Your job contains 1 sequence.
>psy7583
MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED
SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR
SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI
GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR
IPQIGDKFASRHGQKGTCGIQYRQEVSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLR
GNEVMFNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGG
LRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNK
TQISQVRLPYAAKLLFQELMSMNIAPRLMVV
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy7583
(451 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0262955 - symbol:RpII140 "RNA polymerase II 140kD ... 948 5.0e-190 2
UNIPROTKB|A5PJW8 - symbol:POLR2B "DNA-directed RNA polyme... 858 1.1e-172 2
UNIPROTKB|E2RNN5 - symbol:POLR2B "DNA-directed RNA polyme... 858 1.1e-172 2
UNIPROTKB|I3LGP4 - symbol:POLR2B "DNA-directed RNA polyme... 858 1.1e-172 2
UNIPROTKB|F1NCB0 - symbol:POLR2B "DNA-directed RNA polyme... 855 2.3e-172 2
UNIPROTKB|F1P4F2 - symbol:POLR2B "DNA-directed RNA polyme... 855 2.3e-172 2
UNIPROTKB|C9J2Y9 - symbol:POLR2B "DNA-directed RNA polyme... 852 4.7e-172 2
UNIPROTKB|C9J4M6 - symbol:POLR2B "DNA-directed RNA polyme... 852 4.7e-172 2
UNIPROTKB|P30876 - symbol:POLR2B "DNA-directed RNA polyme... 852 4.7e-172 2
RGD|1309477 - symbol:Polr2b "polymerase (RNA) II (DNA dir... 852 4.7e-172 2
MGI|MGI:2388280 - symbol:Polr2b "polymerase (RNA) II (DNA... 848 1.3e-171 2
WB|WBGene00016140 - symbol:rpb-2 species:6239 "Caenorhabd... 836 1.3e-157 2
DICTYBASE|DDB_G0288257 - symbol:rpb2 "RNA polymerase II c... 758 1.7e-146 2
ZFIN|ZDB-GENE-041008-1 - symbol:polr2b "polymerase (RNA) ... 845 6.1e-144 2
TAIR|locus:2119013 - symbol:NRPB2 species:3702 "Arabidops... 715 2.2e-134 2
CGD|CAL0004145 - symbol:orf19.3349 species:5476 "Candida ... 709 1.2e-131 2
UNIPROTKB|Q5A8Y5 - symbol:RPB140 "DNA-directed RNA polyme... 709 1.2e-131 2
POMBASE|SPAC23G3.01 - symbol:rpb2 "RNA polymerase II comp... 700 1.7e-131 2
SGD|S000005677 - symbol:RPB2 "RNA polymerase II second la... 688 7.3e-131 2
ASPGD|ASPL0000039770 - symbol:AN9120 species:162425 "Emer... 689 9.0e-127 2
GENEDB_PFALCIPARUM|PFB0715w - symbol:PFB0715w "DNA-direct... 626 8.4e-116 3
UNIPROTKB|O96236 - symbol:PFB0715w "DNA-directed RNA poly... 626 8.4e-116 3
FB|FBgn0004463 - symbol:RpIII128 "RNA polymerase III 128k... 427 2.3e-68 2
GENEDB_PFALCIPARUM|PFL0330c - symbol:PFL0330c "DNA-direct... 419 3.4e-68 3
UNIPROTKB|Q8I5X9 - symbol:PFL0330c "DNA-directed RNA poly... 419 3.4e-68 3
CGD|CAL0002357 - symbol:orf19.5847 species:5476 "Candida ... 457 5.3e-68 3
UNIPROTKB|I3LGN1 - symbol:LOC100737037 "DNA-directed RNA ... 431 1.2e-67 2
TAIR|locus:2153323 - symbol:NRPC2 "nuclear RNA polymerase... 446 1.4e-66 3
POMBASE|SPAC4G9.08c - symbol:rpc2 "DNA-directed RNA polym... 448 1.4e-66 2
UNIPROTKB|E1BRJ4 - symbol:POLR3B "DNA-directed RNA polyme... 430 2.6e-65 2
ZFIN|ZDB-GENE-030131-2887 - symbol:polr3b "polymerase (RN... 438 3.1e-65 2
UNIPROTKB|E1BPX6 - symbol:POLR3B "Uncharacterized protein... 431 3.3e-65 2
UNIPROTKB|E2RHZ2 - symbol:POLR3B "DNA-directed RNA polyme... 431 3.3e-65 2
UNIPROTKB|Q9NW08 - symbol:POLR3B "DNA-directed RNA polyme... 431 3.3e-65 2
SGD|S000005733 - symbol:RET1 "Second-largest subunit of R... 448 5.2e-65 2
