Query psy7583
Match_columns 451
No_of_seqs 181 out of 1443
Neff 6.1
Searched_HMMs 29240
Date Fri Aug 16 22:08:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7583.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7583hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1twf_B DNA-directed RNA polyme 100.0 3E-123 1E-127 1064.7 35.6 404 1-450 778-1218(1224)
2 3h0g_B DNA-directed RNA polyme 100.0 1E-122 4E-127 1051.4 26.3 404 1-450 767-1206(1210)
3 4ayb_B DNA-directed RNA polyme 100.0 1E-118 3E-123 1028.6 34.2 403 1-450 680-1118(1131)
4 2a6h_C DNA-directed RNA polyme 100.0 3E-105 1E-109 902.2 22.8 384 7-450 610-1103(1119)
5 3lu0_C DNA-directed RNA polyme 100.0 6E-101 2E-105 862.9 19.8 411 14-449 687-1340(1342)
6 3tbi_B DNA-directed RNA polyme 99.4 4.3E-13 1.5E-17 127.0 7.9 94 122-224 2-106 (228)
7 3qqc_A DNA-directed RNA polyme 99.4 3.9E-13 1.3E-17 140.1 6.9 61 390-450 2-62 (436)
8 2a6h_C DNA-directed RNA polyme 98.2 4.3E-07 1.5E-11 103.7 2.5 49 34-82 660-708 (1119)
9 3lu0_C DNA-directed RNA polyme 97.8 6.8E-06 2.3E-10 94.1 3.3 60 19-78 763-832 (1342)
10 3h0g_B DNA-directed RNA polyme 89.0 0.08 2.8E-06 61.3 0.2 37 43-82 812-848 (1210)
11 1twf_B DNA-directed RNA polyme 86.8 0.12 4.1E-06 60.1 -0.2 37 43-82 823-859 (1224)
12 1gh9_A 8.3 kDa protein (gene M 85.3 0.51 1.7E-05 36.8 2.8 33 391-425 2-34 (71)
13 4ayb_B DNA-directed RNA polyme 78.8 0.42 1.4E-05 55.3 0.1 36 44-82 726-761 (1131)
14 1yuz_A Nigerythrin; rubrythrin 75.0 1.4 5E-05 40.8 2.6 29 389-420 167-195 (202)
15 1vq8_Z 50S ribosomal protein L 71.4 2.6 9E-05 33.7 3.0 28 392-419 26-53 (83)
16 1pft_A TFIIB, PFTFIIBN; N-term 59.4 5.5 0.00019 28.2 2.4 27 393-419 5-32 (50)
17 1lko_A Rubrerythrin all-iron(I 58.9 4.9 0.00017 36.7 2.7 30 389-420 151-180 (191)
18 3pwf_A Rubrerythrin; non heme 56.4 6.8 0.00023 35.2 3.1 26 392-420 137-162 (170)
19 1dl6_A Transcription factor II 54.3 6.4 0.00022 29.1 2.1 32 387-418 5-37 (58)
20 3cc2_Z 50S ribosomal protein L 52.3 8.6 0.00029 32.6 2.8 29 391-419 58-86 (116)
21 4a17_Y RPL37A, 60S ribosomal p 52.0 8.8 0.0003 31.9 2.8 29 391-419 34-62 (103)
22 3j21_i 50S ribosomal protein L 49.8 7.7 0.00026 31.0 2.0 28 392-419 34-61 (83)
23 3iz5_m 60S ribosomal protein L 44.1 8.1 0.00028 31.5 1.4 29 391-419 34-62 (92)
24 3jyw_9 60S ribosomal protein L 43.3 7.7 0.00026 30.2 1.1 28 392-419 25-52 (72)
25 1ffk_W Ribosomal protein L37AE 42.8 9.6 0.00033 29.7 1.5 30 390-419 24-53 (73)
26 2k4x_A 30S ribosomal protein S 41.5 8.7 0.0003 28.2 1.1 27 393-419 18-44 (55)
27 3izc_m 60S ribosomal protein R 40.6 9.9 0.00034 31.0 1.4 29 391-419 34-62 (92)
28 3j20_Y 30S ribosomal protein S 37.2 21 0.0007 25.6 2.5 26 393-418 19-44 (50)
29 2kn9_A Rubredoxin; metalloprot 36.7 18 0.00063 28.7 2.3 30 391-420 25-69 (81)
30 1twf_I B12.6, DNA-directed RNA 36.6 14 0.00048 31.3 1.8 27 393-419 4-34 (122)
31 2v3b_B Rubredoxin 2, rubredoxi 35.3 18 0.00061 26.5 1.9 29 392-420 2-45 (55)
32 3j21_g 50S ribosomal protein L 32.6 16 0.00056 26.4 1.3 25 392-420 13-37 (51)
33 3h0g_I DNA-directed RNA polyme 30.6 21 0.0007 29.8 1.8 27 393-419 4-34 (113)
34 2hf1_A Tetraacyldisaccharide-1 29.8 33 0.0011 26.1 2.7 29 391-419 6-34 (68)
35 1dx8_A Rubredoxin; electron tr 29.5 19 0.00064 27.7 1.2 30 391-420 5-49 (70)
36 2js4_A UPF0434 protein BB2007; 29.4 33 0.0011 26.3 2.6 28 392-419 7-34 (70)
37 3qt1_I DNA-directed RNA polyme 29.3 15 0.00051 31.8 0.7 33 387-419 18-54 (133)
38 1yk4_A Rubredoxin, RD; electro 28.2 26 0.0009 25.3 1.8 28 393-420 2-44 (52)
39 1zbd_B Rabphilin-3A; G protein 27.4 16 0.00056 31.5 0.6 29 392-420 79-107 (134)
40 3a43_A HYPD, hydrogenase nicke 27.3 24 0.00081 30.5 1.7 45 361-405 31-82 (139)
41 2gmg_A Hypothetical protein PF 27.3 19 0.00067 29.9 1.0 27 393-420 67-93 (105)
42 2jr6_A UPF0434 protein NMA0874 27.1 34 0.0012 26.1 2.3 28 392-419 7-34 (68)
43 2jny_A Uncharacterized BCR; st 26.1 33 0.0011 26.1 2.1 28 392-419 9-36 (67)
44 1s24_A Rubredoxin 2; electron 25.6 31 0.0011 27.7 1.9 30 391-420 33-77 (87)
45 1x3z_A Peptide: N-glycanase; h 25.5 1E+02 0.0034 30.7 6.0 41 410-450 154-206 (335)
46 6rxn_A Rubredoxin; electron tr 25.4 24 0.00083 24.9 1.1 29 392-420 3-39 (46)
47 2apo_B Ribosome biogenesis pro 24.7 28 0.00097 26.0 1.4 24 392-421 5-28 (60)
48 2xzf_A Formamidopyrimidine-DNA 23.2 34 0.0012 32.8 2.1 25 395-419 244-270 (271)
49 2pk7_A Uncharacterized protein 23.0 42 0.0015 25.6 2.2 28 392-419 7-34 (69)
50 1ee8_A MUTM (FPG) protein; bet 22.3 39 0.0013 32.3 2.3 25 395-419 237-263 (266)
51 4rxn_A Rubredoxin; electron tr 21.8 39 0.0013 24.7 1.7 29 392-420 2-45 (54)
52 1twf_L ABC10-alpha, DNA-direct 21.0 30 0.001 26.5 1.0 27 392-419 27-53 (70)
53 3m7n_A Putative uncharacterize 20.9 40 0.0014 30.2 1.9 34 394-430 141-174 (179)
54 1k82_A Formamidopyrimidine-DNA 20.7 39 0.0013 32.3 1.9 24 395-418 242-267 (268)
55 1e8j_A Rubredoxin; iron-sulfur 20.5 32 0.0011 24.8 1.0 28 393-420 3-45 (52)
56 3u6p_A Formamidopyrimidine-DNA 20.2 40 0.0014 32.3 1.9 24 395-418 247-272 (273)
No 1
>1twf_B DNA-directed RNA polymerase II 140 kDa polypeptid; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.1 PDB: 1i3q_B 1i6h_B 1k83_B* 1nik_B 1nt9_B 1pqv_B 1r5u_B 1r9s_B* 1r9t_B* 1sfo_B* 1twa_B* 1twc_B* 1i50_B* 1twg_B* 1twh_B* 1wcm_B 1y1v_B 1y1w_B 1y1y_B 1y77_B* ...
Probab=100.00 E-value=3e-123 Score=1064.67 Aligned_cols=404 Identities=66% Similarity=1.119 Sum_probs=360.3
Q ss_pred CcccccCcccCCccceEeccCCCccceeccccccccCCCCCCcceeeeeeeeecccCCCCcEEeccceeccceEeeeccc
Q psy7583 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSMEYL 80 (451)
Q Consensus 1 ~G~~~~n~~~R~D~~~~~L~yPQ~Plv~T~~~~~~~~d~~p~G~NaiVAV~sytgynqed~~~~n~~~i~rG~~r~~~~~ 80 (451)
||++.+|+..|+|+..|+|+|||+|||+|+.+++++++++|+||||+|||
T Consensus 778 ~g~~~~n~~~r~dt~~~~l~ypQkPlV~t~~~~~~~~~elp~G~N~iVAv------------------------------ 827 (1224)
T 1twf_B 778 MGVFLTNYNVRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAI------------------------------ 827 (1224)
T ss_dssp CBCSCTTTTTCCCSEEEEESSCBCCSEECTTHHHHTTTTSCCCEEEEEEE------------------------------
T ss_pred cccccceeeeecccccceeecCcCCeEEcccccccccccCCCCeeEEEEE------------------------------
Confidence 79999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCcceEEEEeeccccccccceeeccceeccCceeEEEEEEEEeeecccCCCcceeeecCCcccccCCchhhhhc
Q psy7583 81 RFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDK 160 (451)
Q Consensus 81 ~~~el~~G~N~~Va~msy~GYn~EDAiIiNkssidRG~f~s~~~k~~~~~~~~~~~~~~~~f~~P~~~~~~~~~~~~~~~ 160 (451)
|||+||||||||||||+|++||+|||+||++|++++++...+.++.|++|+.+.+++.+...|++
T Consensus 828 ---------------m~y~GYN~EDAiIin~~sv~rg~~~s~~~~~y~~~~~~~~~~~~e~~~~P~~~~~~~~~~~~~~~ 892 (1224)
T 1twf_B 828 ---------------ACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDK 892 (1224)
T ss_dssp ---------------CBSSSTTTTTEEEEEHHHHHTTTTCEEEEEEEEECCCCSCTTCCCEESCCCCSSSCBCCSSCGGG
T ss_pred ---------------ecccCcccchhhhhhhhHHhcCCeeEEEEEEEEEEeeeCCCCceeEecCCChhhccCccHHHHhh
Confidence 99999999999999999999999999999999999888666778899999876677777788999
Q ss_pred cCcCCCcccCcEEeCCCEEEEEeeecCCCCccccccccccccceeeEEecCCcceEEEEEEEEeccCCeeEEEEEEeecC
Q psy7583 161 LDDDGIIAPGLRVSGDDVVIGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240 (451)
Q Consensus 161 LD~dGi~~vG~~v~~gDiligK~~~~~~~~~~~~~~~~~~~~~d~s~~~~~~e~g~Vd~V~i~~~~~g~~~vkv~ir~~R 240 (451)
||+||||+||++|++|||||||++|..+.+.++....+...++|+|++++++|+|+||+|.++.+.+|.+.|||++|++|
T Consensus 893 LD~dGiv~~G~~V~~gDilvgK~~p~~~~~~~~~~~~~~~~~rd~s~~~~~~e~g~Vd~V~~~~~~~g~~~vkV~ir~~R 972 (1224)
T 1twf_B 893 LDDDGLIAPGVRVSGEDVIIGKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLVTTNQDGLKFVKVRVRTTK 972 (1224)
T ss_dssp CCTTSBCCTTCEECTTCEEECEECCCC-------------CCBBCCEECCTTCCEEEEEEEEEECSSSCEEEEEEEEEEE
T ss_pred cccCCccCCccEecCCCEEEEEecCCCccccccccccccCccceeEEEeeCCCCeEEEEEEEEecCCCCEEEEEEEEecC
Confidence 99999999999999999999999998654333333334457899999999999999999999999999999999999999
Q ss_pred CCccccccccccCCccEEeeeehhh------------------------------------HhhhcCCceeecCCCCccc
Q psy7583 241 IPQIGDKFASRHGQKGTCGIQYRQE------------------------------------VSSNKGEIGDATPFNDAVN 284 (451)
Q Consensus 241 ~p~IGDKFsSRHGQKGvvs~i~~~e------------------------------------~~~~~G~~~d~tpF~~~~~ 284 (451)
+|+||||||||||||||||+||||| +|++.|.+.|+|||++. +
T Consensus 973 ~p~iGDKfasRHGqKGvis~i~p~eDMPf~~dG~~pDiIiNPhg~PSRMtiGqllE~~lgka~~~~G~~~datpF~~~-~ 1051 (1224)
T 1twf_B 973 IPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSKVAALSGNEGDASPFTDI-T 1051 (1224)
T ss_dssp CCCTTCEEECTTSCEEEEEEEECTTTSCEETTSCCCSEEECGGGSTTTTCHHHHHHHHHHHHHHHHCSCEECCSSSSC-C
T ss_pred CCCchhhhhhhccCcceeeeecccccCCcCCCCCCccEEeCCCcCccccccchhHHHHhhHHHHhcCceeecCCCCCc-c
Confidence 9999999999999999999999999 57889999999999987 9
Q ss_pred HHHHHHHHHHhCCCCCCcEEEEcCccCceeeeeeeeeeeeEeeeccccCceeeeeeccCeeeeeecCCCcccccCccccc
Q psy7583 285 VQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFG 364 (451)
Q Consensus 285 ~~~~~~~l~~~g~~~~g~~~~~~g~tG~~~~~~i~~G~~yy~rL~Hmv~dK~~~R~~G~~~~lt~Qp~~Gr~~~Gg~r~G 364 (451)
++++++.|+++||+++|+|.||||+||++|+++||+|++|||||+|||+||+||||+||++.|||||++||+++||||||
T Consensus 1052 ~~~i~~~L~~~g~~~~G~e~ly~G~TG~~~~~~i~vG~~YyqkL~HmV~DKihaRs~GP~~~lT~QP~~Gr~r~GG~RfG 1131 (1224)
T 1twf_B 1052 VEGISKLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFG 1131 (1224)
T ss_dssp HHHHHHHHHTTTSCTTSEECEECTTTCCBCSSCEEEEEEEEEEBSSCGGGTCEEECCCC----------------CCCCC
T ss_pred HHHHHHHHHHcCCCCCCCEEeecCCCCCCccceEEEehhHhhcchhhcccCceEEeeCCCcccccCCCcccccCCceecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHhcchhHHHHHhhcccCCceeeeeeccccce-EEeecccceeEeccCCCCCccceecCchhHHHHHHHHHhCC
