: 359 GKTT--PIAQDESQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVR 416

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 417 IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMG 476

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V+ + G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGR++ A +FLGPTY
Sbjct: 477 KVAVHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTY 535

Query: 325 YQRL 328
           YQRL
Sbjct: 536 YQRL 539


>gi|93278283|gb|ABF06597.1| RNA polymerase II second largest subunit, partial [Baeospora
           myosura]
          Length = 690

 Score =  345 bits (885), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 180/368 (48%), Positives = 230/368 (62%), Gaps = 82/368 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+++TNF +RMDT+A++LYYP KPL TTR                              
Sbjct: 369 MGIFLTNFLIRMDTMANILYYPQKPLATTR------------------------------ 398

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 399 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 443

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP R+    M++  YDKL++DG+IAPG  V G+D++I
Sbjct: 444 SIYYRSYMDLEKKSGVQQLEEFEKPARENTLRMKHGTYDKLEEDGLIAPGTGVRGEDIII 503

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E GIVDQV++T N +G KF KIRVRS R
Sbjct: 504 GKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVDQVLITTNSEGQKFVKIRVRSTR 563

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 564 IPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLS 623

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D + V+ +S  L++ GYQ RG EVM++GHTGRK+ AQV+LGPTY
Sbjct: 624 KVATLIGNEGDATPFTD-LTVESVSMYLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTY 682

Query: 325 YQRLKHMV 332
           YQRLKHMV
Sbjct: 683 YQRLKHMV 690


>gi|52699782|gb|AAU86953.1| DNA-dependent RNA polymerase II second largest subunit [Acarospora
           schleicheri]
          Length = 720

 Score =  345 bits (885), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 186/369 (50%), Positives = 231/369 (62%), Gaps = 84/369 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++T +  RMDT+A++LYYP KPL TTR                              
Sbjct: 399 MGVFLTXYXQRMDTMANILYYPQKPLATTR------------------------------ 428

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 429 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 473

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+RSY D E KRIG    EQFEKP R     +++  YDKLDDDGI+APG+RVSG+D++
Sbjct: 474 SLFYRSYTDQE-KRIGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDII 532

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK   KRD ST LR++E GIVDQV+LT N +G +F K+R+R+ 
Sbjct: 533 IGKTAPIAPDAEELGQRTKLHIKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTT 592

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 593 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTKEGIVPDLIINPHAIPSRMTIAHLIECQL 652

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + + V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 653 SKVSSLRGFEGDATPFTE-ITVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 711

Query: 324 YYQRLKHMV 332
           YYQRL+HMV
Sbjct: 712 YYQRLRHMV 720


>gi|56694292|gb|AAW22886.1| RNA polymerase II second largest subunit [Isoetes sp. JZ73]
          Length = 536

 Score =  345 bits (885), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 178/363 (49%), Positives = 230/363 (63%), Gaps = 84/363 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+ +RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 222 MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA----------------------------- 252

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 253 ----------------MEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFR 296

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+F+RSY++ E K+    +E+FE+PNR+   GMR+  YDKLDDDG+  PG RVSG+DV+I
Sbjct: 297 SIFYRSYREEEXKQGSLVKEEFERPNRENTLGMRHGSYDKLDDDGLAPPGTRVSGEDVII 356

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT+ LP  +DE     +R++KRD ST LR+SE+G++DQV+LT N DG +F K RVRS+R
Sbjct: 357 GKTVPLP--QDETGTQAQRYTKRDQSTPLRHSESGMIDQVLLTTNADGLRFVKTRVRSIR 414

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 415 IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTMEGITPDIIVNPHAIXSRMTIGQLIECIMG 474

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGR ++A +FLGPTY
Sbjct: 475 KVAAHMGKEGDATPFTD-VTVDNISRALHKCGYQMRGFERMYNGHTGRPLSAMIFLGPTY 533

Query: 325 YQR 327
           YQR
Sbjct: 534 YQR 536


>gi|45545347|gb|AAS67521.1| DNA-dependent RNA polymerase II second largest subunit, partial
           [Sphaerophorus globosus]
          Length = 903

 Score =  345 bits (885), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 183/367 (49%), Positives = 232/367 (63%), Gaps = 84/367 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 584 MGVFLTNYDQRMDTMANILYYPQKPLATTR------------------------------ 613

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 614 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 658

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+RSY D E KR+G    EQFEKP R     +++  YDKLDDDGI+APG+RVSG+D++
Sbjct: 659 SLFYRSYTDQE-KRVGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDII 717

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK+ +KRD ST LR++E GIVDQV+L+ N DG +F K+R+R+ 
Sbjct: 718 IGKTAPISPDAEELGQRTKQHTKRDTSTPLRSTENGIVDQVLLSTNSDGLRFVKVRMRTT 777

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 778 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQL 837

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + V V  +S LL+E+GYQ RG E+M+NGHTG+K+ AQVFLGPT
Sbjct: 838 SKVSSLRGFEGDATPFTE-VTVDSVSRLLREHGYQSRGFEIMYNGHTGQKLRAQVFLGPT 896

Query: 324 YYQRLKH 330
           YYQRL+H
Sbjct: 897 YYQRLRH 903


>gi|56694374|gb|AAW22927.1| RNA polymerase II second largest subunit [Dianthus sp. UWG]
          Length = 540

 Score =  345 bits (884), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 181/364 (49%), Positives = 227/364 (62%), Gaps = 84/364 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+  RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 225 MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA----------------------------- 255

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 256 ----------------MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 299

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY+D E K     +E F +P+R    GMR+  YDKLDDDG+  PG RVSG+DV+I
Sbjct: 300 SLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 359

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT   P + +E +G   R+S++D S  LR+SE+GIVDQV+LT N DG +F K+RVRSVR
Sbjct: 360 GKTT--PLSPEEAQGPAARYSRKDHSISLRHSESGIVDQVLLTTNADGLRFVKVRVRSVR 417

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 418 IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMG 477

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V+++ G+ GDATPF D V V  IS  LQ+ GYQ+RG E M+NGHTGRK++A +FLGPTY
Sbjct: 478 KVAAHVGKEGDATPFTD-VTVDNISKALQKCGYQMRGFETMYNGHTGRKLSAMIFLGPTY 536

Query: 325 YQRL 328
           YQRL
Sbjct: 537 YQRL 540


>gi|56694314|gb|AAW22897.1| RNA polymerase II second largest subunit [Ceratozamia miqueliana]
          Length = 552

 Score =  345 bits (884), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 184/369 (49%), Positives = 233/369 (63%), Gaps = 86/369 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+ +RMDTLA+VLYY  KPLVTTR+                             
Sbjct: 233 MGIYVTNYQLRMDTLAYVLYYXXKPLVTTRA----------------------------- 263

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+ +RG+FR
Sbjct: 264 ----------------MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSXDRGFFR 307

Query: 121 SVFFRSYKDAESKRIGDQ-EEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+RSY+D E KR+G   +E+F +PNR+   GMR+  Y KLDDDG+  PG RVSG+DV+
Sbjct: 308 SLFYRSYRD-EEKRMGTLVKEEFGRPNRENTTGMRHGSYXKLDDDGLAPPGTRVSGEDVI 366

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT   P  +DE  G   R++KRD ST LR+SE+G+VDQV+LT N DG +F K+R+RSV
Sbjct: 367 IGKTT--PVTQDESGGQAARYTKRDQSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSV 424

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           RIPQIGDKF+SRHGQKGT G+ Y QE                                  
Sbjct: 425 RIPQIGDKFSSRHGQKGTVGMTYCQEDMPWTVEGITPDIIVNPHAIPXRMTIGQLIECIM 484

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGR+++A +FLGPT
Sbjct: 485 GKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPT 543

Query: 324 YYQRLKHMV 332
           YYQRLKHMV
Sbjct: 544 YYQRLKHMV 552


>gi|46277277|gb|AAS86829.1| RNA polymerase II second largest subunit, partial [Astilbe
           chinensis]
          Length = 540

 Score =  345 bits (884), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 182/364 (50%), Positives = 225/364 (61%), Gaps = 84/364 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+  RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 225 MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA----------------------------- 255

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 256 ----------------MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 299

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY+D E K     +E F +PNR     MR+  YDKLDDDG+  PG RVSG+DV+I
Sbjct: 300 SLFFRSYRDEEKKMGTLVKEDFGRPNRNDTMNMRHGSYDKLDDDGLAPPGTRVSGEDVII 359

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GK  T P  +DE +G   R++KRD ST LR+SETG+VDQV+LT N DG +F K+RVRSVR
Sbjct: 360 GK--TSPIAQDESQGQASRYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVR 417

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 418 IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMG 477

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGR++ A +FLGPTY
Sbjct: 478 KVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTY 536

Query: 325 YQRL 328
           YQRL
Sbjct: 537 YQRL 540


>gi|40641904|emb|CAD88602.1| RNA polymerase II second largest subunit [Alangium platanifolium]
          Length = 540

 Score =  345 bits (884), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 181/364 (49%), Positives = 226/364 (62%), Gaps = 84/364 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+  RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 225 MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA----------------------------- 255

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 256 ----------------MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 299

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY+D E K     +E F +P+R    GMR+  YDKLDDDG+  PG RVSG+DV+I
Sbjct: 300 SLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 359

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT   P  +D+ +G   R+S+RD ST LR+SETGIVDQV+LT N DG +F K+RVRSVR
Sbjct: 360 GKTT--PIAQDDSQGQASRYSRRDHSTSLRHSETGIVDQVLLTTNADGLRFVKVRVRSVR 417

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 418 IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMG 477

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGR++ + +FLGPTY
Sbjct: 478 KVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTSMIFLGPTY 536

Query: 325 YQRL 328
           YQRL
Sbjct: 537 YQRL 540


>gi|68131834|gb|AAY85195.1| RNA polymerase II second largest subunit [Callistemon subulatus]
          Length = 952

 Score =  344 bits (883), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 181/364 (49%), Positives = 224/364 (61%), Gaps = 84/364 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+  RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 637 MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA----------------------------- 667

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 668 ----------------MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 711

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY+D E K     +E F +P+R    GMR+  YDKLDDDG+  PG RVSG+DV+I
Sbjct: 712 SLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 771

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT   P  +D+ +G   R+S+RD S  LR+SETGIVDQV+LT N DG +F K+RVRSVR
Sbjct: 772 GKTT--PIAQDDAQGQASRYSRRDHSISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVR 829

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 830 IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMG 889

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V+++ G+ GDATPF D V V  IS  L   GYQ+RG E M+NGHTGR++ A +FLGPTY
Sbjct: 890 KVAAHMGKEGDATPFTD-VTVDNISKALHRCGYQMRGFETMYNGHTGRRLTAMIFLGPTY 948

Query: 325 YQRL 328
           YQRL
Sbjct: 949 YQRL 952


>gi|83415495|gb|ABC17955.1| RNA polymerase II second largest subunit precursor, partial
           [Spiromyces aspiralis]
          Length = 1058

 Score =  344 bits (883), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 180/373 (48%), Positives = 228/373 (61%), Gaps = 82/373 (21%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV +TN+ +RMDTL++VLYYP KPL  TR+                             
Sbjct: 371 MGVMLTNYQLRMDTLSNVLYYPQKPLAITRA----------------------------- 401

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           M+YL+FR+LPAG N+IVAILCY+GYNQEDS+I+N S+++RG FR
Sbjct: 402 ----------------MDYLKFRQLPAGQNAIVAILCYSGYNQEDSIIMNQSSIDRGLFR 445

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFR+Y+D E++       +FEKP R+T   +++  Y+KLD+DG++APG RV GDD++I
Sbjct: 446 SLFFRTYQDEENREGSAHVGRFEKPTRETTLRLKHGTYEKLDEDGLVAPGTRVVGDDIII 505

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P +  EL   TK  +K D S  LR++E GIVD+VMLT N DG +F K+RVRS R
Sbjct: 506 GKTTPIPADSLELGQRTKNHTKLDASKPLRSTEHGIVDRVMLTTNADGIRFVKVRVRSTR 565

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           +PQIGDKFASRHGQKGT G+ YR E                                   
Sbjct: 566 VPQIGDKFASRHGQKGTVGMTYRTEDMPFTAEGIVPDLIINPHAIPSRMTIGHLIECLLS 625

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            +S+  G+ GDATPF D V V+ IS  L   GY  RG EVM+NGHTGRK+ AQVFLGPTY
Sbjct: 626 KLSTLLGQDGDATPFTD-VTVEAISRELHSRGYHPRGFEVMYNGHTGRKLAAQVFLGPTY 684

Query: 325 YQRLKHMVDDKIH 337
            QRLKHMVDDKIH
Sbjct: 685 XQRLKHMVDDKIH 697


>gi|52699894|gb|AAU87008.1| DNA-dependent RNA polymerase II second largest subunit [Taphrina
           communis]
          Length = 731

 Score =  344 bits (883), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 180/374 (48%), Positives = 230/374 (61%), Gaps = 84/374 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG     + VRMDT+A++LYYP KPL TTR                              
Sbjct: 402 MGXXXXXYQVRMDTMANILYYPQKPLATTR------------------------------ 431

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDS+I+N S+++RG FR
Sbjct: 432 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSMIMNQSSIDRGLFR 476

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+F+R Y+D+E K   +Q ++FEKP R+T   M+ + YDKL+DDG++APG RVSG+DV++
Sbjct: 477 SMFYRVYQDSEEKIDMNQAQEFEKPTRETTMRMKRSTYDKLEDDGLVAPGTRVSGEDVIV 536

Query: 181 GKTITL--PENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRS 238
           GKT  L   EN  +L   +   +KRD ST LR++E GI+D+VM++ N DG+KF K+R+R+
Sbjct: 537 GKTAGLLKDENSADLAARSATQTKRDVSTQLRSTEAGIIDKVMVSTNSDGHKFVKVRIRA 596

Query: 239 VRIPQIGDKFASRHGQKGTCGIQYRQE--------------------------------- 265
            +IPQIGDKFASRHGQKGT G+ YR E                                 
Sbjct: 597 TKIPQIGDKFASRHGQKGTIGVTYRNEDMPFTSEGIVPDLIINPHAIPSRMTVAHLVECQ 656

Query: 266 ---VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGP 322
              V S  G  GDATPF D V V+ +S  L+E GY  RG E+M+NGHTGRK+ AQVFLGP
Sbjct: 657 LSKVGSLSGFEGDATPFTD-VTVEAVSNNLREQGYHSRGFEIMYNGHTGRKLMAQVFLGP 715

Query: 323 TYYQRLKHMVDDKI 336
           TYYQRLKH+VDDKI
Sbjct: 716 TYYQRLKHLVDDKI 729


>gi|56694286|gb|AAW22883.1| RNA polymerase II second largest subunit [Botrychium virginianum]
          Length = 488

 Score =  344 bits (882), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 174/363 (47%), Positives = 229/363 (63%), Gaps = 84/363 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+ +RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 174 MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA----------------------------- 204

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN++VAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 205 ----------------MEHLHFRQLPAGINAVVAIACYSGYNQEDSVIMNQSSIDRGFFR 248

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+F+RSY+D E K+    +E+FE+PNR+T  GMR+  YDKLDDDG+  PG RVSG+DV+I
Sbjct: 249 SIFYRSYRDEEKKQGTLVKEEFERPNRETTTGMRHGSYDKLDDDGLAPPGTRVSGEDVII 308

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P+++   +   +RF+KRD  T LR+SE+G+VDQV+LT N DG +F K+R+R +R
Sbjct: 309 GKTTPVPQDDSGTQA--QRFTKRDQXTCLRHSESGMVDQVLLTTNADGLRFVKVRMRXIR 366

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           +PQIGDKF+ RHGQKGT G+ Y QE                                   
Sbjct: 367 VPQIGDKFSXRHGQKGTVGMTYTQEDMPWTQEGITPDIIVNPHAIPSRMTIGQLIECIMG 426

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V+++ G+ GDATPF D V V  IS  L   GYQ+RG E M+NGHTGR++NA +FLGPTY
Sbjct: 427 KVAAHMGKEGDATPFTD-VTVDNISKALHRCGYQMRGFETMYNGHTGRRLNAMIFLGPTY 485

Query: 325 YQR 327
           YQR
Sbjct: 486 YQR 488


>gi|56694332|gb|AAW22906.1| RNA polymerase II second largest subunit [Agathis australis]
          Length = 514

 Score =  344 bits (882), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 184/365 (50%), Positives = 231/365 (63%), Gaps = 86/365 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+ +RMDTLA+VLYYP  PLVTTR+                             
Sbjct: 199 MGIYVTNYQLRMDTLAYVLYYPQXPLVTTRA----------------------------- 229

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 230 ----------------MEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFR 273

Query: 121 SVFFRSYKDAESKRIGDQ-EEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+FFRSY+D E KR+G   +E+F +PNR+   GMR+  YDKLD+DG+  PG RVSG+DV+
Sbjct: 274 SLFFRSYRD-EEKRMGTLVKEEFGRPNRENTTGMRHGSYDKLDEDGLAPPGTRVSGEDVI 332

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT   P  +DE  G   RFS+RD ST LR+SE+G+VDQV+LT N DG +F KIR+RSV
Sbjct: 333 IGKTT--PITQDEQGGQLSRFSRRDQSTSLRHSESGMVDQVLLTTNQDGLRFVKIRMRSV 390

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           RIPQIGDKF+SRHGQKGT G+ Y QE                                  
Sbjct: 391 RIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIM 450

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGRK++A +FLGPT
Sbjct: 451 GKVAAHMGKEGDATPFTD-VTVDSISKALHKCGYQMRGFETMYNGHTGRKLSAMIFLGPT 509

Query: 324 YYQRL 328
           YYQRL
Sbjct: 510 YYQRL 514


>gi|45545337|gb|AAS67516.1| DNA-dependent RNA polymerase II second largest subunit, partial
           [Neofusicoccum mangiferae]
          Length = 910

 Score =  343 bits (881), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 182/366 (49%), Positives = 225/366 (61%), Gaps = 82/366 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV +TN+ +RMDT+ +VLYYP KPL TTR                              
Sbjct: 591 MGVCLTNYELRMDTMVNVLYYPQKPLATTR------------------------------ 620

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYLRFRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 621 ---------------SMEYLRFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 665

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+F+RSY D E K      EQFEKP R     +++  YDKLDDDG++APG+RVSG+D++I
Sbjct: 666 SLFYRSYTDQEKKVGMAVVEQFEKPLRSDTMRLKHGTYDKLDDDGVVAPGVRVSGEDIII 725

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +  + +EL   TK   KRD ST LR++E GIVD V+LT N DG KF K+R R+ +
Sbjct: 726 GKTAPIAPDAEELGQRTKMHIKRDVSTPLRSTENGIVDSVLLTTNSDGLKFVKVRTRTTK 785

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YR E                                   
Sbjct: 786 IPQIGDKFASRHGQKGTIGITYRHEDMPFTREGLTPDIIINPHAIPSRMTIAHLIECLLS 845

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V + +G+ GDATPF D V V ++S+LL+E+GYQ RG EVM+NGHTG+K+ AQVFLGPTY
Sbjct: 846 KVGALRGQEGDATPFTD-VTVTQVSSLLREHGYQSRGFEVMYNGHTGKKLTAQVFLGPTY 904

Query: 325 YQRLKH 330
           YQRL+H
Sbjct: 905 YQRLRH 910


>gi|299849851|gb|ADJ57171.1| RNA polymerase II second largest subunit [Xylogone sphaerospora]
          Length = 322

 Score =  343 bits (881), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 183/369 (49%), Positives = 231/369 (62%), Gaps = 84/369 (22%)

Query: 2   GVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDS 61
           GV++TNF  RMDT+A++LYYP KPL TTR                               
Sbjct: 1   GVFLTNFDQRMDTMANILYYPQKPLATTR------------------------------- 29

Query: 62  VILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRS 121
                         SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FRS
Sbjct: 30  --------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRS 75

Query: 122 VFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           +F+R+Y D E KRIG +  EQFEKP R     +++  YDKLDDDGIIAPG+RVSG+D++I
Sbjct: 76  LFYRAYTDQE-KRIGMNVVEQFEKPFRADTLKLKHGTYDKLDDDGIIAPGVRVSGEDIII 134

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +  + +EL   TK   KRD ST LR++E GIVDQV++T N +G +F K+R+R+ +
Sbjct: 135 GKTAPIAPDSEELGQRTKAHVKRDASTPLRSTENGIVDQVLITTNAEGLRFVKVRMRTTK 194

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 195 IPQIGDKFASRHGQKGTIGITYRQEDMPFTRQGIVPDLIINPHAIPSRMTIAHLIECQLS 254

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            VS+ +G  GDATPF + V V  +S LL+ +GYQ RG E+M++GHTGRK+ AQVF GPTY
Sbjct: 255 KVSTLRGLEGDATPFTE-VTVDSVSKLLRAHGYQSRGFEIMYHGHTGRKLRAQVFFGPTY 313

Query: 325 YQRLKHMVD 333
           YQRL+HMVD
Sbjct: 314 YQRLRHMVD 322


>gi|103001854|gb|ABF71524.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
           discurrens]
          Length = 702

 Score =  343 bits (881), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 187/370 (50%), Positives = 228/370 (61%), Gaps = 84/370 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG    N+  RMDT+A++LYYP KPL TTR                              
Sbjct: 380 MGXXXXNYDQRMDTMANILYYPQKPLATTR------------------------------ 409

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 410 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 454

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+RSY D E KRIG    EQFEKP R     +++  YDKLDDDGI+APG+RVSG+D++
Sbjct: 455 SLFYRSYTDQE-KRIGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDII 513

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK   KRD ST LR++E GIVDQV+LT N +G KF K+R+R+ 
Sbjct: 514 IGKTAPIAPDAEELGQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLKFVKVRMRTT 573

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 574 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTKEGVVPDLIINPHAIPSRMTIAHLIECQL 633

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + V V  +S LL+E+GYQ RG E M+NGHTGRK+ AQVFLGPT
Sbjct: 634 SKVSSLRGFEGDATPFTE-VTVDSVSKLLREHGYQSRGFEAMYNGHTGRKLVAQVFLGPT 692

Query: 324 YYQRLKHMVD 333
           YYQRL+HMVD
Sbjct: 693 YYQRLRHMVD 702


>gi|300394708|gb|ADK11892.1| DNA-directed RNA polymerase II subunit two, partial [Hydnomerulius
           pinastri]
          Length = 358

 Score =  343 bits (881), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 180/364 (49%), Positives = 228/364 (62%), Gaps = 82/364 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF VRMDT+A++LYYP KPL TTR                              
Sbjct: 41  MGIYLTNFLVRMDTMANILYYPQKPLATTR------------------------------ 70

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+V+RG FR
Sbjct: 71  ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSVDRGLFR 115

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP R T   M++  YDK++DDG+IAPG  VSG+D++I
Sbjct: 116 SIYYRSYMDLEKKSGVQQLEEFEKPTRDTTLRMKHGTYDKIEDDGLIAPGTGVSGEDIII 175

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E GIVDQV++T N +G KF K+RVRS R
Sbjct: 176 GKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTR 235

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 236 IPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLS 295

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D + V+ +ST L++ GYQ RG EVM++GHTG+K+ AQV+LGPTY
Sbjct: 296 KVATLIGNEGDATPFTD-LTVESVSTFLRQKGYQSRGLEVMYHGHTGKKLQAQVYLGPTY 354

Query: 325 YQRL 328
           YQRL
Sbjct: 355 YQRL 358


>gi|291170442|gb|ADD82430.1| RNA polymerase II second largest subunit [Dothideomycetes sp. AN13]
          Length = 324

 Score =  343 bits (880), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 186/371 (50%), Positives = 230/371 (61%), Gaps = 84/371 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+ +TN+++RMDT+ +VLYYP KPL TTR                              
Sbjct: 1   MGINLTNYNLRMDTMVNVLYYPQKPLATTR------------------------------ 30

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 31  ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 75

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+RSY D E KR+G    E FEKP R     +++  YDKLD DGI+APG+RVSG+D++
Sbjct: 76  SLFYRSYLDQE-KRVGMSVVESFEKPMRSDTLRLKHGTYDKLDHDGIVAPGVRVSGEDII 134

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK   KRD ST LR++E GIVDQV+LT N +G KF K+R R+ 
Sbjct: 135 IGKTAPIAPDAEELGQRTKLHIKRDVSTPLRSTENGIVDQVILTTNTEGLKFVKVRTRTT 194

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           ++PQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 195 KVPQIGDKFASRHGQKGTIGITYRQEDMPFTREGLTPDLIINPHAIPSRMTIAHLIECLL 254

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             V + KG  GDATPF D V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 255 SKVGALKGCEGDATPFTD-VTVSSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 313

Query: 324 YYQRLKHMVDD 334
           YYQRL+HMVDD
Sbjct: 314 YYQRLRHMVDD 324


>gi|194320293|gb|ACF48387.1| RNA polymerase II second largest subunit [Rhizocarpon oederi]
          Length = 696

 Score =  343 bits (880), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 185/366 (50%), Positives = 231/366 (63%), Gaps = 84/366 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 378 MGVFLTNYDQRMDTMANILYYPQKPLATTR------------------------------ 407

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 408 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 452

Query: 121 SVFFRSYKDAESKRIGDQ-EEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+R+Y D E KR+G Q  EQFEKP R     +++  YDKLDDDGIIAPG+R+SG+D++
Sbjct: 453 SLFYRAYVDQE-KRVGMQLVEQFEKPMRSDTLRLKHGTYDKLDDDGIIAPGVRISGEDII 511

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK   KRD ST LR++E+GIVDQV+LT N +G +F K+R+R+ 
Sbjct: 512 IGKTAPIAADAEELGQRTKLHVKRDVSTPLRSTESGIVDQVLLTTNAEGLRFVKVRMRTT 571

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 572 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQL 631

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF D V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 632 SKVSSLRGFEGDATPFTD-VTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 690

Query: 324 YYQRLK 329
           YYQRL+
Sbjct: 691 YYQRLR 696


>gi|68131884|gb|AAY85220.1| RNA polymerase II second largest subunit [Berberis nervosa]
          Length = 540

 Score =  343 bits (880), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 179/364 (49%), Positives = 227/364 (62%), Gaps = 83/364 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+ +RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 224 MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA----------------------------- 254

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 255 ----------------MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 298

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY+D E K     +E F +PNR+   GMR+  YDKLDDDG+  PG RVSG+DV+I
Sbjct: 299 SLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 358

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +  +E +  G   +++KRD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVR
Sbjct: 359 GKTTPIAPDETQ-GGVASQYTKRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVR 417

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 418 IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTMEGITPDIIVNPHAIPSRMTIGQLIECIMG 477

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGRK+ A +FLGPTY
Sbjct: 478 KVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRKLTAMIFLGPTY 536

Query: 325 YQRL 328
           YQRL
Sbjct: 537 YQRL 540


>gi|40642976|emb|CAD90163.1| DNA-directed RNA polymerase II largest subunit [Convolvulus
           arvensis]
          Length = 321

 Score =  343 bits (880), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 179/364 (49%), Positives = 227/364 (62%), Gaps = 84/364 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+  RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 6   MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA----------------------------- 36

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 37  ----------------MEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFR 80

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY+D E K     +E F +P+R    GMR+  YDKLD+DG+  PG RVSG+DV+I
Sbjct: 81  SLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDEDGLAPPGTRVSGEDVII 140

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT   P ++++ +G   R++KRD ST LR+SETG+VDQV+LT N DG +F K+RVRSVR
Sbjct: 141 GKTT--PLSQEDAQGQAARYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVR 198

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 199 IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMG 258

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGR++ A +FLGPTY
Sbjct: 259 KVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTY 317

Query: 325 YQRL 328
           YQRL
Sbjct: 318 YQRL 321


>gi|56694316|gb|AAW22898.1| RNA polymerase II second largest subunit [Encephalartos barteri]
          Length = 527

 Score =  343 bits (880), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 181/365 (49%), Positives = 231/365 (63%), Gaps = 86/365 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+ +RMDTLA+VLYYP KPL TTR+                             
Sbjct: 212 MGIYVTNYQLRMDTLAYVLYYPQKPLXTTRA----------------------------- 242

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 243 ----------------MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 286

Query: 121 SVFFRSYKDAESKRIGDQ-EEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+RSY+D E KR+G   +E+F +PNR+   GMR+  YDKLDDDG+  PG RVSG+DV+
Sbjct: 287 SLFYRSYRD-EEKRMGTLVKEEFGRPNRENTTGMRHGSYDKLDDDGLAPPGTRVSGEDVI 345

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT   P  +DE  G   R++KRD ST LR+SE+G+VDQV+LT N DG +F K+R+RSV
Sbjct: 346 IGKTT--PVTQDESGGQAARYTKRDQSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSV 403

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           RIPQIGDKF+SRHGQKGT G+ Y QE                                  
Sbjct: 404 RIPQIGDKFSSRHGQKGTVGMTYCQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIM 463

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGR+++A +FLGPT
Sbjct: 464 GKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPT 522

Query: 324 YYQRL 328
           YYQRL
Sbjct: 523 YYQRL 527


>gi|300394700|gb|ADK11888.1| DNA-directed RNA polymerase II subunit two, partial [Chroogomphus
           helveticus]
          Length = 334

 Score =  343 bits (880), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 180/369 (48%), Positives = 231/369 (62%), Gaps = 83/369 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF VRMDT+A++LYYP KPL TTR                              
Sbjct: 12  MGIYLTNFLVRMDTMANILYYPQKPLATTR------------------------------ 41

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 42  ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 86

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP R T   M++  YDK++DDG+IAPG  VSG+D++I
Sbjct: 87  SIYYRSYMDLEKKSGVQQLEEFEKPTRDTTLRMKHGTYDKIEDDGLIAPGTGVSGEDIII 146

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E GIVDQV++T N +G KF K+RVRS R
Sbjct: 147 GKTAPIPPDNEELGQRTRTHTRRDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTR 206

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 207 IPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDIVINPHAIPSRMTIGHLVECLLS 266

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGH-TGRKINAQVFLGPT 323
            V++  G  GDATPF D + V+ +ST L++ GYQ RG EVM++GH +G+K+ AQV++GPT
Sbjct: 267 KVATLIGNEGDATPFTD-LTVESVSTFLRQKGYQSRGLEVMYHGHPSGKKLQAQVYVGPT 325

Query: 324 YYQRLKHMV 332
           YYQR KHMV
Sbjct: 326 YYQRPKHMV 334


>gi|103001965|gb|ABF71529.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
           cf. chlorophanum Nash 26]
          Length = 714

 Score =  343 bits (880), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 187/362 (51%), Positives = 226/362 (62%), Gaps = 84/362 (23%)

Query: 11  RMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVE 70
           RMDT A++LYYP KPL TTR                                        
Sbjct: 397 RMDTXANILYYPQKPLATTR---------------------------------------- 416

Query: 71  RGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFRSYKDA 130
                SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FRS+F+RSY D 
Sbjct: 417 -----SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQ 471

Query: 131 ESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPEN 189
           E KRIG    EQFEKP R     +++  YDKLDDDGI+APG+RVSG+D++IGKT  +  +
Sbjct: 472 E-KRIGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPISPD 530

Query: 190 EDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFA 249
            +EL   TK   KRD ST LR++E GIVDQV+LT N +G KF K+R+R+ +IPQIGDKFA
Sbjct: 531 AEELGQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLKFVKVRMRTTKIPQIGDKFA 590

Query: 250 SRHGQKGTCGIQYRQE------------------------------------VSSNKGEI 273
           SRHGQKGT GI YRQE                                    VSS +G  
Sbjct: 591 SRHGQKGTIGITYRQEDMPFTKEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFE 650

Query: 274 GDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQRLKHMVD 333
           GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPTYYQRL+HMVD
Sbjct: 651 GDATPFTE-VTVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVD 709

Query: 334 DK 335
           DK
Sbjct: 710 DK 711


>gi|110169452|gb|ABG53982.1| RNA polymerase II second largest subunit, partial [Entyloma
           calendulae]
          Length = 693

 Score =  343 bits (879), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 176/368 (47%), Positives = 233/368 (63%), Gaps = 82/368 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGVY+TN+ +RMDT+A++LYYP KPL TTR                              
Sbjct: 372 MGVYLTNYQMRMDTMANILYYPQKPLGTTR------------------------------ 401

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          +M++L+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 402 ---------------AMQHLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 446

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++R+Y D E K    + E FEKP+R+T   +++  YDKLD DG+ APG RVSG+D++I
Sbjct: 447 SLYYRTYTDLEKKSGMVEMEVFEKPSRETTIRLKHGTYDKLDADGLCAPGTRVSGEDIII 506

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT+ LP + +EL   +K  +KRD S  L+++E+GIVDQV++T N DG KF K+RVRS R
Sbjct: 507 GKTVPLPGDSEELGLRSKLHTKRDASMPLKSTESGIVDQVLVTTNGDGVKFVKVRVRSTR 566

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           +PQ GDKFASRHGQKGT GI YRQE                                   
Sbjct: 567 VPQTGDKFASRHGQKGTIGITYRQEDMPFTVEGVTPDIIINPHAIPSRMTIGHLVECLLS 626

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G+ GDATPF  ++ V+ +S +L+ +GYQ RG E+M+NGHTGRK+ AQV+LGPTY
Sbjct: 627 KVATLSGQEGDATPFT-SLTVEAVSNVLKGFGYQSRGLEIMYNGHTGRKLQAQVYLGPTY 685

Query: 325 YQRLKHMV 332
           YQRLKHMV
Sbjct: 686 YQRLKHMV 693


>gi|300394724|gb|ADK11900.1| DNA-directed RNA polymerase II subunit two, partial [Leucogyrophana
           mollusca]
          Length = 316

 Score =  343 bits (879), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 180/362 (49%), Positives = 226/362 (62%), Gaps = 82/362 (22%)

Query: 6   TNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILN 65
           TNF VRMDT+A++LYYP KPL TTR                                   
Sbjct: 1   TNFLVRMDTMANILYYPQKPLATTR----------------------------------- 25

Query: 66  ASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFR 125
                     SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FRS+++R
Sbjct: 26  ----------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYR 75

Query: 126 SYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTIT 185
           SY D E K    Q E+FEKP R T   M++  YDK++DDG+IAPG  VSG+D++IGKT  
Sbjct: 76  SYMDLEKKSGVQQLEEFEKPTRDTTLRMKHGTYDKIEDDGLIAPGTGVSGEDIIIGKTAP 135

Query: 186 LPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIG 245
           +P + +EL   T+  ++RD ST L+++E GIVDQV++T N +G KF K+RVRS RIPQIG
Sbjct: 136 IPPDSEELGQRTRTHTRRDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTRIPQIG 195

Query: 246 DKFASRHGQKGTCGIQYRQE------------------------------------VSSN 269
           DKFASRHGQKGT GI YRQE                                    V++ 
Sbjct: 196 DKFASRHGQKGTIGITYRQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLSKVATL 255

Query: 270 KGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQRLK 329
            G  GDATPF D + V+ +ST L++ GYQ RG EVM++GHTGRK+ AQV+LGPTYYQRLK
Sbjct: 256 IGNEGDATPFTD-LTVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTYYQRLK 314

Query: 330 HM 331
           HM
Sbjct: 315 HM 316


>gi|56694324|gb|AAW22902.1| RNA polymerase II second largest subunit [Zamia integrifolia]
          Length = 556

 Score =  343 bits (879), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 181/365 (49%), Positives = 231/365 (63%), Gaps = 86/365 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+ +RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 241 MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA----------------------------- 271

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 272 ----------------MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 315

Query: 121 SVFFRSYKDAESKRIGDQ-EEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+RSY+D E KR+G   +E+F +PNR+   GMR+  YDKLDDDG+  PG RVSG+DV+
Sbjct: 316 SLFYRSYRD-EEKRMGTLVKEEFGRPNRENTTGMRHGSYDKLDDDGLAPPGTRVSGEDVI 374

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT   P  +DE  G   R++KRD ST LR+S +G+VDQV+LT N DG +F K+R+RSV
Sbjct: 375 IGKTT--PVTQDESGGQAARYTKRDQSTSLRHSXSGMVDQVLLTTNADGLRFVKVRMRSV 432

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           RIPQIGDKF+SRHGQKGT G+ Y QE                                  
Sbjct: 433 RIPQIGDKFSSRHGQKGTVGMTYCQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIM 492

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGR+++A +FLGPT
Sbjct: 493 GKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPT 551

Query: 324 YYQRL 328
           YYQRL
Sbjct: 552 YYQRL 556


>gi|103001406|gb|ABF71506.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
           chlorophanum]
          Length = 707

 Score =  342 bits (878), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 186/365 (50%), Positives = 228/365 (62%), Gaps = 84/365 (23%)

Query: 5   ITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVIL 64
           +TN+  RMDT+A++LYYP KPL TTR                                  
Sbjct: 390 LTNYDQRMDTMANILYYPQKPLATTR---------------------------------- 415

Query: 65  NASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFF 124
                      SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FRS+F+
Sbjct: 416 -----------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFY 464

Query: 125 RSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKT 183
           RSY D E KRIG    EQFEKP R     +++  YDKLDDDGI+APG+RVSG+D++IGKT
Sbjct: 465 RSYTDQE-KRIGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKT 523

Query: 184 ITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQ 243
             +  + +EL   TK   KRD ST LR++E GIVDQV+LT N +G KF K+R+R+ +IPQ
Sbjct: 524 APISPDAEELGQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLKFVKVRMRTTKIPQ 583

Query: 244 IGDKFASRHGQKGTCGIQYRQE------------------------------------VS 267
           IGDKFASRHGQKGT GI YRQE                                    VS
Sbjct: 584 IGDKFASRHGQKGTIGITYRQEDMPFTKEGVVPDLIINPHAIPSRMTIAHLIECQLSKVS 643

Query: 268 SNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQR 327
           S +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPTYYQR
Sbjct: 644 SLRGFEGDATPFTE-VTVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQR 702

Query: 328 LKHMV 332
           L+HMV
Sbjct: 703 LRHMV 707


>gi|123979372|gb|ABM81511.1| RNA polymerase II second largest subunit [Rhizocarpon superficiale]
          Length = 703

 Score =  342 bits (878), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 183/366 (50%), Positives = 229/366 (62%), Gaps = 84/366 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+  RMDT+A++LYYP  PL TTR                              
Sbjct: 385 MGVFLTNYDQRMDTMANILYYPQNPLATTR------------------------------ 414

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+V+RG FR
Sbjct: 415 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSVDRGLFR 459

Query: 121 SVFFRSYKDAESKRIGDQ-EEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+R+Y D E KR+G    EQFEKP R     +++  YDKLDDDGI+APG+R+SG+D++
Sbjct: 460 SLFYRAYTDQE-KRVGTSVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRISGEDII 518

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK   KRD ST LR++E GIVDQV+LT N +G +F K+R+R+ 
Sbjct: 519 IGKTAPIAPDAEELGQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTT 578

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 579 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGIVPDLIINPHAIPSRMTIAHLIECQL 638

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF D V V  +S+LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 639 SKVSSLRGFEGDATPFTD-VTVDSVSSLLREHGYQSRGFEVMYNGHTGRKLAAQVFLGPT 697

Query: 324 YYQRLK 329
           YYQRL+
Sbjct: 698 YYQRLR 703


>gi|89274888|gb|ABD65885.1| RNA polymerase II second largest subunit, partial [Rickenella
           fibula]
          Length = 657

 Score =  342 bits (878), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 178/363 (49%), Positives = 230/363 (63%), Gaps = 82/363 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF VRMDT+A++LYYP KPL TTR                              
Sbjct: 341 MGIYLTNFLVRMDTMANILYYPQKPLATTR------------------------------ 370

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 371 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 415

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP+R+T   M++  YDKL+DDG+IAPG  V+G+D++I
Sbjct: 416 SMYYRSYMDLEKKSGIQQLEEFEKPSRETTLRMKHGTYDKLEDDGLIAPGTIVNGEDIII 475

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E+GIVDQV++T N +G KF K+RVRS R
Sbjct: 476 GKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTESGIVDQVLVTTNSEGQKFVKVRVRSAR 535

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 536 IPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLS 595

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF + + V+ +ST L++ GYQ RG EVM++GHTGRK+ AQV+LGPTY
Sbjct: 596 KVATLIGNEGDATPFTE-LTVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTY 654

Query: 325 YQR 327
           YQR
Sbjct: 655 YQR 657


>gi|40644582|emb|CAD89877.1| RNA polymerase II, second largest subunit [Philadelphus sp. Oxelman
           2326]
          Length = 320

 Score =  342 bits (878), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 182/364 (50%), Positives = 226/364 (62%), Gaps = 85/364 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+  RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 6   MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA----------------------------- 36

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 37  ----------------MEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFR 80

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY+D E K     +E F +P+R    GMR+  YDKLDDDG+  PG RVSG+DV+I
Sbjct: 81  SLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 140

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT   P  +DE +G   R++KRD ST LR+SETG+VDQV+LT N DG +F K+RVRSVR
Sbjct: 141 GKTT--PITQDESQGQA-RYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVR 197

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 198 IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMG 257

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGR++ A +FLGPTY
Sbjct: 258 KVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTY 316

Query: 325 YQRL 328
           YQRL
Sbjct: 317 YQRL 320


>gi|103001677|gb|ABF71517.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
           chlorophanum]
          Length = 704

 Score =  342 bits (878), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 186/365 (50%), Positives = 228/365 (62%), Gaps = 84/365 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 387 MGVFLTNYDQRMDTMANILYYPQKPLATTR------------------------------ 416

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 417 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 461

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+RSY D E KRIG    EQFEKP R     +++  YDKLDDDGI+APG+RVSG+D++
Sbjct: 462 SLFYRSYTDQE-KRIGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDII 520

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK   KRD ST LR++E GIVDQV+LT N +G KF K+R+R+ 
Sbjct: 521 IGKTAPIAPDAEELGQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLKFVKVRMRTT 580

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 581 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTMEGVVPDLIINPHAIPSRMTIAHLIECQL 640

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 641 SKVSSLRGFEGDATPFTE-VTVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 699

Query: 324 YYQRL 328
           YYQRL
Sbjct: 700 YYQRL 704


>gi|45545305|gb|AAS67500.1| DNA-dependent RNA polymerase II second largest subunit, partial
           [Baeomyces sp. SLJ472]
          Length = 894

 Score =  342 bits (878), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 184/367 (50%), Positives = 229/367 (62%), Gaps = 84/367 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 575 MGVFLTNYDERMDTMANILYYPQKPLATTR------------------------------ 604

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 605 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 649

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+FFR+Y D E KRIG    EQFEKP R     +++  YDKLDDDGI+APG+RVSG+D++
Sbjct: 650 SLFFRTYTDQE-KRIGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDII 708

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK   KRD ST LR +E GIVD+V+LT N +G +F K+R+R+ 
Sbjct: 709 IGKTAPIAPDAEELGQRTKLHIKRDVSTPLRTTENGIVDKVLLTTNAEGLRFVKVRMRTT 768

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YR E                                  
Sbjct: 769 KIPQIGDKFASRHGQKGTIGITYRMEDMPFTAEGIVPDLIINPHAIPSRMTIAHLIECQL 828

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + V V  IS+LL+E+GYQ RG E+M+NGHTGRK+ AQVFLGPT
Sbjct: 829 SKVSSLRGFEGDATPFTE-VTVDSISSLLREHGYQSRGFEIMYNGHTGRKLVAQVFLGPT 887

Query: 324 YYQRLKH 330
           YYQRL+H
Sbjct: 888 YYQRLRH 894


>gi|109289351|gb|ABG29164.1| RNA polymerase II second largest subunit, partial [Entyloma
           arnoseridis]
          Length = 695

 Score =  342 bits (877), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 176/368 (47%), Positives = 233/368 (63%), Gaps = 82/368 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGVY+TN+ +RMDT+A++LYYP KPL TTR                              
Sbjct: 374 MGVYLTNYQMRMDTMANILYYPQKPLGTTR------------------------------ 403

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          +M++L+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 404 ---------------AMQHLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 448

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++R+Y D E K    + E FEKP+R+T   +++  YDKLD DG+ APG RVSG+D++I
Sbjct: 449 SLYYRTYTDLEKKSGMVEMEVFEKPSRETTIRLKHGTYDKLDADGLCAPGTRVSGEDIII 508

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT+ LP + +EL   +K  +KRD S  L+++E+GIVDQV++T N DG KF K+RVRS R
Sbjct: 509 GKTVPLPCDSEELGLRSKLHTKRDASMPLKSTESGIVDQVLVTTNGDGVKFVKVRVRSTR 568

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           +PQ GDKFASRHGQKGT GI YRQE                                   
Sbjct: 569 VPQTGDKFASRHGQKGTIGITYRQEDMPFTVEGVTPDIIINPHAIPSRMTIGHLVECLLS 628

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G+ GDATPF  ++ V+ +S +L+ +GYQ RG E+M+NGHTGRK+ AQV+LGPTY
Sbjct: 629 KVATLSGQEGDATPFT-SLTVEAVSNVLKGFGYQSRGLEIMYNGHTGRKLQAQVYLGPTY 687

Query: 325 YQRLKHMV 332
           YQRLKHMV
Sbjct: 688 YQRLKHMV 695


>gi|300394706|gb|ADK11891.1| DNA-directed RNA polymerase II subunit two, partial [Gyrodon
           lividus]
          Length = 690

 Score =  342 bits (877), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 178/364 (48%), Positives = 227/364 (62%), Gaps = 82/364 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF VRMDT+A++LYYP KPL TTR                              
Sbjct: 373 MGIYLTNFLVRMDTMANILYYPQKPLATTR------------------------------ 402

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 403 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 447

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FE+P R +   M++  YDKL+DDG+IAPG  V G+D++I
Sbjct: 448 SIYYRSYMDLEKKSGVQQLEEFERPTRDSTLRMKHGTYDKLEDDGLIAPGTNVRGEDIII 507

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E GIVDQV++T N +G KF KIRVRS R
Sbjct: 508 GKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVDQVLITTNSEGQKFVKIRVRSTR 567

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           +PQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 568 VPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDLVINPHAIPSRMTIGHLVECLLS 627

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D + V+ +ST L++ GYQ RG EVM++GHTG+KI AQV+LGPTY
Sbjct: 628 KVATLIGNEGDATPFTD-LTVESVSTFLRQKGYQSRGLEVMYHGHTGKKIQAQVYLGPTY 686

Query: 325 YQRL 328
           YQRL
Sbjct: 687 YQRL 690


>gi|71841601|gb|AAZ43091.1| RNA polymerase II second largest subunit [Gunnera chilensis]
          Length = 534

 Score =  342 bits (877), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 177/364 (48%), Positives = 227/364 (62%), Gaps = 84/364 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+ +RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 219 MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA----------------------------- 249

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FRELPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 250 ----------------MEHLHFRELPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 293

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY+D E K     +E F +PNR    GMR+  YDKLD+DG+  PG RV+G+DV+I
Sbjct: 294 SLFFRSYRDEEKKMGTLVKEDFGRPNRDNTMGMRHGSYDKLDEDGLAPPGTRVAGEDVII 353

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT   P  +D+ +G   R+++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVR
Sbjct: 354 GKTT--PIAQDDTQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVR 411

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 412 IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTLEGITPDIIVNPHAIPSRMTIGQLIECIMG 471

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V+++ G+ GDATPF + V V  IS  L + GYQ+RG E M+NGHTGR++ A +FLGPTY
Sbjct: 472 KVAAHMGQEGDATPFTE-VTVDSISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTY 530

Query: 325 YQRL 328
           YQRL
Sbjct: 531 YQRL 534


>gi|123979368|gb|ABM81509.1| RNA polymerase II second largest subunit [Ramalina complanata]
          Length = 702

 Score =  342 bits (877), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 183/366 (50%), Positives = 230/366 (62%), Gaps = 84/366 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+ VRMDT+A++LYYP KPL TTR                              
Sbjct: 384 MGVFLTNYDVRMDTMANILYYPQKPLATTR------------------------------ 413

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 414 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 458

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+R+Y D E KR+G    EQFEKP R     +++  YDKLDDDGI++PG+RVSG+D++
Sbjct: 459 SLFYRAYTDQE-KRVGMSVVEQFEKPMRSDTLSLKHGTYDKLDDDGIVSPGVRVSGEDII 517

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK   KRD ST LR++E GIVDQV+L+ N DG +F K+R+R+ 
Sbjct: 518 IGKTAPIAPDAEELGQRTKLHVKRDTSTPLRSTENGIVDQVLLSTNSDGLRFVKVRMRTT 577

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 578 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQL 637

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 638 SKVSSLRGFEGDATPFTE-VTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 696

Query: 324 YYQRLK 329
           YYQRL+
Sbjct: 697 YYQRLR 702


>gi|56694342|gb|AAW22911.1| RNA polymerase II second largest subunit [Sciadopitys verticillata]
          Length = 514

 Score =  342 bits (876), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 182/365 (49%), Positives = 231/365 (63%), Gaps = 86/365 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+ +RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 199 MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA----------------------------- 229

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 230 ----------------MEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFR 273

Query: 121 SVFFRSYKDAESKRIGDQ-EEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+FFRSY+D E KR+G   +E+F +PNR+  Q MR+  YDKLDDDG+  PG RVSG+DV+
Sbjct: 274 SLFFRSYRD-EEKRMGTLVKEEFGRPNRENTQNMRHGSYDKLDDDGLAPPGTRVSGEDVI 332

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGK  T P  +DE  G   R+++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RSV
Sbjct: 333 IGK--TSPIAQDESGGQANRYTRRDQSTSLRHSESGMVDQVLLTTNQDGLRFVKVRMRSV 390

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           RIPQIGDKF+SRHG KGT G+ Y QE                                  
Sbjct: 391 RIPQIGDKFSSRHGXKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIM 450

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGRK++A +FLGPT
Sbjct: 451 GKVAAHMGKEGDATPFTD-VTVDSISKALHKCGYQMRGFETMYNGHTGRKLSAMIFLGPT 509

Query: 324 YYQRL 328
           YYQRL
Sbjct: 510 YYQRL 514


>gi|56694308|gb|AAW22894.1| RNA polymerase II second largest subunit [Marsilea quadrifolia]
          Length = 539

 Score =  342 bits (876), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 177/364 (48%), Positives = 227/364 (62%), Gaps = 84/364 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+ +RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 224 MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA----------------------------- 254

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQED VI+N S+++RG+FR
Sbjct: 255 ----------------MEHLHFRQLPAGINAIVAIACYSGYNQEDXVIMNQSSIDRGFFR 298

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+F+RSY+D E K+    +E+FE+P+R+   GMR+  YDKLDDDG+  PG RVSG+DV+I
Sbjct: 299 SIFYRSYRDEEKKQGTLVKEEFERPSRENTSGMRHGSYDKLDDDGLAPPGTRVSGEDVII 358

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT   P  +DE     +R++KRD ST LR+SE+G+ DQV+LT N DG +F KIRVRS+R
Sbjct: 359 GKTT--PVAQDETGTQAQRYTKRDQSTCLRHSESGMXDQVLLTTNADGLRFVKIRVRSIR 416

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 417 IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTQEGITPDIIVNPHAIPSRMTIGQLIECIMG 476

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V+++ G+ GDATP  D V V  IS  L + GYQ+RG E M+NGHTGR++ A +FLGPTY
Sbjct: 477 KVAAHMGKEGDATPXTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPTY 535

Query: 325 YQRL 328
           YQRL
Sbjct: 536 YQRL 539


>gi|299849860|gb|ADJ57177.1| RNA polymerase II second largest subunit [Scytalidium cuboideum]
          Length = 321

 Score =  342 bits (876), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 182/368 (49%), Positives = 230/368 (62%), Gaps = 84/368 (22%)

Query: 2   GVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDS 61
           GV++TNF  RMDT+A++LYYP KPL TTR                               
Sbjct: 1   GVFLTNFDQRMDTMANILYYPQKPLATTR------------------------------- 29

Query: 62  VILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRS 121
                         SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FRS
Sbjct: 30  --------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRS 75

Query: 122 VFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           +F+R+Y D E KRIG +  EQFEKP R     +++  YDKLDDDGIIAPG+RVSG+D++I
Sbjct: 76  LFYRAYTDQE-KRIGMNVVEQFEKPFRADTLKLKHGTYDKLDDDGIIAPGVRVSGEDIII 134

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +  + +EL   TK   KRD ST LR++E GIVDQV++T N +G +F K+R+R+ +
Sbjct: 135 GKTAPIAPDSEELGQRTKAHVKRDASTPLRSTENGIVDQVLITTNAEGLRFVKVRMRTTK 194

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 195 IPQIGDKFASRHGQKGTIGITYRQEDMPFTRQGIVPDLIINPHAIPSRMTIAHLIECQLS 254

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            VS+ +G  GDATPF + V V  +S LL+ +GYQ RG E+M++GHTGRK+ AQVF GPTY
Sbjct: 255 KVSTLRGLEGDATPFTE-VTVDSVSKLLRAHGYQSRGFEIMYHGHTGRKLKAQVFFGPTY 313

Query: 325 YQRLKHMV 332
           YQRL+HMV
Sbjct: 314 YQRLRHMV 321


>gi|89090016|gb|AAO64654.3| RNA polymerase II subunit RPB2, partial [Dacrymyces chrysospermus]
          Length = 870

 Score =  342 bits (876), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 176/368 (47%), Positives = 230/368 (62%), Gaps = 82/368 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF VRMDT+A++LYYP KPL TTR                              
Sbjct: 549 MGIYLTNFQVRMDTMANILYYPQKPLATTR------------------------------ 578

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 579 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 623

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E        E+FEKP+R T   M++  YDKL+ DG++APG+ ++G+D++I
Sbjct: 624 SIYYRSYTDMEKTTGIVPVEEFEKPHRDTTVRMKHGTYDKLEADGLVAPGIGINGEDIII 683

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  LP + +EL   T+  ++RD ST L+++E GIVDQV+++ N  G KF K+R+RS R
Sbjct: 684 GKTAPLPPDSEELGQRTRTHTRRDVSTPLKSTENGIVDQVLISTNESGVKFVKVRIRSTR 743

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT G+ YRQE                                   
Sbjct: 744 IPQIGDKFASRHGQKGTIGMTYRQEDMPFAGNGITPDIIINPHAIPSRMTIGHLVECLLS 803

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            +++  G  GDATPF D + V+ +S+LL+  GYQ RG EVM++GHTGRK+ AQV+LGPTY
Sbjct: 804 KLATLIGNEGDATPFTD-LTVESVSSLLRGKGYQQRGLEVMYHGHTGRKLQAQVYLGPTY 862

Query: 325 YQRLKHMV 332
           YQRLKHMV
Sbjct: 863 YQRLKHMV 870


>gi|291170436|gb|ADD82427.1| RNA polymerase II second largest subunit [Dothideomycetes sp. A6]
          Length = 323

 Score =  341 bits (875), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 185/370 (50%), Positives = 228/370 (61%), Gaps = 84/370 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TNF  RMDT+A++LYYP KPL TT+S                             
Sbjct: 1   MGVFLTNFXERMDTMANILYYPQKPLATTKS----------------------------- 31

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           MEYL+FRELPAG N+IVAI CY+GYNQEDSVI++ S+++RG FR
Sbjct: 32  ----------------MEYLKFRELPAGQNAIVAIACYSGYNQEDSVIMSQSSIDRGLFR 75

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+RSY D E KRIG    E+FEKP R     +++  YDK+DDDG+IAPG+RVSG+D++
Sbjct: 76  SLFYRSYTDQE-KRIGMSVVEKFEKPMRADTLRLKHGTYDKIDDDGLIAPGVRVSGEDII 134

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK   KRD ST LR++E+GIVDQV+LT N +G +F K+R R+ 
Sbjct: 135 IGKTAPIAPDAEELGQRTKLHVKRDTSTPLRSTESGIVDQVLLTTNSEGLRFVKVRTRTT 194

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           ++PQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 195 KVPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGLTPDLIINPHAIPSRMTIAHLIECLL 254

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             V S  G  GDATPF D V V  IS LL+  GYQ RG EVM+NGHTGRK+ AQVF GPT
Sbjct: 255 SKVCSLTGLEGDATPFTD-VTVDAISALLRNQGYQSRGFEVMYNGHTGRKLVAQVFFGPT 313

Query: 324 YYQRLKHMVD 333
           YYQRL+HMVD
Sbjct: 314 YYQRLRHMVD 323


>gi|89090014|gb|ABD46533.2| RNA polymerase II second largest subunit [Dacrymyces sp. FPL8953]
          Length = 676

 Score =  341 bits (875), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 176/368 (47%), Positives = 230/368 (62%), Gaps = 82/368 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF VRMDT+A++LYYP KPL TTR                              
Sbjct: 355 MGIYLTNFQVRMDTMANILYYPQKPLATTR------------------------------ 384

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 385 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 429

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E        E+FEKP+R T   M++  YDKL+ DG++APG+ ++G+D++I
Sbjct: 430 SIYYRSYTDMEKTTGIVPVEEFEKPHRDTTVRMKHGTYDKLEADGLVAPGIGINGEDIII 489

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  LP + +EL   T+  ++RD ST L+++E GIVDQV+++ N  G KF K+R+RS R
Sbjct: 490 GKTAPLPPDSEELGQRTRTHTRRDVSTPLKSTENGIVDQVLISTNESGVKFVKVRIRSTR 549

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT G+ YRQE                                   
Sbjct: 550 IPQIGDKFASRHGQKGTIGMTYRQEDMPFAGNGITPDIIINPHAIPSRMTIGHLVECLLS 609

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            +++  G  GDATPF D + V+ +S+LL+  GYQ RG EVM++GHTGRK+ AQV+LGPTY
Sbjct: 610 KLATLIGNEGDATPFTD-LTVESVSSLLRGKGYQQRGLEVMYHGHTGRKLQAQVYLGPTY 668