MGI|MGI:1917678 - symbol:Polr3b "polymerase (RNA) III (DN... 431 5.3e-65 2
RGD|1565311 - symbol:Polr3b "polymerase (RNA) III (DNA di... 431 5.3e-65 2
DICTYBASE|DDB_G0288449 - symbol:rpc2 "RNA polymerase III,... 416 1.9e-62 2
TAIR|locus:2095233 - symbol:NRPD2A "nuclear RNA polymeras... 368 8.0e-57 2
WB|WBGene00017300 - symbol:rpc-2 species:6239 "Caenorhabd... 428 8.4e-56 2
ASPGD|ASPL0000054387 - symbol:AN0321 species:162425 "Emer... 558 7.7e-53 1
TAIR|locus:2019272 - symbol:NRPA2 "nuclear RNA polymerase... 312 1.4e-46 4
DICTYBASE|DDB_G0293560 - symbol:rpa2 "RNA polymerase I, s... 357 1.5e-46 2
FB|FBgn0003278 - symbol:RpI135 "RNA polymerase I 135kD su... 335 1.3e-42 2
WB|WBGene00008781 - symbol:rpoa-2 species:6239 "Caenorhab... 300 1.2e-40 4
POMBASE|SPBP23A10.07 - symbol:rpa2 "DNA-directed RNA poly... 297 3.3e-40 3
UNIPROTKB|E2REX8 - symbol:POLR1B "DNA-directed RNA polyme... 318 4.7e-40 2
RGD|620822 - symbol:Polr1b "polymerase (RNA) I polypeptid... 318 1.6e-39 2
UNIPROTKB|O54888 - symbol:Polr1b "DNA-directed RNA polyme... 318 1.6e-39 2
UNIPROTKB|F5H643 - symbol:POLR1B "DNA-directed RNA polyme... 318 1.6e-39 2
UNIPROTKB|F8W898 - symbol:POLR1B "DNA-directed RNA polyme... 318 1.8e-39 2
UNIPROTKB|Q9H9Y6 - symbol:POLR1B "DNA-directed RNA polyme... 318 3.3e-39 2
UNIPROTKB|F5GZX4 - symbol:POLR1B "DNA-directed RNA polyme... 318 3.6e-39 2
CGD|CAL0002109 - symbol:RPA135 species:5476 "Candida albi... 290 4.8e-39 3
MGI|MGI:108014 - symbol:Polr1b "polymerase (RNA) I polype... 315 5.2e-39 2
UNIPROTKB|F1SUA2 - symbol:POLR1B "DNA-directed RNA polyme... 316 1.6e-38 2
UNIPROTKB|A6QLS0 - symbol:POLR1B "DNA-directed RNA polyme... 312 3.1e-38 2
SGD|S000006214 - symbol:RPA135 "RNA polymerase I second l... 296 3.8e-38 3
ASPGD|ASPL0000012082 - symbol:AN3933 species:162425 "Emer... 297 1.5e-37 2
GENEDB_PFALCIPARUM|PF11_0358 - symbol:PF11_0358 "DNA-dire... 277 3.0e-36 2
UNIPROTKB|Q8II17 - symbol:PF11_0358 "DNA-directed RNA pol... 277 3.0e-36 2
ZFIN|ZDB-GENE-040426-1598 - symbol:polr1b "polymerase (RN... 298 5.4e-36 2
UNIPROTKB|F1NLV9 - symbol:F1NLV9 "DNA-directed RNA polyme... 301 8.0e-36 2
TIGR_CMR|CHY_2318 - symbol:CHY_2318 "DNA-directed RNA pol... 197 1.8e-25 2
TIGR_CMR|DET_0603 - symbol:DET_0603 "DNA-directed RNA pol... 191 2.8e-25 2
TIGR_CMR|BA_0102 - symbol:BA_0102 "DNA-directed RNA polym... 205 7.6e-25 2
TIGR_CMR|SPO_3508 - symbol:SPO_3508 "DNA-directed RNA pol... 219 4.4e-24 3
UNIPROTKB|P0A680 - symbol:rpoB "DNA-directed RNA polymera... 186 2.4e-23 2
TIGR_CMR|CBU_0231 - symbol:CBU_0231 "DNA-directed RNA pol... 202 7.5e-23 3
TIGR_CMR|CJE_0528 - symbol:CJE_0528 "DNA-directed RNA pol... 220 1.5e-22 3
UNIPROTKB|P60281 - symbol:rpoB "DNA-directed RNA polymera... 184 3.4e-22 2
TIGR_CMR|SO_0224 - symbol:SO_0224 "DNA-directed RNA polym... 213 3.7e-22 2
TIGR_CMR|GSU_2863 - symbol:GSU_2863 "DNA-directed RNA pol... 193 4.9e-22 3
UNIPROTKB|Q9KV30 - symbol:rpoB "DNA-directed RNA polymera... 192 1.2e-21 3
TIGR_CMR|VC_0328 - symbol:VC_0328 "DNA-directed RNA polym... 192 1.2e-21 3
UNIPROTKB|P0A8V2 - symbol:rpoB "RNA polymerase, beta subu... 191 1.2e-21 3
UNIPROTKB|I3L6M3 - symbol:LOC100737037 "Uncharacterized p... 254 2.8e-21 1
TIGR_CMR|ECH_0952 - symbol:ECH_0952 "DNA-directed RNA pol... 193 2.2e-20 3
TIGR_CMR|CPS_4769 - symbol:CPS_4769 "DNA-directed RNA pol... 190 4.4e-20 3