Q psy7583 365 EMERDCQISHGAAQFLRERLFEVSDPYRIHVCNFCGLI-AIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMN 443 (451)
Q Consensus 365 EME~~~l~~~g~~~~l~e~l~~~SD~~~~~vC~~CG~~-~~~~~~~~~~~C~~C~~~~~~~~v~iPy~~klL~~EL~sm~ 443 (451)
|||||||+|||||++|+|||+.+||.+.++||..||++ ++.+..++.++|+.|+++.++..+.||||||||+|||+|||
T Consensus 1132 EMErd~L~a~Gaa~~L~ErL~~~SD~~~~~vC~~cG~~~~~~~~~~~~~~c~~c~~~~~i~~~~iPysfklL~~EL~sm~ 1211 (1224)
T 1twf_B 1132 EMERDCMIAHGAASFLKERLMEASDAFRVHICGICGLMTVIAKLNHNQFECKGCDNKIDIYQIHIPYAAKLLFQELMAMN 1211 (1224)
T ss_dssp HHHHHHHHHHTCHHHHHHHHCCSSCCCEEEEESSSCSSCCEEETTTTEEEBTTTTBSSSEEEEECCHHHHHHHHHHHHTT
T ss_pred hhhhhhHHhccHHHHHHHHHhcCCccceeEeeccCCCeeeecccccCceECCcCCCCCccccccCCHhHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999 77666677889999988888999999999999999999999
Q ss_pred cccEEEE
Q psy7583 444 IAPRLMV 450 (451)
Q Consensus 444 I~~r~~~ 450 (451)
|++||.+
T Consensus 1212 i~~~l~~ 1218 (1224)
T 1twf_B 1212 ITPRLYT 1218 (1224)
T ss_dssp BCCEEES
T ss_pred CeeEEEe
Confidence 9999975
No 2
>3h0g_B DNA-directed RNA polymerase II subunit RPB2; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.2e-122 Score=1051.43 Aligned_cols=404 Identities=67% Similarity=1.119 Sum_probs=376.3
Q ss_pred CcccccCcccCCccceEeccCCCccceeccccccccCCCCCCcceeeeeeeeecccCCCCcEEeccceeccceEeeeccc
Q psy7583 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSMEYL 80 (451)
Q Consensus 1 ~G~~~~n~~~R~D~~~~~L~yPQ~Plv~T~~~~~~~~d~~p~G~NaiVAV~sytgynqed~~~~n~~~i~rG~~r~~~~~ 80 (451)
||+|++||+.|+||++|+|+|||+|||+|+++|+++|+++|+||||+|||
T Consensus 767 mG~~~~n~~~R~Dt~~~~L~yPQkPlv~T~~~e~~~~~elp~G~NaiVAv------------------------------ 816 (1210)
T 3h0g_B 767 MGVYLTNYQVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAI------------------------------ 816 (1210)
T ss_dssp CSCCCTTTTTSCCSSEEEESSCBCCSSBCTTSTTTTCTTSCSCCEECBEE------------------------------
T ss_pred ccccccccccccCccccEeecCcCccccchhHHHhCCCcccCccceEEEE------------------------------
Confidence 89999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCcceEEEEeeccccccccceeeccceeccCceeEEEEEEEEeeecccCCCcceeeecCCcccccCCchhhhhc
Q psy7583 81 RFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDK 160 (451)
Q Consensus 81 ~~~el~~G~N~~Va~msy~GYn~EDAiIiNkssidRG~f~s~~~k~~~~~~~~~~~~~~~~f~~P~~~~~~~~~~~~~~~ 160 (451)
|||+||||||||||||+|+|||||||+||++|++++++...+.++.|++|+.+...+++...|++
T Consensus 817 ---------------msy~GYn~EDAiIink~sv~rg~~~s~~~~~y~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 881 (1210)
T 3h0g_B 817 ---------------LCYSGYNQEDSIIMNQASIDRGLFRSIFYRTYTDQEKKIGMTVMEEFERPVRSTTLRMKHGTYDK 881 (1210)
T ss_dssp ---------------CCCSSSSCSSCEEEEHHHHTTTTTCEEEEEEEEECCCCCSSSCCCCCCCCCTTSCCSCCSCCGGG
T ss_pred ---------------eccCCCChhhheeeehhheecCceEEEEEEEEEEEeeecCCCceeEEcCCCcchhcccchhhHhh
Confidence 99999999999999999999999999999999999988777777899999876555566678999
Q ss_pred cCcCCCcccCcEEeCCCEEEEEeeecCCCCccccccccccccceeeEEecCCcceEEEEEEEEeccCCeeEEEEEEeecC
Q psy7583 161 LDDDGIIAPGLRVSGDDVVIGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240 (451)
Q Consensus 161 LD~dGi~~vG~~v~~gDiligK~~~~~~~~~~~~~~~~~~~~~d~s~~~~~~e~g~Vd~V~i~~~~~g~~~vkv~ir~~R 240 (451)
||+||||.||++|++|||||||++|.....+.+....+...++|+|++++++|+|+||+|.++.+.+|.+.|||++|++|
T Consensus 882 LD~dGi~~~G~~v~~gDiligK~~p~~~~~~~~~~~~~~~~~rd~s~~~~~~e~g~Vd~V~~~~~~~g~~~vkv~~~~~R 961 (1210)
T 3h0g_B 882 LEDDGLIAPGTRVSGEDIIIGKTAPIPLDHEELGQRTQLHAKRDVSTPLRSTESGIVDQVMVTTNQEGLKFVKVRMRSTR 961 (1210)
T ss_dssp CCTTSSCCTTCCCCTTCCCCCCCCCC-----------CCCCCCCCCCCCCTTCCCCCCEEEEEECSSSSEEEEEEECCCB
T ss_pred cCCCCCcCCCCEecCCCEEEEEecCCCCCchhhcccccccccceeeEEecCCCCeEEEEEEEEEecCCCeEEEEEEEEec
Confidence 99999999999999999999999997653333322223456799999999999999999999999999999999999999
Q ss_pred CCccccccccccCCccEEeeeehhh------------------------------------HhhhcCCceeecCCCCccc
Q psy7583 241 IPQIGDKFASRHGQKGTCGIQYRQE------------------------------------VSSNKGEIGDATPFNDAVN 284 (451)
Q Consensus 241 ~p~IGDKFsSRHGQKGvvs~i~~~e------------------------------------~~~~~G~~~d~tpF~~~~~ 284 (451)
+|+||||||||||||||||+||||| ++++.|.+.|+|||++. +
T Consensus 962 ~~~~GDK~a~RhGqKGvi~~i~~~edmPf~~~G~~pDii~NP~~~PSRMtigq~~E~~~g~~~~~~g~~~~~tpF~~~-~ 1040 (1210)
T 3h0g_B 962 IPQIGDKFASRHGQKGTIGMTYRHEDMPFSAQGIVPDIIINPHAIPSRMTVAHLVECQLSKVSALSGFEGDATPFTDV-T 1040 (1210)
T ss_dssp CCCTTCEEECTTCCCEEEEEEECTTTSCCBTTTBCCSEECCGGGSTTSCCHHHHHHHHHHHHSSSSCCCCBCCSSCSC-C
T ss_pred CCCchhhhhcccCCCceeeEEeccccCCcCCCCCCCeEEECCCcCCCCccchhhhHhHHHHHHHhcCCceeeccCCCC-c
Confidence 9999999999999999999999998 45778999999999987 9
Q ss_pred HHHHHHHHHHhCCCCCCcEEEEcCccCceeeeeeeeeeeeEeeeccccCceeeeeeccCeeeeeecCCCcccccCccccc
Q psy7583 285 VQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFG 364 (451)
Q Consensus 285 ~~~~~~~l~~~g~~~~g~~~~~~g~tG~~~~~~i~~G~~yy~rL~Hmv~dK~~~R~~G~~~~lt~Qp~~Gr~~~Gg~r~G 364 (451)
++++++.|.++||+++|+|.||||+||++|+++||+|++|||||+|||+||+|||++||++.|||||++||+++||||||
T Consensus 1041 ~~~~~~~l~~~g~~~~G~~~l~~g~tg~~~~~~i~~G~~yy~kL~Hmv~dK~h~r~~gp~~~~t~QP~~gr~~~GG~r~G 1120 (1210)
T 3h0g_B 1041 VEAVSKLLRSHGFQSRGFEVMYHGHTGRKLVAQVFLGPTYYQRLKHLVDDKIHARARGPVQILTRQPVEGRSRDGGLRFG 1120 (1210)
T ss_dssp HHHHHHHHHTTTSCTTSCBCCBCSSSCCBCSSCBEECCEECEECSCCSTTTCEECSSCCBCSSSCSBCCSSTTCCCCCCC
T ss_pred HHHHHHHHHHcCcCCCCCEEEEcCCCCCCccccEEEEehHhhcchhhcccCcEEeccCCCchhccCCcccccccCCeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHhcchhHHHHHhhcccCCceeeeeeccccceEEeecccceeEeccCCCCCccceecCchhHHHHHHHHHhCCc
Q psy7583 365 EMERDCQISHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444 (451)
Q Consensus 365 EME~~~l~~~g~~~~l~e~l~~~SD~~~~~vC~~CG~~~~~~~~~~~~~C~~C~~~~~~~~v~iPy~~klL~~EL~sm~I 444 (451)
|||+|||+||||+++|+|||+.+||.+.++||..||++++.+...+.++|+.|+++.++..+.||||||||+|||+||||
T Consensus 1121 EME~~~l~a~Gaa~~l~e~l~~~SD~~~~~vC~~cg~~~~~~~~~~~~~c~~c~~~~~i~~~~~p~~~k~l~~El~~~~i 1200 (1210)
T 3h0g_B 1121 EMERDCQISHGCSSVLRERLFDCSDAYRVIVCDICGLIAIASYKKDSYECRSCQNRTRFSQVYLPYAAKLLFQELMSMNI 1200 (1210)
T ss_dssp HHHHHHHHHHTBHHHHHHHHHTTTTCCEEEEESSSCCBCCCCSSSCCCCCTTTCCSSCEEEEECCHHHHHHHHHHHTTTC
T ss_pred hhhhhhhhhccHHHHHHHHhhcCCCcceeEeecCCCCeeeecccCCceEcCccCCCCccceecCCHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999987766778899999999999999999999999999999999
Q ss_pred ccEEEE
Q psy7583 445 APRLMV 450 (451)
Q Consensus 445 ~~r~~~ 450 (451)
.+||.+
T Consensus 1201 ~~rl~~ 1206 (1210)
T 3h0g_B 1201 APRLFT 1206 (1210)
T ss_dssp CEECCC
T ss_pred ceEEEe
Confidence 999875
No 3
>4ayb_B DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_B 2y0s_B 2waq_B 4b1o_B 4b1p_R 2pmz_B 3hkz_B
Probab=100.00 E-value=9.6e-119 Score=1028.61 Aligned_cols=403 Identities=46% Similarity=0.805 Sum_probs=373.3
Q ss_pred CcccccCcccCCccceEeccCCCccceeccccccccCCCCCCcceeeeeeeeecccCCCCcEEeccceeccceEeeeccc
Q psy7583 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSMEYL 80 (451)
Q Consensus 1 ~G~~~~n~~~R~D~~~~~L~yPQ~Plv~T~~~~~~~~d~~p~G~NaiVAV~sytgynqed~~~~n~~~i~rG~~r~~~~~ 80 (451)
||++++|++.|+|+++|+|+|||+|||+|+.++.++++++|+|+||+||+
T Consensus 680 ~G~~~~~~~~r~D~~~~~l~ypQ~PlV~t~~~~~~~~~e~p~G~N~lVA~------------------------------ 729 (1131)
T 4ayb_B 680 LGLYAANYQLRTDTRAHLLHYPQRPLVQTRALDIIGYTNRPAGNNAILAV------------------------------ 729 (1131)
T ss_dssp CSCCCGGGGTCCCSEEEEESSCCCCSSBCHHHHHHTCTTSCCSEEEEEEE------------------------------
T ss_pred CCceeecceeeeccccceeecCCccccccchhhhhccCCCCCceeEEEEE------------------------------
Confidence 79999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCcceEEEEeeccccccccceeeccceeccCceeEEEEEEEEeeecccCCCcceeeecCCcccccCCchhhhhc
Q psy7583 81 RFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDK 160 (451)
Q Consensus 81 ~~~el~~G~N~~Va~msy~GYn~EDAiIiNkssidRG~f~s~~~k~~~~~~~~~~~~~~~~f~~P~~~~~~~~~~~~~~~ 160 (451)
|||+||||||||||||++++||+|||+||++|++++++++.+.+|.++.|.++......+..+++
T Consensus 730 ---------------m~w~GYN~EDAIIine~~v~rg~ftSihi~~y~~e~r~~~~g~~e~it~~~p~v~~~~~~~~~~~ 794 (1131)
T 4ayb_B 730 ---------------ISFTGYNMEDSIIMNRSSVERGMYRSTFFRLYSTEEVKYPGGQEDKIVMPEPGVRGYKGKEYYRL 794 (1131)
T ss_dssp ---------------CCCSSCCCTTCEEEEHHHHTTTTTCEEEEEEEEEECCCCTTSCCCCCCCCCSSCSSCCCGGGGTT
T ss_pred ---------------EccCCccHHHhhhhhcchhhcccceeeEEEEEEEEEEecCCCCceEEecCCccccccchHHHhhc
Confidence 99999999999999999999999999999999999999888888878776654332234668999
Q ss_pred cCcCCCcccCcEEeCCCEEEEEeeecCCCCccccccccccccceeeEEecCCcceEEEEEEEEeccCCeeEEEEEEeecC
Q psy7583 161 LDDDGIIAPGLRVSGDDVVIGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240 (451)
Q Consensus 161 LD~dGi~~vG~~v~~gDiligK~~~~~~~~~~~~~~~~~~~~~d~s~~~~~~e~g~Vd~V~i~~~~~g~~~vkv~ir~~R 240 (451)
||+||||++|++|++|||||||++|...... +..-.....++|+|++++++|.|+||.|.++.+.+|++.|||++|+.|
T Consensus 795 LDe~Gii~iGa~V~~gDilvGKvtP~~~~~~-~~~~~~~~~~~d~sl~~~~g~~g~Vd~v~~~~~~~~~~~vkV~i~~~R 873 (1131)
T 4ayb_B 795 LEDNGVVSPEVEVKGGDVLIGKVSPPRFLQE-FKELSPEQAKRDTSIVTRHGEMGIVDLVLITETAEGNKLVKVRVRDLR 873 (1131)
T ss_dssp CCTTSBCCTTCEECTTCEEECCCCCCC------------CCCCCCCEECCTTCCEEEEEEEEEECSSSCEEEEEEEEEEE
T ss_pred CCccccccCCcEecCCCEEEEEecCCcchhh-hhhcCcceeeeeeeEEccCCCceEEEEEEEeeccCCceEEEEEEeccc
Confidence 9999999999999999999999999653211 110011124589999999999999999999999999999999999999
Q ss_pred CCccccccccccCCccEEeeeehhh------------------------------------HhhhcCCceeecCCCCccc
Q psy7583 241 IPQIGDKFASRHGQKGTCGIQYRQE------------------------------------VSSNKGEIGDATPFNDAVN 284 (451)
Q Consensus 241 ~p~IGDKFsSRHGQKGvvs~i~~~e------------------------------------~~~~~G~~~d~tpF~~~~~ 284 (451)
+|+||||||||||||||||+|||+| ++++.|.+.|+|||.+. .
