BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7583
(451 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P08266|RPB2_DROME DNA-directed RNA polymerase II subunit RPB2 OS=Drosophila
melanogaster GN=RpII140 PE=2 SV=2
Length = 1176
Score = 767 bits (1980), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/487 (77%), Positives = 394/487 (80%), Gaps = 81/487 (16%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
MGVYITNFHVRMDTLAHVLYYP KPLVTTR
Sbjct: 735 MGVYITNFHVRMDTLAHVLYYPMKPLVTTR------------------------------ 764
Query: 61 SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
SMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERG+FR
Sbjct: 765 ---------------SMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFR 809
Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
SVF+RSYKD+E+KR+GDQEE FEKP+R TCQGMRNA YDKLDDDGIIAPG+RVSGDDVVI
Sbjct: 810 SVFYRSYKDSENKRVGDQEENFEKPHRGTCQGMRNAHYDKLDDDGIIAPGIRVSGDDVVI 869
Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
GKTITLPEN+DEL+ TKRFSKRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVR
Sbjct: 870 GKTITLPENDDELDSNTKRFSKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVR 929
Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
IPQIGDKFASRHGQKGTCGIQYRQE
Sbjct: 930 IPQIGDKFASRHGQKGTCGIQYRQEDMAFTCEGLAPDIIINPHAIPSRMTIGHLIECLQG 989
Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
+ SNKGEIGDATPFNDAVNVQKIST LQEYGY LRGNEVM+NGHTGRKINAQVFLGPTY
Sbjct: 990 KLGSNKGEIGDATPFNDAVNVQKISTFLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTY 1049
Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL
Sbjct: 1050 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 1109
Query: 385 FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
FEVSDPYR+H+CNFCGLIAIAN+RNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI
Sbjct: 1110 FEVSDPYRVHICNFCGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 1169
Query: 445 APRLMVV 451
APRLMV
Sbjct: 1170 APRLMVT 1176
>sp|P30876|RPB2_HUMAN DNA-directed RNA polymerase II subunit RPB2 OS=Homo sapiens GN=POLR2B
PE=1 SV=1
Length = 1174
Score = 699 bits (1803), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/487 (70%), Positives = 379/487 (77%), Gaps = 81/487 (16%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
MGVYITNFHVRMDTLAHVLYYP KPLVTTR
Sbjct: 733 MGVYITNFHVRMDTLAHVLYYPQKPLVTTR------------------------------ 762
Query: 61 SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
SMEYLRFRELPAGINSIVAI YTGYNQEDSVI+N SAV+RG+FR
Sbjct: 763 ---------------SMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFR 807
Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
SVF+RSYK+ ESK+ DQEE FEKP R+TCQGMR+AIYDKLDDDG+IAPG+RVSGDDV+I
Sbjct: 808 SVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVII 867
Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
GKT+TLPENEDELE T +R++KRD STFLR SETGIVDQVM+TLN +GYKFCKIRVRSVR
Sbjct: 868 GKTVTLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVR 927
Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
IPQIGDKFASRHGQKGTCGIQYRQE
Sbjct: 928 IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQG 987
Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
VS+NKGEIGDATPFNDAVNVQKIS LL +YGY LRGNEV++NG TGRKI +Q+F+GPTY
Sbjct: 988 KVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTY 1047
Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
YQRLKHMVDDKIHSRARGP+QIL RQPMEGR+RDGGLRFGEMERDCQI+HGAAQFLRERL
Sbjct: 1048 YQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERL 1107
Query: 385 FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
FE SDPY++HVCN CG++AIAN R +T+EC+GC+NKTQIS VR+PYA KLLFQELMSM+I
Sbjct: 1108 FEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSI 1167
Query: 445 APRLMVV 451
APR+M V
Sbjct: 1168 APRMMSV 1174
>sp|Q8CFI7|RPB2_MOUSE DNA-directed RNA polymerase II subunit RPB2 OS=Mus musculus GN=Polr2b
PE=2 SV=2
Length = 1174
Score = 697 bits (1800), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/487 (69%), Positives = 379/487 (77%), Gaps = 81/487 (16%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
MGVYITNFHVRMDTLAHVLYYP KPLVTTR
Sbjct: 733 MGVYITNFHVRMDTLAHVLYYPQKPLVTTR------------------------------ 762
Query: 61 SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
SMEYLRFRELPAGINSIVAI YTGYNQEDSVI+N SAV+RG+FR
Sbjct: 763 ---------------SMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFR 807
Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
SVF+RSYK+ ESK+ DQEE FEKP R+TCQGMR+AIY+KLDDDG+IAPG+RVSGDDV+I
Sbjct: 808 SVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRHAIYEKLDDDGLIAPGVRVSGDDVII 867
Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
GKT+TLPENEDELE T +R++KRD STFLR SETGIVDQVM+TLN +GYKFCKIRVRSVR
Sbjct: 868 GKTVTLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVR 927
Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
IPQIGDKFASRHGQKGTCGIQYRQE
Sbjct: 928 IPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQG 987
Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
VS+NKGEIGDATPFNDAVNVQKIS LL +YGY LRGNEV++NG TGRKI +Q+F+GPTY
Sbjct: 988 KVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTY 1047
Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
YQRLKHMVDDKIHSRARGP+QIL RQPMEGR+RDGGLRFGEMERDCQI+HGAAQFLRERL
Sbjct: 1048 YQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERL 1107
Query: 385 FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
FE SDPY++HVCN CG++AIAN R +T+EC+GC+NKTQIS VR+PYA KLLFQELMSM+I
Sbjct: 1108 FEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSI 1167
Query: 445 APRLMVV 451
APR+M V
Sbjct: 1168 APRMMSV 1174
>sp|Q10578|RPB2_CAEEL DNA-directed RNA polymerase II subunit RPB2 OS=Caenorhabditis elegans
GN=rpb-2 PE=2 SV=2
Length = 1193
Score = 647 bits (1670), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/486 (64%), Positives = 360/486 (74%), Gaps = 81/486 (16%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
MGVY TNFHVRMDTLAHVLYYP KPLVTTR
Sbjct: 739 MGVYTTNFHVRMDTLAHVLYYPQKPLVTTR------------------------------ 768
Query: 61 SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
SMEYLRF ELPAGIN+IVAIL Y+GYNQEDSVI+N SA++RG FR
Sbjct: 769 ---------------SMEYLRFNELPAGINAIVAILSYSGYNQEDSVIMNNSAIDRGLFR 813
Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
SVF+RSY+D E+ EE EKP R+ C GMR+++YDKLD+DGII+PG+RVSGDDV+I
Sbjct: 814 SVFYRSYRDNEANLDNANEELIEKPTREKCSGMRHSLYDKLDEDGIISPGMRVSGDDVII 873
Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
GKT+ LP+ +D+L+ + K++ KRD STFLR+SETGIVDQVML+LN DG KF KIR+RSVR
Sbjct: 874 GKTVALPDIDDDLDASGKKYPKRDASTFLRSSETGIVDQVMLSLNSDGNKFVKIRMRSVR 933
Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
+PQIGDKFASRHGQKGT GI YRQE
Sbjct: 934 LPQIGDKFASRHGQKGTMGIMYRQEDMPFTAEGLTPDIIINPHAVPSRMTIGHLIECLQG 993
Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
+S+NKGEIGDATPFND VNVQKIS LL EYGY LRGNEVM+NGHTG+K+ Q+F GPTY
Sbjct: 994 KLSANKGEIGDATPFNDTVNVQKISGLLCEYGYHLRGNEVMYNGHTGKKLTTQIFFGPTY 1053
Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
YQRLKHMVDDKIHSRARGP+Q++ RQPMEGRARDGGLRFGEMERDCQISHGA QFLRERL
Sbjct: 1054 YQRLKHMVDDKIHSRARGPIQMMNRQPMEGRARDGGLRFGEMERDCQISHGATQFLRERL 1113
Query: 385 FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
FEVSDPY ++VCN CGLI +AN+R N+FECK C+NKTQ+S VR+PYA KLLFQELMSM+I
Sbjct: 1114 FEVSDPYHVYVCNNCGLIVVANLRTNSFECKACRNKTQVSAVRIPYACKLLFQELMSMSI 1173
Query: 445 APRLMV 450
APRLMV
Sbjct: 1174 APRLMV 1179
>sp|Q54J75|RPB2_DICDI DNA-directed RNA polymerase II subunit rpb2 OS=Dictyostelium
discoideum GN=polr2b PE=3 SV=1
Length = 1170
Score = 598 bits (1543), Expect = e-170, Method: Compositional matrix adjust.
Identities = 287/484 (59%), Positives = 352/484 (72%), Gaps = 82/484 (16%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
MGVYITN+ +RMDT+AHVL+YP KPLVTTR
Sbjct: 729 MGVYITNYQLRMDTMAHVLFYPQKPLVTTR------------------------------ 758
Query: 61 SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
SMEYL FRELPAG N VAI CY+GYNQEDSVILN SA++RG FR
Sbjct: 759 ---------------SMEYLHFRELPAGQNVCVAIACYSGYNQEDSVILNQSAIDRGLFR 803
Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
S+F+R+YKD + K+ EE FEKP R TC GMR+ Y+K+DDDG++APG+RV+GDD++I
Sbjct: 804 SMFYRAYKDEQKKQTSLMEEVFEKPERDTCAGMRHGSYEKIDDDGLVAPGVRVAGDDIII 863
Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
GKT LP ++D+L T+R +KRD ST LR+SETGIVDQV+LT + +G+KFCK+RVRS+R
Sbjct: 864 GKTTPLPPSDDDLGPKTRRHTKRDSSTALRSSETGIVDQVILTTSGEGFKFCKVRVRSMR 923
Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
+PQIGDKF+SRHGQKGTCG+ YRQE
Sbjct: 924 VPQIGDKFSSRHGQKGTCGMAYRQEDLPFTVEGIVPDIIVNPHAIPSRMTIGQLIECLLG 983
Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
VS++ G+ GDATPF D V V+ IS L + GYQ+ G+EVM+NGHTGR+++AQ+F+GPTY
Sbjct: 984 KVSASTGDEGDATPFTD-VTVEAISQALHKIGYQMTGHEVMYNGHTGRRMDAQIFIGPTY 1042
Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
YQRLKHMVDDKIHSR+RGPVQIL RQP+EGR+RDGGLRFGEMERDC ISHGAAQFL+ERL
Sbjct: 1043 YQRLKHMVDDKIHSRSRGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGAAQFLKERL 1102
Query: 385 FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
F+ SD YR+H+C+ CGLIAIAN++ N+FEC+ CKNKTQISQ+R+PYAAKLLFQELMSM+I
Sbjct: 1103 FDQSDSYRVHICDICGLIAIANLKKNSFECRRCKNKTQISQIRMPYAAKLLFQELMSMSI 1162
Query: 445 APRL 448
APR+
Sbjct: 1163 APRM 1166
>sp|Q42877|RPB2_SOLLC DNA-directed RNA polymerase II subunit RPB2 OS=Solanum lycopersicum
GN=RPB2 PE=2 SV=1
Length = 1191
Score = 552 bits (1423), Expect = e-156, Method: Compositional matrix adjust.
Identities = 272/486 (55%), Positives = 335/486 (68%), Gaps = 84/486 (17%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
MG+Y+TN+ RMDTLA+VLYYP KPLVTTR+
Sbjct: 740 MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA----------------------------- 770
Query: 61 SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 771 ----------------MEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFR 814
Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
S+FFRSY+D E K +E F +P+R + GMR+ YDKLDDDG+ PG RVSG+DV+I
Sbjct: 815 SLFFRSYRDEEKKMGTLVKEDFGRPDRASTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 874
Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
GKT P ++D+ +G R++++D ST LR+SETG+VDQV+LT N DG +F K+RVRSVR
Sbjct: 875 GKTT--PISQDDAQGQASRYTRKDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVR 932
Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
IPQIGDKF+SRHGQKGT G+ Y QE
Sbjct: 933 IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMG 992
Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
V+++ G+ GDATPF D V V IS L + GYQ+RG E M+NGHTGR+++A +FLGPTY
Sbjct: 993 KVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTY 1051
Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
YQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGGLRFGEMERDC I+HGAA FL+ERL
Sbjct: 1052 YQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERL 1111
Query: 385 FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
F+ SD YR+HVC CGLIAIAN++ N+FEC+GCKNKT I QV +PYA KLLFQELM+M I
Sbjct: 1112 FDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIPYACKLLFQELMAMAI 1171
Query: 445 APRLMV 450
APR++
Sbjct: 1172 APRMLT 1177
>sp|P38420|RPB2_ARATH DNA-directed RNA polymerase II subunit RPB2 OS=Arabidopsis thaliana
GN=RPB135 PE=2 SV=2
Length = 1188
Score = 552 bits (1422), Expect = e-156, Method: Compositional matrix adjust.
Identities = 274/486 (56%), Positives = 333/486 (68%), Gaps = 84/486 (17%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
MG+Y+TN+ RMDTLA+VLYYP KPLVTTR+
Sbjct: 741 MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRA----------------------------- 771
Query: 61 SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FR
Sbjct: 772 ----------------MEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFR 815
Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
S+FFRSY+D E K +E F +P+R + GMR+ YDKLDDDG+ PG RVSG+DV+I
Sbjct: 816 SLFFRSYRDEEKKMGTLVKEDFGRPDRGSTMGMRHGSYDKLDDDGLAPPGTRVSGEDVII 875
Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
GKT P ++DE +G + R+++RD S LR+SETG+VDQV+LT N DG +F K+RVRSVR
Sbjct: 876 GKTT--PISQDEAQGQSSRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVR 933
Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
IPQIGDKF+SRHGQKGT G+ Y QE
Sbjct: 934 IPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGVTPDIIVNPHAIPSRMTIGQLIECIMG 993
Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
V+++ G+ GDATPF D V V IS L + GYQ+RG E M+NGHTGR + A +FLGPTY
Sbjct: 994 KVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFERMYNGHTGRPLTAMIFLGPTY 1052
Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
YQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGGLRFGEMERDC I+HGAA FL+ERL
Sbjct: 1053 YQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERL 1112
Query: 385 FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
F+ SD YR+HVC CGLIAIAN++ N+FEC+GCKNKT I QV +PYA KLLFQELMSM I
Sbjct: 1113 FDQSDAYRVHVCEVCGLIAIANLKKNSFECRGCKNKTDIVQVYIPYACKLLFQELMSMAI 1172
Query: 445 APRLMV 450
APR++
Sbjct: 1173 APRMLT 1178
>sp|Q02061|RPB2_SCHPO DNA-directed RNA polymerase II subunit RPB2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpb2 PE=1 SV=2
Length = 1210
Score = 541 bits (1395), Expect = e-153, Method: Compositional matrix adjust.