TIGR_CMR|APH_1024 - symbol:APH_1024 "DNA-directed RNA pol... 191 4.8e-20 3
UNIPROTKB|F1SPQ0 - symbol:LOC100737037 "DNA-directed RNA ... 254 1.6e-18 1
TIGR_CMR|NSE_0678 - symbol:NSE_0678 "DNA-directed RNA pol... 187 2.1e-18 2
UNIPROTKB|P0C501 - symbol:rpoB "DNA-directed RNA polymera... 178 1.3e-16 2
UNIPROTKB|P0C502 - symbol:rpoB "DNA-directed RNA polymera... 178 1.3e-16 2
UNIPROTKB|P0C503 - symbol:rpoB "DNA-directed RNA polymera... 178 1.3e-16 2
UNIPROTKB|Q6ENI4 - symbol:rpoB "DNA-directed RNA polymera... 178 1.3e-16 2
UNIPROTKB|H7C0D9 - symbol:POLR1B "DNA-directed RNA polyme... 166 1.0e-09 1
UNIPROTKB|P21421 - symbol:rpoB "DNA-directed RNA polymera... 137 9.6e-09 2
UNIPROTKB|F1NRJ5 - symbol:F1NRJ5 "Uncharacterized protein... 156 5.9e-08 2
>FB|FBgn0262955 [details] [associations]
symbol:RpII140 "RNA polymerase II 140kD subunit" species:7227
"Drosophila melanogaster" [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=ISS;NAS;IDA] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=ISS;NAS] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS;NAS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0032549 "ribonucleoside
binding" evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 PANTHER:PTHR20856 EMBL:AE014297 GO:GO:0046872
GO:GO:0003677 GO:GO:0006366 GO:GO:0003899 GO:GO:0005665
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03010 OMA:IMIVFRA GeneTree:ENSGT00690000102234 EMBL:X05709
EMBL:BT003265 EMBL:M62972 PIR:A27826 RefSeq:NP_476706.1
UniGene:Dm.6926 ProteinModelPortal:P08266 DIP:DIP-17498N
MINT:MINT-1578011 STRING:P08266 PaxDb:P08266
EnsemblMetazoa:FBtr0082892 GeneID:41721 KEGG:dme:Dmel_CG3180
CTD:41721 FlyBase:FBgn0262955 InParanoid:P08266 OrthoDB:EOG4G1JX8
PhylomeDB:P08266 ChiTaRS:RpII140 GenomeRNAi:41721 NextBio:825231
Bgee:P08266 GermOnline:CG3180 Uniprot:P08266
Length = 1176
Score = 948 (338.8 bits), Expect = 5.0e-190, Sum P(2) = 5.0e-190
Identities = 177/186 (95%), Positives = 183/186 (98%)
Query: 265 EVSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
++ SNKGEIGDATPFNDAVNVQKIST LQEYGY LRGNEVM+NGHTGRKINAQVFLGPTY
Sbjct: 990 KLGSNKGEIGDATPFNDAVNVQKISTFLQEYGYHLRGNEVMYNGHTGRKINAQVFLGPTY 1049
Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL
Sbjct: 1050 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 1109
Query: 385 FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
FEVSDPYR+H+CNFCGLIAIAN+RNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI
Sbjct: 1110 FEVSDPYRVHICNFCGLIAIANLRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 1169
Query: 445 APRLMV 450
APRLMV
Sbjct: 1170 APRLMV 1175
Score = 916 (327.5 bits), Expect = 5.0e-190, Sum P(2) = 5.0e-190
Identities = 174/191 (91%), Positives = 184/191 (96%)
Query: 75 RSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFRSYKDAESKR 134
RSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERG+FRSVF+RSYKD+E+KR
Sbjct: 764 RSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSENKR 823
Query: 135 IGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENEDELE 194
+GDQEE FEKP+R TCQGMRNA YDKLDDDGIIAPG+RVSGDDVVIGKTITLPEN+DEL+
Sbjct: 824 VGDQEENFEKPHRGTCQGMRNAHYDKLDDDGIIAPGIRVSGDDVVIGKTITLPENDDELD 883
Query: 195 GTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQ 254
TKRFSKRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVRIPQIGDKFASRHGQ
Sbjct: 884 SNTKRFSKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQ 943
Query: 255 KGTCGIQYRQE 265
KGTCGIQYRQE
Sbjct: 944 KGTCGIQYRQE 954
Score = 392 (143.0 bits), Expect = 1.2e-134, Sum P(2) = 1.2e-134
Identities = 75/84 (89%), Positives = 80/84 (95%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
MGVYITNFHVRMDTLAHVLYYP KPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED
Sbjct: 735 MGVYITNFHVRMDTLAHVLYYPMKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 794
Query: 61 SVILNASAVERGYFRSMEYLRFRE 84
SVILNASAVERG+FRS+ Y +++
Sbjct: 795 SVILNASAVERGFFRSVFYRSYKD 818
>UNIPROTKB|A5PJW8 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase" species:9913
"Bos taurus" [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=IEA] [GO:0004672 "protein kinase
activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 GO:GO:0004672 GO:GO:0006366 GO:GO:0003899
GO:GO:0005665 eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03010 OMA:IMIVFRA
GeneTree:ENSGT00690000102234 HOGENOM:HOG000222962 CTD:5431
HOVERGEN:HBG017744 OrthoDB:EOG4JQ3WQ EMBL:DAAA02017743
EMBL:BC142267 IPI:IPI00701366 RefSeq:NP_001092552.1
UniGene:Bt.103151 STRING:A5PJW8 Ensembl:ENSBTAT00000025800
GeneID:538184 KEGG:bta:538184 InParanoid:A5PJW8 NextBio:20877300
Uniprot:A5PJW8
Length = 1174
Score = 858 (307.1 bits), Expect = 1.1e-172, Sum P(2) = 1.1e-172
Identities = 162/191 (84%), Positives = 179/191 (93%)
Query: 75 RSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFRSYKDAESKR 134
RSMEYLRFRELPAGINSIVAI YTGYNQEDSVI+N SAV+RG+FRSVF+RSYK+ ESK+
Sbjct: 762 RSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKK 821
Query: 135 IGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENEDELE 194
DQEE FEKP R+TCQGMR+AIYDKLDDDG+IAPG+RVSGDDV+IGKT+TLPENEDELE
Sbjct: 822 GFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELE 881
Query: 195 GTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQ 254
GT +R++KRD STFLR SETGIVDQVM+TLN +GYKFCKIRVRSVRIPQIGDKFASRHGQ
Sbjct: 882 GTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQ 941
Query: 255 KGTCGIQYRQE 265
KGTCGIQYRQE
Sbjct: 942 KGTCGIQYRQE 952
Score = 842 (301.5 bits), Expect = 1.1e-172, Sum P(2) = 1.1e-172
Identities = 152/187 (81%), Positives = 174/187 (93%)
Query: 265 EVSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
+VS+NKGEIGDATPFNDAVNVQKIS LL +YGY LRGNEV++NG TGRKI +Q+F+GPTY
Sbjct: 988 KVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTY 1047
Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
YQRLKHMVDDKIHSRARGP+QIL RQPMEGR+RDGGLRFGEMERDCQI+HGAAQFLRERL
Sbjct: 1048 YQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERL 1107
Query: 385 FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
FE SDPY++HVCN CG++AIAN R +T+EC+GC+NKTQIS VR+PYA KLLFQELMSM+I
Sbjct: 1108 FEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSI 1167
Query: 445 APRLMVV 451
APR+M V
Sbjct: 1168 APRMMSV 1174
Score = 372 (136.0 bits), Expect = 2.5e-121, Sum P(2) = 2.5e-121
Identities = 71/84 (84%), Positives = 77/84 (91%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
MGVYITNFHVRMDTLAHVLYYP KPLVTTRSMEYLRFRELPAGINSIVAI YTGYNQED
Sbjct: 733 MGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQED 792
Query: 61 SVILNASAVERGYFRSMEYLRFRE 84
SVI+N SAV+RG+FRS+ Y ++E