Query: 325 YQRLKHMV 332
           YQRLKHMV
Sbjct: 669 YQRLKHMV 676


>gi|297528029|gb|ADI46059.1| DNA-dependent RNA polymerase II [Morchella sp. Mel-31]
 gi|297528031|gb|ADI46060.1| DNA-dependent RNA polymerase II [Morchella sp. Mel-27]
 gi|297528033|gb|ADI46061.1| DNA-dependent RNA polymerase II [Morchella importuna]
 gi|297528035|gb|ADI46062.1| DNA-dependent RNA polymerase II [Morchella sp. Mel-27]
 gi|297528037|gb|ADI46063.1| DNA-dependent RNA polymerase II [Morchella sp. Mel-26]
 gi|297528039|gb|ADI46064.1| DNA-dependent RNA polymerase II [Morchella sp. Mel-26]
 gi|297528041|gb|ADI46065.1| DNA-dependent RNA polymerase II [Morchella sp. Mel-20]
 gi|297528043|gb|ADI46066.1| DNA-dependent RNA polymerase II [Morchella sp. Mel-26]
 gi|297528045|gb|ADI46067.1| DNA-dependent RNA polymerase II [Morchella frustrata]
 gi|297528047|gb|ADI46068.1| DNA-dependent RNA polymerase II [Morchella frustrata]
 gi|297528049|gb|ADI46069.1| DNA-dependent RNA polymerase II [Morchella frustrata]
 gi|297528051|gb|ADI46070.1| DNA-dependent RNA polymerase II [Morchella sp. Mel-29]
 gi|297528053|gb|ADI46071.1| DNA-dependent RNA polymerase II [Morchella sp. Mel-26]
 gi|297528057|gb|ADI46073.1| DNA-dependent RNA polymerase II [Morchella sp. Mel-20]
 gi|297528059|gb|ADI46074.1| DNA-dependent RNA polymerase II [Morchella populiphila]
 gi|297528061|gb|ADI46075.1| DNA-dependent RNA polymerase II [Morchella sp. Mel-20]
 gi|297528063|gb|ADI46076.1| DNA-dependent RNA polymerase II [Morchella sp. Mel-2]
 gi|297528065|gb|ADI46077.1| DNA-dependent RNA polymerase II [Morchella sp. Mel-2]
 gi|297528067|gb|ADI46078.1| DNA-dependent RNA polymerase II [Morchella sp. Mel-20]
 gi|297528069|gb|ADI46079.1| DNA-dependent RNA polymerase II [Morchella sp. Mel-20]
 gi|297528071|gb|ADI46080.1| DNA-dependent RNA polymerase II [Morchella sp. Mel-20]
 gi|297528073|gb|ADI46081.1| DNA-dependent RNA polymerase II [Morchella sp. Mel-20]
 gi|297528075|gb|ADI46082.1| DNA-dependent RNA polymerase II [Morchella sp. Mel-20]
 gi|297528079|gb|ADI46084.1| DNA-dependent RNA polymerase II [Morchella sp. Mel-20]
 gi|297528081|gb|ADI46085.1| DNA-dependent RNA polymerase II [Morchella sp. Mel-30]
 gi|297528083|gb|ADI46086.1| DNA-dependent RNA polymerase II [Morchella sp. Mel-20]
 gi|297528085|gb|ADI46087.1| DNA-dependent RNA polymerase II [Morchella sp. Mel-2]
 gi|297528087|gb|ADI46088.1| DNA-dependent RNA polymerase II [Morchella sp. Mel-2]
 gi|297528089|gb|ADI46089.1| DNA-dependent RNA polymerase II [Morchella sp. Mel-2]
 gi|297528091|gb|ADI46090.1| DNA-dependent RNA polymerase II [Morchella sp. Mel-8]
 gi|297528093|gb|ADI46091.1| DNA-dependent RNA polymerase II [Morchella sp. Mel-31]
 gi|297528095|gb|ADI46092.1| DNA-dependent RNA polymerase II [Morchella sp. Mel-31]
 gi|297528097|gb|ADI46093.1| DNA-dependent RNA polymerase II [Morchella sp. Mel-27]
 gi|297528099|gb|ADI46094.1| DNA-dependent RNA polymerase II [Morchella sp. Mel-31]
 gi|297528101|gb|ADI46095.1| DNA-dependent RNA polymerase II [Morchella sp. Mel-3]
 gi|297528103|gb|ADI46096.1| DNA-dependent RNA polymerase II [Morchella sp. Mel-3]
 gi|297528105|gb|ADI46097.1| DNA-dependent RNA polymerase II [Morchella sp. Mel-3]
 gi|297528111|gb|ADI46100.1| DNA-dependent RNA polymerase II [Morchella septimelata]
 gi|297528113|gb|ADI46101.1| DNA-dependent RNA polymerase II [Morchella importuna]
 gi|297528115|gb|ADI46102.1| DNA-dependent RNA polymerase II [Morchella septimelata]
 gi|297528117|gb|ADI46103.1| DNA-dependent RNA polymerase II [Morchella septimelata]
 gi|297528119|gb|ADI46104.1| DNA-dependent RNA polymerase II [Morchella septimelata]
 gi|297528121|gb|ADI46105.1| DNA-dependent RNA polymerase II [Morchella septimelata]
 gi|297528123|gb|ADI46106.1| DNA-dependent RNA polymerase II [Morchella septimelata]
 gi|297528125|gb|ADI46107.1| DNA-dependent RNA polymerase II [Morchella sp. Mel-27]
 gi|297528127|gb|ADI46108.1| DNA-dependent RNA polymerase II [Morchella sp. Mel-8]
 gi|297528129|gb|ADI46109.1| DNA-dependent RNA polymerase II [Morchella sp. Mel-20]
 gi|297528131|gb|ADI46110.1| DNA-dependent RNA polymerase II [Morchella sp. Mel-20]
 gi|297528133|gb|ADI46111.1| DNA-dependent RNA polymerase II [Morchella sp. Mel-29]
 gi|297528135|gb|ADI46112.1| DNA-dependent RNA polymerase II [Morchella sp. Mel-20]
 gi|297528137|gb|ADI46113.1| DNA-dependent RNA polymerase II [Morchella sp. Mel-8]
 gi|297528141|gb|ADI46115.1| DNA-dependent RNA polymerase II [Morchella sp. Mel-29]
 gi|297528143|gb|ADI46116.1| DNA-dependent RNA polymerase II [Morchella importuna]
 gi|297528147|gb|ADI46118.1| DNA-dependent RNA polymerase II [Morchella septimelata]
          Length = 318

 Score =  341 bits (875), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 185/365 (50%), Positives = 230/365 (63%), Gaps = 84/365 (23%)

Query: 3   VYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSV 62
           V++TNF  RMDT+A++LYYP KPL TTR                                
Sbjct: 1   VFLTNFAERMDTMANILYYPQKPLATTR-------------------------------- 28

Query: 63  ILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSV 122
                        SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FRS+
Sbjct: 29  -------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSL 75

Query: 123 FFRSYKDAESKRIGDQ-EEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIG 181
           F+RSY D E KRIG Q  E+FEKP R     +++  YDKLD+DG++APG+RVSG+D++IG
Sbjct: 76  FYRSYMDQE-KRIGMQVVEEFEKPTRANTLKLKHGTYDKLDEDGLVAPGVRVSGEDIIIG 134

Query: 182 KTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRI 241
           KT  +  + DE+    K  +KRD ST LR++E GIVDQVMLT N +G KF K+R+R+ +I
Sbjct: 135 KTAPIAPDVDEMGQRQKFHTKRDVSTPLRSTENGIVDQVMLTTNAEGLKFVKVRMRTTKI 194

Query: 242 PQIGDKFASRHGQKGTCGIQYRQE------------------------------------ 265
           PQIGDKFASRHGQKGT GI YRQE                                    
Sbjct: 195 PQIGDKFASRHGQKGTVGITYRQEDMPFTCEGIVPDLIINPHAIPSRMTIAHLIECQLSK 254

Query: 266 VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYY 325
           VSS +G  GDATPF D V V+ +STLL++ GYQ RG EVM+NG+TGRK+  QVFLGPTYY
Sbjct: 255 VSSLRGFEGDATPFTD-VTVESVSTLLRQNGYQSRGFEVMYNGYTGRKLVCQVFLGPTYY 313

Query: 326 QRLKH 330
           QRL+H
Sbjct: 314 QRLRH 318


>gi|120561263|gb|ABM27016.1| RNA polymerase II second largest subunit, partial [Catenaria
           anguillulae]
          Length = 892

 Score =  341 bits (875), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 179/366 (48%), Positives = 225/366 (61%), Gaps = 83/366 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TNF +RMDTLA++LYYP +PLVTTR                              
Sbjct: 574 MGVFLTNFQLRMDTLANILYYPQRPLVTTR------------------------------ 603

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SM YLRFRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 604 ---------------SMTYLRFRELPAGQNAIVAITCYSGYNQEDSVIMNQSSIDRGLFR 648

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D+E K  G +EE FEKPNR T   +R   YD LDDDGII+PG +V GDD+++
Sbjct: 649 SIYYRSYFDSEKKSGGVEEEVFEKPNRDTTMRLRRGTYDLLDDDGIISPGTQVKGDDIIL 708

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  LP++  E+   T + +K+D ST L+ +E G VD V++T N D  KF K+RVRS R
Sbjct: 709 GKTAPLPDDVSEMGARTTQ-TKKDVSTSLKATEKGYVDHVIVTTNADNLKFVKVRVRSTR 767

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           +PQ+GDKFASRHGQKGT G+ YRQE                                   
Sbjct: 768 VPQMGDKFASRHGQKGTVGVTYRQEDMPFSALGVTPDLIVNPHAIPSRMTIGHLVECLLS 827

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V +  G  GDATPF D + VQ+IS  L ++G+Q RG EVM+NGHTGRK++AQVF GPTY
Sbjct: 828 KVGALVGTEGDATPFTD-LTVQEISQQLAQHGFQQRGFEVMYNGHTGRKLDAQVFFGPTY 886

Query: 325 YQRLKH 330
           YQRLKH
Sbjct: 887 YQRLKH 892


>gi|52699837|gb|AAU86980.1| DNA-dependent RNA polymerase II second largest subunit [Morchella
           esculenta]
          Length = 708

 Score =  341 bits (875), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 187/373 (50%), Positives = 230/373 (61%), Gaps = 84/373 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG     F  RMDT+A++LYYP KPL TTR                              
Sbjct: 381 MGXXXXXFSERMDTMANILYYPQKPLATTR------------------------------ 410

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 411 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 455

Query: 121 SVFFRSYKDAESKRIGDQ-EEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+RSY D E KRIG Q  E+FEKP R     +++  YDKLD+DG++APG+RVSG+D++
Sbjct: 456 SLFYRSYMDQE-KRIGMQVVEEFEKPTRANTLKLKHGTYDKLDEDGLVAPGVRVSGEDII 514

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + DE+    K  +KRD ST LR++E GIVDQVMLT N +G KF K+R+R+ 
Sbjct: 515 IGKTAPITPDVDEMGQRQKYHTKRDVSTPLRSTENGIVDQVMLTTNAEGLKFVKVRMRTT 574

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 575 KIPQIGDKFASRHGQKGTVGITYRQEDMPFTCEGIVPDLIINPHAIPSRMTIAHLIECQL 634

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF D V V+ +STLL++ GYQ RG EVM+NG+TGRK+  QVFLGPT
Sbjct: 635 SKVSSLRGFEGDATPFTD-VTVESVSTLLRQNGYQSRGFEVMYNGYTGRKLVCQVFLGPT 693

Query: 324 YYQRLKHMVDDKI 336
           YYQR +HMV  KI
Sbjct: 694 YYQRXRHMVXXKI 706


>gi|299849845|gb|ADJ57167.1| RNA polymerase II second largest subunit [Xylogone sphaerospora]
          Length = 322

 Score =  341 bits (875), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 182/369 (49%), Positives = 230/369 (62%), Gaps = 84/369 (22%)

Query: 2   GVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDS 61
           GV++TNF  RMDT+A++LYYP KPL TTR                               
Sbjct: 1   GVFLTNFDQRMDTMANILYYPQKPLATTR------------------------------- 29

Query: 62  VILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRS 121
                         SME+L+FRELPAG N+IVAI CY+GYNQ DSVI+N S+++RG FRS
Sbjct: 30  --------------SMEFLKFRELPAGQNAIVAIACYSGYNQXDSVIMNQSSIDRGLFRS 75

Query: 122 VFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           +F+R+Y D E KRIG +  EQFEKP R     +++  YDKLDDDGIIAPG+RVSG+D++I
Sbjct: 76  LFYRAYTDQE-KRIGMNVVEQFEKPFRADTLKLKHGTYDKLDDDGIIAPGVRVSGEDIII 134

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +  + +EL   TK   KRD ST LR++E GIVDQV++T N +G +F K+R+R+ +
Sbjct: 135 GKTAPIAPDSEELGQRTKAHVKRDASTPLRSTENGIVDQVLITTNAEGLRFVKVRMRTTK 194

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 195 IPQIGDKFASRHGQKGTIGITYRQEDMPFTRQGIVPDLIINPHAIPSRMTIAHLIECQLS 254

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            VS+ +G  GDATPF + V V  +S LL+ +GYQ RG E+M++GHTGRK+ AQVF GPTY
Sbjct: 255 KVSTLRGLEGDATPFTE-VTVDSVSKLLRAHGYQSRGFEIMYHGHTGRKLRAQVFFGPTY 313

Query: 325 YQRLKHMVD 333
           YQRL+HMVD
Sbjct: 314 YQRLRHMVD 322


>gi|379773375|gb|AFD18893.1| RNA polymerase II second largest subunit, partial [Pleurotus
           eryngii]
          Length = 687

 Score =  341 bits (874), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 179/366 (48%), Positives = 228/366 (62%), Gaps = 82/366 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+++TNF +RMDT+A++LYYP KPL TTR                              
Sbjct: 368 MGIFLTNFLIRMDTMANILYYPQKPLATTR------------------------------ 397

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+V+RG FR
Sbjct: 398 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSVDRGLFR 442

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP+R     M++  YDKL++DG+IAPG  V G+D++I
Sbjct: 443 SMYYRSYMDLEKKSGIQQLEEFEKPSRDNTLRMKHGTYDKLENDGLIAPGTGVVGEDIII 502

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E GIVDQV++T N +G KF KIRVRS R
Sbjct: 503 GKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVDQVLITTNHEGQKFVKIRVRSTR 562

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 563 IPQIGDKFASRHGQKGTIGITYRQEDMPFTCEGIVPDIIINPHAIPSRMTIGHLVECLLS 622

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D + V+ +S  L++ GYQ RG EVM++GHTGRK+ AQV+LGPTY
Sbjct: 623 KVATLIGNEGDATPFTD-LTVESVSAFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTY 681

Query: 325 YQRLKH 330
           YQRLKH
Sbjct: 682 YQRLKH 687


>gi|297528107|gb|ADI46098.1| DNA-dependent RNA polymerase II [Morchella sp. Mes-8]
 gi|297528109|gb|ADI46099.1| DNA-dependent RNA polymerase II [Morchella sp. Mes-17]
 gi|297528149|gb|ADI46119.1| DNA-dependent RNA polymerase II [Morchella sp. Mes-17]
 gi|297528151|gb|ADI46120.1| DNA-dependent RNA polymerase II [Morchella sp. Mes-17]
          Length = 318

 Score =  341 bits (874), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 184/365 (50%), Positives = 230/365 (63%), Gaps = 84/365 (23%)

Query: 3   VYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSV 62
           V++TNF  RMDT+A++LYYP KPL TTR                                
Sbjct: 1   VFLTNFSERMDTMANILYYPQKPLATTR-------------------------------- 28

Query: 63  ILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSV 122
                        SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FRS+
Sbjct: 29  -------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSL 75

Query: 123 FFRSYKDAESKRIGDQ-EEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIG 181
           F+RSY D E KRIG Q  E+FEKP R     +++  YDKLD+DG++APG+RVSG+D++IG
Sbjct: 76  FYRSYMDQE-KRIGMQVVEEFEKPTRANTLKLKHGTYDKLDEDGLVAPGVRVSGEDIIIG 134

Query: 182 KTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRI 241
           KT  +  + DE+    K  +KRD ST LR++E GIVDQVMLT N +G KF K+R+R+ ++
Sbjct: 135 KTAPITPDVDEMGQRQKYHTKRDVSTPLRSTENGIVDQVMLTTNAEGLKFVKVRMRTTKV 194

Query: 242 PQIGDKFASRHGQKGTCGIQYRQE------------------------------------ 265
           PQIGDKFASRHGQKGT GI YRQE                                    
Sbjct: 195 PQIGDKFASRHGQKGTVGITYRQEDMPFTCEGIVPDLIINPHAIPSRMTIAHLIECQLSK 254

Query: 266 VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYY 325
           VSS +G  GDATPF D V V+ +STLL++ GYQ RG EVM+NG+TGRK+  QVFLGPTYY
Sbjct: 255 VSSLRGFEGDATPFTD-VTVESVSTLLRQNGYQSRGFEVMYNGYTGRKLVCQVFLGPTYY 313

Query: 326 QRLKH 330
           QRL+H
Sbjct: 314 QRLRH 318


>gi|354992145|gb|AER45779.1| RNA polymerase II second largest subunit [Pleurotus ostreatus]
          Length = 687

 Score =  341 bits (874), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 179/366 (48%), Positives = 228/366 (62%), Gaps = 82/366 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+++TNF +RMDT+A++LYYP KPL TTR                              
Sbjct: 368 MGIFLTNFLIRMDTMANILYYPQKPLATTR------------------------------ 397

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+V+RG FR
Sbjct: 398 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSVDRGLFR 442

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP+R     M++  YDKL++DG+IAPG  V G+D++I
Sbjct: 443 SMYYRSYMDLEKKSGIQQLEEFEKPSRDNTLRMKHGTYDKLENDGLIAPGTGVVGEDIII 502

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E GIVDQV++T N +G KF KIRVRS R
Sbjct: 503 GKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVDQVLITTNHEGQKFVKIRVRSTR 562

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 563 IPQIGDKFASRHGQKGTIGITYRQEDMPFTCEGIVPDIIINPHAIPSRMTIGHLVECLLS 622

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D + V+ +S  L++ GYQ RG EVM++GHTGRK+ AQV+LGPTY
Sbjct: 623 KVATLIGNEGDATPFTD-LTVESVSAFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTY 681

Query: 325 YQRLKH 330
           YQRLKH
Sbjct: 682 YQRLKH 687


>gi|123979366|gb|ABM81508.1| RNA polymerase II second largest subunit [Pyxine sorediata]
          Length = 704

 Score =  341 bits (874), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 181/365 (49%), Positives = 227/365 (62%), Gaps = 82/365 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TNF  RM+T++H+LYYP KPL TTR                              
Sbjct: 386 MGVFLTNFDQRMETMSHILYYPQKPLATTR------------------------------ 415

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 416 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 460

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+F+RSY D E K      EQFEKP R     +++  Y+KLDDDGII PG RVSG+D++I
Sbjct: 461 SLFYRSYTDQEKKIGMYTMEQFEKPLRSDTLKLKHGTYEKLDDDGIIIPGARVSGEDIII 520

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +  + +EL   TK  +KRD ST LR++E+G+VDQV+LT+N +G +F K+R+R+ +
Sbjct: 521 GKTAPIAPDAEELGQRTKLHNKRDASTPLRSTESGLVDQVLLTVNSEGLRFVKVRMRTTK 580

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 581 IPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLS 640

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            VSS +G  GDATPF D V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPTY
Sbjct: 641 KVSSLRGYEGDATPFTD-VTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTY 699

Query: 325 YQRLK 329
           YQRL+
Sbjct: 700 YQRLR 704


>gi|46277287|gb|AAS86834.1| RNA polymerase II second largest subunit, partial [Camellia
           japonica]
          Length = 559

 Score =  341 bits (874), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 180/364 (49%), Positives = 225/364 (61%), Gaps = 84/364 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+  RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 244 MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA----------------------------- 274

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 275 ----------------MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 318

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY+D E K     +E F  P+R    GMR+  YDKLDDDG+  PG RVSG+DV+I
Sbjct: 319 SLFFRSYRDEEKKMGTLVKEDFGCPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 378

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT   P  +++ +G   R++KRD ST LR+SETG+VDQV+LT N DG +F K+RVRSVR
Sbjct: 379 GKTT--PIAQEDAQGPAARYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVR 436

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 437 IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTMEGITPDIIVYPHAIPSRMTIGQLIECIMG 496

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGR++ A +FLGPTY
Sbjct: 497 KVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLPAMIFLGPTY 555

Query: 325 YQRL 328
           YQRL
Sbjct: 556 YQRL 559


>gi|354992143|gb|AER45778.1| RNA polymerase II second largest subunit [Pleurotus ostreatus]
          Length = 687

 Score =  341 bits (874), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 179/366 (48%), Positives = 228/366 (62%), Gaps = 82/366 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+++TNF +RMDT+A++LYYP KPL TTR                              
Sbjct: 368 MGIFLTNFLIRMDTMANILYYPQKPLATTR------------------------------ 397

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+V+RG FR
Sbjct: 398 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSVDRGLFR 442

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP+R     M++  YDKL++DG+IAPG  V G+D++I
Sbjct: 443 SMYYRSYMDLEKKSGIQQLEEFEKPSRDNTLRMKHGTYDKLENDGLIAPGTGVVGEDIII 502

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E GIVDQV++T N +G KF KIRVRS R
Sbjct: 503 GKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVDQVLITTNHEGQKFVKIRVRSTR 562

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 563 IPQIGDKFASRHGQKGTIGITYRQEDMPFTCEGIVPDIIINPHAIPSRMTIGHLVECLLS 622

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D + V+ +S  L++ GYQ RG EVM++GHTGRK+ AQV+LGPTY
Sbjct: 623 KVATLIGNEGDATPFTD-LTVESVSAFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTY 681

Query: 325 YQRLKH 330
           YQRLKH
Sbjct: 682 YQRLKH 687


>gi|56694338|gb|AAW22909.1| RNA polymerase II second largest subunit [Podocarpus coriaceus]
          Length = 514

 Score =  341 bits (874), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 181/365 (49%), Positives = 231/365 (63%), Gaps = 86/365 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG Y+TN+ +RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 199 MGXYVTNYQLRMDTLAYVLYYPQKPLVTTRA----------------------------- 229

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 230 ----------------MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 273

Query: 121 SVFFRSYKDAESKRIGDQ-EEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+FFRSY+D E KR+G   +E+F +PNR+   GMR+  YDKLDDDG+  PG RVSG+DV+
Sbjct: 274 SLFFRSYRD-EEKRMGTLVKEEFGRPNRENTTGMRHGSYDKLDDDGLAPPGTRVSGEDVI 332

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT   P +++E      ++++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RSV
Sbjct: 333 IGKTT--PVSQEESGNQISKYTRRDQSTSLRHSESGMVDQVLLTTNQDGLRFVKVRMRSV 390

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           RIPQIGDKF+SRHGQKGT G+ Y QE                                  
Sbjct: 391 RIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIM 450

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGRK+NA +FLGPT
Sbjct: 451 GKVAAHMGKEGDATPFTD-VTVDSISKALHKCGYQMRGFETMYNGHTGRKLNAMIFLGPT 509

Query: 324 YYQRL 328
           YYQRL
Sbjct: 510 YYQRL 514


>gi|94410942|gb|ABF18589.1| RNA polymerase II second largest subunit, partial [Inocybe mutata]
          Length = 563

 Score =  341 bits (874), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 178/364 (48%), Positives = 226/364 (62%), Gaps = 82/364 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF +RMDT+A++LYYP KPL TTR                              
Sbjct: 246 MGIYLTNFLIRMDTMANILYYPQKPLATTR------------------------------ 275

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 276 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 320

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP R T   M++  YDKL+DDG IAPG  V G+D++I
Sbjct: 321 SIYYRSYMDLEKKSGVQQLEEFEKPTRDTTLRMKHGTYDKLEDDGFIAPGTGVCGEDIII 380

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E G VDQV++T N +G KF K+RVRS+R
Sbjct: 381 GKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTEKGTVDQVLITTNSEGQKFVKVRVRSIR 440

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 441 IPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDLIINPHAIPSRMTIGHLVECLLS 500

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D + V+ +ST L++ GYQ RG EVM++GHTGRK+ AQV+LGPTY
Sbjct: 501 KVATLIGNEGDATPFTD-LTVESVSTFLRQRGYQSRGLEVMYHGHTGRKLQAQVYLGPTY 559

Query: 325 YQRL 328
           YQRL
Sbjct: 560 YQRL 563


>gi|354992137|gb|AER45775.1| RNA polymerase II second largest subunit [Pleurotus ostreatus]
          Length = 687

 Score =  341 bits (874), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 179/366 (48%), Positives = 228/366 (62%), Gaps = 82/366 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+++TNF +RMDT+A++LYYP KPL TTR                              
Sbjct: 368 MGIFLTNFLIRMDTMANILYYPQKPLATTR------------------------------ 397

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+V+RG FR
Sbjct: 398 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSVDRGLFR 442

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP+R     M++  YDKL++DG+IAPG  V G+D++I
Sbjct: 443 SMYYRSYMDLEKKSGIQQLEEFEKPSRDNTLRMKHGTYDKLENDGLIAPGTGVVGEDIII 502

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E GIVDQV++T N +G KF KIRVRS R
Sbjct: 503 GKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVDQVLITTNHEGQKFVKIRVRSTR 562

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 563 IPQIGDKFASRHGQKGTIGITYRQEDMPFTCEGIVPDIIINPHAIPSRMTIGHLVECLLS 622

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D + V+ +S  L++ GYQ RG EVM++GHTGRK+ AQV+LGPTY
Sbjct: 623 KVATLIGNEGDATPFTD-LTVESVSAFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTY 681

Query: 325 YQRLKH 330
           YQRLKH
Sbjct: 682 YQRLKH 687


>gi|354992115|gb|AER45764.1| RNA polymerase II second largest subunit [Pleurotus ostreatus]
          Length = 687

 Score =  341 bits (874), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 179/366 (48%), Positives = 228/366 (62%), Gaps = 82/366 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+++TNF +RMDT+A++LYYP KPL TTR                              
Sbjct: 368 MGIFLTNFLIRMDTMANILYYPQKPLATTR------------------------------ 397

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+V+RG FR
Sbjct: 398 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSVDRGLFR 442

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP+R     M++  YDKL++DG+IAPG  V G+D++I
Sbjct: 443 SMYYRSYMDLEKKSGIQQLEEFEKPSRDNTLRMKHGTYDKLENDGLIAPGTGVVGEDIII 502

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E GIVDQV++T N +G KF KIRVRS R
Sbjct: 503 GKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVDQVLITTNHEGQKFVKIRVRSTR 562

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 563 IPQIGDKFASRHGQKGTIGITYRQEDMPFTCEGIVPDIIINPHAIPSRMTIGHLVECLLS 622

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D + V+ +S  L++ GYQ RG EVM++GHTGRK+ AQV+LGPTY
Sbjct: 623 KVATLIGNEGDATPFTD-LTVESVSAFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTY 681

Query: 325 YQRLKH 330
           YQRLKH
Sbjct: 682 YQRLKH 687


>gi|354992109|gb|AER45761.1| RNA polymerase II second largest subunit [Pleurotus ostreatus]
          Length = 687

 Score =  341 bits (874), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 179/366 (48%), Positives = 228/366 (62%), Gaps = 82/366 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+++TNF +RMDT+A++LYYP KPL TTR                              
Sbjct: 368 MGIFLTNFLIRMDTMANILYYPQKPLATTR------------------------------ 397

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+V+RG FR
Sbjct: 398 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSVDRGLFR 442

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP+R     M++  YDKL++DG+IAPG  V G+D++I
Sbjct: 443 SMYYRSYMDLEKKSGIQQLEEFEKPSRDNTLRMKHGTYDKLENDGLIAPGTGVVGEDIII 502

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E GIVDQV++T N +G KF KIRVRS R
Sbjct: 503 GKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVDQVLITTNHEGQKFVKIRVRSTR 562

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 563 IPQIGDKFASRHGQKGTIGITYRQEDMPFTCEGIVPDIIINPHAIPSRMTIGHLVECLLS 622

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D + V+ +S  L++ GYQ RG EVM++GHTGRK+ AQV+LGPTY
Sbjct: 623 KVATLIGNEGDATPFTD-LTVESVSAFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTY 681

Query: 325 YQRLKH 330
           YQRLKH
Sbjct: 682 YQRLKH 687


>gi|354992123|gb|AER45768.1| RNA polymerase II second largest subunit [Pleurotus ostreatus]
          Length = 687

 Score =  341 bits (874), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 179/366 (48%), Positives = 228/366 (62%), Gaps = 82/366 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+++TNF +RMDT+A++LYYP KPL TTR                              
Sbjct: 368 MGIFLTNFLIRMDTMANILYYPQKPLATTR------------------------------ 397

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+V+RG FR
Sbjct: 398 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSVDRGLFR 442

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP+R     M++  YDKL++DG+IAPG  V G+D++I
Sbjct: 443 SMYYRSYMDLEKKSGIQQLEEFEKPSRDNTLRMKHGTYDKLENDGLIAPGTGVVGEDIII 502

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E GIVDQV++T N +G KF KIRVRS R
Sbjct: 503 GKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVDQVLITTNHEGQKFVKIRVRSTR 562

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 563 IPQIGDKFASRHGQKGTIGITYRQEDMPFTCEGIVPDIIINPHAIPSRMTIGHLVECLLS 622

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D + V+ +S  L++ GYQ RG EVM++GHTGRK+ AQV+LGPTY
Sbjct: 623 KVATLIGNEGDATPFTD-LTVESVSAFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTY 681

Query: 325 YQRLKH 330
           YQRLKH
Sbjct: 682 YQRLKH 687


>gi|354992111|gb|AER45762.1| RNA polymerase II second largest subunit [Pleurotus ostreatus]
 gi|354992133|gb|AER45773.1| RNA polymerase II second largest subunit [Pleurotus ostreatus]
          Length = 687

 Score =  341 bits (874), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 179/366 (48%), Positives = 228/366 (62%), Gaps = 82/366 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+++TNF +RMDT+A++LYYP KPL TTR                              
Sbjct: 368 MGIFLTNFLIRMDTMANILYYPQKPLATTR------------------------------ 397

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+V+RG FR
Sbjct: 398 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSVDRGLFR 442

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP+R     M++  YDKL++DG+IAPG  V G+D++I
Sbjct: 443 SMYYRSYMDLEKKSGIQQLEEFEKPSRDNTLRMKHGTYDKLENDGLIAPGTGVVGEDIII 502

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E GIVDQV++T N +G KF KIRVRS R
Sbjct: 503 GKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVDQVLITTNHEGQKFVKIRVRSTR 562

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 563 IPQIGDKFASRHGQKGTIGITYRQEDMPFTCEGIVPDIIINPHAIPSRMTIGHLVECLLS 622

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D + V+ +S  L++ GYQ RG EVM++GHTGRK+ AQV+LGPTY
Sbjct: 623 KVATLIGNEGDATPFTD-LTVESVSAFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTY 681

Query: 325 YQRLKH 330
           YQRLKH
Sbjct: 682 YQRLKH 687


>gi|354992135|gb|AER45774.1| RNA polymerase II second largest subunit [Pleurotus ostreatus]
 gi|354992139|gb|AER45776.1| RNA polymerase II second largest subunit [Pleurotus ostreatus]
          Length = 687

 Score =  341 bits (874), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 179/366 (48%), Positives = 228/366 (62%), Gaps = 82/366 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+++TNF +RMDT+A++LYYP KPL TTR                              
Sbjct: 368 MGIFLTNFLIRMDTMANILYYPQKPLATTR------------------------------ 397

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+V+RG FR
Sbjct: 398 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSVDRGLFR 442

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP+R     M++  YDKL++DG+IAPG  V G+D++I
Sbjct: 443 SMYYRSYMDLEKKSGIQQLEEFEKPSRDNTLRMKHGTYDKLENDGLIAPGTGVVGEDIII 502

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E GIVDQV++T N +G KF KIRVRS R
Sbjct: 503 GKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVDQVLITTNHEGQKFVKIRVRSTR 562

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 563 IPQIGDKFASRHGQKGTIGITYRQEDMPFTCEGIVPDIIINPHAIPSRMTIGHLVECLLS 622

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D + V+ +S  L++ GYQ RG EVM++GHTGRK+ AQV+LGPTY
Sbjct: 623 KVATLIGNEGDATPFTD-LTVESVSAFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTY 681

Query: 325 YQRLKH 330
           YQRLKH
Sbjct: 682 YQRLKH 687


>gi|297528055|gb|ADI46072.1| DNA-dependent RNA polymerase II [Morchella sp. Mel-25]
 gi|297528077|gb|ADI46083.1| DNA-dependent RNA polymerase II [Morchella sp. Mel-25]
 gi|297528139|gb|ADI46114.1| DNA-dependent RNA polymerase II [Morchella sp. Mel-25]
          Length = 318

 Score =  341 bits (874), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 184/365 (50%), Positives = 230/365 (63%), Gaps = 84/365 (23%)

Query: 3   VYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSV 62
           V++TNF  RMDT+A++LYYP KPL TTR                                
Sbjct: 1   VFLTNFAERMDTMANILYYPQKPLATTR-------------------------------- 28

Query: 63  ILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSV 122
                        SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FRS+
Sbjct: 29  -------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSL 75

Query: 123 FFRSYKDAESKRIGDQ-EEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIG 181
           F+RSY D E KRIG Q  E+FEKP R     +++  YDKLD+DG++APG+RVSG+D++IG
Sbjct: 76  FYRSYMDQE-KRIGMQVVEEFEKPTRANTLKLKHGTYDKLDEDGLVAPGVRVSGEDIIIG 134

Query: 182 KTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRI 241
           KT  +  + DE+    K  +KRD ST LR++E GIVDQVMLT N +G KF K+R+R+ ++
Sbjct: 135 KTAPIAPDVDEMGQRQKFHTKRDVSTPLRSTENGIVDQVMLTTNAEGLKFVKVRMRTTKV 194

Query: 242 PQIGDKFASRHGQKGTCGIQYRQE------------------------------------ 265
           PQIGDKFASRHGQKGT GI YRQE                                    
Sbjct: 195 PQIGDKFASRHGQKGTVGITYRQEDMPFTCEGIVPDLIINPHAIPSRMTIAHLIECQLSK 254

Query: 266 VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYY 325
           VSS +G  GDATPF D V V+ +STLL++ GYQ RG EVM+NG+TGRK+  QVFLGPTYY
Sbjct: 255 VSSLRGFEGDATPFTD-VTVESVSTLLRQNGYQSRGFEVMYNGYTGRKLVCQVFLGPTYY 313

Query: 326 QRLKH 330
           QRL+H
Sbjct: 314 QRLRH 318


>gi|354992127|gb|AER45770.1| RNA polymerase II second largest subunit [Pleurotus ostreatus]
          Length = 687

 Score =  341 bits (874), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 179/366 (48%), Positives = 228/366 (62%), Gaps = 82/366 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+++TNF +RMDT+A++LYYP KPL TTR                              
Sbjct: 368 MGIFLTNFLIRMDTMANILYYPQKPLATTR------------------------------ 397

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+V+RG FR
Sbjct: 398 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSVDRGLFR 442

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP+R     M++  YDKL++DG+IAPG  V G+D++I
Sbjct: 443 SMYYRSYMDLEKKSGIQQLEEFEKPSRDNTLRMKHGTYDKLENDGLIAPGTGVVGEDIII 502

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E GIVDQV++T N +G KF KIRVRS R
Sbjct: 503 GKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVDQVLITTNHEGQKFVKIRVRSTR 562

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 563 IPQIGDKFASRHGQKGTIGITYRQEDMPFTCEGIVPDIIINPHAIPSRMTIGHLVECLLS 622

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D + V+ +S  L++ GYQ RG EVM++GHTGRK+ AQV+LGPTY
Sbjct: 623 KVATLIGNEGDATPFTD-LTVESVSAFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTY 681

Query: 325 YQRLKH 330
           YQRLKH
Sbjct: 682 YQRLKH 687


>gi|354992129|gb|AER45771.1| RNA polymerase II second largest subunit [Pleurotus ostreatus]
          Length = 687

 Score =  341 bits (874), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 179/366 (48%), Positives = 228/366 (62%), Gaps = 82/366 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+++TNF +RMDT+A++LYYP KPL TTR                              
Sbjct: 368 MGIFLTNFLIRMDTMANILYYPQKPLATTR------------------------------ 397

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+V+RG FR
Sbjct: 398 ---------------SMEYLKFRELPAGHNAIVAILCYSGYNQEDSVIMNQSSVDRGLFR 442

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP+R     M++  YDKL++DG+IAPG  V G+D++I
Sbjct: 443 SMYYRSYMDLEKKSGIQQLEEFEKPSRDNTLRMKHGTYDKLENDGLIAPGTGVVGEDIII 502

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E GIVDQV++T N +G KF KIRVRS R
Sbjct: 503 GKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVDQVLITTNHEGQKFVKIRVRSTR 562

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 563 IPQIGDKFASRHGQKGTIGITYRQEDMPFTCEGIVPDIIINPHAIPSRMTIGHLVECLLS 622

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D + V+ +S  L++ GYQ RG EVM++GHTGRK+ AQV+LGPTY
Sbjct: 623 KVATLIGNEGDATPFTD-LTVESVSAFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTY 681

Query: 325 YQRLKH 330
           YQRLKH
Sbjct: 682 YQRLKH 687


>gi|354992125|gb|AER45769.1| RNA polymerase II second largest subunit [Pleurotus ostreatus]
          Length = 687

 Score =  341 bits (874), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 179/366 (48%), Positives = 228/366 (62%), Gaps = 82/366 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+++TNF +RMDT+A++LYYP KPL TTR                              
Sbjct: 368 MGIFLTNFLIRMDTMANILYYPQKPLATTR------------------------------ 397

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+V+RG FR
Sbjct: 398 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSVDRGLFR 442

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP+R     M++  YDKL++DG+IAPG  V G+D++I
Sbjct: 443 SMYYRSYMDLEKKSGIQQLEEFEKPSRDNTLRMKHGTYDKLENDGLIAPGTGVVGEDIII 502

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E GIVDQV++T N +G KF KIRVRS R
Sbjct: 503 GKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVDQVLITTNHEGQKFIKIRVRSTR 562

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 563 IPQIGDKFASRHGQKGTIGITYRQEDMPFTREGIVPDIIINPHAIPSRMTIGHLVECLLS 622

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D + V+ +S  L++ GYQ RG EVM++GHTGRK+ AQV+LGPTY
Sbjct: 623 KVATLIGNEGDATPFTD-LTVESVSAFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTY 681

Query: 325 YQRLKH 330
           YQRLKH
Sbjct: 682 YQRLKH 687


>gi|354992117|gb|AER45765.1| RNA polymerase II second largest subunit [Pleurotus ostreatus]
          Length = 687

 Score =  341 bits (874), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 179/366 (48%), Positives = 228/366 (62%), Gaps = 82/366 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+++TNF +RMDT+A++LYYP KPL TTR                              
Sbjct: 368 MGIFLTNFLIRMDTMANILYYPQKPLATTR------------------------------ 397

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+V+RG FR
Sbjct: 398 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSVDRGLFR 442

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP+R     M++  YDKL++DG+IAPG  V G+D++I
Sbjct: 443 SMYYRSYMDLEKKSGIQQLEEFEKPSRDNTLRMKHGTYDKLENDGLIAPGTGVVGEDIII 502

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E GIVDQV++T N +G KF KIRVRS R
Sbjct: 503 GKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVDQVLITTNHEGQKFVKIRVRSTR 562

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 563 IPQIGDKFASRHGQKGTIGITYRQEDMPFTCEGIVPDIIINPHAIPSRMTIGHLVECLLS 622

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D + V+ +S  L++ GYQ RG EVM++GHTGRK+ AQV+LGPTY
Sbjct: 623 KVATLIGNEGDATPFTD-LTVESVSAFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTY 681

Query: 325 YQRLKH 330
           YQRLKH
Sbjct: 682 YQRLKH 687


>gi|386801236|gb|AFJ39282.1| RNA polymerase II second largest subunit, partial [Pleurotus
           pulmonarius]
          Length = 687

 Score =  341 bits (874), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 179/366 (48%), Positives = 228/366 (62%), Gaps = 82/366 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+++TNF +RMDT+A++LYYP KPL TTR                              
Sbjct: 368 MGIFLTNFLIRMDTMANILYYPQKPLATTR------------------------------ 397

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+V+RG FR
Sbjct: 398 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSVDRGLFR 442

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP+R     M++  YDKL++DG+IAPG  V G+D++I
Sbjct: 443 SMYYRSYMDLEKKSGIQQLEEFEKPSRDNTLRMKHGTYDKLENDGLIAPGTGVVGEDIII 502

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E GIVDQV++T N +G KF KIRVRS R
Sbjct: 503 GKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVDQVLITTNHEGQKFVKIRVRSTR 562

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 563 IPQIGDKFASRHGQKGTIGITYRQEDMPFTCEGIVPDIIINPHAIPSRMTIGHLVECLLS 622

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D + V+ +S  L++ GYQ RG EVM++GHTGRK+ AQV+LGPTY
Sbjct: 623 KVATLIGNEGDATPFTD-LTVESVSAFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTY 681

Query: 325 YQRLKH 330
           YQRLKH
Sbjct: 682 YQRLKH 687


>gi|354992121|gb|AER45767.1| RNA polymerase II second largest subunit [Pleurotus ostreatus]
          Length = 687

 Score =  340 bits (873), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 179/366 (48%), Positives = 228/366 (62%), Gaps = 82/366 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+++TNF +RMDT+A++LYYP KPL TTR                              
Sbjct: 368 MGIFLTNFLIRMDTMANILYYPQKPLATTR------------------------------ 397

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+V+RG FR
Sbjct: 398 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSVDRGLFR 442

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP+R     M++  YDKL++DG+IAPG  V G+D++I
Sbjct: 443 SMYYRSYMDLEKKSGIQQLEEFEKPSRDNTLRMKHGTYDKLENDGLIAPGTGVVGEDIII 502

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E GIVDQV++T N +G KF KIRVRS R
Sbjct: 503 GKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVDQVLITTNHEGQKFVKIRVRSTR 562

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 563 IPQIGDKFASRHGQKGTIGITYRQEDMPFTCEGIVPDIIINPHAIPSRMTIGHLVECLLS 622

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D + V+ +S  L++ GYQ RG EVM++GHTGRK+ AQV+LGPTY
Sbjct: 623 KVATLIGNEGDATPFTD-LTVESVSAFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTY 681

Query: 325 YQRLKH 330
           YQRLKH
Sbjct: 682 YQRLKH 687


>gi|300394718|gb|ADK11897.1| DNA-directed RNA polymerase II subunit two, partial [Leucogyrophana
           arizonica]
          Length = 405

 Score =  340 bits (873), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 178/362 (49%), Positives = 226/362 (62%), Gaps = 82/362 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF VRMDT+A++LYYP KPL TTR                              
Sbjct: 90  MGIYLTNFLVRMDTMANILYYPQKPLATTR------------------------------ 119

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+V+RG FR
Sbjct: 120 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSVDRGLFR 164

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP R T   M++  YDK++DDG+IAPG  VSG+D++I
Sbjct: 165 SIYYRSYMDLEKKSGIQQLEEFEKPTRDTTLRMKHGTYDKIEDDGLIAPGTGVSGEDIII 224

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E GIVDQV++T N +G KF K+RVRS R
Sbjct: 225 GKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTR 284

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 285 IPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLS 344

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D + V+ +ST L++ GYQ RG EVM++GHTGRK+ AQ++LGPTY
Sbjct: 345 KVATLIGNEGDATPFTD-LTVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQAQIYLGPTY 403

Query: 325 YQ 326
           YQ
Sbjct: 404 YQ 405


>gi|45545353|gb|AAS67524.1| DNA-dependent RNA polymerase II second largest subunit, partial
           [Usnea cornuta]
          Length = 903

 Score =  340 bits (873), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 182/367 (49%), Positives = 229/367 (62%), Gaps = 84/367 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 584 MGVFLTNYQQRMDTMANILYYPQKPLATTR------------------------------ 613

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 614 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 658

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+R+Y D E KRIG    EQFEKP R     +++  YDKLDDDG++APG+RVSG+D++
Sbjct: 659 SLFYRAYTDQE-KRIGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGLVAPGVRVSGEDII 717

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK   KRD ST LR++E GIVDQV+L+ N +G +F K+R+R+ 
Sbjct: 718 IGKTAPIAPDAEELGQRTKLHVKRDTSTPLRSTENGIVDQVLLSTNAEGLRFVKVRMRTT 777

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 778 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGMVPDLIINPHAIPSRMTIAHLIECLL 837

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+  QVFLGPT
Sbjct: 838 SKVSSLRGFEGDATPFTE-VTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVTQVFLGPT 896

Query: 324 YYQRLKH 330
           YYQRL+H
Sbjct: 897 YYQRLRH 903


>gi|120561269|gb|ABM27019.1| RNA polymerase II second largest subunit, partial [Chytriomyces
           hyalinus]
          Length = 883

 Score =  340 bits (873), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 173/366 (47%), Positives = 225/366 (61%), Gaps = 82/366 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+++T+F  RMD   ++L+YP KPL  TR                              
Sbjct: 564 MGIFLTSFQYRMDQTMNILFYPQKPLACTR------------------------------ 593

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYLRFRELPAG N+IV I CY+GYNQEDS+I+N S++++G FR
Sbjct: 594 ---------------SMEYLRFRELPAGQNAIVCICCYSGYNQEDSLIMNQSSIDKGLFR 638

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S++F+ Y D E K    Q E  EKP R+    MR   YDKLD DG+++PG+RVSGDD++I
Sbjct: 639 SLYFKVYIDTEKKEGMTQLETIEKPMRENTLRMRQGSYDKLDVDGLVSPGVRVSGDDILI 698

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT+ LP++ +E+   T   +KRD ST L+++E GI+DQVM+T N DGYKF K+R+RS+R
Sbjct: 699 GKTVPLPKDSEEMGQRTSGHTKRDDSTPLKSTEAGIIDQVMVTTNADGYKFVKVRMRSIR 758

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           +PQIGDKFASRHGQKGTCGI YR E                                   
Sbjct: 759 VPQIGDKFASRHGQKGTCGITYRNEDMPFTRDGITPDIIINPHAIPSRMTIGHLVECLLG 818

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V+++ G  GDATPF D VNV++IS  L+ +G+Q RG EV+FNGHTG+K+NAQV+ GPTY
Sbjct: 819 KVATHTGHEGDATPFTD-VNVEEISRELEAFGFQKRGFEVLFNGHTGKKLNAQVYTGPTY 877

Query: 325 YQRLKH 330
           YQRLKH
Sbjct: 878 YQRLKH 883


>gi|354992107|gb|AER45760.1| RNA polymerase II second largest subunit [Pleurotus ostreatus]
          Length = 687

 Score =  340 bits (873), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 179/366 (48%), Positives = 228/366 (62%), Gaps = 82/366 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+++TNF +RMDT+A++LYYP KPL TTR                              
Sbjct: 368 MGIFLTNFLIRMDTMANILYYPQKPLATTR------------------------------ 397

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+V+RG FR
Sbjct: 398 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSVDRGLFR 442

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP+R     M++  YDKL++DG+IAPG  V G+D++I
Sbjct: 443 SMYYRSYMDLEKKSGIQQLEEFEKPSRDNTLRMKHGTYDKLENDGLIAPGTGVVGEDIII 502

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E GIVDQV++T N +G KF KIRVRS R
Sbjct: 503 GKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVDQVLITTNHEGQKFVKIRVRSTR 562

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 563 IPQIGDKFASRHGQKGTIGITYRQEDMPFTCEGIVPDIIINPHAIPSRMTIGHLVECLLS 622

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D + V+ +S  L++ GYQ RG EVM++GHTGRK+ AQV+LGPTY
Sbjct: 623 KVATLIGNEGDATPFTD-LTVESVSAFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTY 681

Query: 325 YQRLKH 330
           YQRLKH
Sbjct: 682 YQRLKH 687


>gi|120561271|gb|ABM27020.1| RNA polymerase II second largest subunit, partial [Chytriomyces
           hyalinus]
          Length = 883

 Score =  340 bits (873), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 173/366 (47%), Positives = 225/366 (61%), Gaps = 82/366 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+++T+F  RMD   ++L+YP KPL  TR                              
Sbjct: 564 MGIFLTSFQYRMDQTMNILFYPQKPLACTR------------------------------ 593

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYLRFRELPAG N+IV I CY+GYNQEDS+I+N S++++G FR
Sbjct: 594 ---------------SMEYLRFRELPAGQNAIVCICCYSGYNQEDSLIMNQSSIDKGLFR 638

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S++F+ Y D E K    Q E  EKP R+    MR   YDKLD DG+++PG+RVSGDD++I
Sbjct: 639 SLYFKVYIDTEKKEGMTQLETIEKPMRENTLRMRQGSYDKLDVDGLVSPGVRVSGDDILI 698

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT+ LP++ +E+   T   +KRD ST L+++E GI+DQVM+T N DGYKF K+R+RS+R
Sbjct: 699 GKTVPLPKDSEEMGQRTSGHTKRDDSTPLKSTEAGIIDQVMVTTNADGYKFVKVRMRSIR 758

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           +PQIGDKFASRHGQKGTCGI YR E                                   
Sbjct: 759 VPQIGDKFASRHGQKGTCGITYRNEDMPFTRDGITPDIIINPHAIPSRMTIGHLVECLLG 818

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V+++ G  GDATPF D VNV++IS  L+ +G+Q RG EV+FNGHTG+K+NAQV+ GPTY
Sbjct: 819 KVATHTGHEGDATPFTD-VNVEEISRELEAFGFQKRGFEVLFNGHTGKKLNAQVYTGPTY 877

Query: 325 YQRLKH 330
           YQRLKH
Sbjct: 878 YQRLKH 883


>gi|82504133|gb|ABB80489.1| RNA polymerase II subunit [Symbiotaphrina buchneri]
          Length = 706

 Score =  340 bits (873), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 185/373 (49%), Positives = 231/373 (61%), Gaps = 84/373 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV+   F+ RMDT+A++LYYP KPL TTR                              
Sbjct: 381 MGVFXXXFNYRMDTMANILYYPQKPLATTR------------------------------ 410

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI  Y+GYNQEDSVI+N S+++RG FR
Sbjct: 411 ---------------SMEFLKFRELPAGQNAIVAIATYSGYNQEDSVIMNQSSIDRGLFR 455

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+RSY D E KR+G    EQFEKP R     +++  YDKLD+DG++APG+RV+G+D++
Sbjct: 456 SLFYRSYTDQE-KRVGMSVVEQFEKPTRADTLKLKHGTYDKLDEDGLVAPGVRVNGEDMI 514

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK   KRD ST LR +E+GIVDQV+LT N +G +F K+R+R+ 
Sbjct: 515 IGKTAPIAPDAEELGQRTKLHIKRDVSTPLRTTESGIVDQVLLTTNAEGLRFVKVRMRTT 574

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 575 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECLL 634

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF D V V  +S LL++ GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 635 SKVSSLRGFEGDATPFTD-VTVDGVSRLLRDNGYQSRGFEVMYNGHTGRKLVAQVFLGPT 693

Query: 324 YYQRLKHMVDDKI 336
           YYQRL+HMVD KI
Sbjct: 694 YYQRLRHMVDXKI 706


>gi|103001177|gb|ABF71496.1| DNA-dependent RNA polymerase II second largest subunit [Acarospora
           molybdina]
          Length = 709

 Score =  340 bits (873), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 186/373 (49%), Positives = 228/373 (61%), Gaps = 84/373 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG         MDT+A++LYYP KPL TTR                              
Sbjct: 382 MGXXXXXXXXXMDTMANILYYPQKPLATTR------------------------------ 411

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 412 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 456

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+RSY D E KR+G    EQFEKP R     +++  YDKLDDDGI+APG+RVSG+D++
Sbjct: 457 SLFYRSYTDQE-KRVGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDII 515

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK   KRD ST LR++E GIVDQV++T N +G KF K+R+R+ 
Sbjct: 516 IGKTAPISPDAEELGQRTKLHVKRDCSTPLRSTENGIVDQVLITTNAEGLKFVKVRMRTT 575

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 576 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTKDGVVPDLIINPHAIPSRMTIAHLIECQL 635

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 636 SKVSSLRGFEGDATPFTE-VTVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 694

Query: 324 YYQRLKHMVDDKI 336
           YYQRL+HMVD KI
Sbjct: 695 YYQRLRHMVDXKI 707


>gi|45545331|gb|AAS67513.1| DNA-dependent RNA polymerase II second largest subunit, partial
           [Hydnum repandum]
          Length = 887

 Score =  340 bits (872), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 177/366 (48%), Positives = 227/366 (62%), Gaps = 82/366 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+ VRMDT+A++LYYP KPL TTR                              
Sbjct: 568 MGIYLTNYQVRMDTMANILYYPQKPLATTR------------------------------ 597

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYLRFRELPAG N+ VAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 598 ---------------SMEYLRFRELPAGQNATVAILCYSGYNQEDSVIMNQSSIDRGLFR 642

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY DAE K      E+FEKP R T   M++  Y+KL+DDG+IAPG  V+G+D++I
Sbjct: 643 SMYYRSYTDAEKKVGVLPLEEFEKPTRDTTLRMKHGTYEKLEDDGLIAPGTGVAGEDIII 702

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  LP + +EL    +  ++RD ST L+++E GIVDQV++T N DG KF KIR+RS R
Sbjct: 703 GKTAPLPPDSEELGQRMRTHTRRDVSTPLKSTENGIVDQVLVTTNQDGLKFVKIRIRSTR 762

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQ+GDKFASRHGQKGT GI YR E                                   
Sbjct: 763 IPQVGDKFASRHGQKGTVGITYRHEDMPFTAEGITPDIIINPHAIPSRMTIGHLIECLLS 822

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            +++  G  GDATPF + + V+ +S LL+E GYQ RG EVM++GH+GRK+ AQV+LGPTY
Sbjct: 823 KLATLIGNEGDATPFTE-LTVESVSQLLRENGYQSRGLEVMYHGHSGRKLQAQVYLGPTY 881

Query: 325 YQRLKH 330
           YQRLKH
Sbjct: 882 YQRLKH 887


>gi|156627827|gb|ABU88901.1| RNA polymerase II second largest subunit [Phymatotrichopsis
           omnivora]
 gi|156627829|gb|ABU88902.1| RNA polymerase II second largest subunit [Phymatotrichopsis
           omnivora]
 gi|156627831|gb|ABU88903.1| RNA polymerase II second largest subunit [Phymatotrichopsis
           omnivora]
 gi|156627833|gb|ABU88904.1| RNA polymerase II second largest subunit [Phymatotrichopsis
           omnivora]
          Length = 884

 Score =  340 bits (872), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 184/364 (50%), Positives = 227/364 (62%), Gaps = 84/364 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TNF  RMDT+A++LYYP KPL TTR                              
Sbjct: 568 MGVFLTNFAERMDTMANILYYPQKPLATTR------------------------------ 597

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 598 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 642

Query: 121 SVFFRSYKDAESKRIGDQ-EEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+RSY D E KRIG Q  E+FEKP R     +++  YDKLD+DG++APG+RVSG+D++
Sbjct: 643 SLFYRSYMDQE-KRIGMQIVEEFEKPMRSNTLKLKHGTYDKLDEDGLVAPGVRVSGEDII 701

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + DE+    K  +KRD ST LR++E GIVDQVMLT N +G KF K+R+R+ 
Sbjct: 702 IGKTAPIAPDLDEMGQRQKYHTKRDVSTPLRSTENGIVDQVMLTTNAEGLKFVKVRMRTT 761

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           ++PQIGDKFASRHGQKGT GI YR E                                  
Sbjct: 762 KVPQIGDKFASRHGQKGTIGITYRMEDMPFTCEGIVPDLIINPHAIPSRMTIAHLIECQL 821

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF D V V  +S LL++ GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 822 SKVSSLRGYEGDATPFTD-VTVDSVSQLLRQEGYQSRGFEVMYNGHTGRKLVAQVFLGPT 880

Query: 324 YYQR 327
           YYQR
Sbjct: 881 YYQR 884


>gi|56694302|gb|AAW22891.1| RNA polymerase II second largest subunit [Cryptogramma crispa]
          Length = 537

 Score =  340 bits (872), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 178/364 (48%), Positives = 227/364 (62%), Gaps = 84/364 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+ +RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 222 MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA----------------------------- 252

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN++VAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 253 ----------------MEHLHFRQLPAGINAVVAIACYSGYNQEDSVIMNQSSIDRGFFR 296

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+F+RSY+D E K+    +E+FE+P R+  QGMR+  YDK DDDG+  PG RVSG+DV+I
Sbjct: 297 SIFYRSYRDEEKKQGTLVKEEFERPIREHTQGMRHGSYDKXDDDGLAPPGTRVSGEDVII 356

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT   P  +D+     +R+SKRD ST LR+SE+G+VDQV+LT N DG +  KIRV S+R
Sbjct: 357 GKTT--PIAQDDTGTQAQRYSKRDQSTCLRHSESGMVDQVLLTTNADGLRXVKIRVXSIR 414

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 415 IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTQEGITPDIIVNPHAIPSRMTIGQLIECIMG 474

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V+++ G+ GDATPF D V V  IS  L + GYQ RG E M+NGHTGR++NA +FLGPTY
Sbjct: 475 KVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQXRGFETMYNGHTGRRLNAMIFLGPTY 533

Query: 325 YQRL 328
           YQRL
Sbjct: 534 YQRL 537


>gi|123979382|gb|ABM81516.1| RNA polymerase II second largest subunit [Parmeliella
           appalachensis]
          Length = 704

 Score =  340 bits (871), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 184/366 (50%), Positives = 229/366 (62%), Gaps = 84/366 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 386 MGVFLTNYDQRMDTMANILYYPQKPLATTR------------------------------ 415

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 416 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 460

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+RSY D E KRIG    EQFEKP +     +++  YDKLDDDGI+APG+RVSG+D++
Sbjct: 461 SLFYRSYTDQE-KRIGMSVVEQFEKPMKSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDII 519

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK   KRD ST LR++E GIVDQV+LT N +G +F K+R+R+ 
Sbjct: 520 IGKTAPIAPDAEELGQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTT 579

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 580 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQL 639

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 640 SKVSSLRGFEGDATPFTE-VTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 698

Query: 324 YYQRLK 329
           YYQRL+
Sbjct: 699 YYQRLR 704


>gi|46277328|gb|AAS86854.1| DNA-dependent RNA polymerase II [Peziza depressa]
          Length = 561

 Score =  339 bits (870), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 184/363 (50%), Positives = 229/363 (63%), Gaps = 84/363 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 246 MGVFLTNYRERMDTMANILYYPQKPLGTTR------------------------------ 275

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI+CY+GYNQEDSVI+N S+++RG FR
Sbjct: 276 ---------------SMEFLKFRELPAGQNAIVAIMCYSGYNQEDSVIMNQSSIDRGLFR 320

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+FFR+Y D E KRIG    E+FEKP R     +++  YDKLDDDG++APG+RVSG+D++
Sbjct: 321 SLFFRTYMDQE-KRIGMSVVEEFEKPTRGNTLRLKHGTYDKLDDDGLVAPGVRVSGEDII 379

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  N++EL   TK  +KRD ST LR++E GIVDQVM+T N +G KF K+R+R+ 
Sbjct: 380 IGKTAPIAPNQEELGQRTKFHTKRDVSTPLRSTENGIVDQVMVTTNQEGLKFVKVRMRTT 439