Identities = 270/484 (55%), Positives = 335/484 (69%), Gaps = 82/484 (16%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
MGVY+TN+ VRMDT+A++LYYP KPL TTR
Sbjct: 767 MGVYLTNYQVRMDTMANILYYPQKPLATTR------------------------------ 796
Query: 61 SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
SMEYL+FRELPAG N+IVAILCY+GYNQEDS+I+N ++++RG FR
Sbjct: 797 ---------------SMEYLKFRELPAGQNAIVAILCYSGYNQEDSIIMNQASIDRGLFR 841
Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
S+F+R+Y D E K E+FE+P R T M++ YDKL+DDG+IAPG RVSG+D++I
Sbjct: 842 SIFYRTYTDQEKKIGMTVMEEFERPVRSTTLRMKHGTYDKLEDDGLIAPGTRVSGEDIII 901
Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
GKT +P + +EL T+ +KRD ST LR++E+GIVDQVM+T N +G KF K+R+RS R
Sbjct: 902 GKTAPIPLDHEELGQRTQLHAKRDVSTPLRSTESGIVDQVMVTTNQEGLKFVKVRMRSTR 961
Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
IPQIGDKFASRHGQKGT G+ YR E
Sbjct: 962 IPQIGDKFASRHGQKGTIGMTYRHEDMPFSAQGIVPDIIINPHAIPSRMTVAHLVECQLS 1021
Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
VS+ G GDATPF D V V+ +S LL+ +G+Q RG EVM++GHTGRK+ AQVFLGPTY
Sbjct: 1022 KVSALSGFEGDATPFTD-VTVEAVSKLLRSHGFQSRGFEVMYHGHTGRKLVAQVFLGPTY 1080
Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
YQRLKH+VDDKIH+RARGPVQIL RQP+EGR+RDGGLRFGEMERDCQISHG + LRERL
Sbjct: 1081 YQRLKHLVDDKIHARARGPVQILTRQPVEGRSRDGGLRFGEMERDCQISHGCSSVLRERL 1140
Query: 385 FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
F+ SD YR+ VC+ CGLIAIA+ + +++EC+ C+N+T+ SQV LPYAAKLLFQELMSMNI
Sbjct: 1141 FDCSDAYRVIVCDICGLIAIASYKKDSYECRSCQNRTRFSQVYLPYAAKLLFQELMSMNI 1200
Query: 445 APRL 448
APRL
Sbjct: 1201 APRL 1204
>sp|P08518|RPB2_YEAST DNA-directed RNA polymerase II subunit RPB2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPB2 PE=1 SV=2
Length = 1224
Score = 535 bits (1379), Expect = e-151, Method: Compositional matrix adjust.
Identities = 266/485 (54%), Positives = 328/485 (67%), Gaps = 83/485 (17%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
MGV++TN++VRMDT+A++LYYP KPL TTR
Sbjct: 778 MGVFLTNYNVRMDTMANILYYPQKPLGTTR------------------------------ 807
Query: 61 SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
+MEYL+FRELPAG N+IVAI CY+GYNQEDS+I+N S+++RG FR
Sbjct: 808 ---------------AMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFR 852
Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
S+FFRSY D E K E FEKP R M++ YDKLDDDG+IAPG+RVSG+DV+I
Sbjct: 853 SLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLIAPGVRVSGEDVII 912
Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
GKT + +E+EL T SKRD ST LR++E GIVDQV++T N DG KF K+RVR+ +
Sbjct: 913 GKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLVTTNQDGLKFVKVRVRTTK 972
Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
IPQIGDKFASRHGQKGT GI YR+E
Sbjct: 973 IPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLS 1032
Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
V++ G GDA+PF D + V+ IS LL+E+GYQ RG EVM+NGHTG+K+ AQ+F GPTY
Sbjct: 1033 KVAALSGNEGDASPFTD-ITVEGISKLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTY 1091
Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
YQRL+HMVDDKIH+RARGP+Q+L RQP+EGR+RDGGLRFGEMERDC I+HGAA FL+ERL
Sbjct: 1092 YQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAASFLKERL 1151
Query: 385 FEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMN 443
E SD +R+H+C CGL+ IA + +N FECKGC NK I Q+ +PYAAKLLFQELM+MN
Sbjct: 1152 MEASDAFRVHICGICGLMTVIAKLNHNQFECKGCDNKIDIYQIHIPYAAKLLFQELMAMN 1211
Query: 444 IAPRL 448
I PRL
Sbjct: 1212 ITPRL 1216
>sp|A5DHT2|RPB2_PICGU DNA-directed RNA polymerase II subunit RPB2 OS=Meyerozyma
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 /
JCM 1539 / NBRC 10279 / NRRL Y-324) GN=RPB2 PE=3 SV=3
Length = 1236
Score = 535 bits (1378), Expect = e-151, Method: Compositional matrix adjust.
Identities = 261/485 (53%), Positives = 333/485 (68%), Gaps = 83/485 (17%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
MGV++TN+ VRMDT+A++LYYP KPL TTR+
Sbjct: 787 MGVFLTNYSVRMDTMANILYYPQKPLATTRA----------------------------- 817
Query: 61 SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
ME+L+FRELPAG N+IVAI CY+GYNQEDS+I+N S+++RG FR
Sbjct: 818 ----------------MEHLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFR 861
Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
S+FFR+Y D E ++ E FEKP+R +++ Y+KLDDDG+IAPG+RVSG+D++I
Sbjct: 862 SLFFRTYMDLEKRQGMKALETFEKPSRSDTLRLKHGTYEKLDDDGLIAPGIRVSGEDIII 921
Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
GKT +P + +EL T+ +KRD ST LR++E+GIVDQV+LT N DG KF K+R+R+ +
Sbjct: 922 GKTTPIPPDTEELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKVRMRTTK 981
Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
+PQIGDKFASRHGQKGT G+ YR E
Sbjct: 982 VPQIGDKFASRHGQKGTVGVTYRHEDMPFTSQGIVPDLIINPHAIPSRMTVAHLIECLLS 1041
Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
VSS G GDA+PF D V + +S LL+E+GYQ RG EVM++GHTG+K+ AQVF GPTY
Sbjct: 1042 KVSSLSGLEGDASPFTD-VTAEAVSKLLREHGYQSRGFEVMYHGHTGKKLMAQVFFGPTY 1100
Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
YQRL+HMVDDKIH+RARGPVQ+L RQP+EGR+RDGGLRFGEMERDC I+HGAA FL+ERL
Sbjct: 1101 YQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAGFLKERL 1160
Query: 385 FEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMN 443
E SD +R+HVC CGL++ IAN++ N FEC+ CKNKT I Q+ +PYAAKLLFQELM+MN
Sbjct: 1161 MEASDAFRVHVCGVCGLMSVIANLKKNQFECRSCKNKTNIYQIHIPYAAKLLFQELMAMN 1220
Query: 444 IAPRL 448
I+PRL
Sbjct: 1221 ISPRL 1225
>sp|Q753Q4|RPB2_ASHGO DNA-directed RNA polymerase II subunit RPB2 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=RPB2 PE=3 SV=1
Length = 1222
Score = 535 bits (1377), Expect = e-151, Method: Compositional matrix adjust.
Identities = 266/486 (54%), Positives = 333/486 (68%), Gaps = 85/486 (17%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
MGV++TN++VRMDT+A++LYYP KPL TTR
Sbjct: 776 MGVFLTNYNVRMDTMANILYYPQKPLGTTR------------------------------ 805
Query: 61 SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
+MEYL+FRELPAG N+IVAI CY+GYNQEDS+I+N S+++ G FR
Sbjct: 806 ---------------AMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDSGLFR 850
Query: 121 SVFFRSYKDAESKRIG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
S+FFRSY D E KRIG E FEKP+R M++ Y+KLDDDG+IAPG+RVSGDD++
Sbjct: 851 SLFFRSYMDQE-KRIGMSITESFEKPHRTNTLRMKHGTYEKLDDDGLIAPGVRVSGDDII 909
Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
IGKT +P + +EL T SKRD ST LR++E GIVDQV++T N +G KF K+RVR+
Sbjct: 910 IGKTTPIPPDAEELGQRTAFHSKRDASTPLRSTENGIVDQVLITTNQEGLKFVKVRVRTT 969
Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
++PQIGDKFASRHGQKGT GI YR+E
Sbjct: 970 KVPQIGDKFASRHGQKGTIGITYRREDMPFTAEGVVPDLIINPHAIPSRMTVAHLIECLL 1029
Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
V++ G GDA+PF D + V IS LL+E+GYQ RG EVM+NGHTG+K+ AQ+F GPT
Sbjct: 1030 SKVAALSGNEGDASPFTD-ITVDGISKLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPT 1088
Query: 324 YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRER 383
YYQRL+HMVDDKIH+RARGP+Q+L RQP+EGR+RDGGLRFGEMERDC I+HGAA FL+ER
Sbjct: 1089 YYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAAFLKER 1148
Query: 384 LFEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSM 442
L E SD +R+H+C CGL+ +A +++N FEC+GCKNK I QV +PYAAKLLFQELM+M
Sbjct: 1149 LMEASDAFRVHICGICGLMTVVAKLKHNQFECRGCKNKIDIYQVHIPYAAKLLFQELMAM 1208
Query: 443 NIAPRL 448
NIAPRL
Sbjct: 1209 NIAPRL 1214
>sp|Q6FLD5|RPB2_CANGA DNA-directed RNA polymerase II subunit RPB2 OS=Candida glabrata
(strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL
Y-65) GN=RPB2 PE=3 SV=1
Length = 1223
Score = 531 bits (1368), Expect = e-150, Method: Compositional matrix adjust.
Identities = 262/485 (54%), Positives = 328/485 (67%), Gaps = 83/485 (17%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
MGV++TN++ RMDT+A++LYYP KPL TTR
Sbjct: 777 MGVFLTNYNFRMDTMANILYYPQKPLGTTR------------------------------ 806
Query: 61 SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
+MEYL+FRELPAG N+IVAI CY+GYNQEDS+I+N S+++RG FR
Sbjct: 807 ---------------AMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFR 851
Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
S+FFRSY D E K E FEKP R M++ YDKLD+DG+IAPG+RVSG+D++I
Sbjct: 852 SLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDEDGLIAPGVRVSGEDIII 911
Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
GKT + +E+EL T SKRD ST LR++E GIVDQV++T N DG KF K+RVR+ +
Sbjct: 912 GKTTPIAPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLITTNQDGLKFVKVRVRTTK 971
Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
+PQIGDKFASRHGQKGT GI YR+E
Sbjct: 972 VPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLS 1031
Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
V++ G GDA+PF D + V+ IS LL+E+GYQ RG EVM+NGHTG+K+ AQ+F GPTY
Sbjct: 1032 KVAALSGNEGDASPFTD-ITVEGISKLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTY 1090
Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
YQRL+HMVDDKIH+RARGP+Q+L RQP+EGR+RDGGLRFGEMERDC I+HGAA FL+ERL
Sbjct: 1091 YQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAAFLKERL 1150
Query: 385 FEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMN 443
E SD +R+H+C CGL++ IA + +N FECKGC NK I Q+ +PYAAKLLFQELM+MN
Sbjct: 1151 MEASDAFRVHICGICGLMSVIAKLNHNQFECKGCDNKIDIYQIHIPYAAKLLFQELMAMN 1210
Query: 444 IAPRL 448
I PRL
Sbjct: 1211 ITPRL 1215
>sp|Q8SR75|RPB2_ENCCU DNA-directed RNA polymerase II subunit RPB2 OS=Encephalitozoon
cuniculi (strain GB-M1) GN=RPB2 PE=3 SV=1
Length = 1141
Score = 487 bits (1253), Expect = e-137, Method: Compositional matrix adjust.