Sbjct: 793 SVIMNRSAVDRGFFRSVFYRSYKE 816
>UNIPROTKB|E2RNN5 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=IEA] [GO:0004672 "protein
kinase activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 GO:GO:0004672 GO:GO:0006366 GO:GO:0003899
GO:GO:0005665 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03010 OMA:IMIVFRA GeneTree:ENSGT00690000102234 CTD:5431
EMBL:AAEX03009093 RefSeq:XP_532382.2 ProteinModelPortal:E2RNN5
Ensembl:ENSCAFT00000003641 GeneID:475152 KEGG:cfa:475152
Uniprot:E2RNN5
Length = 1174
Score = 858 (307.1 bits), Expect = 1.1e-172, Sum P(2) = 1.1e-172
Identities = 162/191 (84%), Positives = 179/191 (93%)
Query: 75 RSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFRSYKDAESKR 134
RSMEYLRFRELPAGINSIVAI YTGYNQEDSVI+N SAV+RG+FRSVF+RSYK+ ESK+
Sbjct: 762 RSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKK 821
Query: 135 IGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENEDELE 194
DQEE FEKP R+TCQGMR+AIYDKLDDDG+IAPG+RVSGDDV+IGKT+TLPENEDELE
Sbjct: 822 GFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELE 881
Query: 195 GTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQ 254
GT +R++KRD STFLR SETGIVDQVM+TLN +GYKFCKIRVRSVRIPQIGDKFASRHGQ
Sbjct: 882 GTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQ 941
Query: 255 KGTCGIQYRQE 265
KGTCGIQYRQE
Sbjct: 942 KGTCGIQYRQE 952
Score = 842 (301.5 bits), Expect = 1.1e-172, Sum P(2) = 1.1e-172
Identities = 152/187 (81%), Positives = 174/187 (93%)
Query: 265 EVSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
+VS+NKGEIGDATPFNDAVNVQKIS LL +YGY LRGNEV++NG TGRKI +Q+F+GPTY
Sbjct: 988 KVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTY 1047
Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
YQRLKHMVDDKIHSRARGP+QIL RQPMEGR+RDGGLRFGEMERDCQI+HGAAQFLRERL
Sbjct: 1048 YQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERL 1107
Query: 385 FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
FE SDPY++HVCN CG++AIAN R +T+EC+GC+NKTQIS VR+PYA KLLFQELMSM+I
Sbjct: 1108 FEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSI 1167
Query: 445 APRLMVV 451
APR+M V
Sbjct: 1168 APRMMSV 1174
Score = 372 (136.0 bits), Expect = 2.5e-121, Sum P(2) = 2.5e-121
Identities = 71/84 (84%), Positives = 77/84 (91%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
MGVYITNFHVRMDTLAHVLYYP KPLVTTRSMEYLRFRELPAGINSIVAI YTGYNQED
Sbjct: 733 MGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQED 792
Query: 61 SVILNASAVERGYFRSMEYLRFRE 84
SVI+N SAV+RG+FRS+ Y ++E
Sbjct: 793 SVIMNRSAVDRGFFRSVFYRSYKE 816
>UNIPROTKB|I3LGP4 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase" species:9823
"Sus scrofa" [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=IEA] [GO:0004672 "protein kinase
activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 GO:GO:0004672 GO:GO:0006366 GO:GO:0003899
GO:GO:0005665 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03010 OMA:IMIVFRA GeneTree:ENSGT00690000102234 CTD:5431
EMBL:FP476021 EMBL:CU984592 RefSeq:XP_003129085.2 UniGene:Ssc.55326
Ensembl:ENSSSCT00000023257 GeneID:397001 KEGG:ssc:397001
Uniprot:I3LGP4
Length = 1167
Score = 858 (307.1 bits), Expect = 1.1e-172, Sum P(2) = 1.1e-172
Identities = 162/191 (84%), Positives = 179/191 (93%)
Query: 75 RSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFRSYKDAESKR 134