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YR E                                  
Sbjct: 440 KIPQIGDKFASRHGQKGTIGITYRNEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECLL 499

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF D V V  +STLL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 500 SKVSSLRGFEGDATPFTD-VTVDSVSTLLREHGYQSRGFEVMYNGHTGRKMVAQVFLGPT 558

Query: 324 YYQ 326
           YYQ
Sbjct: 559 YYQ 561


>gi|103001521|gb|ABF71511.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
           chlorophanum]
          Length = 692

 Score =  339 bits (870), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 184/364 (50%), Positives = 227/364 (62%), Gaps = 84/364 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 376 MGVFLTNYDQRMDTMANILYYPQKPLATTR------------------------------ 405

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 406 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 450

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+RSY D E KRIG    EQFEKP R     +++  YDKLDDDGI+APG+RVSG+D++
Sbjct: 451 SLFYRSYTDQE-KRIGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDII 509

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK   KRD ST LR++E GIVDQV+LT N +G +F K+R+R+ 
Sbjct: 510 IGKTAPIAPDAEELGQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTT 569

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 570 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTKEGIVPDLIINPHAIPSRMTIAHLIECQL 629

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 630 SKVSSLRGFEGDATPFTE-VTVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 688

Query: 324 YYQR 327
           YYQR
Sbjct: 689 YYQR 692


>gi|194320168|gb|ACF48310.1| DNA-dependent RNA polymerase II second largest subunit [Lecidella
           elaeochroma]
          Length = 317

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 182/364 (50%), Positives = 229/364 (62%), Gaps = 84/364 (23%)

Query: 3   VYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSV 62
           V++TNF  RMDT+A++LYYP +PL TTR                                
Sbjct: 1   VFLTNFDQRMDTMANILYYPQEPLATTR-------------------------------- 28

Query: 63  ILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSV 122
                        SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FRS+
Sbjct: 29  -------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSL 75

Query: 123 FFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIG 181
           F+R+Y D E KRIG +  EQFEKP R     +++  YDKLDDDGI+APG+RVSG+D++IG
Sbjct: 76  FYRAYTDQE-KRIGMNVLEQFEKPMRSETLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIG 134

Query: 182 KTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRI 241
           KT  +  + +EL   TK  +KRD ST LR++E GIVDQV+++ N DG +F K+R+R+ +I
Sbjct: 135 KTAPMAGDAEELGQRTKAHTKRDTSTPLRSTENGIVDQVLMSTNADGLRFVKVRMRTTKI 194

Query: 242 PQIGDKFASRHGQKGTCGIQYRQE------------------------------------ 265
           PQIGDKFASRHGQKGT GI YRQE                                    
Sbjct: 195 PQIGDKFASRHGQKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSK 254

Query: 266 VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYY 325
           VSS +G  GDATPF D V V  +S+LL+E GYQ RG EVM+NGHTGRK+ AQVFLGPTYY
Sbjct: 255 VSSLRGYEGDATPFTD-VTVDSVSSLLRENGYQSRGFEVMYNGHTGRKLVAQVFLGPTYY 313

Query: 326 QRLK 329
           QRL+
Sbjct: 314 QRLR 317


>gi|103001538|gb|ABF71512.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
           chlorophanum]
          Length = 692

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 184/364 (50%), Positives = 227/364 (62%), Gaps = 84/364 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 376 MGVFLTNYDQRMDTMANILYYPQKPLATTR------------------------------ 405

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 406 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 450

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+RSY D E KRIG    EQFEKP R     +++  YDKLDDDGI+APG+RVSG+D++
Sbjct: 451 SLFYRSYTDQE-KRIGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDII 509

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK   KRD ST LR++E GIVDQV+LT N +G +F K+R+R+ 
Sbjct: 510 IGKTAPIAPDAEELGQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTT 569

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 570 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTKEGIVPDLIINPHAIPSRMTIAHLIECQL 629

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 630 SKVSSLRGFEGDATPFTE-VTVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 688

Query: 324 YYQR 327
           YYQR
Sbjct: 689 YYQR 692


>gi|103001447|gb|ABF71508.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
           gobiense]
          Length = 692

 Score =  339 bits (869), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 184/364 (50%), Positives = 227/364 (62%), Gaps = 84/364 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 376 MGVFLTNYDQRMDTMANILYYPQKPLATTR------------------------------ 405

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 406 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 450

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+RSY D E KRIG    EQFEKP R     +++  YDKLDDDGI+APG+RVSG+D++
Sbjct: 451 SLFYRSYTDQE-KRIGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDII 509

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK   KRD ST LR++E GIVDQV+LT N +G +F K+R+R+ 
Sbjct: 510 IGKTAPIAPDAEELGQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTT 569

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 570 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTKEGIVPDLIINPHAIPSRMTIAHLIECQL 629

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 630 SKVSSLRGFEGDATPFTE-VTVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 688

Query: 324 YYQR 327
           YYQR
Sbjct: 689 YYQR 692


>gi|103001423|gb|ABF71507.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
           gobiense]
          Length = 693

 Score =  339 bits (869), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 184/364 (50%), Positives = 227/364 (62%), Gaps = 84/364 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 377 MGVFLTNYDQRMDTMANILYYPQKPLATTR------------------------------ 406

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 407 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 451

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+RSY D E KRIG    EQFEKP R     +++  YDKLDDDGI+APG+RVSG+D++
Sbjct: 452 SLFYRSYTDQE-KRIGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDII 510

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK   KRD ST LR++E GIVDQV+LT N +G +F K+R+R+ 
Sbjct: 511 IGKTAPIAPDAEELGQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTT 570

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 571 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTKEGIVPDLIINPHAIPSRMTIAHLIECQL 630

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 631 SKVSSLRGFEGDATPFTE-VTVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 689

Query: 324 YYQR 327
           YYQR
Sbjct: 690 YYQR 693


>gi|52699864|gb|AAU86993.1| DNA-dependent RNA polymerase II second largest subunit [Pyrenula
           pseudobufonia]
          Length = 707

 Score =  339 bits (869), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 178/371 (47%), Positives = 231/371 (62%), Gaps = 84/371 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TNF  RM+T+A++LYYP KPL TT S                             
Sbjct: 384 MGVFLTNFDQRMETMANILYYPQKPLATTSS----------------------------- 414

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+LRFRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 415 ----------------MEHLRFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 458

Query: 121 SVFFRSYKDAESKRIGDQE-EQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+R+Y+D E K++G Q  E+FEKP+R     ++   YDK+D+DGI+APG+RVSG+D++
Sbjct: 459 SLFYRTYQDQE-KQVGHQVLEKFEKPSRADTLRLKRGTYDKIDEDGIVAPGVRVSGEDII 517

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           +GKT  +  + +EL   TK   KRD S  LR++E+GIVDQV+LT   +G +F K+RVR+ 
Sbjct: 518 LGKTAPMAPDSEELGQRTKAHVKRDASVQLRSTESGIVDQVLLTTTNEGSRFAKVRVRTT 577

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 578 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTKDGVVPDLIINPHAIPSRMTIAHLIECQL 637

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             ++S  G  GDATPF   V V +IS  L+E+G+  RG EVM+NGHTGRK+ AQ+FLGPT
Sbjct: 638 SKLASLTGAEGDATPFT-TVTVSQISDRLREFGFHSRGFEVMYNGHTGRKLMAQIFLGPT 696

Query: 324 YYQRLKHMVDD 334
           YYQRL+HMVDD
Sbjct: 697 YYQRLRHMVDD 707


>gi|103001706|gb|ABF71518.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
           gobiense]
          Length = 695

 Score =  339 bits (869), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 184/364 (50%), Positives = 227/364 (62%), Gaps = 84/364 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 379 MGVFLTNYDQRMDTMANILYYPQKPLATTR------------------------------ 408

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 409 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 453

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+RSY D E KRIG    EQFEKP R     +++  YDKLDDDGI+APG+RVSG+D++
Sbjct: 454 SLFYRSYTDQE-KRIGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDII 512

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK   KRD ST LR++E GIVDQV+LT N +G +F K+R+R+ 
Sbjct: 513 IGKTAPIAPDAEELGQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTT 572

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 573 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTKEGIVPDLIINPHAIPSRMTIAHLIECQL 632

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 633 SKVSSLRGFEGDATPFTE-VTVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 691

Query: 324 YYQR 327
           YYQR
Sbjct: 692 YYQR 695


>gi|94410908|gb|ABF18575.1| RNA polymerase II second largest subunit, partial [Gloiocephala
           aquatica]
          Length = 685

 Score =  339 bits (869), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 174/364 (47%), Positives = 227/364 (62%), Gaps = 82/364 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+++TNF +RMDT+A++LYYP KPL TTR                              
Sbjct: 368 MGIFLTNFLIRMDTMANILYYPQKPLATTR------------------------------ 397

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 398 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 442

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K      E+FEKP R++   M++  YDKL+DDG+IAPG  V G+D++I
Sbjct: 443 SIYYRSYMDVEKKSGIQALEEFEKPQRESTLRMKHGTYDKLEDDGLIAPGTGVVGEDIII 502

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E+GI+DQV++T N DG KF K+RVR+ R
Sbjct: 503 GKTAPIPPDSEELGQRTRMHTRRDVSTPLKSTESGIIDQVLITTNSDGQKFVKVRVRATR 562

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQ GDKFASRHGQKGT GI YRQE                                   
Sbjct: 563 IPQTGDKFASRHGQKGTIGITYRQEDMPFTSEGIVPDIIINPHAIPSRMTIGHLVECLLS 622

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D + V+ +ST L++ GYQ RG EVM++GHTGRK+ AQV+LGPTY
Sbjct: 623 KVATLIGHEGDATPFTD-LTVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTY 681

Query: 325 YQRL 328
           YQRL
Sbjct: 682 YQRL 685


>gi|52699841|gb|AAU86982.1| DNA-dependent RNA polymerase II second largest subunit [Peltigera
           canina]
          Length = 704

 Score =  338 bits (868), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 182/371 (49%), Positives = 229/371 (61%), Gaps = 84/371 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV+  N+  RMDT+A++LYYP KP+ TTR                              
Sbjct: 381 MGVFXXNYXQRMDTMANILYYPQKPMATTR------------------------------ 410

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 411 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 455

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+RSY D E KRIG    EQFEKP R     +++  Y+KLDDDGI+APG+RVSG+D++
Sbjct: 456 SLFYRSYTDQE-KRIGMSIVEQFEKPMRTDTLRLKHGTYEKLDDDGIVAPGVRVSGEDMI 514

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +P + +EL   TK   KRD ST LR++E GIVDQV+LT N +G +F K+R+R  
Sbjct: 515 IGKTAPIPPDSEELGQRTKMHIKRDASTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRXX 574

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHG KGT GI YRQE                                  
Sbjct: 575 KIPQIGDKFASRHGXKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQL 634

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VS+ +G  GDATPF + V V  +S +L+ +GYQ RG EVM+N HTG+K+ AQVFLGPT
Sbjct: 635 SKVSALRGFEGDATPFTE-VTVDSVSKILRAHGYQSRGFEVMYNAHTGQKLVAQVFLGPT 693

Query: 324 YYQRLKHMVDD 334
           YYQRL+HMVDD
Sbjct: 694 YYQRLRHMVDD 704


>gi|46277330|gb|AAS86855.1| DNA-dependent RNA polymerase II [Peziza badiofusca]
          Length = 541

 Score =  338 bits (868), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 184/363 (50%), Positives = 229/363 (63%), Gaps = 84/363 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 226 MGVFLTNYRERMDTMANILYYPQKPLGTTR------------------------------ 255

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI+CY+GYNQEDSVI+N S+++RG FR
Sbjct: 256 ---------------SMEFLKFRELPAGQNAIVAIMCYSGYNQEDSVIMNQSSIDRGLFR 300

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+FFR+Y D E KRIG    E+FEKP R     +++  YDKLDDDG++APG+RVSG+D++
Sbjct: 301 SLFFRTYMDQE-KRIGMSVVEEFEKPTRGNTLRLKHGTYDKLDDDGLVAPGVRVSGEDII 359

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  N++EL   TK  +KRD ST LR++E GIVDQVM+T N +G KF K+R+R+ 
Sbjct: 360 IGKTAPIAPNQEELGQRTKFHTKRDVSTPLRSTENGIVDQVMVTTNQEGLKFVKVRMRTT 419

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YR E                                  
Sbjct: 420 KIPQIGDKFASRHGQKGTIGITYRNEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECLL 479

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF D V V  +STLL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 480 SKVSSLRGFEGDATPFTD-VTVDSVSTLLREHGYQSRGFEVMYNGHTGRKMVAQVFLGPT 538

Query: 324 YYQ 326
           YYQ
Sbjct: 539 YYQ 541


>gi|194320238|gb|ACF48355.1| DNA-dependent RNA polymerase II second largest subunit [Lepraria
           lobificans]
          Length = 317

 Score =  338 bits (868), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 182/364 (50%), Positives = 228/364 (62%), Gaps = 84/364 (23%)

Query: 3   VYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSV 62
           V++TN+ VRMDT+A++LYYP KPL TTR                                
Sbjct: 1   VFLTNYDVRMDTMANILYYPQKPLATTR-------------------------------- 28

Query: 63  ILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSV 122
                        SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FRS+
Sbjct: 29  -------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSL 75

Query: 123 FFRSYKDAESKRIGDQE-EQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIG 181
           F+R+Y D E KRIG    E+FEKP R     +++  YDKLDDDGI+APG+RVSG+D++IG
Sbjct: 76  FYRAYTDQE-KRIGMAVVEEFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIG 134

Query: 182 KTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRI 241
           KT  +  + +EL   TK   KRD ST LR++E GIVDQV+L+ N DG +F K+R+R+ +I
Sbjct: 135 KTAPIAPDAEELGQRTKLHVKRDASTPLRSTENGIVDQVLLSTNADGLRFAKVRMRTTKI 194

Query: 242 PQIGDKFASRHGQKGTCGIQYRQE------------------------------------ 265
           PQIGDKFASRHGQKGT GI YRQE                                    
Sbjct: 195 PQIGDKFASRHGQKGTIGITYRQEDMPFTREGVVPDLIINPHAIPSRMTIAHLIECQLSK 254

Query: 266 VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYY 325
           VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPTYY
Sbjct: 255 VSSLRGFEGDATPFTE-VTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYY 313

Query: 326 QRLK 329
           QRL+
Sbjct: 314 QRLR 317


>gi|52699890|gb|AAU87006.1| DNA-dependent RNA polymerase II second largest subunit
           [Strangospora pinicola]
          Length = 703

 Score =  338 bits (868), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 181/367 (49%), Positives = 224/367 (61%), Gaps = 84/367 (22%)

Query: 4   YITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVI 63
           ++TN+  RMDT++++LYYP KPL TT S                                
Sbjct: 384 FLTNYEARMDTMSNILYYPQKPLATTSS-------------------------------- 411

Query: 64  LNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVF 123
                        MEYL+FR+LPAG N+IVAI CY+GYNQEDSVI+N S+++RG FRS+F
Sbjct: 412 -------------MEYLKFRDLPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLF 458

Query: 124 FRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGK 182
           +R+Y D E KRIG    EQFEKP R     M++  YDKLD+DGI+APG+R+SG+D++IGK
Sbjct: 459 YRAYTDQE-KRIGMSVVEQFEKPIRNETFKMKHGTYDKLDEDGIVAPGIRISGEDIIIGK 517

Query: 183 TITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIP 242
           T  +  + +EL   TK   KRD ST LR +E GIVDQV+LT N +G +F K+R R  ++P
Sbjct: 518 TAPMTADAEELGQRTKAHQKRDTSTPLRTTENGIVDQVLLTTNAEGMRFVKVRTRMTKVP 577

Query: 243 QIGDKFASRHGQKGTCGIQYRQE------------------------------------V 266
           QIGDKFASRHGQKGT GI YRQE                                    V
Sbjct: 578 QIGDKFASRHGQKGTIGITYRQEDMPFTSEGLVPDIIINPHAIPSRMTIAHLIECQLSKV 637

Query: 267 SSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQ 326
           SS  G  GDATPF + V V  +S LL+E GYQ RG EVM+NGHTGRK+ AQVFLGPTYYQ
Sbjct: 638 SSLTGREGDATPFTE-VTVDSVSKLLRENGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQ 696

Query: 327 RLKHMVD 333
           RL+HMVD
Sbjct: 697 RLRHMVD 703


>gi|291170440|gb|ADD82429.1| RNA polymerase II second largest subunit [Davidiellaceae sp. AN1]
          Length = 322

 Score =  338 bits (868), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 179/367 (48%), Positives = 222/367 (60%), Gaps = 82/367 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+ +TN++V MDT+A+VLYYP KPL TTR                              
Sbjct: 2   MGITMTNYNVXMDTMANVLYYPQKPLATTR------------------------------ 31

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 32  ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 76

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFR+Y D E K      E FEKPNR     M+   YDKLD DGII PG RVSGDD++I
Sbjct: 77  SLFFRAYLDQEKKIGMSVMESFEKPNRGDTLRMKQGTYDKLDSDGIITPGSRVSGDDIII 136

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GK   +  + +EL   TK   KRD ST LR++E GI+DQV+LT N DG KF K+R R+ +
Sbjct: 137 GKVAPIAPDAEELGQRTKLHVKRDVSTPLRSTENGIIDQVLLTTNSDGLKFVKVRTRTTK 196

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           +PQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 197 VPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGIIPDIIINPHAIPSRMTIAHLIECLLS 256

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V + +G+ GDATPF D V +  IS +L++YG+Q RG EVM+NGHTG+K+ AQ+FLGPTY
Sbjct: 257 KVGALRGQEGDATPFTD-VTLTTISHILKDYGFQQRGFEVMYNGHTGKKLAAQIFLGPTY 315

Query: 325 YQRLKHM 331
           YQRL+HM
Sbjct: 316 YQRLRHM 322


>gi|103001625|gb|ABF71515.1| DNA-dependent RNA polymerase II second largest subunit [Acarospora
           sp. Hertel 39.701]
          Length = 691

 Score =  338 bits (868), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 183/364 (50%), Positives = 227/364 (62%), Gaps = 84/364 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 375 MGVFLTNYEQRMDTMANILYYPQKPLATTR------------------------------ 404

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 405 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 449

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+RSY D E KRIG    EQFEKP R     +++  YDKLDDDGI+APG+RVSG+D++
Sbjct: 450 SLFYRSYTDQE-KRIGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDII 508

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK   KRD ST LR++E GIVDQV+LT N +G +F K+R+R+ 
Sbjct: 509 IGKTAPIAPDAEELGQRTKLHIKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTT 568

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 569 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTKEGIVPDLIINPHAIPSRMTIAHLIECQL 628

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + + V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 629 SKVSSLRGFEGDATPFTE-ITVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 687

Query: 324 YYQR 327
           YYQR
Sbjct: 688 YYQR 691


>gi|56694354|gb|AAW22917.1| RNA polymerase II second largest subunit [Thuja plicata]
          Length = 514

 Score =  338 bits (868), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 177/364 (48%), Positives = 226/364 (62%), Gaps = 84/364 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+ +RMDTLA+VLYYP  PLVTTR+                             
Sbjct: 199 MGIYVTNYQLRMDTLAYVLYYPQXPLVTTRA----------------------------- 229

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L F +LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 230 ----------------MEHLHFXQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFR 273

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY+D E +     +E+F +PNR+   GMR+  YDKLDDDG+  PG RVSG+DV+I
Sbjct: 274 SLFFRSYRDEEKRAGTLVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 333

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT   P  +D+  G   +++KRD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVR
Sbjct: 334 GKTT--PIAQDDSAGQVSKYTKRDQSTSLRHSESGMVDQVLLTTNQDGLRFVKVRMRSVR 391

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKF SRHGQKGT G+ Y QE                                   
Sbjct: 392 IPQIGDKFXSRHGQKGTVGMTYTQEXMPWXVEGITPDIIVNPHAIPSRMTIGQLIECIMG 451

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGRK++A +FLGPTY
Sbjct: 452 KVAAHMGKEGDATPFTD-VTVDSISKALHKCGYQMRGFETMYNGHTGRKLSAMIFLGPTY 510

Query: 325 YQRL 328
           YQRL
Sbjct: 511 YQRL 514


>gi|40644557|emb|CAD89597.1| RNA polymerase II, second largest subunit [Senecio vulgaris]
          Length = 325

 Score =  338 bits (867), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 178/366 (48%), Positives = 224/366 (61%), Gaps = 84/366 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF  RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 6   MGIYVTNFQFRMDTLAYVLYYPQKPLVTTRA----------------------------- 36

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 37  ----------------MEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFR 80

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY+D E K     +E F +P+R    GMR+  YDKLDDDG+  PG RV G+DV+I
Sbjct: 81  SLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVGGEDVII 140

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  + + +D  +G   R+++RD ST LR+SETG+VDQV+LT N DG +F K+RVRSVR
Sbjct: 141 GKTTPIAQ-DDAAQGQASRYTRRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVR 199

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 200 IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMG 259

Query: 266 -VSSNKGEIGDATPFNDAVN--VQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGP 322
            V+++ G+ GDATPF D     V  IS  L + GYQ+RG E M+NGHTGR++ A +FLGP
Sbjct: 260 KVAAHMGKEGDATPFTDVTVSFVDNISRALHKCGYQMRGFETMYNGHTGRRLPAMIFLGP 319

Query: 323 TYYQRL 328
           TYYQRL
Sbjct: 320 TYYQRL 325


>gi|354992131|gb|AER45772.1| RNA polymerase II second largest subunit [Pleurotus ostreatus]
          Length = 687

 Score =  338 bits (867), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 178/366 (48%), Positives = 227/366 (62%), Gaps = 82/366 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+++TNF +RMDT+A++LYYP KPL TTR                              
Sbjct: 368 MGIFLTNFLIRMDTMANILYYPQKPLATTR------------------------------ 397

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+V+RG FR
Sbjct: 398 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSVDRGLFR 442

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP+R     M++  YDKL++DG+IAPG  V G+D++I
Sbjct: 443 SMYYRSYMDLEKKSGIQQLEEFEKPSRDNTLRMKHGTYDKLENDGLIAPGTGVVGEDIII 502

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           G+T  +P + +EL   T+  ++RD ST L+++E GIVDQV++T N  G KF KIRVRS R
Sbjct: 503 GETAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVDQVLITTNHQGQKFVKIRVRSTR 562

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 563 IPQIGDKFASRHGQKGTIGITYRQEDMPFTCEGIVPDIIINPHAIPSRMTIGHLVECLLS 622

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D + V+ +S  L++ GYQ RG EVM++GHTGRK+ AQV+LGPTY
Sbjct: 623 KVATLIGNEGDATPFTD-LTVESVSAFLRQEGYQSRGLEVMYHGHTGRKLQAQVYLGPTY 681

Query: 325 YQRLKH 330
           YQRLKH
Sbjct: 682 YQRLKH 687


>gi|194320226|gb|ACF48347.1| DNA-dependent RNA polymerase II second largest subunit [Tephromela
           atra]
          Length = 317

 Score =  338 bits (867), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 183/364 (50%), Positives = 227/364 (62%), Gaps = 84/364 (23%)

Query: 3   VYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSV 62
           V++TN+  RMDT+A++LYYP KPL TTR                                
Sbjct: 1   VFLTNYDQRMDTMANILYYPQKPLATTR-------------------------------- 28

Query: 63  ILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSV 122
                        SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+V+RG FRS+
Sbjct: 29  -------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSVDRGLFRSL 75

Query: 123 FFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIG 181
           F+RSY D E KRIG    EQFEKP R     +++  YDKLDDDGI+APG+RVSG+D++IG
Sbjct: 76  FYRSYTDQE-KRIGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIG 134

Query: 182 KTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRI 241
           KT  +  + +EL   TK   KRD ST LR++E GIVDQV+L+ N DG +F K+R+R+ ++
Sbjct: 135 KTAPIAPDAEELGQRTKLHVKRDTSTPLRSTENGIVDQVLLSTNADGLRFVKVRMRTTKV 194

Query: 242 PQIGDKFASRHGQKGTCGIQYRQE------------------------------------ 265
           PQIGDKFASRHGQKGT GI YRQE                                    
Sbjct: 195 PQIGDKFASRHGQKGTIGITYRQEDMPFTGEGVVPDLIINPHAIPSRMTIAHLIECQLSK 254

Query: 266 VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYY 325
           VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPTYY
Sbjct: 255 VSSLRGYEGDATPFTE-VTVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYY 313

Query: 326 QRLK 329
           QRL+
Sbjct: 314 QRLR 317


>gi|46277308|gb|AAS86844.1| DNA-dependent RNA polymerase II [Marcelleina persoonii]
          Length = 561

 Score =  338 bits (867), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 181/363 (49%), Positives = 228/363 (62%), Gaps = 84/363 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 246 MGVFLTNYSERMDTMANILYYPQKPLATTR------------------------------ 275

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 276 ---------------SMEFLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 320

Query: 121 SVFFRSYKDAESKRIGDQE-EQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+FFRSY D E K+IG+   EQFEKP R     +++  YDKLDDDG++APG+R+SG+D++
Sbjct: 321 SLFFRSYTDQE-KKIGNSVLEQFEKPTRGNTLRLKHGTYDKLDDDGLVAPGVRISGEDII 379

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  N +EL   TK  +KRD ST LR++E GIVDQV++T+N +G KF K+R+R+ 
Sbjct: 380 IGKTAPIAPNTEELGQRTKYHTKRDASTPLRSTENGIVDQVLITVNGEGLKFVKVRMRTT 439

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           ++PQIGDKFASRHGQKGT GI YR E                                  
Sbjct: 440 KVPQIGDKFASRHGQKGTIGITYRNEDMPFTCEGVVPDLIINPHAIPSRMTIAHLIECQL 499

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + V V  +S LL+E GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 500 SKVSSLRGFEGDATPFTE-VTVDSVSKLLREMGYQSRGFEVMYNGHTGRKLVAQVFLGPT 558

Query: 324 YYQ 326
           YYQ
Sbjct: 559 YYQ 561


>gi|299849857|gb|ADJ57175.1| RNA polymerase II second largest subunit [Scytalidium cuboideum]
          Length = 322

 Score =  338 bits (867), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 180/369 (48%), Positives = 229/369 (62%), Gaps = 84/369 (22%)

Query: 2   GVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDS 61
           GV++TN+  RMDT+A++LYYP KPL TTR                               
Sbjct: 1   GVFLTNYDQRMDTMANILYYPQKPLATTR------------------------------- 29

Query: 62  VILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRS 121
                         SME+L+FRELPAG N+IVAI CY+GYN EDSVI+N S+++RG FRS
Sbjct: 30  --------------SMEFLKFRELPAGQNAIVAIACYSGYNXEDSVIMNQSSIDRGLFRS 75

Query: 122 VFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           +F+R+Y D E KRIG +  EQFEKP R     +++  YDKLDDDGIIAPG+RVSG+D++I
Sbjct: 76  LFYRAYTDQE-KRIGMNVVEQFEKPFRADTLKLKHGTYDKLDDDGIIAPGVRVSGEDIII 134

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +  + +EL   TK   KRD ST LR++E GIVDQV++T N +G +F K+R+R+ +
Sbjct: 135 GKTAPIAPDSEELGQRTKAHVKRDASTPLRSTENGIVDQVLITTNAEGLRFVKVRMRTTK 194

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 195 IPQIGDKFASRHGQKGTIGITYRQEDMPFTRQGIVPDLIINPHAIPSRMTIAHLIECQLS 254

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            VS+ +G  GD TPF + V V  +S LL+ +GYQ RG E+M++GHTGRK+ AQVF GPTY
Sbjct: 255 KVSTLRGLEGDXTPFTE-VTVDSVSKLLRAHGYQSRGFEIMYHGHTGRKLKAQVFFGPTY 313

Query: 325 YQRLKHMVD 333
           YQRL+HMVD
Sbjct: 314 YQRLRHMVD 322


>gi|52699829|gb|AAU86976.1| DNA-dependent RNA polymerase II second largest subunit [Lempholemma
           polyanthes]
          Length = 714

 Score =  338 bits (867), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 179/374 (47%), Positives = 232/374 (62%), Gaps = 82/374 (21%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+++TN+  RMDT++++LYYP KPL TTR                              
Sbjct: 387 MGIFLTNYIQRMDTMSNILYYPQKPLATTR------------------------------ 416

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI  Y+GYNQEDSVI+N S+++RG FR
Sbjct: 417 ---------------SMEFLKFRELPAGQNAIVAIAVYSGYNQEDSVIMNQSSIDRGLFR 461

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+F+RSY D E K    Q E FE+P R     ++   YDK+D+DGIIAPG+RV GDD++I
Sbjct: 462 SLFYRSYTDQEKKLGMSQMESFERPMRDDTLRIKRGTYDKIDEDGIIAPGVRVIGDDIII 521

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  L  + +EL   TK  +KRD ST LR++E GIVD+V++T+N DG +F K+R+R+ +
Sbjct: 522 GKTAPLAPDAEELGQRTKGQTKRDVSTPLRSTEQGIVDRVLVTVNADGQRFVKVRMRTTK 581

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           +PQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 582 VPQIGDKFASRHGQKGTIGITYRQEDMPFTREGIVPDLIINPHAIPSRMTIAHLIECQLS 641

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++ +G  GDATPF D + V  +S LL+E+GYQ RG EVM+NGHTG+K+ AQVFLGPTY
Sbjct: 642 KVAALQGFEGDATPFTD-ITVDSVSRLLREHGYQSRGFEVMYNGHTGKKLVAQVFLGPTY 700

Query: 325 YQRLKHMVDDKIHS 338
           YQRL+HMVD KI +
Sbjct: 701 YQRLRHMVDXKIXA 714


>gi|194320141|gb|ACF48292.1| DNA-dependent RNA polymerase II second largest subunit [Squamarina
           gypsacea]
          Length = 317

 Score =  338 bits (867), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 181/364 (49%), Positives = 228/364 (62%), Gaps = 84/364 (23%)

Query: 3   VYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSV 62
           V++TN+ VRMDT+A++LYYP KPL TTR                                
Sbjct: 1   VFLTNYDVRMDTMANILYYPQKPLATTR-------------------------------- 28

Query: 63  ILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSV 122
                        SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FRS+
Sbjct: 29  -------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSL 75

Query: 123 FFRSYKDAESKRIGDQE-EQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIG 181
           F+R+Y D E KRIG    E+FEKP R     +++  YDKLDDDGI+APG+RVSG+D++IG
Sbjct: 76  FYRAYTDQE-KRIGVAVVEEFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIG 134

Query: 182 KTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRI 241
           KT  +  + +EL   TK   KRD ST LR++E GIVDQV+L+ N DG +F K+R+R+ ++
Sbjct: 135 KTAPIAPDAEELGQRTKLHVKRDASTPLRSTENGIVDQVLLSTNADGLRFAKVRMRTTKV 194

Query: 242 PQIGDKFASRHGQKGTCGIQYRQE------------------------------------ 265
           PQIGDKFASRHGQKGT GI YRQE                                    
Sbjct: 195 PQIGDKFASRHGQKGTIGITYRQEDMPFTREGVVPDLIINPHAIPSRMTIAHLIECQLSK 254

Query: 266 VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYY 325
           VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPTYY
Sbjct: 255 VSSLRGFEGDATPFTE-VTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYY 313

Query: 326 QRLK 329
           QRL+
Sbjct: 314 QRLR 317


>gi|46277326|gb|AAS86853.1| DNA-dependent RNA polymerase II [Iodowynnea auriformis]
          Length = 556

 Score =  338 bits (866), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 183/363 (50%), Positives = 229/363 (63%), Gaps = 84/363 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 241 MGVFLTNYRERMDTMANILYYPQKPLGTTR------------------------------ 270

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 271 ---------------SMEFLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 315

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+FFR+Y D E KRIG    E+FEKP+R     +++  YDKLD+DG++APG+RVSG+D++
Sbjct: 316 SLFFRTYMDQE-KRIGMSVVEEFEKPSRGNTLRLKHGTYDKLDEDGLVAPGVRVSGEDII 374

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  N++EL   TK  +KRD ST LR++E GIVDQVM+T N +G KF K+R+R+ 
Sbjct: 375 IGKTAPIAPNQEELGQRTKFHTKRDVSTPLRSTENGIVDQVMVTTNSEGLKFVKVRMRTT 434

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           ++PQIGDKFASRHGQKGT GI YR E                                  
Sbjct: 435 KVPQIGDKFASRHGQKGTIGITYRNEDMPFTAEGIVPDLIINPHAIPSRMTIAHLIECLI 494

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF D V V  IS LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 495 SKVSSLRGYEGDATPFTD-VTVDSISKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 553

Query: 324 YYQ 326
           YYQ
Sbjct: 554 YYQ 556


>gi|194320150|gb|ACF48298.1| DNA-dependent RNA polymerase II second largest subunit [Bacidina
           arnoldiana]
          Length = 314

 Score =  338 bits (866), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 180/360 (50%), Positives = 225/360 (62%), Gaps = 82/360 (22%)

Query: 6   TNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILN 65
           TNF+  MDT+A++LYYP KPL TTR                                   
Sbjct: 1   TNFNTXMDTMANILYYPQKPLGTTR----------------------------------- 25

Query: 66  ASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFR 125
                     SME+LRFRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FRS+F+R
Sbjct: 26  ----------SMEFLRFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYR 75

Query: 126 SYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTIT 185
           +Y D E K   +  E+FEKP R T   M+ A YDKLDDDGI+APG+RVSG+D++IGKT  
Sbjct: 76  AYTDQEKKVGANTVEEFEKPMRSTTLRMKQATYDKLDDDGIVAPGVRVSGEDIIIGKTAP 135

Query: 186 LPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIG 245
           +  + +EL   +K  +KRD ST LR++E GIVDQVM++ N DG +F K+R+R+ +IPQIG
Sbjct: 136 ITADHNELGQRSKLHAKRDVSTPLRSTENGIVDQVMVSTNSDGLRFAKVRMRTTKIPQIG 195

Query: 246 DKFASRHGQKGTCGIQYRQE------------------------------------VSSN 269
           DKFASRHGQKGT GI YRQE                                    VS+ 
Sbjct: 196 DKFASRHGQKGTIGITYRQEDMPFTSEGIVPDLIINPHAIPSRMTIAHLIECQLSKVSAL 255

Query: 270 KGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQRLK 329
           +G  GDATPF + V V K+S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPTYYQRL+
Sbjct: 256 RGCEGDATPFTE-VTVDKVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLR 314


>gi|52699868|gb|AAU86995.1| DNA-dependent RNA polymerase II second largest subunit [Rhytisma
           acerinum]
          Length = 708

 Score =  338 bits (866), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 181/369 (49%), Positives = 230/369 (62%), Gaps = 84/369 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG  +TNF  RMDT++++LYYP KPL TTR                              
Sbjct: 387 MGXXLTNFDXRMDTMSNILYYPQKPLATTR------------------------------ 416

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 417 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 461

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+R+Y D E KRIG +  E FEKP R     +++  YDKLD+DGI+APG+RVSG+D++
Sbjct: 462 SLFYRAYTDQE-KRIGMNLVEAFEKPYRNDTLKLKHGTYDKLDEDGIVAPGVRVSGEDII 520

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  L  + +EL   TK   KRD ST LR++E GIVDQV++T N +G +F K+R+R+ 
Sbjct: 521 IGKTAPLAPDNEELGQRTKGHVKRDASTPLRSTENGIVDQVLVTTNAEGLRFVKVRMRTT 580

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 581 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTRQGIVPDIIINPHAIPSRMTIAHLIECQL 640

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             V + +G  GDATPF + V V  +S LL+++GYQ RG EVM++GHTGRK+NAQVFLGPT
Sbjct: 641 SKVGTLRGLEGDATPFTE-VTVDSVSKLLRDHGYQSRGFEVMYHGHTGRKMNAQVFLGPT 699

Query: 324 YYQRLKHMV 332
           YYQRL+HMV
Sbjct: 700 YYQRLRHMV 708


>gi|55583708|gb|AAV53373.1| RNA polymerase II second largest subunit [Hymenopellis radicata]
          Length = 669

 Score =  338 bits (866), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 173/363 (47%), Positives = 227/363 (62%), Gaps = 82/363 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+++TNF +RMDT+A++LYYP KPL TTR                              
Sbjct: 353 MGIFLTNFLIRMDTMANILYYPQKPLATTR------------------------------ 382

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 383 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 427

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K      E+FEKP+R++   M++  YDKL+DDG+IAPG  V G+D++I
Sbjct: 428 SIYYRSYMDVEKKSGVQALEEFEKPSRESTLRMKHGTYDKLEDDGLIAPGTGVVGEDIII 487

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E+GI+DQV++T N DG KF K+RVR+ R
Sbjct: 488 GKTAPIPPDSEELGQRTRMHTRRDVSTPLKSTESGIIDQVLITTNADGQKFVKVRVRATR 547

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQ GDKFASRHGQKGT GI YRQE                                   
Sbjct: 548 IPQTGDKFASRHGQKGTIGITYRQEDMPFTCEGIVPDIIINPHAIPSRMTIGHLVECLLS 607

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D + V+ +ST L++ GYQ RG EVM++GHTGRK+ AQV+LGPTY
Sbjct: 608 KVATLIGHEGDATPFTD-LTVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTY 666

Query: 325 YQR 327
           YQR
Sbjct: 667 YQR 669


>gi|194320229|gb|ACF48349.1| DNA-dependent RNA polymerase II second largest subunit [Tephromela
           atra]
          Length = 317

 Score =  338 bits (866), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 182/364 (50%), Positives = 227/364 (62%), Gaps = 84/364 (23%)

Query: 3   VYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSV 62
           V++TN+  RMDT+A++LYYP KPL TTR                                
Sbjct: 1   VFLTNYDQRMDTMANILYYPQKPLATTR-------------------------------- 28

Query: 63  ILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSV 122
                        SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FRS+
Sbjct: 29  -------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSL 75

Query: 123 FFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIG 181
           F+RSY D E KRIG    EQFEKP R     +++  YDKLDDDGI+APG+RVSG+D++IG
Sbjct: 76  FYRSYTDQE-KRIGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIG 134

Query: 182 KTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRI 241
           KT  +  + +EL   TK   KRD ST LR++E GIVDQV+L+ N DG +F K+R+R+ ++
Sbjct: 135 KTAPIAPDAEELGQRTKLHVKRDTSTPLRSTENGIVDQVLLSTNADGLRFVKVRMRTTKV 194

Query: 242 PQIGDKFASRHGQKGTCGIQYRQE------------------------------------ 265
           PQIGDKFASRHGQKGT GI YRQE                                    
Sbjct: 195 PQIGDKFASRHGQKGTIGITYRQEDMPFTGEGVVPDLIINPHAIPSRMTIAHLIECQLSK 254

Query: 266 VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYY 325
           VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPTYY
Sbjct: 255 VSSLRGYEGDATPFTE-VTVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYY 313

Query: 326 QRLK 329
           QRL+
Sbjct: 314 QRLR 317


>gi|2736119|gb|AAB94060.1| RPB140 [Spinacia oleracea]
          Length = 556

 Score =  338 bits (866), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 188/373 (50%), Positives = 231/373 (61%), Gaps = 84/373 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+  RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 232 MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA----------------------------- 262

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N SA++RG+FR
Sbjct: 263 ----------------MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSAIDRGFFR 306

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY+D E K     +E F +P+R    GMR+  YDKLDDDG+  PG R +G+DV+I
Sbjct: 307 SLFFRSYRDEEKKMGTLDKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRCAGEDVII 366

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT   P   DE  G + R+S+RD S  LR+SETG+VDQV+ T N DG +F K+RVRSVR
Sbjct: 367 GKTT--PLAPDEATGPSARYSRRDHSISLRHSETGMVDQVLPTTNADGLRFVKVRVRSVR 424

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           +PQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 425 VPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMG 484

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGRK+ A +FLGPTY
Sbjct: 485 KVAAHVGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRKLTAMIFLGPTY 543

Query: 325 YQRLKHMVDDKIH 337
           YQRLKHMVDDKIH
Sbjct: 544 YQRLKHMVDDKIH 556


>gi|320172588|gb|ADW24177.1| RNA polymerase II second largest subunit [Gloeophyllum trabeum]
          Length = 648

 Score =  338 bits (866), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 176/359 (49%), Positives = 224/359 (62%), Gaps = 82/359 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF VRMDT+A++LYYP KPL TTR                              
Sbjct: 336 MGIYLTNFLVRMDTMANILYYPQKPLATTR------------------------------ 365

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYLRFRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 366 ---------------SMEYLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 410

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP R T   M++  YDK++DDG+IAPG  V+GDD++I
Sbjct: 411 SIYYRSYMDLEKKSGVQQLEEFEKPTRDTTLRMKHGTYDKIEDDGLIAPGTGVNGDDIII 470

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E+GIVDQV++T N +G KF K+RVRS R
Sbjct: 471 GKTAPIPPDSEELGQRTRSHTRRDVSTALKSTESGIVDQVLITTNSEGQKFVKVRVRSTR 530

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 531 IPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLS 590

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
            V++  G  GDATPF D + V+ +ST L++ GYQ RG EVM++GHTGRK+ AQV+LGPT
Sbjct: 591 KVATLIGNEGDATPFTD-LTVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPT 648


>gi|354992119|gb|AER45766.1| RNA polymerase II second largest subunit [Pleurotus ostreatus]
          Length = 687

 Score =  337 bits (865), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 178/366 (48%), Positives = 227/366 (62%), Gaps = 82/366 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+++TNF +RMDT+A++LYYP KPL TTR                              
Sbjct: 368 MGIFLTNFLIRMDTMANILYYPQKPLATTR------------------------------ 397

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+V+RG FR
Sbjct: 398 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSVDRGLFR 442

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP+R     M++  YDKL++DG+IAPG  V G+D+V+
Sbjct: 443 SMYYRSYMDLEKKSGIQQLEEFEKPSRDNTLRMKHGTYDKLENDGLIAPGTGVVGEDIVV 502

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E GIVDQV++T N +G KF KIRVRS R
Sbjct: 503 GKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVDQVLITTNHEGQKFVKIRVRSTR 562

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDK ASRHGQKGT GI YRQE                                   
Sbjct: 563 IPQIGDKSASRHGQKGTIGITYRQEDMPFTCEGIVPDIIINPHAIPSRMTIGHLVECLLS 622

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D + V+ +S  L++ GYQ RG EVM++GHTGRK+ AQV+LGPTY
Sbjct: 623 KVATLIGNEGDATPFTD-LTVESVSAFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTY 681

Query: 325 YQRLKH 330
           YQRLKH
Sbjct: 682 YQRLKH 687


>gi|45545341|gb|AAS67518.1| DNA-dependent RNA polymerase II second largest subunit, partial
           [Peltigera membranacea]
          Length = 895

 Score =  337 bits (865), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 180/367 (49%), Positives = 229/367 (62%), Gaps = 84/367 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+  RMDT+A++LYYP KP+ TTR                              
Sbjct: 576 MGVFLTNYDQRMDTMANILYYPQKPMATTR------------------------------ 605

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 606 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 650

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+RSY D E KRIG    EQFEKP R     +++  Y+KLDDDGI+APG+RVSG+D++
Sbjct: 651 SLFYRSYTDQE-KRIGMSIVEQFEKPMRTDTLRLKHGTYEKLDDDGIVAPGVRVSGEDMI 709

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +P + +EL   TK   KRD ST LR++E GIVDQV+LT N +G +F K+R+R+ 
Sbjct: 710 IGKTAPIPPDSEELGQRTKMHIKRDASTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTT 769

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 770 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQL 829

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VS+ +G  GDATPF + V V  +S +L+ +GYQ RG EVM+N HTG+K+ AQVFLGPT
Sbjct: 830 SKVSALRGFEGDATPFTE-VTVDSVSKILRAHGYQSRGFEVMYNAHTGQKLVAQVFLGPT 888

Query: 324 YYQRLKH 330
           YYQRL+H
Sbjct: 889 YYQRLRH 895


>gi|40643996|emb|CAD91515.1| RNA polymerase II second largest subunit [Hedera helix]
          Length = 541

 Score =  337 bits (865), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 179/365 (49%), Positives = 224/365 (61%), Gaps = 85/365 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF  RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 225 MGIYVTNFQFRMDTLAYVLYYPQKPLVTTRA----------------------------- 255

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 256 ----------------MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 299

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY+D E K     +E F +P+R    GMR+  YDKLDDDG+  PG RVSG+DV+I
Sbjct: 300 SIFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 359

Query: 181 GKTITLPENEDELEG-TTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           GKT   P  +D+ +G    R+++RD ST LR+SETG+VDQV+LT N DG +F K+RVRS 
Sbjct: 360 GKTT--PIAQDDAQGQAASRYTRRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSX 417

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           RIP IGDKF+SRHGQKGT G+ Y QE                                  
Sbjct: 418 RIPXIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIM 477

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGR++ A +FLGPT
Sbjct: 478 GKVAAHMGKEGDATPFTD-VTVDNISRALHKCGYQMRGFETMYNGHTGRRLTAMIFLGPT 536

Query: 324 YYQRL 328
           YYQRL
Sbjct: 537 YYQRL 541


>gi|103001472|gb|ABF71509.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
           chlorophanum]
          Length = 686

 Score =  337 bits (865), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 183/364 (50%), Positives = 227/364 (62%), Gaps = 84/364 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 370 MGVFLTNYDQRMDTMANILYYPQKPLATTR------------------------------ 399

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 400 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 444

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+RSY D E KRIG    EQFEKP R     +++  YDKLDDDGI+APG+RVSG+D++
Sbjct: 445 SLFYRSYTDQE-KRIGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDII 503

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK   KRD ST LR++E GIVDQV+LT N +G +F K+R+R+ 
Sbjct: 504 IGKTAPIAPDAEELGQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTT 563

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 564 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTKEGIVPDLIINPHAIPSRMTIAHLIECQL 623

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTG+K+ AQVFLGPT
Sbjct: 624 SKVSSLRGFEGDATPFTE-VTVDSVSKLLREHGYQSRGFEVMYNGHTGQKLVAQVFLGPT 682

Query: 324 YYQR 327
           YYQR
Sbjct: 683 YYQR 686


>gi|52699851|gb|AAU86987.1| DNA-dependent RNA polymerase II second largest subunit [Petractis
           luetkemuelleri]
          Length = 716

 Score =  337 bits (865), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 183/370 (49%), Positives = 229/370 (61%), Gaps = 84/370 (22%)

Query: 6   TNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILN 65
           TNF  RMDT+A++LYYP KPL TTR                                   
Sbjct: 394 TNFDERMDTMANILYYPQKPLATTR----------------------------------- 418

Query: 66  ASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFR 125
                     SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FRS+++R
Sbjct: 419 ----------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLYYR 468

Query: 126 SYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTI 184
            Y + E KRIG    EQFEKP R     +++  Y+KLDDDGIIAPG+RVSG+D++IGKT 
Sbjct: 469 VYVEQE-KRIGMSLVEQFEKPLRSETLRVKHGTYEKLDDDGIIAPGVRVSGEDIIIGKTA 527

Query: 185 TLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQI 244
            +  + +EL   TK  +KRD ST LR++E GIVD+V+LT N +G KF K+R+R+ ++P I
Sbjct: 528 PIAPDAEELGQRTKLHTKRDASTPLRSTENGIVDKVLLTTNAEGLKFVKVRMRTTKVPXI 587

Query: 245 GDKFASRHGQKGTCGIQYRQE------------------------------------VSS 268
           GDKFASRHGQKGT GI YRQE                                    VSS
Sbjct: 588 GDKFASRHGQKGTIGITYRQEDMPFSAEGITPDLIINPHAIPSRMTIAHLIECQLSKVSS 647

Query: 269 NKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQRL 328
            +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVF GPTYYQRL
Sbjct: 648 LRGFEGDATPFTE-VTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFFGPTYYQRL 706

Query: 329 KHMVDDKIHS 338
           +HMV  KIH+
Sbjct: 707 RHMVXXKIHA 716


>gi|46411504|gb|AAS94322.1| RNA polymerase II [Astrothelium cinnamomeum]
          Length = 722

 Score =  337 bits (865), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 184/373 (49%), Positives = 226/373 (60%), Gaps = 84/373 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV +TNF  RMDT+ +VLYYP KPL TT S                             
Sbjct: 397 MGVMLTNFASRMDTMVNVLYYPQKPLATTHS----------------------------- 427

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           M+YL F+ELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 428 ----------------MKYLNFQELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 471

Query: 121 SVFFRSYKDAESKRIGDQE-EQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+RSY D E KRIG    E+FEKP R     ++   YDKLD+DGII+PG+RVSG+D++
Sbjct: 472 SLFYRSYTDQE-KRIGSTVLEEFEKPMRSDTLRLKRGTYDKLDNDGIISPGVRVSGEDII 530

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK  +KRD ST LR++E GIVDQV+LT N +G KF K+R R+ 
Sbjct: 531 IGKTAPIAPDVEELGQRTKLHTKRDVSTPLRSTENGIVDQVVLTTNTEGLKFVKVRTRTT 590

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           ++PQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 591 KVPQIGDKFASRHGQKGTIGITYRQEDMPFTSQGITPDLIINPHAIPSRMTIAHLVECLL 650

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             + S  G  GDATPF+  + V  IS  L+E G+Q RG EVM+NGHTGRK+ AQVF GPT
Sbjct: 651 SKLGSLTGNEGDATPFS-PITVSDISNFLRENGFQSRGFEVMYNGHTGRKLRAQVFFGPT 709

Query: 324 YYQRLKHMVDDKI 336
           YYQRL+HMVDDKI
Sbjct: 710 YYQRLRHMVDDKI 722


>gi|123979412|gb|ABM81531.1| RNA polymerase II second largest subunit [Platismatia glauca]
          Length = 358

 Score =  337 bits (865), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 181/366 (49%), Positives = 228/366 (62%), Gaps = 84/366 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 40  MGVFLTNYQQRMDTMANILYYPQKPLATTR------------------------------ 69

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 70  ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 114

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+R+Y D E KRIG    EQFEKP R     +++  YDKLDDDG++APG+RVSG+D++
Sbjct: 115 SLFYRAYTDQE-KRIGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGLVAPGVRVSGEDII 173

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK   KRD ST LR++E GIVDQV+L+ N +G +F K+R+R+ 
Sbjct: 174 IGKTAPIAPDAEELGQRTKLHVKRDTSTPLRSTENGIVDQVLLSTNAEGLRFVKVRMRTT 233

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 234 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGMVPDLIINPHAIPSRMTIAHLIECLL 293

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+  QVFLGPT
Sbjct: 294 SKVSSLRGFEGDATPFTE-VTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVTQVFLGPT 352

Query: 324 YYQRLK 329
           YYQRL+
Sbjct: 353 YYQRLR 358


>gi|119710058|gb|ABL96277.1| RNA polymerase II second largest subunit [Lepraria incana]
          Length = 317

 Score =  337 bits (864), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 181/364 (49%), Positives = 227/364 (62%), Gaps = 84/364 (23%)

Query: 3   VYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSV 62
           V++TN+ VRMDT+A++LYYP KPL TTR                                
Sbjct: 1   VFLTNYDVRMDTMANILYYPQKPLATTR-------------------------------- 28

Query: 63  ILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSV 122
                        SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FRS+
Sbjct: 29  -------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSL 75

Query: 123 FFRSYKDAESKRIGDQE-EQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIG 181
           F+R+Y D E KRIG    E+FEKP R     +++  YDKLDDDGI+APG+RVSG+D++IG
Sbjct: 76  FYRAYTDQE-KRIGMAVVEEFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIG 134

Query: 182 KTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRI 241
           KT  +  + +EL   TK   KRD ST LR++E GIVDQ +L+ N DG +F K+R+R+ +I
Sbjct: 135 KTAPIAPDAEELGQRTKLHVKRDASTPLRSTENGIVDQALLSTNADGLRFAKVRMRTTKI 194

Query: 242 PQIGDKFASRHGQKGTCGIQYRQE------------------------------------ 265
           PQIGDKFASRHGQKGT GI YRQE                                    
Sbjct: 195 PQIGDKFASRHGQKGTIGITYRQEDMPFTREGVVPDLIINPHAIPSRMTIAHLIECQLSK 254

Query: 266 VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYY 325
           VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPTYY
Sbjct: 255 VSSLRGFEGDATPFTE-VTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYY 313

Query: 326 QRLK 329
           QRL+
Sbjct: 314 QRLR 317


>gi|103001497|gb|ABF71510.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
           gobiense]
          Length = 695

 Score =  337 bits (864), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 183/364 (50%), Positives = 226/364 (62%), Gaps = 84/364 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 379 MGVFLTNYDQRMDTMANILYYPQKPLATTR------------------------------ 408

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++ G FR
Sbjct: 409 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDHGLFR 453

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+RSY D E KRIG    EQFEKP R     +++  YDKLDDDGI+APG+RVSG+D++
Sbjct: 454 SLFYRSYTDQE-KRIGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDII 512

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK   KRD ST LR++E GIVDQV+LT N +G +F K+R+R+ 
Sbjct: 513 IGKTAPIAPDAEELGQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTT 572

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 573 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTKEGIVPDLIINPHAIPSRMTIAHLIECQL 632

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 633 SKVSSLRGFEGDATPFTE-VTVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 691

Query: 324 YYQR 327
           YYQR
Sbjct: 692 YYQR 695


>gi|300394734|gb|ADK11905.1| DNA-directed RNA polymerase II subunit two, partial [Porphyrellus
           porphyrosporus]
          Length = 689

 Score =  337 bits (864), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 174/363 (47%), Positives = 224/363 (61%), Gaps = 82/363 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF VRMDT+A++LYYP KPL TTR                              
Sbjct: 373 MGIYLTNFLVRMDTMANILYYPQKPLATTR------------------------------ 402

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 403 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 447

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP R     M++  YDKL+DDG+IAPG  V G+D++I
Sbjct: 448 SIYYRSYMDLEKKSGVQQLEEFEKPTRDNTLRMKHGTYDKLEDDGLIAPGTNVKGEDIII 507

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E GIVDQV++T N +G KF K+RVR+ R
Sbjct: 508 GKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRATR 567

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 568 IPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGVVPDLIINPHAIPSRMTIGHLVECLLS 627

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D + V+ +ST L++ GY  RG EVM++GHTG+K+ AQ++LGPTY
Sbjct: 628 KVATLIGNEGDATPFTD-LTVESVSTFLRQKGYHSRGLEVMYHGHTGKKLQAQIYLGPTY 686

Query: 325 YQR 327
           YQR
Sbjct: 687 YQR 689


>gi|300394684|gb|ADK11880.1| DNA-directed RNA polymerase II subunit two, partial [Coniophora
           arida]
          Length = 687

 Score =  337 bits (863), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 176/360 (48%), Positives = 224/360 (62%), Gaps = 82/360 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF VRMDT+A++LYYP KPL TTR                              
Sbjct: 374 MGIYLTNFLVRMDTMANILYYPQKPLATTR------------------------------ 403

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 404 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 448

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP R T   M++  YDK++DDG+IAPG  VSG+D++I
Sbjct: 449 SIYYRSYMDLEKKSGIQQLEEFEKPTRDTTLRMKHGTYDKIEDDGLIAPGTGVSGEDIII 508

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E GIVDQV++T N +G KF K+RVRS R
Sbjct: 509 GKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTR 568

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 569 IPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLS 628

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D + V+ +ST L++ GYQ RG EVM++GHTGRK+ AQV+LGPTY
Sbjct: 629 KVATLIGNEGDATPFTD-LTVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTY 687


>gi|123979420|gb|ABM81535.1| RNA polymerase II second largest subunit [Dirinaria applanata]
          Length = 705

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 181/366 (49%), Positives = 227/366 (62%), Gaps = 83/366 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TNF  RM+T++H+LYYP KPL TTR                              
Sbjct: 386 MGVFLTNFDQRMETMSHILYYPQKPLATTR------------------------------ 415

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 416 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 460

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDD-DGIIAPGLRVSGDDVV 179
           S F+RSY D E K      EQFEKP R     +++  YDKLDD DGII PG RVSG+D++
Sbjct: 461 SPFYRSYTDQEKKIGMYTMEQFEKPARTDTLKLKHGTYDKLDDTDGIIIPGARVSGEDII 520

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK  +KRD ST LR++E+G+VDQV+LT+N +G +F K+R+R+ 
Sbjct: 521 IGKTAPIAPDAEELGQRTKLHNKRDASTPLRSTESGLVDQVLLTVNSEGLRFVKVRMRTT 580

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 581 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGIVPDLIINPHAIPSRMTIAHLIECQL 640

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + V V  +S+LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 641 SKVSSLRGFEGDATPFTE-VTVDSVSSLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 699

Query: 324 YYQRLK 329
           YYQRL+
Sbjct: 700 YYQRLR 705


>gi|299849848|gb|ADJ57169.1| RNA polymerase II second largest subunit [Xylogone sphaerospora]
          Length = 321

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 180/368 (48%), Positives = 228/368 (61%), Gaps = 84/368 (22%)

Query: 2   GVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDS 61
           GV++TNF  RMDT+A++LYYP KPL TTR                               
Sbjct: 1   GVFLTNFDQRMDTMANILYYPQKPLATTR------------------------------- 29

Query: 62  VILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRS 121
                         SME+L+FRELPAG N+IVAI CY+GYNQ DSVI+N S+++RG FRS
Sbjct: 30  --------------SMEFLKFRELPAGQNAIVAIACYSGYNQXDSVIMNQSSIDRGLFRS 75

Query: 122 VFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           +F+R+Y D E KRIG +  EQFEKP R     +++  YDKLDDDGIIAPG+RVSG+D++I
Sbjct: 76  LFYRAYTDQE-KRIGMNVVEQFEKPFRADTLKLKHGTYDKLDDDGIIAPGVRVSGEDIII 134

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +  + +EL   TK   KRD ST LR++E GIVDQV++T N +G +F K+ +R+ +
Sbjct: 135 GKTAPIAPDSEELGQRTKAHVKRDASTPLRSTENGIVDQVLITTNAEGLRFVKVXMRTTK 194

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 195 IPQIGDKFASRHGQKGTIGITYRQEDMPFTRQGIVPDLIINPHAIPSRMTIAHLIECQLS 254

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            VS+ +G  GDATPF + V V  +S LL+ +GYQ RG E+M++GHTGRK+ AQVF GPTY
Sbjct: 255 KVSTLRGLEGDATPFTE-VTVDSVSKLLRAHGYQSRGFEIMYHGHTGRKLRAQVFFGPTY 313

Query: 325 YQRLKHMV 332
           YQRL+HMV
Sbjct: 314 YQRLRHMV 321


>gi|110669598|gb|ABG81894.1| RNA polymerase II second largest subunit [Monascus purpureus]
          Length = 700

