Query psy7583
Match_columns 451
No_of_seqs 181 out of 1443
Neff 6.1
Searched_HMMs 13730
Date Fri Aug 16 22:08:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7583.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/7583hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1twfb_ e.29.1.1 (B:) RBP2 {Ba 100.0 1E-117 9E-122 1025.1 35.1 404 1-450 761-1201(1207)
2 d1smyc_ e.29.1.1 (C:) RNA-poly 100.0 2E-105 2E-109 917.2 23.7 355 74-450 655-1103(1119)
3 d1smyc_ e.29.1.1 (C:) RNA-poly 92.6 0.012 8.6E-07 65.2 0.6 70 10-82 639-708 (1119)
4 d1twfb_ e.29.1.1 (B:) RBP2 {Ba 82.8 0.11 7.9E-06 57.7 -0.2 37 43-82 806-842 (1207)
5 d1yuza2 g.41.5.1 (A:167-202) N 77.9 0.52 3.8E-05 30.4 1.9 30 389-421 1-30 (36)
6 d1nnqa2 g.41.5.1 (A:135-171) R 68.7 1.1 8.3E-05 28.8 1.9 28 391-421 3-30 (37)
7 d1lkoa2 g.41.5.1 (A:148-191) R 66.3 1.2 8.9E-05 29.8 1.7 31 388-420 3-33 (44)
8 d1vqoz1 g.41.8.1 (Z:10-82) Rib 46.3 4.3 0.00031 29.9 1.9 28 392-419 26-53 (73)
9 d1jj2y_ g.41.8.1 (Y:) Ribosoma 45.0 4.6 0.00033 29.7 1.9 28 392-419 26-53 (73)
10 d2ak3a2 g.41.2.1 (A:125-161) M 44.3 4.5 0.00033 25.8 1.5 26 394-419 3-30 (37)
11 d1hk8a_ c.7.1.3 (A:) Class III 38.6 6.1 0.00044 39.6 2.3 29 392-420 514-542 (561)
12 d1x3za1 d.3.1.4 (A:8-327) Pept 38.4 18 0.0013 33.4 5.5 81 366-450 96-206 (320)
13 d1pfta_ g.41.3.1 (A:) Transcri 38.1 9.6 0.0007 25.7 2.6 26 394-419 6-32 (50)
14 d2f4ma1 d.3.1.4 (A:164-450) Pe 34.9 20 0.0015 32.6 5.1 81 366-450 58-165 (287)
15 d1neea2 g.59.1.1 (A:99-135) Zi 34.6 13 0.00093 23.6 2.6 31 395-425 3-36 (37)
16 d1e4va2 g.41.2.1 (A:122-156) M 34.4 7.7 0.00056 24.3 1.4 26 394-419 3-30 (35)
17 d2dsxa1 g.41.5.1 (A:1-52) Rubr 34.2 8.1 0.00059 26.4 1.6 29 392-420 2-45 (52)
18 d1zina2 g.41.2.1 (A:126-160) M 33.9 8.3 0.0006 24.2 1.5 26 394-419 3-30 (35)
19 d1d0qa_ g.41.3.2 (A:) Zinc-bin 31.5 41 0.003 25.2 5.8 45 394-438 37-91 (102)
20 d1vd4a_ g.41.3.1 (A:) Transcri 31.0 13 0.00093 26.3 2.3 29 391-419 12-47 (62)
21 d1akya2 g.41.2.1 (A:131-168) M 30.4 10 0.00075 24.2 1.6 26 394-419 3-30 (38)
22 d1k3xa3 g.39.1.8 (A:223-262) E 30.2 12 0.0009 23.9 2.0 24 395-418 14-39 (40)
23 d1r2za3 g.39.1.8 (A:229-274) D 30.1 12 0.00088 24.6 2.0 24 395-418 20-45 (46)
24 d1ee8a3 g.39.1.8 (A:211-266) D 29.7 14 0.001 25.3 2.4 26 395-420 27-54 (56)
25 d2gmga1 a.4.5.82 (A:1-105) Hyp 29.7 6.7 0.00049 30.7 0.6 26 394-420 68-93 (105)
26 d1pd0a5 g.41.10.1 (A:216-300) 29.7 9.3 0.00068 28.4 1.5 29 392-420 12-44 (85)
27 d1s3ga2 g.41.2.1 (A:126-160) M 28.9 11 0.00082 23.5 1.5 26 394-419 3-30 (35)
28 d1x6ha1 g.37.1.1 (A:44-80) Tra 28.8 8 0.00058 24.0 0.8 12 392-403 3-14 (37)
29 d1k81a_ g.59.1.1 (A:) Zinc-bin 27.8 11 0.00078 23.9 1.3 30 395-424 2-34 (36)
30 d1tdza3 g.39.1.8 (A:225-271) D 26.8 16 0.0012 24.1 2.1 25 395-419 20-46 (47)
31 d1iroa_ g.41.5.1 (A:) Rubredox 25.8 14 0.001 25.2 1.7 28 393-420 3-45 (53)
32 d1l5ia_ d.89.1.4 (A:) DNA-bind 25.4 10 0.00073 30.3 1.0 27 9-35 3-29 (118)
33 d1dx8a_ g.41.5.1 (A:) Rubredox 24.8 15 0.0011 26.6 1.7 28 393-420 7-49 (70)
34 d6rxna_ g.41.5.1 (A:) Rubredox 24.6 13 0.00091 24.6 1.2 28 393-420 3-38 (45)
35 d1k82a3 g.39.1.8 (A:225-268) D 23.4 19 0.0014 23.4 2.0 24 395-418 18-43 (44)
36 d1dl6a_ g.41.3.1 (A:) Transcri 22.0 20 0.0014 24.8 1.9 31 389-419 7-38 (58)
37 d1s24a_ g.41.5.1 (A:) Two-iron 21.9 26 0.0019 24.1 2.5 30 391-420 2-46 (56)
38 d1gh9a_ g.41.6.1 (A:) Hypothet 21.8 48 0.0035 23.2 3.9 49 391-441 2-56 (71)
No 1
>d1twfb_ e.29.1.1 (B:) RBP2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=100.00 E-value=1.2e-117 Score=1025.08 Aligned_cols=404 Identities=65% Similarity=1.115 Sum_probs=359.1
Q ss_pred CcccccCcccCCccceEeccCCCccceeccccccccCCCCCCcceeeeeeeeecccCCCCcEEeccceeccceEeeeccc
Q psy7583 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSMEYL 80 (451)
Q Consensus 1 ~G~~~~n~~~R~D~~~~~L~yPQ~Plv~T~~~~~~~~d~~p~G~NaiVAV~sytgynqed~~~~n~~~i~rG~~r~~~~~ 80 (451)
||+|++|++.|.|+++|+|+|||+|||+|+.+++++++++|.|+||+|||
T Consensus 761 ~G~~~~~~~~r~D~~~~~l~~pQ~Plv~t~~~~~~~~~e~p~G~N~iVAv------------------------------ 810 (1207)
T d1twfb_ 761 MGVFLTNYNVRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAI------------------------------ 810 (1207)
T ss_dssp CBCSCTTTTTCCCSEEEEESSCBCCSEECTTHHHHTTTTSCCCEEEEEEE------------------------------
T ss_pred CCccccccceeccccceeEecCCCceeeccchhhhhhhcccchhceEEEE------------------------------
Confidence 79999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCcceEEEEeeccccccccceeeccceeccCceeEEEEEEEEeeecccCCCcceeeecCCcccccCCchhhhhc
Q psy7583 81 RFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDK 160 (451)
Q Consensus 81 ~~~el~~G~N~~Va~msy~GYn~EDAiIiNkssidRG~f~s~~~k~~~~~~~~~~~~~~~~f~~P~~~~~~~~~~~~~~~ 160 (451)
|||+||||||||||||+|++||||||+||++|++++++...+.++.+..|......+.+...|++
T Consensus 811 ---------------msy~GYN~EDAiIiNk~si~rG~f~s~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 875 (1207)
T d1twfb_ 811 ---------------ACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDK 875 (1207)
T ss_dssp ---------------CBSSSTTTTTEEEEEHHHHHTTTTCEEEEEEEEECCCCSCTTCCCEESCCCCSSSCBCCSSCGGG
T ss_pred ---------------EeccCcccccccccchhhhhhcccceeeeEEEEEEeccccccccccccccccccccccchhhhhc
Confidence 99999999999999999999999999999999999988887778888888776666667778999
Q ss_pred cCcCCCcccCcEEeCCCEEEEEeeecCCCCccccccccccccceeeEEecCCcceEEEEEEEEeccCCeeEEEEEEeecC
Q psy7583 161 LDDDGIIAPGLRVSGDDVVIGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240 (451)
Q Consensus 161 LD~dGi~~vG~~v~~gDiligK~~~~~~~~~~~~~~~~~~~~~d~s~~~~~~e~g~Vd~V~i~~~~~g~~~vkv~ir~~R 240 (451)
||+||||++|++|++||+||||++|....++.+........++|.|+.++.+|+|+||+|.++.+.++.+.+||+||+.|
T Consensus 876 Ld~dGi~~~G~~v~~gdilvgk~~p~~~~~~~~~~~~~~~~~~~~s~~~~~~~~g~V~~v~~~~~~~~~~~~kv~i~~~R 955 (1207)
T d1twfb_ 876 LDDDGLIAPGVRVSGEDVIIGKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLVTTNQDGLKFVKVRVRTTK 955 (1207)
T ss_dssp CCTTSBCCTTCEECTTCEEECEECCCC-------------CCBBCCEECCTTCCEEEEEEEEEECSSSCEEEEEEEEEEE
T ss_pred ccccccccccccccCCceeeeeeeccCCchhhhhhccccccccceeEEccCCCCeEEEEEEEeecccccceeeEEEEEEe
Confidence 99999999999999999999999997654433322223346789999999999999999999999999999999999999
Q ss_pred CCccccccccccCCccEEeeeehhh------------------------------------HhhhcCCceeecCCCCccc
Q psy7583 241 IPQIGDKFASRHGQKGTCGIQYRQE------------------------------------VSSNKGEIGDATPFNDAVN 284 (451)
Q Consensus 241 ~p~IGDKFsSRHGQKGvvs~i~~~e------------------------------------~~~~~G~~~d~tpF~~~~~ 284 (451)
+|+||||||||||||||||+|||+| +|++.|.+.|+|||++. .