RSMEYLRFRELPAGINSIVAI YTGYNQEDSVI+N SAV+RG+FRSVF+RSYK+ ESK+
Sbjct: 755 RSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKK 814
Query: 135 IGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENEDELE 194
DQEE FEKP R+TCQGMR+AIYDKLDDDG+IAPG+RVSGDDV+IGKT+TLPENEDELE
Sbjct: 815 GFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELE 874
Query: 195 GTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQ 254
GT +R++KRD STFLR SETGIVDQVM+TLN +GYKFCKIRVRSVRIPQIGDKFASRHGQ
Sbjct: 875 GTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQ 934
Query: 255 KGTCGIQYRQE 265
KGTCGIQYRQE
Sbjct: 935 KGTCGIQYRQE 945
Score = 842 (301.5 bits), Expect = 1.1e-172, Sum P(2) = 1.1e-172
Identities = 152/187 (81%), Positives = 174/187 (93%)
Query: 265 EVSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
+VS+NKGEIGDATPFNDAVNVQKIS LL +YGY LRGNEV++NG TGRKI +Q+F+GPTY
Sbjct: 981 KVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTY 1040
Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
YQRLKHMVDDKIHSRARGP+QIL RQPMEGR+RDGGLRFGEMERDCQI+HGAAQFLRERL
Sbjct: 1041 YQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERL 1100
Query: 385 FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
FE SDPY++HVCN CG++AIAN R +T+EC+GC+NKTQIS VR+PYA KLLFQELMSM+I
Sbjct: 1101 FEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSI 1160
Query: 445 APRLMVV 451
APR+M V
Sbjct: 1161 APRMMSV 1167
Score = 372 (136.0 bits), Expect = 2.5e-121, Sum P(2) = 2.5e-121
Identities = 71/84 (84%), Positives = 77/84 (91%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
MGVYITNFHVRMDTLAHVLYYP KPLVTTRSMEYLRFRELPAGINSIVAI YTGYNQED
Sbjct: 726 MGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQED 785
Query: 61 SVILNASAVERGYFRSMEYLRFRE 84
SVI+N SAV+RG+FRS+ Y ++E
Sbjct: 786 SVIMNRSAVDRGFFRSVFYRSYKE 809
>UNIPROTKB|F1NCB0 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 GeneTree:ENSGT00690000102234
EMBL:AADN02009110 EMBL:AADN02009111 IPI:IPI00823005
Ensembl:ENSGALT00000037965 ArrayExpress:F1NCB0 Uniprot:F1NCB0
Length = 1174
Score = 855 (306.0 bits), Expect = 2.3e-172, Sum P(2) = 2.3e-172
Identities = 162/191 (84%), Positives = 178/191 (93%)
Query: 75 RSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFRSYKDAESKR 134
RSMEYLRFRELPAGINSIVAI YTGYNQEDSVI+N SAV+RG+FRSVF+RSYK+ ESK+
Sbjct: 762 RSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKK 821
Query: 135 IGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENEDELE 194
DQEE FEKP R+TCQGMR+AIYDKLDDDG+IAPG+RVSGDDV+IGKT+TLPENEDELE
Sbjct: 822 GYDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELE 881
Query: 195 GTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQ 254
T +RF+KRD STFLR SETGIVDQVM+TLN +GYKFCKIRVRSVRIPQIGDKFASRHGQ
Sbjct: 882 STNRRFTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQ 941
Query: 255 KGTCGIQYRQE 265
KGTCGIQYRQE
Sbjct: 942 KGTCGIQYRQE 952
Score = 842 (301.5 bits), Expect = 2.3e-172, Sum P(2) = 2.3e-172
Identities = 152/187 (81%), Positives = 174/187 (93%)
Query: 265 EVSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
+VS+NKGEIGDATPFNDAVNVQKIS LL +YGY LRGNEV++NG TGRKI +Q+F+GPTY
Sbjct: 988 KVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTY 1047
Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
YQRLKHMVDDKIHSRARGP+QIL RQPMEGR+RDGGLRFGEMERDCQI+HGAAQFLRERL