T Consensus 874 ~~~vGDK~agRHGnKGvvs~i~p~eDMPf~~dG~~~DiilNP~gvPSRMniGqilE~~~gk~~~~~g~~~~atpf~~~-~ 952 (1131)
T 4ayb_B 874 IPSIGDKFASRHGQKGVIGMLIPQVDMPYTVKGVVPDVILNPHALPSRMTLGQIMEGIAGKYAALSGNIVDATPFYKT-P 952 (1131)
T ss_dssp CCCTTCEEEETTSCEEEEEEEECTTTSEEETTSCCCSEECCTTSSTTTTCHHHHHHHHHHHHHHHHCCCCBCCTTSSC-C
T ss_pred cCcccccccccccccceeeeecccccCCcCCCCCCccEEECCCCCcccCcHHHHHHHHHHHHHHhCCCceecCccCCC-c
Confidence 9999999999999999999999999 46789999999999987 8
Q ss_pred HHHHHHHHHHhCCCCCCcEEEEcCccCceeeeeeeeeeeeEeeeccccCceeeeeeccCeeeeeecCCCcccccCccccc
Q psy7583 285 VQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFG 364 (451)
Q Consensus 285 ~~~~~~~l~~~g~~~~g~~~~~~g~tG~~~~~~i~~G~~yy~rL~Hmv~dK~~~R~~G~~~~lt~Qp~~Gr~~~Gg~r~G 364 (451)
.+++.+.|.++||+++|+|.||||+|||+|+++||||++|||||+|||+||+||||+|||++|||||++||+++||||||
T Consensus 953 ~e~~~~~l~~~g~~~~g~~~lydG~TGe~~~~~i~vG~~Yy~kL~HmV~DKihaRs~GP~s~~TqQPl~Gra~~GG~RfG 1032 (1131)
T 4ayb_B 953 IEQLQNEILKYGYLPDATEVTYDGRTGQKIKSRIYFGVVYYQKLHHMVADKIHARARGPVQILTRQPTEGRAREGGLRFG 1032 (1131)
T ss_dssp THHHHHHHHHTTSCTTSEECEEETTTCCBCSSCEEEEEEEEEEBSCCHHHHCEEESSCCBCTTTCCBCSSGGGTCCCEEC
T ss_pred HHHHHHHHHHcCCCCCCCEEEeCCCCCCEecCcEEEEhhhhhccchhhccCCEeeccCCCCCcccCCCCCcccCCCccee
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHhcchhHHHHHhhcccCCceeeeeeccccceEEeecccceeEeccCCCCCccceecCchhHHHHHHHHHhCCc
Q psy7583 365 EMERDCQISHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444 (451)
Q Consensus 365 EME~~~l~~~g~~~~l~e~l~~~SD~~~~~vC~~CG~~~~~~~~~~~~~C~~C~~~~~~~~v~iPy~~klL~~EL~sm~I 444 (451)
|||+|||+|||||++|+|||+.+||.+.++||..||++++++...+.+.|+.|+++.++..+.||||||||+|||+||||
T Consensus 1033 EME~~aL~a~Gaa~~LqE~L~~~SD~~~~~vc~~cG~~~~~~~~~~~~~c~~~~~~~~i~~~~iP~sfk~L~~EL~sm~i 1112 (1131)
T 4ayb_B 1033 EMERDCLIGFGTAMLLKDRLLDNSDRTTIYVCDQCGYIGWYDKNKNKYVCPIHGDKSNLFPVTVSYAFKLLIQELMSMII 1112 (1131)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTTTTCEEEEEECSSSCCBCEEETTTTEEECSSCSSSSCCEEEEEEHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHhHHHHHHHHhhccCCccceeeccCCCceEEEeccCCceeCCccCCCCCccccCCCHHHHHHHHHHHHCCc
Confidence 99999999999999999999999999999999999999999877788899999998899999999999999999999999
Q ss_pred ccEEEE
Q psy7583 445 APRLMV 450 (451)
Q Consensus 445 ~~r~~~ 450 (451)
++||.+
T Consensus 1113 ~~~l~~ 1118 (1131)
T 4ayb_B 1113 SPRLIL 1118 (1131)
T ss_dssp EEEEEE
T ss_pred ceEEEe
Confidence 999975
No 4
>2a6h_C DNA-directed RNA polymerase beta chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.1 PDB: 1smy_C* 1zyr_C* 1iw7_C* 2a69_C* 2a6e_C 2a68_C* 2be5_C* 2cw0_C 2o5i_C 2o5j_C* 2ppb_C* 3aoh_C* 3aoi_C* 3dxj_C* 3eql_C* 1ynj_C* 1ynn_C* 2gho_C 1hqm_C 1l9u_C ...
Probab=100.00 E-value=3.3e-105 Score=902.20 Aligned_cols=384 Identities=28% Similarity=0.436 Sum_probs=330.8
Q ss_pred CcccCCc---cceEec----------cCCCccceeccccccccCCCCCCcceeeeeeeeecccCCCCcEEeccceeccc-
Q psy7583 7 NFHVRMD---TLAHVL----------YYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERG- 72 (451)
Q Consensus 7 n~~~R~D---~~~~~L----------~yPQ~Plv~T~~~~~~~~d~~p~G~NaiVAV~sytgynqed~~~~n~~~i~rG- 72 (451)
++..|+| ++.|.| .|||+|||+|+.+- +.|
T Consensus 610 ~i~ir~~~~~~~~y~L~~~~rsnq~t~~~QkPiV~~g~~v------------------------------------~~g~ 653 (1119)
T 2a6h_C 610 RIVVRYEDGRLVEYPLRRFYRSNQGTALDQRPRVVVGQRV------------------------------------RKGD 653 (1119)
T ss_dssp BEEEEETTTEEECCBCCCSEECTTSCEECCEECCCSSCCB------------------------------------CTTC
T ss_pred eEEEEccCCcceeEEeeccccccccccccccceEeeCcee------------------------------------eccc
Confidence 3446663 467877 78999999996531 112
Q ss_pred eEeeeccccccccCCCcceEEEEeeccccccccceeeccceeccCceeEEEEEEEEeeecccCCCcceee-ecCCccccc
Q psy7583 73 YFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFRSYKDAESKRIGDQEEQF-EKPNRQTCQ 151 (451)
Q Consensus 73 ~~r~~~~~~~~el~~G~N~~Va~msy~GYn~EDAiIiNkssidRG~f~s~~~k~~~~~~~~~~~~~~~~f-~~P~~~~~~ 151 (451)
..+++.++++||+|+|+|++||||||+||||||||||||++++||+|||+|+++|+.+.+.++.+.++.. ..|+
T Consensus 654 ~ladg~~~~~gel~lG~N~lVA~m~~~GYN~EDAiiine~~v~rg~~tSihi~~~e~~~r~~~~g~eeit~~ip~----- 728 (1119)
T 2a6h_C 654 LLADGPASENGFLALGQNVLVAIMPFDGYNFEDAIVISEELLKRDFYTSIHIERYEIEARDTKLGPERITRDIPH----- 728 (1119)
T ss_dssp EEEECTTBSSSSBCCSEEEEEECSCCSSTTSSSEEEEETHHHHTTCSEEEEEEEEEEEEECCTTCCCBCCSCCSS-----
T ss_pred eeccccccCCCcccCceeEEEEEecccCCcchhhhhhhhhHHhcCCceEEEEEEEEeeeeecCCCceeeeccCCC-----
Confidence 2467777888888888888888899999999999999999999999999999999999888777766522 2443
Q ss_pred CCchhhhhccCcCCCcccCcEEeCCCEEEEEeeecCCCCccccc-------cccccccceeeEEecCCcceEEEEEEEEe
Q psy7583 152 GMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENEDELEG-------TTKRFSKRDGSTFLRNSETGIVDQVMLTL 224 (451)
Q Consensus 152 ~~~~~~~~~LD~dGi~~vG~~v~~gDiligK~~~~~~~~~~~~~-------~~~~~~~~d~s~~~~~~e~g~Vd~V~i~~ 224 (451)
.....|++||+||||+||++|++|||||||++|..+.+.+.+. ..+....+|+|++++++|+|+||+|.++.