T Consensus 956 ~p~iGDKfasRhGqKGv~s~i~p~eDMPf~~dG~~pDiI~NP~g~PSRMtiGql~E~~~gk~~~~~g~~~d~t~F~~~-~ 1034 (1207)
T d1twfb_ 956 IPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLSKVAALSGNEGDASPFTDI-T 1034 (1207)
T ss_dssp CCCTTCEEECTTSCEEEEEEEECTTTSCEETTSCCCSEEECGGGSTTTTCHHHHHHHHHHHHHHHHCSCEECCSSSSC-C
T ss_pred ccchhhhhhhccCCcceeeeeechhhCCcCCCCCCccEEECCCcCcccCcHHHHHHHHHHHHHHhcCCccccCCCCCc-c
Confidence 9999999999999999999999999 57899999999999987 8
Q ss_pred HHHHHHHHHHhCCCCCCcEEEEcCccCceeeeeeeeeeeeEeeeccccCceeeeeeccCeeeeeecCCCcccccCccccc
Q psy7583 285 VQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFG 364 (451)
Q Consensus 285 ~~~~~~~l~~~g~~~~g~~~~~~g~tG~~~~~~i~~G~~yy~rL~Hmv~dK~~~R~~G~~~~lt~Qp~~Gr~~~Gg~r~G 364 (451)
.+++++.|.++||+++|+|.||||+|||+|+++||+|++|||||+|||+||+|||++||++.|||||++||+++||||||
T Consensus 1035 ~~~~~~~L~~~g~~~~G~e~ly~G~tG~~~~~~i~~G~~yy~rL~HmV~DK~~~Rs~Gp~~~lT~QP~~Gr~~~GG~R~G 1114 (1207)
T d1twfb_ 1035 VEGISKLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFG 1114 (1207)
T ss_dssp HHHHHHHHHTTTSCTTSEECEECTTTCCBCSSCEEEEEEEEEEBSSCGGGTCEEECCCC----------------CCCCC
T ss_pred HHHHHHHHHHcCCCCCCCEEEECCCCCCCccceEEEehhHhhhhhhhhccccEeeccCCCCccccCCCCccccCCCccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHhcchhHHHHHhhcccCCceeeeeeccccceEEee-cccceeEeccCCCCCccceecCchhHHHHHHHHHhCC
Q psy7583 365 EMERDCQISHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIAN-MRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMN 443 (451)
Q Consensus 365 EME~~~l~~~g~~~~l~e~l~~~SD~~~~~vC~~CG~~~~~~-~~~~~~~C~~C~~~~~~~~v~iPy~~klL~~EL~sm~ 443 (451)
|||+|||+|||||++|+|||+.+||.+.++||.+||++++.. .+...+.|+.|+++.++..+.+|||||||+|||+|||
T Consensus 1115 EME~dal~a~Gaa~~L~e~l~~~SD~~~~~vc~~cg~~~~~~~~~~~~~~c~~c~~~~~i~~~~iPy~fk~l~~EL~sm~ 1194 (1207)
T d1twfb_ 1115 EMERDCMIAHGAASFLKERLMEASDAFRVHICGICGLMTVIAKLNHNQFECKGCDNKIDIYQIHIPYAAKLLFQELMAMN 1194 (1207)
T ss_dssp HHHHHHHHHHTCHHHHHHHHCCSSCCCEEEEESSSCSSCCEEETTTTEEEBTTTTBSSSEEEEECCHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHhHHHHHHHHhhccCCccceeccccCCceEEEecccccceeecCCCCCCCccccCCCHHHHHHHHHHHHCC
Confidence 999999999999999999999999999999999999998753 4567889999999899999999999999999999999
Q ss_pred cccEEEE
Q psy7583 444 IAPRLMV 450 (451)
Q Consensus 444 I~~r~~~ 450 (451)
|++||.+
T Consensus 1195 i~~~l~~ 1201 (1207)
T d1twfb_ 1195 ITPRLYT 1201 (1207)
T ss_dssp BCCEEES
T ss_pred CceEEEe
Confidence 9999986
No 2
>d1smyc_ e.29.1.1 (C:) RNA-polymerase beta {Thermus thermophilus [TaxId: 274]}
Probab=100.00 E-value=2.3e-105 Score=917.19 Aligned_cols=355 Identities=27% Similarity=0.395 Sum_probs=303.9
Q ss_pred EeeeccccccccCCCcceEEEEeeccccccccceeeccceeccCceeEEEEEEEEeeecccCCCcceeeecCCcccccCC
Q psy7583 74 FRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGM 153 (451)
Q Consensus 74 ~r~~~~~~~~el~~G~N~~Va~msy~GYn~EDAiIiNkssidRG~f~s~~~k~~~~~~~~~~~~~~~~f~~P~~~~~~~~ 153 (451)
.++.+.+.+.++|+|+|++||+|||+||||||||||||+|+|||||||++|++|++++++...+.++.+..+. ..
T Consensus 655 l~~~~~~~~~~~p~G~NaiVAv~sytGYn~EDAiIiNkssidRG~~~s~~~k~y~~~~~~~~~~~~~~~~~~~-----~~ 729 (1119)
T d1smyc_ 655 LADGPASENGFLALGQNVLVAIMPFDGYNFEDAIVISEELLKRDFYTSIHIERYEIEARDTKLGPERITRDIP-----HL 729 (1119)
T ss_dssp SBCCTTBSSSSBCSSEEEEEECSCCSSTTCSSEEEEETHHHHTTCSCEEEEEEEEEEEECCTTCCCBCCSCCT-----TS
T ss_pred eccCcccccccccCccceEEEEecccccchhhhhhhcchhhhccccceeeeeEEEeeeeeccCCCceecccCc-----Cc
Confidence 4445555566666666666666999999999999999999999999999999999998877665544332211 22
Q ss_pred chhhhhccCcCCCcccCcEEeCCCEEEEEeeecCCCCcccc-------ccccccccceeeEEecCCcceEEEEEEEEecc
Q psy7583 154 RNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENEDELE-------GTTKRFSKRDGSTFLRNSETGIVDQVMLTLNV 226 (451)
Q Consensus 154 ~~~~~~~LD~dGi~~vG~~v~~gDiligK~~~~~~~~~~~~-------~~~~~~~~~d~s~~~~~~e~g~Vd~V~i~~~~ 226 (451)
+...|++||+||||+||++|++|||||||++|......... ...+...++|.|+.++.+++|+||+|.+..+.