Sbjct: 1048 YQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERL 1107
Query: 385 FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
FE SDPY++HVCN CG++AIAN R +T+EC+GC+NKTQIS VR+PYA KLLFQELMSM+I
Sbjct: 1108 FEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSI 1167
Query: 445 APRLMVV 451
APR+M V
Sbjct: 1168 APRMMSV 1174
Score = 372 (136.0 bits), Expect = 2.5e-121, Sum P(2) = 2.5e-121
Identities = 71/84 (84%), Positives = 77/84 (91%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
MGVYITNFHVRMDTLAHVLYYP KPLVTTRSMEYLRFRELPAGINSIVAI YTGYNQED
Sbjct: 733 MGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQED 792
Query: 61 SVILNASAVERGYFRSMEYLRFRE 84
SVI+N SAV+RG+FRS+ Y ++E
Sbjct: 793 SVIMNRSAVDRGFFRSVFYRSYKE 816
>UNIPROTKB|F1P4F2 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0004672 "protein kinase activity"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 GO:GO:0004672 GO:GO:0006366 GO:GO:0003899
GO:GO:0005665 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
OMA:IMIVFRA GeneTree:ENSGT00690000102234 EMBL:AADN02009110
EMBL:AADN02009111 IPI:IPI00580164 Ensembl:ENSGALT00000018572
ArrayExpress:F1P4F2 Uniprot:F1P4F2
Length = 1176
Score = 855 (306.0 bits), Expect = 2.3e-172, Sum P(2) = 2.3e-172
Identities = 162/191 (84%), Positives = 178/191 (93%)
Query: 75 RSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFRSYKDAESKR 134
RSMEYLRFRELPAGINSIVAI YTGYNQEDSVI+N SAV+RG+FRSVF+RSYK+ ESK+
Sbjct: 764 RSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKK 823
Query: 135 IGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENEDELE 194
DQEE FEKP R+TCQGMR+AIYDKLDDDG+IAPG+RVSGDDV+IGKT+TLPENEDELE
Sbjct: 824 GYDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELE 883
Query: 195 GTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQ 254
T +RF+KRD STFLR SETGIVDQVM+TLN +GYKFCKIRVRSVRIPQIGDKFASRHGQ
Sbjct: 884 STNRRFTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQ 943
Query: 255 KGTCGIQYRQE 265
KGTCGIQYRQE
Sbjct: 944 KGTCGIQYRQE 954
Score = 842 (301.5 bits), Expect = 2.3e-172, Sum P(2) = 2.3e-172
Identities = 152/187 (81%), Positives = 174/187 (93%)
Query: 265 EVSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
+VS+NKGEIGDATPFNDAVNVQKIS LL +YGY LRGNEV++NG TGRKI +Q+F+GPTY
Sbjct: 990 KVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTY 1049
Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
YQRLKHMVDDKIHSRARGP+QIL RQPMEGR+RDGGLRFGEMERDCQI+HGAAQFLRERL
Sbjct: 1050 YQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERL 1109
Query: 385 FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
FE SDPY++HVCN CG++AIAN R +T+EC+GC+NKTQIS VR+PYA KLLFQELMSM+I
Sbjct: 1110 FEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSI 1169
Query: 445 APRLMVV 451
APR+M V
Sbjct: 1170 APRMMSV 1176
Score = 372 (136.0 bits), Expect = 2.6e-121, Sum P(2) = 2.6e-121
Identities = 71/84 (84%), Positives = 77/84 (91%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
MGVYITNFHVRMDTLAHVLYYP KPLVTTRSMEYLRFRELPAGINSIVAI YTGYNQED
Sbjct: 735 MGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQED 794
Query: 61 SVILNASAVERGYFRSMEYLRFRE 84
SVI+N SAV+RG+FRS+ Y ++E
Sbjct: 795 SVIMNRSAVDRGFFRSVFYRSYKE 818
>UNIPROTKB|C9J2Y9 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0005634 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