Identities = 253/484 (52%), Positives = 314/484 (64%), Gaps = 86/484 (17%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
MG+Y TNF +RMDTL+++L+YP KPLVTT+S
Sbjct: 704 MGIYATNFLLRMDTLSNILFYPQKPLVTTKS----------------------------- 734
Query: 61 SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
MEYLRF+ELP+G N++VAI CY+GYNQEDS+I+N SA++RG FR
Sbjct: 735 ----------------MEYLRFKELPSGQNALVAIACYSGYNQEDSIIMNQSAIDRGLFR 778
Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
S F+R+Y D ES E+F KP+R M+N Y+KLDDDG+I+PG RV+GDDV+I
Sbjct: 779 SFFYRTYTDQESMSRPGVNEEFCKPSRGAVLRMKNLNYNKLDDDGLISPGTRVTGDDVLI 838
Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
GK + + E + + +D ST +R +ETGIVD V++T N DGYKF K++VRS R
Sbjct: 839 GKITPILDPERSTK-EAPVYVYKDSSTAMRRTETGIVDTVIVT-NKDGYKFSKVKVRSGR 896
Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
IPQ+GDKFASRH QKGT GI RQE
Sbjct: 897 IPQMGDKFASRHAQKGTIGITLRQEDMPFTSEGIVPDIIINPHAIPSRMTIGHLIECLLG 956
Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
VS+ GE GDATPF+ V V IS+ L+ YG+Q RG EVM+NG TGRK+ AQ+F GPTY
Sbjct: 957 KVSAMSGEEGDATPFS-GVTVDGISSRLKSYGFQQRGLEVMYNGMTGRKLRAQMFFGPTY 1015
Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
YQRLKHMVDDKIH+RARGP+QIL RQP+EGR+RDGGLRFGEMERDC ISHGA+ FL+ERL
Sbjct: 1016 YQRLKHMVDDKIHARARGPLQILTRQPVEGRSRDGGLRFGEMERDCIISHGASAFLKERL 1075
Query: 385 FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
+VSD Y +VC+FCGL+A+ + N ECKGC N T +S V +PYA KLL QELM MNI
Sbjct: 1076 MDVSDAYSCYVCDFCGLLAMGGSKVN--ECKGCNNTTNVSMVEIPYAFKLLIQELMGMNI 1133
Query: 445 APRL 448
APR+
Sbjct: 1134 APRI 1137
>sp|P11513|RPOB_SULAC DNA-directed RNA polymerase subunit B OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=rpoB PE=3 SV=2
Length = 1126
Score = 340 bits (873), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 186/486 (38%), Positives = 266/486 (54%), Gaps = 82/486 (16%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
+G+Y +N+ +R DT AH+L+YP PLV TR +L GYN
Sbjct: 675 LGLYASNYQIRTDTRAHLLHYPQMPLVQTR-------------------MLGVIGYNDR- 714
Query: 61 SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
PAG N+I+AI+ YTGYN EDS+I+N S++ERG +R
Sbjct: 715 -------------------------PAGANAILAIMSYTGYNMEDSIIMNKSSIERGMYR 749
Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
S FFR Y E K G QE++ P Y L+D+G+++P + V G DV+I
Sbjct: 750 STFFRLYSTEEVKYPGGQEDKIVTPEAGVKGYKGKDYYRLLEDNGVVSPEVEVKGGDVLI 809
Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
GK ++ P E + + +KRD S R+ E GIVD V++T ++G K K+RVR +R
Sbjct: 810 GK-VSPPRFLQEFKELSPEQAKRDTSIVTRHGENGIVDLVLITETLEGNKLVKVRVRDLR 868
Query: 241 IPQIGDKFASRHGQKGTCGIQYRQ------------------------------------ 264
IP+IGDKFA+RHGQKG GI Q
Sbjct: 869 IPEIGDKFATRHGQKGVVGILIDQVDMPYTAKGIVPDIILNPHALPSRMTIGQIMEAIGG 928
Query: 265 EVSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
+ ++ G+ DATPF + +Q++ + + G+ EV+++G TG+K+ +++ G Y
Sbjct: 929 KYAALSGKPVDATPFLETPKLQEMQKEILKLGHLPDSTEVVYDGRTGQKLKSRILFGIVY 988
Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
YQ+L HMV DK+H+RARGPVQIL RQP EGRAR+GGLRFGEMERDC I G A +++RL
Sbjct: 989 YQKLHHMVADKMHARARGPVQILTRQPTEGRAREGGLRFGEMERDCLIGFGTAMLIKDRL 1048
Query: 385 FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
+ SD +++C+ CG + + N + C +K+ + V + YA KLL QELMSM I
Sbjct: 1049 LDNSDKAVVYICDQCGYVGWYDRSKNRYVCPVHGDKSVLHPVTVSYAFKLLIQELMSMVI 1108
Query: 445 APRLMV 450
+PRL++
Sbjct: 1109 SPRLIL 1114
>sp|P31814|RPOB_THECE DNA-directed RNA polymerase subunit B OS=Thermococcus celer GN=rpoB
PE=3 SV=1
Length = 1122
Score = 327 bits (837), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 195/490 (39%), Positives = 266/490 (54%), Gaps = 87/490 (17%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
+G+ NF +R+DT H+++YP PLV +R M
Sbjct: 678 LGLGWANFRIRVDTRGHLMHYPQVPLVNSRIM---------------------------- 709
Query: 61 SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
+ + F E PAG N +VA+L Y GYN ED++I+N +++ERG R
Sbjct: 710 -----------------KAVGFEERPAGQNFVVAVLSYAGYNMEDAIIMNKASIERGLAR 752
Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQG-MRNAIYDKLDDDGIIAPGLRVSGDDVV 179
S FFR+Y+ E + +G Q ++FE P+ T QG + Y LD+DGII P +V+G DV+
Sbjct: 753 STFFRTYEAEEKRYLGGQTDRFEIPD-PTIQGYLGERYYRHLDEDGIIFPESKVNGKDVL 811
Query: 180 IGKTITLPENEDELEGTTKRF--SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVR 237
+G+T + P +E G +R+ S +R SETG+VD+V++T DG K K+ R
Sbjct: 812 VGRT-SPPRFLEEQSGLGGIILQERRETSLTVRPSETGVVDKVIITETGDGTKLVKVTTR 870
Query: 238 SVRIPQIGDKFASRHGQKGTCGIQYRQE-------------------------------- 265
+RIP+ GDKFASRHGQKG G+ QE
Sbjct: 871 DLRIPEFGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSRMTVGQLIEA 930
Query: 266 ----VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLG 321
V+S KG D T F +K+ L+E G++ G EVM++G TGR++ A VF+G
Sbjct: 931 IGGKVASLKGRRVDGTAFI-GEPEEKLRKELEELGFKHSGREVMYDGITGRRLEADVFVG 989
Query: 322 PTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLR 381
YYQRL HMV DK+H+R+RGPVQ+L +QP EGRAR+GGLRFGEMERD I HGAA L
Sbjct: 990 VIYYQRLHHMVADKMHARSRGPVQVLTKQPTEGRAREGGLRFGEMERDVLIGHGAAMLLI 1049
Query: 382 ERLFEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMS 441
ERL E SD + VC CG IA+ + R C C + +IS+V + YA KLL EL +
Sbjct: 1050 ERLLEESDKTEVWVCENCGHIALEDKRRGKVYCPVCGEEERISKVEMSYAFKLLLDELKA 1109
Query: 442 MNIAPRLMVV 451
M I P L +V
Sbjct: 1110 MGIRPSLKLV 1119
>sp|O27124|RPOB1_METTH DNA-directed RNA polymerase subunit B' OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rpoB1 PE=3 SV=1
Length = 603
Score = 325 bits (832), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 192/489 (39%), Positives = 265/489 (54%), Gaps = 89/489 (18%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
+G+Y +N+ +R DT AH+L++P P+V TR I+ TGY+
Sbjct: 161 LGLYASNYDLRTDTRAHLLHHPQVPIVKTR-------------------IIDVTGYD--- 198
Query: 61 SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
E P+G N +VA++ Y GYN ED++ILN +++ERG R
Sbjct: 199 -----------------------ERPSGQNFVVAVMSYEGYNMEDALILNKASLERGLAR 235
Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
S FFRSY+ AE + G QE++FE P + + Y LD+DGII P VS DV+I
Sbjct: 236 SSFFRSYEAAERRYPGGQEDRFEIPEKGVRGYRSESDYRHLDEDGIINPEAEVSSGDVLI 295
Query: 181 GKTITLP---ENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVR 237
GKT + P E DE +R +R+ S +R+ E GIVD V+LT V+G + KIRVR
Sbjct: 296 GKT-SPPRFLEEIDEFGTVAER--RRETSVTVRHGEKGIVDAVLLTETVEGSRLAKIRVR 352
Query: 238 SVRIPQIGDKFASRHGQKGTCGIQYRQE-------------------------------- 265
R P++GDKFASRHGQKG G+ QE
Sbjct: 353 EQRQPELGDKFASRHGQKGVVGLIVSQEDMPFTEDGIVPDLIVNPHAIPSRMSVGQVLEM 412
Query: 266 ----VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLG 321
+ +G D TPF + I L+ G++ G E ++NG TG +I A++F+G
Sbjct: 413 LAGKAACMEGRRVDGTPFT-GEDEDDIKEALRANGFETAGVESLYNGITGERIEAEIFIG 471
Query: 322 PTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLR 381
YYQ+L HM DK+++R+RGPVQ+L RQP EGRAR+GGLRFGEMERDC I+HGAA L+
Sbjct: 472 VAYYQKLHHMTTDKVYARSRGPVQVLTRQPTEGRAREGGLRFGEMERDCLIAHGAALALK 531
Query: 382 ERLFEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMS 441
ERL + SD Y VC CG+IA+ + + C C++ V + YA KLL EL S
Sbjct: 532 ERLLDESDKYEALVCADCGMIAVYDKIRDKKYCPICEDSESFP-VEVSYAFKLLLDELKS 590
Query: 442 MNIAPRLMV 450
+ I P+L++
Sbjct: 591 LCIFPKLIL 599
>sp|P09845|RPOB1_METTW DNA-directed RNA polymerase subunit B' OS=Methanothermobacter
thermoautotrophicus (strain Winter) GN=rpoB1 PE=3 SV=2
Length = 604
Score = 318 bits (816), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 193/490 (39%), Positives = 266/490 (54%), Gaps = 90/490 (18%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
+G+Y +N+++R DT AH+L++P P+V TR I+ TGY+
Sbjct: 161 LGLYASNYNLRTDTRAHLLHHPQVPIVKTR-------------------IIDVTGYD--- 198
Query: 61 SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
E P+G N +VA++ Y GYN ED++ILN +++ERG R
Sbjct: 199 -----------------------ERPSGQNFVVAVMSYEGYNMEDALILNKASLERGLAR 235
Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNA-IYDKLDDDGIIAPGLRVSGDDVV 179
S FFRSY+ E + G QE++FE P + +G R+ Y LD+DGII P VS DV+
Sbjct: 236 SSFFRSYEATERRYPGGQEDRFEIPEK-GVRGYRSERDYRHLDEDGIINPETEVSSGDVL 294
Query: 180 IGKTIT--LPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVR 237
IGKT E DE +R +R+ S +R+ E GIVD V+LT V+G + KIRVR
Sbjct: 295 IGKTSPPRFLEEIDEFGTVAER--RRETSVTVRHGEEGIVDAVLLTETVEGSRLAKIRVR 352
Query: 238 SVRIPQ-IGDKFASRHGQKGTCGIQYRQE------------------------------- 265
R P+ IGDKFASRHGQKG G+ QE
Sbjct: 353 EQRQPEFIGDKFASRHGQKGVVGLIVSQEDMPFTEDGVVPDLIVNPHAIPSRMSVGQVLE 412
Query: 266 -----VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFL 320
+ +G D TPF + + L+ G++ G E ++NG TG +I A++F+
Sbjct: 413 MLAGKAACMEGRRVDGTPFT-GEEEKDLKEALKANGFESAGVETLYNGITGERIEAEIFI 471
Query: 321 GPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFL 380
G YYQ+L HM D+I++R+RGPVQ+L RQP EGRAR+GGLRFGEMERDC I+HGAA L
Sbjct: 472 GVAYYQKLHHMTTDRIYARSRGPVQVLTRQPTEGRAREGGLRFGEMERDCLIAHGAALAL 531
Query: 381 RERLFEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELM 440
+ERL + SD Y VC CG+IAI + + C C++ V + YA KLL EL
Sbjct: 532 KERLLDESDKYEALVCAECGMIAIYDKIRDKKYCPICEDSESFP-VEISYAFKLLLDELK 590
Query: 441 SMNIAPRLMV 450
S+ I P+L++
Sbjct: 591 SLCIFPKLVL 600
>sp|O28392|RPOB1_ARCFU DNA-directed RNA polymerase subunit B' OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=rpoB1 PE=4 SV=1
Length = 604
Score = 318 bits (814), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 187/487 (38%), Positives = 258/487 (52%), Gaps = 84/487 (17%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
+G+ +N R DT H++ +P P+VTT +
Sbjct: 161 LGIPYSNLAWRTDTRGHLMQHPQVPIVTTDTQ---------------------------- 192
Query: 61 SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
VE ++F E PAG N +VA+L Y GYN ED++I+N +VERG R
Sbjct: 193 --------VE---------IKFDERPAGQNFVVAVLSYEGYNIEDALIMNKGSVERGLGR 235
Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNA-IYDKLDDDGIIAPGLRVSGDDVV 179
S F+R+Y+ E + G QE++FE P G R A Y LD+DG+I P V DDV+
Sbjct: 236 SFFYRTYESEEMRYPGGQEDKFEIPG-ADISGFRGAEAYAHLDEDGLIFPETEVGPDDVL 294
Query: 180 IGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
IG+T E+ E +R+ S +R++E G+VD V L + G K K+RVR +
Sbjct: 295 IGRTSPPRFLEEPTELGISPQKRRETSVTMRSNEKGVVDAVFLMQSEGGSKLAKVRVRDL 354
Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
RIP++GDKFASRHGQKG G+ +E
Sbjct: 355 RIPELGDKFASRHGQKGVVGLLVPEEDMPFTESGIVPDLIINPHAIPSRMTVGHVLEMIG 414
Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
V S +G D + F+ + + + L++YG+ G EVM++G TGR+ +F+G
Sbjct: 415 GKVGSLEGRRVDGSLFH-GESEEDLRATLKKYGFSHTGKEVMYDGITGRRYLVDIFVGVI 473
Query: 324 YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRER 383
YYQ+L HMV KIH+R+RGPVQ+L RQP EGRAR GGLRFGEMERD I HGAA L++R
Sbjct: 474 YYQKLYHMVSSKIHARSRGPVQVLTRQPTEGRARKGGLRFGEMERDVLIGHGAALLLKDR 533
Query: 384 LFEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMN 443
L E SD + VC CG +A + R NT C C +++ I +V + YA KLL EL SM
Sbjct: 534 LLEESDKVEVWVCGNCGHVATYDYRRNTAYCHICDDESNIHKVEMSYAFKLLLDELKSMM 593
Query: 444 IAPRLMV 450
IAPR+++
Sbjct: 594 IAPRIIL 600
>sp|Q60181|RPOB1_METJA DNA-directed RNA polymerase subunit B' OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=rpoB1 PE=3 SV=1
Length = 636
Score = 312 bits (800), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 183/493 (37%), Positives = 258/493 (52%), Gaps = 90/493 (18%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
+G+ ++N R+DT H L+YP P+V T+ E L
Sbjct: 166 LGIPMSNIKWRLDTRGHYLHYPQVPIVRTKHQEILG------------------------ 201
Query: 61 SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
F + PAG N +VAI+ Y GYN ED+++ N SA++RG R
Sbjct: 202 ---------------------FDKRPAGQNFVVAIMSYEGYNMEDAIVFNKSAIDRGLGR 240
Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
S FFR+Y E + G Q ++FE P++ Y L++DGI+A V G DV++