T Consensus 730 ~~~~~~~Ld~dGi~~~G~~v~~gdili~k~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~s~~~~~~~~g~v~~v~~~~~~ 809 (1119)
T d1smyc_ 730 SEAALRDLDEEGVVRIGAEVKPGDILVGRTSFKGESEPTPEERLLRSIFGEKARDVKDTSLRVPPGEGGIVVRTVRLRRG 809 (1119)
T ss_dssp CSTTTGGGTTTSBCCTTCBCCTTCEEECCEECSSSSSCCHHHHHHHHHHHSCSCCCEECCEECCSSCCCEEEEEEEECSS
T ss_pred ChhhHhhccccCCcCCCCEeCCCCEEEEEeccCCCCCCChHHhhhhcccccccceeeeeeeccCCCCCCEEEEEEEEecc
Confidence 35689999999999999999999999999998654321100 01133456899999999999999999887654
Q ss_pred C--------CeeEEEEEEeecCCCccccccccccCCccEEeeeehhh---------------------------------
Q psy7583 227 D--------GYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQE--------------------------------- 265 (451)
Q Consensus 227 ~--------g~~~vkv~ir~~R~p~IGDKFsSRHGQKGvvs~i~~~e--------------------------------- 265 (451)
+ +...+||++|++|+|+||||||||||||||||+|||||
T Consensus 810 ~~~~~~~~~~~~~vkv~~r~~R~p~iGDKfssRHGQKGv~g~i~~~eDMPft~~Gi~PDiIiNPhg~PSRMTiG~liE~~ 889 (1119)
T d1smyc_ 810 DPGVELKPGVREVVRVYVAQKRKLQVGDKLANRHGNKGVVAKILPVEDMPHLPDGTPVDVILNPLGVPSRMNLGQILETH 889 (1119)
T ss_dssp CSSCCCCTTEEEEEEEEEEEEECCCTTCEEECTTSCEEEEEEEECTTTSCBCSSSCBCSEEECSTTTTTTTBTHHHHHHH
T ss_pred ccccccCCCcceEEEEEEeeeeeccccchhhhhccCCccceeeechhhCccccCCcceeEEeccccccccccHHHHHHHH
Confidence 4 35689999999999999999999999999999999999
Q ss_pred ---HhhhcCCceeecCCCCcccHHHHHHHHHHh-------------------------------------------CCCC
Q psy7583 266 ---VSSNKGEIGDATPFNDAVNVQKISTLLQEY-------------------------------------------GYQL 299 (451)
Q Consensus 266 ---~~~~~G~~~d~tpF~~~~~~~~~~~~l~~~-------------------------------------------g~~~ 299 (451)
+|++.|.+.|+|||... +.+++.+.|.++ ||++
T Consensus 890 ~gk~~~~~g~~~d~t~F~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 968 (1119)
T d1smyc_ 890 LGLAGYFLGQRYISPIFDGA-KEPEIKELLAQAFEVYFGKRKGEGFGVDKREVEVLRRAEKLGLVTPGKTPEEQLKELFL 968 (1119)
T ss_dssp HHHHHHHTTCEEECCSSSSC-CHHHHHHHHHHHHHHHHHHHHHTTCCCBHHHHHHHHHHHTTTSSCTTSCHHHHHHHHHH
T ss_pred HHHHHhhcCceeeccCCCCC-cHHHHHHHHHHHHHhhccccccccccccchhHHHHHHHhhcccCCCCCChHHHHhhccC
Confidence 57899999999999987 888888877653 5567
Q ss_pred CCcEEEEcCccCceeeeeeeeeeeeEeeeccccCceeeeeeccCeeeeeecCCCcccccCccccchhhHHHHHhcchhHH
Q psy7583 300 RGNEVMFNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQF 379 (451)
Q Consensus 300 ~g~~~~~~g~tG~~~~~~i~~G~~yy~rL~Hmv~dK~~~R~~G~~~~lt~Qp~~Gr~~~Gg~r~GEME~~~l~~~g~~~~ 379 (451)
+|+|.||||+||++|+++||+||+|||||+|||+||+|||++||++.|||||++||+|+|||||||||||||+|||||++
T Consensus 969 ~G~e~my~G~TG~~~~~~If~G~~yYqrL~HmV~DK~haRs~Gp~~~lTrQP~~GRsr~GGlR~GEMErd~LiahGas~~ 1048 (1119)
T d1smyc_ 969 QGKVVLYDGRTGEPIEGPIVVGQMFIMKLYHMVEDKMHARSTGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGAAHT 1048 (1119)
T ss_dssp TTEECCBCTTTSCBCSSCEEEEEEEEEEBCCCGGGSCEEESSCCBCSSSCCBCCCSSSCCCEEECHHHHHHHHHTTCHHH
T ss_pred CCCEEEECCCCCCEeCCeEEEEechhhccchhhCcCceeeccCCCchhhCCCCCcccCCCCccchhhHhHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcccCCceeeeeeccccceEEeecccceeEeccCCCCCccceecCchhHHHHHHHHHhCCcccEEEE
Q psy7583 380 LRERLFEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMV 450 (451)
Q Consensus 380 l~e~l~~~SD~~~~~vC~~CG~~~~~~~~~~~~~C~~C~~~~~~~~v~iPy~~klL~~EL~sm~I~~r~~~ 450 (451)
|+|||+++||++..++|.-| .|.++.++.++.||||||||+|||+||||++||.+
T Consensus 1049 L~erl~~~SD~~~~~~~~~~----------------~~~~~~~i~~v~iPyafKlL~qEL~sm~i~~~l~~ 1103 (1119)
T d1smyc_ 1049 LQEMLTLKSDDIEGRNAAYE----------------AIIKGEDVPEPSVPESFRVLVKELQALALDVQTLD 1103 (1119)
T ss_dssp HHHHHTTTTTCHHHHHHHHH----------------HHHHTCCCCCCCCCHHHHHHHHHHHHSSCEEEEEC
T ss_pred HHHHhhcccccccceeEEEC----------------CeECCCCCCCCCCChHHHHHHHHHHHCCCCeEEEe
Confidence 99999999999987776432 23345679999999999999999999999999975
No 3
>d1smyc_ e.29.1.1 (C:) RNA-polymerase beta {Thermus thermophilus [TaxId: 274]}
Probab=92.64 E-value=0.012 Score=65.17 Aligned_cols=70 Identities=24% Similarity=0.378 Sum_probs=59.6
Q ss_pred cCCccceEeccCCCccceeccccccccCCCCCCcceeeeeeeeecccCCCCcEEeccceeccceEeeeccccc
Q psy7583 10 VRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSMEYLRF 82 (451)
Q Consensus 10 ~R~D~~~~~L~yPQ~Plv~T~~~~~~~~d~~p~G~NaiVAV~sytgynqed~~~~n~~~i~rG~~r~~~~~~~ 82 (451)
.|.+.......+++.+++.+..+. .+++|+|+||+|||||||||||||++++|+++++||++++..+..+
T Consensus 639 q~p~~~~~~~~~~~~~l~~~~~~~---~~~~p~G~NaiVAv~sytGYn~EDAiIiNkssidRG~~~s~~~k~y 708 (1119)
T d1smyc_ 639 QRPRVVVGQRVRKGDLLADGPASE---NGFLALGQNVLVAIMPFDGYNFEDAIVISEELLKRDFYTSIHIERY 708 (1119)
T ss_dssp CCBCCCSSCCBCTTCCSBCCTTBS---SSSBCSSEEEEEECSCCSSTTCSSEEEEETHHHHTTCSCEEEEEEE
T ss_pred CCccccccceeecCceeccCcccc---cccccCccceEEEEecccccchhhhhhhcchhhhccccceeeeeEE
Confidence 455666666778888888777654 5789999999999999999999999999999999999998887654
No 4
>d1twfb_ e.29.1.1 (B:) RBP2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=82.83 E-value=0.11 Score=57.69 Aligned_cols=37 Identities=46% Similarity=0.839 Sum_probs=31.1
Q ss_pred cceeeeeeeeecccCCCCcEEeccceeccceEeeeccccc
Q psy7583 43 GINSIVAILCYTGYNQEDSVILNASAVERGYFRSMEYLRF 82 (451)
Q Consensus 43 G~NaiVAV~sytgynqed~~~~n~~~i~rG~~r~~~~~~~ 82 (451)
-+-|+.+- +||||||++++|+.+++||++++.++..+
T Consensus 806 ~iVAvmsy---~GYN~EDAiIiNk~si~rG~f~s~~~k~~ 842 (1207)
T d1twfb_ 806 AIVAIACY---SGYNQEDSMIMNQSSIDRGLFRSLFFRSY 842 (1207)
T ss_dssp EEEEECBS---SSTTTTTEEEEEHHHHHTTTTCEEEEEEE
T ss_pred eEEEEEec---cCcccccccccchhhhhhcccceeeeEEE
Confidence 34566666 99999999999999999999888877654
No 5
>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}
Probab=77.85 E-value=0.52 Score=30.35 Aligned_cols=30 Identities=27% Similarity=0.629 Sum_probs=21.7
Q ss_pred CceeeeeeccccceEEeecccceeEeccCCCCC
Q psy7583 389 DPYRIHVCNFCGLIAIANMRNNTFECKGCKNKT 421 (451)
Q Consensus 389 D~~~~~vC~~CG~~~~~~~~~~~~~C~~C~~~~ 421 (451)
|.-..|+|..||-+.... -.-.|+.|+...