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 183/365 (50%), Positives = 227/365 (62%), Gaps = 84/365 (23%)

Query: 3   VYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSV 62
           V++TNF  RM+T+A++LYYP KPL TTR                                
Sbjct: 383 VFLTNFDQRMETMANILYYPQKPLATTR-------------------------------- 410

Query: 63  ILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSV 122
                        SME+LRFRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FRS+
Sbjct: 411 -------------SMEFLRFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSL 457

Query: 123 FFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIG 181
           F+R+Y D+E K IG    E+FEKP R    GMR   YDKLDDDGIIAPG+RVSG+D++IG
Sbjct: 458 FYRTYTDSE-KMIGLTVVERFEKPMRTDTLGMRKGTYDKLDDDGIIAPGVRVSGEDIIIG 516

Query: 182 KTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRI 241
           KT  L    +EL   TK  +K D ST LR++E+GIVDQV+++ + D  KF K+R+R+ +I
Sbjct: 517 KTAPLAPEAEELGQRTKAHTKLDASTPLRSTESGIVDQVLVSTSNDDLKFVKVRMRTTKI 576

Query: 242 PQIGDKFASRHGQKGTCGIQYRQE------------------------------------ 265
           PQIGDKFASRHGQKGT GI YRQE                                    
Sbjct: 577 PQIGDKFASRHGQKGTIGITYRQEDMPFTREGLTPDLIINPHAIPSRMTIAHLIECQLSK 636

Query: 266 VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYY 325
           VS+ +G  GDATPF D V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQ+FLGPTYY
Sbjct: 637 VSALRGFEGDATPFTD-VTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQIFLGPTYY 695

Query: 326 QRLKH 330
           QRL+H
Sbjct: 696 QRLRH 700


>gi|194320153|gb|ACF48300.1| DNA-dependent RNA polymerase II second largest subunit [Catolechia
           wahlenbergii]
          Length = 317

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 181/364 (49%), Positives = 227/364 (62%), Gaps = 84/364 (23%)

Query: 3   VYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSV 62
           V++TN+  RMDT+A++LYYP KPL TTR                                
Sbjct: 1   VFLTNYDQRMDTMANILYYPQKPLATTR-------------------------------- 28

Query: 63  ILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSV 122
                        SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FRS+
Sbjct: 29  -------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSL 75

Query: 123 FFRSYKDAESKRIGDQ-EEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIG 181
           F+R+Y D E KR+G+   EQFEKP R     +++  Y+KLDDDGI+APG+R+SG+D++IG
Sbjct: 76  FYRAYTDQE-KRVGNHIVEQFEKPMRSDTLKLKHGTYEKLDDDGIVAPGVRISGEDIIIG 134

Query: 182 KTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRI 241
           KT  +  + +EL   TK   KRD ST LR++E GIVDQV+LT N DG +F K+R+R+ +I
Sbjct: 135 KTALIAPDAEELGQRTKLHIKRDVSTPLRSTENGIVDQVLLTTNADGLRFVKVRMRTTKI 194

Query: 242 PQIGDKFASRHGQKGTCGIQYRQE------------------------------------ 265
           PQIGDKFASRHGQKGT GI YRQE                                    
Sbjct: 195 PQIGDKFASRHGQKGTIGITYRQEDMPFTSEGVVPDLVINPHAIPSRMTIAHLIECQLSK 254

Query: 266 VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYY 325
           VSS +G  GDATPF D V V  +S LL+E GYQ RG EVM+NGHTGRK+ AQVFLGPTYY
Sbjct: 255 VSSLRGFEGDATPFTD-VTVDSVSKLLRESGYQSRGFEVMYNGHTGRKLVAQVFLGPTYY 313

Query: 326 QRLK 329
           QRL+
Sbjct: 314 QRLR 317


>gi|123979364|gb|ABM81507.1| RNA polymerase II second largest subunit [Myelochroa aurulenta]
          Length = 704

 Score =  336 bits (862), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 180/366 (49%), Positives = 228/366 (62%), Gaps = 84/366 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 386 MGVFLTNYQQRMDTMANILYYPQKPLATTR------------------------------ 415

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 416 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 460

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+R+Y D E KRIG    EQFEKP R     +++  YDKLDDDG++APG+RVSG+D++
Sbjct: 461 SLFYRAYTDQE-KRIGMSVVEQFEKPMRSDTLRLKHGTYDKLDDDGLVAPGVRVSGEDII 519

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK   KRD ST LR++E GIVDQV+L+ N +G +F K+R+R+ 
Sbjct: 520 IGKTAPIAPDAEELGQRTKLHIKRDTSTPLRSTENGIVDQVLLSTNAEGLRFVKVRMRTT 579

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 580 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGMVPDLIINPHAIPSRMTIAHLIECLL 639

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+  Q+FLGPT
Sbjct: 640 SKVSSLRGFEGDATPFTE-VTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVTQIFLGPT 698

Query: 324 YYQRLK 329
           YYQRL+
Sbjct: 699 YYQRLR 704


>gi|194320147|gb|ACF48296.1| DNA-dependent RNA polymerase II second largest subunit [Bacidia
           rubella]
          Length = 317

 Score =  336 bits (862), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 180/364 (49%), Positives = 228/364 (62%), Gaps = 84/364 (23%)

Query: 3   VYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSV 62
           V++TN+ VRMDT+A++LYYP KPL TTR                                
Sbjct: 1   VFLTNYDVRMDTMANILYYPQKPLATTR-------------------------------- 28

Query: 63  ILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSV 122
                        SME+L+FR+LPAG N+IVAI CY+GYNQEDSVI+N S+++RG FRS+
Sbjct: 29  -------------SMEFLKFRDLPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSL 75

Query: 123 FFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIG 181
           F+R+Y D E KR+G    EQFEKP R     +++  YDKLDDDGI+APG+RVSG+D++IG
Sbjct: 76  FYRAYTDQE-KRVGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIG 134

Query: 182 KTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRI 241
           KT  +  + +EL   TK   KRD ST LR++E GIVDQV+L+ N DG +F K+R+R+ ++
Sbjct: 135 KTAPIAADAEELGQRTKLHVKRDTSTPLRSTENGIVDQVLLSTNSDGLRFVKVRMRTTKV 194

Query: 242 PQIGDKFASRHGQKGTCGIQYRQE------------------------------------ 265
           PQIGDKFASRHGQKGT GI YRQE                                    
Sbjct: 195 PQIGDKFASRHGQKGTIGITYRQEDMPFTSEGIVPDLIINPHAIPSRMTIAHLIECQLSK 254

Query: 266 VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYY 325
           VSS +G  GDATPF D V V  +S LL+++GYQ RG EVM+NGHTGRK+ AQVFLGPTYY
Sbjct: 255 VSSLQGCEGDATPFTD-VTVDSVSKLLRDHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYY 313

Query: 326 QRLK 329
           QRL+
Sbjct: 314 QRLR 317


>gi|108885433|gb|ABG23223.1| RNA polymerase II second largest subunit, partial [Cintractia
           axicola]
          Length = 692

 Score =  336 bits (862), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 179/369 (48%), Positives = 227/369 (61%), Gaps = 84/369 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           + + I+NFH R DT+ HVL+YP KPL TTR                              
Sbjct: 371 VSINISNFHTRHDTMNHVLHYPQKPLGTTR------------------------------ 400

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI+CY+GYNQEDSVI+N S+++RG FR
Sbjct: 401 ---------------SMEHLKFRELPAGQNAIVAIMCYSGYNQEDSVIMNQSSIDRGLFR 445

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+++R Y  AE K++G  Q E+FEKPNR     M++  YDKLD DG+ APG RVSGDDV+
Sbjct: 446 SLYYRGYL-AEEKKVGVMQLEEFEKPNRDITIRMKHGTYDKLDADGLCAPGTRVSGDDVI 504

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  LP + +EL   TK  +K+D S  L+++E GI+DQV+LT N  G KF K+RVR+ 
Sbjct: 505 IGKTAPLPPDSEELGMRTKMHTKKDASIALKSTENGIIDQVLLTTNAAGNKFVKVRVRNS 564

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           RIPQ GDKFASRHGQKGT GI YRQE                                  
Sbjct: 565 RIPQTGDKFASRHGQKGTVGITYRQEDMPFSAEGLTPDIIINPHAIPSRMTIGHLVECLL 624

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             V++  G+ GDATPF + + V+ +S++L+  GYQ RG EVM+NGHTGRK+ AQV+LGPT
Sbjct: 625 SKVAALSGQEGDATPFTE-LTVEAVSSILRGLGYQSRGLEVMYNGHTGRKMQAQVYLGPT 683

Query: 324 YYQRLKHMV 332
           YYQRLKHMV
Sbjct: 684 YYQRLKHMV 692


>gi|46277306|gb|AAS86843.1| DNA-dependent RNA polymerase II [Marcelleina persoonii]
          Length = 560

 Score =  336 bits (862), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 180/362 (49%), Positives = 227/362 (62%), Gaps = 84/362 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 246 MGVFLTNYSERMDTMANILYYPQKPLATTR------------------------------ 275

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 276 ---------------SMEFLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 320

Query: 121 SVFFRSYKDAESKRIGDQE-EQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+FFRSY D E K+IG+   EQFEKP R     +++  YDKLDDDG++APG+R+SG+D++
Sbjct: 321 SLFFRSYTDQE-KKIGNSVLEQFEKPTRGNTLRLKHGTYDKLDDDGLVAPGVRISGEDII 379

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  N +EL   TK  +KRD ST LR++E GIVDQV++T+N +G KF K+R+R+ 
Sbjct: 380 IGKTAPIAPNTEELGQRTKYHTKRDASTPLRSTENGIVDQVLITVNGEGLKFVKVRMRTT 439

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           ++PQIGDKFASRHGQKGT GI YR E                                  
Sbjct: 440 KVPQIGDKFASRHGQKGTIGITYRNEDMPFTCEGVVPDLIINPHAIPSRMTIAHLIECQL 499

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + V V  +S LL+E GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 500 SKVSSLRGFEGDATPFTE-VTVDSVSKLLREMGYQSRGFEVMYNGHTGRKLVAQVFLGPT 558

Query: 324 YY 325
           YY
Sbjct: 559 YY 560


>gi|194320144|gb|ACF48294.1| DNA-dependent RNA polymerase II second largest subunit [Boreoplaca
           ultrafrigida]
          Length = 317

 Score =  336 bits (862), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 183/364 (50%), Positives = 227/364 (62%), Gaps = 84/364 (23%)

Query: 3   VYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSV 62
           V++TN+  RMDT+A++LYYP KPL TTR                                
Sbjct: 1   VFLTNYDQRMDTMANILYYPQKPLATTR-------------------------------- 28

Query: 63  ILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSV 122
                        SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FRS+
Sbjct: 29  -------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSL 75

Query: 123 FFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIG 181
           F+RSY D E KRIG    EQFEKP R     +++  YDKLDDDGI+APG+RVSG+D++IG
Sbjct: 76  FYRSYTDQE-KRIGMSVVEQFEKPMRSDTLRLKHGTYDKLDDDGIVAPGVRVSGEDIIIG 134

Query: 182 KTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRI 241
           KT  +  + +EL   TK   KRD ST LR++E GIVDQV+LT N +G +F K+R+R+ +I
Sbjct: 135 KTAPIAPDAEELGQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKI 194

Query: 242 PQIGDKFASRHGQKGTCGIQYRQE------------------------------------ 265
           PQIGDKFASRHGQKGT GI YRQE                                    
Sbjct: 195 PQIGDKFASRHGQKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSK 254

Query: 266 VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYY 325
           VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPTYY
Sbjct: 255 VSSLRGFEGDATPFTE-VTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYY 313

Query: 326 QRLK 329
           QRL+
Sbjct: 314 QRLR 317


>gi|194320243|gb|ACF48358.1| DNA-dependent RNA polymerase II second largest subunit [Sticta
           beauvoisii]
          Length = 317

 Score =  336 bits (862), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 183/364 (50%), Positives = 227/364 (62%), Gaps = 84/364 (23%)

Query: 3   VYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSV 62
           V++TN+  RMDT+A++LYYP KPL TTR                                
Sbjct: 1   VFLTNYDQRMDTMANILYYPQKPLATTR-------------------------------- 28

Query: 63  ILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSV 122
                        SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FRS+
Sbjct: 29  -------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSL 75

Query: 123 FFRSYKDAESKRIGDQE-EQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIG 181
           F+RSY D E KRIG    EQFEKP R     +++  YDKLDDDGI+APG+RVSG+D++IG
Sbjct: 76  FYRSYTDQE-KRIGMAVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIG 134

Query: 182 KTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRI 241
           KT  +  + +EL   TK   KRD ST LR++E GIVDQV+LT N +G +F K+R+R+ +I
Sbjct: 135 KTAPIAPDAEELGQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKI 194

Query: 242 PQIGDKFASRHGQKGTCGIQYRQE------------------------------------ 265
           PQIGDKFASRHGQKGT GI YRQE                                    
Sbjct: 195 PQIGDKFASRHGQKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSK 254

Query: 266 VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYY 325
           VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPTYY
Sbjct: 255 VSSLRGFEGDATPFTE-VTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYY 313

Query: 326 QRLK 329
           QRL+
Sbjct: 314 QRLR 317


>gi|123979394|gb|ABM81522.1| RNA polymerase II second largest subunit [Thelotrema lepadinum]
          Length = 703

 Score =  336 bits (862), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 181/366 (49%), Positives = 229/366 (62%), Gaps = 84/366 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TNF  RMDT+A++LYYP KPL TTR                              
Sbjct: 385 MGVFLTNFDERMDTMANILYYPQKPLATTR------------------------------ 414

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 415 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 459

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+R+Y + E KR+G    EQFEKP R     +++  Y+KLDDDG+IAPG+RVSG+DV+
Sbjct: 460 SLFYRAYVEQE-KRVGMSLVEQFEKPLRSETLRLKHGTYEKLDDDGLIAPGVRVSGEDVI 518

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK  +KRD ST LR++E GIVD+V+LT N +G KF K+R+R+ 
Sbjct: 519 IGKTAPIAPDTEELGQRTKLHNKRDASTPLRSTENGIVDKVLLTTNQEGLKFVKVRMRTT 578

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           ++PQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 579 KVPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDLIINPHAIPSRMTIAHLIECQL 638

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVF GPT
Sbjct: 639 SKVSSLRGFEGDATPFTE-VTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLRAQVFFGPT 697

Query: 324 YYQRLK 329
           YYQRL+
Sbjct: 698 YYQRLR 703


>gi|194320223|gb|ACF48345.1| DNA-dependent RNA polymerase II second largest subunit [Squamarina
           cartilaginea]
          Length = 317

 Score =  336 bits (862), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 180/364 (49%), Positives = 228/364 (62%), Gaps = 84/364 (23%)

Query: 3   VYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSV 62
           V++TN+ VRMDT+A++LYYP KPL TTR                                
Sbjct: 1   VFLTNYDVRMDTMANILYYPQKPLATTR-------------------------------- 28

Query: 63  ILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSV 122
                        SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FRS+
Sbjct: 29  -------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSL 75

Query: 123 FFRSYKDAESKRIGDQE-EQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIG 181
           F+R+Y D E KRIG    E+FEKP R     +++  YDKLD+DGI+APG+RVSG+D++IG
Sbjct: 76  FYRAYTDQE-KRIGVAVVEEFEKPMRSDTLKLKHGTYDKLDEDGIVAPGVRVSGEDIIIG 134

Query: 182 KTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRI 241
           KT  +  + +EL   TK   KRD ST LR++E GIVDQV+L+ N DG +F K+R+R+ ++
Sbjct: 135 KTAPIAPDAEELGQRTKLHVKRDASTPLRSTENGIVDQVLLSTNADGLRFAKVRMRTTKV 194

Query: 242 PQIGDKFASRHGQKGTCGIQYRQE------------------------------------ 265
           PQIGDKFASRHGQKGT GI YRQE                                    
Sbjct: 195 PQIGDKFASRHGQKGTIGITYRQEDMPFTREGVVPDLIINPHAIPSRMTIAHLIECQLSK 254

Query: 266 VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYY 325
           VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPTYY
Sbjct: 255 VSSLRGFEGDATPFTE-VTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYY 313

Query: 326 QRLK 329
           QRL+
Sbjct: 314 QRLR 317


>gi|52699802|gb|AAU86963.1| DNA-dependent RNA polymerase II second largest subunit [Diaporthe
           phaseolorum]
          Length = 726

 Score =  336 bits (862), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 182/373 (48%), Positives = 226/373 (60%), Gaps = 84/373 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG         MDT+A++LYYP KPL TTR                              
Sbjct: 399 MGXXXXXXXXXMDTMANILYYPQKPLATTR------------------------------ 428

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 429 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 473

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+FFRSY D+E KR+G +  E FEKP R     +++  YDKLDDDGIIAPG+RVSG+D++
Sbjct: 474 SLFFRSYTDSE-KRVGINVVESFEKPFRSDTLRLKHGTYDKLDDDGIIAPGVRVSGEDII 532

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  +  EL   T +  KRD ST LR++E+GI+D V++T N DG ++ K+RVR+ 
Sbjct: 533 IGKTSPINPDNQELGQRTAQHVKRDASTPLRSTESGIIDSVVVTTNQDGLRYVKVRVRTT 592

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT G+ YRQE                                  
Sbjct: 593 KIPQIGDKFASRHGQKGTIGVTYRQEDMPFSREGVTPDIIINPHAIPSRMTIAHLIECLL 652

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VS+ KG  GDATPF D V V  +S LL  +GYQ RG EV++NGHTGRK+ AQVF GPT
Sbjct: 653 SKVSTLKGMEGDATPFTD-VTVDSVSDLLHAHGYQSRGFEVLYNGHTGRKLKAQVFFGPT 711

Query: 324 YYQRLKHMVDDKI 336
           YYQRL+HMVDDKI
Sbjct: 712 YYQRLRHMVDDKI 724


>gi|56694336|gb|AAW22908.1| RNA polymerase II second largest subunit [Dacrydium cupressinum]
          Length = 498

 Score =  336 bits (861), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 177/362 (48%), Positives = 229/362 (63%), Gaps = 86/362 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+ +RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 186 MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA----------------------------- 216

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 217 ----------------MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 260

Query: 121 SVFFRSYKDAESKRIGDQ-EEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+FFRSY+D E KR+G   +E+F +PNR+   GMR+  YDKLDDDG+  PG RVSG+DV+
Sbjct: 261 SLFFRSYRD-EEKRMGTLVKEEFGRPNRENTTGMRHGSYDKLDDDGLAPPGTRVSGEDVI 319

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT   P +++E      ++++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RSV
Sbjct: 320 IGKTT--PVSQEESGNQISKYTRRDQSTSLRHSESGMVDQVLLTTNQDGLRFVKVRMRSV 377

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           R+PQIGDKF+SRHGQKGT G+ Y QE                                  
Sbjct: 378 RVPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIM 437

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGRK+NA +FLGPT
Sbjct: 438 GKVAAHMGKEGDATPFTD-VTVDSISKALHKCGYQMRGFETMYNGHTGRKLNAMIFLGPT 496

Query: 324 YY 325
           YY
Sbjct: 497 YY 498


>gi|194320212|gb|ACF48338.1| DNA-dependent RNA polymerase II second largest subunit [Lecidoma
           demissum]
          Length = 317

 Score =  336 bits (861), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 183/364 (50%), Positives = 227/364 (62%), Gaps = 84/364 (23%)

Query: 3   VYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSV 62
           V++TN+  RMDT+A++LYYP KPL TTR                                
Sbjct: 1   VFLTNYDQRMDTMANILYYPQKPLATTR-------------------------------- 28

Query: 63  ILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSV 122
                        SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FRS+
Sbjct: 29  -------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSL 75

Query: 123 FFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIG 181
           F+RSY D E KRIG    EQFEKP R     +++  YDKLDDDGI+APG+RVSG+D++IG
Sbjct: 76  FYRSYTDQE-KRIGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDMIIG 134

Query: 182 KTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRI 241
           KT  +  + +EL   TK   KRD ST LR++E GIVDQV+LT N +G +F K+R+R+ +I
Sbjct: 135 KTAPIAPDAEELGQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKI 194

Query: 242 PQIGDKFASRHGQKGTCGIQYRQE------------------------------------ 265
           PQIGDKFASRHGQKGT GI YRQE                                    
Sbjct: 195 PQIGDKFASRHGQKGTIGITYRQEDMPFASEGVVPDLIINPHAIPSRMTIAHLIECQLSK 254

Query: 266 VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYY 325
           VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPTYY
Sbjct: 255 VSSLRGFEGDATPFTE-VTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYY 313

Query: 326 QRLK 329
           QRL+
Sbjct: 314 QRLR 317


>gi|194320245|gb|ACF48359.1| DNA-dependent RNA polymerase II second largest subunit
           [Fuscopannaria ignobilis]
          Length = 317

 Score =  336 bits (861), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 182/364 (50%), Positives = 227/364 (62%), Gaps = 84/364 (23%)

Query: 3   VYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSV 62
           V++TN+  RMDT+A++LYYP KPL TTR                                
Sbjct: 1   VFLTNYDQRMDTMANILYYPQKPLATTR-------------------------------- 28

Query: 63  ILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSV 122
                        SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FRS+
Sbjct: 29  -------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSL 75

Query: 123 FFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIG 181
           F+RSY D E KRIG    EQFEKP R     +++  YDKLDDDGI+APG+RVSG+D++IG
Sbjct: 76  FYRSYTDQE-KRIGMSIVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIG 134

Query: 182 KTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRI 241
           KT  +  + +EL   TK   KRD ST LR++E GIVDQV+LT N +G +F K+R+R+ +I
Sbjct: 135 KTAPIAPDAEELGQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKI 194

Query: 242 PQIGDKFASRHGQKGTCGIQYRQE------------------------------------ 265
           PQIGDKFASRHGQKGT GI YRQE                                    
Sbjct: 195 PQIGDKFASRHGQKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSK 254

Query: 266 VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYY 325
           VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQ+FLGPTYY
Sbjct: 255 VSSLRGYEGDATPFTE-VTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQIFLGPTYY 313

Query: 326 QRLK 329
           QRL+
Sbjct: 314 QRLR 317


>gi|354992113|gb|AER45763.1| RNA polymerase II second largest subunit [Pleurotus ostreatus]
          Length = 687

 Score =  336 bits (861), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 177/366 (48%), Positives = 227/366 (62%), Gaps = 82/366 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+++TNF +RMDT+A++LYYP KPL TTR                              
Sbjct: 368 MGIFLTNFLIRMDTMANILYYPQKPLATTR------------------------------ 397

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+ R+LPAG N+IVAILCY+GYNQEDSVI+N S+V+RG FR
Sbjct: 398 ---------------SMEYLKSRKLPAGQNAIVAILCYSGYNQEDSVIMNQSSVDRGLFR 442

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP+R     M++  YDKL++DG+IAPG  V G+D++I
Sbjct: 443 SMYYRSYMDLEKKSGIQQLEEFEKPSRDNTLRMKHGTYDKLENDGLIAPGTGVVGEDIII 502

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E GIVDQV++T N +G KF KIRVRS R
Sbjct: 503 GKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVDQVLITTNHEGQKFVKIRVRSTR 562

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 563 IPQIGDKFASRHGQKGTIGITYRQEDMPFTCEGIVPDIIINPHAIPSRMTIGHLVECLLS 622

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D + V+ +S  L++ GYQ RG EVM++GHTGRK+ AQV+LGPTY
Sbjct: 623 KVATLIGNEGDATPFTD-LTVESVSAFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTY 681

Query: 325 YQRLKH 330
           YQRLKH
Sbjct: 682 YQRLKH 687


>gi|354992141|gb|AER45777.1| RNA polymerase II second largest subunit [Pleurotus ostreatus]
          Length = 687

 Score =  335 bits (860), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 177/366 (48%), Positives = 226/366 (61%), Gaps = 82/366 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+++TNF +RMDT+A++LYYP KPL TTR                              
Sbjct: 368 MGIFLTNFLIRMDTMANILYYPQKPLATTR------------------------------ 397

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+V+RG FR
Sbjct: 398 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSVDRGLFR 442

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP+R     M++  YDKL++DG+IAPG  V G+D++I
Sbjct: 443 SMYYRSYMDLEKKSGIQQLEEFEKPSRDNTLRMKHGTYDKLENDGLIAPGTGVVGEDIII 502

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + + L   T+  ++RD ST L+++E GIVDQV++T N +G KF KIRVRS R
Sbjct: 503 GKTAPIPPDSEGLGQRTRTHTRRDVSTPLKSTENGIVDQVLITTNHEGQKFVKIRVRSTR 562

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 563 IPQIGDKFASRHGQKGTIGITYRQEDMPFTCEGIVPDIIINPHAIPSRMTIGHLVECLLS 622

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D + V+ +S  L++ GYQ RG EVM++ HTGRK+ AQV+LGPTY
Sbjct: 623 KVATLIGNEGDATPFTD-LTVESVSAFLRQKGYQSRGLEVMYHSHTGRKLQAQVYLGPTY 681

Query: 325 YQRLKH 330
           YQRLKH
Sbjct: 682 YQRLKH 687


>gi|68131844|gb|AAY85200.1| RNA polymerase II second largest subunit [Coriaria sarmentosa]
          Length = 952

 Score =  335 bits (860), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 179/365 (49%), Positives = 224/365 (61%), Gaps = 85/365 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+  RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 636 MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA----------------------------- 666

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGI +IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 667 ----------------MEHLHFRQLPAGIYAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 710

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY+D E K     +E F +P+R    GMR+  YDKLDDDG+  PG RVSG+DV+I
Sbjct: 711 SLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 770

Query: 181 GKTITLPENEDELEG-TTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           GKT   P  +DE +G    R+++ D S  LR+SETGIVDQV+LT N DG +F K+RVRSV
Sbjct: 771 GKTT--PIAQDEAQGQAAARYTRSDHSISLRHSETGIVDQVLLTTNADGLRFVKVRVRSV 828

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           RIPQIGDKF+SRHGQKGT G+ Y QE                                  
Sbjct: 829 RIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIM 888

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGR+++A +FLGPT
Sbjct: 889 GKVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRQLSAMIFLGPT 947

Query: 324 YYQRL 328
           YYQRL
Sbjct: 948 YYQRL 952


>gi|45545311|gb|AAS67503.1| DNA-dependent RNA polymerase II second largest subunit, partial
           [Candida parapsilosis]
          Length = 892

 Score =  335 bits (860), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 173/361 (47%), Positives = 225/361 (62%), Gaps = 82/361 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+ VRMDT+A++LYYP KPL TTR+                             
Sbjct: 578 MGVFLTNYAVRMDTMANILYYPQKPLATTRA----------------------------- 608

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L+FRELPAG N+IVAI CY+GYNQEDS+I+N S+++RG+FR
Sbjct: 609 ----------------MEHLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGFFR 652

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY D E ++     E FEKP+R     +++  Y+KLDDDG+IAPG+RVSG+D++I
Sbjct: 653 SLFFRSYMDLEKRQGMKALETFEKPSRSDTLRLKHGTYEKLDDDGLIAPGVRVSGEDIII 712

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  +KRD ST LR++E+GIVDQV+LT N DG KF K+R+R+ +
Sbjct: 713 GKTTPIPPDTEELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKVRMRTTK 772

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           +PQIGDKFASRHGQKGT G+ YR E                                   
Sbjct: 773 VPQIGDKFASRHGQKGTIGVTYRHEDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLS 832

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            VSS  G  GDA+PF D V  + IS LL+E+GYQ RG EVM+NGHTG+K+ AQVF GPTY
Sbjct: 833 KVSSLSGLEGDASPFTD-VTAEAISKLLREHGYQSRGFEVMYNGHTGKKLMAQVFFGPTY 891

Query: 325 Y 325
           Y
Sbjct: 892 Y 892


>gi|194320215|gb|ACF48340.1| DNA-dependent RNA polymerase II second largest subunit
           [Protoblastenia calva]
          Length = 317

 Score =  335 bits (860), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 180/364 (49%), Positives = 227/364 (62%), Gaps = 84/364 (23%)

Query: 3   VYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSV 62
           V++TN+  RMDT+A++LYYP KPL TTR                                
Sbjct: 1   VFLTNYDQRMDTMANILYYPQKPLATTR-------------------------------- 28

Query: 63  ILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSV 122
                        SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FRS+
Sbjct: 29  -------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSL 75

Query: 123 FFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIG 181
           F+R+Y D E KR+G    EQFEKP R     +++  YDKLDDDGI+APG+RVSG+D++IG
Sbjct: 76  FYRAYTDQE-KRVGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIG 134

Query: 182 KTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRI 241
           KT  +  + +EL   TK   KRD ST LR++E GIVDQV+L+ N DG +F K+R+R+ ++
Sbjct: 135 KTAPISADAEELGQRTKLHVKRDTSTPLRSTENGIVDQVLLSTNSDGLRFVKVRMRTTKV 194

Query: 242 PQIGDKFASRHGQKGTCGIQYRQE------------------------------------ 265
           PQIGDKFASRHGQKGT GI YRQE                                    
Sbjct: 195 PQIGDKFASRHGQKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSK 254

Query: 266 VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYY 325
           VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPTYY
Sbjct: 255 VSSLRGFEGDATPFTE-VTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYY 313

Query: 326 QRLK 329
           QRL+
Sbjct: 314 QRLR 317


>gi|92090854|gb|ABE73203.1| RNA polymerase II second largest subunit, partial [Hydropus cf.
           scabripes PBM 2513]
          Length = 687

 Score =  335 bits (859), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 174/366 (47%), Positives = 225/366 (61%), Gaps = 82/366 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+++TNF +RMDT+A++L+YP KPL TTR                              
Sbjct: 368 MGIFLTNFLIRMDTMANILFYPQKPLATTR------------------------------ 397

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 398 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 442

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D   K   +  E+F KP+R+    M++  YDKL+DDG+IAPG  V G+D++I
Sbjct: 443 SIYYRSYMDLAKKVGQNAGEEFGKPSRENTLRMKHGTYDKLEDDGLIAPGTGVVGEDIII 502

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P   +EL   T + +KRD ST L+++E G VDQV++T N DG  F K+RVRS+R
Sbjct: 503 GKTAPIPPESEELGQRTSKHTKRDVSTPLKSTENGTVDQVLITTNSDGQTFVKVRVRSIR 562

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 563 IPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLS 622

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D + V+ +S  L++ GYQ RG EVM++GHTGRK+ AQV+LGPTY
Sbjct: 623 KVATLIGNEGDATPFTD-LTVESVSEYLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPTY 681

Query: 325 YQRLKH 330
           YQRLKH
Sbjct: 682 YQRLKH 687


>gi|194320171|gb|ACF48312.1| DNA-dependent RNA polymerase II second largest subunit
           [Hypocenomyce scalaris]
          Length = 317

 Score =  335 bits (859), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 181/364 (49%), Positives = 228/364 (62%), Gaps = 84/364 (23%)

Query: 3   VYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSV 62
           V++TN+  RMDT++++LYYP KPL TTR                                
Sbjct: 1   VFLTNYEQRMDTMSNILYYPQKPLATTR-------------------------------- 28

Query: 63  ILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSV 122
                        SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FRS+
Sbjct: 29  -------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSL 75

Query: 123 FFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIG 181
           F+R+Y D E KRIG    EQFEKP R     +++  YDKLDDDGI+APG+RVSG+D++IG
Sbjct: 76  FYRAYTDQE-KRIGMSVVEQFEKPMRSDTLRLKHGTYDKLDDDGIVAPGVRVSGEDIIIG 134

Query: 182 KTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRI 241
           KT  +  + +EL   TK   KRD ST LR++E+GIVDQV+LT N +G +F K+R+R+ +I
Sbjct: 135 KTAPIAPDAEELGQRTKLHVKRDVSTPLRSTESGIVDQVLLTTNAEGLRFVKVRMRTTKI 194

Query: 242 PQIGDKFASRHGQKGTCGIQYRQE------------------------------------ 265
           PQIGDKFASRHGQKGT GI YRQE                                    
Sbjct: 195 PQIGDKFASRHGQKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSK 254

Query: 266 VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYY 325
           VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPTYY
Sbjct: 255 VSSLRGFEGDATPFTE-VTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYY 313

Query: 326 QRLK 329
           QRL+
Sbjct: 314 QRLR 317


>gi|299849854|gb|ADJ57173.1| RNA polymerase II second largest subunit [Scytalidium cuboideum]
          Length = 321

 Score =  335 bits (859), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 179/368 (48%), Positives = 227/368 (61%), Gaps = 84/368 (22%)

Query: 2   GVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDS 61
           GV++TNF  RMDT+A++LYYP KPL TTR                               
Sbjct: 1   GVFLTNFDQRMDTMANILYYPQKPLATTR------------------------------- 29

Query: 62  VILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRS 121
                         SME+L+FRELPAG N+IVAI CY+GYN EDSVI+N S+++RG FRS
Sbjct: 30  --------------SMEFLKFRELPAGQNAIVAIACYSGYNXEDSVIMNQSSIDRGLFRS 75

Query: 122 VFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           +F+R+Y D E KRIG +  EQFEKP R     +++  YDKLDDDGIIAPG+RVSG+D++I
Sbjct: 76  LFYRAYTDQE-KRIGMNVVEQFEKPFRADTLKLKHGTYDKLDDDGIIAPGVRVSGEDIII 134

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +  + +EL   TK   KRD ST LR++E GIVDQV++T N +G +F K+R+R+ +
Sbjct: 135 GKTAPIAPDSEELGQRTKAHVKRDASTPLRSTENGIVDQVLITTNAEGLRFVKVRMRTTK 194

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 195 IPQIGDKFASRHGQKGTIGITYRQEDMPFTRQGIVPDLIINPHAIPXRMTIAHLIECQLS 254

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            VS+ +G  GD TPF + V V  +S LL+ +GYQ RG E+M++GHTGRK+ A VF GPTY
Sbjct: 255 KVSTLRGLEGDXTPFTE-VTVDSVSKLLRAHGYQSRGFEIMYHGHTGRKLKAXVFFGPTY 313

Query: 325 YQRLKHMV 332
           YQRL+HMV
Sbjct: 314 YQRLRHMV 321


>gi|123979386|gb|ABM81518.1| RNA polymerase II second largest subunit [Solorina crocea]
          Length = 701

 Score =  335 bits (859), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 180/366 (49%), Positives = 227/366 (62%), Gaps = 84/366 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+  RMDT+A++LYYP KP+ TTR                              
Sbjct: 383 MGVFLTNYDQRMDTMANILYYPQKPMATTR------------------------------ 412

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 413 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 457

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+RSY D E KRIG    EQFEKP R     +++  YDKLD+DGI+APG+RVSG+D++
Sbjct: 458 SLFYRSYTDQE-KRIGMSIVEQFEKPMRTDTLKLKHGTYDKLDEDGIVAPGVRVSGEDMI 516

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +P + +EL   TK   KRD ST LR++E GIVDQV+LT N +G +F K+R+R+ 
Sbjct: 517 IGKTAPIPPDAEELGQRTKLHIKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTT 576

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 577 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGVVPDIIINPHAIPSRMTIAHLIECQL 636

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VS+ +G  GDATPF + V V  +S +LQ +GYQ RG EVM+N HTG K+ AQVFLGPT
Sbjct: 637 SKVSALRGFEGDATPFTE-VTVDSVSKILQAHGYQSRGFEVMYNAHTGHKLVAQVFLGPT 695

Query: 324 YYQRLK 329
           YYQRL+
Sbjct: 696 YYQRLR 701


>gi|404250357|gb|AFR54081.1| RNA polymerase II second largest subunit, partial [Xylogone
           sphaerospora]
          Length = 706

 Score =  335 bits (859), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 179/365 (49%), Positives = 227/365 (62%), Gaps = 84/365 (23%)

Query: 3   VYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSV 62
           V++TNF  RMDT+A++LYYP KPL TTR                                
Sbjct: 389 VFLTNFDQRMDTMANILYYPQKPLATTR-------------------------------- 416

Query: 63  ILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSV 122
                        SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FRS+
Sbjct: 417 -------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSL 463

Query: 123 FFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIG 181
           F+R+Y D E KRIG +  EQFEKP R     +++  YDKLDDDGIIAPG+RVSG+D++IG
Sbjct: 464 FYRAYTDQE-KRIGMNVVEQFEKPFRADTLKLKHGTYDKLDDDGIIAPGVRVSGEDIIIG 522

Query: 182 KTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRI 241
           KT  +  + +EL   TK   KRD ST LR++E GIVDQV++T N +G +F K+R+R+ +I
Sbjct: 523 KTAPIAPDSEELGQRTKAHVKRDASTPLRSTENGIVDQVLITTNAEGLRFVKVRMRTTKI 582

Query: 242 PQIGDKFASRHGQKGTCGIQYRQE------------------------------------ 265
           PQIGDKFASRHGQKGT GI YRQE                                    
Sbjct: 583 PQIGDKFASRHGQKGTIGITYRQEDMPFTRQGIVPDLIINPHAIPSRMTIAHLIECQLSK 642

Query: 266 VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYY 325
           VS+ +G  GDATPF + V V  +S LL+ +GYQ RG E+M++GHTGRK+ AQVF GPTYY
Sbjct: 643 VSTLRGLEGDATPFTE-VTVDSVSKLLRAHGYQSRGFEIMYHGHTGRKLRAQVFFGPTYY 701

Query: 326 QRLKH 330
           QRL+H
Sbjct: 702 QRLRH 706


>gi|194320220|gb|ACF48343.1| DNA-dependent RNA polymerase II second largest subunit [Psora
           rubiformis]
          Length = 317

 Score =  335 bits (859), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 181/363 (49%), Positives = 226/363 (62%), Gaps = 84/363 (23%)

Query: 3   VYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSV 62
           VY+TN+  RMDT+A++LYYP KPL TTR                                
Sbjct: 1   VYLTNYDQRMDTMANILYYPQKPLATTR-------------------------------- 28

Query: 63  ILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSV 122
                        SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FRS+
Sbjct: 29  -------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSL 75

Query: 123 FFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIG 181
           F+R+Y D E KR+G    EQFEKP R     +++  YDKLDDDG++APG+RVSG+D++IG
Sbjct: 76  FYRAYTDQE-KRVGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGLVAPGVRVSGEDIIIG 134

Query: 182 KTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRI 241
           KT  +  + +EL   TK   KRD ST LR++E GIVDQV+L+ N DG +F K+R+R+ +I
Sbjct: 135 KTAPISPDAEELGQRTKLHIKRDTSTPLRSTENGIVDQVLLSTNSDGLRFVKVRMRTTKI 194

Query: 242 PQIGDKFASRHGQKGTCGIQYRQE------------------------------------ 265
           PQIGDKFASRHGQKGT GI YRQE                                    
Sbjct: 195 PQIGDKFASRHGQKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSK 254

Query: 266 VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYY 325
           VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPTYY
Sbjct: 255 VSSLRGFEGDATPFTE-VTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYY 313

Query: 326 QRL 328
           QRL
Sbjct: 314 QRL 316


>gi|92090856|gb|ABE73204.1| RNA polymerase II second largest subunit [Resinicium bicolor]
          Length = 551

 Score =  335 bits (858), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 174/359 (48%), Positives = 223/359 (62%), Gaps = 82/359 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF VRMDT+A++LYYP KPL TTR                              
Sbjct: 239 MGIYLTNFQVRMDTMANILYYPQKPLATTR------------------------------ 268

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 269 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 313

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP R+T   M++  YDK++DDG+IAPG  V G+D++I
Sbjct: 314 SMYYRSYMDLEKKSGVQQLEEFEKPTRETTLRMKHGTYDKIEDDGLIAPGTNVRGEDIII 373

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  +KRD ST L+++E+GIVDQV++T N DG KF K+RVRS R
Sbjct: 374 GKTAPIPPDSEELGQRTRTHTKRDVSTPLKSTESGIVDQVLITTNHDGQKFVKVRVRSTR 433

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 434 IPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIVINPHAIPSRMTIGHLVECLLS 493

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
            V++  G  GDATPF D + V+ +S  L++ GYQ RG E+M++GHTGRK+ AQV+LGPT
Sbjct: 494 KVATLIGNEGDATPFTD-LTVESVSKFLRQRGYQSRGLEIMYHGHTGRKLQAQVYLGPT 551


>gi|194320191|gb|ACF48325.1| DNA-dependent RNA polymerase II second largest subunit
           [Fuscopannaria mediterranea]
          Length = 317

 Score =  335 bits (858), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 182/364 (50%), Positives = 226/364 (62%), Gaps = 84/364 (23%)

Query: 3   VYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSV 62
           V++TN+  RMDT+A++LYYP KPL TTR                                
Sbjct: 1   VFLTNYDQRMDTMANILYYPQKPLATTR-------------------------------- 28

Query: 63  ILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSV 122
                        SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FRS+
Sbjct: 29  -------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSL 75

Query: 123 FFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIG 181
           F+RSY D E KRIG    EQFEKP R     +++  YDKLDDDGI+APG+RVSG+D++ G
Sbjct: 76  FYRSYTDQE-KRIGMSIVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIITG 134

Query: 182 KTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRI 241
           KT  +  + +EL   TK   KRD ST LR++E GIVDQV+LT N +G +F K+R+R+ +I
Sbjct: 135 KTAPIAPDAEELGQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKI 194

Query: 242 PQIGDKFASRHGQKGTCGIQYRQE------------------------------------ 265
           PQIGDKFASRHGQKGT GI YRQE                                    
Sbjct: 195 PQIGDKFASRHGQKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSK 254

Query: 266 VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYY 325
           VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPTYY
Sbjct: 255 VSSLRGYEGDATPFTE-VTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYY 313

Query: 326 QRLK 329
           QRL+
Sbjct: 314 QRLR 317


>gi|123979390|gb|ABM81520.1| RNA polymerase II second largest subunit [Fissurina insidiosa]
          Length = 703

 Score =  335 bits (858), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 180/366 (49%), Positives = 228/366 (62%), Gaps = 84/366 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+++TNF  RMDT+A+VLYYP KPL TTR                              
Sbjct: 385 MGIFLTNFDERMDTMANVLYYPQKPLATTR------------------------------ 414

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 415 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 459

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+R+Y + E KR+G    EQFEKP R     +++  Y+KLD+DG+IAPG+RVSG+D++
Sbjct: 460 SLFYRAYIEQE-KRVGMSLVEQFEKPLRSETLRLKHGTYEKLDEDGLIAPGVRVSGEDII 518

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK  +KRD ST LR++E GIVD+ +LT N +G KF K+R+R+ 
Sbjct: 519 IGKTAPIAPDAEELGQRTKLHTKRDASTPLRSTENGIVDKALLTTNQEGLKFVKVRMRTT 578

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 579 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDLIINPHAIPSRMTIAHLIECQL 638

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF D V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVF GPT
Sbjct: 639 SKVSSLRGFEGDATPFTD-VTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLRAQVFFGPT 697

Query: 324 YYQRLK 329
           YYQRL+
Sbjct: 698 YYQRLR 703


>gi|194320156|gb|ACF48302.1| DNA-dependent RNA polymerase II second largest subunit [Peltigera
           sp. AFTOL 1838]
          Length = 332

 Score =  334 bits (857), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 179/365 (49%), Positives = 226/365 (61%), Gaps = 84/365 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+  RMDT+A++LYYP KP+ TTR                              
Sbjct: 15  MGVFLTNYDQRMDTMANILYYPQKPMATTR------------------------------ 44

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 45  ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 89

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+RSY D E KRIG    EQFEKP R     +++  Y+KLDDDGI+APG+RVSG+D++
Sbjct: 90  SLFYRSYTDQE-KRIGMSIVEQFEKPMRTDTLRLKHGTYEKLDDDGIVAPGVRVSGEDMI 148

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +P + +EL   TK   KRD ST LR++E GIVDQV+LT N +G +F K+R+R+ 
Sbjct: 149 IGKTAPIPPDSEELGQRTKMHIKRDASTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTT 208

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 209 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQL 268

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VS+ +G  GDATPF + V V  +S +L+ +GYQ RG EVM+N HTG K+ AQVFLGPT
Sbjct: 269 SKVSALRGFEGDATPFTE-VTVDSVSKILRAHGYQSRGFEVMYNAHTGHKLMAQVFLGPT 327

Query: 324 YYQRL 328
           YYQRL
Sbjct: 328 YYQRL 332


>gi|45545339|gb|AAS67517.1| DNA-dependent RNA polymerase II second largest subunit, partial
           [Alyxoria varia]
          Length = 894

 Score =  334 bits (856), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 178/367 (48%), Positives = 224/367 (61%), Gaps = 84/367 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV +TN+ +RM+T+ +VLYYP KPL TTR                              
Sbjct: 575 MGVALTNYALRMETMMNVLYYPQKPLATTR------------------------------ 604

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 605 ---------------SMEYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 649

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+R+Y + E KRIG +  EQFEKP R     ++   YDKLDDDG++APG+RVSGDD++
Sbjct: 650 SLFYRAYTEQE-KRIGVNVLEQFEKPMRADTLRLKGGTYDKLDDDGVVAPGVRVSGDDII 708

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  +  EL   T   +KRD ST LR++E GIVDQV+ T N +G +F K+R R+ 
Sbjct: 709 IGKTAPIAADAKELGQKTTMHTKRDVSTPLRSTENGIVDQVLFTTNTEGLRFVKVRTRTT 768

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           ++PQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 769 KVPQIGDKFASRHGQKGTIGITYRQEDMPFTREGLVPDIIINPHAIPSRMTIAHLVECLL 828

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             V S +G+ GDATPF D V V+ +S LL   GYQ RG EVM+NGHTG+K+ AQ+FLGPT
Sbjct: 829 SKVGSLEGKEGDATPFTD-VTVESVSKLLANNGYQQRGFEVMYNGHTGKKLRAQIFLGPT 887

Query: 324 YYQRLKH 330
           YYQRL+H
Sbjct: 888 YYQRLRH 894


>gi|194320174|gb|ACF48314.1| DNA-dependent RNA polymerase II second largest subunit [Lecidea
           silacea]
          Length = 317

 Score =  334 bits (856), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 182/364 (50%), Positives = 227/364 (62%), Gaps = 84/364 (23%)

Query: 3   VYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSV 62
           V++TN+  RMDT+A++LYYP KPL TTR                                
Sbjct: 1   VFLTNYGQRMDTMANILYYPQKPLATTR-------------------------------- 28

Query: 63  ILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSV 122
                        SME+L+FRELPAG N+IVAI  Y+GYNQEDSVI+N S+++RG FRS+
Sbjct: 29  -------------SMEFLKFRELPAGQNAIVAIAVYSGYNQEDSVIMNQSSIDRGLFRSL 75

Query: 123 FFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIG 181
           F+RSY D E KRIG    E+FEKP R     +++ IYDKLDDDGI+APG+RVSG+D++IG
Sbjct: 76  FYRSYTDQE-KRIGMSAVEEFEKPMRSDTLKLKHGIYDKLDDDGIVAPGVRVSGEDIIIG 134

Query: 182 KTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRI 241
           KT  +  + +EL   TK   KRD ST LR++E GIVDQV+LT N +G +F K+R+R+ +I
Sbjct: 135 KTAPIAPDAEELGLRTKLHMKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKI 194

Query: 242 PQIGDKFASRHGQKGTCGIQYRQE------------------------------------ 265
           PQIGDKFASRHGQKGT GI YRQE                                    
Sbjct: 195 PQIGDKFASRHGQKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSK 254

Query: 266 VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYY 325
           VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPTYY
Sbjct: 255 VSSLRGFEGDATPFTE-VTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYY 313

Query: 326 QRLK 329
           QRL+
Sbjct: 314 QRLR 317


>gi|194320199|gb|ACF48330.1| DNA-dependent RNA polymerase II second largest subunit [Imshaugia
           aleurites]
          Length = 317

 Score =  334 bits (856), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 180/364 (49%), Positives = 226/364 (62%), Gaps = 84/364 (23%)

Query: 3   VYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSV 62
           V++TNF  RMDT+A++LYYP KPL TTR                                
Sbjct: 1   VFLTNFEQRMDTMANILYYPQKPLATTR-------------------------------- 28

Query: 63  ILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSV 122
                        SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FRS+
Sbjct: 29  -------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSL 75

Query: 123 FFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIG 181
           F+R+Y D E KRIG    EQFEKP R     +++  YDKLDDDG++APG+RVSG+D++IG
Sbjct: 76  FYRAYTDQE-KRIGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGLVAPGVRVSGEDIIIG 134

Query: 182 KTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRI 241
           KT  +  + +EL   TK   KRD ST LR++E GIVDQV+L+ N +G +F K+R+R+ +I
Sbjct: 135 KTAPIAPDAEELGQRTKLHVKRDTSTPLRSTENGIVDQVLLSTNAEGLRFVKVRMRTTKI 194

Query: 242 PQIGDKFASRHGQKGTCGIQYRQE------------------------------------ 265
           PQIGDKFASRHGQKGT GI YRQE                                    
Sbjct: 195 PQIGDKFASRHGQKGTIGITYRQEDMPFTSEGMVPDIIINPHAIPSRMTIAHLIECLLSK 254

Query: 266 VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYY 325
           VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+  QVFLGPTYY
Sbjct: 255 VSSLRGFEGDATPFTE-VTVDPVSRLLREHGYQSRGFEVMYNGHTGRKLVTQVFLGPTYY 313

Query: 326 QRLK 329
           QRL+
Sbjct: 314 QRLR 317


>gi|300394694|gb|ADK11885.1| DNA-directed RNA polymerase II subunit two, partial [Coniophora
           marmorata]
          Length = 686

 Score =  334 bits (856), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 175/359 (48%), Positives = 223/359 (62%), Gaps = 82/359 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF VRMDT+A++LYYP KPL TTR                              
Sbjct: 374 MGIYLTNFLVRMDTMANILYYPQKPLATTR------------------------------ 403

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 404 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 448

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP R T   M++  YDK++DDG+IAPG  VSG+D++I
Sbjct: 449 SIYYRSYMDLEKKSGIQQLEEFEKPTRDTTLRMKHGTYDKIEDDGLIAPGTGVSGEDIII 508

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E GIVDQV++T N +G KF K+RVRS R
Sbjct: 509 GKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTR 568

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 569 IPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDLVINPHAIPSRMTIGHLVECLLS 628

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
            V++  G  GDATPF D + V+ +ST L++ GYQ RG EVM++GHTGRK+ AQV+LGPT
Sbjct: 629 KVATLIGNEGDATPFTD-LTVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPT 686


>gi|45120572|gb|AAO64666.2| RNA polymerase II subunit RPB2, partial [Lycoperdon pyriforme]
          Length = 849

 Score =  334 bits (856), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 174/359 (48%), Positives = 224/359 (62%), Gaps = 82/359 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF +RMDT+A++LYYP KPL TTR                              
Sbjct: 537 MGIYLTNFLIRMDTMANILYYPQKPLATTR------------------------------ 566

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 567 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 611

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP R+T   M++  YDKL+DDG+IAPG  V G+D++I
Sbjct: 612 SIYYRSYMDLEKKSGIQQLEEFEKPTRETTLRMKHGTYDKLEDDGLIAPGTGVRGEDIII 671

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E+GIVDQV++T N +G KF K+RVRS R
Sbjct: 672 GKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRSTR 731

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 732 IPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDLVINPHAIPSRMTIGHLVECLLS 791

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
            V++  G  GDATPF D + V+ +ST L++ GYQ RG EVM++GHTGRK+ AQV+LGPT
Sbjct: 792 KVATLIGNEGDATPFTD-LTVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPT 849


>gi|194320209|gb|ACF48336.1| DNA-dependent RNA polymerase II second largest subunit [Porpidia
           speirea]
          Length = 317

 Score =  334 bits (856), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 181/364 (49%), Positives = 227/364 (62%), Gaps = 84/364 (23%)

Query: 3   VYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSV 62
           V++TN+  RMDT+A++LYYP KPL TTR                                
Sbjct: 1   VFLTNYDQRMDTMANILYYPQKPLATTR-------------------------------- 28

Query: 63  ILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSV 122
                        SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FRS+
Sbjct: 29  -------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSL 75

Query: 123 FFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIG 181
           F+R+Y D E KRIG    E+FEKP R     +++  YDKLDDDGI+APG+RVSG+D++IG
Sbjct: 76  FYRAYTDQE-KRIGMSVVEEFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIG 134

Query: 182 KTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRI 241
           KT  +  + +EL   TK   KRD ST LR++E GIVDQV+LT N +G +F K+R+R+ +I
Sbjct: 135 KTAPIAPDAEELGLRTKLHMKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKI 194

Query: 242 PQIGDKFASRHGQKGTCGIQYRQE------------------------------------ 265
           PQIGDKFASRHGQKGT GI YRQE                                    
Sbjct: 195 PQIGDKFASRHGQKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSK 254

Query: 266 VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYY 325
           VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPTYY
Sbjct: 255 VSSLRGFEGDATPFTE-VTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYY 313

Query: 326 QRLK 329
           QRL+
Sbjct: 314 QRLR 317


>gi|194320271|gb|ACF48374.1| DNA-dependent RNA polymerase II second largest subunit [Aspicilia
           cinerea]
          Length = 317

 Score =  334 bits (856), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 182/364 (50%), Positives = 226/364 (62%), Gaps = 84/364 (23%)

Query: 3   VYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSV 62
           V++TNF  RMDT++++LYYP KPL TTR                                
Sbjct: 1   VFLTNFDERMDTMSNILYYPQKPLATTR-------------------------------- 28

Query: 63  ILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSV 122
                        SME+L+FRELPAG N+IVAI CYTGYNQEDSVI+N S+++RG FRS+
Sbjct: 29  -------------SMEFLKFRELPAGQNAIVAIACYTGYNQEDSVIMNQSSIDRGLFRSL 75

Query: 123 FFRSYKDAESKRIGDQE-EQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIG 181
           F+R+Y D E KRIG    EQFEKP R     +++  YDKLDDDG++APG+RVSG+DV+IG
Sbjct: 76  FYRAYVDQE-KRIGMATVEQFEKPMRSDTLRLKHGTYDKLDDDGLVAPGVRVSGEDVIIG 134

Query: 182 KTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRI 241
           KT  +  + +EL   TK   KRD ST LR +E GIVD+V+LT N +G +F K+R+R+ +I
Sbjct: 135 KTAPIQPDAEELGQRTKLHIKRDASTPLRTTENGIVDKVLLTTNSEGLRFVKVRMRTTKI 194

Query: 242 PQIGDKFASRHGQKGTCGIQYRQE------------------------------------ 265
           PQIGDKFASRHGQKGT GI YRQE                                    
Sbjct: 195 PQIGDKFASRHGQKGTIGITYRQEDMPFTSEGIVPDLIINPHAIPSRMTIAHLIECQLSK 254

Query: 266 VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYY 325
           VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPTYY
Sbjct: 255 VSSLRGFEGDATPFTE-VTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYY 313

Query: 326 QRLK 329
           QRL+
Sbjct: 314 QRLR 317


>gi|299849863|gb|ADJ57179.1| RNA polymerase II second largest subunit [Scytalidium cuboideum]
          Length = 323

 Score =  333 bits (855), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 179/368 (48%), Positives = 227/368 (61%), Gaps = 84/368 (22%)

Query: 2   GVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDS 61
           GV++TNF  RMDT+A++LYYP K L TTR                               
Sbjct: 1   GVFLTNFDQRMDTMANILYYPQKXLATTR------------------------------- 29

Query: 62  VILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRS 121
                         SME+L+FRELPAG N+IVAI CY+GYN EDSVI+N S+++RG FRS
Sbjct: 30  --------------SMEFLKFRELPAGQNAIVAIACYSGYNXEDSVIMNQSSIDRGLFRS 75

Query: 122 VFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           +F+R+Y D E KRIG +  EQFEKP R     +++  YDKLDDDGIIAPG+RVSG+D++I
Sbjct: 76  LFYRAYTDQE-KRIGMNVVEQFEKPFRADTLKLKHGTYDKLDDDGIIAPGVRVSGEDIII 134

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +  + +EL   TK   KRD ST LR++E GIVDQV++T N +G +F K+R+R+ +
Sbjct: 135 GKTAPIAPDSEELGQRTKAHVKRDASTPLRSTENGIVDQVLITTNAEGLRFVKVRMRTTK 194

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 195 IPQIGDKFASRHGQKGTIGITYRQEDMPFTRQGIVPDLIINPHAIPXRMTIAHLIECQLS 254

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            VS+ +G  GD TPF + V V  +S LL+ +GYQ RG E+M++GHTGRK+ AQVF GPTY
Sbjct: 255 KVSTLRGLEGDXTPFTE-VTVDSVSKLLRAHGYQSRGFEIMYHGHTGRKLKAQVFFGPTY 313

Query: 325 YQRLKHMV 332
           YQRL+HMV
Sbjct: 314 YQRLRHMV 321


>gi|300394750|gb|ADK11913.1| DNA-directed RNA polymerase II subunit two, partial [Serpula
           himantioides]
          Length = 685

 Score =  333 bits (855), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 176/359 (49%), Positives = 222/359 (61%), Gaps = 82/359 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF VRMDT+A++LYYP KPL TTR                              
Sbjct: 373 MGIYLTNFLVRMDTMANILYYPQKPLATTR------------------------------ 402

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 403 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 447

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP R     M++  YDKL+DDG+IAPG  VSG+D++I
Sbjct: 448 SIYYRSYMDLEKKSGVQQLEEFEKPTRDNTLRMKHGTYDKLEDDGLIAPGTGVSGEDIII 507

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E GIVDQV++T N +G KF KIRVRS R
Sbjct: 508 GKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVDQVLITTNSEGQKFVKIRVRSTR 567

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 568 IPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDIVINPHAIPSRMTIGHLVECLLS 627

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
            V++  G  GDATPF D + V+ +ST L++ GYQ RG EVM++GHTGRK+ AQV+LGPT
Sbjct: 628 KVATLIGNEGDATPFTD-LTVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGPT 685


>gi|394998819|gb|AFN44328.1| RNA polymerase II second largest subunit, partial [Caloplaca
           cinnamomea]
 gi|394998823|gb|AFN44330.1| RNA polymerase II second largest subunit, partial [Caloplaca
           crenularia]
          Length = 317

 Score =  333 bits (855), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 177/364 (48%), Positives = 227/364 (62%), Gaps = 84/364 (23%)

Query: 4   YITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVI 63
           ++TN+  RMDT+A++LYYP KPL TTR                                 
Sbjct: 1   FLTNYDERMDTMANILYYPQKPLATTR--------------------------------- 27

Query: 64  LNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVF 123
                       SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FRS+F
Sbjct: 28  ------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLF 75