T Consensus 729 -~~~~~~~~LD~dGiv~iG~~V~~gDiLvgK~tP~~~~~~~~ee~ll~aifg~k~~~~rd~Sl~~~~~e~G~V~~V~~~~ 807 (1119)
T 2a6h_C 729 -LSEAALRDLDEEGVVRIGAEVKPGDILVGRTSFKGESEPTPEERLLRSIFGEKARDVKDTSLRVPPGEGGIVVRTVRLR 807 (1119)
T ss_dssp -SCSGGGSSCCSSSBCCTTCBCCTTSEEECCEEESSSSSCCHHHHHHHHHHHSCCCCEEECCEECCSSCCCEEEEEEEEC
T ss_pred -cchhhhhccCCCcccCCCCEECCCCEEEEEecCCccccCChhhhhhhhhhcccccccceeeEEccCCccEEEEEEEEEc
Confidence 2356799999999999999999999999999998643221110 01334679999999999999999999998
Q ss_pred ccC-C-------eeEEEEEEeecCCCccccccccccCCccEEeeeehhh-------------------------------
Q psy7583 225 NVD-G-------YKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQE------------------------------- 265 (451)
Q Consensus 225 ~~~-g-------~~~vkv~ir~~R~p~IGDKFsSRHGQKGvvs~i~~~e------------------------------- 265 (451)
+.+ | .+.|||++|++|+|+||||||||||||||||+|||+|
T Consensus 808 ~~~~g~~l~~~~~~~vkV~i~~~R~~~vGDKfasRHGqKGVis~i~p~eDMPf~~dG~~pDiIlNPhgvPSRMtiGqllE 887 (1119)
T 2a6h_C 808 RGDPGVELKPGVREVVRVYVAQKRKLQVGDKLANRHGNKGVVAKILPVEDMPHLPDGTPVDVILNPLGVPSRMNLGQILE 887 (1119)
T ss_dssp SSCSSCCCCTTEEEEEEEEEEEEEECCTTCEEECTTSCEEEEEEEECTTTSCBCSSSCBCSEECCSTTTTTTTBTHHHHH
T ss_pred cCCCCcccCCCcceEEEEEEcccCCcccCchhhhccCCCceEEeeeccCCCccccCCCCccEEeCCCcCccccchhhhhH
Confidence 776 6 3789999999999999999999999999999999999
Q ss_pred -----HhhhcCCceeecC-CCCcccHHHHHHHHHHh-----------------------------CC-------------
Q psy7583 266 -----VSSNKGEIGDATP-FNDAVNVQKISTLLQEY-----------------------------GY------------- 297 (451)
Q Consensus 266 -----~~~~~G~~~d~tp-F~~~~~~~~~~~~l~~~-----------------------------g~------------- 297 (451)
+|++.|... +|| |++. +.+++++.|.++ ||
T Consensus 888 ~~lG~a~~~~g~~~-atp~F~~~-~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 965 (1119)
T 2a6h_C 888 THLGLAGYFLGQRY-ISPIFDGA-KEPEIKELLAQAFEVYFGKRKGEGFGVDKREVEVLRRAEKLGLVTPGKTPEEQLKE 965 (1119)
T ss_dssp HHHHHHHHHTTEEE-ECCTTTSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCBHHHHHHHHHHHTTTSSCTTSCHHHHHHH
T ss_pred HHhhhHHhhcCCce-EecccCCC-CHHHHHHHHHHhhhhccccccccccccchhhhhhhhhhhcCCcccccccchhhhcc
Confidence 456778776 999 9887 899999999999 99
Q ss_pred -CCCCcEEEEcCccCceeeeeeeeeeeeEeeeccccCceeeeeeccCeeeeeecCCCcccccCccccchhhHHHHHhcch
Q psy7583 298 -QLRGNEVMFNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGA 376 (451)
Q Consensus 298 -~~~g~~~~~~g~tG~~~~~~i~~G~~yy~rL~Hmv~dK~~~R~~G~~~~lt~Qp~~Gr~~~Gg~r~GEME~~~l~~~g~ 376 (451)
+++|++.||||+|||+|+++||+|++|||||+|||+||+||||+||++.|||||++||+++|||||||||+|||+||||
T Consensus 966 ~~~~Gk~~lydG~TGe~~~~~I~vG~~Yy~kL~HmVdDKihaRs~GP~s~lTqQP~~Gra~~GGqRfGEME~~aL~a~GA 1045 (1119)
T 2a6h_C 966 LFLQGKVVLYDGRTGEPIEGPIVVGQMFIMKLYHMVEDKMHARSTGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGA 1045 (1119)
T ss_dssp HHHTTEECCBCSSSCCBCSSCEEEEEEEEEEBCCCTTTSCEEESSCCBCSSSCSBCCCSSSCCCEEECHHHHHHHHHTTC
T ss_pred cCCCCceEeecCCCCCCccceEEEEhHHhhcchhhcccCcEEeeccccceeecCCCcccccCCCeeeehhehhhhhhccH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhcccCCceeeeeeccccceEEeecccceeEeccCCCCCccceecCchhHHHHHHHHHhCCcccEEEE
Q psy7583 377 AQFLRERLFEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMV 450 (451)
Q Consensus 377 ~~~l~e~l~~~SD~~~~~vC~~CG~~~~~~~~~~~~~C~~C~~~~~~~~v~iPy~~klL~~EL~sm~I~~r~~~ 450 (451)
|++|+|||+.+||++. |.. ..| |..|+ +.++..+.+|||||||+|||+||||++++.+
T Consensus 1046 a~~L~E~L~~kSD~~~-------gr~-------~~~-~~~~~-~~~i~~~~iP~sfk~L~~EL~sl~i~~~l~~ 1103 (1119)
T 2a6h_C 1046 AHTLQEMLTLKSDDIE-------GRN-------AAY-EAIIK-GEDVPEPSVPESFRVLVKELQALALDVQTLD 1103 (1119)
T ss_dssp SHHHHHHHTTTTTCHH-------HHH-------HHH-HHHHT-TCCCCCCCCCHHHHHHHHHHHHSSCEECCBC
T ss_pred HHHHHHHhccCCcccc-------ccc-------ceE-EEeec-CCccCccCCCHHHHHHHHHHHhCCCceEEEe
Confidence 9999999999999974 321 223 55564 4578899999999999999999999999864
No 5
>3lu0_C DNA-directed RNA polymerase subunit beta; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_C*
Probab=100.00 E-value=5.7e-101 Score=862.91 Aligned_cols=411 Identities=28% Similarity=0.354 Sum_probs=346.0
Q ss_pred cceEeccCCCccceeccc-------------cccccCCCCCCcceeeeee------------eee-----------cccC
Q psy7583 14 TLAHVLYYPHKPLVTTRS-------------MEYLRFRELPAGINSIVAI------------LCY-----------TGYN 57 (451)
Q Consensus 14 ~~~~~L~yPQ~Plv~T~~-------------~~~~~~d~~p~G~NaiVAV------------~sy-----------tgyn 57 (451)
.++-.|..|++|||.|-. ++.-|.-.+-.+.|.+|.. -.| ||||
T Consensus 687 RQAVPLl~~e~p~VgTG~E~~~a~dsg~~i~a~~~G~v~~vda~~I~Ir~~~~~~~~~~~~~~~y~L~kf~RSNq~Tc~~ 766 (1342)
T 3lu0_C 687 RQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCIN 766 (1342)
T ss_dssp TTBCCCSSCCCCSSBCSCHHHHHHHTTTSCBCSSCBEECCCCSSBCCEEECSSSSSSSCCEEECCBCCCSCBCSSSCBCC
T ss_pred ccccccccCCCCeEecccchheeecCCceEEecCCCEEEEecCCeEEEEeCCCccccccCcceEEEeccccccccccccc
Confidence 367789999999999932 1222222333344444432 122 6888
Q ss_pred CCCcEEeccceeccceEeeeccccccccCCCcceEEEEeeccccccccceeeccceeccCceeEEEEEEEEeeecccCCC
Q psy7583 58 QEDSVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFRSYKDAESKRIGD 137 (451)
Q Consensus 58 qed~~~~n~~~i~rG~~r~~~~~~~~el~~G~N~~Va~msy~GYn~EDAiIiNkssidRG~f~s~~~k~~~~~~~~~~~~ 137 (451)
|.|.+..+..--+.-.+++++++++||||+|+|++||||+|.|||+|||||||++++++|+|||+|+++|+++.+.++.|
T Consensus 767 QrPiV~~G~~V~~GdilADG~st~~GElaLG~N~lVAfMpW~GYNfEDAIlISErlV~eD~fTSIHIee~e~~aRdtklG 846 (1342)
T 3lu0_C 767 QMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLG 846 (1342)
T ss_dssp CCBCCCSSCCBCTTCBCBCCSSCSSSSCCCSEECCEECCCCSSTTSSSEEEECTHHHHTTTSCEEEEEEEEEECCEETTE
T ss_pred ccceeecCCEEecCcEecccccccCCeeecccccEEEEecccCcccccchhhhhhhhhcCCceeEEEEEEeeeeeecCCC
Confidence 88888887753333389999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccee-eecCCcccccCCchhhhhccCcCCCcccCcEEeCCCEEEEEeeecCCCCcccccc---------ccccccceeeE
Q psy7583 138 QEEQ-FEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENEDELEGT---------TKRFSKRDGST 207 (451)
Q Consensus 138 ~~~~-f~~P~~~~~~~~~~~~~~~LD~dGi~~vG~~v~~gDiligK~~~~~~~~~~~~~~---------~~~~~~~d~s~ 207 (451)
.|+. ..+|+- .+..+++||++||+++|++|++|||||||++|..+.+ ++++ .+..+.+|+|+
T Consensus 847 ~EeiTrdIPnv------~e~al~~LDe~GIv~iGa~V~~GDILVGKvtPkge~~--~tpEekLLraIFGeka~~vkDtSL 918 (1342)
T 3lu0_C 847 PEEITADIPNV------GEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQ--LTPEEKLLRAIFGEKASDVKDSSL 918 (1342)
T ss_dssp ECCCCSCCSSC------CHHHHHSBCSSSCBCTTCCCCTTCEEECCCCBCCTTT--CCHHHHHGGGTSCSSSSSBCCCCE
T ss_pred CceecccCCCC------ChHHHhcCCCCCCeecCcEECCCCEEEeccCCCCCCc--CChHHHHHHHHhcCcccccccCcE
Confidence 8763 556653 4679999999999999999999999999999986422 1111 24457899999
Q ss_pred EecCCcceEEEEEEEEec--------------------------------------------------------------
Q psy7583 208 FLRNSETGIVDQVMLTLN-------------------------------------------------------------- 225 (451)
Q Consensus 208 ~~~~~e~g~Vd~V~i~~~-------------------------------------------------------------- 225 (451)
++++++.|+|.+|.+...
T Consensus 919 ~vp~g~~G~Vidv~~f~r~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~g~t~~~l~~~~~~~~~ 998 (1342)
T 3lu0_C 919 RVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWL 998 (1342)
T ss_dssp ECCTTCCCEEEECCCCCCGGGCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHTTSCGGGTT
T ss_pred ecCCCCcEEEEEEEEEecccccchhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHhhCCHHHhh
Confidence 999999999999865532
Q ss_pred ---------------------------------------------cCCeeEEEEEEeecCCCccccccccccCCccEEee
Q psy7583 226 ---------------------------------------------VDGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGI 260 (451)
Q Consensus 226 ---------------------------------------------~~g~~~vkv~ir~~R~p~IGDKFsSRHGQKGvvs~ 260 (451)
.+..+.|||++|+.|+|++|||||||||||||||+
T Consensus 999 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~gd~l~~gv~k~VkV~ia~kRk~qvGDK~AgRHGnKGVis~ 1078 (1342)
T 3lu0_C 999 ELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISK 1078 (1342)
T ss_dssp TCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCSSSSCEEEEEEEEEECCCTTCEEECSSSCCEEECC
T ss_pred ccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccCcCCceEEEEEEEEeccCCCCCCcccccCCCceEEE
Confidence 12467899999999999999999999999999999
Q ss_pred eehhh------------------------------------HhhhcCCc-------------------------------
Q psy7583 261 QYRQE------------------------------------VSSNKGEI------------------------------- 273 (451)
Q Consensus 261 i~~~e------------------------------------~~~~~G~~------------------------------- 273 (451)
|||+| +++..|..
T Consensus 1079 I~p~EDMPf~~dG~~pDIIlNP~gvPSRMnIGqilE~~lG~aa~~~G~~i~~~~~~~~~~~~~r~~~~~~y~~~~~~~~~ 1158 (1342)
T 3lu0_C 1079 INPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQK 1158 (1342)
T ss_dssp CCCTTTSCEETTEEECSEECCGGGTTSSCBTHHHHHHHHHHGGGTSSTHHHHTTTHHHHCTTTHHHHHHHTTTTCCCSSS
T ss_pred EecccCCCCCCCCCCCcEEeCCCCCCCccchhhhhHHhhhHHHHhcCchHHHHHHhhhhhHHHHHHHHHHhhcccccchh
Confidence 99999 33444532
Q ss_pred ----------------------eeecC-CCCcccHHHHHHHHHHhCCCCCCcEEEEcCccCceeeeeeeeeeeeEeeecc
Q psy7583 274 ----------------------GDATP-FNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQRLKH 330 (451)
Q Consensus 274 ----------------------~d~tp-F~~~~~~~~~~~~l~~~g~~~~g~~~~~~g~tG~~~~~~i~~G~~yy~rL~H 330 (451)
..||| |++. +.+++.+.|.++||+.+|++.||||+|||+|+++||||++|||||+|
T Consensus 1159 ~~~~~~~~~~~~~~~~~~~~g~~~aTPvFdga-~~~~i~~~L~~aG~~~~Gk~~LydGrTGe~f~~~V~vG~~YylKL~H 1237 (1342)
T 3lu0_C 1159 VDLSTFSDEEVMRLAENLRKGMPIATPVFDGA-KEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNH 1237 (1342)
T ss_dssp CCTTTSCHHHHHHTTTTTSSCTTCBCCSSSSC-CHHHHHHHTSSSSSCSSSCBCCBCSSSCSBCSSCBCEECCEEEEBCC
T ss_pred hhhcccchHHHHHHhhhhccCCcccCCCCCCC-CHHHHHHHHHHcCCCCCCCEEEEcCCCCCCcccceeeeehhHhhhhh
Confidence 12899 6555 89999999999999999999999999999999999999999999999
Q ss_pred ccCceeeeeeccCeeeeeecCCCcccccCccccchhhHHHHHhcchhHHHHHhhcccCCceeeeeeccccceEEeecccc
Q psy7583 331 MVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANMRNN 410 (451)
Q Consensus 331 mv~dK~~~R~~G~~~~lt~Qp~~Gr~~~Gg~r~GEME~~~l~~~g~~~~l~e~l~~~SD~~~~~vC~~CG~~~~~~~~~~ 410 (451)
||+||+||||+|||+.|||||++||+++|||||||||+|||+|||||++|+|||+.+||+. |..|.