T Consensus 1 D~~~~~vC~vCGyi~~g~---~Pe~CPvCg~~~ 30 (36)
T d1yuza2 1 DDDKFHLCPICGYIHKGE---DFEKCPICFRPK 30 (36)
T ss_dssp CSCCEEECSSSCCEEESS---CCSBCTTTCCBG
T ss_pred CCCCEEECCCCCCEeeCC---CCCcCCCCCCcH
Confidence 556789999999986542 233699998643
No 6
>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=68.67 E-value=1.1 Score=28.82 Aligned_cols=28 Identities=21% Similarity=0.598 Sum_probs=20.4
Q ss_pred eeeeeeccccceEEeecccceeEeccCCCCC
Q psy7583 391 YRIHVCNFCGLIAIANMRNNTFECKGCKNKT 421 (451)
Q Consensus 391 ~~~~vC~~CG~~~~~~~~~~~~~C~~C~~~~ 421 (451)
-..|+|..||-+.... -.-.|+.|+...
T Consensus 3 ~~~~~C~vCG~i~~g~---~P~~CPvCg~~~ 30 (37)
T d1nnqa2 3 KKVYICPICGYTAVDE---APEYCPVCGAPK 30 (37)
T ss_dssp SCEEECTTTCCEEESC---CCSBCTTTCCBG
T ss_pred CcEEECCCCCCEecCC---CCCcCCCCCCcH
Confidence 4679999999987642 233699998643
No 7
>d1lkoa2 g.41.5.1 (A:148-191) Rubrerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}
Probab=66.33 E-value=1.2 Score=29.78 Aligned_cols=31 Identities=16% Similarity=0.420 Sum_probs=22.2
Q ss_pred CCceeeeeeccccceEEeecccceeEeccCCCC
Q psy7583 388 SDPYRIHVCNFCGLIAIANMRNNTFECKGCKNK 420 (451)
Q Consensus 388 SD~~~~~vC~~CG~~~~~~~~~~~~~C~~C~~~ 420 (451)
.|....|+|.+||-+.... .-.-.|+.|+-.
T Consensus 3 k~~~~~W~C~~CGyi~~g~--~aP~~CPvC~~p 33 (44)
T d1lkoa2 3 REQATKWRCRNCGYVHEGT--GAPELCPACAHP 33 (44)
T ss_dssp EEEEEEEEETTTCCEEEEE--ECCSBCTTTCCB
T ss_pred CCCCeEEEcCCCCcEEECC--CCCCcCCCCCCc
Confidence 4566789999999987643 123369999854
No 8
>d1vqoz1 g.41.8.1 (Z:10-82) Ribosomal protein L37ae {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=46.32 E-value=4.3 Score=29.86 Aligned_cols=28 Identities=21% Similarity=0.548 Sum_probs=21.9
Q ss_pred eeeeeccccceEEeecccceeEeccCCC
Q psy7583 392 RIHVCNFCGLIAIANMRNNTFECKGCKN 419 (451)
Q Consensus 392 ~~~vC~~CG~~~~~~~~~~~~~C~~C~~ 419 (451)
.-+.|+.||.....-.-.+.|.|..|+.
T Consensus 26 ~ky~Cp~Cgk~~vkR~a~GIW~C~kC~~ 53 (73)
T d1vqoz1 26 EDHACPNCGEDRVDRQGTGIWQCSYCDY 53 (73)
T ss_dssp SCBCCSSSSCSCEEEEETTEEEETTTCC
T ss_pred CCccCCCCCCceeEEEEEEEEECCCCCC
Confidence 3467999998876544568999999984
No 9
>d1jj2y_ g.41.8.1 (Y:) Ribosomal protein L37ae {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=45.01 E-value=4.6 Score=29.69 Aligned_cols=28 Identities=21% Similarity=0.644 Sum_probs=21.6
Q ss_pred eeeeeccccceEEeecccceeEeccCCC
Q psy7583 392 RIHVCNFCGLIAIANMRNNTFECKGCKN 419 (451)
Q Consensus 392 ~~~vC~~CG~~~~~~~~~~~~~C~~C~~ 419 (451)
.-+.|+.||.....-...+.|.|..|+.
T Consensus 26 ~ky~Cp~Cgk~~vkR~a~GIW~C~kC~~ 53 (73)
T d1jj2y_ 26 KKHKCPVCGFKKLKRAGTGIWMCGHCGY 53 (73)
T ss_dssp SCBCCSSSCCSCEEEEETTEEEETTTCC
T ss_pred CCccCCCCCCCceEEEEEEEEECCCCCC
Confidence 3467999998766544567999999974
No 10
>d2ak3a2 g.41.2.1 (A:125-161) Microbial and mitochondrial ADK, insert "zinc finger" domain {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}
Probab=44.29 E-value=4.5 Score=25.81 Aligned_cols=26 Identities=8% Similarity=-0.225 Sum_probs=18.4
Q ss_pred eeeccccceEEe--ecccceeEeccCCC
Q psy7583 394 HVCNFCGLIAIA--NMRNNTFECKGCKN 419 (451)
Q Consensus 394 ~vC~~CG~~~~~--~~~~~~~~C~~C~~ 419 (451)
+||+.||.+-+. ++.+....|-.|+.
T Consensus 3 ~vc~~cG~~Yh~~~~pPk~~g~CD~cg~ 30 (37)
T d2ak3a2 3 WIHPGSGRVYNIEFNPPKTMGIDDLTGE 30 (37)
T ss_dssp EEETTTTEEEETTTBCCSSTTBCTTTCC
T ss_pred eeeCCcCChhhhccCCccccCCccCCCC
Confidence 799999988653 33344557888874
No 11
>d1hk8a_ c.7.1.3 (A:) Class III anaerobic ribonucleotide reductase NRDD subunit {Bacteriophage T4 [TaxId: 10665]}
Probab=38.64 E-value=6.1 Score=39.58 Aligned_cols=29 Identities=24% Similarity=0.500 Sum_probs=18.8
Q ss_pred eeeeeccccceEEeecccceeEeccCCCC
Q psy7583 392 RIHVCNFCGLIAIANMRNNTFECKGCKNK 420 (451)
Q Consensus 392 ~~~vC~~CG~~~~~~~~~~~~~C~~C~~~ 420 (451)
.+.+|.+||...........+.|+.|++.