Query: 124 FRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGK 182
           +R+Y D E KR+G    E+FEKP R     +++  YDKLDDDG+IAPG+RVSGDDV+IGK
Sbjct: 76  YRAYVDTE-KRVGMTVLEKFEKPLRSDTLKLKHGTYDKLDDDGLIAPGVRVSGDDVIIGK 134

Query: 183 TITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIP 242
           T  +  + +E+   TK   K+D ST LR++E GIVD+V+L+ N +G KF K+R+R+ ++P
Sbjct: 135 TTPIAPDAEEMGQRTKNHIKKDASTPLRSTENGIVDKVLLSTNAEGLKFVKVRMRTTKVP 194

Query: 243 QIGDKFASRHGQKGTCGIQYRQE------------------------------------V 266
           QIGDKFASRHGQKGT GI YRQE                                    V
Sbjct: 195 QIGDKFASRHGQKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKV 254

Query: 267 SSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQ 326
           SS +G  GDATPF + + V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPTYYQ
Sbjct: 255 SSLRGYEGDATPFTE-ITVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQ 313

Query: 327 RLKH 330
           RL+H
Sbjct: 314 RLRH 317


>gi|40642970|emb|CAD88979.1| DNA-directed RNA polymerase subunit B [Cornus kousa]
          Length = 317

 Score =  333 bits (855), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 179/365 (49%), Positives = 222/365 (60%), Gaps = 89/365 (24%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+ +RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 6   MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA----------------------------- 36

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+V+RG+FR
Sbjct: 37  ----------------MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSVDRGFFR 80

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY+D E K     +E F +P+R    GMR+  YDKLDDDG+  PG RVSG+DV+I
Sbjct: 81  SLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 140

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT   P  +D+ +G   R++KRD ST LR+SETG    V+LT N DG +F K+RVRSVR
Sbjct: 141 GKTT--PIAQDDAQGQASRYTKRDHSTSLRHSETGT---VLLTTNADGLRFVKVRVRSVR 195

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKF+SRHGQKG  G+ Y QE                                   
Sbjct: 196 IPQIGDKFSSRHGQKGXVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMG 255

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V+++ G+ GDATPF D   V  IS  L + GYQ+RG E M+NGHTGRK+ A +FLGPTY
Sbjct: 256 KVAAHVGKEGDATPFTD---VDNISKALHKCGYQMRGFETMYNGHTGRKLTAMIFLGPTY 312

Query: 325 YQRLK 329
           YQRLK
Sbjct: 313 YQRLK 317


>gi|46277358|gb|AAS86869.1| DNA-dependent RNA polymerase II [Peziza vesiculosa]
          Length = 563

 Score =  333 bits (855), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 181/363 (49%), Positives = 227/363 (62%), Gaps = 84/363 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 248 MGVFLTNYRERMDTMANILYYPQKPLGTTR------------------------------ 277

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 278 ---------------SMEFLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 322

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+FFR+Y D E KR+G +  E+FEKP R     +++  YDKLDDDG++APG+RVSG+D++
Sbjct: 323 SLFFRTYMDQE-KRVGMNVVEEFEKPTRGNTLRLKHGTYDKLDDDGLVAPGVRVSGEDII 381

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  N +EL   TK  +KRD ST LR++E GIVDQVM+T N +G KF K+R+R+ 
Sbjct: 382 IGKTAPIAPNMEELGQRTKFHTKRDVSTPLRSTENGIVDQVMVTTNQEGLKFVKVRMRTT 441

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YR E                                  
Sbjct: 442 KIPQIGDKFASRHGQKGTIGITYRNEDMPFTSEGIVPDLIINPHAIPSRMTIAHLIECQL 501

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF D V V  +S LL+E+GYQ RG E+M+NGHTGRK+  QVFLGPT
Sbjct: 502 SKVSSLRGFEGDATPFTD-VTVDSVSRLLREHGYQSRGFEIMYNGHTGRKLVVQVFLGPT 560

Query: 324 YYQ 326
           YYQ
Sbjct: 561 YYQ 563


>gi|194320251|gb|ACF48363.1| DNA-dependent RNA polymerase II second largest subunit [Umbilicaria
           aprina]
 gi|194320256|gb|ACF48366.1| DNA-dependent RNA polymerase II second largest subunit [Umbilicaria
           rigida]
          Length = 317

 Score =  333 bits (855), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 182/364 (50%), Positives = 225/364 (61%), Gaps = 84/364 (23%)

Query: 3   VYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSV 62
           V++TNF  RMDT+A++LYYP KPL TTR                                
Sbjct: 1   VFLTNFDQRMDTMANILYYPQKPLATTR-------------------------------- 28

Query: 63  ILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSV 122
                        SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FRS+
Sbjct: 29  -------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSL 75

Query: 123 FFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIG 181
           F+R Y D E KRIG    EQFEKP R     +++  YDKLDDDGI+APG+RVSG+D++IG
Sbjct: 76  FYRCYTDQE-KRIGMSVVEQFEKPMRSDTLRLKHGTYDKLDDDGIVAPGVRVSGEDIIIG 134

Query: 182 KTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRI 241
           KT  +  + +EL   TK   KRD ST LR++E GIVDQV+LT N +G +F K+R+R+ +I
Sbjct: 135 KTAPIAPDAEELGQRTKSHVKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKI 194

Query: 242 PQIGDKFASRHGQKGTCGIQYRQE------------------------------------ 265
           PQIGDKFASRHGQKGT GI YR E                                    
Sbjct: 195 PQIGDKFASRHGQKGTIGITYRSEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSK 254

Query: 266 VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYY 325
           VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPTYY
Sbjct: 255 VSSLRGFEGDATPFTE-VTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYY 313

Query: 326 QRLK 329
           QRL+
Sbjct: 314 QRLR 317


>gi|194320235|gb|ACF48353.1| DNA-dependent RNA polymerase II second largest subunit
           [Sphaerophorus globosus]
          Length = 317

 Score =  333 bits (855), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 178/364 (48%), Positives = 228/364 (62%), Gaps = 84/364 (23%)

Query: 3   VYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSV 62
           V++TN+  RMDT+A++LYYP KPL TTR                                
Sbjct: 1   VFLTNYDQRMDTMANILYYPQKPLATTR-------------------------------- 28

Query: 63  ILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSV 122
                        SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FRS+
Sbjct: 29  -------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSL 75

Query: 123 FFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIG 181
           F+RSY D E KR+G    EQ EKP R     +++  YDKLDDDGI+APG+RVSG+D++IG
Sbjct: 76  FYRSYTDQE-KRVGMSVVEQLEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIG 134

Query: 182 KTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRI 241
           KT  +  + +EL   TK+ +KR+ ST LR++E GIVDQV+L+ N DG +F K+R+R+ +I
Sbjct: 135 KTAPISPDAEELGQRTKQHTKRNTSTPLRSTENGIVDQVLLSTNSDGLRFVKVRMRTTKI 194

Query: 242 PQIGDKFASRHGQKGTCGIQYRQE------------------------------------ 265
           PQIGDKFASRHGQKGT GI YRQE                                    
Sbjct: 195 PQIGDKFASRHGQKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSK 254

Query: 266 VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYY 325
           VSS +G  GDATPF + V V  +S LL+E+GYQ RG E+M+NGHTG+K+ AQVFLGPTYY
Sbjct: 255 VSSLRGFEGDATPFTE-VTVDSVSRLLREHGYQSRGFEIMYNGHTGQKLRAQVFLGPTYY 313

Query: 326 QRLK 329
           QRL+
Sbjct: 314 QRLR 317


>gi|103001800|gb|ABF71522.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
           chlorophanum]
          Length = 716

 Score =  333 bits (855), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 173/298 (58%), Positives = 210/298 (70%), Gaps = 39/298 (13%)

Query: 75  RSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFRSYKDAESKR 134
           RSME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FRS+F+RSY D E KR
Sbjct: 418 RSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQE-KR 476

Query: 135 IG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENEDEL 193
           IG    EQFEKP R     +++  YDKLDDDGI+APG+RVSG+D++IGKT  +  + +EL
Sbjct: 477 IGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEEL 536

Query: 194 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 253
              TK   KRD ST LR++E GIVDQV+LT N +G KF K+R+R+ +IPQIGDKFASRHG
Sbjct: 537 GQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHG 596

Query: 254 QKGTCGIQYRQE------------------------------------VSSNKGEIGDAT 277
           QKGT GI YRQE                                    VSS +G  GDAT
Sbjct: 597 QKGTIGITYRQEDMPFTMEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDAT 656

Query: 278 PFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQRLKHMVDDK 335
           PF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPTYYQRL+HMVDDK
Sbjct: 657 PFTE-VTVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDK 713


>gi|111283850|gb|ABH09217.1| RNA polymerase II second largest subunit, partial [Rhodotorula
           mucilaginosa]
          Length = 356

 Score =  333 bits (855), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 176/363 (48%), Positives = 223/363 (61%), Gaps = 82/363 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGVY+TN+ VRMDT+A++LYYP KPL TTR                              
Sbjct: 40  MGVYLTNYQVRMDTMANILYYPQKPLATTR------------------------------ 69

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL FRELPAG N++VAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 70  ---------------SMEYLHFRELPAGQNAVVAILCYSGYNQEDSVIMNQSSIDRGLFR 114

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP R T   +++  Y+KLD DG++  G RVSG+D++I
Sbjct: 115 SLYYRSYMDQEKKSGTIQLEEFEKPTRDTTLRLKHGTYEKLDGDGLVGLGERVSGEDIII 174

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +E+    K  +KRD ST L+++E G+VDQV+LT N +G KF KIRVRS R
Sbjct: 175 GKTAPIPTDSEEMGQRLKTHTKRDVSTPLKSTENGLVDQVLLTTNSEGLKFVKIRVRSTR 234

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IP+IGDKFASRHGQKGT GI YR E                                   
Sbjct: 235 IPEIGDKFASRHGQKGTIGITYRHEDMPFSAEGITPDLIINPHAIPSRMTIGHLVECLLS 294

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            +S+  G  GDATPF++ V V+ IS LL++YGY  RG EVM+NGHTGRK+ AQV+LGPTY
Sbjct: 295 KLSTITGNEGDATPFSE-VTVEAISDLLRQYGYHSRGLEVMYNGHTGRKLQAQVYLGPTY 353

Query: 325 YQR 327
           YQR
Sbjct: 354 YQR 356


>gi|56694352|gb|AAW22916.1| RNA polymerase II second largest subunit [Juniperus communis]
          Length = 514

 Score =  333 bits (854), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 175/364 (48%), Positives = 225/364 (61%), Gaps = 84/364 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+ +RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 199 MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA----------------------------- 229

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IV I CY+G  QEDSVI+N S+++RG+FR
Sbjct: 230 ----------------MEHLHFRQLPAGINAIVXISCYSGXXQEDSVIMNQSSIDRGFFR 273

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY+D E +     +E+F +PNR+   GMR+  YDKLDDDG+  PG RVSG+DV+I
Sbjct: 274 SLFFRSYRDEEKRAGTLVKEEFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 333

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT   P  +D+  G   +++KRD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVR
Sbjct: 334 GKTT--PIAQDDTAGQVSKYTKRDQSTSLRHSESGMVDQVLLTTNQDGLRFVKVRMRSVR 391

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 392 IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMG 451

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGRK++A + LGPTY
Sbjct: 452 KVAAHMGKEGDATPFTD-VTVDXISKALHKCGYQMRGFETMYNGHTGRKLSAMIXLGPTY 510

Query: 325 YQRL 328
           YQRL
Sbjct: 511 YQRL 514


>gi|6606097|gb|AAF19061.1|AF107789_1 DNA-dependent RNA polymerase II RPB140 [Neurospora crassa]
          Length = 903

 Score =  333 bits (854), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 178/367 (48%), Positives = 225/367 (61%), Gaps = 84/367 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG ++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 584 MGFFLTNYSRRMDTMANILYYPQKPLATTR------------------------------ 613

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 614 ---------------SMEYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGIFR 658

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+FFRSY D E KR+G +  EQFEKP+R      ++  YDKL++DGIIAPG+RV+GDD++
Sbjct: 659 SLFFRSYTDCE-KRVGINIVEQFEKPDRSNTLRPKHGTYDKLENDGIIAPGIRVTGDDII 717

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  +  EL   T +  KRD ST LR++E+GIVD V  T N DG ++ K+RVR+ 
Sbjct: 718 IGKTSPINPDNQELGQRTAQHVKRDASTPLRSTESGIVDSVAFTTNQDGLRYVKVRVRTT 777

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT G+ YRQE                                  
Sbjct: 778 KIPQIGDKFASRHGQKGTIGVTYRQEDMPFTAEGITPDIIINPHAIPSRMTIAHLIECLL 837

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             V + KG  GDATPF D V V  +S LL+E+GYQ RG E+M++GHTG+K+ AQVF GPT
Sbjct: 838 SKVGALKGMEGDATPFTD-VTVDSVSNLLREHGYQSRGFEIMYHGHTGKKLRAQVFFGPT 896

Query: 324 YYQRLKH 330
           YYQRL+H
Sbjct: 897 YYQRLRH 903


>gi|103002027|gb|ABF71533.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
           sp. Zhurbenko 92515]
          Length = 305

 Score =  333 bits (854), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 173/298 (58%), Positives = 210/298 (70%), Gaps = 39/298 (13%)

Query: 75  RSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFRSYKDAESKR 134
           RSME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FRS+F+RSY D E KR
Sbjct: 10  RSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQE-KR 68

Query: 135 IG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENEDEL 193
           IG    EQFEKP R     +++  YDKLDDDGI+APG+RVSG+D++IGKT  +  + +EL
Sbjct: 69  IGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEEL 128

Query: 194 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 253
              TK   KRD ST LR++E GIVDQV+LT N +G KF K+R+R+ +IPQIGDKFASRHG
Sbjct: 129 GQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHG 188

Query: 254 QKGTCGIQYRQE------------------------------------VSSNKGEIGDAT 277
           QKGT GI YRQE                                    VSS +G  GDAT
Sbjct: 189 QKGTIGITYRQEDMPFTKEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDAT 248

Query: 278 PFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQRLKHMVDDK 335
           PF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPTYYQRL+HMVDDK
Sbjct: 249 PFTE-VTVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDDK 305


>gi|46277281|gb|AAS86831.1| RNA polymerase II second largest subunit, partial [Arceuthobium
           campylopodum]
          Length = 584

 Score =  333 bits (854), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 176/364 (48%), Positives = 223/364 (61%), Gaps = 84/364 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+  RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 269 MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA----------------------------- 299

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 300 ----------------MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 343

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY+D E K     +E F +PNR    GMR+  YDKLDDDG+  PG +V+G++V+I
Sbjct: 344 SLFFRSYRDEEKKMGTLIKEDFGRPNRTDTMGMRHGSYDKLDDDGLAPPGTKVTGENVII 403

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GK  T P   DE +  + R++KRD ST LR+SE G+VDQV+LT N DG +F K+RVRSVR
Sbjct: 404 GK--TSPIAPDESQEQSFRYTKRDHSTSLRHSENGVVDQVLLTTNADGLRFVKVRVRSVR 461

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 462 IPQIGDKFSSRHGQKGTIGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIAQLIECIMG 521

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V+++ G+ GDATPF D V V  IS  L + GYQ+ G E M+NGHTGRK+ + +F+GPTY
Sbjct: 522 KVAAHMGKEGDATPFTD-VTVDNISQALHKCGYQMHGFETMYNGHTGRKLTSMIFIGPTY 580

Query: 325 YQRL 328
           YQRL
Sbjct: 581 YQRL 584


>gi|194320284|gb|ACF48382.1| RNA polymerase II second largest subunit [Pycnothelia papillaria]
          Length = 693

 Score =  333 bits (854), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 180/360 (50%), Positives = 224/360 (62%), Gaps = 84/360 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN++VRMDT+A++LYYP KPL TTR                              
Sbjct: 381 MGVFLTNYNVRMDTMANILYYPQKPLATTR------------------------------ 410

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 411 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 455

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+R+Y D E KRIG    EQFEKP R     +++  YDKLDDDGI+APG+RVSG+D++
Sbjct: 456 SLFYRAYTDQE-KRIGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDII 514

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK   KRD ST LR++E GIVDQV+L+ N DG +F K+R+R+ 
Sbjct: 515 IGKTAPIAPDSEELGQRTKLHVKRDASTPLRSTENGIVDQVVLSTNADGLRFAKVRMRTT 574

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 575 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQL 634

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + V V  +S LL+E GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 635 SKVSSLRGYEGDATPFTE-VTVDSVSRLLRENGYQSRGFEVMYNGHTGRKLVAQVFLGPT 693


>gi|45545307|gb|AAS67501.1| DNA-dependent RNA polymerase II second largest subunit, partial
           [Candida glabrata]
          Length = 885

 Score =  333 bits (853), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 174/361 (48%), Positives = 222/361 (61%), Gaps = 82/361 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN++ RMDT+A++LYYP KPL TTR                              
Sbjct: 570 MGVFLTNYNFRMDTMANILYYPQKPLGTTR------------------------------ 599

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          +MEYL+FRELPAG N+IVAI CY+GYNQEDS+I+N S+++RG FR
Sbjct: 600 ---------------AMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFR 644

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY D E K      E FEKP R     M++  YDKLD+DG+IAPG+RVSG+D++I
Sbjct: 645 SLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDEDGLIAPGVRVSGEDIII 704

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +  +E+EL   T   SKRD ST LR++E GIVDQV++T N DG KF K+RVR+ +
Sbjct: 705 GKTTPIAPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLITTNQDGLKFVKVRVRTTK 764

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           +PQIGDKFASRHGQKGT GI YR+E                                   
Sbjct: 765 VPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLS 824

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDA+PF D + V+ IS LL+E+GYQ RG EVM+NGHTG+K+ AQ+F GPTY
Sbjct: 825 KVAALSGNEGDASPFTD-ITVEGISKLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTY 883

Query: 325 Y 325
           Y
Sbjct: 884 Y 884


>gi|113707349|gb|ABI36582.1| RNA polymerase II second largest subunit [Usnea antarctica]
          Length = 711

 Score =  333 bits (853), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 179/364 (49%), Positives = 226/364 (62%), Gaps = 84/364 (23%)

Query: 3   VYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSV 62
           V++TN+  RMDT+A++LYYP KPL TTR                                
Sbjct: 395 VFLTNYQQRMDTMANILYYPQKPLATTR-------------------------------- 422

Query: 63  ILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSV 122
                        SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FRS+
Sbjct: 423 -------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSL 469

Query: 123 FFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIG 181
           F+R+Y D E KRIG    EQFEKP R     +++  YDKLDDDG++APG+RVSG+D++IG
Sbjct: 470 FYRAYTDQE-KRIGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGLVAPGVRVSGEDIIIG 528

Query: 182 KTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRI 241
           KT  +  + +EL   TK   KRD ST LR++E GIVDQV+L+ N +G +F K+R+R+ +I
Sbjct: 529 KTAPIAPDAEELGQRTKLHIKRDTSTPLRSTENGIVDQVLLSTNAEGLRFVKVRMRTTKI 588

Query: 242 PQIGDKFASRHGQKGTCGIQYRQE------------------------------------ 265
           PQIGDKFASRHGQKGT GI YRQE                                    
Sbjct: 589 PQIGDKFASRHGQKGTIGITYRQEDMPFTSEGMVPDLIISPHAIPSRMTIAHLIECLLSK 648

Query: 266 VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYY 325
           VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+  QVFLGPTYY
Sbjct: 649 VSSLRGFEGDATPFTE-VTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVTQVFLGPTYY 707

Query: 326 QRLK 329
           QRL+
Sbjct: 708 QRLR 711


>gi|194320232|gb|ACF48351.1| DNA-dependent RNA polymerase II second largest subunit [Tephromela
           atra]
          Length = 317

 Score =  333 bits (853), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 181/364 (49%), Positives = 225/364 (61%), Gaps = 84/364 (23%)

Query: 3   VYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSV 62
           V++TN+  RMDT+A++LYYP KPL TTR                                
Sbjct: 1   VFLTNYDQRMDTMANILYYPQKPLATTR-------------------------------- 28

Query: 63  ILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSV 122
                        SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FRS+
Sbjct: 29  -------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSL 75

Query: 123 FFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIG 181
           F+RSY D E KRIG    EQFEKP R     +++  Y KLDDDGI+APG+RVSG+D++IG
Sbjct: 76  FYRSYTDQE-KRIGMSVVEQFEKPMRSDTLKLKHGTYGKLDDDGIVAPGVRVSGEDIIIG 134

Query: 182 KTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRI 241
           KT  +  + +EL   TK   KRD ST LR++E GIVDQV+L+ N DG +F K+R+R+ +I
Sbjct: 135 KTAPIAPDAEELGQRTKLHVKRDTSTPLRSTENGIVDQVLLSTNADGLRFVKVRMRTTKI 194

Query: 242 PQIGDKFASRHGQKGTCGIQYRQE------------------------------------ 265
           PQIGDKFASRHGQKGT GI YRQE                                    
Sbjct: 195 PQIGDKFASRHGQKGTIGITYRQEDMPFTGEGVVPDLIINPHAIPSRMTIAHLIECQLSK 254

Query: 266 VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYY 325
           VSS +G  GDATPF + V V  +S LL+E+GY  RG EVM+NGHTGRK+ AQVFLGPTYY
Sbjct: 255 VSSLRGFEGDATPFTE-VTVDSVSKLLREHGYHSRGFEVMYNGHTGRKLVAQVFLGPTYY 313

Query: 326 QRLK 329
           QRL+
Sbjct: 314 QRLR 317


>gi|113707347|gb|ABI36581.1| RNA polymerase II second largest subunit [Lasallia papulosa]
          Length = 710

 Score =  333 bits (853), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 181/364 (49%), Positives = 226/364 (62%), Gaps = 84/364 (23%)

Query: 3   VYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSV 62
           V++TNF  RMDT+A++LYYP KPL TTR                                
Sbjct: 394 VFLTNFDQRMDTMANILYYPQKPLATTR-------------------------------- 421

Query: 63  ILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSV 122
                        SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FRS+
Sbjct: 422 -------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSL 468

Query: 123 FFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIG 181
           F+R Y D E KRIG    EQFEKP R     +++  YDKLDDDGI+APG+RVSG+D++IG
Sbjct: 469 FYRCYTDQE-KRIGMSVVEQFEKPMRSDTLRLKHGTYDKLDDDGIVAPGVRVSGEDIIIG 527

Query: 182 KTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRI 241
           KT  + ++ +EL   TK   KRD ST LR++E GIVDQV+LT N +G +F K+R+R+ ++
Sbjct: 528 KTAPMTQDAEELGQRTKSHIKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKV 587

Query: 242 PQIGDKFASRHGQKGTCGIQYRQE------------------------------------ 265
           PQIGDKFASRHGQKGT GI YR E                                    
Sbjct: 588 PQIGDKFASRHGQKGTIGITYRSEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSK 647

Query: 266 VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYY 325
           VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPTYY
Sbjct: 648 VSSLRGFEGDATPFTE-VTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYY 706

Query: 326 QRLK 329
           QRL+
Sbjct: 707 QRLR 710


>gi|300394712|gb|ADK11894.1| DNA-directed RNA polymerase II subunit two, partial [Leucogyrophana
           lichenicola]
          Length = 664

 Score =  333 bits (853), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 174/358 (48%), Positives = 222/358 (62%), Gaps = 82/358 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF VRMDT+A++LYYP KPL TTR                              
Sbjct: 353 MGIYLTNFLVRMDTMANILYYPQKPLATTR------------------------------ 382

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 383 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 427

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP R T   M++  YDK++DDG+IAPG  VSG+D++I
Sbjct: 428 SIYYRSYMDLEKKSGVQQLEEFEKPTRDTTLRMKHGTYDKIEDDGLIAPGTGVSGEDIII 487

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E GIVDQV++T N +G KF K+RVRS R
Sbjct: 488 GKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTR 547

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 548 IPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLS 607

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGP 322
            V++  G  GDATPF D + V+ +ST L++ GYQ RG EVM++GHTGRK+ AQV+LGP
Sbjct: 608 KVATLIGNEGDATPFTD-LTVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGP 664


>gi|194320138|gb|ACF48290.1| DNA-dependent RNA polymerase II second largest subunit [Candelaria
           concolor]
          Length = 324

 Score =  333 bits (853), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 182/366 (49%), Positives = 226/366 (61%), Gaps = 84/366 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+ VRMDT+A++LYYP KPL TTR                              
Sbjct: 6   MGVFLTNYGVRMDTMANILYYPQKPLATTR------------------------------ 35

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 36  ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 80

Query: 121 SVFFRSYKDAESKRIGDQE-EQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+R+Y D + KRIG    E+FEKP R     +++  YDKLDDDGI+APG+RVSG+D++
Sbjct: 81  SLFYRAYTD-QGKRIGVAVVEEFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDII 139

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK   KRD ST LR++E GIVDQV+L+ N DG +F K+R+R+ 
Sbjct: 140 IGKTAPIAPDAEELGQRTKLHIKRDASTPLRSTENGIVDQVLLSNNQDGLRFTKVRMRTT 199

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           ++PQIGDKFASRHGQKGT GI YR E                                  
Sbjct: 200 KVPQIGDKFASRHGQKGTIGITYRSEDMPFTRDGIVPDLIINPHAIPSRMTIAHLIECQL 259

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF D V VQ IS LL E GYQ RG E M+NGHTGRK+  QVFLGPT
Sbjct: 260 SKVSSLRGFEGDATPFTD-VTVQNISKLLFEQGYQSRGFEEMYNGHTGRKMVVQVFLGPT 318

Query: 324 YYQRLK 329
           YYQRL+
Sbjct: 319 YYQRLR 324


>gi|194320206|gb|ACF48334.1| DNA-dependent RNA polymerase II second largest subunit [Porpidia
           albocaerulescens]
          Length = 317

 Score =  332 bits (852), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 181/364 (49%), Positives = 228/364 (62%), Gaps = 84/364 (23%)

Query: 3   VYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSV 62
           V++TN+ VRMDT+A++LYYP KPL TTR                                
Sbjct: 1   VFLTNYDVRMDTMANILYYPQKPLATTR-------------------------------- 28

Query: 63  ILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSV 122
                        SME+L+FRELPAG N+IVAI C +GYNQEDSVI+N S+++RG FRS+
Sbjct: 29  -------------SMEFLKFRELPAGQNAIVAIACCSGYNQEDSVIMNQSSIDRGLFRSL 75

Query: 123 FFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIG 181
           F+RSY D E KRIG +  E+FEKP R     +++  YDKLDDDGI+APG+RVSG+D++IG
Sbjct: 76  FYRSYTDQE-KRIGMNVVEEFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIG 134

Query: 182 KTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRI 241
           KT  +  + +EL   TK   KRD ST LR++E GIVDQV+LT N +G +F K+R+R+ +I
Sbjct: 135 KTAPIAPDAEELGLRTKLHMKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKI 194

Query: 242 PQIGDKFASRHGQKGTCGIQYRQE------------------------------------ 265
           PQIGDKFASRHGQKGT GI YRQE                                    
Sbjct: 195 PQIGDKFASRHGQKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSK 254

Query: 266 VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYY 325
           VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTG+K+ AQVFLGPTYY
Sbjct: 255 VSSLRGFEGDATPFTE-VTVDSVSRLLREHGYQSRGFEVMYNGHTGKKLVAQVFLGPTYY 313

Query: 326 QRLK 329
           QRL+
Sbjct: 314 QRLR 317


>gi|119643987|gb|ABL85599.1| RNA polymerase II second largest subunit [Candelariella reflexa]
          Length = 318

 Score =  332 bits (852), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 182/365 (49%), Positives = 222/365 (60%), Gaps = 84/365 (23%)

Query: 3   VYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSV 62
           VY+TNF  RMDT+A++LYYP KPL TTR                                
Sbjct: 1   VYLTNFDTRMDTMANILYYPQKPLATTR-------------------------------- 28

Query: 63  ILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSV 122
                        SME++ FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FRS+
Sbjct: 29  -------------SMEFINFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSL 75

Query: 123 FFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIG 181
           F+R+Y D E KRIG    EQFEKP R     ++   YDKLD+DGI+APG+RVSG+D++IG
Sbjct: 76  FYRAYTDQE-KRIGMSVVEQFEKPMRSDTLRLKQGTYDKLDEDGIVAPGVRVSGEDIIIG 134

Query: 182 KTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRI 241
           KT  +  + +EL   TK   KRD ST LR++E GIVDQV+L+ N +G KF K+R+R+ +I
Sbjct: 135 KTAPIAPDAEELGQRTKLHIKRDVSTPLRSTENGIVDQVLLSTNAEGLKFVKVRMRTTKI 194

Query: 242 PQIGDKFASRHGQKGTCGIQYRQE------------------------------------ 265
           PQIGDKFASRHGQKGT GI YRQE                                    
Sbjct: 195 PQIGDKFASRHGQKGTIGITYRQEDMPFTRDGVVPDLIINPHAIPSRMTIAHLIECQLSK 254

Query: 266 VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYY 325
           VS+ +G  GDATPF D V VQ IS LL E GY  RG E M+NGHTGRK+  QVFLGPTYY
Sbjct: 255 VSALRGFEGDATPFTD-VTVQNISKLLHEQGYHSRGFEEMYNGHTGRKMVVQVFLGPTYY 313

Query: 326 QRLKH 330
           QRL+H
Sbjct: 314 QRLRH 318


>gi|394998861|gb|AFN44349.1| RNA polymerase II second largest subunit, partial [Megalospora
           tuberculosa]
          Length = 317

 Score =  332 bits (852), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 177/364 (48%), Positives = 227/364 (62%), Gaps = 84/364 (23%)

Query: 4   YITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVI 63
           ++TN+  RMDT+A++LYYP KPL TTR                                 
Sbjct: 1   FLTNYDERMDTMANILYYPQKPLATTR--------------------------------- 27

Query: 64  LNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVF 123
                       SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FRS+F
Sbjct: 28  ------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLF 75

Query: 124 FRSYKDAESKRIGDQE-EQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGK 182
           +R+Y D E KR+G Q  E FEKP R     +++  YDKLD+DG++APG+RVSGDDV+IGK
Sbjct: 76  YRAYVDTE-KRVGMQVLESFEKPLRSETLKLKHGTYDKLDNDGLVAPGVRVSGDDVIIGK 134

Query: 183 TITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIP 242
           T  +  + +E+   TK   K+D ST LR++E GIVD+V+L+ N +G KF K+R+R+ +IP
Sbjct: 135 TTPIAPDAEEMGQRTKAHIKKDASTPLRSTENGIVDRVLLSTNSEGLKFVKVRMRTTKIP 194

Query: 243 QIGDKFASRHGQKGTCGIQYRQE------------------------------------V 266
           QIGDKFASRHGQKGT GI YRQE                                    V
Sbjct: 195 QIGDKFASRHGQKGTIGITYRQEDMPFTSEGMVPDIIINPHAIPSRMTIAHLIECQLSKV 254

Query: 267 SSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQ 326
           SS +G  GDATPF + + V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPTYYQ
Sbjct: 255 SSLRGYEGDATPFTE-ITVDSVSNLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQ 313

Query: 327 RLKH 330
           RL+H
Sbjct: 314 RLRH 317


>gi|395863613|gb|AFN80334.1| RNA polymerase II beta subunit, partial [Fusarium fujikuroi]
 gi|395863943|gb|AFN80511.1| RNA polymerase II subunit beta, partial [Gibberella moniliformis]
 gi|395863945|gb|AFN80512.1| RNA polymerase II subunit beta, partial [Fusarium proliferatum]
 gi|395863947|gb|AFN80513.1| RNA polymerase II subunit beta, partial [Fusarium fujikuroi]
 gi|395863949|gb|AFN80514.1| RNA polymerase II subunit beta, partial [Fusarium commune]
 gi|395863951|gb|AFN80515.1| RNA polymerase II subunit beta, partial [Fusarium fujikuroi]
 gi|395863953|gb|AFN80516.1| RNA polymerase II subunit beta, partial [Fusarium fujikuroi]
 gi|395863955|gb|AFN80517.1| RNA polymerase II subunit beta, partial [Fusarium fujikuroi]
 gi|395863957|gb|AFN80518.1| RNA polymerase II subunit beta, partial [Fusarium fujikuroi]
 gi|395863959|gb|AFN80519.1| RNA polymerase II subunit beta, partial [Fusarium proliferatum]
 gi|395863961|gb|AFN80520.1| RNA polymerase II subunit beta, partial [Fusarium fujikuroi]
 gi|395863963|gb|AFN80521.1| RNA polymerase II subunit beta, partial [Fusarium fujikuroi]
 gi|395863965|gb|AFN80522.1| RNA polymerase II subunit beta, partial [Fusarium fujikuroi]
 gi|429139250|gb|AFZ75475.1| RNA polymerase II subunit beta, partial [Fusarium concentricum]
 gi|429139252|gb|AFZ75476.1| RNA polymerase II subunit beta, partial [Fusarium commune]
 gi|429139254|gb|AFZ75477.1| RNA polymerase II subunit beta, partial [Fusarium commune]
 gi|429139256|gb|AFZ75478.1| RNA polymerase II subunit beta, partial [Fusarium commune]
 gi|429139258|gb|AFZ75479.1| RNA polymerase II subunit beta, partial [Fusarium commune]
 gi|429139260|gb|AFZ75480.1| RNA polymerase II subunit beta, partial [Fusarium proliferatum]
 gi|429139262|gb|AFZ75481.1| RNA polymerase II subunit beta, partial [Fusarium concentricum]
 gi|429139264|gb|AFZ75482.1| RNA polymerase II subunit beta, partial [Fusarium proliferatum]
 gi|429139266|gb|AFZ75483.1| RNA polymerase II subunit beta, partial [Fusarium proliferatum]
 gi|429139268|gb|AFZ75484.1| RNA polymerase II subunit beta, partial [Fusarium subglutinans]
 gi|429139270|gb|AFZ75485.1| RNA polymerase II subunit beta, partial [Fusarium subglutinans]
 gi|429139272|gb|AFZ75486.1| RNA polymerase II subunit beta, partial [Gibberella moniliformis]
 gi|429139274|gb|AFZ75487.1| RNA polymerase II subunit beta, partial [Fusarium proliferatum]
 gi|429139276|gb|AFZ75488.1| RNA polymerase II subunit beta, partial [Gibberella moniliformis]
 gi|429139278|gb|AFZ75489.1| RNA polymerase II subunit beta, partial [Fusarium subglutinans]
 gi|429139280|gb|AFZ75490.1| RNA polymerase II subunit beta, partial [Gibberella moniliformis]
 gi|429139282|gb|AFZ75491.1| RNA polymerase II subunit beta, partial [Gibberella moniliformis]
 gi|429139284|gb|AFZ75492.1| RNA polymerase II subunit beta, partial [Fusarium concentricum]
 gi|429139286|gb|AFZ75493.1| RNA polymerase II subunit beta, partial [Gibberella moniliformis]
          Length = 318

 Score =  332 bits (852), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 176/363 (48%), Positives = 224/363 (61%), Gaps = 82/363 (22%)

Query: 4   YITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVI 63
           ++TN+  RMDT+A++LYYP KPL TTR                                 
Sbjct: 2   FLTNYSRRMDTMANILYYPQKPLATTR--------------------------------- 28

Query: 64  LNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVF 123
                       SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FRS+F
Sbjct: 29  ------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLF 76

Query: 124 FRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKT 183
           FRSY D E K   +  E FEKP +QT   M++  YDKLD+DGI+APG+RVSG+D++IGKT
Sbjct: 77  FRSYSDQEKKVGLNYTEIFEKPFQQTTLRMKHGTYDKLDEDGIVAPGVRVSGEDIIIGKT 136

Query: 184 ITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQ 243
             + +   +L   T+   +RD ST LR++E GIVDQV+LT+N D  K+ K+RVR+ +IPQ
Sbjct: 137 APIDQENQDLGTRTQSHQRRDISTPLRSTENGIVDQVILTVNADNVKYVKVRVRTTKIPQ 196

Query: 244 IGDKFASRHGQKGTCGIQYRQE------------------------------------VS 267
           IGDKFASRHGQKGT G+ YRQE                                    VS
Sbjct: 197 IGDKFASRHGQKGTIGVTYRQEDMPFSREGLTPDIIINPHAIPSRMTIAHLIECLLSKVS 256

Query: 268 SNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQR 327
           + +G  GDATPF D V V  +S LL+++GYQ RG EVM+NGHTGRK+ AQVF GPTYYQR
Sbjct: 257 TLEGMEGDATPFTD-VTVDSVSELLRKHGYQSRGFEVMYNGHTGRKLRAQVFFGPTYYQR 315

Query: 328 LKH 330
           L+H
Sbjct: 316 LRH 318


>gi|45545327|gb|AAS67511.1| DNA-dependent RNA polymerase II second largest subunit, partial
           [Dibaeis baeomyces]
          Length = 893

 Score =  332 bits (852), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 177/367 (48%), Positives = 225/367 (61%), Gaps = 84/367 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+++TNF  RMD   ++LYYP KPL TTR                              
Sbjct: 574 MGIFLTNFSERMDNAFNILYYPQKPLATTR------------------------------ 603

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 604 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 648

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+++R+Y D E KR+G    EQFEKP R     +++  YDKLDDDG++APG+R+SG+D++
Sbjct: 649 SLYYRTYTDQE-KRVGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGLVAPGVRISGEDII 707

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK   KRD ST LR +E G+VD+VML+ N +G +F K+R R+ 
Sbjct: 708 IGKTEPIAPDSEELGQRTKLHVKRDKSTPLRTTENGLVDKVMLSTNAEGLRFVKVRTRTT 767

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 768 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGIVPDLIINPHAIPSRMTIAHLIECQL 827

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 828 SKVSSLRGYEGDATPFTE-VTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 886

Query: 324 YYQRLKH 330
           YYQRL+H
Sbjct: 887 YYQRLRH 893


>gi|194320180|gb|ACF48318.1| DNA-dependent RNA polymerase II second largest subunit [Loxospora
           cismonica]
 gi|194320183|gb|ACF48320.1| DNA-dependent RNA polymerase II second largest subunit [Loxospora
           ochrophaea]
          Length = 317

 Score =  332 bits (852), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 178/364 (48%), Positives = 227/364 (62%), Gaps = 84/364 (23%)

Query: 3   VYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSV 62
           VY+TN+  RMDT+A++LYYP KPL TTR                                
Sbjct: 1   VYLTNYEERMDTMANILYYPQKPLATTR-------------------------------- 28

Query: 63  ILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSV 122
                        SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FRS+
Sbjct: 29  -------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSL 75

Query: 123 FFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIG 181
           F+R+Y + E KRIG    EQFEKP R     +++  YDKLDDDG+IAPG+RVSG D++IG
Sbjct: 76  FYRTYPEQE-KRIGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGVIAPGVRVSGGDIIIG 134

Query: 182 KTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRI 241
           KT  +  + +EL   TK   KRD ST LR++E+GIVD+V+++ N +G +F K+R+R+ ++
Sbjct: 135 KTAPIAPDAEELGQRTKLHIKRDASTPLRSTESGIVDRVLMSTNAEGLRFVKVRMRTTKV 194

Query: 242 PQIGDKFASRHGQKGTCGIQYRQE------------------------------------ 265
           PQIGDKFASRHGQKGT GI YRQE                                    
Sbjct: 195 PQIGDKFASRHGQKGTIGITYRQEDMPFTSEGIVPDLIINPHAIPSRMTIAHLIECQLSK 254

Query: 266 VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYY 325
           VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPTYY
Sbjct: 255 VSSLRGYEGDATPFTE-VTVDSVSGLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYY 313

Query: 326 QRLK 329
           QRL+
Sbjct: 314 QRLR 317


>gi|300394710|gb|ADK11893.1| DNA-directed RNA polymerase II subunit two, partial [Jaapia
           argillacea]
          Length = 352

 Score =  332 bits (852), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 174/358 (48%), Positives = 222/358 (62%), Gaps = 82/358 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF VRMDT+A++LYYP KPL TTR                              
Sbjct: 41  MGIYLTNFLVRMDTMANILYYPQKPLATTR------------------------------ 70

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYLRFRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 71  ---------------SMEYLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 115

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E FEKP R T   M++  YDKL+DDG+IAPG  V+G+D++I
Sbjct: 116 SIYYRSYMDIEKKSGVQQLEMFEKPTRDTTLRMKHGTYDKLEDDGLIAPGTGVNGEDIII 175

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E+GIVDQV++T N +G KF K+RVR+ R
Sbjct: 176 GKTAPIPPDSEELGQRTRSHTRRDVSTALKSTESGIVDQVLITTNSEGQKFVKVRVRATR 235

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 236 IPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIVINPHAIPSRMTIGHLVECLLS 295

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGP 322
            V++  G  GDATPF D + V+ +ST L++ GYQ RG EVM++GHTGRK+ AQV+LGP
Sbjct: 296 KVATLIGNEGDATPFTD-LTVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLGP 352


>gi|40643907|emb|CAD89692.1| RNA polymerase II, second largest subunit [Escallonia sp. Oxelman
           2340]
          Length = 321

 Score =  332 bits (852), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 176/364 (48%), Positives = 221/364 (60%), Gaps = 84/364 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+  RMDTLA+VLYYP KPLVTTR++                            
Sbjct: 6   MGIYVTNYQTRMDTLAYVLYYPQKPLVTTRAL---------------------------- 37

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                            E+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N SA++RG+FR
Sbjct: 38  -----------------EHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSAIDRGFFR 80

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+F+  Y+D E K     +E F  P+R    GMR+  YDKLD+DG+  PG RVSGDDV+I
Sbjct: 81  SLFYCPYRDEEKKMGTLVKEDFGCPHRDNTMGMRHGSYDKLDNDGLAPPGSRVSGDDVII 140

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT   P N+++ +G   R+++RD ST LR+SE+G VDQV+LT N DG KF K+R+RSVR
Sbjct: 141 GKTT--PFNQEDAQGQVSRYTRRDHSTSLRHSESGTVDQVLLTTNADGLKFVKVRMRSVR 198

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 199 IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGINPDIIVNLHAIPSRMTIGQLIECIMG 258

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D V V  IS  L + GYQ+RG E M+NGHTGR++ A +FLGPTY
Sbjct: 259 KVAAQMGXEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRMTAMIFLGPTY 317

Query: 325 YQRL 328
           YQRL
Sbjct: 318 YQRL 321


>gi|394998847|gb|AFN44342.1| RNA polymerase II second largest subunit, partial [Fulgensia
           fulgens]
          Length = 317

 Score =  332 bits (852), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 176/364 (48%), Positives = 226/364 (62%), Gaps = 84/364 (23%)

Query: 4   YITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVI 63
           ++TN+  RMDT+A++LYYP KPL TTR                                 
Sbjct: 1   FLTNYDERMDTMANILYYPQKPLATTR--------------------------------- 27

Query: 64  LNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVF 123
                       SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FRS+F
Sbjct: 28  ------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLF 75

Query: 124 FRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGK 182
           +R+Y D E KR+G    E+FEKP R     +++  YDKLDDDG++APG+RVSGDDV+IGK
Sbjct: 76  YRAYVDTE-KRVGMTVLEKFEKPLRSETLKLKHGTYDKLDDDGLVAPGVRVSGDDVIIGK 134

Query: 183 TITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIP 242
           T  +    +E+   TK   K+D ST LR++E GIVD+V+L+ N +G KF K+R+R+ ++P
Sbjct: 135 TTPIAPEAEEMGQRTKSHIKKDASTPLRSTENGIVDKVLLSTNSEGLKFVKVRMRTTKVP 194

Query: 243 QIGDKFASRHGQKGTCGIQYRQE------------------------------------V 266
           QIGDKFASRHGQKGT GI YRQE                                    V
Sbjct: 195 QIGDKFASRHGQKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKV 254

Query: 267 SSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQ 326
           SS +G  GDATPF + + V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPTYYQ
Sbjct: 255 SSLRGYEGDATPFTE-ITVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQ 313

Query: 327 RLKH 330
           RL+H
Sbjct: 314 RLRH 317


>gi|194320254|gb|ACF48365.1| DNA-dependent RNA polymerase II second largest subunit [Umbilicaria
           arctica]
          Length = 317

 Score =  332 bits (852), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 182/364 (50%), Positives = 224/364 (61%), Gaps = 84/364 (23%)

Query: 3   VYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSV 62
           V++TNF  RMDT+A++LYYP KPL TTR                                
Sbjct: 1   VFLTNFDQRMDTMANILYYPQKPLATTR-------------------------------- 28

Query: 63  ILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSV 122
                        SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FRS+
Sbjct: 29  -------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSL 75

Query: 123 FFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIG 181
           F+R Y D E KRIG    EQFEKP R     +++  YDKLDDDGI+APG+RVSG+D++IG
Sbjct: 76  FYRCYTDQE-KRIGMSVVEQFEKPMRSDTLRLKHGTYDKLDDDGIVAPGVRVSGEDIIIG 134

Query: 182 KTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRI 241
           KT  +  +  EL   TK   KRD ST LR++E GIVDQV+LT N +G +F K+R+R+ +I
Sbjct: 135 KTAPIAPDAGELGQRTKSHVKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKI 194

Query: 242 PQIGDKFASRHGQKGTCGIQYRQE------------------------------------ 265
           PQIGDKFASRHGQKGT GI YR E                                    
Sbjct: 195 PQIGDKFASRHGQKGTIGITYRSEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSK 254

Query: 266 VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYY 325
           VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPTYY
Sbjct: 255 VSSLRGFEGDATPFTE-VTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYY 313

Query: 326 QRLK 329
           QRL+
Sbjct: 314 QRLR 317


>gi|394998853|gb|AFN44345.1| RNA polymerase II second largest subunit, partial [Letrouitia
           parabola]
 gi|394998855|gb|AFN44346.1| RNA polymerase II second largest subunit, partial [Letrouitia
           vulpina]
          Length = 317

 Score =  332 bits (852), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 177/364 (48%), Positives = 228/364 (62%), Gaps = 84/364 (23%)

Query: 4   YITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVI 63
           ++TN+  RMDT+A++LYYP KPL TTR                                 
Sbjct: 1   FLTNYESRMDTMANILYYPQKPLATTR--------------------------------- 27

Query: 64  LNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVF 123
                       SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FRS+F
Sbjct: 28  ------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLF 75

Query: 124 FRSYKDAESKRIGDQE-EQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGK 182
           +R+Y DAE KR+G    E+FEKP R     +++  YDKLDDDG++APG+RVSG+DV+IGK
Sbjct: 76  YRAYVDAE-KRVGMAVIERFEKPLRSETLKLKHGTYDKLDDDGLVAPGVRVSGEDVIIGK 134

Query: 183 TITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIP 242
           T  +  + +E+   TK   KRD ST LR++E GIVD+V+L+ N +G KF K+R+R+ ++P
Sbjct: 135 TQPIAPDAEEMGQRTKMHVKRDASTPLRSTENGIVDRVLLSTNQEGLKFVKVRMRTTKVP 194

Query: 243 QIGDKFASRHGQKGTCGIQYRQE------------------------------------V 266
           QIGDKFASRHGQKGT GI YRQE                                    V
Sbjct: 195 QIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDLIINPHAIPSRMTIAHLIECQLSKV 254

Query: 267 SSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQ 326
           SS +G  GDATPF + + V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPTYYQ
Sbjct: 255 SSLRGFEGDATPFTE-ITVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQ 313

Query: 327 RLKH 330
           RL+H
Sbjct: 314 RLRH 317


>gi|47156741|gb|AAT12267.1| RNA polymerase II second largest subunit [Diapensia lapponica]
          Length = 541

 Score =  332 bits (851), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 174/364 (47%), Positives = 222/364 (60%), Gaps = 84/364 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+ +RMDTLA+VLYYP KPLV TR+                             
Sbjct: 226 MGIYVTNYQLRMDTLAYVLYYPQKPLVITRA----------------------------- 256

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+ VAI CY+GYNQEDS+I+N S+++RG+FR
Sbjct: 257 ----------------MEHLHFRQLPAGINATVAIACYSGYNQEDSLIMNQSSIDRGFFR 300

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY+D E K     +E F  PNR    GMR+  YDKLDDDG+  PG RVSG+DV+I
Sbjct: 301 SLFFRSYRDEEKKMGTLVKEDFGCPNRDNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 360

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT   P   D+  G   R+++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVR
Sbjct: 361 GKTT--PIAPDDATGQNSRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVR 418

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 419 IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGITPDIIVNPHAIPSRMTIGQLIECIMG 478

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V+++ G+ GDATPF + V V  IS  L + GYQ+RG E M+NGHTGR++ + +FLGPTY
Sbjct: 479 KVAAHMGKEGDATPFTE-VTVDNISKALHKCGYQMRGFETMYNGHTGRQLTSMIFLGPTY 537

Query: 325 YQRL 328
           YQRL
Sbjct: 538 YQRL 541


>gi|194320135|gb|ACF48288.1| DNA-dependent RNA polymerase II second largest subunit [Lecanora
           polytropa]
          Length = 316

 Score =  332 bits (851), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 179/362 (49%), Positives = 224/362 (61%), Gaps = 84/362 (23%)

Query: 4   YITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVI 63
           ++TNF  RMDT+A++LYYP KPL TTR                                 
Sbjct: 1   FLTNFDQRMDTMANILYYPQKPLATTR--------------------------------- 27

Query: 64  LNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVF 123
                       SME+L+FRELPAG N+IVAI CYTGYNQEDSVI+N S+++RG FRS+F
Sbjct: 28  ------------SMEFLKFRELPAGQNAIVAIACYTGYNQEDSVIMNQSSIDRGLFRSLF 75

Query: 124 FRSYKDAESKRIGDQE-EQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGK 182
           +R+Y D E K+IG    EQFEKP R     +++  YDKLDDDG++APG+RVSG+D++IGK
Sbjct: 76  YRAYSDQE-KQIGHSVLEQFEKPMRSETLKLKHGTYDKLDDDGLVAPGVRVSGEDIIIGK 134

Query: 183 TITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIP 242
           T  +  + +EL   TK  +KRD ST LR++E GIVDQV+++ N DG +F K+R+R+ +IP
Sbjct: 135 TAPITADAEELGQRTKAHTKRDISTPLRSTENGIVDQVLMSTNADGLRFAKVRMRTTKIP 194

Query: 243 QIGDKFASRHGQKGTCGIQYRQE------------------------------------V 266
           QIGDKFASRHGQKGT GI YRQE                                    V
Sbjct: 195 QIGDKFASRHGQKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKV 254

Query: 267 SSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQ 326
           SS +G  GDATPF + V V  +S LL+E GY  RG EVM+NGHTGRK+ AQVFLGPTYYQ
Sbjct: 255 SSLRGFEGDATPFTE-VTVDSVSRLLRENGYHSRGFEVMYNGHTGRKLVAQVFLGPTYYQ 313

Query: 327 RL 328
           RL
Sbjct: 314 RL 315


>gi|394998833|gb|AFN44335.1| RNA polymerase II second largest subunit, partial [Caloplaca
           scoriophila]
          Length = 317

 Score =  332 bits (851), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 176/364 (48%), Positives = 227/364 (62%), Gaps = 84/364 (23%)

Query: 4   YITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVI 63
           ++TN+  RMDT+A++LYYP KPL TTR                                 
Sbjct: 1   FLTNYDERMDTMANILYYPQKPLATTR--------------------------------- 27

Query: 64  LNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVF 123
                       SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FRS+F
Sbjct: 28  ------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLF 75

Query: 124 FRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGK 182
           +R+Y D E KR+G    E+FEKP R     +++  YDKLDDDG++APG+RVSGDDV+IGK
Sbjct: 76  YRAYVDTE-KRVGMTVLEKFEKPLRSETLKLKHGTYDKLDDDGLVAPGVRVSGDDVIIGK 134

Query: 183 TITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIP 242
           T  +  + +EL   +K   K+D ST LR++E GIVD+V+L+ N +G KF K+R+R+ ++P
Sbjct: 135 TTPIAPDAEELGQRSKNHIKKDASTPLRSTENGIVDKVLLSTNSEGLKFVKVRMRTTKVP 194

Query: 243 QIGDKFASRHGQKGTCGIQYRQE------------------------------------V 266
           QIGDKFASRHGQKGT GI YRQE                                    V
Sbjct: 195 QIGDKFASRHGQKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKV 254

Query: 267 SSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQ 326
           SS +G  GDATPF + + V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPTYYQ
Sbjct: 255 SSLRGYEGDATPFTE-ITVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQ 313

Query: 327 RLKH 330
           RL+H
Sbjct: 314 RLRH 317


>gi|194320265|gb|ACF48371.1| DNA-dependent RNA polymerase II second largest subunit [Ochrolechia
           trochophora]
          Length = 317

 Score =  332 bits (851), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 179/364 (49%), Positives = 224/364 (61%), Gaps = 84/364 (23%)

Query: 3   VYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSV 62
           V++TNF  RMDT++++LYYP KPL TTR                                
Sbjct: 1   VFLTNFDERMDTMSNILYYPQKPLATTR-------------------------------- 28

Query: 63  ILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSV 122
                        SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FRS+
Sbjct: 29  -------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSL 75

Query: 123 FFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIG 181
           F+R+Y D E KRIG    EQFEKP R     +++  YDKLDDDGI+APG+RVSG+D++IG
Sbjct: 76  FYRAYTDQE-KRIGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIG 134

Query: 182 KTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRI 241
           KT  +  + +EL   TK   KRD ST LR +E GIVD+V+LT N +G +F K+R+R+ +I
Sbjct: 135 KTAPMAPDAEELGQRTKLHIKRDASTPLRTTENGIVDKVLLTTNAEGLRFVKVRMRTTKI 194

Query: 242 PQIGDKFASRHGQKGTCGIQYRQE------------------------------------ 265
           PQIGDKFASRHGQKGT GI YRQE                                    
Sbjct: 195 PQIGDKFASRHGQKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSK 254

Query: 266 VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYY 325
           VSS +G  GDATPF + V V  +S LL+E+GYQ RG E M+NGHTGRK+  QVFLGPTYY
Sbjct: 255 VSSLRGFEGDATPFTE-VTVDSVSRLLREHGYQSRGFEAMYNGHTGRKLVVQVFLGPTYY 313

Query: 326 QRLK 329
           QRL+
Sbjct: 314 QRLR 317


>gi|113707345|gb|ABI36580.1| RNA polymerase II second largest subunit [Lasallia pustulata]
          Length = 709

 Score =  332 bits (850), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 182/364 (50%), Positives = 226/364 (62%), Gaps = 84/364 (23%)

Query: 3   VYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSV 62
           V++TNF  RMDT+A++LYYP KPL TTR                                
Sbjct: 393 VFLTNFDQRMDTMANILYYPQKPLATTR-------------------------------- 420

Query: 63  ILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSV 122
                        SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FRS+
Sbjct: 421 -------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSL 467

Query: 123 FFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIG 181
           F+R Y D E KRIG    EQFEKP R     +++  Y+KLDDDGI+APG+RVSG+DV+IG
Sbjct: 468 FYRCYTDQE-KRIGMSVVEQFEKPMRSDTLKVKHGTYEKLDDDGIVAPGVRVSGEDVIIG 526

Query: 182 KTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRI 241
           KT  +  + +EL   TK   KRD ST LR++E+GIVDQV+LT N +G +F K+R+R+ +I
Sbjct: 527 KTAPIAPDAEELGQRTKSHIKRDVSTPLRSTESGIVDQVLLTTNAEGLRFVKVRMRTTKI 586

Query: 242 PQIGDKFASRHGQKGTCGIQYRQE------------------------------------ 265
           PQIGDKFASRHGQKGT GI YR E                                    
Sbjct: 587 PQIGDKFASRHGQKGTIGITYRSEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSK 646

Query: 266 VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYY 325
           VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPTYY
Sbjct: 647 VSSLRGFEGDATPFTE-VTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYY 705

Query: 326 QRLK 329
           QRL+
Sbjct: 706 QRLR 709


>gi|103001369|gb|ABF71504.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
           chlorophanum]
          Length = 699

 Score =  332 bits (850), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 181/360 (50%), Positives = 223/360 (61%), Gaps = 84/360 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 387 MGVFLTNYDQRMDTMANILYYPQKPLATTR------------------------------ 416

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 417 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 461

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+RSY D E KRIG    EQFEKP R     +++  YDKLDDDGI+APG+RVSG+D++
Sbjct: 462 SLFYRSYTDQE-KRIGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDII 520

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK   KRD ST LR++E GIVDQV+LT N +G KF K+R+R+ 
Sbjct: 521 IGKTAPIAPDAEELGQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLKFVKVRMRTT 580

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 581 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTMEGVVPDLIINPHAIPSRMTIAHLIECQL 640

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 641 SKVSSLRGFEGDATPFTE-VTVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 699


>gi|88601066|gb|ABD46529.1| RNA polymerase II second largest subunit, partial [Tulasnella
           violea]
          Length = 676

 Score =  332 bits (850), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 172/361 (47%), Positives = 223/361 (61%), Gaps = 82/361 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+++TN+ +R+DT++++LYYP KPL TTR                              
Sbjct: 362 MGIFLTNYQIRVDTMSNILYYPQKPLATTR------------------------------ 391

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+V+RG FR
Sbjct: 392 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSVDRGLFR 436

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K      E+FEKP R T   M++  YDKL+DDG+IAPG  VSG+D++I
Sbjct: 437 SMYYRSYMDVEKKSGAVSVEEFEKPTRDTTLRMKHGTYDKLEDDGLIAPGTGVSGEDIII 496

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  +KRD ST L+++E GI+DQV+LT N +G KF KIRVRS R
Sbjct: 497 GKTAPIPPDSEELGQRTQTHTKRDVSTPLKSTENGIIDQVLLTTNGEGLKFVKIRVRSTR 556

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQ+GDKFASRHGQKGT GI YRQE                                   
Sbjct: 557 IPQVGDKFASRHGQKGTVGITYRQEDMPFTAEGITPDIVINPHAIPSRMTIGHLVECLLS 616

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            +++  G  GDATPF D + V+ +S LL+  GYQ RG EVM++GHTG+K+ AQV+LGPTY
Sbjct: 617 KLATLLGNEGDATPFTD-LTVESVSHLLKARGYQSRGLEVMYHGHTGKKLQAQVYLGPTY 675

Query: 325 Y 325
           Y
Sbjct: 676 Y 676


>gi|194320279|gb|ACF48379.1| DNA-dependent RNA polymerase II second largest subunit [Phyllobaeis
           erythrella]
          Length = 317

 Score =  332 bits (850), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 180/364 (49%), Positives = 225/364 (61%), Gaps = 84/364 (23%)

Query: 3   VYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSV 62
           V++TN+  RMDT+A++LYYP KPL TTR                                
Sbjct: 1   VFLTNYDERMDTMANILYYPQKPLATTR-------------------------------- 28