T Consensus 1238 mVdDKiHaRs~GPysllTqQPl~Gkaq~GGqRfGEMEvwaL~a~GAa~~LqE~Lt~kSDdv----~gr~~---------- 1303 (1342)
T 3lu0_C 1238 LVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDV----NGRTK---------- 1303 (1342)
T ss_dssp CGGGSCCCBSSCCBCSSSCCBCCCSSSCCCCCCCHHHHHHHHHSSCSHHHHHHTTTSSSCH----HHHHH----------
T ss_pred ccccceEEeccCCCcccccCCCCccccCCCeeeehHHHHHHHhccHHHHHHHHhhcCCCcc----ccchh----------
Confidence 9999999999999999999999999999999999999999999999999999999999985 33332
Q ss_pred eeEeccCCCCCccceecCchhHHHHHHHHHhCCcccEEE
Q psy7583 411 TFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLM 449 (451)
Q Consensus 411 ~~~C~~C~~~~~~~~v~iPy~~klL~~EL~sm~I~~r~~ 449 (451)
. .|..|+ +.++..+.||||||+|++||+||||++++.
T Consensus 1304 ~-y~~i~~-g~~~~~~~iPesfkvL~~EL~sl~l~v~l~ 1340 (1342)
T 3lu0_C 1304 M-YKNIVD-GNHQMEPGMPESFNVLLKEIRSLGINIELE 1340 (1342)
T ss_dssp H-HHHHTT-TSCCCCCCCCHHHHHHHHHHHTSSCCEECC
T ss_pred h-hhhhcC-CCCCCcCCCCHHHHHHHHHHHhCCCCeEec
Confidence 1 255565 457889999999999999999999999874
No 6
>3tbi_B DNA-directed RNA polymerase subunit beta; transcription accessory protein, transcription; 3.00A {Escherichia coli}
Probab=99.39 E-value=4.3e-13 Score=127.00 Aligned_cols=94 Identities=26% Similarity=0.351 Sum_probs=75.6
Q ss_pred EEEEEEEeeecccCCCcceeee--cCCcccccCCchhhhhccCcCCCcccCcEEeCCCEEEEEeeecCCCCcccccc---
Q psy7583 122 VFFRSYKDAESKRIGDQEEQFE--KPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENEDELEGT--- 196 (451)
Q Consensus 122 ~~~k~~~~~~~~~~~~~~~~f~--~P~~~~~~~~~~~~~~~LD~dGi~~vG~~v~~gDiligK~~~~~~~~~~~~~~--- 196 (451)
+|+..|+++.+.++.|. |.++ +|+ .....|++||+|||+++|++|++|||||||++|..+.. +.++
T Consensus 2 iHIeeyei~~r~tk~G~-EeIT~dIPn------v~e~~l~~LDe~GIV~iGs~V~~GDILVGKvTPk~~~~--~tpEekL 72 (228)
T 3tbi_B 2 IHIQELACVSRDTKLGP-EEITADIPN------VGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQ--LTPEEKL 72 (228)
T ss_dssp CEEEEEEEEEEEETTEE-CEESSCCSS------CCHHHHHTBCTTSBBCTTCCCBTTCEEECEEEECCGGG--CCHHHHH
T ss_pred ccEEEEEEEEEEcCCCC-eEEecCCCC------ccHHHHhcCCCCCCeecCCEECCCCEEEeccCCCCCCC--CChHHHH
Confidence 58999999999888876 4454 454 34679999999999999999999999999999976321 1111
Q ss_pred ------ccccccceeeEEecCCcceEEEEEEEEe
Q psy7583 197 ------TKRFSKRDGSTFLRNSETGIVDQVMLTL 224 (451)
Q Consensus 197 ------~~~~~~~d~s~~~~~~e~g~Vd~V~i~~ 224 (451)
.+....+|+|+++++++.|+|+.|.+..
T Consensus 73 L~aIfg~k~~~vkDtSL~vp~G~~G~VidV~if~ 106 (228)
T 3tbi_B 73 LRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFT 106 (228)
T ss_dssp HHHHHCTTSSCEEECCEECCSSCBEEEEEEEEEE
T ss_pred HHHHhCCccccceeCcEecCCCCcEEEEEEEEEe
Confidence 1345679999999999999999998875
No 7
>3qqc_A DNA-directed RNA polymerase subunit B, DNA-direct polymerase subunit A', DNA-directed...; transcription, fusion protein, chimera protein, multiprotein; 3.30A {Pyrococcus furiosus}
Probab=99.37 E-value=3.9e-13 Score=140.05 Aligned_cols=61 Identities=38% Similarity=0.691 Sum_probs=56.7
Q ss_pred ceeeeeeccccceEEeecccceeEeccCCCCCccceecCchhHHHHHHHHHhCCcccEEEE
Q psy7583 390 PYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMV 450 (451)
Q Consensus 390 ~~~~~vC~~CG~~~~~~~~~~~~~C~~C~~~~~~~~v~iPy~~klL~~EL~sm~I~~r~~~ 450 (451)
+++++||..||++++.+.+...++|+.|+++.++..|.||||||||+|||+||||.+||.+
T Consensus 2 k~~~~VC~~CG~~~~~~~~~~~~~C~~C~~~~~i~~v~iPYa~KlL~qEL~smnI~~rl~~ 62 (436)
T 3qqc_A 2 KTEVWVCENCGHIALEDKRRRRVYCPVCGEEERISKVEMSYAFKLLLDELKAMVIRPKLNL 62 (436)
T ss_dssp CEEEEEETTTCCBCEEETTTTEEECTTTCCSSSEEEEEECHHHHHHHHHHHHTTBCCEEEE
T ss_pred ceEEEEeCCCCceeeeccccCccCCCCCCCCCeEEEEEcChHHHHHHHHHHhCCeeceeec
Confidence 4688999999999998877778899999999999999999999999999999999999976
No 8
>2a6h_C DNA-directed RNA polymerase beta chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.1 PDB: 1smy_C* 1zyr_C* 1iw7_C* 2a69_C* 2a6e_C 2a68_C* 2be5_C* 2cw0_C 2o5i_C 2o5j_C* 2ppb_C* 3aoh_C* 3aoi_C* 3dxj_C* 3eql_C* 1ynj_C* 1ynn_C* 2gho_C 1hqm_C 1l9u_C ...
Probab=98.18 E-value=4.3e-07 Score=103.75 Aligned_cols=49 Identities=29% Similarity=0.539 Sum_probs=44.1
Q ss_pred cccCCCCCCcceeeeeeeeecccCCCCcEEeccceeccceEeeeccccc
Q psy7583 34 YLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSMEYLRF 82 (451)
Q Consensus 34 ~~~~d~~p~G~NaiVAV~sytgynqed~~~~n~~~i~rG~~r~~~~~~~ 82 (451)
.+.++++|+|+||+||+|||+|||+||++++|+.++++|+|++.+.-.+
T Consensus 660 ~~~~gel~lG~N~lVA~m~~~GYN~EDAiiine~~v~rg~~tSihi~~~ 708 (1119)
T 2a6h_C 660 ASENGFLALGQNVLVAIMPFDGYNFEDAIVISEELLKRDFYTSIHIERY 708 (1119)
T ss_dssp TBSSSSBCCSEEEEEECSCCSSTTSSSEEEEETHHHHTTCSEEEEEEEE
T ss_pred ccCCCcccCceeEEEEEecccCCcchhhhhhhhhHHhcCCceEEEEEEE
Confidence 3578999999999999999999999999999999999999887775443
No 9
>3lu0_C DNA-directed RNA polymerase subunit beta; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_C*
Probab=97.81 E-value=6.8e-06 Score=94.12 Aligned_cols=60 Identities=28% Similarity=0.453 Sum_probs=52.7
Q ss_pred ccCCCccceecccc----ccc------cCCCCCCcceeeeeeeeecccCCCCcEEeccceeccceEeeec
Q psy7583 19 LYYPHKPLVTTRSM----EYL------RFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSME 78 (451)
Q Consensus 19 L~yPQ~Plv~T~~~----~~~------~~d~~p~G~NaiVAV~sytgynqed~~~~n~~~i~rG~~r~~~ 78 (451)
..|+|+|+|.+... +.+ ...+++.|+|++||.|++.|||.||+++++.-.++++.|.+.|
T Consensus 763 Tc~~QrPiV~~G~~V~~GdilADG~st~~GElaLG~N~lVAfMpW~GYNfEDAIlISErlV~eD~fTSIH 832 (1342)
T 3lu0_C 763 TCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIH 832 (1342)
T ss_dssp CBCCCCBCCCSSCCBCTTCBCBCCSSCSSSSCCCSEECCEECCCCSSTTSSSEEEECTHHHHTTTSCEEE
T ss_pred ccccccceeecCCEEecCcEecccccccCCeeecccccEEEEecccCcccccchhhhhhhhhcCCceeEE
Confidence 57999999999743 655 7899999999999999999999999999999999988766443
No 10
>3h0g_B DNA-directed RNA polymerase II subunit RPB2; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=88.97 E-value=0.08 Score=61.30 Aligned_cols=37 Identities=46% Similarity=0.880 Sum_probs=31.8
Q ss_pred cceeeeeeeeecccCCCCcEEeccceeccceEeeeccccc
Q psy7583 43 GINSIVAILCYTGYNQEDSVILNASAVERGYFRSMEYLRF 82 (451)
Q Consensus 43 G~NaiVAV~sytgynqed~~~~n~~~i~rG~~r~~~~~~~ 82 (451)
-+-|+.+- +||||||++++|+.+++||++++.++..+
T Consensus 812 aiVAvmsy---~GYn~EDAiIink~sv~rg~~~s~~~~~y 848 (1210)
T 3h0g_B 812 AIVAILCY---SGYNQEDSIIMNQASIDRGLFRSIFYRTY 848 (1210)
T ss_dssp ECBEECCC---SSSSCSSCEEEEHHHHTTTTTCEEEEEEE
T ss_pred eEEEEecc---CCCChhhheeeehhheecCceEEEEEEEE
Confidence 44566666 99999999999999999999998887665
No 11
>1twf_B DNA-directed RNA polymerase II 140 kDa polypeptid; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.1 PDB: 1i3q_B 1i6h_B 1k83_B* 1nik_B 1nt9_B 1pqv_B 1r5u_B 1r9s_B* 1r9t_B* 1sfo_B* 1twa_B* 1twc_B* 1i50_B* 1twg_B* 1twh_B* 1wcm_B 1y1v_B 1y1w_B 1y1y_B 1y77_B* ...
Probab=86.79 E-value=0.12 Score=60.14 Aligned_cols=37 Identities=46% Similarity=0.839 Sum_probs=31.7
Q ss_pred cceeeeeeeeecccCCCCcEEeccceeccceEeeeccccc
Q psy7583 43 GINSIVAILCYTGYNQEDSVILNASAVERGYFRSMEYLRF 82 (451)
Q Consensus 43 G~NaiVAV~sytgynqed~~~~n~~~i~rG~~r~~~~~~~ 82 (451)
-+-|+.+- +||||||++++|+.+++||++++.++..+
T Consensus 823 ~iVAvm~y---~GYN~EDAiIin~~sv~rg~~~s~~~~~y 859 (1224)
T 1twf_B 823 AIVAIACY---SGYNQEDSMIMNQSSIDRGLFRSLFFRSY 859 (1224)
T ss_dssp EEEEECBS---SSTTTTTEEEEEHHHHHTTTTCEEEEEEE
T ss_pred EEEEEecc---cCcccchhhhhhhhHHhcCCeeEEEEEEE
Confidence 34566666 99999999999999999999998887665
No 12
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=85.29 E-value=0.51 Score=36.83 Aligned_cols=33 Identities=24% Similarity=0.596 Sum_probs=25.6
Q ss_pred eeeeeeccccceEEeecccceeEeccCCCCCccce
Q psy7583 391 YRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQ 425 (451)
Q Consensus 391 ~~~~vC~~CG~~~~~~~~~~~~~C~~C~~~~~~~~ 425 (451)
|.+..|+ ||.+.+.....++..|+ |+..-++.+
T Consensus 2 Y~vv~C~-C~~~~~~~~~~kT~~C~-CG~~~~~~k 34 (71)
T 1gh9_A 2 YIIFRCD-CGRALYSREGAKTRKCV-CGRTVNVKD 34 (71)
T ss_dssp EEEEEET-TSCCEEEETTCSEEEET-TTEEEECCS
T ss_pred eEEEECC-CCCEEEEcCCCcEEECC-CCCeeeece
Confidence 5678999 99998887777788999 986444433
No 13
>4ayb_B DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_B 2y0s_B 2waq_B 4b1o_B 4b1p_R 2pmz_B 3hkz_B
Probab=78.79 E-value=0.42 Score=55.29 Aligned_cols=36 Identities=47% Similarity=0.818 Sum_probs=29.8
Q ss_pred ceeeeeeeeecccCCCCcEEeccceeccceEeeeccccc
Q psy7583 44 INSIVAILCYTGYNQEDSVILNASAVERGYFRSMEYLRF 82 (451)
Q Consensus 44 ~NaiVAV~sytgynqed~~~~n~~~i~rG~~r~~~~~~~ 82 (451)
.-|+.+- +|||+||++++|+.++++|+|++.++-.+
T Consensus 726 lVA~m~w---~GYN~EDAIIine~~v~rg~ftSihi~~y 761 (1131)
T 4ayb_B 726 ILAVISF---TGYNMEDSIIMNRSSVERGMYRSTFFRLY 761 (1131)
T ss_dssp EEEECCC---SSCCCTTCEEEEHHHHTTTTTCEEEEEEE
T ss_pred EEEEEcc---CCccHHHhhhhhcchhhcccceeeEEEEE
Confidence 4455566 89999999999999999999888776544
No 14
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=75.00 E-value=1.4 Score=40.77 Aligned_cols=29 Identities=28% Similarity=0.650 Sum_probs=22.3
Q ss_pred CceeeeeeccccceEEeecccceeEeccCCCC
Q psy7583 389 DPYRIHVCNFCGLIAIANMRNNTFECKGCKNK 420 (451)
Q Consensus 389 D~~~~~vC~~CG~~~~~~~~~~~~~C~~C~~~ 420 (451)
|....|+|..||.+... ...+.|+.|+..