T Consensus 514 ~~~~C~~Cg~~~~~~~~~~~~~CP~CGs~ 542 (561)
T d1hk8a_ 514 PVDKCFTCGSTHEMTPTENGFVCSICGET 542 (561)
T ss_dssp CEEEETTTCCCSCCEECSSSEECSSSCCC
T ss_pred CCccCCCCCCcCccccCCCCccCcCCCCC
Confidence 55699999964322222245789999853
No 12
>d1x3za1 d.3.1.4 (A:8-327) Peptide:N-glycanase 1, PNG1 {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=38.43 E-value=18 Score=33.43 Aligned_cols=81 Identities=19% Similarity=0.266 Sum_probs=54.9
Q ss_pred hhHHHHHhcchhHHHHHhhcccCCceeeeeeccccceEE-------e-ec----------ccceeEeccCCCCCccceec
Q psy7583 366 MERDCQISHGAAQFLRERLFEVSDPYRIHVCNFCGLIAI-------A-NM----------RNNTFECKGCKNKTQISQVR 427 (451)
Q Consensus 366 ME~~~l~~~g~~~~l~e~l~~~SD~~~~~vC~~CG~~~~-------~-~~----------~~~~~~C~~C~~~~~~~~v~ 427 (451)
-+.|+|+-.-.-++=+|.+.+. ....|..||.... . .+ +...|.|..|+..+.+..+.
T Consensus 96 ~y~d~~l~eLl~wFk~~fF~wv----n~p~C~~Cg~~t~~~~~~~g~~~p~~~e~~~~a~~vE~y~C~~C~~~~RFPRyn 171 (320)
T d1x3za1 96 IYTDYLVKELLRYFKQDFFKWC----NKPDCNHCGQNTSENMTPLGSQGPNGEESKFNCGTVEIYKCNRCGNITRFPRYN 171 (320)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEC----SSCCCSSSCSSCCSSEEEEEEECCCSGGGSSSEEEEEEEEETTTCCEEEEEEEC
T ss_pred cHHHHHHHHHHHHHHhhhceec----CCCCCCcCCCCcccccccccCCCCCchhhcCCCCeEEEEECCCCCCccccCCcC
Confidence 3677776655555555555442 3457999996531 1 11 12368899999888888888
Q ss_pred Cch------------hHHHHHHHHHhCCcccEEEE
Q psy7583 428 LPY------------AAKLLFQELMSMNIAPRLMV 450 (451)
Q Consensus 428 iPy------------~~klL~~EL~sm~I~~r~~~ 450 (451)
-|. -+.++..=|.|||...|+..
T Consensus 172 ~p~~LL~tR~GRcgEwan~F~~~~ra~g~~aR~V~ 206 (320)
T d1x3za1 172 DPIKLLETRKGRCGEWCNLFTLILKSFGLDVRYVW 206 (320)
T ss_dssp CHHHHHHHCEECHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CHHHHHhhcCcchHHHHHHHHHHHHHcCCceEEEE
Confidence 883 45677778999999998763
No 13
>d1pfta_ g.41.3.1 (A:) Transcription initiation factor TFIIB, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=38.06 E-value=9.6 Score=25.65 Aligned_cols=26 Identities=23% Similarity=0.508 Sum_probs=19.5
Q ss_pred eeeccccce-EEeecccceeEeccCCC
Q psy7583 394 HVCNFCGLI-AIANMRNNTFECKGCKN 419 (451)
Q Consensus 394 ~vC~~CG~~-~~~~~~~~~~~C~~C~~ 419 (451)
.+|+.||+. ...+..++..+|..|+-
T Consensus 6 ~~Cp~Cgs~~iv~D~~~Ge~vC~~CG~ 32 (50)
T d1pfta_ 6 KVCPACESAELIYDPERGEIVCAKCGY 32 (50)
T ss_dssp CSCTTTSCCCEEEETTTTEEEESSSCC
T ss_pred ccCcCCCCCcEEEECCCCeEecccCCc
Confidence 479999876 34556677888999973
No 14
>d2f4ma1 d.3.1.4 (A:164-450) Peptide:N-glycanase 1, PNG1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=34.93 E-value=20 Score=32.61 Aligned_cols=81 Identities=16% Similarity=0.165 Sum_probs=51.4
Q ss_pred hhHHHHHhcchhHHHHHhhcccCCceeeeeeccccceEEeec---------------ccceeEeccCCCCCccceecCch
Q psy7583 366 MERDCQISHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANM---------------RNNTFECKGCKNKTQISQVRLPY 430 (451)
Q Consensus 366 ME~~~l~~~g~~~~l~e~l~~~SD~~~~~vC~~CG~~~~~~~---------------~~~~~~C~~C~~~~~~~~v~iPy 430 (451)
.+.|+|+..-.-++-+|.+.+. ....|..||....... +...|.|..|+....+..+.-|.
T Consensus 58 ~~~d~ll~eLL~wFk~~fF~wv----~~ppC~~C~~~~~~~~~~~~p~~~e~~~ga~rVE~~~C~~C~~~~rfpRy~~p~ 133 (287)
T d2f4ma1 58 SDEDFLLLELLHWFKEEFFRWV----NNIVCSKCGGETRSRDEALLPNDDELKWGAKNVENHYCDACQLSNRFPRYNNPE 133 (287)
T ss_dssp CSHHHHHHHHHHHHHHTTCEEC----SSCCCTTTCCCCEECSSCBCCCSHHHHTTCCCEEEEEETTTTEEEEEECCCCHH
T ss_pred ChHhHHHHHHHHHHhhcCceec----CCCCCcccCCccccccCCCCCChhhhccCCceEEEEEcCCCCCceeCCCCCCHH
Confidence 4456665544444444444332 2357999998754321 12367899999776666665553
Q ss_pred ------------hHHHHHHHHHhCCcccEEEE
Q psy7583 431 ------------AAKLLFQELMSMNIAPRLMV 450 (451)
Q Consensus 431 ------------~~klL~~EL~sm~I~~r~~~ 450 (451)
-+.++..=|.++||..|+..
T Consensus 134 ~ll~tr~G~C~e~a~~~~~~~Ra~g~~aR~v~ 165 (287)
T d2f4ma1 134 KLLETRCGRCGEWANCFTLCCRALGFEARYVW 165 (287)
T ss_dssp HHHHHCEESHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHhcCccHHHHHHHHHHHHHHcCCCeEEEe
Confidence 34677788999999998753
No 15
>d1neea2 g.59.1.1 (A:99-135) Zinc-binding domain of translation initiation factor 2 beta {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=34.64 E-value=13 Score=23.63 Aligned_cols=31 Identities=23% Similarity=0.589 Sum_probs=19.7
Q ss_pred eeccccceE---EeecccceeEeccCCCCCccce
Q psy7583 395 VCNFCGLIA---IANMRNNTFECKGCKNKTQISQ 425 (451)
Q Consensus 395 vC~~CG~~~---~~~~~~~~~~C~~C~~~~~~~~ 425 (451)
.|..|+++- ..+.+.....|..|+....|..
T Consensus 3 ~C~~C~spDT~l~ke~R~~~l~C~aCGa~r~V~~ 36 (37)
T d1neea2 3 ICHECNRPDTRIIREGRISLLKCEACGAKAPLKN 36 (37)
T ss_dssp HHTCCSSCSSCCEEETTTTEEECSTTSCCCCSCC
T ss_pred ECCCCCCCCCEEEEcCCEEEEEeccCCCCccccc
Confidence 488899873 2222333457999998766543
No 16
>d1e4va2 g.41.2.1 (A:122-156) Microbial and mitochondrial ADK, insert "zinc finger" domain {Escherichia coli [TaxId: 562]}
Probab=34.44 E-value=7.7 Score=24.33 Aligned_cols=26 Identities=12% Similarity=-0.123 Sum_probs=17.9
Q ss_pred eeeccccceEEe--ecccceeEeccCCC
Q psy7583 394 HVCNFCGLIAIA--NMRNNTFECKGCKN 419 (451)
Q Consensus 394 ~vC~~CG~~~~~--~~~~~~~~C~~C~~ 419 (451)
++|..||.+-+. ++......|-.|+.