Sbjct: 241 STFFRTYDACERRYPGGQMDRFEIPDKGVRGYRSEECYRYLEEDGIVAVESHVKGGDVIV 300
Query: 181 GKTITLPENEDELEGTTK-RFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV 239
GKT + P +E E T + + +RD S +R+ E G +D+V+LT +G + K++VR +
Sbjct: 301 GKT-SPPRFLEEHEITIQVKPQRRDSSVVVRHGEEGYIDKVILTETKEGNRLVKVKVRDL 359
Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQE---------------------------------- 265
RIP++GDKFASRHGQKG G+ QE
Sbjct: 360 RIPELGDKFASRHGQKGVMGLTVPQEDLPFTESGIVPDIIINPHAIPSRMTVGQLLEMLG 419
Query: 266 --VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
V + +G D T F+ + L+ G++ G EVM++G TG+K ++++G
Sbjct: 420 GKVGALEGRRIDGTIFSGEKE-WDLRKALEALGFKHHGKEVMYDGKTGKKFEVEIYIGIA 478
Query: 324 YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRER 383
YYQ+L H+V KIH+R+RGPVQ+L RQP EGRAR+GGLRFGEMERD I HGAA L+ER
Sbjct: 479 YYQKLHHLVAGKIHARSRGPVQVLTRQPTEGRAREGGLRFGEMERDVLIGHGAAMLLKER 538
Query: 384 LFEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCK------NKTQISQVRLPYAAKLLFQ 437
L + SDPY I +C+ CG AI + + C C + +I VR+PYA KLL
Sbjct: 539 LMDESDPYDICICSKCGDFAILDYKRGLKYCPICGEIENLYSSKKIPFVRIPYAFKLLLD 598
Query: 438 ELMSMNIAPRLMV 450
EL SM I PR+ V
Sbjct: 599 ELKSMCILPRIKV 611
>sp|P0CX03|RPOB1_HALSA DNA-directed RNA polymerase subunit B' OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=rpoB1 PE=3
SV=1
Length = 608
Score = 311 bits (797), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 177/487 (36%), Positives = 248/487 (50%), Gaps = 87/487 (17%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
+G+ N+ +R DT H+L+YP K +V T++ E + GY+
Sbjct: 164 LGLPAANYRIRPDTRQHLLHYPQKAMVNTQTTEQI-------------------GYD--- 201
Query: 61 SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
+ PAG N +VA++ Y G+N ED++++N +VER R
Sbjct: 202 -----------------------DRPAGQNFVVAVMSYEGFNIEDALVMNKGSVERALSR 238
Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
S FFR+Y+ E + G QE++FE P Y LDDDG++ P +V V++
Sbjct: 239 SHFFRTYEGEERRYPGGQEDRFEIPGDDVRGARGEDAYTHLDDDGLVNPETKVDDSSVLL 298
Query: 181 GKTIT---LPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVR 237
GKT L E ED G +R+ S +R+ E G+VD V L DG K K+ VR
Sbjct: 299 GKTSPPRFLEEPEDM--GGLSPQKRRETSVTMRSGEDGVVDTVTLMEGEDGSKLAKVSVR 356
Query: 238 SVRIPQIGDKFASRHGQKGTCGIQYRQE-------------------------------- 265
RIP++GDKFASRHGQKG G QE
Sbjct: 357 DERIPELGDKFASRHGQKGVVGHLAPQEDMPFTQEGVVPDLVLNPHALPSRMTVGHVLEM 416
Query: 266 ----VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLG 321
S G D TPF +I L++ G++ G EVM++G +G KI A++F+G
Sbjct: 417 LGGKAGSLDGRSVDGTPFT-GEGEDEIRGTLEDRGFKSSGKEVMYSGVSGEKIEAEIFVG 475
Query: 322 PTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLR 381
+Y +L HMV +K+H+R++GPVQ+L RQP EGRAR+GGLR GEMERD I HGAA L+
Sbjct: 476 TIFYHKLYHMVSNKLHARSKGPVQVLTRQPTEGRAREGGLRVGEMERDTVIGHGAAMVLK 535
Query: 382 ERLFEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMS 441
ERL + SD IHVC CG+ A+ N C C+ +T + + + YA KLL E+ +
Sbjct: 536 ERLLDSSDREEIHVCGNCGMTAVENYEQRRVYCPNCEEETDVHSIEMSYAFKLLLDEMKA 595
Query: 442 MNIAPRL 448
+ IAPRL
Sbjct: 596 LGIAPRL 602
>sp|B0R8D5|RPOB1_HALS3 DNA-directed RNA polymerase subunit B' OS=Halobacterium salinarum
(strain ATCC 29341 / DSM 671 / R1) GN=rpoB1 PE=1 SV=1
Length = 608
Score = 311 bits (797), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 177/487 (36%), Positives = 248/487 (50%), Gaps = 87/487 (17%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
+G+ N+ +R DT H+L+YP K +V T++ E + GY+
Sbjct: 164 LGLPAANYRIRPDTRQHLLHYPQKAMVNTQTTEQI-------------------GYD--- 201
Query: 61 SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
+ PAG N +VA++ Y G+N ED++++N +VER R
Sbjct: 202 -----------------------DRPAGQNFVVAVMSYEGFNIEDALVMNKGSVERALSR 238
Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
S FFR+Y+ E + G QE++FE P Y LDDDG++ P +V V++
Sbjct: 239 SHFFRTYEGEERRYPGGQEDRFEIPGDDVRGARGEDAYTHLDDDGLVNPETKVDDSSVLL 298
Query: 181 GKTIT---LPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVR 237
GKT L E ED G +R+ S +R+ E G+VD V L DG K K+ VR
Sbjct: 299 GKTSPPRFLEEPEDM--GGLSPQKRRETSVTMRSGEDGVVDTVTLMEGEDGSKLAKVSVR 356
Query: 238 SVRIPQIGDKFASRHGQKGTCGIQYRQE-------------------------------- 265
RIP++GDKFASRHGQKG G QE
Sbjct: 357 DERIPELGDKFASRHGQKGVVGHLAPQEDMPFTQEGVVPDLVLNPHALPSRMTVGHVLEM 416
Query: 266 ----VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLG 321
S G D TPF +I L++ G++ G EVM++G +G KI A++F+G
Sbjct: 417 LGGKAGSLDGRSVDGTPFT-GEGEDEIRGTLEDRGFKSSGKEVMYSGVSGEKIEAEIFVG 475
Query: 322 PTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLR 381
+Y +L HMV +K+H+R++GPVQ+L RQP EGRAR+GGLR GEMERD I HGAA L+
Sbjct: 476 TIFYHKLYHMVSNKLHARSKGPVQVLTRQPTEGRAREGGLRVGEMERDTVIGHGAAMVLK 535
Query: 382 ERLFEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMS 441
ERL + SD IHVC CG+ A+ N C C+ +T + + + YA KLL E+ +
Sbjct: 536 ERLLDSSDREEIHVCGNCGMTAVENYEQRRVYCPNCEEETDVHSIEMSYAFKLLLDEMKA 595
Query: 442 MNIAPRL 448
+ IAPRL
Sbjct: 596 LGIAPRL 602
>sp|Q03587|RPOB_THEAC DNA-directed RNA polymerase subunit B OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=rpoB PE=3 SV=1
Length = 1195
Score = 310 bits (795), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 186/491 (37%), Positives = 252/491 (51%), Gaps = 91/491 (18%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
+G +N +R DT H+L+YP PLV TR
Sbjct: 751 LGFAQSNVRIRPDTRGHLLHYPQVPLVRTRV----------------------------- 781
Query: 61 SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
M+Y+ + PAG N +VA+L Y GYN +D++++N +A+ERG R
Sbjct: 782 ----------------MDYIHYDRRPAGQNFVVAVLSYEGYNIQDALVINKAAIERGLGR 825
Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
S FFR+Y E + G QE++FE P Y LDD GII P V G DV+I
Sbjct: 826 STFFRTYSAEERRYPGGQEDKFEIPTHDIIGARAEEYYKNLDDSGIIFPEAYVEGSDVLI 885
Query: 181 GKTIT---LPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVR 237
GKT L E E+ L G +R R+ S +R +E+G VD V LT++ + KI+VR
Sbjct: 886 GKTSPPRFLEEGEERL-GPQRR---RESSVTMRPNESGYVDNVFLTVSESNSRVVKIKVR 941
Query: 238 SVRIPQIGDKFASRHGQKGTCGIQYRQE-------------------------------- 265
S RIP++GDKFASRHGQKG G+ QE
Sbjct: 942 SERIPELGDKFASRHGQKGVVGLVVPQEDMPFTEDGIIPDLIFNPHSIPSRMTVGHILEM 1001
Query: 266 ----VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLG 321
++S G D T F+ + + L +YG++ EVM++G TGR+ A +F+G
Sbjct: 1002 IGGKIASRTGRFIDGTIFSGEPE-KSLRDALVKYGFRKSSTEVMYDGITGRRFKADIFVG 1060
Query: 322 PTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLR 381
YYQ+L HMV K H+R+RGPVQIL RQP EGR+R GGLRFGEMERD I+HGAA ++
Sbjct: 1061 VIYYQKLHHMVAGKFHARSRGPVQILTRQPTEGRSRQGGLRFGEMERDTLIAHGAAMVIK 1120
Query: 382 ERLFEVSDPYRIHVCN--FCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQEL 439
+RL + SD ++VC CG IAI + R T C C N I + YA KL+ EL
Sbjct: 1121 DRLLDQSDGTVLYVCGNPSCGHIAIYDRRKGTLRCPVCGNTGNIYPIETSYAFKLMRDEL 1180
Query: 440 MSMNIAPRLMV 450
+S+ + RLM+
Sbjct: 1181 ISLGVVMRLML 1191
>sp|Q7T6X7|RPO2_MIMIV DNA-directed RNA polymerase subunit 2 OS=Acanthamoeba polyphaga
mimivirus GN=RPO2 PE=1 SV=2
Length = 1196
Score = 310 bits (794), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 189/484 (39%), Positives = 259/484 (53%), Gaps = 94/484 (19%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
MG+YI+++ R D ++++LY+P PLVT+R+ +Y TG +
Sbjct: 752 MGLYISDYRERTD-ISYILYHPQIPLVTSRASKY-------------------TGTHI-- 789
Query: 61 SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGY-NQEDSVILNASAVERGYF 119
PAG NSIVAI YTG NQEDS+++N SA+++GY
Sbjct: 790 ------------------------FPAGENSIVAIASYTGLMNQEDSLVINDSAIQKGYM 825
Query: 120 RSVFFRSYKDAESKR-IGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDV 178
R+ + Y + K Q F KP+R +R+A YDKL ++G + DV
Sbjct: 826 RAQALKKYMEIIKKNPASSQTSIFMKPDRNKVDNLRDANYDKLSEEGYAKVETVIRDGDV 885
Query: 179 VIGKTITLP-ENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVR 237
VIG P EDE K++ +D S+ ++ G VD+V+ +N DGY K+R+R
Sbjct: 886 VIGVVNPKPTAREDE-----KQY--KDASSIYKSLIPGAVDKVITEVNNDGYPIIKMRIR 938
Query: 238 SVRIPQIGDKFASRHGQKGTCGIQYRQ--------------------------------- 264
S RIP +GDKF+SR GQKGT G + +
Sbjct: 939 SERIPNVGDKFSSRAGQKGTIGYKAHRADMLFSKSGLIPDIIINPNCMPKRMTIGQLIEC 998
Query: 265 ---EVSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLG 321
++ + KG GDATPF +V++ I+ L GY+ GNE M+NG G+K+ ++F+G
Sbjct: 999 LLGKLCAVKGVYGDATPFT-SVDLNAINDELVAAGYEEWGNETMYNGMNGKKLPVKIFIG 1057
Query: 322 PTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFG-EMERDCQISHGAAQFL 380
PTYYQRLK MV DK HSRARGP Q+L RQ EGR+RDGGLR G EMERD +HG AQFL
Sbjct: 1058 PTYYQRLKQMVGDKAHSRARGPTQLLTRQAPEGRSRDGGLRIGFEMERDALCAHGVAQFL 1117
Query: 381 RERLFEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELM 440
+E+ + SD Y HVC+ CG A + C GC+N T IS++ +PYA KLL QEL
Sbjct: 1118 KEKTVDNSDIYTCHVCDSCGQFAHKVPEKKYYTCTGCRNTTSISKIVIPYAFKLLLQELA 1177
Query: 441 SMNI 444
S+NI
Sbjct: 1178 SINI 1181
>sp|P41557|RPOB1_METVS DNA-directed RNA polymerase subunit B' OS=Methanococcus vannielii
(strain SB / ATCC 35089 / DSM 1224) GN=rpoB1 PE=3 SV=2
Length = 611
Score = 305 bits (780), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 181/493 (36%), Positives = 254/493 (51%), Gaps = 94/493 (19%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
+G+ + N RMDT H+L+YP PLV T+ E L
Sbjct: 162 LGIPMANIKWRMDTRGHLLHYPQVPLVRTKHQEILG------------------------ 197
Query: 61 SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
F + PAG N +VA++ Y GYN ED+ ++N +++ERG R
Sbjct: 198 ---------------------FDKRPAGQNFVVAVMSYEGYNMEDAFVINKASLERGLGR 236
Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
S FFRSY+ E + G Q ++FE P + Y L DDG+I V DV++
Sbjct: 237 STFFRSYESFEKRYPGGQLDKFEVPEKGVRGYRAEEAYRNLGDDGLIDLESEVRSGDVIL 296
Query: 181 GKTIT---LPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVR 237
GKT L E E L+ ++R RD S +R+ E G+VD V+L+ +G + K+RVR
Sbjct: 297 GKTSPPRFLEEQEITLQTKSQR---RDTSVTIRHGEEGVVDLVILSETKEGNRLGKVRVR 353
Query: 238 SVRIPQIGDKFASRHGQKGTCGIQYRQE-----------------------------VSS 268
+R+P+ GDKFASRHGQKG G+ QE +
Sbjct: 354 DLRVPEFGDKFASRHGQKGVIGLVVPQEDLPFTEDGVIPDLIINPHAIPSRMTIGQVLEM 413
Query: 269 NKGEIG-------DATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLG 321
G++G D T F+ + L+ YG+ G E M++G TGRK+ ++F+G
Sbjct: 414 IGGKVGSLECRRVDGTIFS-GEGEWALRHALENYGFTHSGKETMYDGKTGRKLECEIFVG 472
Query: 322 PTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLR 381
YYQ+L H+V KIH+R+RGP+Q+L RQP EGRAR+GGLRFGEMERD ++HGAA L+
Sbjct: 473 VAYYQKLHHLVAGKIHARSRGPIQVLTRQPTEGRAREGGLRFGEMERDVLVAHGAALLLK 532
Query: 382 ERLFEVSDPYRIHVCNFCGLIAIANMRNNTFECKGC------KNKTQISQVRLPYAAKLL 435
ERL + SDP+ +VC CG IAI + + C C ++ +I V++ YA KLL
Sbjct: 533 ERLLDESDPHEDYVCAKCGEIAIFDYKRGMKFCPVCGESEDIQDNRKIPPVKIAYAFKLL 592
Query: 436 FQELMSMNIAPRL 448
EL SM I P+L
Sbjct: 593 LDELKSMGIDPKL 605
>sp|Q10233|RPC2_SCHPO DNA-directed RNA polymerase III subunit RPC2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpc2 PE=2 SV=1
Length = 1165
Score = 282 bits (722), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 165/479 (34%), Positives = 244/479 (50%), Gaps = 91/479 (18%)
Query: 11 RMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVE 70
R+DTL +++ YP +P+V T+++E + + +LPAG N+ VAI+ Y+GY+ ED+++LN S+++
Sbjct: 733 RIDTLLYLMVYPQQPMVKTKTIELIGYDKLPAGQNATVAIMSYSGYDIEDALVLNKSSID 792
Query: 71 RGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFRSYKDA 130
RG+ R + + SV R Y +
Sbjct: 793 RGFGRCQVFHK--------------------------------------HSVIVRKYPNG 814
Query: 131 ESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENE 190
RIGD P R G + ++DDG+ G RV + + K +
Sbjct: 815 THDRIGD-------PQRDPETGEVVWKHGVVEDDGLAGVGCRVQPGQIYVNKQTPTNALD 867
Query: 191 DELE-GTTKRFSKRDGSTFL--RNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDK 247
+ + G T+ +T + + E G +D+VMLT K+ +R R P++GDK