T Consensus 167 ~~~~~~~C~~CG~i~~g---~~p~~CP~C~~~ 195 (202)
T 1yuz_A 167 DDDKFHLCPICGYIHKG---EDFEKCPICFRP 195 (202)
T ss_dssp CSCCEEECSSSCCEEES---SCCSBCTTTCCB
T ss_pred CCCcEEEECCCCCEEcC---cCCCCCCCCCCC
Confidence 66678999999988542 345789999864
No 15
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=71.35 E-value=2.6 Score=33.69 Aligned_cols=28 Identities=21% Similarity=0.548 Sum_probs=23.6
Q ss_pred eeeeeccccceEEeecccceeEeccCCC
Q psy7583 392 RIHVCNFCGLIAIANMRNNTFECKGCKN 419 (451)
Q Consensus 392 ~~~vC~~CG~~~~~~~~~~~~~C~~C~~ 419 (451)
.-+.|+.||.........+.|.|..|+.
T Consensus 26 ~~y~Cp~CG~~~v~r~atGiW~C~~Cg~ 53 (83)
T 1vq8_Z 26 EDHACPNCGEDRVDRQGTGIWQCSYCDY 53 (83)
T ss_dssp SCEECSSSCCEEEEEEETTEEEETTTCC
T ss_pred ccCcCCCCCCcceeccCCCeEECCCCCC
Confidence 3578999999887777788999999985
No 16
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=59.40 E-value=5.5 Score=28.19 Aligned_cols=27 Identities=22% Similarity=0.443 Sum_probs=21.8
Q ss_pred eeeeccccc-eEEeecccceeEeccCCC
Q psy7583 393 IHVCNFCGL-IAIANMRNNTFECKGCKN 419 (451)
Q Consensus 393 ~~vC~~CG~-~~~~~~~~~~~~C~~C~~ 419 (451)
..+|+.||. -+.++...+..+|..|+.
T Consensus 5 ~~~CP~C~~~~l~~d~~~gelvC~~CG~ 32 (50)
T 1pft_A 5 QKVCPACESAELIYDPERGEIVCAKCGY 32 (50)
T ss_dssp CCSCTTTSCCCEEEETTTTEEEESSSCC
T ss_pred cEeCcCCCCcceEEcCCCCeEECcccCC
Confidence 457999998 667777777889999974
No 17
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=58.92 E-value=4.9 Score=36.70 Aligned_cols=30 Identities=17% Similarity=0.437 Sum_probs=20.6
Q ss_pred CceeeeeeccccceEEeecccceeEeccCCCC
Q psy7583 389 DPYRIHVCNFCGLIAIANMRNNTFECKGCKNK 420 (451)
Q Consensus 389 D~~~~~vC~~CG~~~~~~~~~~~~~C~~C~~~ 420 (451)
|....|+|..||.+.... .-+-.|+.|+..
T Consensus 151 ~~~~~~~C~~CG~~~~g~--~~p~~CP~C~~~ 180 (191)
T 1lko_A 151 EQATKWRCRNCGYVHEGT--GAPELCPACAHP 180 (191)
T ss_dssp EEEEEEEETTTCCEEEEE--ECCSBCTTTCCB
T ss_pred CCCceEEECCCCCEeeCC--CCCCCCCCCcCC
Confidence 445589999999885431 112279999864
No 18
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=56.40 E-value=6.8 Score=35.24 Aligned_cols=26 Identities=23% Similarity=0.669 Sum_probs=19.1
Q ss_pred eeeeeccccceEEeecccceeEeccCCCC
Q psy7583 392 RIHVCNFCGLIAIANMRNNTFECKGCKNK 420 (451)
Q Consensus 392 ~~~vC~~CG~~~~~~~~~~~~~C~~C~~~ 420 (451)
..|+|..||-+.... -+-.|+.|+.+
T Consensus 137 ~~~~C~~CG~i~~~~---~p~~CP~Cg~~ 162 (170)
T 3pwf_A 137 KVYICPICGYTAVDE---APEYCPVCGAP 162 (170)
T ss_dssp CEEECTTTCCEEESC---CCSBCTTTCCB
T ss_pred CeeEeCCCCCeeCCC---CCCCCCCCCCC
Confidence 579999999986532 22379999853
No 19
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=54.32 E-value=6.4 Score=29.11 Aligned_cols=32 Identities=19% Similarity=0.296 Sum_probs=23.7
Q ss_pred cCCceeeeeeccccc-eEEeecccceeEeccCC
Q psy7583 387 VSDPYRIHVCNFCGL-IAIANMRNNTFECKGCK 418 (451)
Q Consensus 387 ~SD~~~~~vC~~CG~-~~~~~~~~~~~~C~~C~ 418 (451)
.|+...+..|+.||. -+..+...+..+|..|+
T Consensus 5 ~~~ll~~~~Cp~C~~~~lv~D~~~ge~vC~~CG 37 (58)
T 1dl6_A 5 RLDALPRVTCPNHPDAILVEDYRAGDMICPECG 37 (58)
T ss_dssp SCCCCSCCSBTTBSSSCCEECSSSCCEECTTTC
T ss_pred hhhccccccCcCCCCCceeEeCCCCeEEeCCCC
Confidence 455566778999987 45556666778999997
No 20
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=52.26 E-value=8.6 Score=32.61 Aligned_cols=29 Identities=21% Similarity=0.513 Sum_probs=22.2
Q ss_pred eeeeeeccccceEEeecccceeEeccCCC
Q psy7583 391 YRIHVCNFCGLIAIANMRNNTFECKGCKN 419 (451)
Q Consensus 391 ~~~~vC~~CG~~~~~~~~~~~~~C~~C~~ 419 (451)
+.-+.|+.||.....-...+.|.|..|+.
T Consensus 58 ~akytCPfCGk~~vKR~avGIW~C~~Cgk 86 (116)
T 3cc2_Z 58 NEDHACPNCGEDRVDRQGTGIWQCSYCDY 86 (116)
T ss_dssp HSCEECSSSCCEEEEEEETTEEEETTTCC
T ss_pred ccCCcCCCCCCceeEecCceeEECCCCCC
Confidence 45688999998765444467899999984
No 21
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=51.95 E-value=8.8 Score=31.87 Aligned_cols=29 Identities=31% Similarity=0.706 Sum_probs=22.6
Q ss_pred eeeeeeccccceEEeecccceeEeccCCC
Q psy7583 391 YRIHVCNFCGLIAIANMRNNTFECKGCKN 419 (451)
Q Consensus 391 ~~~~vC~~CG~~~~~~~~~~~~~C~~C~~ 419 (451)
+.-+.|+.||.....-...+.|.|..|+.
T Consensus 34 ~aky~CpfCgk~~vKR~a~GIW~C~kCg~ 62 (103)
T 4a17_Y 34 HAKYGCPFCGKVAVKRAAVGIWKCKPCKK 62 (103)
T ss_dssp HSCEECTTTCCEEEEEEETTEEEETTTTE
T ss_pred hcCCCCCCCCCceeeecCcceEEcCCCCC
Confidence 34578999999876544567899999973
No 22
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=49.78 E-value=7.7 Score=31.02 Aligned_cols=28 Identities=25% Similarity=0.776 Sum_probs=21.9
Q ss_pred eeeeeccccceEEeecccceeEeccCCC
Q psy7583 392 RIHVCNFCGLIAIANMRNNTFECKGCKN 419 (451)
Q Consensus 392 ~~~vC~~CG~~~~~~~~~~~~~C~~C~~ 419 (451)
.-+.|+.||.....-...+.|.|..|+.
T Consensus 34 ~ky~CpfCGk~~vkR~a~GIW~C~kCg~ 61 (83)
T 3j21_i 34 QKHTCPVCGRKAVKRISTGIWQCQKCGA 61 (83)
T ss_dssp SCBCCSSSCSSCEEEEETTEEEETTTCC
T ss_pred cccCCCCCCCceeEecCcCeEEcCCCCC
Confidence 4578999999866544567899999974
No 23
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=44.13 E-value=8.1 Score=31.46 Aligned_cols=29 Identities=28% Similarity=0.685 Sum_probs=21.9
Q ss_pred eeeeeeccccceEEeecccceeEeccCCC
Q psy7583 391 YRIHVCNFCGLIAIANMRNNTFECKGCKN 419 (451)
Q Consensus 391 ~~~~vC~~CG~~~~~~~~~~~~~C~~C~~ 419 (451)
+.-+.|+.||.....-...+.|.|..|+.
T Consensus 34 ~~ky~CpfCgk~~vkR~a~GIW~C~~Cg~ 62 (92)
T 3iz5_m 34 HSKYFCEFCGKFAVKRKAVGIWGCKDCGK 62 (92)
T ss_dssp HSCBCCTTTCSSCBEEEETTEEECSSSCC
T ss_pred hccccCcccCCCeeEecCcceEEcCCCCC
Confidence 34568999998865444467899999974
No 24
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=43.27 E-value=7.7 Score=30.21 Aligned_cols=28 Identities=25% Similarity=0.629 Sum_probs=21.3
Q ss_pred eeeeeccccceEEeecccceeEeccCCC
Q psy7583 392 RIHVCNFCGLIAIANMRNNTFECKGCKN 419 (451)
Q Consensus 392 ~~~vC~~CG~~~~~~~~~~~~~C~~C~~ 419 (451)
.-+.|+.||.....-...+.|.|..|+.
T Consensus 25 ~ky~C~fCgk~~vkR~a~GIW~C~~C~~ 52 (72)
T 3jyw_9 25 ARYDCSFCGKKTVKRGAAGIWTCSCCKK 52 (72)
T ss_dssp SCBCCSSCCSSCBSBCSSSCBCCSSSCC
T ss_pred cCccCCCCCCceeEecCCCeEECCCCCC
Confidence 4578999998865444467899999974
No 25
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=42.76 E-value=9.6 Score=29.72 Aligned_cols=30 Identities=17% Similarity=0.485 Sum_probs=22.1
Q ss_pred ceeeeeeccccceEEeecccceeEeccCCC
Q psy7583 390 PYRIHVCNFCGLIAIANMRNNTFECKGCKN 419 (451)
Q Consensus 390 ~~~~~vC~~CG~~~~~~~~~~~~~C~~C~~ 419 (451)
.+.-+.|+.||.....-...+.|.|..|..
T Consensus 24 q~~ky~C~fCgk~~vkR~a~GIW~C~~C~~ 53 (73)
T 1ffk_W 24 HKKKYKCPVCGFPKLKRASTSIWVCGHCGY 53 (73)
T ss_pred cccCccCCCCCCceeEEEEeEEEECCCCCc
Confidence 345678999998765433457899999974
No 26
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=41.48 E-value=8.7 Score=28.19 Aligned_cols=27 Identities=19% Similarity=0.505 Sum_probs=18.8
Q ss_pred eeeeccccceEEeecccceeEeccCCC
Q psy7583 393 IHVCNFCGLIAIANMRNNTFECKGCKN 419 (451)
Q Consensus 393 ~~vC~~CG~~~~~~~~~~~~~C~~C~~ 419 (451)
...|++||.........+.+.|..|+-
T Consensus 18 ~~fCPkCG~~~~ma~~~dr~~C~kCgy 44 (55)
T 2k4x_A 18 HRFCPRCGPGVFLAEHADRYSCGRCGY 44 (55)
T ss_dssp SCCCTTTTTTCCCEECSSEEECTTTCC
T ss_pred cccCcCCCCceeEeccCCEEECCCCCC
Confidence 468999998544323346788999974
No 27
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=40.63 E-value=9.9 Score=30.97 Aligned_cols=29 Identities=24% Similarity=0.582 Sum_probs=21.7
Q ss_pred eeeeeeccccceEEeecccceeEeccCCC
Q psy7583 391 YRIHVCNFCGLIAIANMRNNTFECKGCKN 419 (451)
Q Consensus 391 ~~~~vC~~CG~~~~~~~~~~~~~C~~C~~ 419 (451)
+.-+.|+.||.....-...+.|.|..|+.
T Consensus 34 ~~ky~CpfCgk~~vkR~a~GIW~C~~C~~ 62 (92)
T 3izc_m 34 HARYDCSFCGKKTVKRGAAGIWTCSCCKK 62 (92)
T ss_dssp HSCCCCSSSCSSCCEEEETTEEECTTTCC
T ss_pred hcCCcCCCCCCceeeecccceEEcCCCCC
Confidence 34578999998865444467899999974
No 28
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=37.17 E-value=21 Score=25.61 Aligned_cols=26 Identities=19% Similarity=0.514 Sum_probs=17.2
Q ss_pred eeeeccccceEEeecccceeEeccCC
Q psy7583 393 IHVCNFCGLIAIANMRNNTFECKGCK 418 (451)
Q Consensus 393 ~~vC~~CG~~~~~~~~~~~~~C~~C~ 418 (451)
...|++||.-.........+.|..|+
T Consensus 19 ~k~CP~CG~~~fm~~~~~R~~C~kCG 44 (50)
T 3j20_Y 19 NKFCPRCGPGVFMADHGDRWACGKCG 44 (50)
T ss_dssp SEECSSSCSSCEEEECSSEEECSSSC
T ss_pred cccCCCCCCceEEecCCCeEECCCCC
Confidence 46799999832222224678899997
No 29
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=36.70 E-value=18 Score=28.67 Aligned_cols=30 Identities=20% Similarity=0.607 Sum_probs=19.6
Q ss_pred eeeeeeccccceEEeec---------------ccceeEeccCCCC
Q psy7583 391 YRIHVCNFCGLIAIANM---------------RNNTFECKGCKNK 420 (451)
Q Consensus 391 ~~~~vC~~CG~~~~~~~---------------~~~~~~C~~C~~~ 420 (451)
...|+|..||-+--... --..|.|+.|+..