Query: 63  ILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSV 122
                        SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FRS+
Sbjct: 29  -------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSL 75

Query: 123 FFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIG 181
           FFR+Y D E KRIG    EQFEKP R     +++  Y+KLDDDGI+APG+RVSG+D++IG
Sbjct: 76  FFRTYTDQE-KRIGMSVVEQFEKPMRSDTLKLKHGTYEKLDDDGIVAPGVRVSGEDIIIG 134

Query: 182 KTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRI 241
           KT  +  + +EL   TK   KRD ST LR +E GIVD+V+LT N +G +F K+R+R+ ++
Sbjct: 135 KTAPIAPDAEELGQRTKLHIKRDVSTPLRTTENGIVDKVLLTTNAEGLRFVKVRMRTTKV 194

Query: 242 PQIGDKFASRHGQKGTCGIQYRQE------------------------------------ 265
           PQIGDKFASRHGQKGT GI YR E                                    
Sbjct: 195 PQIGDKFASRHGQKGTIGITYRMEDMPFTSEGIVPDLIINPHAIPSRMTIAHLIECQLSK 254

Query: 266 VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYY 325
           VSS +G  GDATPF + V V  IS LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPTYY
Sbjct: 255 VSSLRGYEGDATPFTE-VTVDSISRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYY 313

Query: 326 QRLK 329
           QRL+
Sbjct: 314 QRLR 317


>gi|46277324|gb|AAS86852.1| DNA-dependent RNA polymerase II [Hydnotryopsis sp. Trappe 17231]
          Length = 557

 Score =  332 bits (850), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 179/363 (49%), Positives = 227/363 (62%), Gaps = 84/363 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 242 MGVFLTNYRERMDTMANILYYPQKPLGTTR------------------------------ 271

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 272 ---------------SMEFLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 316

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+R+Y D E KRIG +  E+FEKP R     +++  YDKLD+DG++APG+RVSG+D++
Sbjct: 317 SLFYRTYMDQE-KRIGMNVVEEFEKPTRGNTLRLKHGTYDKLDEDGLVAPGVRVSGEDII 375

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  N +EL   TK  +KRD ST LR++E GIVDQVM+T N +G KF K+R+R+ 
Sbjct: 376 IGKTAPISPNTEELGQRTKFHTKRDVSTPLRSTENGIVDQVMVTTNQEGLKFVKVRMRTT 435

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           ++PQIGDKFASRHGQKGT GI YR E                                  
Sbjct: 436 KVPQIGDKFASRHGQKGTIGITYRNEDMPFTSEGIVPDLIINPHAIPSRMTIAHLIECQL 495

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF D V V  +S LL+E+GYQ RG E+M+NGHTGRK+  QVFLGPT
Sbjct: 496 SKVSSLRGFEGDATPFTD-VTVDSVSKLLREHGYQSRGFEIMYNGHTGRKLVVQVFLGPT 554

Query: 324 YYQ 326
           YYQ
Sbjct: 555 YYQ 557


>gi|394998801|gb|AFN44319.1| RNA polymerase II second largest subunit, partial [Brigantiaea cf.
           tricolor Gaya 70]
          Length = 317

 Score =  331 bits (849), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 177/364 (48%), Positives = 227/364 (62%), Gaps = 84/364 (23%)

Query: 4   YITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVI 63
           ++TN+  RMDT+A++LYYP KPL TTR                                 
Sbjct: 1   FLTNYESRMDTMANILYYPQKPLATTR--------------------------------- 27

Query: 64  LNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVF 123
                       SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FRS+F
Sbjct: 28  ------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLF 75

Query: 124 FRSYKDAESKRIGDQE-EQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGK 182
           +R+Y DAE KR+G    E+FEKP R     +++  YDKLDDDG++APG+RVSG+DV+IGK
Sbjct: 76  YRAYVDAE-KRVGMAVIERFEKPLRSETLKLKHGTYDKLDDDGLVAPGVRVSGEDVIIGK 134

Query: 183 TITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIP 242
           T  +  + +EL   TK   KRD ST LR++E GIVD+V+L+ N +G KF K+R+R+ +IP
Sbjct: 135 TSPIAPDAEELGQRTKMHVKRDASTPLRSTENGIVDRVLLSTNQEGLKFVKVRMRTTKIP 194

Query: 243 QIGDKFASRHGQKGTCGIQYRQE------------------------------------V 266
           QIGDKFASRHGQKGT GI YRQE                                    V
Sbjct: 195 QIGDKFASRHGQKGTIGITYRQEDMPFTSEGIVPDLIINPHAIPSRMTIAHLIECQLSKV 254

Query: 267 SSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQ 326
           SS +G  GDATPF + + V  +S LL+E+GY  RG E+M+NGHTGRK+ AQVFLGPTYYQ
Sbjct: 255 SSLRGFEGDATPFTE-ITVDSVSKLLREHGYHSRGFEIMYNGHTGRKLVAQVFLGPTYYQ 313

Query: 327 RLKH 330
           RL+H
Sbjct: 314 RLRH 317


>gi|46277310|gb|AAS86845.1| DNA-dependent RNA polymerase II [Amylascus tasmanicus]
          Length = 549

 Score =  331 bits (849), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 178/363 (49%), Positives = 226/363 (62%), Gaps = 84/363 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 234 MGVFLTNYRERMDTMANILYYPQKPLGTTR------------------------------ 263

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI+CY+GYNQEDSVI+N  +++RG FR
Sbjct: 264 ---------------SMEFLKFRELPAGQNAIVAIMCYSGYNQEDSVIMNQGSIDRGLFR 308

Query: 121 SVFFRSYKDAESKRIGDQE-EQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+FFR+Y D E +RIG    E+FEKP R     +++  YDKLDDDG++APG+RVSG+D++
Sbjct: 309 SLFFRTYMDQE-RRIGMAVVEEFEKPTRSNTLRLKHGTYDKLDDDGLVAPGVRVSGEDII 367

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  N++EL   TK  +KRD ST LR++E GIVDQVM+T N +G KF K+R+R+ 
Sbjct: 368 IGKTAPIAPNQEELGQRTKFHTKRDVSTPLRSTENGIVDQVMVTTNQEGLKFVKVRMRTT 427

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           ++PQIGDKFASRHGQKGT GI YR E                                  
Sbjct: 428 KVPQIGDKFASRHGQKGTIGITYRNEDMPFTSEGIVPDLIINPHAIPSRMTIAHLIECLL 487

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF D V V  +S LL+E+GYQ RG E+M+NGHTGRK+  QVFLGPT
Sbjct: 488 SKVSSLRGFEGDATPFTD-VTVDSVSKLLREHGYQSRGFEIMYNGHTGRKLVVQVFLGPT 546

Query: 324 YYQ 326
           YYQ
Sbjct: 547 YYQ 549


>gi|103001310|gb|ABF71501.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
           chlorophanum]
          Length = 683

 Score =  331 bits (849), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 181/360 (50%), Positives = 223/360 (61%), Gaps = 84/360 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 371 MGVFLTNYDQRMDTMANILYYPQKPLATTR------------------------------ 400

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 401 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 445

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+RSY D E KRIG    EQFEKP R     +++  YDKLDDDGI+APG+RVSG+D++
Sbjct: 446 SLFYRSYTDQE-KRIGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDII 504

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK   KRD ST LR++E GIVDQV+LT N +G KF K+R+R+ 
Sbjct: 505 IGKTAPIAPDAEELGQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLKFVKVRMRTT 564

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 565 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTMEGVVPDLIINPHAIPSRMTIAHLIECQL 624

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 625 SKVSSLRGFEGDATPFTE-VTVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 683


>gi|103001255|gb|ABF71499.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
           chlorophanum]
          Length = 691

 Score =  331 bits (849), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 181/360 (50%), Positives = 223/360 (61%), Gaps = 84/360 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 379 MGVFLTNYDQRMDTMANILYYPQKPLATTR------------------------------ 408

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 409 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 453

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+RSY D E KRIG    EQFEKP R     +++  YDKLDDDGI+APG+RVSG+D++
Sbjct: 454 SLFYRSYTDQE-KRIGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDII 512

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK   KRD ST LR++E GIVDQV+LT N +G KF K+R+R+ 
Sbjct: 513 IGKTAPIAPDAEELGQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLKFVKVRMRTT 572

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 573 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTMEGVVPDLIINPHAIPSRMTIAHLIECQL 632

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 633 SKVSSLRGFEGDATPFTE-VTVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 691


>gi|46277336|gb|AAS86858.1| DNA-dependent RNA polymerase II [Plicaria trachycarpa]
          Length = 537

 Score =  331 bits (849), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 179/363 (49%), Positives = 225/363 (61%), Gaps = 84/363 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 222 MGVFLTNYRERMDTMANILYYPQKPLGTTR------------------------------ 251

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI+CY+GYNQEDSVI+N  +++RG FR
Sbjct: 252 ---------------SMEFLKFRELPAGQNAIVAIMCYSGYNQEDSVIMNQHSIDRGLFR 296

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+FFR+Y D E KRIG    E+FEKP R     +++  YDKLDDDG++APG+RVSG+D++
Sbjct: 297 SLFFRTYMDQE-KRIGMSVVEEFEKPTRGNTLRLKHGTYDKLDDDGLVAPGVRVSGEDII 355

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  N++EL   TK  +KRD ST LR++E GIVDQVM+T N +G KF K+R+R+ 
Sbjct: 356 IGKTAPIAPNQEELGQRTKFHTKRDVSTPLRSTENGIVDQVMVTTNQEGLKFVKVRMRTT 415

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI Y  E                                  
Sbjct: 416 KIPQIGDKFASRHGQKGTIGITYXXEDXXXXXXXXVXXXIINPHAIPSRMTIAHLIECLL 475

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF D V V  +S LL+E+GYQ RG E+M+NGHTGRK+  QVFLGPT
Sbjct: 476 SKVSSLRGFEGDATPFTD-VTVDSVSKLLREHGYQSRGXEIMYNGHTGRKLVCQVFLGPT 534

Query: 324 YYQ 326
           YYQ
Sbjct: 535 YYQ 537


>gi|103001649|gb|ABF71516.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
           chlorophanum]
          Length = 691

 Score =  331 bits (849), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 181/360 (50%), Positives = 223/360 (61%), Gaps = 84/360 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 379 MGVFLTNYDQRMDTMANILYYPQKPLATTR------------------------------ 408

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 409 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 453

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+RSY D E KRIG    EQFEKP R     +++  YDKLDDDGI+APG+RVSG+D++
Sbjct: 454 SLFYRSYTDQE-KRIGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDII 512

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK   KRD ST LR++E GIVDQV+LT N +G KF K+R+R+ 
Sbjct: 513 IGKTAPISPDAEELGQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLKFVKVRMRTT 572

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 573 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTKEGVVPDLIINPHAIPSRMTIAHLIECQL 632

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 633 SKVSSLRGFEGDATPFTE-VTVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 691


>gi|113707351|gb|ABI36583.1| RNA polymerase II second largest subunit [Usnea sphacelata]
          Length = 710

 Score =  331 bits (849), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 178/364 (48%), Positives = 225/364 (61%), Gaps = 84/364 (23%)

Query: 3   VYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSV 62
           V++TN+  RMDT+A++LYYP KPL TTR                                
Sbjct: 394 VFLTNYQQRMDTMANILYYPQKPLATTR-------------------------------- 421

Query: 63  ILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSV 122
                        SME+L+FRELPAG N+IVAI CY+ YNQEDSVI+N S+++RG FRS+
Sbjct: 422 -------------SMEFLKFRELPAGQNAIVAIACYSSYNQEDSVIMNQSSIDRGLFRSL 468

Query: 123 FFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIG 181
           F+R+Y D E KRIG    EQFEKP R     +++  YDKLDDDG++APG+RVSG+D++IG
Sbjct: 469 FYRAYTDQE-KRIGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGLVAPGVRVSGEDIIIG 527

Query: 182 KTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRI 241
           KT  +  + +EL   TK   KRD ST LR++E GIVDQV+L+ N +G +F K+R+R+ +I
Sbjct: 528 KTAPIAPDAEELGQRTKLHVKRDTSTPLRSTENGIVDQVLLSTNAEGLRFVKVRMRTTKI 587

Query: 242 PQIGDKFASRHGQKGTCGIQYRQE------------------------------------ 265
           PQIGDKFASRHGQKGT GI YRQE                                    
Sbjct: 588 PQIGDKFASRHGQKGTIGITYRQEDMPFTSEGMVPDLIINPHAIPSRMTIAHLIECLLSK 647

Query: 266 VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYY 325
           VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+  QVFLGPTYY
Sbjct: 648 VSSLRGFEGDATPFTE-VTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVTQVFLGPTYY 706

Query: 326 QRLK 329
           QRL+
Sbjct: 707 QRLR 710


>gi|258562148|gb|ACV81796.1| RNA polymerase II second largest subunit [Entorrhiza casparyana]
          Length = 646

 Score =  331 bits (849), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 174/359 (48%), Positives = 221/359 (61%), Gaps = 82/359 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF VRMDT+A++LYYP KPL  TR                              
Sbjct: 334 MGIYVTNFQVRMDTMANILYYPQKPLAITR------------------------------ 363

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+LRFRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 364 ---------------SMEHLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 408

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+F+R+Y D+E K      E+FE+P R T   +++  Y+KL+ DG+IAPG RVSG+D++I
Sbjct: 409 SIFYRTYMDSEKKMGMMVMEEFERPTRDTTLRLKHGTYEKLEGDGLIAPGTRVSGEDIII 468

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   TK  +KRD ST LR++E GIVDQVM+T N +G KF K+RVRS R
Sbjct: 469 GKTAPIPPDAEELGQRTKTHTKRDVSTPLRSTENGIVDQVMITTNGEGLKFVKVRVRSTR 528

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           +PQ+GDKFASRHGQKGT G+ YRQE                                   
Sbjct: 529 VPQVGDKFASRHGQKGTIGVTYRQEDMPFTVEGITPDLIINPHAIPSRMTIGHLVECLLS 588

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
            VS+  G  GDATPF D V V+ +S +L+  GYQ RG EVM+NGHTG+K+ AQVFLGPT
Sbjct: 589 KVSTIAGNEGDATPFTD-VTVEAVSKILRANGYQSRGFEVMYNGHTGQKLAAQVFLGPT 646


>gi|194320282|gb|ACF48381.1| DNA-dependent RNA polymerase II second largest subunit [Phyllobaeis
           imbricata]
          Length = 317

 Score =  331 bits (849), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 179/364 (49%), Positives = 225/364 (61%), Gaps = 84/364 (23%)

Query: 3   VYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSV 62
           V++TN+  RMDT+A++LYYP KPL TTR                                
Sbjct: 1   VFLTNYDERMDTMANILYYPQKPLATTR-------------------------------- 28

Query: 63  ILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSV 122
                        SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FRS+
Sbjct: 29  -------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSL 75

Query: 123 FFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIG 181
           FFR+Y D E KRIG    EQFEKP R     +++  Y+KLDDDGI+APG+RVSG+D++IG
Sbjct: 76  FFRTYTDQE-KRIGMSVVEQFEKPMRSDTLKLKHGTYEKLDDDGIVAPGVRVSGEDIIIG 134

Query: 182 KTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRI 241
           KT  +  + +EL   TK   KRD ST LR +E GIVD+V+LT N +G +F K+R+R+ ++
Sbjct: 135 KTAPIAPDAEELGQRTKLHIKRDVSTPLRTTENGIVDKVLLTTNAEGLRFVKVRMRTTKV 194

Query: 242 PQIGDKFASRHGQKGTCGIQYRQE------------------------------------ 265
           PQIGDKFASRHGQKGT GI YR E                                    
Sbjct: 195 PQIGDKFASRHGQKGTIGITYRMEDMPFTSEGIVPDLIINPHAIPSRMTIAHLIECQLSK 254

Query: 266 VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYY 325
           VSS +G  GDATPF + V V  IS LL+E+GYQ RG E+M+NGHTGRK+ AQVFLGPTYY
Sbjct: 255 VSSLRGYEGDATPFTE-VTVDSISRLLREHGYQSRGFEIMYNGHTGRKLVAQVFLGPTYY 313

Query: 326 QRLK 329
           QRL+
Sbjct: 314 QRLR 317


>gi|103001354|gb|ABF71503.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
           chlorophanum]
          Length = 687

 Score =  331 bits (848), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 181/360 (50%), Positives = 223/360 (61%), Gaps = 84/360 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 375 MGVFLTNYDQRMDTMANILYYPQKPLATTR------------------------------ 404

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 405 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 449

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+RSY D E KRIG    EQFEKP R     +++  YDKLDDDGI+APG+RVSG+D++
Sbjct: 450 SLFYRSYTDQE-KRIGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDII 508

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK   KRD ST LR++E GIVDQV+LT N +G KF K+R+R+ 
Sbjct: 509 IGKTAPIAPDAEELGQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLKFVKVRMRTT 568

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 569 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTMEGVVPDLIINPHAIPSRMTIAHLIECQL 628

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 629 SKVSSLRGFEGDATPFTE-VTVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 687


>gi|56759090|gb|AAW27685.1| SJCHGC09486 protein [Schistosoma japonicum]
          Length = 204

 Score =  331 bits (848), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 151/186 (81%), Positives = 172/186 (92%)

Query: 265 EVSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
           +VS+NKGEIGDATPFNDAVNV+KIS LLQEYGYQ  GNE+M+NG TGRK+N+Q+FLGPTY
Sbjct: 13  KVSANKGEIGDATPFNDAVNVRKISLLLQEYGYQHTGNEIMYNGFTGRKLNSQIFLGPTY 72

Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
           YQRLKHMVDDKIHSR+RGPVQIL RQPMEGR+RDGGLRFGEMERDCQI+HGAAQFLRERL
Sbjct: 73  YQRLKHMVDDKIHSRSRGPVQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERL 132

Query: 385 FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
           F  SDPY+++VCN CGLIAIA+ RN T+EC+ CKN TQIS V+LPYA KLLFQELMSM+I
Sbjct: 133 FFASDPYQVYVCNLCGLIAIAHQRNKTYECRSCKNTTQISLVKLPYACKLLFQELMSMSI 192

Query: 445 APRLMV 450
           APR+M+
Sbjct: 193 APRMMI 198


>gi|394998859|gb|AFN44348.1| RNA polymerase II second largest subunit, partial [Megalospora
           sulphurata]
          Length = 317

 Score =  331 bits (848), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 176/364 (48%), Positives = 227/364 (62%), Gaps = 84/364 (23%)

Query: 4   YITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVI 63
           ++TN+  RMDT+A++LYYP KPL TTR                                 
Sbjct: 1   FLTNYDERMDTMANILYYPQKPLATTR--------------------------------- 27

Query: 64  LNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVF 123
                       SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FRS+F
Sbjct: 28  ------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLF 75

Query: 124 FRSYKDAESKRIGDQE-EQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGK 182
           +R+Y D E KR+G Q  E FEKP R     +++  YDKLD+DG++APG+RVSG+DV+IGK
Sbjct: 76  YRAYVDTE-KRVGMQVLESFEKPLRSETLKLKHGTYDKLDNDGLVAPGVRVSGEDVIIGK 134

Query: 183 TITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIP 242
           T  +  + +E+   TK   K+D ST LR++E GIVD+V+L+ N +G KF K+R+R+ +IP
Sbjct: 135 TTPIAPDAEEMGQRTKAHIKKDASTPLRSTENGIVDRVLLSTNSEGLKFVKVRMRTTKIP 194

Query: 243 QIGDKFASRHGQKGTCGIQYRQE------------------------------------V 266
           QIGDKFASRHGQKGT GI YRQE                                    V
Sbjct: 195 QIGDKFASRHGQKGTIGITYRQEDMPFTSEGMVPDIIINPHAIPSRMTIAHLIECQLSKV 254

Query: 267 SSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQ 326
           SS +G  GDATPF + + V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPTYYQ
Sbjct: 255 SSLRGYEGDATPFTE-ITVDSVSNLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQ 313

Query: 327 RLKH 330
           RL+H
Sbjct: 314 RLRH 317


>gi|110734400|gb|ABG88855.1| RNA polymerase II second largest subunit [Mrakia frigida]
          Length = 705

 Score =  331 bits (848), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 170/362 (46%), Positives = 223/362 (61%), Gaps = 82/362 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+ +RMDT+A++LYYP KPL TTR                              
Sbjct: 390 MGIYLTNYQIRMDTMANILYYPQKPLATTR------------------------------ 419

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 420 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 464

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY+D E K      E+FEKP R +   ++   YDKLD DG+++PG+ V+G+D++I
Sbjct: 465 SMYYRSYQDVEKKNGMVSLEEFEKPTRDSTLRLKQGTYDKLDADGLVSPGVGVNGEDIII 524

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P++ +EL       +KRD ST L+++E GIVDQV++T N DG KF KIRVRS R
Sbjct: 525 GKTAPIPKDSEELGQRQATHTKRDVSTPLKSTEQGIVDQVLVTTNADGLKFVKIRVRSTR 584

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           +PQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 585 VPQIGDKFASRHGQKGTVGITYRQEDMPFTSEGITPDIIINPHAIPSRMTIGHLVECLLS 644

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            +++  G  GDATPF D + V+ +S  L++ GYQ RG EVM++GHTGRK+ AQV+LGPTY
Sbjct: 645 KLATLLGTEGDATPFTD-LTVEAVSARLKDKGYQSRGLEVMYHGHTGRKLQAQVYLGPTY 703

Query: 325 YQ 326
           YQ
Sbjct: 704 YQ 705


>gi|394998863|gb|AFN44350.1| RNA polymerase II second largest subunit, partial [Seirophora
           contortuplicata]
          Length = 316

 Score =  331 bits (848), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 177/363 (48%), Positives = 226/363 (62%), Gaps = 84/363 (23%)

Query: 4   YITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVI 63
           ++TN+  RMDT+A++LYYP KPL TTR                                 
Sbjct: 1   FLTNYDERMDTMANILYYPQKPLATTR--------------------------------- 27

Query: 64  LNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVF 123
                       SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FRS+F
Sbjct: 28  ------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLF 75

Query: 124 FRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGK 182
           +R+Y D E KR+G    E+FEKP R     +++  YDKLDDDG++APG+RVSGDDV+IGK
Sbjct: 76  YRAYVDTE-KRVGMTVLEKFEKPLRSETLKLKHGTYDKLDDDGLVAPGVRVSGDDVIIGK 134

Query: 183 TITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIP 242
           T  +  + +EL   TK   K+D ST LR++E GIVD+V+L+ N +G KF K+R+R+ +IP
Sbjct: 135 TTPIAPDAEELGQRTKNHIKKDASTPLRSTENGIVDKVLLSTNSEGLKFVKVRMRTTKIP 194

Query: 243 QIGDKFASRHGQKGTCGIQYRQE------------------------------------V 266
           QIGDKFASRHGQKGT GI YRQE                                    V
Sbjct: 195 QIGDKFASRHGQKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKV 254

Query: 267 SSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQ 326
           SS +G  GDATPF + + V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPTYYQ
Sbjct: 255 SSLRGYEGDATPFTE-ITVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQ 313

Query: 327 RLK 329
           RL+
Sbjct: 314 RLR 316


>gi|394998809|gb|AFN44323.1| RNA polymerase II second largest subunit, partial [Caloplaca
           carphinea]
          Length = 317

 Score =  331 bits (848), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 176/362 (48%), Positives = 225/362 (62%), Gaps = 84/362 (23%)

Query: 6   TNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILN 65
           TN+  RMDT+A++LYYP KPL TTR                                   
Sbjct: 3   TNYDERMDTMANILYYPQKPLATTR----------------------------------- 27

Query: 66  ASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFR 125
                     SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FRS+F+R
Sbjct: 28  ----------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYR 77

Query: 126 SYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTI 184
           +Y D E KR+G    E+FEKP R     +++  YDKLDDDG++APG+RVSGDDV+IGKT 
Sbjct: 78  AYVDTE-KRVGMTVLEKFEKPLRSETLKLKHGTYDKLDDDGLVAPGVRVSGDDVIIGKTT 136

Query: 185 TLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQI 244
            +  + +EL   +K   K+D ST LR++E GIVD+V+L+ N +G KF K+R+R+ ++PQI
Sbjct: 137 PIAPDAEELGQRSKTHVKKDASTPLRSTENGIVDKVLLSTNSEGLKFVKVRMRTTKVPQI 196

Query: 245 GDKFASRHGQKGTCGIQYRQE------------------------------------VSS 268
           GDKFASRHGQKGT GI YRQE                                    VSS
Sbjct: 197 GDKFASRHGQKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSS 256

Query: 269 NKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQRL 328
            +G  GDATPF + + V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPTYYQRL
Sbjct: 257 LRGYEGDATPFTE-ITVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRL 315

Query: 329 KH 330
           +H
Sbjct: 316 RH 317


>gi|67942338|gb|AAY83369.1| DNA-dependent RNA polymerase II [Donadinia sp. mh669]
          Length = 561

 Score =  331 bits (848), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 180/360 (50%), Positives = 223/360 (61%), Gaps = 84/360 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TNF  RMDT+A++LYYP KPL TTR                              
Sbjct: 249 MGVFLTNFAERMDTMANILYYPQKPLATTR------------------------------ 278

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IV I+CY+GYNQEDSVI+N S+++RG FR
Sbjct: 279 ---------------SMEYLKFRELPAGQNAIVGIMCYSGYNQEDSVIMNQSSIDRGLFR 323

Query: 121 SVFFRSYKDAESKRIGDQ-EEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+RSY D E KRIG Q  E+FEKP R     +++  YDKLD+DG++APG+RVSG+D++
Sbjct: 324 SLFYRSYMDQE-KRIGMQVVEEFEKPQRTNTLKLKHGTYDKLDEDGLVAPGVRVSGEDII 382

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + DE+    K  +KRD ST LR++E GIVDQVMLT N +G KF K+R+R+ 
Sbjct: 383 IGKTAPIAPDVDEMGQRQKYHTKRDVSTPLRSTENGIVDQVMLTTNAEGLKFVKVRMRTT 442

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 443 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTCEGIVPDLIINPHAIPSRMTIAHLIECQL 502

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF D V V  +S+LL+  GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 503 SKVSSLRGMEGDATPFTD-VTVDSVSSLLRAEGYQSRGFEVMYNGHTGRKLVAQVFLGPT 561


>gi|52699804|gb|AAU86964.1| DNA-dependent RNA polymerase II second largest subunit [Dibaeis
           baeomyces]
          Length = 711

 Score =  330 bits (847), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 178/370 (48%), Positives = 223/370 (60%), Gaps = 84/370 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG     F  RMD   ++LYYP KPL TTR                              
Sbjct: 389 MGXXXXXFSERMDNAXNILYYPQKPLATTR------------------------------ 418

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 419 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNXSSIDRGLFR 463

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+++R+Y D E KR+G    EQFEKP R     +++  YDKLDDDG++APG+R+SG+D++
Sbjct: 464 SLYYRTYTDQE-KRVGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGLVAPGVRISGEDII 522

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK   KRD ST LR +E G+VD+VML+ N +G +F K+R R+ 
Sbjct: 523 IGKTEPIAPDSEELGQRTKLHVKRDKSTPLRTTENGLVDKVMLSTNAEGLRFVKVRTRTT 582

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 583 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGIVPDLIINPHAIPSRMTIAHLIECQL 642

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPT
Sbjct: 643 SKVSSLRGYEGDATPFTE-VTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPT 701

Query: 324 YYQRLKHMVD 333
           YYQRL+HMVD
Sbjct: 702 YYQRLRHMVD 711


>gi|394998803|gb|AFN44320.1| RNA polymerase II second largest subunit, partial [Brigantiaea
           fuscolutea]
          Length = 317

 Score =  330 bits (847), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 177/364 (48%), Positives = 226/364 (62%), Gaps = 84/364 (23%)

Query: 4   YITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVI 63
           ++TN+  RMDT+A++LYYP KPL TTR                                 
Sbjct: 1   FLTNYESRMDTMANILYYPQKPLATTR--------------------------------- 27

Query: 64  LNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVF 123
                       SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FRS+F
Sbjct: 28  ------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLF 75

Query: 124 FRSYKDAESKRIGDQE-EQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGK 182
           +R+Y DAE KR+G    E+FEKP R     +++  YDKLDDDG++APG+RVSG+DV+IGK
Sbjct: 76  YRAYVDAE-KRVGMAVIEKFEKPLRSETLKLKHGTYDKLDDDGLVAPGVRVSGEDVIIGK 134

Query: 183 TITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIP 242
           T  +  + +EL   TK   KRD ST LR++E GIVD+V+L+ N +G KF K+R+R+ +IP
Sbjct: 135 TSPIAPDAEELGQRTKMHVKRDASTPLRSTENGIVDRVLLSTNQEGLKFVKVRMRTTKIP 194

Query: 243 QIGDKFASRHGQKGTCGIQYRQE------------------------------------V 266
           QIGDKFASRHGQKGT GI YRQE                                    V
Sbjct: 195 QIGDKFASRHGQKGTIGITYRQEDMPFTAEGVVPDLIINPHAIPSRMTIAHLIECQLSKV 254

Query: 267 SSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQ 326
           SS +G  GDATPF + + V  +S LL+E+GY  RG EVM+NGHTGRK+  QVFLGPTYYQ
Sbjct: 255 SSLRGFEGDATPFTE-ITVDSVSKLLREHGYHSRGFEVMYNGHTGRKLVGQVFLGPTYYQ 313

Query: 327 RLKH 330
           RL+H
Sbjct: 314 RLRH 317


>gi|46277376|gb|AAS86878.1| DNA-dependent RNA polymerase II [Peziza varia]
 gi|46277380|gb|AAS86880.1| DNA-dependent RNA polymerase II [Peziza varia]
          Length = 563

 Score =  330 bits (847), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 179/363 (49%), Positives = 227/363 (62%), Gaps = 84/363 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 248 MGVFLTNYRERMDTMANILYYPQKPLGTTR------------------------------ 277

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 278 ---------------SMEFLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 322

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+R+Y D E KR+G +  E+FEKP R     +++  YDKLD+DG++APG+RVSG+D++
Sbjct: 323 SLFYRTYMDQE-KRVGMNVVEEFEKPTRGNTLRLKHGTYDKLDEDGLVAPGVRVSGEDII 381

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  N +EL   TK  +KRD ST LR++E GIVDQVM+T N +G KF K+R+R+ 
Sbjct: 382 IGKTAPISPNMEELGQRTKFHTKRDVSTPLRSTENGIVDQVMVTTNQEGLKFVKVRMRTT 441

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YR E                                  
Sbjct: 442 KIPQIGDKFASRHGQKGTIGITYRNEDMPFTSEGVVPDIIINPHAIPSRMTIAHLIECQL 501

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF D V V  +S LL+E+GYQ RG E+M+NGHTGRK+  QVFLGPT
Sbjct: 502 SKVSSLRGFEGDATPFTD-VTVDSVSRLLREHGYQSRGFEIMYNGHTGRKLVVQVFLGPT 560

Query: 324 YYQ 326
           YYQ
Sbjct: 561 YYQ 563


>gi|194320186|gb|ACF48322.1| DNA-dependent RNA polymerase II second largest subunit [Amandinea
           punctata]
          Length = 317

 Score =  330 bits (847), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 177/363 (48%), Positives = 223/363 (61%), Gaps = 82/363 (22%)

Query: 3   VYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSV 62
           V++TN+  RM+T+AH+LYYP KPL TTR                                
Sbjct: 1   VFLTNYDQRMETMAHILYYPQKPLATTR-------------------------------- 28

Query: 63  ILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSV 122
                        SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FRS+
Sbjct: 29  -------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSL 75

Query: 123 FFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGK 182
           F+RSY D ES+   +  E FEKP R     +++  YDKLDDDGII PG RVSG+D++IGK
Sbjct: 76  FYRSYHDQESRIGMNIVECFEKPMRSNTMKLKHGTYDKLDDDGIIIPGYRVSGEDIIIGK 135

Query: 183 TITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIP 242
           T  +  + +EL    K   KRD ST LR++E+G+VDQV+LT N +G +F K+R+R+ +IP
Sbjct: 136 TAPITADAEELGQGAKYQDKRDASTPLRSTESGLVDQVLLTTNAEGLRFVKVRMRTTKIP 195

Query: 243 QIGDKFASRHGQKGTCGIQYRQE------------------------------------V 266
           QIGDKFASRHGQKGT GI YRQE                                    V
Sbjct: 196 QIGDKFASRHGQKGTIGITYRQEDMPFTSEGVIPDLIINPHAIPSRMTIAHLIECQLSKV 255

Query: 267 SSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQ 326
           SS +G  GDATPF D V V ++S LL++ GYQ RG EVM+NGHTGRK+ AQVFLGPTYYQ
Sbjct: 256 SSLRGLEGDATPFTD-VTVDQVSRLLRDEGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQ 314

Query: 327 RLK 329
           RL+
Sbjct: 315 RLR 317


>gi|46277332|gb|AAS86856.1| DNA-dependent RNA polymerase II [Peziza saniosa]
          Length = 550

 Score =  330 bits (847), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 179/359 (49%), Positives = 225/359 (62%), Gaps = 84/359 (23%)

Query: 5   ITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVIL 64
           +TN+  RMDT+A++LYYP KPL TTR                                  
Sbjct: 239 LTNYRXRMDTMANILYYPQKPLGTTR---------------------------------- 264

Query: 65  NASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFF 124
                      SME+L+FRELPAG N+IVAI+CY+GYNQEDSVI+N S+++RG FRS+FF
Sbjct: 265 -----------SMEFLKFRELPAGQNAIVAIMCYSGYNQEDSVIMNQSSIDRGLFRSLFF 313

Query: 125 RSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKT 183
           R+Y D E KRIG    E+FEKP R     +++  YDKLD+DG++APG+RVSG+D++IGKT
Sbjct: 314 RTYMDQE-KRIGMSVVEEFEKPTRGNTLRLKHGTYDKLDEDGLVAPGVRVSGEDIIIGKT 372

Query: 184 ITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQ 243
             +  N++EL   TK  +KRD ST LR++E GIVDQVM+T N +G KF K+R+R+ +IPQ
Sbjct: 373 APIAPNQEELGQRTKFHTKRDVSTPLRSTENGIVDQVMVTTNQEGLKFVKVRMRTTKIPQ 432

Query: 244 IGDKFASRHGQKGTCGIQYRQE------------------------------------VS 267
           IGDKFASRHGQKGT GI YR E                                    VS
Sbjct: 433 IGDKFASRHGQKGTIGITYRNEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECLLSKVS 492

Query: 268 SNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQ 326
           S +G  GDATPF D V V  +STLL+E+GYQ RG E+M+NGHTGRK+ AQVFLGPTYYQ
Sbjct: 493 SLRGFEGDATPFTD-VTVDSVSTLLREHGYQSRGFEIMYNGHTGRKMVAQVFLGPTYYQ 550


>gi|394998881|gb|AFN44359.1| RNA polymerase II second largest subunit, partial [Xanthoria
           ulophyllodes]
          Length = 577

 Score =  330 bits (847), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 176/364 (48%), Positives = 226/364 (62%), Gaps = 84/364 (23%)

Query: 4   YITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVI 63
           ++TN+  RMDT+A++LYYP KPL TTR                                 
Sbjct: 261 FLTNYDERMDTMANILYYPQKPLATTR--------------------------------- 287

Query: 64  LNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVF 123
                       SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FRS+F
Sbjct: 288 ------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLF 335

Query: 124 FRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGK 182
           +R+Y D E KR+G    E+FEKP R     +++  YDKLDDDG++APG+RVSG+DV+IGK
Sbjct: 336 YRAYVDTE-KRVGMTVLEKFEKPLRTETLKLKHGTYDKLDDDGLVAPGVRVSGEDVIIGK 394

Query: 183 TITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIP 242
           T  +  +  E+   TK   K+D ST LR++E GIVD+V+L+ N +G KF K+R+R+ +IP
Sbjct: 395 TTPIAPDAQEMGQRTKNHIKKDASTPLRSTENGIVDKVLLSTNSEGLKFVKVRMRTTKIP 454

Query: 243 QIGDKFASRHGQKGTCGIQYRQE------------------------------------V 266
           QIGDKFASRHGQKGT GI YRQE                                    V
Sbjct: 455 QIGDKFASRHGQKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKV 514

Query: 267 SSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQ 326
           SS +G  GDATPF + + V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPTYYQ
Sbjct: 515 SSLRGYEGDATPFTE-ITVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQ 573

Query: 327 RLKH 330
           RL+H
Sbjct: 574 RLRH 577


>gi|394998829|gb|AFN44333.1| RNA polymerase II second largest subunit, partial [Caloplaca
           isidiigera]
          Length = 317

 Score =  330 bits (846), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 177/364 (48%), Positives = 225/364 (61%), Gaps = 84/364 (23%)

Query: 4   YITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVI 63
           + TN+  RMDT+A++LYYP KPL TTR                                 
Sbjct: 1   FXTNYDERMDTMANILYYPQKPLATTR--------------------------------- 27

Query: 64  LNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVF 123
                       SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FRS+F
Sbjct: 28  ------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLF 75

Query: 124 FRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGK 182
           +R+Y D E KR+G    E+FEKP R     +++  YDKLDDDG++APG+RVSGDDV+IGK
Sbjct: 76  YRAYVDTE-KRVGMTVLEKFEKPLRSETLKLKHGTYDKLDDDGLVAPGVRVSGDDVIIGK 134

Query: 183 TITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIP 242
           T  +  + +EL   TK   K+D ST LR++E GIVD+V+L+ N +G KF K+R+R+ +IP
Sbjct: 135 TTPIAPDAEELGQRTKNHIKKDASTPLRSTENGIVDKVLLSTNSEGLKFVKVRMRTTKIP 194

Query: 243 QIGDKFASRHGQKGTCGIQYRQE------------------------------------V 266
           QIGDKFASRHGQKGT GI YRQE                                    V
Sbjct: 195 QIGDKFASRHGQKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKV 254

Query: 267 SSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQ 326
           SS +G  GDATPF + + V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVF GPTYYQ
Sbjct: 255 SSLRGYEGDATPFTE-ITVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFXGPTYYQ 313

Query: 327 RLKH 330
           RL+H
Sbjct: 314 RLRH 317


>gi|88601072|gb|ABD46532.1| RNA polymerase II second largest subunit, partial [Vuilleminia
           comedens]
          Length = 880

 Score =  330 bits (846), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 170/361 (47%), Positives = 224/361 (62%), Gaps = 82/361 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF VRMDT+A++LYYP KPL TTR                              
Sbjct: 566 MGIYLTNFLVRMDTMANILYYPQKPLATTR------------------------------ 595

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAI+CY+GYNQEDSVI+N S+V+RG FR
Sbjct: 596 ---------------SMEYLKFRELPAGQNAIVAIMCYSGYNQEDSVIMNQSSVDRGLFR 640

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    + E+F KP R T   M++  YDK++DDG+IAPG  V+G+D++I
Sbjct: 641 SMYYRSYMDVEKKSGVQELEKFMKPTRDTTLRMKHGTYDKIEDDGLIAPGTNVNGEDIII 700

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E G VDQV+LT N DG KF K+R+RS R
Sbjct: 701 GKTAPIPPDSEELGQRTRGHTRRDVSTPLKSTEQGTVDQVLLTTNADGQKFVKVRIRSTR 760

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 761 IPQIGDKFASRHGQKGTVGITYRQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLS 820

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G+ GDATPF + + V+ +S  L++ GYQ RG E+M++GHTG+K+NAQ++LGPTY
Sbjct: 821 KVATLLGQEGDATPFTE-LTVESVSKYLRDRGYQSRGLEIMYHGHTGKKLNAQIYLGPTY 879

Query: 325 Y 325
           Y
Sbjct: 880 Y 880


>gi|394998869|gb|AFN44353.1| RNA polymerase II second largest subunit, partial [Teloschistes
           exilis]
          Length = 585

 Score =  330 bits (846), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 175/364 (48%), Positives = 226/364 (62%), Gaps = 84/364 (23%)

Query: 4   YITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVI 63
           ++TN+  RMDT+A++LYYP KPL TTR                                 
Sbjct: 269 FLTNYDERMDTMANILYYPQKPLATTR--------------------------------- 295

Query: 64  LNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVF 123
                       SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FRS+F
Sbjct: 296 ------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLF 343

Query: 124 FRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGK 182
           +R+Y D E KR+G    E+FEKP R     +++  YDKLDDDG++APG+RVSGDDV+IGK
Sbjct: 344 YRAYVDTE-KRVGMTVLEKFEKPLRSETLKLKHGTYDKLDDDGLVAPGVRVSGDDVIIGK 402

Query: 183 TITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIP 242
           T  +  + +E+   TK   K+D ST LR++E GIVD+V+L+ N +G KF K+R+R+ ++P
Sbjct: 403 TTPIAPDAEEMGQRTKNHIKKDASTPLRSTENGIVDKVLLSTNSEGLKFVKVRMRTTKVP 462

Query: 243 QIGDKFASRHGQKGTCGIQYRQE------------------------------------V 266
           QIGDKFASRHGQKGT GI YRQE                                    V
Sbjct: 463 QIGDKFASRHGQKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKV 522

Query: 267 SSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQ 326
           SS +G  GDATPF + + V  +S LL+E+GYQ RG EVM+NGHTGRK+  QVFLGPTYYQ
Sbjct: 523 SSLRGYEGDATPFTE-ITVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVVQVFLGPTYYQ 581

Query: 327 RLKH 330
           RL+H
Sbjct: 582 RLRH 585


>gi|394998879|gb|AFN44358.1| RNA polymerase II second largest subunit, partial [Xanthomendoza
           poeltii]
          Length = 585

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 176/364 (48%), Positives = 226/364 (62%), Gaps = 84/364 (23%)

Query: 4   YITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVI 63
           ++TN+  RMDT+A++LYYP KPL TTR                                 
Sbjct: 269 FLTNYDERMDTMANILYYPQKPLATTR--------------------------------- 295

Query: 64  LNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVF 123
                       SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FRS+F
Sbjct: 296 ------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLF 343

Query: 124 FRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGK 182
           +R+Y D E KR+G    E+FEKP R     +++  YDKLDDDG++APG+RVSG+DV+IGK
Sbjct: 344 YRAYVDTE-KRVGMTVLEKFEKPLRTETLKLKHGTYDKLDDDGLVAPGVRVSGEDVIIGK 402

Query: 183 TITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIP 242
           T  +  +  E+   TK   K+D ST LR++E GIVD+V+L+ N +G KF K+R+R+ +IP
Sbjct: 403 TTPIAPDAQEMGQRTKNHIKKDASTPLRSTENGIVDKVLLSTNSEGLKFVKVRMRTTKIP 462

Query: 243 QIGDKFASRHGQKGTCGIQYRQE------------------------------------V 266
           QIGDKFASRHGQKGT GI YRQE                                    V
Sbjct: 463 QIGDKFASRHGQKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKV 522

Query: 267 SSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQ 326
           SS +G  GDATPF + + V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPTYYQ
Sbjct: 523 SSLRGYEGDATPFTE-ITVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQ 581

Query: 327 RLKH 330
           RL+H
Sbjct: 582 RLRH 585


>gi|110669608|gb|ABG81899.1| RNA polymerase II second largest subunit [Agonimia sp. AFTOL 684]
          Length = 718

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 178/372 (47%), Positives = 227/372 (61%), Gaps = 82/372 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TNF  RM+T+A++LYYP KPL   R+M                            
Sbjct: 393 MGVFLTNFDQRMETMANILYYPQKPLA--RTM---------------------------- 422

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 423 ---------------SMEYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 467

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+F+R+Y+D E     +  EQFE+P R     M++  YDK+D DGI+  G RV G+D++I
Sbjct: 468 SLFYRTYQDQEKVVGHNVLEQFERPTRADTLRMKHGTYDKIDIDGIVEVGARVYGEDIII 527

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +  + +EL    K+  KRD ST LR++ETGIVDQV++T   DG KF K+RVR+ +
Sbjct: 528 GKTAPMAPDAEELGQRQKQHLKRDVSTPLRSTETGIVDQVLVTTTGDGNKFVKVRVRTTK 587

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 588 IPQIGDKFASRHGQKGTIGITYRQEDMSFTREGVVPDLIINPHAIPSRMTIAHLIECQLS 647

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++ +G+ GDATPF   V V  +S +L+  GYQ RG EVM+NGHTGRK+ AQ+FLGPTY
Sbjct: 648 KVATLRGDEGDATPFT-KVTVTNVSNILRSMGYQSRGFEVMYNGHTGRKLVAQIFLGPTY 706

Query: 325 YQRLKHMVDDKI 336
           YQRL+HMVDDKI
Sbjct: 707 YQRLRHMVDDKI 718


>gi|194320268|gb|ACF48373.1| DNA-dependent RNA polymerase II second largest subunit [Ochrolechia
           yasudae]
          Length = 317

 Score =  330 bits (845), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 178/364 (48%), Positives = 224/364 (61%), Gaps = 84/364 (23%)

Query: 3   VYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSV 62
           V++TNF  RMDT++++LYYP KPL TTR                                
Sbjct: 1   VFLTNFDERMDTMSNILYYPQKPLATTR-------------------------------- 28

Query: 63  ILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSV 122
                        SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FRS+
Sbjct: 29  -------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSL 75

Query: 123 FFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIG 181
           F+R+Y D E KRIG    EQFEKP R     +++  YDKLD+DGI+APG+RVSG+D++IG
Sbjct: 76  FYRAYTDQE-KRIGMSVVEQFEKPMRSDTLKLKHGTYDKLDEDGIVAPGVRVSGEDIIIG 134

Query: 182 KTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRI 241
           KT  +  + +EL   TK   KRD ST LR +E GIVD+V+LT N +G +F K+R+R+ +I
Sbjct: 135 KTAPIAPDAEELGQRTKLHIKRDASTPLRTTENGIVDKVLLTTNAEGLRFVKVRMRTTKI 194

Query: 242 PQIGDKFASRHGQKGTCGIQYRQE------------------------------------ 265
           PQIGDKFASRHGQKGT GI YRQE                                    
Sbjct: 195 PQIGDKFASRHGQKGTIGITYRQEDMPFTSEGIVPDLIINPHAIPSRMTIAHLIECQLSK 254

Query: 266 VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYY 325
           VSS +G  GDATPF + V V  +S LL+E+GYQ RG E M+NGHTGRK+  QVFLGPTYY
Sbjct: 255 VSSLRGFEGDATPFTE-VTVDSVSRLLREHGYQSRGFEAMYNGHTGRKLVVQVFLGPTYY 313

Query: 326 QRLK 329
           QRL+
Sbjct: 314 QRLR 317


>gi|309753162|gb|ADO85604.1| DNA-dependent RNA polymerase II, partial [Morchella elata]
 gi|309753164|gb|ADO85605.1| DNA-dependent RNA polymerase II, partial [Morchella elata]
          Length = 312

 Score =  330 bits (845), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 181/359 (50%), Positives = 224/359 (62%), Gaps = 84/359 (23%)

Query: 8   FHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNAS 67
           F  RMDT+A++LYYP KPL TTR                                     
Sbjct: 1   FAERMDTMANILYYPQKPLATTR------------------------------------- 23

Query: 68  AVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFRSY 127
                   SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FRS+F+RSY
Sbjct: 24  --------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSLFYRSY 75

Query: 128 KDAESKRIGDQ-EEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITL 186
            D E KRIG Q  E+FEKP R     +++  YDKLD+DG++APG+RVSG+D++IGKT  +
Sbjct: 76  MDQE-KRIGMQVVEEFEKPTRANTLKLKHGTYDKLDEDGLVAPGVRVSGEDIIIGKTAPI 134

Query: 187 PENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGD 246
             + DE+    K  +KRD ST LR++E GIVDQVMLT N +G KF K+R+R+ +IPQIGD
Sbjct: 135 APDVDEMGQRQKFHTKRDVSTPLRSTENGIVDQVMLTTNAEGLKFVKVRMRTTKIPQIGD 194

Query: 247 KFASRHGQKGTCGIQYRQE------------------------------------VSSNK 270
           KFASRHGQKGT GI YRQE                                    VSS +
Sbjct: 195 KFASRHGQKGTVGITYRQEDMPFTCEGIVPDLIINPHAIPSRMTIAHLIECQLSKVSSLR 254

Query: 271 GEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQRLK 329
           G  GDATPF D V V+ +STLL++ GYQ RG EVM+NG+TGRK+  QVFLGPTYYQRL+
Sbjct: 255 GFEGDATPFTD-VTVESVSTLLRQNGYQSRGFEVMYNGYTGRKLVCQVFLGPTYYQRLR 312


>gi|300394692|gb|ADK11884.1| DNA-directed RNA polymerase II subunit two, partial [Coniophora
           arida var. suffocata]
          Length = 686

 Score =  330 bits (845), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 173/356 (48%), Positives = 221/356 (62%), Gaps = 82/356 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF VRMDT+A++LYYP KPL TTR                              
Sbjct: 377 MGIYLTNFLVRMDTMANILYYPQKPLATTR------------------------------ 406

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 407 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 451

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP R T   M++  YDK++DDG+IAPG  VSG+D++I
Sbjct: 452 SIYYRSYMDLEKKSGIQQLEEFEKPTRDTTLRMKHGTYDKIEDDGLIAPGTGVSGEDIII 511

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RDGST L+++E GIVDQV++T N +G KF K+RVRS R
Sbjct: 512 GKTAPIPPDSEELGQRTRTHTRRDGSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTR 571

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 572 IPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLS 631

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFL 320
            V++  G  GDATPF D + V+ +ST L++ GYQ RG EVM++GHTGRK+ AQV+L
Sbjct: 632 KVATLIGNEGDATPFTD-LTVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQAQVYL 686


>gi|394998813|gb|AFN44325.1| RNA polymerase II second largest subunit, partial [Caloplaca
           chalybaea]
          Length = 317

 Score =  330 bits (845), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 177/364 (48%), Positives = 224/364 (61%), Gaps = 84/364 (23%)

Query: 4   YITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVI 63
           ++TN+  RMDT+A++LYYP KPL TTR                                 
Sbjct: 1   FLTNYDERMDTMANILYYPQKPLATTR--------------------------------- 27

Query: 64  LNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVF 123
                       SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FRS+F
Sbjct: 28  ------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLF 75

Query: 124 FRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGK 182
           +R+Y D E KR+G    E+FEKP R     +++  YDKLDDDG++APG+RVSGDDV+IGK
Sbjct: 76  YRAYVDTE-KRVGMTVLEKFEKPLRSETLKLKHGTYDKLDDDGLVAPGVRVSGDDVIIGK 134

Query: 183 TITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIP 242
           T  +  +  EL   TK   K+D ST LR++E GIVD+V+L+ N  G KF K+R+R+ +IP
Sbjct: 135 TTPIAPDAXELGQRTKNHIKKDASTPLRSTENGIVDKVLLSTNSXGLKFVKVRMRTTKIP 194

Query: 243 QIGDKFASRHGQKGTCGIQYRQE------------------------------------V 266
           QIGDKFASRHGQKGT GI YRQE                                    V
Sbjct: 195 QIGDKFASRHGQKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKV 254

Query: 267 SSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQ 326
           SS +G  GDATPF + + V  +S LL+E+GYQ RG EVM+NGHTGRK+  QVFLGPTYYQ
Sbjct: 255 SSLRGYEGDATPFTE-ITVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVVQVFLGPTYYQ 313

Query: 327 RLKH 330
           RL+H
Sbjct: 314 RLRH 317


>gi|52699880|gb|AAU87001.1| DNA-dependent RNA polymerase II second largest subunit [Sporastatia
           polyspora]
          Length = 713

 Score =  330 bits (845), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 170/299 (56%), Positives = 209/299 (69%), Gaps = 39/299 (13%)

Query: 75  RSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFRSYKDAESKR 134
           RSME+L+FRELPAG N+IVAI CY+GYNQEDSVI+  S+++RG FRS+F+RSY D E KR
Sbjct: 415 RSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMXXSSIDRGLFRSLFYRSYTDQE-KR 473

Query: 135 IG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENEDEL 193
           +G    EQFEKP R     +++  YDKLDDDGI+APG+RVSG+D+VIGKT  +  + +EL
Sbjct: 474 VGMSIVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIVIGKTAPIAPDAEEL 533

Query: 194 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 253
              TK   KRD ST LR++E GIVDQV+LT N +G +F K+R+R+ ++PQIGDKFASRHG
Sbjct: 534 GQRTKLHVKRDASTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKVPQIGDKFASRHG 593

Query: 254 QKGTCGIQYRQE------------------------------------VSSNKGEIGDAT 277
           QKGT GI YRQE                                    VSS +G  GDAT
Sbjct: 594 QKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDAT 653

Query: 278 PFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQRLKHMVDDKI 336
           PF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPTYYQRL+HMVD KI
Sbjct: 654 PFTE-VTVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMVDXKI 711


>gi|300394674|gb|ADK11875.1| DNA-directed RNA polymerase II subunit two, partial [Amylocorticium
           cebennense]
          Length = 689

 Score =  329 bits (844), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 172/360 (47%), Positives = 221/360 (61%), Gaps = 82/360 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF VRMDT+A++LYYP KPL TTR                              
Sbjct: 376 MGIYLTNFLVRMDTMANILYYPQKPLATTR------------------------------ 405

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SM YL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 406 ---------------SMMYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 450

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q EQFEKP R     M++  YDK++DDG+IAPG  V+G+D++I
Sbjct: 451 SIYYRSYMDLEKKSGIQQLEQFEKPTRDNTLRMKHGTYDKIEDDGLIAPGTGVAGEDIII 510

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++ETGIVDQV++T N +G KF K+RVR+ R
Sbjct: 511 GKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTETGIVDQVLITTNSEGQKFVKVRVRATR 570

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 571 IPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLS 630

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D + V+ +S  L + GYQ RG EVM++GHTGRK+ AQ++LGPTY
Sbjct: 631 KVATLIGNEGDATPFTD-LTVESVSKFLLQKGYQSRGMEVMYHGHTGRKLQAQIYLGPTY 689


>gi|52699839|gb|AAU86981.1| DNA-dependent RNA polymerase II second largest subunit [Ochrolechia
           juvenalis]
          Length = 712

 Score =  329 bits (844), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 180/370 (48%), Positives = 223/370 (60%), Gaps = 84/370 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG        RMDT++++LYYP KPL TTR                              
Sbjct: 389 MGXXXXXXXXRMDTMSNILYYPQKPLATTR------------------------------ 418

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 419 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 463

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+R+Y D E KRIG    EQFEKP R     +++  YDKL DDGI+APG+RVSG+D++
Sbjct: 464 SLFYRAYTDQE-KRIGMSVVEQFEKPMRSDTLKLKHGTYDKLXDDGIVAPGVRVSGEDII 522

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK   KRD ST LR +E GIVD+V+LT N +G +F K+R+R+ 
Sbjct: 523 IGKTAPIAPDAEELGQRTKLHIKRDASTPLRTTEXGIVDKVLLTTNAEGLRFVKVRMRTT 582

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 583 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGVVPDLIIXPHAIPSRMTIAHXIECQL 642

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+  QVFLGPT
Sbjct: 643 SKVSSLRGFEGDATPFTE-VTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVVQVFLGPT 701

Query: 324 YYQRLKHMVD 333
           YYQRL+ MVD
Sbjct: 702 YYQRLRXMVD 711


>gi|103001753|gb|ABF71520.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
           chlorophanum]
          Length = 699

 Score =  329 bits (844), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 171/297 (57%), Positives = 208/297 (70%), Gaps = 39/297 (13%)

Query: 75  RSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFRSYKDAESKR 134
           RSME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FRS+F+RSY D E KR
Sbjct: 405 RSMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQE-KR 463

Query: 135 IG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENEDEL 193
           IG    EQFEKP R     +++  YDKLDDDGI+APG+RVSG+D++IGKT  +  + +EL
Sbjct: 464 IGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTAPIAPDAEEL 523

Query: 194 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 253
              TK   KRD ST LR++E GIVDQV+LT N +G KF K+R+R+ +IPQIGDKFASRHG
Sbjct: 524 GQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHG 583

Query: 254 QKGTCGIQYRQE------------------------------------VSSNKGEIGDAT 277
           QKGT GI YRQE                                    VSS +G  GDAT
Sbjct: 584 QKGTIGITYRQEDMPFTMEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFEGDAT 643

Query: 278 PFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQRLKHMVDD 334
           PF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPTYYQRL+HM DD
Sbjct: 644 PFTE-VTVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLRHMXDD 699


>gi|52699876|gb|AAU86999.1| DNA-dependent RNA polymerase II second largest subunit [Sordaria
           macrospora]
          Length = 707

 Score =  329 bits (844), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 178/363 (49%), Positives = 222/363 (61%), Gaps = 84/363 (23%)

Query: 5   ITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVIL 64
           +TN+  RMDT+A++LYYP KPL TTR                                  
Sbjct: 392 LTNYSRRMDTMANILYYPQKPLATTR---------------------------------- 417

Query: 65  NASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFF 124
                      SMEYL+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FRS+FF
Sbjct: 418 -----------SMEYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGIFRSLFF 466

Query: 125 RSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKT 183
           RSY D E KR+G +  EQFEKP+R      ++  YDKL++DGIIAPG+RV+GDD++IGKT
Sbjct: 467 RSYTDCE-KRVGINIVEQFEKPDRSNTLRPKHGTYDKLENDGIIAPGIRVTGDDIIIGKT 525

Query: 184 ITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQ 243
             +  +  EL   T +  KRD ST LR++E+GIVD V  T N DG ++ K+RVR+ +IPQ
Sbjct: 526 SPINPDNQELGQRTAQHVKRDASTPLRSTESGIVDSVAFTTNQDGLRYVKVRVRTTKIPQ 585

Query: 244 IGDKFASRHGQKGTCGIQYRQE------------------------------------VS 267
           IGDKFASRHGQKGT G+ YRQE                                    V 
Sbjct: 586 IGDKFASRHGQKGTIGVTYRQEDMPFTAEGITPDIIINPHAIPSRMTIAHLIECLLSKVG 645

Query: 268 SNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQR 327
           S KG  GDATPF D V V  +S LL+E+GYQ RG E+M++GHTGRK+ AQVF GPTYYQR
Sbjct: 646 SLKGMEGDATPFTD-VTVDSVSNLLREHGYQSRGFEIMYHGHTGRKLRAQVFFGPTYYQR 704

Query: 328 LKH 330
           L+H
Sbjct: 705 LRH 707


>gi|394998865|gb|AFN44351.1| RNA polymerase II second largest subunit, partial [Seirophora
           lacunosa]
          Length = 584

 Score =  329 bits (844), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 177/362 (48%), Positives = 225/362 (62%), Gaps = 84/362 (23%)