T Consensus 3 r~c~~cG~~Yh~~~~PPk~~g~CD~cg~ 30 (35)
T d1e4va2 3 RVHAPSGRVYHVKFNPPKVEGKDDVTGE 30 (35)
T ss_dssp EEETTTTEEEETTTBCCSSTTBCTTTCC
T ss_pred cCCcCcCChhhhccCccccCCcccCCCC
Confidence 689999988653 33344456888874
No 17
>d2dsxa1 g.41.5.1 (A:1-52) Rubredoxin {Desulfovibrio gigas [TaxId: 879]}
Probab=34.19 E-value=8.1 Score=26.43 Aligned_cols=29 Identities=24% Similarity=0.534 Sum_probs=18.7
Q ss_pred eeeeeccccceEEee---cc------------cceeEeccCCCC
Q psy7583 392 RIHVCNFCGLIAIAN---MR------------NNTFECKGCKNK 420 (451)
Q Consensus 392 ~~~vC~~CG~~~~~~---~~------------~~~~~C~~C~~~ 420 (451)
..|+|..||-+-... .. -..|.|+.|+..
T Consensus 2 ~~y~C~~CgyiYdp~~Gd~~~gi~pGT~F~~LP~~w~CP~C~a~ 45 (52)
T d2dsxa1 2 DIYVCTVCGYEYDPAKGDPDSGIKPGTKFEDLPDDWACPVCGAS 45 (52)
T ss_dssp CCEEETTTCCEECTTTCBGGGTBCTTCCGGGSCTTCBCTTTCCB
T ss_pred CeEEeCCCCeEECcccCCcccCCCCCCCHHHCCCCCCCcCCCCc
Confidence 468999999663211 11 136889999854
No 18
>d1zina2 g.41.2.1 (A:126-160) Microbial and mitochondrial ADK, insert "zinc finger" domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=33.94 E-value=8.3 Score=24.17 Aligned_cols=26 Identities=19% Similarity=0.465 Sum_probs=17.5
Q ss_pred eeeccccceEEe--ecccceeEeccCCC
Q psy7583 394 HVCNFCGLIAIA--NMRNNTFECKGCKN 419 (451)
Q Consensus 394 ~vC~~CG~~~~~--~~~~~~~~C~~C~~ 419 (451)
++|..||.+-+. ++.....+|-.|+.
T Consensus 3 r~C~~CG~~Yh~~~~pPk~~g~CD~cG~ 30 (35)
T d1zina2 3 RICRNCGATYHLIFHPPAKPGVCDKCGG 30 (35)
T ss_dssp EEETTTCCEEETTTBCCSSTTBCTTTCC
T ss_pred cCCcCcCchhccccCCCCCCCcCCCCCC
Confidence 689999997653 23334456888874
No 19
>d1d0qa_ g.41.3.2 (A:) Zinc-binding domain of DNA primase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=31.50 E-value=41 Score=25.25 Aligned_cols=45 Identities=24% Similarity=0.383 Sum_probs=30.9
Q ss_pred eeeccccce---EEeecccceeEeccCCCCCcc-------ceecCchhHHHHHHH
Q psy7583 394 HVCNFCGLI---AIANMRNNTFECKGCKNKTQI-------SQVRLPYAAKLLFQE 438 (451)
Q Consensus 394 ~vC~~CG~~---~~~~~~~~~~~C~~C~~~~~~-------~~v~iPy~~klL~~E 438 (451)
..|+.|+.- ++.+..++.|.|-.|+.+.++ ..+..++|++.|.++
T Consensus 37 ~~CPfh~d~~~S~~v~~~~~~~~Cf~Cg~~Gd~i~fv~~~~~~sf~eAv~~La~~ 91 (102)
T d1d0qa_ 37 GLCPFHGEKTPSFSVSPEKQIFHCFGCGAGGNAFTFLMDIEGIPFVEAAKRLAAK 91 (102)
T ss_dssp ECCSSSCCSSCCEEEETTTTEEEETTTCCEECHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred EeccccCCCCcceeEcCCchheeeehhcccccHHHHHHHHHCcCHHHHHHHHHHH
Confidence 458877643 234556789999999875444 345668888888665
No 20
>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.96 E-value=13 Score=26.28 Aligned_cols=29 Identities=21% Similarity=0.422 Sum_probs=21.8
Q ss_pred eeeeeeccccceEE-------eecccceeEeccCCC
Q psy7583 391 YRIHVCNFCGLIAI-------ANMRNNTFECKGCKN 419 (451)
Q Consensus 391 ~~~~vC~~CG~~~~-------~~~~~~~~~C~~C~~ 419 (451)
-..++|+.|+.--. .++..+.|.|..|+.
T Consensus 12 ~~~y~Cp~C~~~ys~Lda~~L~d~~~~~F~C~~C~~ 47 (62)
T d1vd4a_ 12 RASFKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHT 47 (62)
T ss_dssp SSEEECSSSCCEEEHHHHHHHEETTTTEEBCSSSCC
T ss_pred CCceECCCCCCCcchhhHHHhcCcCCCeEEecCCCC
Confidence 34689999997643 235678999999985
No 21
>d1akya2 g.41.2.1 (A:131-168) Microbial and mitochondrial ADK, insert "zinc finger" domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=30.43 E-value=10 Score=24.17 Aligned_cols=26 Identities=8% Similarity=-0.088 Sum_probs=17.7
Q ss_pred eeeccccceEEe--ecccceeEeccCCC
Q psy7583 394 HVCNFCGLIAIA--NMRNNTFECKGCKN 419 (451)
Q Consensus 394 ~vC~~CG~~~~~--~~~~~~~~C~~C~~ 419 (451)
++|..||.+-+. ++......|-.|+.
T Consensus 3 r~C~~cG~~Yh~~~~ppk~~g~CD~cg~ 30 (38)
T d1akya2 3 LIHPASGRSYHKIFNPPKEDMKDDVTGE 30 (38)
T ss_dssp EECTTTCCEEETTTBCCSSTTBCTTTCC
T ss_pred cCCcCccchhhhhccCcCcCCccCCCCC
Confidence 689999998653 33334446888864
No 22
>d1k3xa3 g.39.1.8 (A:223-262) Endonuclease VIII {Escherichia coli [TaxId: 562]}
Probab=30.18 E-value=12 Score=23.92 Aligned_cols=24 Identities=29% Similarity=0.707 Sum_probs=16.4
Q ss_pred eeccccceEEee--cccceeEeccCC
Q psy7583 395 VCNFCGLIAIAN--MRNNTFECKGCK 418 (451)
Q Consensus 395 vC~~CG~~~~~~--~~~~~~~C~~C~ 418 (451)
-|..||...... ....+|.|+.|.
T Consensus 14 pC~~C~~~I~~~~~~gR~t~~Cp~CQ 39 (40)
T d1k3xa3 14 PCERCGSIIEKTTLSSRPFYWCPGCQ 39 (40)
T ss_dssp BCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred ccCcCCCEEEEEEECCCCCEEChhhC
Confidence 588999775432 223578899996
No 23
>d1r2za3 g.39.1.8 (A:229-274) DNA repair protein MutM (Fpg) {Bacillus stearothermophilus [TaxId: 1422]}
Probab=30.08 E-value=12 Score=24.60 Aligned_cols=24 Identities=25% Similarity=0.552 Sum_probs=16.8
Q ss_pred eeccccceEEee--cccceeEeccCC
Q psy7583 395 VCNFCGLIAIAN--MRNNTFECKGCK 418 (451)
Q Consensus 395 vC~~CG~~~~~~--~~~~~~~C~~C~ 418 (451)
.|..||...... ....+|.|+.|.
T Consensus 20 ~C~~C~~~I~~~~~~gR~t~~Cp~CQ 45 (46)
T d1r2za3 20 PCKRCGTPIEKTVVAGRGTHYCPRCQ 45 (46)
T ss_dssp BCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred ccCCCCCeEEEEEECCCcCEEChhhC
Confidence 689999875432 223578899996
No 24
>d1ee8a3 g.39.1.8 (A:211-266) DNA repair protein MutM (Fpg) {Thermus thermophilus [TaxId: 274]}
Probab=29.75 E-value=14 Score=25.28 Aligned_cols=26 Identities=23% Similarity=0.498 Sum_probs=18.2
Q ss_pred eeccccceEEee--cccceeEeccCCCC
Q psy7583 395 VCNFCGLIAIAN--MRNNTFECKGCKNK 420 (451)
Q Consensus 395 vC~~CG~~~~~~--~~~~~~~C~~C~~~ 420 (451)
.|..||...... ....+|.|+.|.+.