T Consensus 25 m~~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga~ 69 (81)
T 2kn9_A 25 YKLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAA 69 (81)
T ss_dssp CCEEEETTTCCEEETTTCBTTTTBCTTCCTTTSCTTCCCTTTCCC
T ss_pred cceEEeCCCCEEEcCCcCCcccCcCCCCChhHCCCCCcCCCCCCC
Confidence 35699999998743210 0135789999864
No 30
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=36.63 E-value=14 Score=31.27 Aligned_cols=27 Identities=22% Similarity=0.582 Sum_probs=20.3
Q ss_pred eeeeccccceEEee----cccceeEeccCCC
Q psy7583 393 IHVCNFCGLIAIAN----MRNNTFECKGCKN 419 (451)
Q Consensus 393 ~~vC~~CG~~~~~~----~~~~~~~C~~C~~ 419 (451)
...|+.||.++... .....+.|+.|+-
T Consensus 4 ~~FCp~CgnlL~~~~~~~~~~~~~~C~~C~y 34 (122)
T 1twf_I 4 FRFCRDCNNMLYPREDKENNRLLFECRTCSY 34 (122)
T ss_dssp CCBCSSSCCBCEEEEETTTTEEEEECSSSSC
T ss_pred CCcccccCccCcccccCcCCCCEEECCcCCC
Confidence 45799999998754 2345789999974
No 31
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=35.35 E-value=18 Score=26.50 Aligned_cols=29 Identities=24% Similarity=0.535 Sum_probs=19.0
Q ss_pred eeeeeccccceEEeec---------------ccceeEeccCCCC
Q psy7583 392 RIHVCNFCGLIAIANM---------------RNNTFECKGCKNK 420 (451)
Q Consensus 392 ~~~vC~~CG~~~~~~~---------------~~~~~~C~~C~~~ 420 (451)
..|+|..||-+--... --..|.|+.|+..
T Consensus 2 ~~y~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cga~ 45 (55)
T 2v3b_B 2 RKWQCVVCGFIYDEALGLPEEGIPAGTRWEDIPADWVCPDCGVG 45 (55)
T ss_dssp CEEEETTTCCEEETTTCBTTTTBCTTCCGGGSCTTCCCTTTCCC
T ss_pred CcEEeCCCCeEECCCcCCcccCcCCCCChhHCCCCCcCCCCCCC
Confidence 3589999998743210 0135789999864
No 32
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=32.65 E-value=16 Score=26.44 Aligned_cols=25 Identities=28% Similarity=0.571 Sum_probs=19.1
Q ss_pred eeeeeccccceEEeecccceeEeccCCCC
Q psy7583 392 RIHVCNFCGLIAIANMRNNTFECKGCKNK 420 (451)
Q Consensus 392 ~~~vC~~CG~~~~~~~~~~~~~C~~C~~~ 420 (451)
..++|..||... ..+.|.|+.|+..
T Consensus 13 ~k~iCpkC~a~~----~~gaw~CrKCG~~ 37 (51)
T 3j21_g 13 KKYVCLRCGATN----PWGAKKCRKCGYK 37 (51)
T ss_dssp SEEECTTTCCEE----CTTCSSCSSSSSC
T ss_pred CCccCCCCCCcC----CCCceecCCCCCc
Confidence 468999999872 2467889999854
No 33
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=30.62 E-value=21 Score=29.80 Aligned_cols=27 Identities=15% Similarity=0.439 Sum_probs=19.8
Q ss_pred eeeeccccceEEeecc----cceeEeccCCC
Q psy7583 393 IHVCNFCGLIAIANMR----NNTFECKGCKN 419 (451)
Q Consensus 393 ~~vC~~CG~~~~~~~~----~~~~~C~~C~~ 419 (451)
+..|+.||.++..... ...+.|+.|.-
T Consensus 4 m~FCp~Cgn~L~~~~~~~~~~~~~~C~~C~y 34 (113)
T 3h0g_I 4 FQYCIECNNMLYPREDKVDRVLRLACRNCDY 34 (113)
T ss_dssp CCCCSSSCCCCEECCCTTTCCCCEECSSSCC
T ss_pred ceeCcCCCCEeeEcccCCCCeeEEECCCCCC
Confidence 4579999999876432 23689999974
No 34
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=29.80 E-value=33 Score=26.14 Aligned_cols=29 Identities=24% Similarity=0.485 Sum_probs=22.8
Q ss_pred eeeeeeccccceEEeecccceeEeccCCC
Q psy7583 391 YRIHVCNFCGLIAIANMRNNTFECKGCKN 419 (451)
Q Consensus 391 ~~~~vC~~CG~~~~~~~~~~~~~C~~C~~ 419 (451)
..+.+|..|+..+..+...+.-+|..|+.
T Consensus 6 L~iL~CP~ck~~L~~~~~~~~LiC~~cg~ 34 (68)
T 2hf1_A 6 LEILVCPLCKGPLVFDKSKDELICKGDRL 34 (68)
T ss_dssp EEECBCTTTCCBCEEETTTTEEEETTTTE
T ss_pred hhheECCCCCCcCeEeCCCCEEEcCCCCc
Confidence 35779999998877766567778999973
No 35
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=29.48 E-value=19 Score=27.74 Aligned_cols=30 Identities=23% Similarity=0.562 Sum_probs=19.4
Q ss_pred eeeeeeccccceEEee---c------------ccceeEeccCCCC
Q psy7583 391 YRIHVCNFCGLIAIAN---M------------RNNTFECKGCKNK 420 (451)
Q Consensus 391 ~~~~vC~~CG~~~~~~---~------------~~~~~~C~~C~~~ 420 (451)
...|+|..||-+--.. . --..|.|+.|+..
T Consensus 5 m~~y~C~vCGyiYd~~~Gdp~~gi~pGT~f~~lPddw~CP~Cga~ 49 (70)
T 1dx8_A 5 EGKYECEACGYIYEPEKGDKFAGIPPGTPFVDLSDSFMCPACRSP 49 (70)
T ss_dssp SSCEEETTTCCEECTTTCCTTTTCCSSCCGGGSCTTCBCTTTCCB
T ss_pred CceEEeCCCCEEEcCCCCCcccCcCCCCchhhCCCCCcCCCCCCC
Confidence 3468999999773211 0 0135789999853
No 36
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=29.36 E-value=33 Score=26.33 Aligned_cols=28 Identities=18% Similarity=0.256 Sum_probs=22.5
Q ss_pred eeeeeccccceEEeecccceeEeccCCC
Q psy7583 392 RIHVCNFCGLIAIANMRNNTFECKGCKN 419 (451)
Q Consensus 392 ~~~vC~~CG~~~~~~~~~~~~~C~~C~~ 419 (451)
.+.+|..|+..+..+...+.-+|..|+.
T Consensus 7 ~iL~CP~ck~~L~~~~~~~~LiC~~cg~ 34 (70)
T 2js4_A 7 DILVCPVCKGRLEFQRAQAELVCNADRL 34 (70)
T ss_dssp CCCBCTTTCCBEEEETTTTEEEETTTTE
T ss_pred hheECCCCCCcCEEeCCCCEEEcCCCCc
Confidence 5678999999888776666778999973
No 37
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=29.27 E-value=15 Score=31.76 Aligned_cols=33 Identities=21% Similarity=0.426 Sum_probs=21.9
Q ss_pred cCCceeeeeeccccceEEeec----ccceeEeccCCC
Q psy7583 387 VSDPYRIHVCNFCGLIAIANM----RNNTFECKGCKN 419 (451)
Q Consensus 387 ~SD~~~~~vC~~CG~~~~~~~----~~~~~~C~~C~~ 419 (451)
.++-..+..|++||.++.... ....|.|+.|.-
T Consensus 18 ~~~~~~~~FCPeCgNmL~pked~~~~~l~~~CrtCgY 54 (133)
T 3qt1_I 18 GSHMTTFRFCRDCNNMLYPREDKENNRLLFECRTCSY 54 (133)
T ss_dssp ----CCCCBCTTTCCBCBCCBCTTTCCBCCBCSSSCC
T ss_pred CccccCCeeCCCCCCEeeECccCCCceeEEECCCCCC
Confidence 345556788999999987542 123689999974
No 38
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=28.21 E-value=26 Score=25.27 Aligned_cols=28 Identities=21% Similarity=0.489 Sum_probs=18.3
Q ss_pred eeeeccccceEEee---c------------ccceeEeccCCCC
Q psy7583 393 IHVCNFCGLIAIAN---M------------RNNTFECKGCKNK 420 (451)
Q Consensus 393 ~~vC~~CG~~~~~~---~------------~~~~~~C~~C~~~ 420 (451)
.|+|..||-+--.. . --..|.|+.|+..
T Consensus 2 ~~~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cg~~ 44 (52)
T 1yk4_A 2 KLSCKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAP 44 (52)
T ss_dssp EEEESSSSCEEETTTCBGGGTBCTTCCGGGSCTTCBCTTTCCB
T ss_pred cEEeCCCCeEECCCcCCcccCcCCCCCHhHCCCCCcCCCCCCC
Confidence 58999999874321 0 0135789999853
No 39
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=27.41 E-value=16 Score=31.52 Aligned_cols=29 Identities=28% Similarity=0.620 Sum_probs=20.1
Q ss_pred eeeeeccccceEEeecccceeEeccCCCC
Q psy7583 392 RIHVCNFCGLIAIANMRNNTFECKGCKNK 420 (451)
Q Consensus 392 ~~~vC~~CG~~~~~~~~~~~~~C~~C~~~ 420 (451)
...||..||.......+...|.|..|...
T Consensus 79 ~~~VC~~C~~~~~~~~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 79 KKNVCTKCGVETSNNRPHPVWLCKICLEQ 107 (134)
T ss_dssp CCEEETTSEEECCCSSSSCCEEEHHHHHH
T ss_pred CcccccccCCccCCCCCccceechhhHHH
Confidence 45788888877543344567899999743
No 40
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=27.33 E-value=24 Score=30.54 Aligned_cols=45 Identities=13% Similarity=0.222 Sum_probs=23.2
Q ss_pred cccchhhHHHHH--hcchhHHHHHhhcccC-----CceeeeeeccccceEEe
Q psy7583 361 LRFGEMERDCQI--SHGAAQFLRERLFEVS-----DPYRIHVCNFCGLIAIA 405 (451)
Q Consensus 361 ~r~GEME~~~l~--~~g~~~~l~e~l~~~S-----D~~~~~vC~~CG~~~~~ 405 (451)
+++|+++.-.-. ..-+..+-++.++..+ +.-..+.|.+||.....
T Consensus 31 l~IG~ls~v~~e~l~faf~~~~~gt~~e~A~L~i~~~p~~~~C~~CG~~~~~ 82 (139)
T 3a43_A 31 VVLGELQDVAEDIVKFAMEQLFAGTIAEGAEIEFVEEEAVFKCRNCNYEWKL 82 (139)
T ss_dssp EEEETTCCCCHHHHHHHHHHHHTTSTTTTCEEEEEEECCEEEETTTCCEEEG
T ss_pred hhHHHHhhhhHHHHHHHHHHHHcCCcccCCEEEEEecCCcEECCCCCCEEec
Confidence 567777654222 2222223333333332 22346889999987553
No 41
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=27.27 E-value=19 Score=29.91 Aligned_cols=27 Identities=26% Similarity=0.552 Sum_probs=18.1
Q ss_pred eeeeccccceEEeecccceeEeccCCCC
Q psy7583 393 IHVCNFCGLIAIANMRNNTFECKGCKNK 420 (451)
Q Consensus 393 ~~vC~~CG~~~~~~~~~~~~~C~~C~~~ 420 (451)
-+.|.+||.-. .......-.|+.|++.
T Consensus 67 p~~C~~CG~~F-~~~~~kPsrCP~CkSe 93 (105)
T 2gmg_A 67 PAQCRKCGFVF-KAEINIPSRCPKCKSE 93 (105)
T ss_dssp CCBBTTTCCBC-CCCSSCCSSCSSSCCC
T ss_pred CcChhhCcCee-cccCCCCCCCcCCCCC
Confidence 36899999874 2222344579999864
No 42
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=27.07 E-value=34 Score=26.10 Aligned_cols=28 Identities=14% Similarity=0.037 Sum_probs=22.1
Q ss_pred eeeeeccccceEEeecccceeEeccCCC
Q psy7583 392 RIHVCNFCGLIAIANMRNNTFECKGCKN 419 (451)
Q Consensus 392 ~~~vC~~CG~~~~~~~~~~~~~C~~C~~ 419 (451)
.+.+|..|+..+..+...+.-+|..|+.