Sbjct: 868 NSITLGHTQTVESGYKATPMTYKAPEPGYIDKVMLTTTDSDQTLIKVLMRQTRRPELGDK 927
Query: 248 FASRHGQKGTCGIQYRQE------------------------------------VSSNKG 271
F+SRHGQKG CG+ +QE V +G
Sbjct: 928 FSSRHGQKGVCGVIVQQEDMPFNDQGICPDIIMNPHGFPSRMTVGKMIELLSGKVGVLRG 987
Query: 272 EIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQRLKHM 331
+ T F V+ S +L E+GY G +++ +G TG + A +F+GP YYQ+LKHM
Sbjct: 988 TLEYGTCFG-GTKVEDASRILVEHGYNYSGKDMLTSGITGETLEAYIFMGPIYYQKLKHM 1046
Query: 332 VDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPY 391
V DK+H+RARGP +L RQP EGR+RDGGLR GEMERDC I++GA+Q L ERL SD
Sbjct: 1047 VMDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIAYGASQLLLERLMISSDAC 1106
Query: 392 RIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMV 450
+ VC CGL+ C C++ ++ ++ +PYAAKLLFQEL+SMNI PRL +
Sbjct: 1107 DVDVCGQCGLLGYKGW------CNSCQSTREVVKMTIPYAAKLLFQELLSMNIVPRLAL 1159
>sp|P25167|RPC2_DROME DNA-directed RNA polymerase III subunit RPC2 OS=Drosophila
melanogaster GN=RpIII128 PE=2 SV=2
Length = 1137
Score = 275 bits (703), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 159/489 (32%), Positives = 247/489 (50%), Gaps = 94/489 (19%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
MG+ N R+D+L + L YPH P+V ++++E F +LPAG N+ VA++ Y+GY+ ED
Sbjct: 701 MGMIGYNQKNRIDSLMYNLVYPHAPMVKSKTIELTNFDKLPAGQNATVAVMSYSGYDIED 760
Query: 61 SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
++ILN ++++RGY R + Y N+ + Y
Sbjct: 761 ALILNKASIDRGYGRCLVY-----------------------------KNSKCTVKRYAN 791
Query: 121 SVFFR---SYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDD 177
F R KDA + ++ + +D LD DGI+APG +V
Sbjct: 792 QTFDRIMGPMKDALTNKVIFK-------------------HDVLDTDGIVAPGEQVQNKQ 832
Query: 178 VVIGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVR 237
++I K + + + L+G + + + E +++VM++ N + KI +R
Sbjct: 833 IMINKEMPAVTSMNPLQGQSAQVPYTAVPISYKGPEPSYIERVMVSANAEEDFLIKILLR 892
Query: 238 SVRIPQIGDKFASRHGQKGTCGIQYRQE-------------------------------- 265
RIP+IGDKF+SRHGQKG G+ QE
Sbjct: 893 QTRIPEIGDKFSSRHGQKGVTGLIVEQEDMPFNDFGICPDMIMNPHGFPSRMTVGKTLEL 952
Query: 266 ----VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLG 321
+G+ T F + V+ I L+ +G+ G + ++G TG + A ++ G
Sbjct: 953 LGGKAGLLEGKFHYGTAFGGS-KVEDIQAELERHGFNYVGKDFFYSGITGTPLEAYIYSG 1011
Query: 322 PTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLR 381
P YYQ+LKHMV DK+H+RARGP +L RQP +GR+R+GGLR GEMERDC IS+GA+ +
Sbjct: 1012 PVYYQKLKHMVQDKMHARARGPKAVLTRQPTQGRSREGGLRLGEMERDCLISYGASMLIM 1071
Query: 382 ERLFEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMS 441
ERL SD + + VC CG +A + C C++ +S++ +PYA KLLFQEL S
Sbjct: 1072 ERLMISSDAFEVDVCRTCGRMAYCSW------CHFCQSSANVSKISMPYACKLLFQELTS 1125
Query: 442 MNIAPRLMV 450
MN+ P++++
Sbjct: 1126 MNVVPKMIL 1134
>sp|Q197F1|RPB2_IIV3 Probable DNA-directed RNA polymerase II subunit RPB2 homolog
OS=Invertebrate iridescent virus 3 GN=IIV3-009R PE=3 SV=1
Length = 1140
Score = 268 bits (685), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 169/485 (34%), Positives = 251/485 (51%), Gaps = 103/485 (21%)
Query: 4 YITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVI 63
++ +++ +T++H L YP KPLVTT E YNQ
Sbjct: 717 FVPCHNLKTETVSHTLNYPQKPLVTTSFAE----------------------YNQ----- 749
Query: 64 LNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVF 123
E P GIN+IVAI CYTGYNQEDS+ILN S+++RG F ++
Sbjct: 750 ------------------LNEYPNGINAIVAIACYTGYNQEDSIILNKSSIDRGLFGTIT 791
Query: 124 FRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKT 183
+ ++ A+ K+ G EE+ E P+ +R+ Y + DGI+ RV DV+I K
Sbjct: 792 YNTFT-AQEKKNGIIEERIEIPSNAI--KIRDCNYGLVGPDGIVRLRQRVKKGDVLICKV 848
Query: 184 ITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQ 243
+N+DE D S +++ E G VD+++ + +DG + K+ + +R P+
Sbjct: 849 TIKNKNQDE--------KLVDSSVIVQHGEEGYVDRIVDNV-IDGCRIVKVVIGQMRTPE 899
Query: 244 IGDKFASRHGQKGTCGIQYRQE-----------------------------VSSNKGEIG 274
IGDKF S QKGTCG+ + QE +S+ G++
Sbjct: 900 IGDKFCSGMAQKGTCGMIFPQEDMPFTASGMTPDIIINPNCIPSRMTINQIISTVMGKLY 959
Query: 275 DATP---FNDAVNVQKIS-TLLQEYGYQLR-------GNEVMFNGHTGRKINAQVFLGPT 323
P F + + Q+ S T+L+E + L+ G+EVM++G TG +I + +F+GPT
Sbjct: 960 TVNPNPRFRNGNSFQENSNTILKELCHHLKLNGFDPSGSEVMYSGFTGERIQSTIFMGPT 1019
Query: 324 YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRER 383
YY RLKHMV DK+H+R+ G V L RQP GR++ GGLRFGEME+DC + HGA QFL ER
Sbjct: 1020 YYHRLKHMVKDKMHARSHGQVTTLHRQPNCGRSQGGGLRFGEMEKDCILVHGATQFLNER 1079
Query: 384 LFEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMN 443
+F SDP++I VC CG+ M + + +C C + + +PY+ K L QEL M
Sbjct: 1080 MFLNSDPFQIDVCKDCGM-----MSSTSKKCHHC-GSINVKRCNIPYSCKNLLQELNGMG 1133
Query: 444 IAPRL 448
I ++
Sbjct: 1134 IKTKI 1138
>sp|P22276|RPC2_YEAST DNA-directed RNA polymerase III subunit RPC2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RET1 PE=1 SV=2
Length = 1149
Score = 265 bits (678), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 158/486 (32%), Positives = 241/486 (49%), Gaps = 92/486 (18%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
+G N R+DTL +++ YP +P+V T+++
Sbjct: 710 IGAIAYNQFKRIDTLLYLMTYPQQPMVKTKTI---------------------------- 741
Query: 61 SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
E + + +LPAG N+ VA++ Y+GY+ ED+++LN S+++RG+ R
Sbjct: 742 -----------------ELIDYDKLPAGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGR 784
Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
R KR + + R G + L DG+ G++V + I
Sbjct: 785 CETRRKTTTV-LKRYANHTQDIIGGMRVDENGDPIWQHQSLGPDGLGEVGMKVQSGQIYI 843
Query: 181 GKTITLPENEDELEGTTK---RFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVR 237
K++ P N + + R+ R E +DQVM++++ + K+ +R
Sbjct: 844 NKSV--PTNSADAPNPNNVNVQTQYREAPVIYRGPEPSHIDQVMMSVSDNDQALIKVLLR 901
Query: 238 SVRIPQIGDKFASRHGQKGTCGIQYRQE-------------------------------- 265
R P++GDKF+SRHGQKG CGI +QE
Sbjct: 902 QNRRPELGDKFSSRHGQKGVCGIIVKQEDMPFNDQGIVPDIIMNPHGFPSRMTVGKMIEL 961
Query: 266 VSSNKGEIGDATPFNDAV---NVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGP 322
+S G + + ++ +S +L + G+ G +++++G TG + A +F GP
Sbjct: 962 ISGKAGVLNGTLEYGTCFGGSKLEDMSKILVDQGFNYSGKDMLYSGITGECLQAYIFFGP 1021
Query: 323 TYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRE 382
YYQ+LKHMV DK+H+RARGP +L RQP EGR+RDGGLR GEMERDC I++GA+Q L E
Sbjct: 1022 IYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLE 1081
Query: 383 RLFEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSM 442
RL SD + + VC+ CGL+ + C CK+ I ++ +PYAAKLLFQEL+SM
Sbjct: 1082 RLMISSDAFEVDVCDKCGLMGYSGW------CTTCKSAENIIKMTIPYAAKLLFQELLSM 1135
Query: 443 NIAPRL 448
NIAPRL
Sbjct: 1136 NIAPRL 1141
>sp|Q9NW08|RPC2_HUMAN DNA-directed RNA polymerase III subunit RPC2 OS=Homo sapiens
GN=POLR3B PE=1 SV=2
Length = 1133
Score = 265 bits (678), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 160/487 (32%), Positives = 243/487 (49%), Gaps = 93/487 (19%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
MG N R+DTL ++L YP KP+V T+++
Sbjct: 694 MGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTI---------------------------- 725
Query: 61 SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
E + F +LPAG N+ VA++ Y+GY+ ED+++LN ++++RG+ R
Sbjct: 726 -----------------ELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGR 768
Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIY--DKLDDDGIIAPGLRVSGDDV 178
+ +++ K + ++ P R I+ + LD DGI +PG +V V
Sbjct: 769 CLVYKNAKCTLKRYTNQTFDKVMGPMLDA--ATRKPIWRHEILDADGICSPGEKVENKQV 826
Query: 179 VIGKTI-TLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVR 237
++ K++ T+ + E ++ +D + + +++VM++ N + K+ +R
Sbjct: 827 LVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLR 886
Query: 238 SVRIPQIGDKFASRHGQKGTCGIQYRQE-------------------------------V 266
R P+IGDKF+SRHGQKG CG+ QE +
Sbjct: 887 QTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIEL 946
Query: 267 SSNKGEIGDA-----TPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLG 321
+ K + D T F + V+ + L +GY G + + +G TG + A ++ G
Sbjct: 947 LAGKAGVLDGRFHYGTAFGGS-KVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFG 1005
Query: 322 PTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLR 381
P YYQ+LKHMV DK+H+RARGP +L RQP EGR+RDGGLR GEMERDC I +GA+ L
Sbjct: 1006 PVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLL 1065
Query: 382 ERLFEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMS 441
ERL SD + + VC CGL+ + C CK+ +S +R+PYA KLLFQEL S
Sbjct: 1066 ERLMISSDAFEVDVCGQCGLLGYSGW------CHYCKSSCHVSSLRIPYACKLLFQELQS 1119
Query: 442 MNIAPRL 448
MNI PRL
Sbjct: 1120 MNIIPRL 1126
>sp|P59470|RPC2_MOUSE DNA-directed RNA polymerase III subunit RPC2 OS=Mus musculus
GN=Polr3b PE=2 SV=2
Length = 1133
Score = 265 bits (676), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 160/487 (32%), Positives = 243/487 (49%), Gaps = 93/487 (19%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
MG N R+DTL ++L YP KP+V T+++
Sbjct: 694 MGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTI---------------------------- 725
Query: 61 SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
E + F +LPAG N+ VA++ Y+GY+ ED+++LN ++++RG+ R
Sbjct: 726 -----------------ELIDFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGR 768
Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIY--DKLDDDGIIAPGLRVSGDDV 178
+ +++ K + ++ P R I+ + LD DGI +PG +V V
Sbjct: 769 CLVYKNAKCTLKRYTNQTFDKVMGPMLDA--ATRKPIWRHEILDADGICSPGEKVENKQV 826
Query: 179 VIGKTI-TLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVR 237
++ K++ T+ + E ++ +D + + +++VM++ N + K+ +R
Sbjct: 827 LVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLR 886
Query: 238 SVRIPQIGDKFASRHGQKGTCGIQYRQE-------------------------------V 266
R P+IGDKF+SRHGQKG CG+ QE +
Sbjct: 887 QTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIEL 946
Query: 267 SSNKGEIGDA-----TPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLG 321
+ K + D T F + V+ + L +GY G + + +G TG + A ++ G
Sbjct: 947 LAGKAGVLDGRFHYGTAFGGS-KVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFG 1005
Query: 322 PTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLR 381
P YYQ+LKHMV DK+H+RARGP +L RQP EGR+RDGGLR GEMERDC I +GA+ L
Sbjct: 1006 PVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLL 1065
Query: 382 ERLFEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMS 441
ERL SD + + VC CGL+ + C CK+ +S +R+PYA KLLFQEL S
Sbjct: 1066 ERLMISSDAFEVDVCGQCGLLGYSGW------CHYCKSSCHVSSLRIPYACKLLFQELQS 1119
Query: 442 MNIAPRL 448
MNI PRL
Sbjct: 1120 MNIIPRL 1126
>sp|Q54IZ9|RPC2_DICDI DNA-directed RNA polymerase III subunit rpc2 OS=Dictyostelium
discoideum GN=polr3b PE=3 SV=1
Length = 1608
Score = 253 bits (645), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 149/422 (35%), Positives = 217/422 (51%), Gaps = 63/422 (14%)
Query: 75 RSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFRSYKDAESKR 134
R+++ L + +LPAG N+ VA++ Y+GY+ ED++++N ++++RG+ R + + + K
Sbjct: 1203 RTIDLLNWYKLPAGHNATVAVMSYSGYDIEDALVMNKASLDRGFGRCIVLKKQVTSIKKH 1262
Query: 135 IGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGK-----TITLPEN 189
D ++ P T +R Y LD DGI PG +++ K TI N
Sbjct: 1263 GNDTSDRIFPP---TPNDLRQPKYGLLDSDGIAKPGELAQKGQILVNKYSPLNTIDATPN 1319
Query: 190 EDELEGTTKRFS----KRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIG 245
+ + + + S K D F +D+V+LT D K+ +RS R P++G
Sbjct: 1320 PELIPDSAYKSSYMGYKYDNPAF--------IDKVLLTSGDDEQLLIKMLMRSTRRPELG 1371
Query: 246 DKFASRHGQKGTCGIQYRQE------------------------------------VSSN 269
DKF+SRHGQKG CGI +QE
Sbjct: 1372 DKFSSRHGQKGVCGIIVKQEDMPFSDLGICPDIIMNPHGFPSRMTIGKMIELLAGKAGVL 1431
Query: 270 KGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQRLK 329
G+ G T F V+ IS +L G+ G + + +G TG + +F GP +YQ+LK
Sbjct: 1432 SGKFGFGTCFG-GDRVENISKVLISKGFSYGGKDYVTSGVTGEPLACFIFFGPIFYQKLK 1490