Query: 5   ITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVIL 64
           +TN+  RMDT+A++LYYP KPL TTR                                  
Sbjct: 270 LTNYDERMDTMANILYYPQKPLATTR---------------------------------- 295

Query: 65  NASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFF 124
                      SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FRS+F+
Sbjct: 296 -----------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFY 344

Query: 125 RSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKT 183
           R+Y D E KR+G    E+FEKP R     +++  YDKLDDDG++APG+RVSGDDV+IGKT
Sbjct: 345 RAYVDTE-KRVGMTVLEKFEKPLRSETLKLKHGTYDKLDDDGLVAPGVRVSGDDVIIGKT 403

Query: 184 ITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQ 243
             +  + +EL   TK   K+D ST LR++E GIVD+V+L+ N +G KF K+R+R+ +IPQ
Sbjct: 404 TPIAPDAEELGQRTKNHIKKDASTPLRSTENGIVDKVLLSTNSEGLKFVKVRMRTTKIPQ 463

Query: 244 IGDKFASRHGQKGTCGIQYRQE------------------------------------VS 267
           IGDKFASRHGQKGT GI YRQE                                    VS
Sbjct: 464 IGDKFASRHGQKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVS 523

Query: 268 SNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQR 327
           S +G  GDATPF + + V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPTYYQR
Sbjct: 524 SLRGYEGDATPFTE-ITVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQR 582

Query: 328 LK 329
           L+
Sbjct: 583 LR 584


>gi|194320165|gb|ACF48308.1| DNA-dependent RNA polymerase II second largest subunit [Lecanora
           contractula]
          Length = 317

 Score =  329 bits (844), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 178/364 (48%), Positives = 224/364 (61%), Gaps = 84/364 (23%)

Query: 3   VYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSV 62
           V++TNF  RMDT+A++LYYP KPL TTR                                
Sbjct: 1   VFLTNFDQRMDTMANILYYPQKPLATTR-------------------------------- 28

Query: 63  ILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSV 122
                        SME+L+FRELPAG N+IVAI CYTGYNQEDSVI+N S+++RG FR +
Sbjct: 29  -------------SMEFLKFRELPAGQNAIVAIACYTGYNQEDSVIMNQSSIDRGLFRGL 75

Query: 123 FFRSYKDAESKRIGDQ-EEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIG 181
           F+R+Y D E K+IG    EQFEKP R     +++  YDKLDDDG++APG+RVSG+D++IG
Sbjct: 76  FYRAYSDQE-KQIGHSILEQFEKPMRSETLKLKHGTYDKLDDDGLVAPGVRVSGEDIIIG 134

Query: 182 KTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRI 241
           KT  +  + +EL   TK  +KRD ST LR++E GIVDQV+++ N DG +F K+R+R+ +I
Sbjct: 135 KTAPITADAEELGQRTKAHTKRDISTPLRSTENGIVDQVLMSTNADGLRFAKVRMRTTKI 194

Query: 242 PQIGDKFASRHGQKGTCGIQYRQE------------------------------------ 265
           PQIGDKFASRHGQKGT GI YRQE                                    
Sbjct: 195 PQIGDKFASRHGQKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSK 254

Query: 266 VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYY 325
           VSS +G  GDATPF + V V  +S LL+E GY  RG EVM+NGHTGRK+ AQVFL PTYY
Sbjct: 255 VSSLRGFEGDATPFTE-VTVDSVSRLLRENGYHSRGFEVMYNGHTGRKLVAQVFLXPTYY 313

Query: 326 QRLK 329
           QRL+
Sbjct: 314 QRLR 317


>gi|120561259|gb|ABM27014.1| RNA polymerase II second largest subunit, partial [Allomyces
           macrogynus]
          Length = 867

 Score =  329 bits (844), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 172/363 (47%), Positives = 221/363 (60%), Gaps = 83/363 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF +RMDTLA++LYYP KPLV TR                              
Sbjct: 552 MGLYLTNFQLRMDTLANILYYPQKPLVATR------------------------------ 581

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SM+YLRFRELPAG N++VAI  Y+GYNQEDS+I+N S+++RG FR
Sbjct: 582 ---------------SMKYLRFRELPAGQNAVVAIAVYSGYNQEDSIIMNQSSIDRGLFR 626

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++R+Y D E K      E FEKP R+T   +R+  YDK+++DG++APG RV+GDD++I
Sbjct: 627 SIYYRAYMDQEKKSGFSDVETFEKPTRETTLKLRHGSYDKIEEDGLVAPGTRVTGDDIII 686

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  LP +  E+   T + +K+D ST L+++E GIVD VMLT N DGYKF K+RVRS R
Sbjct: 687 GKTAPLPPDTSEMGARTTQ-TKKDVSTSLKSTEQGIVDHVMLTTNNDGYKFVKVRVRSTR 745

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           +PQ+GDKFASRHGQKGT G+ YRQE                                   
Sbjct: 746 VPQMGDKFASRHGQKGTVGMTYRQEDMPFSADGVTPDLIVNPHAIPSRMTIGHLVECLLS 805

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V S  G  GDATPF D + VQ+I+  L+  GYQ RG E+M+NGHTG+K+ AQVF GPTY
Sbjct: 806 KVGSLTGTEGDATPFTD-ITVQEIADRLRSCGYQQRGFEIMYNGHTGKKLAAQVFFGPTY 864

Query: 325 YQR 327
           YQR
Sbjct: 865 YQR 867


>gi|194320194|gb|ACF48327.1| DNA-dependent RNA polymerase II second largest subunit [Bryoria
           trichodes]
          Length = 317

 Score =  329 bits (843), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 178/364 (48%), Positives = 224/364 (61%), Gaps = 84/364 (23%)

Query: 3   VYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSV 62
           V++TN+  RMDT+A++LYYP KPL TTR                                
Sbjct: 1   VFLTNYEQRMDTMANILYYPQKPLATTR-------------------------------- 28

Query: 63  ILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSV 122
                        SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FRS+
Sbjct: 29  -------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSL 75

Query: 123 FFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIG 181
           F+R+Y D E KRIG    EQFEKP R     +++  YDKLDDDG++APG+RVSG+D++IG
Sbjct: 76  FYRAYTDQE-KRIGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGLVAPGVRVSGEDIIIG 134

Query: 182 KTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRI 241
           KT  +  + +EL   TK   KRD ST LR++E GIVDQV+L+ N DG +F K+R+R+ +I
Sbjct: 135 KTAPIAPDAEELGQRTKLHVKRDTSTPLRSTENGIVDQVLLSTNADGLRFVKVRMRTTKI 194

Query: 242 PQIGDKFASRHGQKGTCGIQYRQE------------------------------------ 265
           PQIGDKFASRHGQKGT GI YRQE                                    
Sbjct: 195 PQIGDKFASRHGQKGTIGITYRQEDMPFTSEGMVPDLIINPHAIPSRMTIAHLIECLLSK 254

Query: 266 VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYY 325
           VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+  QVF G TYY
Sbjct: 255 VSSLRGFEGDATPFTE-VTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVTQVFFGXTYY 313

Query: 326 QRLK 329
           QRL+
Sbjct: 314 QRLR 317


>gi|394998867|gb|AFN44352.1| RNA polymerase II second largest subunit, partial [Teloschistes
           chrysophthalmus]
          Length = 585

 Score =  329 bits (843), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 174/364 (47%), Positives = 225/364 (61%), Gaps = 84/364 (23%)

Query: 4   YITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVI 63
           ++TN+  RMDT+A++LYYP KPL TTR                                 
Sbjct: 269 FLTNYDERMDTMANILYYPQKPLATTR--------------------------------- 295

Query: 64  LNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVF 123
                       SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FRS+F
Sbjct: 296 ------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLF 343

Query: 124 FRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGK 182
           +R+Y D E KR+G    E+FEKP R     +++  YDKLDDDG++APG+RVSGDDV+IGK
Sbjct: 344 YRAYVDTE-KRVGMTVLEKFEKPLRSETLKLKHGTYDKLDDDGLVAPGVRVSGDDVIIGK 402

Query: 183 TITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIP 242
           T  +  + +E+    K   K+D ST LR++E GIVD+V+L+ N +G KF K+R+R+ ++P
Sbjct: 403 TTPIAPDAEEMGQRAKSHIKKDASTPLRSTENGIVDKVLLSTNSEGLKFVKVRMRTTKVP 462

Query: 243 QIGDKFASRHGQKGTCGIQYRQE------------------------------------V 266
           QIGDKFASRHGQKGT GI YRQE                                    V
Sbjct: 463 QIGDKFASRHGQKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKV 522

Query: 267 SSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQ 326
           SS +G  GDATPF + + V  +S LL+E+GYQ RG EVM+NGHTGRK+  QVFLGPTYYQ
Sbjct: 523 SSLRGYEGDATPFTE-ITVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVVQVFLGPTYYQ 581

Query: 327 RLKH 330
           RL+H
Sbjct: 582 RLRH 585


>gi|300394688|gb|ADK11882.1| DNA-directed RNA polymerase II subunit two, partial [Coniophora
           puteana]
          Length = 686

 Score =  328 bits (842), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 173/358 (48%), Positives = 221/358 (61%), Gaps = 82/358 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF VRMDT+A++LYYP KPL TTR                              
Sbjct: 374 MGIYLTNFLVRMDTMANILYYPQKPLATTR------------------------------ 403

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 404 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 448

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP R T   M++  YDK++DDG+IAPG  VSG+D++I
Sbjct: 449 SIYYRSYMDLEKKSGIQQLEEFEKPTRDTTLRMKHGTYDKIEDDGLIAPGTGVSGEDIII 508

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E GIVDQV++T N +G KF K+RVRS R
Sbjct: 509 GKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTR 568

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 569 IPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLS 628

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGP 322
            V++  G  GDATPF D + V+ +ST L++ GYQ RG EVM++GHTGRK+ AQV+L P
Sbjct: 629 KVATLIGNEGDATPFTD-LTVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQAQVYLVP 685


>gi|317408993|gb|ADV17878.1| RNA polymerase II second largest subunit [Gloeophyllum striatum]
          Length = 349

 Score =  328 bits (842), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 172/355 (48%), Positives = 221/355 (62%), Gaps = 82/355 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF VRMDT+A++LYYP KPL TTR                              
Sbjct: 41  MGIYLTNFLVRMDTMANILYYPQKPLATTR------------------------------ 70

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYLRFRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 71  ---------------SMEYLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 115

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP R+T   M++  YDK++DDG+IAPG  V+GDD++I
Sbjct: 116 SIYYRSYMDLEKKSGVQQLEEFEKPTRETTLRMKHGTYDKIEDDGLIAPGTGVNGDDIII 175

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E+GIVDQV++T N +G KF K+RVRS R
Sbjct: 176 GKTAPIPPDSEELGQRTRSHTRRDVSTALKSTESGIVDQVLITTNSEGQKFVKVRVRSTR 235

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 236 IPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLS 295

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVF 319
            V++  G  GDATPF D + V+ +ST L++ GYQ RG EVM++GHTGRK+ AQV+
Sbjct: 296 KVATLIGNEGDATPFTD-LTVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQAQVY 349


>gi|394998899|gb|AFN44368.1| RNA polymerase II second largest subunit, partial [Physcia dubia]
          Length = 312

 Score =  328 bits (841), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 174/358 (48%), Positives = 217/358 (60%), Gaps = 82/358 (22%)

Query: 4   YITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVI 63
           ++TN+  RM+T++H+LYYP KPL TTR                                 
Sbjct: 1   FLTNYDQRMETISHILYYPQKPLATTR--------------------------------- 27

Query: 64  LNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVF 123
                       SMEYL+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FRS+F
Sbjct: 28  ------------SMEYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLF 75

Query: 124 FRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKT 183
           +RSY D E K      E FEKP R      +N  YDKLDDDG+I PG RVSG+D++IGKT
Sbjct: 76  YRSYTDQEKKIGAHVVEAFEKPMRSDTLRTKNGTYDKLDDDGLIVPGARVSGEDIIIGKT 135

Query: 184 ITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQ 243
             +  + +EL   TK  +KRD ST LR++E+G+VDQV+LT N +G KF K+R+R+ +IPQ
Sbjct: 136 APIAPDAEELGQRTKLHTKRDASTPLRSTESGLVDQVLLTTNAEGLKFVKVRMRTTKIPQ 195

Query: 244 IGDKFASRHGQKGTCGIQYRQE------------------------------------VS 267
           IGDKFASRHGQKGT GI YRQE                                    VS
Sbjct: 196 IGDKFASRHGQKGTIGITYRQEDMPFTSEGLVPDLIINPHAIPSRMTIAHLIECQLSKVS 255

Query: 268 SNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYY 325
           S +G  GDATPF + V V  +S LL+E+GYQ RG E+M+NGHTGRK+ AQVFLGPTYY
Sbjct: 256 SLRGFEGDATPFTE-VTVDSVSRLLREHGYQSRGFEIMYNGHTGRKLVAQVFLGPTYY 312


>gi|300394716|gb|ADK11896.1| DNA-directed RNA polymerase II subunit two, partial
           [Leptosporomyces raunkiaeri]
          Length = 669

 Score =  328 bits (841), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 170/358 (47%), Positives = 223/358 (62%), Gaps = 82/358 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF +RMDT+A++LYYP KPL TTR                              
Sbjct: 356 MGIYLTNFLIRMDTMANILYYPQKPLATTR------------------------------ 385

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 386 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 430

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP R+    M++  YDK++DDG+IAPG  VSG+D++I
Sbjct: 431 SIYYRSYMDLERKSGVQQLEEFEKPTRENTLRMKHGTYDKIEDDGLIAPGTNVSGEDIII 490

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E+GIVDQV++T N +G KF K+RVR+ R
Sbjct: 491 GKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRATR 550

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 551 IPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLS 610

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGP 322
            V++  G  GDATPF D + V+ +ST L++ GYQ RG EVM++GH+GRK+ AQV+LGP
Sbjct: 611 KVATLIGNEGDATPFTD-LTVESVSTFLRQKGYQSRGLEVMYHGHSGRKLQAQVYLGP 667


>gi|320172586|gb|ADW24176.1| RNA polymerase II second largest subunit [Gloeophyllum sepiarium]
          Length = 341

 Score =  328 bits (841), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 172/355 (48%), Positives = 220/355 (61%), Gaps = 82/355 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF VRMDT+A++LYYP KPL TTR                              
Sbjct: 33  MGIYLTNFLVRMDTMANILYYPQKPLATTR------------------------------ 62

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYLRFRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 63  ---------------SMEYLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 107

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP R+T   M++  YDK++DDG IAPG  V+GDD++I
Sbjct: 108 SIYYRSYMDLEKKSGVQQLEEFEKPTRETTLRMKHGTYDKIEDDGFIAPGTGVNGDDIII 167

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E+GIVDQV++T N +G KF K+RVRS R
Sbjct: 168 GKTAPIPPDSEELGQRTRSHTRRDVSTALKSTESGIVDQVLITTNSEGQKFVKVRVRSTR 227

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 228 IPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLS 287

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVF 319
            V++  G  GDATPF D + V+ +ST L++ GYQ RG EVM++GHTGRK+ AQV+
Sbjct: 288 KVATLIGNEGDATPFTD-LTVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQAQVY 341


>gi|341859024|gb|AEK97422.1| ribosomal polymerase II second largest subunit [Beauveria bassiana]
          Length = 703

 Score =  328 bits (841), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 173/365 (47%), Positives = 222/365 (60%), Gaps = 82/365 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG ++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 385 MGFFLTNYSRRMDTMANILYYPQKPLATTR------------------------------ 414

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 415 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 459

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY D E K   +  E FEKP  Q+   M++  YDKLD+DGI+APG+RVSG+D++I
Sbjct: 460 SLFFRSYSDQEKKVGLNYTEIFEKPFHQSTLRMKHGTYDKLDEDGIVAPGVRVSGEDIII 519

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +     +L   T    +RD ST LR++E GIVDQV++T+N D  K+ K+RVR+ +
Sbjct: 520 GKTAPIDSETQDLGARTTAHQRRDISTPLRSTENGIVDQVIVTVNADNVKYVKVRVRTTK 579

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT G+ YRQE                                   
Sbjct: 580 IPQIGDKFASRHGQKGTIGVTYRQEDMPFTREGVTPDIIINPHAIPSRMTIAHLIECLLS 639

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            VS+ +G  GDATPF D V V  +S LL+++GYQ RG E+M+NGHTG+K+ AQVF GPTY
Sbjct: 640 KVSTLEGMEGDATPFTD-VTVDSVSDLLRKHGYQSRGFEIMYNGHTGKKLRAQVFFGPTY 698

Query: 325 YQRLK 329
           YQRL+
Sbjct: 699 YQRLR 703


>gi|46277366|gb|AAS86873.1| DNA-dependent RNA polymerase II [Peziza howsei]
          Length = 562

 Score =  328 bits (841), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 178/360 (49%), Positives = 224/360 (62%), Gaps = 84/360 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG ++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 250 MGXFLTNYRERMDTMANILYYPQKPLGTTR------------------------------ 279

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 280 ---------------SMEFLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 324

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+FFR+Y D E KR+G +  E+FEKP R     +++  YDKLDDDG++APG+RVSG+D++
Sbjct: 325 SLFFRTYMDQE-KRVGMNVVEEFEKPTRGNTLRLKHGTYDKLDDDGLVAPGVRVSGEDII 383

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  N+DEL   TK  +KRD ST LR++E GIVDQVM+T N +G KF K+R+R+ 
Sbjct: 384 IGKTAPIAPNQDELGQRTKYHTKRDVSTPLRSTENGIVDQVMVTTNQEGLKFVKVRMRTT 443

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YR E                                  
Sbjct: 444 KIPQIGDKFASRHGQKGTIGITYRNEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQL 503

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF D V V  +S LL+E+GYQ RG E+M+NGHTGRK+  QVFLGPT
Sbjct: 504 SKVSSLRGFEGDATPFTD-VTVDSVSKLLREHGYQSRGFEIMYNGHTGRKLVVQVFLGPT 562


>gi|47156743|gb|AAT12268.1| RNA polymerase II second largest subunit [Diapensia lapponica]
          Length = 530

 Score =  328 bits (841), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 174/358 (48%), Positives = 220/358 (61%), Gaps = 83/358 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+  RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 220 MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA----------------------------- 250

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FRELPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 251 ----------------MEHLHFRELPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 294

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY+D E K     +E F +P+R    GMR+  YDKLDDDG+  PG RVSG+DV+I
Sbjct: 295 SLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 354

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  + ++ D   G   R++KRD ST LR+SETG+VDQV+LT N DG +F K+RVRSVR
Sbjct: 355 GKTTPIAQD-DSQGGPGGRYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVR 413

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 414 IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTMEGITPDIIVNPHAIPSRMTIGQLIECIMG 473

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGP 322
            V+++ G+ GDATPF + V V  IS  L + GYQ+RG E M+NGHTGR+++A +FLGP
Sbjct: 474 KVAAHMGKEGDATPFTE-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGP 530


>gi|341859126|gb|AEK97473.1| ribosomal polymerase II second largest subunit [Beauveria sungii]
 gi|341859128|gb|AEK97474.1| ribosomal polymerase II second largest subunit [Beauveria sungii]
 gi|341859130|gb|AEK97475.1| ribosomal polymerase II second largest subunit [Beauveria sungii]
 gi|341859132|gb|AEK97476.1| ribosomal polymerase II second largest subunit [Beauveria sungii]
 gi|341859134|gb|AEK97477.1| ribosomal polymerase II second largest subunit [Beauveria sungii]
 gi|341859136|gb|AEK97478.1| ribosomal polymerase II second largest subunit [Beauveria sungii]
 gi|341859138|gb|AEK97479.1| ribosomal polymerase II second largest subunit [Beauveria sungii]
          Length = 703

 Score =  328 bits (841), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 174/365 (47%), Positives = 222/365 (60%), Gaps = 82/365 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG ++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 385 MGFFLTNYSRRMDTMANILYYPQKPLATTR------------------------------ 414

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 415 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 459

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY D E K   +  E FEKP  Q+   M++  YDKLD+DGI+APG+RVSG+D++I
Sbjct: 460 SLFFRSYSDQEKKVGLNYTEIFEKPFHQSTLRMKHGTYDKLDEDGIVAPGVRVSGEDIII 519

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +     +L   T    +RD ST LR++E GIVDQV++T+N D  K+ K+RVR+ +
Sbjct: 520 GKTAPIDPETQDLGTRTTAHQRRDISTPLRSTENGIVDQVIVTVNADNVKYVKVRVRTTK 579

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT G+ YRQE                                   
Sbjct: 580 IPQIGDKFASRHGQKGTIGVTYRQEDMPFTREGVTPDIIINPHAIPSRMTIAHLIECLLS 639

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            VS+ +G  GDATPF D V V  +S LL+++GYQ RG E+M+NGHTGRK+ AQVF GPTY
Sbjct: 640 KVSTLEGMEGDATPFTD-VTVDSVSDLLRKHGYQSRGFEIMYNGHTGRKLRAQVFFGPTY 698

Query: 325 YQRLK 329
           YQRL+
Sbjct: 699 YQRLR 703


>gi|394998827|gb|AFN44332.1| RNA polymerase II second largest subunit, partial [Caloplaca
           gloriae]
          Length = 585

 Score =  328 bits (840), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 175/361 (48%), Positives = 224/361 (62%), Gaps = 84/361 (23%)

Query: 7   NFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNA 66
           N+  RMDT+A++LYYP KPL TTR                                    
Sbjct: 272 NYDERMDTMANILYYPQKPLATTR------------------------------------ 295

Query: 67  SAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFRS 126
                    SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FRS+F+R+
Sbjct: 296 ---------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRA 346

Query: 127 YKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTIT 185
           Y D E KR+G    E+FEKP R     +++  YDKLDDDG++APG+RVSGDDV+IGKT  
Sbjct: 347 YVDTE-KRVGMTVLEKFEKPLRNETLKLKHGTYDKLDDDGLVAPGVRVSGDDVIIGKTTP 405

Query: 186 LPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIG 245
           +  + +E+   TK   K+D ST LR++E GIVD+V+L+ N +G KF K+R+R+ ++PQIG
Sbjct: 406 IAPDAEEMGQRTKSHIKKDASTPLRSTENGIVDKVLLSTNSEGLKFVKVRMRTTKVPQIG 465

Query: 246 DKFASRHGQKGTCGIQYRQE------------------------------------VSSN 269
           DKFASRHGQKGT GI YRQE                                    VSS 
Sbjct: 466 DKFASRHGQKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSL 525

Query: 270 KGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQRLK 329
           +G  GDATPF + + V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPTYYQRL+
Sbjct: 526 RGYEGDATPFTE-ITVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLR 584

Query: 330 H 330
           H
Sbjct: 585 H 585


>gi|194320248|gb|ACF48361.1| DNA-dependent RNA polymerase II second largest subunit [Phlyctis
           argena]
          Length = 317

 Score =  328 bits (840), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 179/364 (49%), Positives = 225/364 (61%), Gaps = 84/364 (23%)

Query: 3   VYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSV 62
           V++TNF  R+D  A++LYYP KPL TTR                                
Sbjct: 1   VFLTNFDERLDNSANILYYPQKPLATTR-------------------------------- 28

Query: 63  ILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSV 122
                        SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FRS+
Sbjct: 29  -------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSL 75

Query: 123 FFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIG 181
           F+RSY + E KRIG    E FEKP R     +++  Y+KLDDDGII+PG+RVSG+D++IG
Sbjct: 76  FYRSYVEQE-KRIGMSLVETFEKPLRSETLRLKHGTYEKLDDDGIISPGIRVSGEDIIIG 134

Query: 182 KTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRI 241
           KT  +  + +EL   TK  +KRD ST LR++E GIVD+V+LT N +G KF K+R+R+ +I
Sbjct: 135 KTAPIAPDAEELGQRTKLHTKRDASTPLRSTENGIVDKVLLTTNAEGLKFVKVRMRTTKI 194

Query: 242 PQIGDKFASRHGQKGTCGIQYRQE------------------------------------ 265
           PQIGDKFASRHGQKGT GI YRQE                                    
Sbjct: 195 PQIGDKFASRHGQKGTIGITYRQEDMPFSAEGITPDLIINPHAIPSRMTIAHLIECQLSK 254

Query: 266 VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYY 325
           VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPTYY
Sbjct: 255 VSSLRGFEGDATPFTE-VTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYY 313

Query: 326 QRLK 329
           QRL+
Sbjct: 314 QRLR 317


>gi|52699849|gb|AAU86986.1| DNA-dependent RNA polymerase II second largest subunit [Gyalecta
           hypoleuca]
          Length = 705

 Score =  328 bits (840), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 176/365 (48%), Positives = 225/365 (61%), Gaps = 84/365 (23%)

Query: 8   FHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNAS 67
           F  RMDT++++L+YP KPL TTR                                     
Sbjct: 387 FDERMDTMSNILFYPQKPLGTTR------------------------------------- 409

Query: 68  AVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFRSY 127
                   +MEYL+FR LPAG N+IVAI CY+GYNQEDSVI+N S+++RG FRS+F+R Y
Sbjct: 410 --------AMEYLKFRHLPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRVY 461

Query: 128 KDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITL 186
            + E KR+G    EQFEKP R     +++  Y+KLDDDGIIAPG+RVSG+D++IGKT  +
Sbjct: 462 TEQE-KRVGISLVEQFEKPLRSETLRVKHGTYEKLDDDGIIAPGVRVSGEDIIIGKTAPI 520

Query: 187 PENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGD 246
             + +E+   TK  +KRD ST LR++E GIVD+VM+T N +G KF K+R+R+ +IPQIGD
Sbjct: 521 APDSEEMGQRTKFHTKRDASTPLRSTENGIVDKVMVTTNAEGLKFVKVRMRTTKIPQIGD 580

Query: 247 KFASRHGQKGTCGIQYRQE------------------------------------VSSNK 270
           KFASRHGQKGT GI YRQE                                    V+S  
Sbjct: 581 KFASRHGQKGTIGITYRQEDMPFTAEGITPDLIINPHAIPSRMTIAHLIECLISKVASLS 640

Query: 271 GEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQRLKH 330
           G  GDATPF D + V  +S  L+++GYQ RG EVM+NGHTGRK+ AQ+FLGPTYYQRL+H
Sbjct: 641 GCEGDATPFTD-ITVDSVSDALRKHGYQSRGFEVMYNGHTGRKLVAQIFLGPTYYQRLRH 699

Query: 331 MVDDK 335
           MVDDK
Sbjct: 700 MVDDK 704


>gi|300394728|gb|ADK11902.1| DNA-directed RNA polymerase II subunit two, partial [Piloderma
           fallax]
          Length = 686

 Score =  327 bits (839), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 170/358 (47%), Positives = 222/358 (62%), Gaps = 82/358 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF +RMDT+A++LYYP KPL TTR                              
Sbjct: 375 MGIYLTNFLIRMDTMANILYYPQKPLATTR------------------------------ 404

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 405 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 449

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP R+    M++  YDK++DDG+IAPG  VSG+D++I
Sbjct: 450 SIYYRSYMDLEKKSGVQQLEEFEKPTRENTLRMKHGTYDKIEDDGLIAPGTGVSGEDIII 509

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E GIVDQV++T N +G KF K+RVR+ R
Sbjct: 510 GKTAPIPPDSEELGQRTRTHNRRDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRATR 569

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 570 IPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLS 629

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGP 322
            V++  G  GDATPF D + V+ +ST L++ GYQ RG EVM++GH+GRK+ AQV+LGP
Sbjct: 630 KVATLIGNEGDATPFTD-LTVESVSTFLRQKGYQSRGLEVMYHGHSGRKLQAQVYLGP 686


>gi|341859028|gb|AEK97424.1| ribosomal polymerase II second largest subunit [Beauveria bassiana]
 gi|341859030|gb|AEK97425.1| ribosomal polymerase II second largest subunit [Beauveria bassiana]
 gi|341859032|gb|AEK97426.1| ribosomal polymerase II second largest subunit [Beauveria bassiana]
 gi|341859034|gb|AEK97427.1| ribosomal polymerase II second largest subunit [Beauveria bassiana]
 gi|341859036|gb|AEK97428.1| ribosomal polymerase II second largest subunit [Beauveria bassiana]
 gi|341859038|gb|AEK97429.1| ribosomal polymerase II second largest subunit [Beauveria bassiana]
          Length = 703

 Score =  327 bits (839), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 173/365 (47%), Positives = 222/365 (60%), Gaps = 82/365 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG ++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 385 MGFFLTNYSRRMDTMANILYYPQKPLATTR------------------------------ 414

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 415 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 459

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY D E K   +  E FEKP  Q+   M++  YDKLD+DGI+APG+RVSG+D++I
Sbjct: 460 SLFFRSYSDQEKKVGLNYTEIFEKPFHQSTLRMKHGTYDKLDEDGIVAPGVRVSGEDIII 519

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +     +L   T    +RD ST LR++E GIVDQV++T+N D  K+ K+RVR+ +
Sbjct: 520 GKTAPIDPETQDLGARTTAHQRRDISTPLRSTENGIVDQVIVTVNADNVKYVKVRVRTTK 579

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT G+ YRQE                                   
Sbjct: 580 IPQIGDKFASRHGQKGTIGVTYRQEDMPFTREGVTPDIIINPHAIPSRMTIAHLIECLLS 639

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            VS+ +G  GDATPF D V V  +S LL+++GYQ RG E+M+NGHTG+K+ AQVF GPTY
Sbjct: 640 KVSTLEGMEGDATPFTD-VTVDSVSDLLRKHGYQSRGFEIMYNGHTGKKLRAQVFFGPTY 698

Query: 325 YQRLK 329
           YQRL+
Sbjct: 699 YQRLR 703


>gi|341859026|gb|AEK97423.1| ribosomal polymerase II second largest subunit [Beauveria bassiana]
          Length = 703

 Score =  327 bits (839), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 173/365 (47%), Positives = 222/365 (60%), Gaps = 82/365 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG ++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 385 MGFFLTNYSRRMDTMANILYYPQKPLATTR------------------------------ 414

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 415 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 459

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY D E K   +  E FEKP  Q+   M++  YDKLD+DGI+APG+RVSG+D++I
Sbjct: 460 SLFFRSYSDQEKKVGLNYTEIFEKPFHQSTLRMKHGTYDKLDEDGIVAPGVRVSGEDIII 519

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +     +L   T    +RD ST LR++E GIVDQV++T+N D  K+ K+RVR+ +
Sbjct: 520 GKTAPIDPETQDLGARTTAHQRRDISTPLRSTENGIVDQVIVTVNADNVKYVKVRVRTTK 579

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT G+ YRQE                                   
Sbjct: 580 IPQIGDKFASRHGQKGTIGVTYRQEDMPFTREGVTPDIIINPHAIPSRMTIAHLIECLLS 639

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            VS+ +G  GDATPF D V V  +S LL+++GYQ RG E+M+NGHTG+K+ AQVF GPTY
Sbjct: 640 KVSTLEGMEGDATPFTD-VTVDSVSDLLRKHGYQSRGFEIMYNGHTGKKLRAQVFFGPTY 698

Query: 325 YQRLK 329
           YQRL+
Sbjct: 699 YQRLR 703


>gi|320172584|gb|ADW24175.1| RNA polymerase II second largest subunit [Gloeophyllum protractum]
          Length = 350

 Score =  327 bits (839), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 172/356 (48%), Positives = 221/356 (62%), Gaps = 82/356 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF VRMDT+A++LYYP KPL TTR                              
Sbjct: 41  MGIYLTNFLVRMDTMANILYYPQKPLATTR------------------------------ 70

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYLRFRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 71  ---------------SMEYLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 115

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP R T   M++  YDKL+DDG+IAPG  V+G+D++I
Sbjct: 116 SIYYRSYMDLEKKSGVQQLEEFEKPTRDTTLRMKHGTYDKLEDDGLIAPGTGVNGEDIII 175

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E+GIVDQV++T N +G KF K+RVRS R
Sbjct: 176 GKTAPIPPDSEELGQRTRLHTRRDVSTALKSTESGIVDQVLITTNSEGQKFVKVRVRSTR 235

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 236 IPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDIIINPHAIPSRMTIGHLVECLLS 295

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFL 320
            V++  G  GDATPF D + V+ +ST L++ GYQ RG EVM++GHTGRK+ AQ++L
Sbjct: 296 KVATLIGNEGDATPFTD-LTVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQAQIYL 350


>gi|300394704|gb|ADK11890.1| DNA-directed RNA polymerase II subunit two, partial [Coniophora
           prasinoides]
          Length = 352

 Score =  327 bits (839), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 172/358 (48%), Positives = 221/358 (61%), Gaps = 82/358 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF VRMDT+A++LYYP KPL TTR                              
Sbjct: 41  MGIYLTNFLVRMDTMANILYYPQKPLATTR------------------------------ 70

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 71  ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 115

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP R T   M++  YDK++DDG+IAPG  VSG+D++I
Sbjct: 116 SIYYRSYMDLEKKSGIQQLEEFEKPTRDTTLRMKHGTYDKIEDDGLIAPGTGVSGEDIII 175

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E GIVDQV++T N +G KF K+RVRS R
Sbjct: 176 GKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTR 235

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 236 IPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLS 295

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGP 322
            V++  G  GDATPF D + V+ +ST L++ GYQ RG EVM++GHTGRK+ AQ++L P
Sbjct: 296 KVATLIGNEGDATPFTD-LTVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQAQIYLVP 352


>gi|300394680|gb|ADK11878.1| DNA-directed RNA polymerase II subunit two, partial [Amylocorticium
           subsulphureum]
          Length = 344

 Score =  327 bits (839), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 174/360 (48%), Positives = 219/360 (60%), Gaps = 82/360 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF VRMDT+A++LYYP KPL TTR                              
Sbjct: 31  MGIYLTNFLVRMDTMANILYYPQKPLATTR------------------------------ 60

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SM YLRFRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 61  ---------------SMLYLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 105

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q EQFEKP R     M++  Y+KL+DDG+IAPG  V+G+D++I
Sbjct: 106 SIYYRSYMDLEKKSGIQQLEQFEKPTRDNTLRMKHGTYEKLEDDGLIAPGTGVAGEDIII 165

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  S+RD ST L+++E GIVDQV++T N +G KF K+RVRS R
Sbjct: 166 GKTAPIPPDSEELGQRTRTHSRRDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTR 225

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           +PQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 226 VPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDLIINPHAIPSRMTIGHLVECLLS 285

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D + V+ +S  L + GYQ RG EVM +GHTGRK+ AQV+LGPTY
Sbjct: 286 KVATLIGNEGDATPFTD-LTVESVSKFLLQKGYQSRGLEVMHHGHTGRKLQAQVYLGPTY 344


>gi|341859116|gb|AEK97468.1| ribosomal polymerase II second largest subunit [Beauveria amorpha]
 gi|341859118|gb|AEK97469.1| ribosomal polymerase II second largest subunit [Beauveria amorpha]
 gi|341859120|gb|AEK97470.1| ribosomal polymerase II second largest subunit [Beauveria amorpha]
 gi|341859122|gb|AEK97471.1| ribosomal polymerase II second largest subunit [Beauveria amorpha]
 gi|341859124|gb|AEK97472.1| ribosomal polymerase II second largest subunit [Beauveria amorpha]
          Length = 703

 Score =  327 bits (838), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 173/365 (47%), Positives = 222/365 (60%), Gaps = 82/365 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG ++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 385 MGFFLTNYSRRMDTMANILYYPQKPLATTR------------------------------ 414

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 415 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 459

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY D E K   +  E FEKP  Q+   M++  YDKLD+DGI+APG+RVSG+D++I
Sbjct: 460 SLFFRSYSDQEKKVGLNYTEIFEKPFHQSTLRMKHGTYDKLDEDGIVAPGVRVSGEDIII 519

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +     +L   T    +RD ST LR++E GIVDQV++T+N D  K+ K+RVR+ +
Sbjct: 520 GKTAPIDPETQDLGTRTTAHQRRDISTPLRSTENGIVDQVIVTVNADNVKYVKVRVRTTK 579

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT G+ YRQE                                   
Sbjct: 580 IPQIGDKFASRHGQKGTIGVTYRQEDMPFTREGVTPDIIINPHAIPSRMTIAHLIECLLS 639

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            VS+ +G  GDATPF D V V  +S LL+++GYQ RG E+M+NGHTG+K+ AQVF GPTY
Sbjct: 640 KVSTLEGMEGDATPFTD-VTVDSVSDLLRKHGYQSRGFEIMYNGHTGKKLRAQVFFGPTY 698

Query: 325 YQRLK 329
           YQRL+
Sbjct: 699 YQRLR 703


>gi|394998841|gb|AFN44339.1| RNA polymerase II second largest subunit, partial [Caloplaca
           thracopontica]
          Length = 317

 Score =  327 bits (838), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 177/360 (49%), Positives = 222/360 (61%), Gaps = 84/360 (23%)

Query: 6   TNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILN 65
           TN   RMDT+A++LYYP KPL TTR                                   
Sbjct: 3   TNXXERMDTMANILYYPQKPLATTR----------------------------------- 27

Query: 66  ASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFR 125
                     SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FRS+F+R
Sbjct: 28  ----------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYR 77

Query: 126 SYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTI 184
           +Y D E KR+G    E+FEKP R     +++  YDKLDDDG++APG+RVSGDDV+IGKT 
Sbjct: 78  AYVDTE-KRVGMTVLEKFEKPLRSETLKLKHGTYDKLDDDGLVAPGVRVSGDDVIIGKTT 136

Query: 185 TLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQI 244
            +  + +EL   TK   K+D ST LR++E GIVD+V+L+ N +G KF K+R+R+ +IPQI
Sbjct: 137 PIAPDAEELGQRTKNHIKKDASTPLRSTENGIVDKVLLSTNSEGLKFVKVRMRTTKIPQI 196

Query: 245 GDKFASRHGQKGTCGIQYRQE------------------------------------VSS 268
           GDKFASRHGQKGT GI YRQE                                    VSS
Sbjct: 197 GDKFASRHGQKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSS 256

Query: 269 NKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQRL 328
            +G  GDATPF + + V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPTYYQRL
Sbjct: 257 LRGYEGDATPFTE-ITVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRL 315


>gi|194320177|gb|ACF48316.1| DNA-dependent RNA polymerase II second largest subunit [Lecidea
           laboriosa]
          Length = 317

 Score =  327 bits (838), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 179/364 (49%), Positives = 224/364 (61%), Gaps = 84/364 (23%)

Query: 3   VYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSV 62
           V++TN+  RMDT+A++LYYP KPL TTR                                
Sbjct: 1   VFLTNYDQRMDTMANILYYPQKPLATTR-------------------------------- 28

Query: 63  ILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSV 122
                        SME+L+FRELPAG N+IVAI  Y+GYNQEDSVI+N S+++RG FRS+
Sbjct: 29  -------------SMEFLKFRELPAGQNAIVAIAVYSGYNQEDSVIMNQSSIDRGLFRSL 75

Query: 123 FFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIG 181
           F+RSY D E KRIG    E+FEKP R     +++  YDKLDDDGI+APG+RVSG+D++IG
Sbjct: 76  FYRSYTDQE-KRIGMSVVEEFEKPMRSDTLKLKHGTYDKLDDDGIVAPGVRVSGEDIIIG 134

Query: 182 KTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRI 241
           KT  +  + +EL   TK   KRD ST LR++E GIVDQ +LT N +G +F K+R+R+ +I
Sbjct: 135 KTAPIAPDAEELGLRTKLHMKRDVSTPLRSTENGIVDQALLTTNAEGLRFVKVRMRTTKI 194

Query: 242 PQIGDKFASRHGQKGTCGIQYRQE------------------------------------ 265
           PQIGDKFASRHGQKGT GI YRQE                                    
Sbjct: 195 PQIGDKFASRHGQKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSK 254

Query: 266 VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYY 325
           VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NG TGRK+ AQVFLGPTYY
Sbjct: 255 VSSLRGFEGDATPFTE-VTVDSVSRLLREHGYQSRGFEVMYNGRTGRKLVAQVFLGPTYY 313

Query: 326 QRLK 329
           QRL+
Sbjct: 314 QRLR 317


>gi|300394690|gb|ADK11883.1| DNA-directed RNA polymerase II subunit two, partial [Coniophora
           puteana]
          Length = 648

 Score =  327 bits (838), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 172/356 (48%), Positives = 220/356 (61%), Gaps = 82/356 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF VRMDT+A++LYYP KPL TTR                              
Sbjct: 338 MGIYLTNFLVRMDTMANILYYPQKPLATTR------------------------------ 367

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 368 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 412

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP R T   M++  YDK++DDG+IAPG  VSG+D++I
Sbjct: 413 SIYYRSYMDLEKKSGIQQLEEFEKPTRDTTLRMKHGTYDKIEDDGLIAPGTGVSGEDIII 472

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E GIVDQV++T N +G KF K+RVRS R
Sbjct: 473 GKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTR 532

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 533 IPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLS 592

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFL 320
            V++  G  GDATPF D + V+ +ST L++ GYQ RG EVM++GHTGRK+ AQV+L
Sbjct: 593 KVATLIGNEGDATPFTD-LTVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQAQVYL 647


>gi|341859082|gb|AEK97451.1| ribosomal polymerase II second largest subunit [Beauveria asiatica]
          Length = 703

 Score =  327 bits (838), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 173/365 (47%), Positives = 222/365 (60%), Gaps = 82/365 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG ++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 385 MGFFLTNYSRRMDTMANILYYPQKPLATTR------------------------------ 414

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 415 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 459

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY D E K   +  E FEKP  Q+   M++  YDKLD+DGI+APG+RVSG+D++I
Sbjct: 460 SLFFRSYSDQEKKVGLNYTEIFEKPFHQSTLRMKHGTYDKLDEDGIVAPGVRVSGEDIII 519

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +     +L   T    +RD ST LR++E GIVDQV++T+N D  K+ K+RVR+ +
Sbjct: 520 GKTAPIDPETQDLGTRTTAHQRRDISTPLRSTENGIVDQVIVTVNADNVKYVKVRVRTTK 579

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT G+ YRQE                                   
Sbjct: 580 IPQIGDKFASRHGQKGTIGVTYRQEDMPFTREGVTPDIIINPHAIPSRMTIAHLIECLLS 639

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            VS+ +G  GDATPF D V V  +S LL+++GYQ RG E+M+NGHTG+K+ AQVF GPTY
Sbjct: 640 KVSTLEGMEGDATPFTD-VTVDSVSDLLRQHGYQSRGFEIMYNGHTGKKLRAQVFFGPTY 698

Query: 325 YQRLK 329
           YQRL+
Sbjct: 699 YQRLR 703


>gi|300394742|gb|ADK11909.1| DNA-directed RNA polymerase II subunit two, partial [Podoserpula
           pusio]
          Length = 359

 Score =  327 bits (838), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 170/363 (46%), Positives = 222/363 (61%), Gaps = 82/363 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF +RMDT+A++LYYP KPL TTR                              
Sbjct: 41  MGIYLTNFLIRMDTMANILYYPQKPLATTR------------------------------ 70

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SM YL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 71  ---------------SMLYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 115

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP R+    M++  YDK++DDG+IAPG  V+G+D++I
Sbjct: 116 SIYYRSYMDLEKKSGIQQLEEFEKPTRENTLRMKHGTYDKIEDDGLIAPGTGVAGEDIII 175

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E GIVDQV++T N +G KF K+RVRS R
Sbjct: 176 GKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTR 235

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           +PQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 236 VPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLS 295

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            V++  G  GDATPF D + V+ +S  L++ GYQ R  EVM+ GHTGR++ AQ+ LGPTY
Sbjct: 296 KVATLIGNEGDATPFTD-LTVESVSKFLRQKGYQSRALEVMYKGHTGRRLQAQLPLGPTY 354

Query: 325 YQR 327
           YQR
Sbjct: 355 YQR 357


>gi|399569170|gb|AFP47204.1| ribosomal polymerase II second largest subunit, partial [Beauveria
           lii]
          Length = 703

 Score =  327 bits (838), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 173/365 (47%), Positives = 222/365 (60%), Gaps = 82/365 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG ++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 385 MGFFLTNYSRRMDTMANILYYPQKPLATTR------------------------------ 414

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 415 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 459

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY D E K   +  E FEKP  Q+   M++  YDKLD+DGI+APG+RVSG+D++I
Sbjct: 460 SLFFRSYSDQEKKVGLNYTEIFEKPFHQSTLRMKHGTYDKLDEDGIVAPGVRVSGEDIII 519

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +     +L   T    +RD ST LR++E GIVDQV++T+N D  K+ K+RVR+ +
Sbjct: 520 GKTAPIDPETQDLGTRTAAHQRRDISTPLRSTENGIVDQVIVTVNADNVKYVKVRVRTTK 579

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT G+ YRQE                                   
Sbjct: 580 IPQIGDKFASRHGQKGTIGVTYRQEDMPFTREGVTPDIIINPHAIPSRMTIAHLIECLLS 639

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            VS+ +G  GDATPF D V V  +S LL+++GYQ RG E+M+NGHTG+K+ AQVF GPTY
Sbjct: 640 KVSTLEGMEGDATPFTD-VTVDSVSDLLRKHGYQSRGFEIMYNGHTGKKLRAQVFFGPTY 698

Query: 325 YQRLK 329
           YQRL+
Sbjct: 699 YQRLR 703


>gi|341859084|gb|AEK97452.1| ribosomal polymerase II second largest subunit [Beauveria
           australis]
 gi|341859086|gb|AEK97453.1| ribosomal polymerase II second largest subunit [Beauveria
           australis]
 gi|341859088|gb|AEK97454.1| ribosomal polymerase II second largest subunit [Beauveria
           australis]
          Length = 703

 Score =  327 bits (838), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 173/365 (47%), Positives = 222/365 (60%), Gaps = 82/365 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG ++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 385 MGFFLTNYSRRMDTMANILYYPQKPLATTR------------------------------ 414

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 415 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 459

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY D E K   +  E FEKP  Q+   M++  YDKLD+DGI+APG+RVSG+D++I
Sbjct: 460 SLFFRSYSDQEKKVGLNYTEIFEKPFHQSTLRMKHGTYDKLDEDGIVAPGVRVSGEDIII 519

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +     +L   T    +RD ST LR++E GIVDQV++T+N D  K+ K+RVR+ +
Sbjct: 520 GKTAPIDPETQDLGTRTTAHQRRDISTPLRSTENGIVDQVIVTVNADNVKYVKVRVRTTK 579

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT G+ YRQE                                   
Sbjct: 580 IPQIGDKFASRHGQKGTIGVTYRQEDMPFTREGVTPDIIINPHAIPSRMTIAHLIECLLS 639

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            VS+ +G  GDATPF D V V  +S LL+++GYQ RG E+M+NGHTG+K+ AQVF GPTY
Sbjct: 640 KVSTLEGMEGDATPFTD-VTVDSVSDLLRKHGYQSRGFEIMYNGHTGKKLRAQVFFGPTY 698

Query: 325 YQRLK 329
           YQRL+
Sbjct: 699 YQRLR 703


>gi|300394686|gb|ADK11881.1| DNA-directed RNA polymerase II subunit two, partial [Coniophora
           cerebella]
          Length = 685

 Score =  327 bits (838), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 172/356 (48%), Positives = 220/356 (61%), Gaps = 82/356 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF VRMDT+A++LYYP KPL TTR                              
Sbjct: 372 MGIYLTNFLVRMDTMANILYYPQKPLATTR------------------------------ 401

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 402 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 446

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP R T   M++  YDK++DDG+IAPG  VSG+D++I
Sbjct: 447 SIYYRSYMDLEKKSGIQQLEEFEKPTRDTTLRMKHGTYDKIEDDGLIAPGTGVSGEDIII 506

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E GIVDQV++T N +G KF K+RVRS R
Sbjct: 507 GKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTR 566

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 567 IPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLS 626

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFL 320
            V++  G  GDATPF D + V+ +ST L++ GYQ RG EVM++GHTGRK+ AQV+L
Sbjct: 627 KVATLIGNEGDATPFTD-LTVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQAQVYL 681


>gi|46277344|gb|AAS86862.1| DNA-dependent RNA polymerase II [Peziza ellipsospora]
          Length = 545

 Score =  327 bits (838), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 178/353 (50%), Positives = 221/353 (62%), Gaps = 84/353 (23%)

Query: 11  RMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVE 70
           RMDT+A++LYYP KPL TTRSME+L+FRELPAG N+IVAI+CY+GYNQEDSVI+N S+++
Sbjct: 240 RMDTMANILYYPQKPLGTTRSMEFLKFRELPAGQNAIVAIMCYSGYNQEDSVIMNQSSID 299

Query: 71  RGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFRSYKDA 130
           RG FRS+                                             FFR+Y D 
Sbjct: 300 RGLFRSL---------------------------------------------FFRTYMDQ 314

Query: 131 ESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPEN 189
           E KRIG    E+FEKP R     +++  YDKLDDDG++APG+RVSG+D++IGKT  +  N
Sbjct: 315 E-KRIGMSVVEEFEKPTRGNTLRLKHGTYDKLDDDGLVAPGVRVSGEDIIIGKTAPIAPN 373

Query: 190 EDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFA 249
           ++EL   TK  +KRD ST LR++E GIVDQVM+T N +G KF K+R+R+ +IPQIGDKFA
Sbjct: 374 QEELGQRTKFHTKRDVSTPLRSTENGIVDQVMVTTNQEGLKFVKVRMRTTKIPQIGDKFA 433

Query: 250 SRHGQKGTCGIQYRQE------------------------------------VSSNKGEI 273
           SRHGQKGT GI YR E                                    VSS +G  
Sbjct: 434 SRHGQKGTIGITYRNEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECLLSKVSSLRGFE 493

Query: 274 GDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQ 326
           GDATPF D V V  +STLL+E+GYQ RG E+M+NGHTGRK+ AQVFLGPTYYQ
Sbjct: 494 GDATPFTD-VTVDSVSTLLREHGYQSRGFEIMYNGHTGRKMVAQVFLGPTYYQ 545


>gi|341859040|gb|AEK97430.1| ribosomal polymerase II second largest subunit [Beauveria
           brongniartii]
 gi|341859042|gb|AEK97431.1| ribosomal polymerase II second largest subunit [Beauveria
           brongniartii]
 gi|341859044|gb|AEK97432.1| ribosomal polymerase II second largest subunit [Beauveria
           brongniartii]
 gi|341859060|gb|AEK97440.1| ribosomal polymerase II second largest subunit [Beauveria
           brongniartii]
 gi|341859062|gb|AEK97441.1| ribosomal polymerase II second largest subunit [Beauveria
           brongniartii]
 gi|341859072|gb|AEK97446.1| ribosomal polymerase II second largest subunit [Beauveria
           brongniartii]
 gi|341859074|gb|AEK97447.1| ribosomal polymerase II second largest subunit [Beauveria
           brongniartii]
 gi|341859076|gb|AEK97448.1| ribosomal polymerase II second largest subunit [Beauveria
           brongniartii]
 gi|341859078|gb|AEK97449.1| ribosomal polymerase II second largest subunit [Beauveria asiatica]
 gi|341859080|gb|AEK97450.1| ribosomal polymerase II second largest subunit [Beauveria asiatica]
 gi|341859090|gb|AEK97455.1| ribosomal polymerase II second largest subunit [Beauveria
           pseudobassiana]
 gi|341859092|gb|AEK97456.1| ribosomal polymerase II second largest subunit [Beauveria
           pseudobassiana]
 gi|341859094|gb|AEK97457.1| ribosomal polymerase II second largest subunit [Beauveria
           pseudobassiana]
 gi|341859096|gb|AEK97458.1| ribosomal polymerase II second largest subunit [Beauveria
           pseudobassiana]
 gi|341859098|gb|AEK97459.1| ribosomal polymerase II second largest subunit [Beauveria
           pseudobassiana]
 gi|341859100|gb|AEK97460.1| ribosomal polymerase II second largest subunit [Beauveria
           pseudobassiana]
 gi|341859102|gb|AEK97461.1| ribosomal polymerase II second largest subunit [Beauveria
           pseudobassiana]
 gi|341859104|gb|AEK97462.1| ribosomal polymerase II second largest subunit [Beauveria
           pseudobassiana]
 gi|341859106|gb|AEK97463.1| ribosomal polymerase II second largest subunit [Beauveria
           pseudobassiana]
 gi|341859108|gb|AEK97464.1| ribosomal polymerase II second largest subunit [Beauveria varroae]
 gi|341859110|gb|AEK97465.1| ribosomal polymerase II second largest subunit [Beauveria varroae]
 gi|341859112|gb|AEK97466.1| ribosomal polymerase II second largest subunit [Beauveria varroae]
          Length = 703

 Score =  327 bits (838), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 173/365 (47%), Positives = 222/365 (60%), Gaps = 82/365 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG ++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 385 MGFFLTNYSRRMDTMANILYYPQKPLATTR------------------------------ 414

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 415 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 459

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY D E K   +  E FEKP  Q+   M++  YDKLD+DGI+APG+RVSG+D++I
Sbjct: 460 SLFFRSYSDQEKKVGLNYTEIFEKPFHQSTLRMKHGTYDKLDEDGIVAPGVRVSGEDIII 519

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +     +L   T    +RD ST LR++E GIVDQV++T+N D  K+ K+RVR+ +
Sbjct: 520 GKTAPIDPETQDLGTRTTAHQRRDISTPLRSTENGIVDQVIVTVNADNVKYVKVRVRTTK 579

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT G+ YRQE                                   
Sbjct: 580 IPQIGDKFASRHGQKGTIGVTYRQEDMPFTREGVTPDIIINPHAIPSRMTIAHLIECLLS 639

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            VS+ +G  GDATPF D V V  +S LL+++GYQ RG E+M+NGHTG+K+ AQVF GPTY
Sbjct: 640 KVSTLEGMEGDATPFTD-VTVDSVSDLLRKHGYQSRGFEIMYNGHTGKKLRAQVFFGPTY 698

Query: 325 YQRLK 329
           YQRL+
Sbjct: 699 YQRLR 703


>gi|394998871|gb|AFN44354.1| RNA polymerase II second largest subunit, partial [Teloschistes
           flavicans]
          Length = 709

 Score =  327 bits (838), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 173/364 (47%), Positives = 225/364 (61%), Gaps = 84/364 (23%)

Query: 4   YITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVI 63
           ++T +  RMDT+A++LYYP KPL TTR                                 
Sbjct: 393 FLTKYDERMDTMANILYYPQKPLATTR--------------------------------- 419

Query: 64  LNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVF 123
                       SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FRS+F
Sbjct: 420 ------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLF 467

Query: 124 FRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGK 182
           +R+Y D E KR+G    E+FEKP R     +++  YDKL+DDG++APG+RVSGDDV+IGK
Sbjct: 468 YRAYVDTE-KRVGMTVLEKFEKPLRSETLKLKHGTYDKLEDDGLVAPGVRVSGDDVIIGK 526

Query: 183 TITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIP 242
           T  +  + +E+   TK   K+D ST LR++E GIVD+V+L+ N +G KF K+R+R+ ++P
Sbjct: 527 TTPIAPDAEEMGQRTKNHIKKDASTPLRSTENGIVDKVLLSTNSEGLKFVKVRMRTTKVP 586

Query: 243 QIGDKFASRHGQKGTCGIQYRQE------------------------------------V 266
           QIGDKFASRHGQKGT GI YRQE                                    V
Sbjct: 587 QIGDKFASRHGQKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKV 646

Query: 267 SSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQ 326
           SS +G  GDATPF + + V  +S LL+E+GYQ RG EVM+NGHTGRK+  QVFLGPTYYQ
Sbjct: 647 SSLRGYEGDATPFTE-ITVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVVQVFLGPTYYQ 705

Query: 327 RLKH 330
           RL+H
Sbjct: 706 RLRH 709


>gi|341859140|gb|AEK97480.1| ribosomal polymerase II second largest subunit [Beauveria
           caledonica]
 gi|341859142|gb|AEK97481.1| ribosomal polymerase II second largest subunit [Beauveria
           caledonica]
 gi|341859144|gb|AEK97482.1| ribosomal polymerase II second largest subunit [Beauveria
           caledonica]
 gi|341859146|gb|AEK97483.1| ribosomal polymerase II second largest subunit [Beauveria
           caledonica]
 gi|341859148|gb|AEK97484.1| ribosomal polymerase II second largest subunit [Beauveria
           caledonica]
 gi|341859150|gb|AEK97485.1| ribosomal polymerase II second largest subunit [Beauveria
           caledonica]
          Length = 703

 Score =  327 bits (838), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 173/365 (47%), Positives = 222/365 (60%), Gaps = 82/365 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG ++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 385 MGFFLTNYSRRMDTMANILYYPQKPLATTR------------------------------ 414

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 415 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 459

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY D E K   +  E FEKP  Q+   M++  YDKLD+DGI+APG+RVSG+D++I
Sbjct: 460 SLFFRSYSDQEKKVGLNYTEIFEKPFHQSTLRMKHGTYDKLDEDGIVAPGVRVSGEDIII 519

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +     +L   T    +RD ST LR++E GIVDQV++T+N D  K+ K+RVR+ +
Sbjct: 520 GKTAPIDPETQDLGTRTTAHQRRDISTPLRSTENGIVDQVIVTVNADNVKYVKVRVRTTK 579

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT G+ YRQE                                   
Sbjct: 580 IPQIGDKFASRHGQKGTIGVTYRQEDMPFTREGVTPDIIINPHAIPSRMTIAHLIECLLS 639

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            VS+ +G  GDATPF D V V  +S LL+++GYQ RG E+M+NGHTG+K+ AQVF GPTY
Sbjct: 640 KVSTLEGMEGDATPFTD-VTVDSVSDLLRKHGYQSRGFEIMYNGHTGKKLRAQVFFGPTY 698

Query: 325 YQRLK 329
           YQRL+
Sbjct: 699 YQRLR 703


>gi|341859154|gb|AEK97487.1| ribosomal polymerase II second largest subunit [Beauveria
           malawiensis]
 gi|341859156|gb|AEK97488.1| ribosomal polymerase II second largest subunit [Beauveria
           malawiensis]
 gi|341859158|gb|AEK97489.1| ribosomal polymerase II second largest subunit [Beauveria
           malawiensis]
          Length = 703

 Score =  327 bits (837), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 173/365 (47%), Positives = 222/365 (60%), Gaps = 82/365 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG ++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 385 MGFFLTNYSRRMDTMANILYYPQKPLATTR------------------------------ 414

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 415 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 459

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY D E K   +  E FEKP  Q+   M++  YDKLD+DGI+APG+RVSG+D++I
Sbjct: 460 SLFFRSYSDQEKKVGLNYTEIFEKPFHQSTLRMKHGTYDKLDEDGIVAPGVRVSGEDIII 519