T Consensus 7 ~iL~CP~ck~~L~~~~~~~~LiC~~cg~ 34 (68)
T 2jr6_A 7 DILVCPVTKGRLEYHQDKQELWSRQAKL 34 (68)
T ss_dssp CCCBCSSSCCBCEEETTTTEEEETTTTE
T ss_pred hheECCCCCCcCeEeCCCCEEEcCCCCc
Confidence 4678999998877766567778999973
No 43
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=26.09 E-value=33 Score=26.09 Aligned_cols=28 Identities=4% Similarity=-0.213 Sum_probs=22.3
Q ss_pred eeeeeccccceEEeecccceeEeccCCC
Q psy7583 392 RIHVCNFCGLIAIANMRNNTFECKGCKN 419 (451)
Q Consensus 392 ~~~vC~~CG~~~~~~~~~~~~~C~~C~~ 419 (451)
++.+|..|+..+..+...+.-+|..|+.
T Consensus 9 eiL~CP~ck~~L~~~~~~g~LvC~~c~~ 36 (67)
T 2jny_A 9 EVLACPKDKGPLRYLESEQLLVNERLNL 36 (67)
T ss_dssp CCCBCTTTCCBCEEETTTTEEEETTTTE
T ss_pred HHhCCCCCCCcCeEeCCCCEEEcCCCCc
Confidence 5679999998887776666778999973
No 44
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=25.60 E-value=31 Score=27.73 Aligned_cols=30 Identities=23% Similarity=0.520 Sum_probs=19.5
Q ss_pred eeeeeeccccceEEee---cc------------cceeEeccCCCC
Q psy7583 391 YRIHVCNFCGLIAIAN---MR------------NNTFECKGCKNK 420 (451)
Q Consensus 391 ~~~~vC~~CG~~~~~~---~~------------~~~~~C~~C~~~ 420 (451)
...|+|..||-+--.. .. -..|.|+.|+..
T Consensus 33 m~~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga~ 77 (87)
T 1s24_A 33 YLKWICITCGHIYDEALGDEAEGFTPGTRFEDIPDDWCCPDCGAT 77 (87)
T ss_dssp CCEEEETTTTEEEETTSCCTTTTCCSCCCGGGCCTTCCCSSSCCC
T ss_pred CceEECCCCCeEecCCcCCcccCcCCCCChhHCCCCCCCCCCCCC
Confidence 3579999999773321 00 125789999864
No 45
>1x3z_A Peptide: N-glycanase; hydrolase-hydrolase inhibitor complex; HET: SUC; 2.80A {Saccharomyces cerevisiae} SCOP: d.3.1.4 PDB: 1x3w_A* 3esw_A*
Probab=25.50 E-value=1e+02 Score=30.68 Aligned_cols=41 Identities=22% Similarity=0.412 Sum_probs=30.0
Q ss_pred ceeEeccCCCCCccceecCchh------------HHHHHHHHHhCCcccEEEE
Q psy7583 410 NTFECKGCKNKTQISQVRLPYA------------AKLLFQELMSMNIAPRLMV 450 (451)
Q Consensus 410 ~~~~C~~C~~~~~~~~v~iPy~------------~klL~~EL~sm~I~~r~~~ 450 (451)
..|.|..|+..+.+..+.=|.. .-+++.=|.|+||..|+..
T Consensus 154 E~y~C~~C~~~~rFPRYn~~~~ll~tr~G~C~e~A~lF~~llRalGi~aR~V~ 206 (335)
T 1x3z_A 154 EIYKCNRCGNITRFPRYNDPIKLLETRKGRCGEWCNLFTLILKSFGLDVRYVW 206 (335)
T ss_dssp EEEEETTTCCEEEEEEECCHHHHHHHCEECHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEeecCCCCcccccCCcCCHHHHHHhCCcChHHHHHHHHHHHHHCCCCeEEEe
Confidence 3678999997766655555432 3477788999999999863
No 46
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=25.43 E-value=24 Score=24.90 Aligned_cols=29 Identities=24% Similarity=0.457 Sum_probs=18.7
Q ss_pred eeeeeccccceEEee-c-------ccceeEeccCCCC
Q psy7583 392 RIHVCNFCGLIAIAN-M-------RNNTFECKGCKNK 420 (451)
Q Consensus 392 ~~~vC~~CG~~~~~~-~-------~~~~~~C~~C~~~ 420 (451)
..++|..||-+-... . --..|.|+.|+..
T Consensus 3 ~~y~C~vCGyvyd~~~Gd~t~f~~lP~dw~CP~Cg~~ 39 (46)
T 6rxn_A 3 QKYVCNVCGYEYDPAEHDNVPFDQLPDDWCCPVCGVS 39 (46)
T ss_dssp CCEEETTTCCEECGGGGTTCCGGGSCTTCBCTTTCCB
T ss_pred CEEECCCCCeEEeCCcCCCcchhhCCCCCcCcCCCCc
Confidence 468999999764311 0 0124789999854
No 47
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=24.70 E-value=28 Score=26.02 Aligned_cols=24 Identities=38% Similarity=0.812 Sum_probs=17.2
Q ss_pred eeeeeccccceEEeecccceeEeccCCCCC
Q psy7583 392 RIHVCNFCGLIAIANMRNNTFECKGCKNKT 421 (451)
Q Consensus 392 ~~~vC~~CG~~~~~~~~~~~~~C~~C~~~~ 421 (451)
.+.+|..||.... ...|+.|+..+
T Consensus 5 ~mr~C~~CgvYTL------k~~CP~CG~~T 28 (60)
T 2apo_B 5 RMKKCPKCGLYTL------KEICPKCGEKT 28 (60)
T ss_dssp CCEECTTTCCEES------SSBCSSSCSBC
T ss_pred hceeCCCCCCEec------cccCcCCCCcC
Confidence 4678999997644 23599998643
No 48
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=23.23 E-value=34 Score=32.77 Aligned_cols=25 Identities=24% Similarity=0.462 Sum_probs=17.9
Q ss_pred eeccccceEEee--cccceeEeccCCC
Q psy7583 395 VCNFCGLIAIAN--MRNNTFECKGCKN 419 (451)
Q Consensus 395 vC~~CG~~~~~~--~~~~~~~C~~C~~ 419 (451)
-|..||...... ....+|+|+.|..
T Consensus 244 pC~~CG~~I~~~~~~gR~t~~CP~CQ~ 270 (271)
T 2xzf_A 244 KCSRCGAEIQKIKVAGRGTHFCPVCQQ 270 (271)
T ss_dssp BCTTTCCBCEEEEETTEEEEECTTTSC
T ss_pred CCCCCCCEeeEEEECCCceEECCCCCC
Confidence 599999875432 2345789999974
No 49
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=23.04 E-value=42 Score=25.61 Aligned_cols=28 Identities=18% Similarity=0.229 Sum_probs=21.6
Q ss_pred eeeeeccccceEEeecccceeEeccCCC
Q psy7583 392 RIHVCNFCGLIAIANMRNNTFECKGCKN 419 (451)
Q Consensus 392 ~~~vC~~CG~~~~~~~~~~~~~C~~C~~ 419 (451)
.+.+|..|+..+..+...+.-+|..|+.
T Consensus 7 eiL~CP~ck~~L~~~~~~~~LiC~~cg~ 34 (69)
T 2pk7_A 7 DILACPICKGPLKLSADKTELISKGAGL 34 (69)
T ss_dssp GTCCCTTTCCCCEECTTSSEEEETTTTE
T ss_pred hheeCCCCCCcCeEeCCCCEEEcCCCCc
Confidence 4568999998877765566778999973
No 50
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=22.32 E-value=39 Score=32.31 Aligned_cols=25 Identities=24% Similarity=0.502 Sum_probs=18.1
Q ss_pred eeccccceEEee--cccceeEeccCCC
Q psy7583 395 VCNFCGLIAIAN--MRNNTFECKGCKN 419 (451)
Q Consensus 395 vC~~CG~~~~~~--~~~~~~~C~~C~~ 419 (451)
-|..||...... ....+|+|+.|..
T Consensus 237 pC~~CG~~I~~~~~~gR~t~~CP~CQ~ 263 (266)
T 1ee8_A 237 PCPACGRPVERRVVAGRGTHFCPTCQG 263 (266)
T ss_dssp BCTTTCCBCEEEESSSCEEEECTTTTT
T ss_pred CCCCCCCEeeEEEECCCceEECCCCCC
Confidence 599999875432 2345889999985
No 51
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=21.80 E-value=39 Score=24.67 Aligned_cols=29 Identities=21% Similarity=0.480 Sum_probs=18.4
Q ss_pred eeeeeccccceEEee---cc------------cceeEeccCCCC
Q psy7583 392 RIHVCNFCGLIAIAN---MR------------NNTFECKGCKNK 420 (451)
Q Consensus 392 ~~~vC~~CG~~~~~~---~~------------~~~~~C~~C~~~ 420 (451)
..++|..||-+--.. .. -..|.|+.|+..
T Consensus 2 ~~y~C~vCGyvYd~~~Gdp~~gi~pGt~fe~lP~dw~CP~Cg~~ 45 (54)
T 4rxn_A 2 KKYTCTVCGYIYDPEDGDPDDGVNPGTDFKDIPDDWVCPLCGVG 45 (54)
T ss_dssp CCEEETTTCCEECTTTCBGGGTBCTTCCGGGSCTTCBCTTTCCB
T ss_pred CceECCCCCeEECCCcCCcccCcCCCCChhHCCCCCcCcCCCCc
Confidence 358999999763211 10 125789999854
No 52
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=21.02 E-value=30 Score=26.55 Aligned_cols=27 Identities=22% Similarity=0.534 Sum_probs=18.5
Q ss_pred eeeeeccccceEEeecccceeEeccCCC
Q psy7583 392 RIHVCNFCGLIAIANMRNNTFECKGCKN 419 (451)
Q Consensus 392 ~~~vC~~CG~~~~~~~~~~~~~C~~C~~ 419 (451)
..++|..||...... ......|+.|+.
T Consensus 27 v~Y~C~~CG~~~e~~-~~d~irCp~CG~ 53 (70)
T 1twf_L 27 LKYICAECSSKLSLS-RTDAVRCKDCGH 53 (70)
T ss_dssp CCEECSSSCCEECCC-TTSTTCCSSSCC
T ss_pred EEEECCCCCCcceeC-CCCCccCCCCCc
Confidence 458999999874332 223446999985
No 53
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=20.91 E-value=40 Score=30.20 Aligned_cols=34 Identities=15% Similarity=0.523 Sum_probs=23.2
Q ss_pred eeeccccceEEeecccceeEeccCCCCCccceecCch
Q psy7583 394 HVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPY 430 (451)
Q Consensus 394 ~vC~~CG~~~~~~~~~~~~~C~~C~~~~~~~~v~iPy 430 (451)
-.|++||...... .+...|+.|+.. +..++.-+|
T Consensus 141 a~~~~~g~~m~~~--~~~~~cp~~g~~-e~RKva~~y 174 (179)
T 3m7n_A 141 ALCSNCKTEMVRE--GDILKCPECGRV-EKRKISTDY 174 (179)
T ss_dssp CBCTTTCCBCEEC--SSSEECSSSCCE-ECCCBCTTT
T ss_pred ecccccCCceEEC--CCEEECCCCCCE-EEEeccccc
Confidence 3578899887653 266789999853 456666665
No 54
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=20.71 E-value=39 Score=32.32 Aligned_cols=24 Identities=33% Similarity=0.879 Sum_probs=17.2
Q ss_pred eeccccceEEee--cccceeEeccCC
Q psy7583 395 VCNFCGLIAIAN--MRNNTFECKGCK 418 (451)
Q Consensus 395 vC~~CG~~~~~~--~~~~~~~C~~C~ 418 (451)
-|..||...... ....+|+|+.|.
T Consensus 242 pC~~CG~~I~~~~~~gR~t~~CP~CQ 267 (268)
T 1k82_A 242 PCRVCGTPIVATKHAQRATFYCRQCQ 267 (268)
T ss_dssp BCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred CCCCCCCEeeEEEECCCceEECCCCC
Confidence 499999875432 234578899996
No 55
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=20.50 E-value=32 Score=24.82 Aligned_cols=28 Identities=25% Similarity=0.586 Sum_probs=18.1
Q ss_pred eeeeccccceEEe---ecc------------cceeEeccCCCC
Q psy7583 393 IHVCNFCGLIAIA---NMR------------NNTFECKGCKNK 420 (451)
Q Consensus 393 ~~vC~~CG~~~~~---~~~------------~~~~~C~~C~~~ 420 (451)
.++|..||-+--. +.. -..|.|+.|+..
T Consensus 3 ~y~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cg~~ 45 (52)
T 1e8j_A 3 IYVCTVCGYEYDPAKGDPDSGIKPGTKFEDLPDDWACPVCGAS 45 (52)
T ss_dssp CEECSSSCCCCCTTTCCTTTTCCSSCCTTSSCTTCCCSSSCCC
T ss_pred cEEeCCCCeEEcCCcCCcccCcCCCCchHHCCCCCcCCCCCCc
Confidence 5899999977321 110 135689999864
No 56
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=20.23 E-value=40 Score=32.33 Aligned_cols=24 Identities=25% Similarity=0.552 Sum_probs=17.3
Q ss_pred eeccccceEEee--cccceeEeccCC
Q psy7583 395 VCNFCGLIAIAN--MRNNTFECKGCK 418 (451)
Q Consensus 395 vC~~CG~~~~~~--~~~~~~~C~~C~ 418 (451)
-|..||...... ....+|+|+.|.
T Consensus 247 pC~~CG~~I~~~~~~gR~t~~CP~CQ 272 (273)
T 3u6p_A 247 PCKRCGTPIEKTVVAGRGTHYCPRCQ 272 (273)
T ss_dssp BCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred CCCCCCCeEEEEEECCCCeEECCCCC
Confidence 599999876432 234578899996
Done!