Query: 330 HMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSD 389
HMV DK+H+RARGP L RQP EGRAR GGLR GEMERDC I +GA+ + ERL SD
Sbjct: 1491 HMVMDKMHARARGPTVTLTRQPTEGRARGGGLRLGEMERDCLIGYGASALIMERLMISSD 1550
Query: 390 PYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLM 449
+ ++ C CG + C+ CK+ IS +++PYA KLLFQEL +MNI PRL
Sbjct: 1551 RFTVYACKNCGFLGYEGY------CQYCKSSVDISTIQIPYACKLLFQELQAMNIVPRLK 1604
Query: 450 VV 451
+V
Sbjct: 1605 LV 1606
>sp|Q9LV32|RPD2B_ARATH DNA-directed RNA polymerase D subunit 2b OS=Arabidopsis thaliana
GN=NRPD2b PE=2 SV=1
Length = 1119
Score = 244 bits (623), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 167/506 (33%), Positives = 238/506 (47%), Gaps = 128/506 (25%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
+G TN ++R DTL+ L+YP KPL T + E L E
Sbjct: 673 IGFSSTNPNIRCDTLSQQLFYPQKPLFKTLASECL-----------------------EK 709
Query: 61 SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
V+ N G N+IVA+ + GYNQEDS+++N +++ERG FR
Sbjct: 710 EVLFN----------------------GQNAIVAVNVHLGYNQEDSIVMNKASLERGMFR 747
Query: 121 SVFFRSYK------DAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVS 174
S RSYK D+E ++ D+ QF K + + D L+DDG G +S
Sbjct: 748 SEQIRSYKAEVDTKDSEKRKKMDELVQFGKTYSKIGK------VDSLEDDGFPFIGANMS 801
Query: 175 GDDVVIGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKI 234
D+VIG+ S D S L+++E GIV +V+L+ N +G F +
Sbjct: 802 TGDIVIGRCTE---------------SGADHSIKLKHTERGIVQKVVLSSNDEGKNFAAV 846
Query: 235 RVRSVRIPQIGDKFASRHGQKG-------------------------------------- 256
+R VR P +GDKF+S HGQKG
Sbjct: 847 SLRQVRSPCLGDKFSSMHGQKGVLGYLEEQQNFPFTIQGIVPDIVINPHAFPSRQTPGQL 906
Query: 257 ---------TCGIQYRQEVSSNKGEIG-DATPFNDAVNVQKISTLLQEYGYQLRGNEVMF 306
C IQ ++ S+ ++ ATPF+ V +I+ L G+ GNE ++
Sbjct: 907 LEAALSKGIACPIQKKEGSSAAYTKLTRHATPFSTP-GVTEITEQLHRAGFSRWGNERVY 965
Query: 307 NGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEM 366
NG +G + + +F+GPT+YQRL HM ++K+ R GPV L RQP+ R R GG+RFGEM
Sbjct: 966 NGRSGEMMRSLIFMGPTFYQRLVHMSENKVKFRNTGPVHPLTRQPVADRKRFGGIRFGEM 1025
Query: 367 ERDCQISHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANMRNNTFE-------CKGCKN 419
ERDC I+HGA+ L ERLF +SD ++H+C C A R + C+ C +
Sbjct: 1026 ERDCLIAHGASANLHERLFTLSDSSQMHICRKCKTYANVIERTPSSGRKIRGPYCRVCAS 1085
Query: 420 KTQISQVRLPYAAKLLFQELMSMNIA 445
+ +V +PY AKLL QEL SM I
Sbjct: 1086 SDHVVRVYVPYGAKLLCQELFSMGIT 1111
>sp|Q9LK40|RPD2A_ARATH DNA-directed RNA polymerase D subunit 2a OS=Arabidopsis thaliana
GN=NRPD2a PE=1 SV=1
Length = 1172
Score = 244 bits (623), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 165/505 (32%), Positives = 235/505 (46%), Gaps = 127/505 (25%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
+G TN ++R DTL+ L+YP KPL T + E L+
Sbjct: 727 IGFSSTNPNIRCDTLSQQLFYPQKPLFKTLASECLK-----------------------K 763
Query: 61 SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
V+ N G N+IVA+ + GYNQEDS+++N +++ERG FR
Sbjct: 764 EVLFN----------------------GQNAIVAVNVHLGYNQEDSIVMNKASLERGMFR 801
Query: 121 SVFFRSYK------DAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVS 174
S RSYK D+E ++ D+ QF K + + + D L+DDG G +S
Sbjct: 802 SEQIRSYKAEVDAKDSEKRKKMDELVQFGKTHSKIGK------VDSLEDDGFPFIGANMS 855
Query: 175 GDDVVIGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKI 234
D+VIG+ S D S L+++E GIV +V+L+ N +G F +
Sbjct: 856 TGDIVIGRCTE---------------SGADHSIKLKHTERGIVQKVVLSSNDEGKNFAAV 900
Query: 235 RVRSVRIPQIGDKFASRHGQKG-------------------------------------- 256
+R VR P +GDKF+S HGQKG
Sbjct: 901 SLRQVRSPCLGDKFSSMHGQKGVLGYLEEQQNFPFTIQGIVPDIVINPHAFPSRQTPGQL 960
Query: 257 ---------TCGIQYRQEVSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFN 307
C IQ ++ ATPF+ V +I+ L G+ GNE ++N
Sbjct: 961 LEAALSKGIACPIQKEGSSAAYTKLTRHATPFSTP-GVTEITEQLHRAGFSRWGNERVYN 1019
Query: 308 GHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEME 367
G +G + + +F+GPT+YQRL HM +DK+ R GPV L RQP+ R R GG++FGEME
Sbjct: 1020 GRSGEMMRSMIFMGPTFYQRLVHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEME 1079
Query: 368 RDCQISHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANMRNNTFE-------CKGCKNK 420
RDC I+HGA+ L ERLF +SD ++H+C C A R + C+ C +
Sbjct: 1080 RDCLIAHGASANLHERLFTLSDSSQMHICRKCKTYANVIERTPSSGRKIRGPYCRVCVSS 1139
Query: 421 TQISQVRLPYAAKLLFQELMSMNIA 445
+ +V +PY AKLL QEL SM I
Sbjct: 1140 DHVVRVYVPYGAKLLCQELFSMGIT 1164
>sp|Q6GZR3|RPB2_FRG3G Putative DNA-directed RNA polymerase II subunit RPB2 homolog OS=Frog
virus 3 (isolate Goorha) GN=FV3-062L PE=3 SV=1
Length = 1221
Score = 242 bits (617), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 152/437 (34%), Positives = 223/437 (51%), Gaps = 78/437 (17%)
Query: 75 RSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFRSYKDAESKR 134
RS++ L F E+ G +VAI+ G+NQEDSV+LNAS+++RG F V +R+ A+ +R
Sbjct: 793 RSVKRLGFDEMAHGALPVVAIMTAGGFNQEDSVVLNASSLDRGLFSCVTYRTVSCADKRR 852
Query: 135 IGDQEEQFEKPNRQTCQGMRN--AIYDKLDDDGIIAP---------------------GL 171
E P+ G+RN YD L DDG+I P G
Sbjct: 853 TKYDSEVVCLPD----WGLRNREWDYDLLGDDGVIDPSCAGALARRVEGKRKAAKRPAGQ 908
Query: 172 RVSGDDVVIGKTITLPENE------DELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLN 225
R G + + +P G +RD S ++ SE G +D+V + ++
Sbjct: 909 RTGGGPAGLCDALWIPAGTVLVGKVSHSLGPGGNPMRRDVSLTVKQSEEGYLDRVTVDVD 968
Query: 226 VDGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQE-------------------- 265
DG K K+R+R+ R P++GDKFAS QKGTCG QE
Sbjct: 969 SDGKKLVKVRLRTPRHPEMGDKFASFTAQKGTCGAVLTQEDMPFDKDGVVPDLIINPHAF 1028
Query: 266 ----------------VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGH 309
+ G+ DAT F V+ I+ +E G + V+ +G
Sbjct: 1029 PSRMTVNYLLQMCFGTAACKLGKTYDATAFEREDVVRDIAEAAKEAGIDCW-DSVLHSGS 1087
Query: 310 TGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERD 369
TGR++ ++F+ P YQRLKHMV K+HSR GP L RQP+ GR+R+GG++ GEME+
Sbjct: 1088 TGRRLPTKIFMAPCPYQRLKHMVSGKMHSRTHGPTDALTRQPVAGRSREGGIKIGEMEQW 1147
Query: 370 CQISHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANMRNNTFE-CKGCKNKTQISQVRL 428
C+ISHGA++ L+E ++++SD Y + VC CG I ++ FE C+ C + T +S V+L
Sbjct: 1148 CKISHGASESLKESVYDMSDKYEVPVCKECGRI------SDHFEYCRMC-DATDMSLVKL 1200
Query: 429 PYAAKLLFQELMSMNIA 445
PY K+LFQEL S+ I+
Sbjct: 1201 PYTTKILFQELRSIGIS 1217
>sp|Q91F97|RPB2_IIV6 Probable DNA-directed RNA polymerase II subunit RPB2 homolog
OS=Invertebrate iridescent virus 6 GN=IIV6-428L PE=3 SV=1
Length = 1193
Score = 225 bits (573), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 155/485 (31%), Positives = 228/485 (47%), Gaps = 102/485 (21%)
Query: 5 ITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVIL 64
I + HV+ D V+ Y +PLVTT+ E RF + P G+N++VA+ YTG+NQEDS+IL
Sbjct: 753 IPSHHVKSDNTTRVMDYVQRPLVTTQIAEMNRFNDFPNGLNAMVAVAIYTGFNQEDSIIL 812
Query: 65 NASAVERGYFRSMEY--LRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSV 122
N ++++RG F + Y + E G+N + + + + +L + E YF V
Sbjct: 813 NKASIDRGMFHVVTYKTIIVEERKIGVNEKICMPVASVRRMNNYSLLEDNP-ESPYFGVV 871
Query: 123 FFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGK 182
+S+ V +DV++GK
Sbjct: 872 KVKSF---------------------------------------------VKRNDVLVGK 886
Query: 183 TITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIP 242
IT + +GT + + D ST + SE G VD+++ T + G KI + + P
Sbjct: 887 VIT----KISKDGTRQ---ETDHSTIVSISEEGKVDRIIRT-SKKGILMFKIVIAQQKRP 938
Query: 243 QIGDKFASRHGQKGTCG-----------------------------IQYRQEVSSNKGE- 272
+IGDKF S QKGT G + Q ++S G+
Sbjct: 939 EIGDKFCSAMAQKGTVGMILEEVDMPFMEDGSIPDMIINPHCLPSRMTINQIMASIMGKT 998
Query: 273 -------IGDATPFNDAV------NVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVF 319
GDA+PF ++ + + L+E GY G E M G G+K+ A++F
Sbjct: 999 CCAKNETFGDASPFQESSLEKPQDKIHALCKELEECGYNYNGTETMMCGWNGKKLRAEIF 1058
Query: 320 LGPTYYQRLKHMVDDKIHSRARGPVQ--ILVRQPMEGRARDGGLRFGEMERDCQISHGAA 377
GP YY RL HMV DKI SRA + + RQP+ GRA +GGLR GEME+DC + HG +
Sbjct: 1059 FGPVYYHRLTHMVSDKIFSRASTNQKRHAITRQPLNGRANEGGLRIGEMEKDCMLVHGIS 1118
Query: 378 QFLRERLFEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQ 437
+FL E++F+ SD + I++C C N F C GC N I + P+AAKL FQ
Sbjct: 1119 KFLHEKMFDQSDKFIINLCVPCKSYFKVVKTQNGFFCSGC-NGIDIVKFNCPFAAKLFFQ 1177
Query: 438 ELMSM 442
EL +M
Sbjct: 1178 ELTAM 1182
>sp|P28365|RPA2_EUPOC DNA-directed RNA polymerase I subunit RPA2 OS=Euplotes octocarinatus
GN=RPA2 PE=3 SV=2
Length = 1166
Score = 190 bits (482), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 150/531 (28%), Positives = 223/531 (41%), Gaps = 145/531 (27%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
MG N R D + L +PH+P+V TR+ Q D
Sbjct: 697 MGTPYHNHQFRTDNKIYRLLFPHRPIVKTRT--------------------------QVD 730
Query: 61 SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
E P+G N++VA++ YTGY+ ED++I+N S+ ERG+
Sbjct: 731 -------------------FDIEEYPSGTNAVVAVISYTGYDLEDAMIINKSSYERGFGH 771
Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDV-- 178
V ++SY + N Q+ +G+++++ K ++ ++ +++
Sbjct: 772 GVVYKSYT-----------HDLNESNSQSTRGIKSSVRYKFLNNVSQKDKSKIKLENIDP 820
Query: 179 ----VIGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVD------- 227
IG +T + E + T KR +K ++SE ++ V + N D
Sbjct: 821 DGLPKIGSQLTKGKPELCIFDTLKRGAKLSK---FKDSEKARIETVRVCGNDDKNPDNLS 877
Query: 228 -GYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQ---------------------- 264
GY +R RIP IGDKF+SRHGQKG + + Q
Sbjct: 878 IGYT-----IRYSRIPVIGDKFSSRHGQKGVLSVLWPQVDMPFTENGITPDLIINPHAFP 932
Query: 265 --------------EVSSNKGEIGDATPF---NDAVNVQKISTLLQEYGYQLRGNEVMFN 307
+ S +GE F +D V L + G+ GNE+M++
Sbjct: 933 SRMTMGMLIQSMAAKSGSLRGEFKTVETFQRYDDNDIVGHFGKELLDKGFNYHGNELMYS 992
Query: 308 GHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEME 367
G G + A +F+G YYQRL+HMV DK +R GP+ IL QP++GR + GG+RFGEME
Sbjct: 993 GIFGTPLKADIFIGVVYYQRLRHMVSDKSQARGTGPIDILTHQPVKGRKKGGGIRFGEME 1052
Query: 368 RDCQISHGAAQFLRERLFEVSDPYRIHVCNFCGLIAI-----ANMRNNTF---------- 412
RD ++HGAA L +RLF SD VC CG I A M+ TF
Sbjct: 1053 RDSLLAHGAAYCLNDRLFRSSDYSEGFVCQNCGSILSCYVNRAIMKTQTFIPPSLDESNK 1112
Query: 413 -------------ECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMV 450
CK CK + +V LP+ + L EL SM I + V
Sbjct: 1113 DTEDKEIHMNEKVICKVCKKNSNCKKVALPFVLRFLANELASMGIKLKFTV 1163
>sp|O54888|RPA2_RAT DNA-directed RNA polymerase I subunit RPA2 OS=Rattus norvegicus
GN=Polr1b PE=1 SV=1
Length = 1135
Score = 189 bits (481), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 128/421 (30%), Positives = 193/421 (45%), Gaps = 76/421 (18%)
Query: 86 PAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFRSYKDAESKRIGDQEEQFEKP 145
P G N+IVA++ YTGY+ ED++I+N ++ ERG+ ++S D E+F++
Sbjct: 736 PIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKS-------EFIDLSEKFKQG 788
Query: 146 NRQTCQGMRNA---IYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENEDELEGTTKRFSK 202
+ G++ + KLD+DG+ G ++ D G N + EG
Sbjct: 789 DDSLVFGVKPGDPRVMQKLDNDGLPFIGAKLEFGDPYYGYL-----NLNTGEGFV----- 838
Query: 203 RDGSTFLRNSETGIVDQVMLTLNVDG---YKFCKIRVRSVRIPQIGDKFASRHGQKGTCG 259
+ ++ E +VD + + N G +K + VR R P IGDKFASRHGQKG
Sbjct: 839 ----VYYKSKENCVVDNIKVCSNDTGSGKFKCVCVTVRVPRNPTIGDKFASRHGQKGILS 894
Query: 260 IQYRQE------------------------------------VSSNKGEIGDATPF---N 280
+ E ++ G DATPF
Sbjct: 895 RLWPAEDMPFTESGMMPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFSE 954
Query: 281 DAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRA 340
+ ++ +L+ GY G E +++G +G ++ A +F+G YYQRL+HMV DK R
Sbjct: 955 ENSALEYFGEMLKAAGYNFYGTERLYSGISGMELEADIFIGVVYYQRLRHMVSDKFQVRT 1014
Query: 341 RGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNFCG 400
G + QP+ GR GG+RFGEMERD ++HG + L +RLF SD HVC CG
Sbjct: 1015 TGARDKVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCG 1074
Query: 401 LI----------AIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMV 450
+ + + MRN + C C I V +PY + EL +MNI +L V