T Consensus 27 ~C~~C~~~I~~~~~~~R~t~~Cp~CQ~~ 54 (56)
T d1ee8a3 27 PCPACGRPVERRVVAGRGTHFCPTCQGE 54 (56)
T ss_dssp BCTTTCCBCEEEESSSCEEEECTTTTTC
T ss_pred ccccCCceEEEEEECCCcCEECcCccCC
Confidence 599999875532 12357889999853
No 25
>d2gmga1 a.4.5.82 (A:1-105) Hypothetical protein PF0610 {Pyrococcus furiosus [TaxId: 2261]}
Probab=29.73 E-value=6.7 Score=30.73 Aligned_cols=26 Identities=27% Similarity=0.649 Sum_probs=17.7
Q ss_pred eeeccccceEEeecccceeEeccCCCC
Q psy7583 394 HVCNFCGLIAIANMRNNTFECKGCKNK 420 (451)
Q Consensus 394 ~vC~~CG~~~~~~~~~~~~~C~~C~~~ 420 (451)
..|.+||.. +.+.-+..-.|+.|++.
T Consensus 68 p~CrkCGfv-Fr~~~kkPSRCP~CKSE 93 (105)
T d2gmga1 68 AQCRKCGFV-FKAEINIPSRCPKCKSE 93 (105)
T ss_dssp CBBTTTCCB-CCCCSSCCSSCSSSCCC
T ss_pred hhhhhcCCe-ecccCCCCCCCCCCCCc
Confidence 479999984 32333445579999863
No 26
>d1pd0a5 g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=29.65 E-value=9.3 Score=28.39 Aligned_cols=29 Identities=17% Similarity=0.346 Sum_probs=20.6
Q ss_pred eeeeeccccceEEe----ecccceeEeccCCCC
Q psy7583 392 RIHVCNFCGLIAIA----NMRNNTFECKGCKNK 420 (451)
Q Consensus 392 ~~~vC~~CG~~~~~----~~~~~~~~C~~C~~~ 420 (451)
.+..|..|+.++.. ....+.|+|..|+..
T Consensus 12 ~i~RC~~C~ayiNP~~~~~~~g~~w~C~~C~~~ 44 (85)
T d1pd0a5 12 LIVRCRRCRSYMNPFVTFIEQGRRWRCNFCRLA 44 (85)
T ss_dssp CCCBCSSSCCBCCTTCEEETTTTEEECTTTCCE
T ss_pred CCccccCCcCEECCceEEeCCCCEEECCCCCcc
Confidence 34569999987632 234568999999854
No 27
>d1s3ga2 g.41.2.1 (A:126-160) Microbial and mitochondrial ADK, insert "zinc finger" domain {Bacillus globisporus [TaxId: 1459]}
Probab=28.91 E-value=11 Score=23.51 Aligned_cols=26 Identities=19% Similarity=0.353 Sum_probs=17.3
Q ss_pred eeeccccceEEe--ecccceeEeccCCC
Q psy7583 394 HVCNFCGLIAIA--NMRNNTFECKGCKN 419 (451)
Q Consensus 394 ~vC~~CG~~~~~--~~~~~~~~C~~C~~ 419 (451)
++|..||..-+. ++......|-.|+.
T Consensus 3 ~~C~~CG~~Yh~~~~pPk~~g~CD~cg~ 30 (35)
T d1s3ga2 3 RICKVCGTSYHLLFNPPQVEGKCDKDGG 30 (35)
T ss_dssp EEETTTCCEEETTTBCCSBTTBCTTTCC
T ss_pred cCCcCcCchhccccCCCCCCCccCCCCC
Confidence 689999988653 23333446888874
No 28
>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.83 E-value=8 Score=23.99 Aligned_cols=12 Identities=33% Similarity=0.669 Sum_probs=9.4
Q ss_pred eeeeeccccceE
Q psy7583 392 RIHVCNFCGLIA 403 (451)
Q Consensus 392 ~~~vC~~CG~~~ 403 (451)
.++||++||...
T Consensus 3 ~afvcskcgktf 14 (37)
T d1x6ha1 3 AAFVCSKCGKTF 14 (37)
T ss_dssp CCEECSSSCCEE
T ss_pred ceeeecccccch
Confidence 368999999754
No 29
>d1k81a_ g.59.1.1 (A:) Zinc-binding domain of translation initiation factor 2 beta {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=27.81 E-value=11 Score=23.87 Aligned_cols=30 Identities=20% Similarity=0.489 Sum_probs=17.9
Q ss_pred eeccccceEEee-cccc--eeEeccCCCCCccc
Q psy7583 395 VCNFCGLIAIAN-MRNN--TFECKGCKNKTQIS 424 (451)
Q Consensus 395 vC~~CG~~~~~~-~~~~--~~~C~~C~~~~~~~ 424 (451)
.|..||++-..- .+.. .-.|..|+....|.
T Consensus 2 ~C~~C~spDT~l~ke~R~~~l~C~aCGa~r~V~ 34 (36)
T d1k81a_ 2 ICRECGKPDTKIIKEGRVHLLKCMACGAIRPIR 34 (36)
T ss_dssp CCSSSCSCEEEEEEETTEEEEEEETTTEEEEEC
T ss_pred CCCCCCCCCCEEEEcCCEEEEEeccCCCCCccc
Confidence 589999884321 1222 23699998655443
No 30
>d1tdza3 g.39.1.8 (A:225-271) DNA repair protein MutM (Fpg) {Lactococcus lactis [TaxId: 1358]}
Probab=26.82 E-value=16 Score=24.10 Aligned_cols=25 Identities=24% Similarity=0.462 Sum_probs=17.3
Q ss_pred eeccccceEEee--cccceeEeccCCC
Q psy7583 395 VCNFCGLIAIAN--MRNNTFECKGCKN 419 (451)
Q Consensus 395 vC~~CG~~~~~~--~~~~~~~C~~C~~ 419 (451)
.|..||...... ....+|.|+.|..
T Consensus 20 ~C~~C~~~I~~~~~~gR~t~~Cp~CQk 46 (47)
T d1tdza3 20 KCSRCGAEIQKIKVAGRGTHFCPVCQQ 46 (47)
T ss_dssp BCTTTCCBCEEEEETTEEEEECTTTSC
T ss_pred CcCCCCcEEEEEEECCcccEECccccC
Confidence 699999865432 2235788999974
No 31
>d1iroa_ g.41.5.1 (A:) Rubredoxin {Clostridium pasteurianum [TaxId: 1501]}
Probab=25.84 E-value=14 Score=25.23 Aligned_cols=28 Identities=21% Similarity=0.477 Sum_probs=18.1
Q ss_pred eeeeccccceEEee---cc------------cceeEeccCCCC
Q psy7583 393 IHVCNFCGLIAIAN---MR------------NNTFECKGCKNK 420 (451)
Q Consensus 393 ~~vC~~CG~~~~~~---~~------------~~~~~C~~C~~~ 420 (451)
.|+|..||-+--.. .. -..|+|+.|+..