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +     +L   T    +RD ST LR++E GIVDQV++T+N D  K+ K+RVR+ +
Sbjct: 520 GKTAPIDPETQDLGTRTTAHQRRDISTPLRSTENGIVDQVIVTVNADNVKYVKVRVRTTK 579

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT G+ YRQE                                   
Sbjct: 580 IPQIGDKFASRHGQKGTIGVTYRQEDMPFTREGVTPDIIINPHAIPSRMTIAHLIECLLS 639

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            VS+ +G  GDATPF D V V  +S LL+++GYQ RG E+M+NGHTG+K+ AQVF GPTY
Sbjct: 640 KVSTLEGMEGDATPFTD-VTVDSVSDLLRKHGYQSRGFEIMYNGHTGKKLRAQVFFGPTY 698

Query: 325 YQRLK 329
           YQRL+
Sbjct: 699 YQRLR 703


>gi|341859152|gb|AEK97486.1| ribosomal polymerase II second largest subunit [Beauveria
           vermiconia]
          Length = 703

 Score =  327 bits (837), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 173/365 (47%), Positives = 222/365 (60%), Gaps = 82/365 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG ++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 385 MGFFLTNYSRRMDTMANILYYPQKPLATTR------------------------------ 414

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 415 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 459

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY D E K   +  E FEKP  Q+   M++  YDKLD+DGI+APG+RVSG+D++I
Sbjct: 460 SLFFRSYSDQEKKVGLNYTEIFEKPFHQSTLRMKHGTYDKLDEDGIVAPGVRVSGEDIII 519

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +     +L   T    +RD ST LR++E GIVDQV++T+N D  K+ K+RVR+ +
Sbjct: 520 GKTAPIDPETQDLGTRTTAHQRRDISTPLRSTENGIVDQVIVTVNADNVKYVKVRVRTTK 579

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT G+ YRQE                                   
Sbjct: 580 IPQIGDKFASRHGQKGTIGVTYRQEDMPFTREGVTPDIIINPHAIPSRMTIAHLIECLLS 639

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            VS+ +G  GDATPF D V V  +S LL+++GYQ RG E+M+NGHTG+K+ AQVF GPTY
Sbjct: 640 KVSTLEGMEGDATPFTD-VTVDSVSDLLRKHGYQSRGFEIMYNGHTGKKLRAQVFFGPTY 698

Query: 325 YQRLK 329
           YQRL+
Sbjct: 699 YQRLR 703


>gi|341859046|gb|AEK97433.1| ribosomal polymerase II second largest subunit [Beauveria
           brongniartii]
 gi|341859048|gb|AEK97434.1| ribosomal polymerase II second largest subunit [Beauveria
           brongniartii]
 gi|341859050|gb|AEK97435.1| ribosomal polymerase II second largest subunit [Beauveria
           brongniartii]
 gi|341859052|gb|AEK97436.1| ribosomal polymerase II second largest subunit [Beauveria
           brongniartii]
 gi|341859054|gb|AEK97437.1| ribosomal polymerase II second largest subunit [Beauveria
           brongniartii]
 gi|341859056|gb|AEK97438.1| ribosomal polymerase II second largest subunit [Beauveria
           brongniartii]
 gi|341859058|gb|AEK97439.1| ribosomal polymerase II second largest subunit [Beauveria
           brongniartii]
 gi|341859064|gb|AEK97442.1| ribosomal polymerase II second largest subunit [Beauveria
           brongniartii]
 gi|341859066|gb|AEK97443.1| ribosomal polymerase II second largest subunit [Beauveria
           brongniartii]
 gi|341859068|gb|AEK97444.1| ribosomal polymerase II second largest subunit [Beauveria
           brongniartii]
 gi|341859070|gb|AEK97445.1| ribosomal polymerase II second largest subunit [Beauveria
           brongniartii]
 gi|341859114|gb|AEK97467.1| ribosomal polymerase II second largest subunit [Beauveria kipukae]
          Length = 703

 Score =  327 bits (837), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 173/365 (47%), Positives = 222/365 (60%), Gaps = 82/365 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG ++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 385 MGFFLTNYSRRMDTMANILYYPQKPLATTR------------------------------ 414

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 415 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 459

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY D E K   +  E FEKP  Q+   M++  YDKLD+DGI+APG+RVSG+D++I
Sbjct: 460 SLFFRSYSDQEKKVGLNYTEIFEKPFHQSTLRMKHGTYDKLDEDGIVAPGVRVSGEDIII 519

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +     +L   T    +RD ST LR++E GIVDQV++T+N D  K+ K+RVR+ +
Sbjct: 520 GKTAPIDPETQDLGTRTTAHQRRDISTPLRSTENGIVDQVIVTVNADNVKYVKVRVRTTK 579

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT G+ YRQE                                   
Sbjct: 580 IPQIGDKFASRHGQKGTIGVTYRQEDMPFTREGVTPDIIINPHAIPSRMTIAHLIECLLS 639

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            VS+ +G  GDATPF D V V  +S LL+++GYQ RG E+M+NGHTG+K+ AQVF GPTY
Sbjct: 640 KVSTLEGMEGDATPFTD-VTVDSVSDLLRKHGYQSRGFEIMYNGHTGKKLRAQVFFGPTY 698

Query: 325 YQRLK 329
           YQRL+
Sbjct: 699 YQRLR 703


>gi|46277374|gb|AAS86877.1| DNA-dependent RNA polymerase II [Peziza arvernensis]
          Length = 563

 Score =  327 bits (837), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 177/363 (48%), Positives = 226/363 (62%), Gaps = 84/363 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 248 MGVFLTNYRERMDTMANILYYPQKPLGTTR------------------------------ 277

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 278 ---------------SMEFLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 322

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+R+Y D E KR+G +  E+F KP R     +++  YDKLD+DG++APG+RVSG+D++
Sbjct: 323 SLFYRTYMDQE-KRVGMNVVEEFGKPTRGNTLRLKHGTYDKLDEDGLVAPGVRVSGEDII 381

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  N +EL   TK  ++RD ST LR++E GIVDQVM+T N +G KF K+R+R+ 
Sbjct: 382 IGKTAPISPNMEELGQRTKFHTRRDVSTPLRSTENGIVDQVMVTTNQEGLKFVKVRMRTT 441

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YR E                                  
Sbjct: 442 KIPQIGDKFASRHGQKGTIGITYRNEDMPFTAEGVVPDIIINPHAIPSRMTIAHLIECQL 501

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF D V V  +S LL+E+GYQ RG E+M+NGHTGRK+  QVFLGPT
Sbjct: 502 SKVSSLRGFEGDATPFTD-VTVDSVSRLLREHGYQSRGFEIMYNGHTGRKLVVQVFLGPT 560

Query: 324 YYQ 326
           YYQ
Sbjct: 561 YYQ 563


>gi|341859162|gb|AEK97491.1| ribosomal polymerase II second largest subunit [Isaria tenuipes]
          Length = 704

 Score =  327 bits (837), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 173/365 (47%), Positives = 222/365 (60%), Gaps = 82/365 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG ++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 386 MGFFLTNYSRRMDTMANILYYPQKPLATTR------------------------------ 415

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 416 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 460

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY D E K   +  E FEKP  Q+   M++  YDKLD+DGI+APG+RVSG+D++I
Sbjct: 461 SLFFRSYSDQEKKVGLNYTEIFEKPFHQSTLRMKHGTYDKLDEDGIVAPGVRVSGEDIII 520

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +     +L   T    +RD ST LR++E GIVDQV++T+N D  K+ K+RVR+ +
Sbjct: 521 GKTAPIDPETQDLGTRTTAHQRRDISTPLRSTENGIVDQVIVTVNADNVKYVKVRVRTTK 580

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT G+ YRQE                                   
Sbjct: 581 IPQIGDKFASRHGQKGTIGVTYRQEDMPFTREGVTPDIIINPHAIPSRMTIAHLIECLLS 640

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            VS+ +G  GDATPF D V V  +S LL+++GYQ RG E+M+NGHTG+K+ AQVF GPTY
Sbjct: 641 KVSTLEGMEGDATPFTD-VTVDSVSDLLRKHGYQSRGFEIMYNGHTGKKLRAQVFFGPTY 699

Query: 325 YQRLK 329
           YQRL+
Sbjct: 700 YQRLR 704


>gi|341859160|gb|AEK97490.1| ribosomal polymerase II second largest subunit [Cordyceps cicadae]
          Length = 704

 Score =  327 bits (837), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 173/365 (47%), Positives = 222/365 (60%), Gaps = 82/365 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG ++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 386 MGFFLTNYSRRMDTMANILYYPQKPLATTR------------------------------ 415

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 416 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 460

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY D E K   +  E FEKP  Q+   M++  YDKLD+DGI+APG+RVSG+D++I
Sbjct: 461 SLFFRSYSDQEKKVGLNYTEIFEKPFHQSTLRMKHGTYDKLDEDGIVAPGVRVSGEDIII 520

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +     +L   T    +RD ST LR++E GIVDQV++T+N D  K+ K+RVR+ +
Sbjct: 521 GKTAPIDPETQDLGTRTTAHQRRDISTPLRSTENGIVDQVIVTVNADNVKYVKVRVRTTK 580

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT G+ YRQE                                   
Sbjct: 581 IPQIGDKFASRHGQKGTIGVTYRQEDMPFTREGVTPDIIINPHAIPSRMTIAHLIECLLS 640

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            VS+ +G  GDATPF D V V  +S LL+++GYQ RG E+M+NGHTG+K+ AQVF GPTY
Sbjct: 641 KVSTLEGMEGDATPFTD-VTVDSVSDLLRKHGYQSRGFEIMYNGHTGKKLRAQVFFGPTY 699

Query: 325 YQRLK 329
           YQRL+
Sbjct: 700 YQRLR 704


>gi|300394756|gb|ADK11916.1| DNA-directed RNA polymerase II subunit two, partial [Serpula
           himantioides]
          Length = 682

 Score =  326 bits (836), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 173/356 (48%), Positives = 219/356 (61%), Gaps = 82/356 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF VRMDT+A++LYYP KPL TTR                              
Sbjct: 373 MGIYLTNFLVRMDTMANILYYPQKPLATTR------------------------------ 402

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 403 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 447

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP R     M++  YDKL+DDG+IAPG  VSG+D++I
Sbjct: 448 SIYYRSYMDLEKKSGVQQLEEFEKPTRDNTLRMKHGTYDKLEDDGLIAPGTGVSGEDIII 507

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E GIVDQV++T N +G KF KIRVRS R
Sbjct: 508 GKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVDQVLITTNSEGQKFVKIRVRSTR 567

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 568 IPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDIVINPHAIPSRMTIGHLVECLLS 627

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFL 320
            V++  G  GDATPF D + V+ +ST L++ GYQ RG EVM++GHTGRK+ AQV+L
Sbjct: 628 KVATLIGNEGDATPFTD-LTVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQAQVYL 682


>gi|119644030|gb|ABL85602.1| RNA polymerase II second largest subunit [Flavopunctelia
           flaventior]
          Length = 708

 Score =  326 bits (836), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 177/363 (48%), Positives = 222/363 (61%), Gaps = 84/363 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           M   +TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 393 MXXTLTNYEQRMDTMANILYYPQKPLATTR------------------------------ 422

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 423 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 467

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+R+Y D E KRIG    EQFEKP R     +++  YDKLDDDG++APG+RVSG+D++
Sbjct: 468 SLFYRAYTDQE-KRIGMSVVEQFEKPMRSDTLRLKHGTYDKLDDDGLVAPGVRVSGEDII 526

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK   KRD ST LR++E GIVDQV+L+ N +G +F K+R+R+ 
Sbjct: 527 IGKTAPIAPDAEELGQRTKLHVKRDTSTPLRSTENGIVDQVLLSTNAEGLRFVKVRMRTT 586

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 587 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGMVPDLIINPHAIPSRMTIAHLIECLL 646

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+  QVFLGPT
Sbjct: 647 SKVSSLRGFEGDATPFTE-VTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVTQVFLGPT 705

Query: 324 YYQ 326
           YYQ
Sbjct: 706 YYQ 708


>gi|341859164|gb|AEK97492.1| ribosomal polymerase II second largest subunit [Isaria farinosa]
          Length = 703

 Score =  326 bits (836), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 173/365 (47%), Positives = 222/365 (60%), Gaps = 82/365 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG ++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 385 MGFFLTNYSRRMDTMANILYYPQKPLATTR------------------------------ 414

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 415 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 459

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY D E K   +  E FEKP  Q+   M++  YDKLD+DGI+APG+RVSG+D++I
Sbjct: 460 SLFFRSYSDQEKKVGLNYTEIFEKPFHQSTLRMKHGTYDKLDEDGIVAPGVRVSGEDIII 519

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +     +L   T    +RD ST LR++E GIVDQV++T+N D  K+ K+RVR+ +
Sbjct: 520 GKTAPIDPETQDLGTRTTAHQRRDISTPLRSTENGIVDQVIVTVNADNVKYVKVRVRTTK 579

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT G+ YRQE                                   
Sbjct: 580 IPQIGDKFASRHGQKGTIGVTYRQEDMPFTREGVTPDIIINPHAIPSRMTIAHLIECLLS 639

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
            VS+ +G  GDATPF D V V  +S LL+++GYQ RG E+M+NGHTG+K+ AQVF GPTY
Sbjct: 640 KVSTLEGMEGDATPFTD-VTVDSVSDLLRKHGYQSRGFEIMYNGHTGKKLRAQVFFGPTY 698

Query: 325 YQRLK 329
           YQRL+
Sbjct: 699 YQRLR 703


>gi|46277338|gb|AAS86859.1| DNA-dependent RNA polymerase II [Plicaria anthracina]
          Length = 551

 Score =  326 bits (836), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 178/360 (49%), Positives = 223/360 (61%), Gaps = 84/360 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN+  RMDT+A++LYYP KPL TTR                              
Sbjct: 239 MGVFLTNYRERMDTMANILYYPQKPLGTTR------------------------------ 268

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI+CY+GYNQEDSVI+N  +++RG FR
Sbjct: 269 ---------------SMEFLKFRELPAGQNAIVAIMCYSGYNQEDSVIMNQHSIDRGLFR 313

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+FFR+Y D E KRIG    E+FEKP R     +++  YDKLDDDG++APG+RVSG+D++
Sbjct: 314 SLFFRTYMDQE-KRIGMSVVEEFEKPTRGNTLRLKHGTYDKLDDDGLVAPGVRVSGEDII 372

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  N++EL   TK  +KRD ST LR++E GIVDQVM+T N +G KF K+R+R+ 
Sbjct: 373 IGKTAPIAPNQEELGQRTKFHTKRDVSTPLRSTENGIVDQVMVTTNQEGLKFVKVRMRTT 432

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YR E                                  
Sbjct: 433 KIPQIGDKFASRHGQKGTIGITYRNEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECLL 492

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF D V V  +S LL+E+GYQ RG E+M+NGHTGRKI  QVFLGPT
Sbjct: 493 SKVSSLRGFEGDATPFTD-VTVDSVSKLLREHGYQSRGFEIMYNGHTGRKIVCQVFLGPT 551


>gi|120561265|gb|ABM27017.1| RNA polymerase II second largest subunit, partial [Coelomomyces
           stegomyiae]
          Length = 862

 Score =  326 bits (836), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 178/353 (50%), Positives = 218/353 (61%), Gaps = 83/353 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGVY+TNF +RMDTLA++LYYP KPLVTTR+                             
Sbjct: 557 MGVYLTNFQLRMDTLANILYYPQKPLVTTRN----------------------------- 587

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           M+YLRFRELPAG N+IVAI  Y+GYNQEDS+I++ SA++RG FR
Sbjct: 588 ----------------MQYLRFRELPAGQNAIVAIAAYSGYNQEDSLIMSQSAIDRGLFR 631

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY DAE K    Q E+FE+P R+T   +R   Y+KL+DDG +APG RV+GDD++I
Sbjct: 632 SIYYRSYVDAEKKTGFTQLEEFERPTRETTLKLRQGSYEKLEDDGFVAPGTRVNGDDIII 691

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  LP +  EL GT    +K+D ST L++SE GIVD VM+T N DGYKF KIRVRS R
Sbjct: 692 GKTAPLPMDHSEL-GTRTTQTKKDVSTGLKSSENGIVDHVMVTTNGDGYKFVKIRVRSTR 750

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           +PQIGDKFASRHGQKGT G+ YRQE                                   
Sbjct: 751 VPQIGDKFASRHGQKGTVGMTYRQEDMPFTAEGLTPDLIINPHAIPSRMTIGHLVECLLG 810

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQ 317
            VSS  G  GDATPF D V VQ+IS LL+E GYQ RG EVM+NGHTG+K++AQ
Sbjct: 811 KVSSLTGSEGDATPFTD-VTVQQISDLLRECGYQQRGFEVMYNGHTGKKLSAQ 862


>gi|46277368|gb|AAS86874.1| DNA-dependent RNA polymerase II [Peziza michelii]
          Length = 548

 Score =  326 bits (835), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 177/357 (49%), Positives = 222/357 (62%), Gaps = 84/357 (23%)

Query: 7   NFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNA 66
           N+  RMDT+A++LYYP KPL TTR                                    
Sbjct: 239 NYRERMDTMANILYYPQKPLGTTR------------------------------------ 262

Query: 67  SAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFRS 126
                    SME+L+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FRS+FFR+
Sbjct: 263 ---------SMEFLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSLFFRT 313

Query: 127 YKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTIT 185
           Y D E KRIG    E+FEKP R     +++  YDKLDDDG++APG+RVSG+D++IGKT  
Sbjct: 314 YMDQE-KRIGMSVVEEFEKPTRGNTLRLKHGTYDKLDDDGLVAPGVRVSGEDIIIGKTAP 372

Query: 186 LPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIG 245
           +  N++EL   TK  +KRD ST LR++E GIVDQVM+T N +G KF K+R+R+ ++PQIG
Sbjct: 373 IAPNQEELGQRTKFHTKRDVSTPLRSTENGIVDQVMVTTNQEGLKFVKVRMRTTKVPQIG 432

Query: 246 DKFASRHGQKGTCGIQYRQE------------------------------------VSSN 269
           DKFASRHGQKGT G+ YR E                                    VSS 
Sbjct: 433 DKFASRHGQKGTIGLTYRNEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSL 492

Query: 270 KGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQ 326
           +G  GDATPF D V V  +S LL+E+GYQ RG E+M+NGHTGRK+ AQVFLGPTYYQ
Sbjct: 493 RGYEGDATPFTD-VTVDSVSKLLREHGYQSRGFEIMYNGHTGRKLVAQVFLGPTYYQ 548


>gi|56694376|gb|AAW22928.1| RNA polymerase II second largest subunit [Acorus gramineus]
          Length = 536

 Score =  326 bits (835), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 171/354 (48%), Positives = 218/354 (61%), Gaps = 84/354 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TN+ +RMDTLA+VLYYP KPLVTTR+                             
Sbjct: 231 MGIYVTNYQLRMDTLAYVLYYPQKPLVTTRA----------------------------- 261

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 262 ----------------MEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFR 305

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY+D E K     +E F +PNR+   GMR+  YDKLDDDG+  PG RVSG+DV+I
Sbjct: 306 SLFFRSYRDEEKKMGTLVKEDFGRPNRENTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 365

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT   P  ++E +G   R++KRD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVR
Sbjct: 366 GKTT--PIAQEEAQGQASRYTKRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVR 423

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKF+SRHGQKGT G+ Y QE                                   
Sbjct: 424 IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMG 483

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQV 318
            V+++ G+ GDATPF D V V  IS  L + GYQ+RG E M+NGHTGRK+ A +
Sbjct: 484 KVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRKLTAMI 536


>gi|394998902|gb|AFN44370.1| RNA polymerase II second largest subunit, partial [Hypogymnia
           physodes]
          Length = 316

 Score =  326 bits (835), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 176/363 (48%), Positives = 224/363 (61%), Gaps = 84/363 (23%)

Query: 4   YITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVI 63
           ++TN+  RMDT+A++LYYP KPL TTR                                 
Sbjct: 1   FLTNYEQRMDTMANILYYPQKPLATTR--------------------------------- 27

Query: 64  LNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVF 123
                       SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FRS+F
Sbjct: 28  ------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLF 75

Query: 124 FRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGK 182
           +R+  D E KRIG    EQFEKP R     +++  YDKLD+DG++APG+RVSG+D++IGK
Sbjct: 76  YRANTDQE-KRIGMSVVEQFEKPMRSDTLKLKHGTYDKLDEDGLVAPGVRVSGEDIIIGK 134

Query: 183 TITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIP 242
           T  +  + +EL   TK   KRD ST LR++E GIVDQV+L+ N +G +F K+R+R+ +IP
Sbjct: 135 TAPIAPDAEELGQRTKLHVKRDTSTPLRSTENGIVDQVLLSTNAEGLRFVKVRMRTTKIP 194

Query: 243 QIGDKFASRHGQKGTCGIQYRQE------------------------------------V 266
           QIGDKFASRHGQKGT GI YRQE                                    V
Sbjct: 195 QIGDKFASRHGQKGTIGITYRQEDMPFTSEGLVPDLIINPHAIPSRMTIAHLIECLLSKV 254

Query: 267 SSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQ 326
           SS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+  QVFLGPTYYQ
Sbjct: 255 SSLRGFEGDATPFTE-VTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVTQVFLGPTYYQ 313

Query: 327 RLK 329
           RL+
Sbjct: 314 RLR 316


>gi|394998839|gb|AFN44338.1| RNA polymerase II second largest subunit, partial [Caloplaca
           thallincola]
          Length = 316

 Score =  326 bits (835), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 175/363 (48%), Positives = 224/363 (61%), Gaps = 84/363 (23%)

Query: 4   YITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVI 63
           ++TN   RMDT+A++LYYP KPL TTR                                 
Sbjct: 1   FLTNXDERMDTMANILYYPQKPLATTR--------------------------------- 27

Query: 64  LNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVF 123
                       SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FRS+F
Sbjct: 28  ------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLF 75

Query: 124 FRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGK 182
           +R+Y D E KR+G    E+FEKP R     +++  YDKLDDDG++APG+RVSGDDV+IGK
Sbjct: 76  YRAYVDTE-KRVGMTVLEKFEKPLRSETLKLKHGTYDKLDDDGLVAPGVRVSGDDVIIGK 134

Query: 183 TITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIP 242
           T  +  + +EL   TK   K+D ST LR++E GIVD+V+L+ N +G KF K+R+R+ ++P
Sbjct: 135 TTPIAPDAEELGQRTKNHIKKDASTPLRSTENGIVDKVLLSTNSEGLKFVKVRMRTTKVP 194

Query: 243 QIGDKFASRHGQKGTCGIQYRQE------------------------------------V 266
           QIGDKFASRHGQKGT GI YRQE                                    V
Sbjct: 195 QIGDKFASRHGQKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKV 254

Query: 267 SSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQ 326
           SS +G  GDATPF + + V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPT YQ
Sbjct: 255 SSLRGYEGDATPFTE-ITVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTXYQ 313

Query: 327 RLK 329
           RL+
Sbjct: 314 RLR 316


>gi|88976165|gb|ABD59040.1| RNA polymerase II second largest subunit, partial [Megacollybia
           platyphylla]
          Length = 558

 Score =  325 bits (834), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 171/357 (47%), Positives = 221/357 (61%), Gaps = 82/357 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+++TNF +RMDT+A++LYYP KPL TTR                              
Sbjct: 248 MGIFLTNFLIRMDTMANILYYPQKPLATTR------------------------------ 277

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 278 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 322

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP+RQ    M++  YDKLDDDG+IAPG  V G+D++I
Sbjct: 323 SIYYRSYMDLEKKSGIAQLEEFEKPSRQNTLRMKHGTYDKLDDDGLIAPGTGVVGEDIII 382

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E GIVDQV++T N +G KF K+RVRS+R
Sbjct: 383 GKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSIR 442

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           IPQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 443 IPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLS 502

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLG 321
            V++  G  GDATPF D + V+ +S+ L+  GYQ RG EVM++GHTGRK+ AQV+LG
Sbjct: 503 KVATLIGNEGDATPFTD-LTVESVSSYLRTKGYQSRGLEVMYHGHTGRKLQAQVYLG 558


>gi|45545355|gb|AAS67525.1| DNA-dependent RNA polymerase II second largest subunit, partial
           [Ustilago maydis]
          Length = 887

 Score =  325 bits (834), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 173/367 (47%), Positives = 225/367 (61%), Gaps = 84/367 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           +G+ I+N   R D++AHVL YP KPL TTR                              
Sbjct: 568 IGIPISNIQSRADSMAHVLLYPQKPLGTTR------------------------------ 597

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+LRFRELPAG N+IVAI+CY+GYNQEDSVI+N S+++RG FR
Sbjct: 598 ---------------SMEHLRFRELPAGQNAIVAIMCYSGYNQEDSVIMNQSSIDRGLFR 642

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+++R Y  AE K++G  Q E+FEKP+R T   M++  YDK+D DG+ APG RVSGDDV+
Sbjct: 643 SMYYRGYM-AEEKKVGVMQLEEFEKPHRDTTIRMKHGTYDKIDADGLCAPGTRVSGDDVI 701

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  LP + +EL   +K  +K+D S  L+++E GI+DQV++T N  G KF K+RVRS 
Sbjct: 702 IGKTAPLPPDSEELGMRSKLHTKKDASVSLKSTENGIIDQVLVTTNSHGNKFVKVRVRST 761

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           R+PQ GDKFASRHGQKGT GI YRQE                                  
Sbjct: 762 RVPQTGDKFASRHGQKGTIGITYRQEDMPFSAEGVTPDIIINPHAIPSRMTIGHLVECLL 821

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             V++  G+ GDATPF + + V+ +S++L+  GYQ RG EVM++GHTGRK+ AQV+LGPT
Sbjct: 822 SKVAALSGQEGDATPFTE-LTVEAVSSILRGLGYQSRGLEVMYHGHTGRKLQAQVYLGPT 880

Query: 324 YYQRLKH 330
           YYQRLKH
Sbjct: 881 YYQRLKH 887


>gi|269978596|gb|ACZ55980.1| RNA polymerase II [Fusarium sp. NRRL 36351]
 gi|269978599|gb|ACZ55982.1| RNA polymerase II [Fusarium armeniacum]
 gi|269978638|gb|ACZ56008.1| RNA polymerase II [Fusarium sporotrichioides]
          Length = 312

 Score =  325 bits (834), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 174/358 (48%), Positives = 219/358 (61%), Gaps = 82/358 (22%)

Query: 6   TNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILN 65
           TN+  RMDT+A++LYYP KPL TTR                                   
Sbjct: 1   TNYSRRMDTMANILYYPQKPLATTR----------------------------------- 25

Query: 66  ASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFR 125
                     SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FRS+FFR
Sbjct: 26  ----------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFR 75

Query: 126 SYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTIT 185
           SY D E K   +  E FEKP +QT   M++  YDKLD+DGI+APG+RVSG+D++IGKT  
Sbjct: 76  SYSDQEKKVGLNYTEVFEKPFQQTTLRMKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAP 135

Query: 186 LPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIG 245
           + +   +L   T+   +RD ST LR++E GIVDQV+LT+N D  K+ K+RVR+ +IPQIG
Sbjct: 136 IDQENQDLGTRTQTHQRRDISTPLRSTENGIVDQVILTVNADNVKYVKVRVRTTKIPQIG 195

Query: 246 DKFASRHGQKGTCGIQYRQE------------------------------------VSSN 269
           DKFASRHGQKGT G+ YRQE                                    VS+ 
Sbjct: 196 DKFASRHGQKGTIGVTYRQEDMPFSREGLTPDIIINPHAIPSRMTIAHLIECLLSKVSTL 255

Query: 270 KGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQR 327
           +G  GDATPF D V V  +S LL+++GYQ RG EVM+NGHTGRK+ AQVF GPTYYQR
Sbjct: 256 EGMEGDATPFTD-VTVDSVSELLRKHGYQSRGFEVMYNGHTGRKLRAQVFFGPTYYQR 312


>gi|269978608|gb|ACZ55988.1| RNA polymerase II [Fusarium camptoceras]
 gi|269978617|gb|ACZ55994.1| RNA polymerase II [Fusarium equiseti]
 gi|269978623|gb|ACZ55998.1| RNA polymerase II [Fusarium longipes]
 gi|269978626|gb|ACZ56000.1| RNA polymerase II [Fusarium incarnatum]
 gi|269978635|gb|ACZ56006.1| RNA polymerase II [Fusarium sp. FRC R-06979]
          Length = 312

 Score =  325 bits (833), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 174/358 (48%), Positives = 219/358 (61%), Gaps = 82/358 (22%)

Query: 6   TNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILN 65
           TN+  RMDT+A++LYYP KPL TTR                                   
Sbjct: 1   TNYSRRMDTMANILYYPQKPLATTR----------------------------------- 25

Query: 66  ASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFR 125
                     SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FRS+FFR
Sbjct: 26  ----------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFR 75

Query: 126 SYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTIT 185
           SY D E K   +  E FEKP +QT   M++  YDKLD+DGI+APG+RVSG+D++IGKT  
Sbjct: 76  SYSDQEKKVGLNYTEIFEKPFQQTTLRMKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAP 135

Query: 186 LPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIG 245
           + +   +L   T+   +RD ST LR++E GIVDQV+LT+N D  K+ K+RVR+ +IPQIG
Sbjct: 136 IDQENQDLGTRTQSHQRRDISTPLRSTENGIVDQVILTVNADNVKYVKVRVRTTKIPQIG 195

Query: 246 DKFASRHGQKGTCGIQYRQE------------------------------------VSSN 269
           DKFASRHGQKGT G+ YRQE                                    VS+ 
Sbjct: 196 DKFASRHGQKGTIGVTYRQEDMPFSREGLTPDIIINPHAIPSRMTIAHLIECLLSKVSTL 255

Query: 270 KGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQR 327
           +G  GDATPF D V V  +S LL+++GYQ RG EVM+NGHTGRK+ AQVF GPTYYQR
Sbjct: 256 EGMEGDATPFTD-VTVDSVSELLRKHGYQSRGFEVMYNGHTGRKLRAQVFFGPTYYQR 312


>gi|123979404|gb|ABM81527.1| RNA polymerase II second largest subunit [Asahinea scholanderi]
          Length = 701

 Score =  325 bits (833), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 176/363 (48%), Positives = 221/363 (60%), Gaps = 84/363 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG   +N+  RMDT+A++LYYP KPL TTR                              
Sbjct: 386 MGXXFSNYEQRMDTMANILYYPQKPLATTR------------------------------ 415

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 416 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 460

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+R+Y D E KRIG    EQFEKP R     +++  YDKLDDDG++APG+RVSG+D++
Sbjct: 461 SLFYRAYTDQE-KRIGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGLVAPGVRVSGEDII 519

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK   KRD ST LR++E GIVDQV+L+ N +G +F K+R+R+ 
Sbjct: 520 IGKTAPIAPDAEELGQRTKLHVKRDTSTPLRSTENGIVDQVLLSTNAEGLRFVKVRMRTT 579

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 580 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGMVPDIIINPHAIPSRMTIAHLIECLL 639

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+  QVF GPT
Sbjct: 640 SKVSSLRGFEGDATPFTE-VTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVTQVFXGPT 698

Query: 324 YYQ 326
           YYQ
Sbjct: 699 YYQ 701


>gi|269978620|gb|ACZ55996.1| RNA polymerase II [Fusarium kyushuense]
 gi|269978629|gb|ACZ56002.1| RNA polymerase II [Fusarium poae]
 gi|269978632|gb|ACZ56004.1| RNA polymerase II [Gibberella pulicaris]
 gi|269978641|gb|ACZ56010.1| RNA polymerase II [Fusarium venenatum]
          Length = 312

 Score =  325 bits (833), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 174/358 (48%), Positives = 219/358 (61%), Gaps = 82/358 (22%)

Query: 6   TNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILN 65
           TN+  RMDT+A++LYYP KPL TTR                                   
Sbjct: 1   TNYSRRMDTMANILYYPQKPLATTR----------------------------------- 25

Query: 66  ASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFR 125
                     SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FRS+FFR
Sbjct: 26  ----------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFR 75

Query: 126 SYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTIT 185
           SY D E K   +  E FEKP +QT   M++  YDKLD+DGI+APG+RVSG+D++IGKT  
Sbjct: 76  SYSDQEKKVGLNYTEIFEKPFQQTTLRMKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAP 135

Query: 186 LPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIG 245
           + +   +L   T+   +RD ST LR++E GIVDQV+LT+N D  K+ K+RVR+ +IPQIG
Sbjct: 136 IDQENQDLGTRTQTHQRRDISTPLRSTENGIVDQVILTVNADNVKYVKVRVRTTKIPQIG 195

Query: 246 DKFASRHGQKGTCGIQYRQE------------------------------------VSSN 269
           DKFASRHGQKGT G+ YRQE                                    VS+ 
Sbjct: 196 DKFASRHGQKGTIGVTYRQEDMPFSREGLTPDIIINPHAIPSRMTIAHLIECLLSKVSTL 255

Query: 270 KGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQR 327
           +G  GDATPF D V V  +S LL+++GYQ RG EVM+NGHTGRK+ AQVF GPTYYQR
Sbjct: 256 EGMEGDATPFTD-VTVDSVSELLRKHGYQSRGFEVMYNGHTGRKLRAQVFFGPTYYQR 312


>gi|394998817|gb|AFN44327.1| RNA polymerase II second largest subunit, partial [Caloplaca
           chlorina]
          Length = 317

 Score =  325 bits (833), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 175/362 (48%), Positives = 222/362 (61%), Gaps = 84/362 (23%)

Query: 4   YITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVI 63
           ++TN   RMDT+A++LYYP KPL TTR                                 
Sbjct: 1   FLTNXXERMDTMANILYYPQKPLATTR--------------------------------- 27

Query: 64  LNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVF 123
                       SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FRS+F
Sbjct: 28  ------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLF 75

Query: 124 FRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGK 182
           +R+Y D E KR+G    E+FEKP R     +++  YDKLDDDG++APG+RVSGDDV+IGK
Sbjct: 76  YRAYVDTE-KRVGMTVLEKFEKPXRSETLKLKHGTYDKLDDDGLVAPGVRVSGDDVIIGK 134

Query: 183 TITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIP 242
           T  +  + +EL   TK   K+D ST LR++E GIVD+V+L+ N +G KF K+R+R+ +IP
Sbjct: 135 TTPIAPDAEELGQRTKNHIKKDASTPLRSTENGIVDKVLLSTNSEGLKFVKVRMRTTKIP 194

Query: 243 QIGDKFASRHGQKGTCGIQYRQE------------------------------------V 266
           QIGDKFASRHGQKGT GI YRQE                                    V
Sbjct: 195 QIGDKFASRHGQKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKV 254

Query: 267 SSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQ 326
           SS +G  GDATPF + + V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPTYY 
Sbjct: 255 SSLRGYEGDATPFTE-ITVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYX 313

Query: 327 RL 328
            L
Sbjct: 314 XL 315


>gi|320172582|gb|ADW24174.1| RNA polymerase II second largest subunit [Gloeophyllum carbonarium]
          Length = 461

 Score =  325 bits (833), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 170/355 (47%), Positives = 219/355 (61%), Gaps = 82/355 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF VRMDT+A++LYYP KPL TTR                              
Sbjct: 153 MGIYLTNFLVRMDTMANILYYPQKPLATTR------------------------------ 182

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYLRFRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 183 ---------------SMEYLRFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 227

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP R T   M++  YDKL+DDG+IAPG  V+G+D++I
Sbjct: 228 SIYYRSYMDLEKKSGVQQLEEFEKPTRDTTLRMKHGTYDKLEDDGLIAPGTGVNGEDIII 287

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  ++RD ST L+++E+GIVDQV++T N +G KF K+RVRS R
Sbjct: 288 GKTAPIPPDSEELGQRTRSHTRRDVSTALKSTESGIVDQVLITTNSEGQKFVKVRVRSTR 347

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           +PQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 348 VPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGITPDVIINPHAIPSRMTIGHLVECLLS 407

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVF 319
            V++  G  GDATPF D + V+ +ST L++ GYQ RG EVM+ GHTGRK+ AQ++
Sbjct: 408 KVATLIGNEGDATPFTD-LTVESVSTFLRQKGYQSRGLEVMYYGHTGRKLQAQIY 461


>gi|383282247|gb|AFH01320.1| RNA polymerase II subunit-like protein, partial [Pleosporales sp.
           Dzf12]
          Length = 310

 Score =  325 bits (833), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 173/357 (48%), Positives = 218/357 (61%), Gaps = 84/357 (23%)

Query: 11  RMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVE 70
           RM+T+ +VLYYP KPL TTR                                        
Sbjct: 1   RMETMMNVLYYPQKPLATTR---------------------------------------- 20

Query: 71  RGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFRSYKDA 130
                SMEYL+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FRS+F+R+Y + 
Sbjct: 21  -----SMEYLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTEQ 75

Query: 131 ESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPEN 189
           E KRIG +  EQFEKP R     ++   YDKLDDDG++APG+RVSGDD++IGKT  +P +
Sbjct: 76  E-KRIGVNVLEQFEKPTRADTLRLKGGTYDKLDDDGVVAPGVRVSGDDIIIGKTAPIPTD 134

Query: 190 EDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFA 249
             EL   T   +KRD ST LR++E GIVDQV+ T N +G +F K+R R+ ++PQIGDKFA
Sbjct: 135 AKELGQKTALHTKRDVSTPLRSTENGIVDQVLFTTNTEGLRFVKVRTRTTKVPQIGDKFA 194

Query: 250 SRHGQKGTCGIQYRQE------------------------------------VSSNKGEI 273
           SRHGQKGT GI YRQE                                    V + +G+ 
Sbjct: 195 SRHGQKGTIGITYRQEDMPFSREGLTPDLIINPHAIPSRMTIAHLVECLLSKVGALQGQE 254

Query: 274 GDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQRLKH 330
           GDATPF D V V+ IS +L + GYQ RG EVM+NGHTG+K+ AQ+FLGPTYYQRL+H
Sbjct: 255 GDATPFTD-VTVEDISRILADMGYQKRGFEVMYNGHTGKKLRAQIFLGPTYYQRLRH 310


>gi|194320287|gb|ACF48384.1| RNA polymerase II second largest subunit [Alectoria ochroleuca]
          Length = 311

 Score =  325 bits (833), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 175/356 (49%), Positives = 220/356 (61%), Gaps = 84/356 (23%)

Query: 11  RMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVE 70
           RMDT+A++LYYP KPL TTR                                        
Sbjct: 3   RMDTMANILYYPQKPLATTR---------------------------------------- 22

Query: 71  RGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFRSYKDA 130
                SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FRS+F+R+Y D 
Sbjct: 23  -----SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYTDQ 77

Query: 131 ESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPEN 189
           E KRIG    EQFEKP R     +++  YDKLDDDG++APG+RVSG+D++IGKT  +  +
Sbjct: 78  E-KRIGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGLVAPGVRVSGEDIIIGKTAPIAPD 136

Query: 190 EDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFA 249
            +EL   TK   KRD ST LR++E GIVDQV+L+ N +G +F K+R+R+ +IPQIGDKFA
Sbjct: 137 AEELGQRTKLHVKRDTSTPLRSTENGIVDQVLLSTNAEGLRFVKVRMRTTKIPQIGDKFA 196

Query: 250 SRHGQKGTCGIQYRQE------------------------------------VSSNKGEI 273
           SRHGQKGT GI YRQE                                    VSS +G  
Sbjct: 197 SRHGQKGTIGITYRQEDMPFTSEGMVPDLIINPHAIPSRMTIAHLIECLLSKVSSLRGFE 256

Query: 274 GDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQRLK 329
           GDATPF + V V  +S LL+E+GYQ RG E+M+NGHTGRK+  QVFLGPTYYQRL+
Sbjct: 257 GDATPFTE-VTVDSVSRLLREHGYQSRGFEIMYNGHTGRKLVTQVFLGPTYYQRLR 311


>gi|269978602|gb|ACZ55984.1| RNA polymerase II [Fusarium avenaceum]
          Length = 312

 Score =  325 bits (833), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 174/358 (48%), Positives = 219/358 (61%), Gaps = 82/358 (22%)

Query: 6   TNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILN 65
           TN+  RMDT+A++LYYP KPL TTR                                   
Sbjct: 1   TNYSRRMDTMANILYYPQKPLATTR----------------------------------- 25

Query: 66  ASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFR 125
                     SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FRS+FFR
Sbjct: 26  ----------SMEHLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFR 75

Query: 126 SYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTIT 185
           SY D E K   +  E FEKP +QT   M++  YDKLD+DGI+APG+RVSG+D++IGKT  
Sbjct: 76  SYSDQEKKVGLNYTEIFEKPFQQTTLRMKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAP 135

Query: 186 LPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIG 245
           + +   +L   T+   +RD ST LR++E GIVDQV+LT+N D  K+ K+RVR+ +IPQIG
Sbjct: 136 IDQENQDLGTRTQSHQRRDISTPLRSTENGIVDQVILTVNADNVKYVKVRVRTTKIPQIG 195

Query: 246 DKFASRHGQKGTCGIQYRQE------------------------------------VSSN 269
           DKFASRHGQKGT G+ YRQE                                    VS+ 
Sbjct: 196 DKFASRHGQKGTIGVTYRQEDMPFSREGLTPDIIINPHAIPSRMTIAHLIECLLSKVSTL 255

Query: 270 KGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQR 327
           +G  GDATPF D V V  +S LL+++GYQ RG EVM+NGHTGRK+ AQVF GPTYYQR
Sbjct: 256 EGMEGDATPFTD-VTVDSVSDLLRKHGYQSRGFEVMYNGHTGRKLRAQVFFGPTYYQR 312


>gi|113707353|gb|ABI36584.1| RNA polymerase II second largest subunit [Icmadophila ericetorum]
          Length = 708

 Score =  325 bits (832), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 175/363 (48%), Positives = 221/363 (60%), Gaps = 84/363 (23%)

Query: 3   VYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSV 62
           +++TNF  RMD   ++LYYP KPL TTR                                
Sbjct: 393 IFLTNFSERMDNAFNILYYPQKPLATTR-------------------------------- 420

Query: 63  ILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSV 122
                        SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FRS+
Sbjct: 421 -------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSL 467

Query: 123 FFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIG 181
           ++R+Y D E KR+G    EQFEKP R     +++  YDKLDDDG++APG+RVSG+D++IG
Sbjct: 468 YYRTYTDQE-KRVGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGLVAPGVRVSGEDIIIG 526

Query: 182 KTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRI 241
           KT  +  + +EL   TK   KRD ST LR +E G++D+VML+ N +G +F KIR R+ +I
Sbjct: 527 KTEPIAPDSEELGQRTKLHVKRDKSTPLRTTENGLIDKVMLSTNAEGLRFVKIRTRTTKI 586

Query: 242 PQIGDKFASRHGQKGTCGIQYRQE------------------------------------ 265
           PQIGDKFASRHGQKGT GI YRQE                                    
Sbjct: 587 PQIGDKFASRHGQKGTIGITYRQEDMPFTSEGIVPDLIINPHAIPSRMTIAHLIECQLSK 646

Query: 266 VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYY 325
           VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPTYY
Sbjct: 647 VSSLRGYEGDATPFTE-VTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYY 705

Query: 326 QRL 328
           QRL
Sbjct: 706 QRL 708


>gi|194320159|gb|ACF48304.1| DNA-dependent RNA polymerase II second largest subunit [Polychidium
           muscicola]
          Length = 312

 Score =  325 bits (832), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 176/356 (49%), Positives = 220/356 (61%), Gaps = 84/356 (23%)

Query: 11  RMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVE 70
           RMDT+A++LYYP KPL TTR                                        
Sbjct: 4   RMDTMANILYYPQKPLATTR---------------------------------------- 23

Query: 71  RGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFRSYKDA 130
                SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FRS+F+RSY D 
Sbjct: 24  -----SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRSYTDQ 78

Query: 131 ESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPEN 189
           E KRIG    EQFEKP +     +++  YDKLDDDGI+ PG+RV+G+D++IGKT  +  +
Sbjct: 79  E-KRIGMSVVEQFEKPMKSDTLKLKHGTYDKLDDDGIVPPGVRVTGEDIIIGKTAPIAPD 137

Query: 190 EDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFA 249
            +EL   TK   KRD ST LR++E GIVDQV+LT N +G +F K+R+R+ ++PQIGDKFA
Sbjct: 138 AEELGQRTKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKVPQIGDKFA 197

Query: 250 SRHGQKGTCGIQYRQE------------------------------------VSSNKGEI 273
           SRHGQKGT GI YRQE                                    VSS +G  
Sbjct: 198 SRHGQKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGFE 257

Query: 274 GDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQRLK 329
           GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPTYYQRL+
Sbjct: 258 GDATPFTE-VTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRLR 312


>gi|46277298|gb|AAS86839.1| DNA-dependent RNA polymerase II [Ascobolus carbonarius]
          Length = 555

 Score =  325 bits (832), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 175/363 (48%), Positives = 223/363 (61%), Gaps = 84/363 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TNF  RMDT+A++LYYP KPL TTR                              
Sbjct: 240 MGVFLTNFPERMDTMANILYYPQKPLATTR------------------------------ 269

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAI  Y+GYNQEDSVI+N S+++RG FR
Sbjct: 270 ---------------SMEYLKFRELPAGQNAIVAIAVYSGYNQEDSVIMNQSSIDRGLFR 314

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+R+Y D E KR+G    E+FEKP R     +++  YDKLDDDG++APG+R+SG+D++
Sbjct: 315 SLFYRAYLDQE-KRVGMSVVEEFEKPQRSETLRLKHGTYDKLDDDGLVAPGVRISGEDII 373

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK  +KRD ST LR++E GIVD+VMLT N  G KF K+R+R+ 
Sbjct: 374 IGKTAPIAPDSEELGQRTKYHTKRDVSTPLRSTENGIVDKVMLTTNASGLKFVKVRMRTT 433

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YR E                                  
Sbjct: 434 KIPQIGDKFASRHGQKGTIGITYRCEDMPFTTEGVVPDLIINPHAIPSRMTIAHLIECQL 493

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             V+S +G  GDATPF + V V  +S+LL++ GYQ RG E+M+NGHTGRK+ AQVF GPT
Sbjct: 494 SKVASLRGFEGDATPFTE-VTVDSVSSLLRDAGYQSRGFEIMYNGHTGRKLVAQVFFGPT 552

Query: 324 YYQ 326
           YYQ
Sbjct: 553 YYQ 555


>gi|119644059|gb|ABL85604.1| RNA polymerase II second largest subunit [Hypotrachyna degelii]
          Length = 708

 Score =  325 bits (832), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 176/363 (48%), Positives = 221/363 (60%), Gaps = 84/363 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG    N+  RMDT+A++LYYP KPL TTR                              
Sbjct: 393 MGXXSFNYEQRMDTMANILYYPQKPLATTR------------------------------ 422

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 423 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 467

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+R+Y D E KRIG    EQFEKP R     +++  YDKLDDDG++APG+RVSG+D++
Sbjct: 468 SLFYRAYTDQE-KRIGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGLVAPGVRVSGEDII 526

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK   KRD ST LR++E GIVDQV+L+ N +G +F K+R+R+ 
Sbjct: 527 IGKTAPIAPDAEELGQRTKLHVKRDTSTPLRSTENGIVDQVLLSTNAEGLRFVKVRMRTT 586

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 587 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGMVPDLIINPHAIPSRMTIAHLIECLL 646

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+  Q+FLGPT
Sbjct: 647 SKVSSLRGFEGDATPFTE-VTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVTQIFLGPT 705

Query: 324 YYQ 326
           YYQ
Sbjct: 706 YYQ 708


>gi|394998895|gb|AFN44366.1| RNA polymerase II second largest subunit, partial [Xanthoria sp.
           Gaya 31]
          Length = 585

 Score =  325 bits (832), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 174/357 (48%), Positives = 220/357 (61%), Gaps = 84/357 (23%)

Query: 11  RMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVE 70
           RMDT+A++LYYP KPL TTR                                        
Sbjct: 276 RMDTMANILYYPQKPLATTR---------------------------------------- 295

Query: 71  RGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFRSYKDA 130
                SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FRS+F+R+Y D 
Sbjct: 296 -----SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYVDT 350

Query: 131 ESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPEN 189
           E KR+G    E+FEKP R     +++  YDKLDDDG++APG+RVSGDDV+IGKT  +  +
Sbjct: 351 E-KRVGMTVLEKFEKPLRSETLKLKHGTYDKLDDDGLVAPGVRVSGDDVIIGKTTPIAPD 409

Query: 190 EDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFA 249
            +E+   TK   K+D ST LR++E GIVD+V+L+ N +G KF K+R+R+ +IPQIGDKFA
Sbjct: 410 AEEMGQRTKNHVKKDASTPLRSTENGIVDKVLLSTNSEGLKFVKVRMRTTKIPQIGDKFA 469

Query: 250 SRHGQKGTCGIQYRQE------------------------------------VSSNKGEI 273
           SRHGQKGT GI YRQE                                    VSS +G  
Sbjct: 470 SRHGQKGTIGITYRQEDMPFTSEGVVPDLIINPHAIPSRMTIAHLIECQLSKVSSLRGYE 529

Query: 274 GDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQRLKH 330
           GDATPF + + V  +S LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPTYYQR  H
Sbjct: 530 GDATPFTE-ITVDSVSKLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTYYQRFXH 585


>gi|363544136|gb|AEW26546.1| RNA polymerase II second largest subunit [Fusarium solani]
          Length = 314

 Score =  324 bits (831), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 172/358 (48%), Positives = 219/358 (61%), Gaps = 82/358 (22%)

Query: 11  RMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVE 70
           RMDT+A++LYYP KPL TTR                                        
Sbjct: 2   RMDTMANILYYPQKPLATTR---------------------------------------- 21

Query: 71  RGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFRSYKDA 130
                SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FRS+FFRSY D 
Sbjct: 22  -----SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYSDQ 76

Query: 131 ESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENE 190
           E K   +  E FEKP +Q+   M++  YDKLD+DGI+APG+RVSG+D++IGKT  + +  
Sbjct: 77  EKKVGLNYTEVFEKPFQQSTLRMKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAPIDQEN 136

Query: 191 DELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFAS 250
            +L   T    +RD ST LR++E GIVD V++T+N D  K+ K+RVR+ +IPQIGDKFAS
Sbjct: 137 QDLGTRTTVHQRRDISTPLRSTENGIVDSVIVTVNADNVKYVKVRVRTTKIPQIGDKFAS 196

Query: 251 RHGQKGTCGIQYRQE------------------------------------VSSNKGEIG 274
           RHGQKGT G+ YRQE                                    VS+ +G  G
Sbjct: 197 RHGQKGTIGVTYRQEDMPFTREGVTPDIIINPHAIPSRMTIAHLIECLLSKVSTLEGMEG 256

Query: 275 DATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQRLKHMV 332
           DATPF D V V  +S LL+++GYQ RG E+M+NGHTGRK+ AQVF GPTYYQRL+HMV
Sbjct: 257 DATPFTD-VTVDSVSELLRKHGYQSRGFEIMYNGHTGRKLRAQVFFGPTYYQRLRHMV 313


>gi|119644045|gb|ABL85603.1| RNA polymerase II second largest subunit [Hypotrachyna caraccensis]
          Length = 708

 Score =  324 bits (831), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 176/363 (48%), Positives = 221/363 (60%), Gaps = 84/363 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG    N+  RMDT+A++LYYP KPL TTR                              
Sbjct: 393 MGXXSYNYEQRMDTMANILYYPQKPLATTR------------------------------ 422

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FR
Sbjct: 423 ---------------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFR 467

Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
           S+F+R+Y D E KRIG    EQFEKP R     +++  YDKLDDDG++APG+RVSG+D++
Sbjct: 468 SLFYRAYTDQE-KRIGMSVVEQFEKPMRSDTLKLKHGTYDKLDDDGLVAPGVRVSGEDII 526

Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
           IGKT  +  + +EL   TK   KRD ST LR++E GIVDQV+L+ N +G +F K+R+R+ 
Sbjct: 527 IGKTAPIAPDAEELGQRTKLHVKRDTSTPLRSTENGIVDQVLLSTNAEGLRFVKVRMRTT 586

Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
           +IPQIGDKFASRHGQKGT GI YRQE                                  
Sbjct: 587 KIPQIGDKFASRHGQKGTIGITYRQEDMPFTSEGMVPDLIINPHAIPSRMTIAHLIECLL 646

Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
             VSS +G  GDATPF + V V  +S LL+E+GYQ RG EVM+NGHTGRK+  Q+FLGPT
Sbjct: 647 SKVSSLRGFEGDATPFTE-VTVDSVSRLLREHGYQSRGFEVMYNGHTGRKLVTQIFLGPT 705

Query: 324 YYQ 326
           YYQ
Sbjct: 706 YYQ 708


>gi|88976114|gb|ABD59033.1| RNA polymerase II second largest subunit, partial [Clavaria
           inaequalis]
          Length = 667

 Score =  324 bits (831), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 167/354 (47%), Positives = 219/354 (61%), Gaps = 82/354 (23%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MG+Y+TNF +RMDT+A++LYYP KPL TTR                              
Sbjct: 360 MGIYLTNFLIRMDTMANILYYPQKPLATTR------------------------------ 389

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                          SMEYL+FRELPAG N+IVAILCY+GYNQEDSVI+N S+++RG FR
Sbjct: 390 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 434

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+++RSY D E K    Q E+FEKP R+T   M++  YDKL+ DG++APG RV GDD++I
Sbjct: 435 SIYYRSYMDLEKKSGVQQLEEFEKPTRETTLRMKHGSYDKLESDGLVAPGTRVRGDDIII 494

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT  +P + +EL   T+  +KRD ST L+++E G++DQV++T N +G KF K+R+RS+R
Sbjct: 495 GKTAPIPPDSEELGQRTRSHTKRDVSTPLKSTENGVIDQVLITTNSEGQKFVKVRLRSIR 554

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           +PQIGDKFASRHGQKGT GI YRQE                                   
Sbjct: 555 VPQIGDKFASRHGQKGTIGITYRQEDMPFTAEGIVPDIIINPHAIPSRMTIGHLVECLLS 614

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQV 318
            V++  G  GDATPF D + V+ +ST L++ GYQ RG EVM++GHTGRK+ AQV
Sbjct: 615 KVATLIGNEGDATPFTD-LTVESVSTFLRQKGYQSRGLEVMYHGHTGRKLQAQV 667


>gi|6606095|gb|AAF19060.1|AF107788_1 DNA-dependent RNA polymerase II RPB140 [Pichia kudriavzevii]
          Length = 905

 Score =  324 bits (831), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 170/359 (47%), Positives = 220/359 (61%), Gaps = 82/359 (22%)

Query: 1   MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
           MGV++TN++VRMDT+A++LYYP KPL  T+S                             
Sbjct: 593 MGVFLTNYNVRMDTMANILYYPQKPLAKTQS----------------------------- 623

Query: 61  SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
                           ME+L+FRELPAG N+IVAI CY+GYNQEDS+I+N S+++RG FR
Sbjct: 624 ----------------MEFLKFRELPAGQNAIVAICCYSGYNQEDSMIMNQSSIDRGLFR 667

Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
           S+FFRSY D E +      E+FEKP R    G +   Y+KLDDDG+I+PG+RVSGDD++I
Sbjct: 668 SLFFRSYMDQERRNGISVVEEFEKPMRSNTLGFKAGTYEKLDDDGLISPGVRVSGDDIII 727

Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
           GKT+ +P + +EL   TK  +KRD ST LR +E+GIVDQV+LT N +G +F K+R+R+ +
Sbjct: 728 GKTVPIPPDTEELGQRTKYHTKRDASTPLRATESGIVDQVLLTTNSEGLRFVKVRMRTTK 787

Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
           +PQIGDKFASRHGQKGT GI YR E                                   
Sbjct: 788 VPQIGDKFASRHGQKGTIGITYRNEDMPFTSEGIVPDLIINPHAIPSRMTVAHLIECLLS 847

Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
            V+S +G  GDATPF D + V  +S LL+E GYQ RG EVM+NGHTG+K+ AQVF GPT
Sbjct: 848 KVASLRGYEGDATPFTD-LTVDAVSKLLRENGYQSRGFEVMYNGHTGKKLMAQVFFGPT 905


>gi|269978605|gb|ACZ55986.1| RNA polymerase II [Fusarium boothii]
 gi|269978614|gb|ACZ55992.1| RNA polymerase II [Fusarium culmorum]
          Length = 312

 Score =  324 bits (830), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 173/358 (48%), Positives = 219/358 (61%), Gaps = 82/358 (22%)

Query: 6   TNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILN 65
           TN+  RMDT+A++LYYP KPL TTR                                   
Sbjct: 1   TNYSRRMDTMANILYYPQKPLATTR----------------------------------- 25

Query: 66  ASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFR 125
                     SME+L+FRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FRS+FFR
Sbjct: 26  ----------SMEFLKFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFR 75

Query: 126 SYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTIT 185
           SY D E K   +  E FEKP +QT   M++  YDKLD+DGI+APG+RVSG+D++IGKT  
Sbjct: 76  SYSDQEKKVGLNYTEIFEKPFQQTTLRMKHGTYDKLDEDGIVAPGVRVSGEDIIIGKTAP 135

Query: 186 LPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIG 245
           + +   +L   T+   +RD ST LR++E GIVDQV+LT+N D  K+ K+RVR+ +IPQIG
Sbjct: 136 IDQENQDLGTRTQTHQRRDISTPLRSTENGIVDQVILTVNADNVKYVKVRVRTTKIPQIG 195

Query: 246 DKFASRHGQKGTCGIQYRQE------------------------------------VSSN 269
           DKFASRHGQKGT G+ YRQE                                    VS+ 
Sbjct: 196 DKFASRHGQKGTIGVTYRQEDMPFSREGLTPDIIINPHAIPSRMTIAHLIECLLSKVSTL 255

Query: 270 KGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQR 327
           +G  GDATPF D V V  +S +L+++GYQ RG EVM+NGHTGRK+ AQVF GPTYYQR
Sbjct: 256 EGMEGDATPFTD-VTVDSVSDILRKHGYQSRGFEVMYNGHTGRKLRAQVFFGPTYYQR 312


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.322    0.138    0.407 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,745,506,468
Number of Sequences: 23463169
Number of extensions: 279954764
Number of successful extensions: 606080
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 10469
Number of HSP's successfully gapped in prelim test: 653
Number of HSP's that attempted gapping in prelim test: 557783
Number of HSP's gapped (non-prelim): 34174
length of query: 451
length of database: 8,064,228,071
effective HSP length: 146
effective length of query: 305
effective length of database: 8,933,572,693
effective search space: 2724739671365
effective search space used: 2724739671365
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 79 (35.0 bits)