Sbjct: 1075 SLLSPLLEKPPPSWSAMRNRKYNCTVCGRSDSIDTVSVPYVFRYFVAELAAMNIKVKLDV 1134
Query: 451 V 451
+
Sbjct: 1135 I 1135
>sp|P70700|RPA2_MOUSE DNA-directed RNA polymerase I subunit RPA2 OS=Mus musculus GN=Polr1b
PE=2 SV=2
Length = 1135
Score = 186 bits (473), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 128/421 (30%), Positives = 191/421 (45%), Gaps = 76/421 (18%)
Query: 86 PAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFRSYKDAESKRIGDQEEQFEKP 145
P G N+IVA++ YTGY+ ED++I+N ++ ERG+ ++S D E+F++
Sbjct: 736 PIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKS-------EFIDLSEKFKQG 788
Query: 146 NRQTCQGMRNA---IYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENEDELEGTTKRFSK 202
G++ + KLDDDG+ G ++ D N + EG
Sbjct: 789 EDNLVFGVKPGDPRVMQKLDDDGLPFIGAKLEYGDPYYSYL-----NLNTGEGFV----- 838
Query: 203 RDGSTFLRNSETGIVDQVMLTLNVDG---YKFCKIRVRSVRIPQIGDKFASRHGQKGTCG 259
+ ++ E +VD + + N G +K I VR R P IGDKFASRHGQKG
Sbjct: 839 ----VYYKSKENCVVDNIKVCSNDMGSGKFKCICITVRIPRNPTIGDKFASRHGQKGILS 894
Query: 260 IQYRQE------------------------------------VSSNKGEIGDATPF---N 280
+ E ++ G DATPF
Sbjct: 895 RLWPAEDMPFTESGMMPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFSE 954
Query: 281 DAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRA 340
+ ++ +L+ GY G E +++G +G ++ A +F+G YYQRL+HMV DK R
Sbjct: 955 ENSALEYFGEMLKAAGYNFYGTERLYSGISGMELEADIFIGVVYYQRLRHMVSDKFQVRT 1014
Query: 341 RGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNFCG 400
G + QP+ GR GG+RFGEMERD ++HG + L +RLF SD H+C CG
Sbjct: 1015 TGARDKVTNQPLGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHMCVECG 1074
Query: 401 LI----------AIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMV 450
+ + + MRN + C C I V +PY + EL +MNI +L V
Sbjct: 1075 SLLSPLLEKPPPSWSAMRNRKYNCTVCGRSDTIDTVSVPYVFRYFVAELAAMNIKVKLDV 1134
Query: 451 V 451
+
Sbjct: 1135 I 1135
>sp|Q9H9Y6|RPA2_HUMAN DNA-directed RNA polymerase I subunit RPA2 OS=Homo sapiens GN=POLR1B
PE=1 SV=2
Length = 1135
Score = 186 bits (472), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 129/429 (30%), Positives = 193/429 (44%), Gaps = 76/429 (17%)
Query: 78 EYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFRSYKDAESKRIGD 137
+Y P G N+IVA++ YTGY+ ED++I+N ++ ERG+ ++S D
Sbjct: 728 DYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKS-------EFID 780
Query: 138 QEEQFEKPNRQTCQGMRNA---IYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENEDELE 194
E+ ++ + G++ + KLDDDG+ G ++ D P
Sbjct: 781 LSEKIKQGDSSLVFGIKPGDPRVLQKLDDDGLPFIGAKLQYGD---------PYYSYLNL 831
Query: 195 GTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDG---YKFCKIRVRSVRIPQIGDKFASR 251
T + F + ++ E +VD + + N G +K I +R R P IGDKFASR
Sbjct: 832 NTGESFV-----MYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASR 886
Query: 252 HGQKGTCGIQYRQE------------------------------------VSSNKGEIGD 275
HGQKG + E ++ G D
Sbjct: 887 HGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHD 946
Query: 276 ATPF---NDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQRLKHMV 332
ATPF + ++ +L+ GY G E +++G +G ++ A +F+G YYQRL+HMV
Sbjct: 947 ATPFIFSEENSALEYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMV 1006
Query: 333 DDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYR 392
DK R G + QP+ GR GG+RFGEMERD ++HG + L +RLF SD
Sbjct: 1007 SDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSV 1066
Query: 393 IHVCNFCGLI----------AIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSM 442
HVC CG + + + MRN + C C I V +PY + EL +M
Sbjct: 1067 AHVCVKCGSLLSPLLEKPPPSWSAMRNRKYNCTLCSRSDTIDTVSVPYVFRYFVAELAAM 1126
Query: 443 NIAPRLMVV 451
NI +L VV
Sbjct: 1127 NIKVKLDVV 1135
>sp|Q5REE8|RPA2_PONAB DNA-directed RNA polymerase I subunit RPA2 OS=Pongo abelii GN=POLR1B
PE=2 SV=1
Length = 1136
Score = 186 bits (472), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 132/433 (30%), Positives = 195/433 (45%), Gaps = 83/433 (19%)
Query: 78 EYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFRSYKDAESKRIGD 137
+Y P G N+IVA++ YTGY+ ED++I+N ++ ERG+ ++S D
Sbjct: 728 DYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKS-------EFID 780
Query: 138 QEEQFEKPNRQTCQGMRNA---IYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENEDELE 194
E+ ++ + GM+ I KLDDDG+ G ++ D
Sbjct: 781 LSEKIKQGDSSLVFGMKPGDPRILQKLDDDGLPFIGAKLQYGDPYY-------------- 826
Query: 195 GTTKRFSKRDGSTFL---RNSETGIVDQVMLTLNVDG---YKFCKIRVRSVRIPQIGDKF 248
+ G +F+ ++ E +VD + + N G +K I +R R P IGDKF
Sbjct: 827 ---SYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKF 883
Query: 249 ASRHGQKGTC-------------------------GIQYRQEV-----------SSNKGE 272
ASRHGQKG G R + ++ G
Sbjct: 884 ASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGL 943
Query: 273 IGDATPF---NDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQRLK 329
DATPF + ++ +L+ GY G E +++G +G ++ A +F+G YYQRL+
Sbjct: 944 CHDATPFIFSEENSALEYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLR 1003
Query: 330 HMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQF-LRERLFEVS 388
HMV DK R G + QP+ GR GG+RFGEMERD ++HG + F L +RLF S
Sbjct: 1004 HMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFFLLHDRLFNCS 1063
Query: 389 DPYRIHVCNFCGLI----------AIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQE 438
D HVC CG + + + MRN + C C I V +PY + E
Sbjct: 1064 DRSVAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYNCTLCNRSDTIDTVSVPYVFRYFVAE 1123
Query: 439 LMSMNIAPRLMVV 451
L +MNI +L VV
Sbjct: 1124 LAAMNIKVKLDVV 1136
>sp|P20028|RPA2_DROME DNA-directed RNA polymerase I subunit RPA2 OS=Drosophila melanogaster
GN=RpI135 PE=2 SV=2
Length = 1129
Score = 184 bits (468), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 128/436 (29%), Positives = 192/436 (44%), Gaps = 92/436 (21%)
Query: 74 FRSMEY--LRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFRSYKDAE 131
FR + Y ++ + G N+IVA++ YTGY+ ED++I+N +A ERG+ +++
Sbjct: 720 FRPVHYDNIQLDDFAMGTNAIVAVISYTGYDMEDAMIINKAAYERGFAYGSIYKTKFLTL 779
Query: 132 SKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVS---------GDDVVIGK 182
K+ P + LD DG+ PG ++S +V K
Sbjct: 780 DKKSSYFARHPHMPE----------LIKHLDTDGLPHPGSKLSYGSPLYCYFDGEVATYK 829
Query: 183 TITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIP 242
+ + E ED + + ++ D S K I +R R
Sbjct: 830 VVKMDEKEDCIVESIRQLGSFDLSP---------------------KKMVAITLRVPRPA 868
Query: 243 QIGDKFASRHGQKGTCGIQYRQEV------------------------------------ 266
IGDKFASR GQKG C +Y E
Sbjct: 869 TIGDKFASRAGQKGICSQKYPAEDLPFTESGLIPDIVFNPHGFPSRMTIAMMIETMAGKG 928
Query: 267 SSNKGEIGDATPF---NDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
++ G + DATPF + + +L+ GY G E +++G GR++ A +F G
Sbjct: 929 AAIHGNVYDATPFRFSEENTAIDYFGKMLEAGGYNYYGTERLYSGVDGREMTADIFFGVV 988
Query: 324 YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRER 383
+YQRL+HMV DK R+ G V+ QP++GR R GG+RFGEMERD ISHGAA L++R
Sbjct: 989 HYQRLRHMVFDKWQVRSTGAVEARTHQPIKGRKRGGGVRFGEMERDALISHGAAFLLQDR 1048
Query: 384 LFEVSDPYRIHVCNFCGLI-----------AIANMRNNTFECKGCKNKTQISQVRLPYAA 432
LF SD VC+ CG I + + C+ C + + +S + +P++
Sbjct: 1049 LFHNSDKTHTLVCHKCGSILAPLQRIVKRNETGGLSSQPDTCRLCGDNSSVSMIEIPFSF 1108
Query: 433 KLLFQELMSMNIAPRL 448
K L EL S+NI R
Sbjct: 1109 KYLVTELSSVNINARF 1124
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
MG N+ + + L P PL + ++ + G N+IVA++ YTGY+ ED
Sbjct: 694 MGTPCLNWPKQAANKLYRLQTPGTPLFRPVHYDNIQLDDFAMGTNAIVAVISYTGYDMED 753
Query: 61 SVILNASAVERGY 73
++I+N +A ERG+
Sbjct: 754 AMIINKAAYERGF 766
>sp|Q54BM1|RPA2_DICDI DNA-directed RNA polymerase I subunit rpa2 OS=Dictyostelium
discoideum GN=polr1b PE=3 SV=1
Length = 1130
Score = 184 bits (468), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 138/446 (30%), Positives = 209/446 (46%), Gaps = 73/446 (16%)
Query: 60 DSVILNASAVERGYFRSMEYLRFR--ELPAGINSIVAILCYTGYNQEDSVILNASAVERG 117
D+ + V++ + +FR + P G N+++A++ TGY+ ED++I+N SA ERG
Sbjct: 702 DNKLYKVQNVQKPIVHTKNQFKFRCNDYPHGCNAVIAVISNTGYDMEDAMIINKSAYERG 761
Query: 118 YFR-SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGD 176
+ SV+ Y D + +FE+ ++T G N + D+LD I GL G
Sbjct: 762 FGHGSVYKNEYIDLDQGL-----SRFEQ--KKTFFGRPNTVVDELDK-FIDTDGLPFVGR 813
Query: 177 DVVIGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGY------- 229
+ G+ + TK + + E ++ V + +G
Sbjct: 814 LIKPGEPYYTYIRPSDGRQVTKDY---------KGKEEAYIEDVRIIFGPNGATRDPSKI 864
Query: 230 -KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQ------------------------ 264
C +++R R P IGDKF+SRHGQKG + +
Sbjct: 865 NNIC-VKLRFNRNPVIGDKFSSRHGQKGVLSQLWPEINMPFTESGMKPDVIINPNAFPSR 923
Query: 265 -------EVSSNK-----GEIGDATPFNDAVNVQKISTL---LQEYGYQLRGNEVMFNGH 309
E+ + K G+ DAT F N I L + G+ GNE M++G
Sbjct: 924 MTIGMLVEILAGKAGAIHGKFQDATAFQFDENNTAIDFFGEQLAKAGFNRFGNEQMYSGT 983
Query: 310 TGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERD 369
TG++ ++F G YYQRL+HMV DK RA G V L RQP++GR GG+RFGEMERD
Sbjct: 984 TGKEFECEIFFGVCYYQRLRHMVKDKYQVRALGKVNALTRQPIKGRKVGGGIRFGEMERD 1043
Query: 370 CQISHGAAQFLRERLFEVSDPYRIHVCNFCG----LIAIANMRNNTF-ECKGCKNKTQIS 424
++HGA+ L +RL + SD +I VC CG + + + N T ECK CK+ I+
Sbjct: 1044 SLLAHGASFCLNDRLMKSSDFAKIKVCKLCGSTLTIYSKKDYSNQTVSECKSCKSSDSIA 1103
Query: 425 QVRLPYAAKLLFQELMSMNIAPRLMV 450
+ +PY L EL ++NI +L V
Sbjct: 1104 TISIPYVFTYLVAELAAVNITMKLQV 1129
Score = 55.5 bits (132), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 44/73 (60%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
MG + ++ R D + + KP+V T++ R + P G N+++A++ TGY+ ED
Sbjct: 690 MGTPLHSYPFRTDNKLYKVQNVQKPIVHTKNQFKFRCNDYPHGCNAVIAVISNTGYDMED 749
Query: 61 SVILNASAVERGY 73
++I+N SA ERG+
Sbjct: 750 AMIINKSAYERGF 762
>sp|Q9P7X8|RPA2_SCHPO Probable DNA-directed RNA polymerase I subunit RPA2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rpa2 PE=3 SV=2
Length = 1174
Score = 182 bits (461), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 119/368 (32%), Positives = 175/368 (47%), Gaps = 78/368 (21%)
Query: 86 PAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFR--SYKDAESKRIGDQEEQF- 142
P G N++VA++ YTGY+ ED++ILN SA ERG+ ++ S+ ++ +R G+
Sbjct: 751 PNGTNAVVAVISYTGYDMEDAMILNKSAHERGFGYGTVYKGESFDLSQKRRRGEPVVHHF 810
Query: 143 -----EKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENEDELEGTT 197
P R+ Q KLD DG+ G+++ D ++
Sbjct: 811 GFAPGSTPRREWLQ--------KLDADGLPFIGIKLEDGDPIVA---------------- 846
Query: 198 KRFSKRDGSTFLRN---SETGIVDQVMLTLNVDGYKFCK---IRVRSVRIPQIGDKFASR 251
+ + G F+ +E G VD+V L N G C+ +++R R P IGDKF+SR
Sbjct: 847 -YYDESTGQNFIETYHGTEPGFVDEVRLLGNDVGDSECQQIHVKLRITRSPIIGDKFSSR 905
Query: 252 HGQKGTCGIQYRQE-----------------------------VSSNKGEIG-------D 275
HGQKG C ++ + S G+ G D
Sbjct: 906 HGQKGICSQKWPTVDMPFTESGMQPDIIINPHAFPSRMTIGMFIESLAGKAGACHGLAQD 965
Query: 276 ATPF---NDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQRLKHMV 332
+TPF L + GY GNE M++G TG+++ A +++G YYQRL+HMV
Sbjct: 966 STPFIYSEQQTAADYFGEQLVKAGYNYHGNEPMYSGITGQEMKADIYIGVVYYQRLRHMV 1025
Query: 333 DDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYR 392
DK R GP+ L RQP++GR R GG+RFGEMERD I HG + +++RL SD +
Sbjct: 1026 SDKFQVRTTGPIHNLTRQPVKGRKRAGGIRFGEMERDAVIGHGTSFLMQDRLMNCSDYAQ 1085
Query: 393 IHVCNFCG 400
VC CG
Sbjct: 1086 SWVCRDCG 1093
>sp|P0C8K2|RPB2_ASFK5 DNA-directed RNA polymerase subunit 2 OS=African swine fever virus
(isolate Pig/Kenya/KEN-50/1950) GN=Ken-065 PE=3 SV=1
Length = 1242
Score = 176 bits (446), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 128/398 (32%), Positives = 189/398 (47%), Gaps = 50/398 (12%)
Query: 85 LPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFRSYKDAESKRIGDQEEQFEK 144
+P G+N+IVA + Y GYNQEDSVI++ S ++RG F F+R K I E F K
Sbjct: 843 IPNGLNTIVAYMIYGGYNQEDSVIVSQSFIDRGGFAGTFYREEKVELESDI----ESFGK 898
Query: 145 PNRQTCQGMR-NAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENEDELEGTTKRFSKR 203
P+ + ++ A Y+KL D G + G V D++IGK + +DEL R
Sbjct: 899 PDPLITKNLKPGANYEKLVD-GFVPVGTVVKKGDIIIGKVAKIRGEKDELNKYIDR---- 953
Query: 204 DGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGTC----- 258
S E +VD VM + F +R+R R IGDK +SR G KG
Sbjct: 954 --SVMYGFDEPAVVDAVMRPHGPNDEIFGLMRLRYERNLNIGDKMSSRSGNKGIAALALP 1011
Query: 259 ---------GIQYRQEVSSN----------------------KGEIGDATPFNDAVNVQK 287
G+Q V+ + +G + D T F +NVQ
Sbjct: 1012 TSDMPFTEDGLQPDLIVNPHSHPSRMTNGQMIETTVGLANALQGVVTDGTAFL-PINVQL 1070
Query: 288 ISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQRL-KHMVDDKIHSRARGPVQI 346
+S L + G + G + MFNG TG +A +F+GPTY+QRL K ++DD+ + GP
Sbjct: 1071 LSERLAQEGLRFNGCQKMFNGQTGEYFDAAIFIGPTYHQRLQKFVLDDRYAVASYGPTDA 1130
Query: 347 LVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIAN 406
L QP++G+ GGLR GEME + GA Q + E+ + SD ++C CG AI N
Sbjct: 1131 LTGQPLDGKRSHGGLRLGEMEHWVLTAQGAMQTIIEKSHDDSDGCISYICRNCGEPAIYN 1190
Query: 407 MRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
+ ++C C + IS V ++ + E+ + N+
Sbjct: 1191 ASHPIYKCMNCDVQADISMVDSRRSSIVFQHEMRAANV 1228
>sp|P0C8K3|RPB2_ASFM2 DNA-directed RNA polymerase subunit 2 OS=African swine fever virus
(isolate Tick/Malawi/Lil 20-1/1983) GN=Mal-061 PE=3 SV=1
Length = 1242
Score = 176 bits (446), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 127/398 (31%), Positives = 189/398 (47%), Gaps = 50/398 (12%)
Query: 85 LPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFRSYKDAESKRIGDQEEQFEK 144
+P G+N+IVA + Y GYNQEDSVI++ S ++RG F F+R E + E F K
Sbjct: 843 IPNGLNTIVAYMIYGGYNQEDSVIVSQSFIDRGGFAGTFYRE----EKVELESDIESFGK 898
Query: 145 PNRQTCQGMR-NAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENEDELEGTTKRFSKR 203
P+ + ++ A Y+KL D G + G V D++IGK + +DEL R
Sbjct: 899 PDPLITKNLKPGANYEKLVD-GFVPVGTVVKKGDIIIGKVAKIRGEKDELNKYIDR---- 953
Query: 204 DGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGTC----- 258
S E +VD VM + F +R+R R IGDK +SR G KG
Sbjct: 954 --SVMYGFDEPAVVDAVMRPHGPNDEIFGLMRLRYERNLNIGDKMSSRSGNKGIAALALP 1011
Query: 259 ---------GIQYRQEVSSN----------------------KGEIGDATPFNDAVNVQK 287
G+Q V+ + +G + D T F +NVQ
Sbjct: 1012 TSDMPFTEDGLQPDLIVNPHSHPSRMTNGQMIETTVGLANALQGVVTDGTAFL-PINVQL 1070
Query: 288 ISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQRL-KHMVDDKIHSRARGPVQI 346
+S L + G + G + MFNG TG +A +F+GPTY+QRL K ++DD+ + GP
Sbjct: 1071 LSERLAQEGLRFNGCQKMFNGQTGEYFDAAIFIGPTYHQRLQKFVLDDRYAVASYGPTDA 1130
Query: 347 LVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIAN 406
L QP++G+ GGLR GEME + GA Q + E+ + SD ++C CG AI N
Sbjct: 1131 LTGQPLDGKRSHGGLRLGEMEHWVLTAQGAMQTIIEKSHDDSDGCISYICRNCGEPAIYN 1190
Query: 407 MRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
+ ++C C + IS V ++ + E+ + N+
Sbjct: 1191 ASHPIYKCMNCDVQADISMVDSRRSSIVFQHEMRAANV 1228
>sp|P0C8K5|RPB2_ASFWA DNA-directed RNA polymerase subunit 2 OS=African swine fever virus
(isolate Warthog/Namibia/Wart80/1980) GN=War-063 PE=3
SV=1
Length = 1242
Score = 174 bits (442), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 128/398 (32%), Positives = 188/398 (47%), Gaps = 50/398 (12%)
Query: 85 LPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFRSYKDAESKRIGDQEEQFEK 144
+P G+N+IVA + Y GYNQEDSVI++ S ++RG F F+R K I E F K
Sbjct: 843 IPNGLNTIVAYMIYGGYNQEDSVIVSQSFIDRGGFAGTFYREEKVELESDI----ESFGK 898
Query: 145 PNRQTCQGMR-NAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENEDELEGTTKRFSKR 203
P+ + ++ A Y+KL D G + G V D++IGK + +DEL R
Sbjct: 899 PDPLITKNLKPGANYEKLVD-GFVPVGTVVKKGDIIIGKVAKIRGEKDELNKYIDR---- 953
Query: 204 DGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGTC----- 258
S E +VD VM + F +R+R R IGDK +SR G KG
Sbjct: 954 --SVMYGFDEPAVVDAVMRPHGPNDEIFGLMRLRYERNLNIGDKMSSRSGNKGIAALALP 1011
Query: 259 ---------GIQYRQEVSSN----------------------KGEIGDATPFNDAVNVQK 287
G+Q V+ + +G + D T F +NVQ
Sbjct: 1012 TSDMPFTEDGLQPDLIVNPHSHPSRMTNGQMIETTVGLANALQGVVTDGTAFL-PINVQL 1070
Query: 288 ISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQRL-KHMVDDKIHSRARGPVQI 346
+S L + G + G + MFNG TG +A +F+GPTY+QRL K ++DD+ + GP
Sbjct: 1071 LSERLAQEGLRFNGCQKMFNGQTGEYFDAAIFIGPTYHQRLQKFVLDDRYAVASYGPTDA 1130
Query: 347 LVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIAN 406
L QP++G+ GGLR GEME + GA Q + E+ + SD +VC CG AI N
Sbjct: 1131 LTGQPLDGKRSHGGLRLGEMEHWVLTAQGAMQTIIEKSHDDSDGCISYVCRNCGEPAIYN 1190
Query: 407 MRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
+ ++C C + I V ++ + E+ + N+
Sbjct: 1191 ASHPIYKCMNCDVQADIGMVDSRRSSIVFQHEMRAANV 1228
>sp|P0C8K4|RPB2_ASFP4 DNA-directed RNA polymerase subunit 2 OS=African swine fever virus
(isolate Tick/South Africa/Pretoriuskop Pr4/1996)
GN=Pret-065 PE=3 SV=1
Length = 1242
Score = 174 bits (442), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 128/398 (32%), Positives = 188/398 (47%), Gaps = 50/398 (12%)
Query: 85 LPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFRSYKDAESKRIGDQEEQFEK 144
+P G+N+IVA + Y GYNQEDSVI++ S ++RG F F+R K I E F K
Sbjct: 843 IPNGLNTIVAYMIYGGYNQEDSVIVSQSFIDRGGFAGTFYREEKVELESDI----ESFGK 898
Query: 145 PNRQTCQGMR-NAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENEDELEGTTKRFSKR 203
P+ + ++ A Y+KL D G + G V D++IGK + +DEL R
Sbjct: 899 PDPLITKNLKPGANYEKLVD-GFVPVGTVVKKGDIIIGKVAKIRGEKDELNKYIDR---- 953
Query: 204 DGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGTC----- 258
S E +VD VM + F +R+R R IGDK +SR G KG
Sbjct: 954 --SVMYGFDEPAVVDAVMRPHGPNDEIFGLMRLRYERNLNIGDKMSSRSGNKGIAALALP 1011
Query: 259 ---------GIQYRQEVSSN----------------------KGEIGDATPFNDAVNVQK 287
G+Q V+ + +G + D T F +NVQ
Sbjct: 1012 TSDMPFTEDGLQPDLIVNPHSHPSRMTNGQMIETTVGLANALQGVVTDGTAFL-PINVQL 1070
Query: 288 ISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQRL-KHMVDDKIHSRARGPVQI 346
+S L + G + G + MFNG TG +A +F+GPTY+QRL K ++DD+ + GP
Sbjct: 1071 LSERLAQEGLRFNGCQKMFNGQTGEYFDAAIFIGPTYHQRLQKFVLDDRYAVASYGPTDA 1130
Query: 347 LVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIAN 406
L QP++G+ GGLR GEME + GA Q + E+ + SD +VC CG AI N
Sbjct: 1131 LTGQPLDGKRSHGGLRLGEMEHWVLTAQGAMQTIIEKSHDDSDGCISYVCRNCGEPAIYN 1190
Query: 407 MRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
+ ++C C + I V ++ + E+ + N+
Sbjct: 1191 ASHPIYKCMNCDVQADIGMVDSRRSSIVFQHEMRAANV 1228
>sp|P42487|RPB2_ASFB7 DNA-directed RNA polymerase subunit 2 OS=African swine fever virus
(strain Badajoz 1971 Vero-adapted) GN=Ba71V-053 PE=3 SV=1
Length = 1242
Score = 174 bits (441), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 126/398 (31%), Positives = 188/398 (47%), Gaps = 50/398 (12%)
Query: 85 LPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFRSYKDAESKRIGDQEEQFEK 144
+P G+N+IVA + Y GYNQEDSVI++ S ++RG F F+R E + E F K
Sbjct: 843 IPNGLNTIVAYMIYGGYNQEDSVIVSQSFIDRGGFAGTFYRE----EKVELESDIESFGK 898
Query: 145 PNRQTCQGMR-NAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENEDELEGTTKRFSKR 203
P+ + ++ A Y+KL D G + G V D++IGK + +DEL R
Sbjct: 899 PDPLITKNLKPGANYEKLVD-GFVPVGTVVKKGDIIIGKVAKIRGEKDELNKYIDR---- 953
Query: 204 DGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGTC----- 258
S E +VD VM + F +R+R R IGDK +SR G KG
Sbjct: 954 --SVMYGFDEPAVVDAVMRPHGPNDEIFGLMRLRYERNLNIGDKMSSRSGNKGIAALALP 1011
Query: 259 ---------GIQYRQEVSSN----------------------KGEIGDATPFNDAVNVQK 287
G+Q V+ + +G + D T F +NVQ
Sbjct: 1012 TSDMPFTEDGLQPDLIVNPHSHPSRMTNGQMIETTVGLANALQGVVTDGTAFL-PINVQL 1070
Query: 288 ISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQRL-KHMVDDKIHSRARGPVQI 346
+S L + G + G + MFNG TG +A +F+GPTY+QRL K ++DD+ + GP
Sbjct: 1071 LSERLAQEGLRFNGCQKMFNGQTGEYFDAAIFIGPTYHQRLQKFVLDDRYAVASYGPTDA 1130
Query: 347 LVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIAN 406
L QP++G+ GGLR GEME + GA Q + E+ + SD ++C CG AI N
Sbjct: 1131 LTGQPLDGKRSHGGLRLGEMEHWVLTAQGAMQTIIEKSHDDSDGCISYICRNCGEPAIYN 1190
Query: 407 MRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
+ ++C C + I V ++ + E+ + N+
Sbjct: 1191 ASHPIYKCMNCDVQADIGMVDSRRSSIVFQHEMRAANV 1228
>sp|Q75DS1|RPA2_ASHGO DNA-directed RNA polymerase I subunit RPA2 OS=Ashbya gossypii (strain
ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)
GN=RPA2 PE=3 SV=2
Length = 1196
Score = 172 bits (436), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 117/361 (32%), Positives = 177/361 (49%), Gaps = 58/361 (16%)
Query: 85 LPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFRSYKDAESKRIGDQEEQFEK 144
P G N++VA++ YTGY+ +D++I+N SA ERG+ +++ K S G + +
Sbjct: 758 FPNGTNAVVAVISYTGYDMDDAMIINKSADERGFSYGTVYKTEKIDLSLSRGRGDPVTQH 817
Query: 145 PNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENEDELEGTTKRFSKRD 204
T + + + +KLD+DG+ G V D + +D L T +
Sbjct: 818 FGFGTDEWPKEWL-EKLDEDGLPIIGSYVEEGDPICAYF------DDTLNKTKIK----- 865
Query: 205 GSTFLRNSETGIVDQVML----TLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGTC-- 258
T+ +SE +++V L + ++ I+ R R+PQIGDKF+SRHGQKG C
Sbjct: 866 --TY-HSSEPAYIEEVTLIGDESNKFQELQYITIKYRIRRVPQIGDKFSSRHGQKGVCSR 922
Query: 259 ------------GIQ------------------YRQEVSSNKGEIG----DATPFN---D 281
GIQ + + ++ G + DATP+ +
Sbjct: 923 KWPTVDMPFSETGIQPDVIINPHAFPSRMTIGMFVESLAGKAGALHGIAQDATPWTFSEE 982
Query: 282 AVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRAR 341
L + GY GNE M++G TG ++ A +++G YYQRL+HMV+DK R+
Sbjct: 983 DTPADYFGDQLLKAGYNYHGNEPMYSGATGEELRADIYIGVVYYQRLRHMVNDKFQVRST 1042
Query: 342 GPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNFCGL 401
GPV L QP++GR R GG+R GEMERD I HG + L++RL SD + VC CG
Sbjct: 1043 GPVNSLTMQPVKGRKRHGGIRVGEMERDALIGHGTSFLLQDRLLNSSDYTQSAVCRECGS 1102
Query: 402 I 402
I
Sbjct: 1103 I 1103
>sp|P22138|RPA2_YEAST DNA-directed RNA polymerase I subunit RPA135 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPA135 PE=1
SV=1
Length = 1203
Score = 171 bits (432), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 118/372 (31%), Positives = 179/372 (48%), Gaps = 80/372 (21%)
Query: 85 LPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFRSYK----------DAESKR 134
P G N++VA++ YTGY+ +D++I+N SA ERG+ +++ K D ++
Sbjct: 765 FPNGFNAVVAVISYTGYDMDDAMIINKSADERGFGYGTMYKTEKVDLALNRNRGDPITQH 824
Query: 135 IGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENEDELE 194
G +++ K +KLD+DG+ G V D + +D L
Sbjct: 825 FGFGNDEWPK-----------EWLEKLDEDGLPYIGTYVEEGDPICAYF------DDTLN 867
Query: 195 GTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV-----RIPQIGDKFA 249
T + T+ +SE +++V L + + KF +++ S+ R PQIGDKF+
Sbjct: 868 KTKIK-------TY-HSSEPAYIEEVNL-IGDESNKFQELQTVSIKYRIRRTPQIGDKFS 918
Query: 250 SRHGQKGTC--------------GIQ------------------YRQEVSSNKGEIG--- 274
SRHGQKG C GIQ + + ++ G +
Sbjct: 919 SRHGQKGVCSRKWPTIDMPFSETGIQPDIIINPHAFPSRMTIGMFVESLAGKAGALHGIA 978
Query: 275 -DATPF---NDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQRLKH 330
D+TP+ D L + GY GNE M++G TG ++ A +++G YYQRL+H
Sbjct: 979 QDSTPWIFNEDDTPADYFGEQLAKAGYNYHGNEPMYSGATGEELRADIYVGVVYYQRLRH 1038
Query: 331 MVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDP 390
MV+DK R+ GPV L QP++GR R GG+R GEMERD I HG + L++RL SD
Sbjct: 1039 MVNDKFQVRSTGPVNSLTMQPVKGRKRHGGIRVGEMERDALIGHGTSFLLQDRLLNSSDY 1098
Query: 391 YRIHVCNFCGLI 402
+ VC CG I
Sbjct: 1099 TQASVCRECGSI 1110
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.138 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 162,638,506
Number of Sequences: 539616
Number of extensions: 6855506
Number of successful extensions: 19264
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 14520
Number of HSP's gapped (non-prelim): 3406
length of query: 451
length of database: 191,569,459
effective HSP length: 121
effective length of query: 330
effective length of database: 126,275,923
effective search space: 41671054590
effective search space used: 41671054590
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)