T Consensus 3 ky~C~~CgyiYd~~~Gd~~~gi~pGT~F~~LP~dw~CP~C~a~ 45 (53)
T d1iroa_ 3 KYTCTVCGYIYNPEDGDPDNGVNPGTDFKDIPDDWVCPLCGVG 45 (53)
T ss_dssp CEEETTTCCEECTTTCBGGGTBCTTCCGGGSCTTCBCTTTCCB
T ss_pred CeEcCCCCcEECcccCCcccCCCCCCCHHHCCCCCCCcCCCCc
Confidence 48999999763211 00 135789999854
No 32
>d1l5ia_ d.89.1.4 (A:) DNA-binding domain of REP protein {Geminivirus (Tomato yellow leaf curl virus - sardinia) [TaxId: 123735]}
Probab=25.39 E-value=10 Score=30.27 Aligned_cols=27 Identities=15% Similarity=0.294 Sum_probs=22.0
Q ss_pred ccCCccceEeccCCCccceeccccccc
Q psy7583 9 HVRMDTLAHVLYYPHKPLVTTRSMEYL 35 (451)
Q Consensus 9 ~~R~D~~~~~L~yPQ~Plv~T~~~~~~ 35 (451)
+.|.-++-|.|+|||.||-.-.+.+.+
T Consensus 3 rFri~aKn~FLTYp~C~l~ke~~l~~l 29 (118)
T d1l5ia_ 3 RFSIKAKNYFLTYPKCDLTKENALSQI 29 (118)
T ss_dssp CCCCEEEEEEEEETTCCCCHHHHHHHH
T ss_pred ceEEeeeeEEEECCCCCCCHHHHHHHH
Confidence 467788999999999999877766654
No 33
>d1dx8a_ g.41.5.1 (A:) Rubredoxin {Guillardia theta [TaxId: 55529]}
Probab=24.79 E-value=15 Score=26.61 Aligned_cols=28 Identities=25% Similarity=0.634 Sum_probs=18.2
Q ss_pred eeeeccccceEEee---cc------------cceeEeccCCCC
Q psy7583 393 IHVCNFCGLIAIAN---MR------------NNTFECKGCKNK 420 (451)
Q Consensus 393 ~~vC~~CG~~~~~~---~~------------~~~~~C~~C~~~ 420 (451)
.|+|..||-+-... .. -..|.|+.|+..
T Consensus 7 ky~C~~CgyiYDp~~GD~~~gI~pGT~F~dLP~dW~CP~Cga~ 49 (70)
T d1dx8a_ 7 KYECEACGYIYEPEKGDKFAGIPPGTPFVDLSDSFMCPACRSP 49 (70)
T ss_dssp CEEETTTCCEECTTTCCTTTTCCSSCCGGGSCTTCBCTTTCCB
T ss_pred eEEcCCCCeEECcccCCcccCCCCCCChHHCCCCCCCcCCCCc
Confidence 47999999763211 11 136889999864
No 34
>d6rxna_ g.41.5.1 (A:) Rubredoxin {Desulfovibrio desulfuricans, strain 27774 [TaxId: 876]}
Probab=24.56 E-value=13 Score=24.65 Aligned_cols=28 Identities=25% Similarity=0.447 Sum_probs=18.3
Q ss_pred eeeeccccceEEeec--------ccceeEeccCCCC
Q psy7583 393 IHVCNFCGLIAIANM--------RNNTFECKGCKNK 420 (451)
Q Consensus 393 ~~vC~~CG~~~~~~~--------~~~~~~C~~C~~~ 420 (451)
.|+|..||-+-.... --..|+|+.|+..
T Consensus 3 ~y~C~~CgyiYd~~~Gdgt~Fe~LP~dw~CP~C~a~ 38 (45)
T d6rxna_ 3 KYVCNVCGYEYDPAEHDNVPFDQLPDDWCCPVCGVS 38 (45)
T ss_dssp CEEETTTCCEECGGGGTTCCGGGSCTTCBCTTTCCB
T ss_pred CeEeCCCCeEECcccCCCCCHHHCCCCCCCcCCCCc
Confidence 489999996642211 0136789999864
No 35
>d1k82a3 g.39.1.8 (A:225-268) DNA repair protein MutM (Fpg) {Escherichia coli [TaxId: 562]}
Probab=23.38 E-value=19 Score=23.37 Aligned_cols=24 Identities=33% Similarity=0.879 Sum_probs=16.5
Q ss_pred eeccccceEEee--cccceeEeccCC
Q psy7583 395 VCNFCGLIAIAN--MRNNTFECKGCK 418 (451)
Q Consensus 395 vC~~CG~~~~~~--~~~~~~~C~~C~ 418 (451)
.|..||...... ....+|.|+.|.
T Consensus 18 ~C~~C~~~I~~~~~~~R~t~~Cp~CQ 43 (44)
T d1k82a3 18 PCRVCGTPIVATKHAQRATFYCRQCQ 43 (44)
T ss_dssp BCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred CcCCCCCEEEEEEECCcccEEChhhc
Confidence 689999875432 224578899995
No 36
>d1dl6a_ g.41.3.1 (A:) Transcription initiation factor TFIIB, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.96 E-value=20 Score=24.80 Aligned_cols=31 Identities=16% Similarity=0.270 Sum_probs=20.4
Q ss_pred CceeeeeeccccceE-EeecccceeEeccCCC
Q psy7583 389 DPYRIHVCNFCGLIA-IANMRNNTFECKGCKN 419 (451)
Q Consensus 389 D~~~~~vC~~CG~~~-~~~~~~~~~~C~~C~~ 419 (451)
|...-..|+.||+.. ..+...+..+|..|+-
T Consensus 7 ~~~~~~~Cp~Cgs~~ii~D~~~Ge~vC~~CG~ 38 (58)
T d1dl6a_ 7 DALPRVTCPNHPDAILVEDYRAGDMICPECGL 38 (58)
T ss_dssp CCCSCCSBTTBSSSCCEECSSSCCEECTTTCC
T ss_pred ccccccCCCCCCCCCEEEECCCCcEecccCCC
Confidence 333445789998774 3445567778998873
No 37
>d1s24a_ g.41.5.1 (A:) Two-iron rubredoxin {Pseudomonas oleovorans [TaxId: 301]}
Probab=21.95 E-value=26 Score=24.07 Aligned_cols=30 Identities=23% Similarity=0.520 Sum_probs=19.1
Q ss_pred eeeeeeccccceEEee---cc------------cceeEeccCCCC
Q psy7583 391 YRIHVCNFCGLIAIAN---MR------------NNTFECKGCKNK 420 (451)
Q Consensus 391 ~~~~vC~~CG~~~~~~---~~------------~~~~~C~~C~~~ 420 (451)
+.-|+|..||-+-... .. -..|.|+.|+..
T Consensus 2 ~kky~C~~CgyiYdp~~Gd~~~gi~pGT~F~~LP~dw~CP~C~a~ 46 (56)
T d1s24a_ 2 YLKWICITCGHIYDEALGDEAEGFTPGTRFEDIPDDWCCPDCGAT 46 (56)
T ss_dssp CCEEEETTTTEEEETTSCCTTTTCCSCCCGGGCCTTCCCSSSCCC
T ss_pred CccEECCCCCcEECcccCCcccCcCCCCChhhCCCCCCCcCCCCc
Confidence 3458999999663211 00 135789999864
No 38
>d1gh9a_ g.41.6.1 (A:) Hypothetical protein MTH1184 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=21.77 E-value=48 Score=23.16 Aligned_cols=49 Identities=22% Similarity=0.356 Sum_probs=29.2
Q ss_pred eeeeeeccccceEEeecccceeEeccCCCCCcc------ceecCchhHHHHHHHHHh
Q psy7583 391 YRIHVCNFCGLIAIANMRNNTFECKGCKNKTQI------SQVRLPYAAKLLFQELMS 441 (451)
Q Consensus 391 ~~~~vC~~CG~~~~~~~~~~~~~C~~C~~~~~~------~~v~iPy~~klL~~EL~s 441 (451)
|.++.| .||..++......+..|. |+..-++ ..++-..-.-++.||||.
T Consensus 2 Y~IfRC-DCGRvLYskEg~kTrKCv-CGkT~nVK~RRIfk~a~~~eeAse~Vq~mQe 56 (71)
T d1gh9a_ 2 YIIFRC-DCGRALYSREGAKTRKCV-CGRTVNVKDRRIFGRADDFEEASELVRKLQE 56 (71)
T ss_dssp EEEEEE-TTSCCEEEETTCSEEEET-TTEEEECCSSSCBSCCSSHHHHHHHHHHHSS
T ss_pred eEEEEc-cCcceeeeccccceeeee-ccceeehhhhhHHhhhccHHHHHHHHHHHHH
Confidence 345666 699988764334455564 6543222 334446667788888874
Done!