EMBL:AC069307 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HGNC:HGNC:9188 IPI:IPI00894141 ProteinModelPortal:C9J2Y9
STRING:C9J2Y9 Ensembl:ENST00000441246 ArrayExpress:C9J2Y9
Bgee:C9J2Y9 Uniprot:C9J2Y9
Length = 1167
Score = 852 (305.0 bits), Expect = 4.7e-172, Sum P(2) = 4.7e-172
Identities = 161/191 (84%), Positives = 178/191 (93%)
Query: 75 RSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFRSYKDAESKR 134
RSMEYLRFRELPAGINSIVAI YTGYNQEDSVI+N SAV+RG+FRSVF+RSYK+ ESK+
Sbjct: 755 RSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKK 814
Query: 135 IGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENEDELE 194
DQEE FEKP R+TCQGMR+AIYDKLDDDG+IAPG+RVSGDDV+IGKT+TLPENEDELE
Sbjct: 815 GFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELE 874
Query: 195 GTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQ 254
T +R++KRD STFLR SETGIVDQVM+TLN +GYKFCKIRVRSVRIPQIGDKFASRHGQ
Sbjct: 875 STNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQ 934
Query: 255 KGTCGIQYRQE 265
KGTCGIQYRQE
Sbjct: 935 KGTCGIQYRQE 945
Score = 842 (301.5 bits), Expect = 4.7e-172, Sum P(2) = 4.7e-172
Identities = 152/187 (81%), Positives = 174/187 (93%)
Query: 265 EVSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
+VS+NKGEIGDATPFNDAVNVQKIS LL +YGY LRGNEV++NG TGRKI +Q+F+GPTY
Sbjct: 981 KVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTY 1040
Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
YQRLKHMVDDKIHSRARGP+QIL RQPMEGR+RDGGLRFGEMERDCQI+HGAAQFLRERL
Sbjct: 1041 YQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERL 1100
Query: 385 FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
FE SDPY++HVCN CG++AIAN R +T+EC+GC+NKTQIS VR+PYA KLLFQELMSM+I
Sbjct: 1101 FEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSI 1160
Query: 445 APRLMVV 451
APR+M V
Sbjct: 1161 APRMMSV 1167
Score = 372 (136.0 bits), Expect = 2.5e-121, Sum P(2) = 2.5e-121
Identities = 71/84 (84%), Positives = 77/84 (91%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
MGVYITNFHVRMDTLAHVLYYP KPLVTTRSMEYLRFRELPAGINSIVAI YTGYNQED
Sbjct: 726 MGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQED 785
Query: 61 SVILNASAVERGYFRSMEYLRFRE 84
SVI+N SAV+RG+FRS+ Y ++E
Sbjct: 786 SVIMNRSAVDRGFFRSVFYRSYKE 809
>UNIPROTKB|C9J4M6 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0005634 GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 EMBL:AC069307 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 HGNC:HGNC:9188 IPI:IPI00873948 STRING:C9J4M6
Ensembl:ENST00000431623 UCSC:uc011caf.1 ArrayExpress:C9J4M6
Bgee:C9J4M6 Uniprot:C9J4M6
Length = 1099
Score = 852 (305.0 bits), Expect = 4.7e-172, Sum P(2) = 4.7e-172
Identities = 161/191 (84%), Positives = 178/191 (93%)
Query: 75 RSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFRSYKDAESKR 134
RSMEYLRFRELPAGINSIVAI YTGYNQEDSVI+N SAV+RG+FRSVF+RSYK+ ESK+
Sbjct: 687 RSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKK 746
Query: 135 IGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENEDELE 194
DQEE FEKP R+TCQGMR+AIYDKLDDDG+IAPG+RVSGDDV+IGKT+TLPENEDELE
Sbjct: 747 GFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELE 806
Query: 195 GTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQ 254
T +R++KRD STFLR SETGIVDQVM+TLN +GYKFCKIRVRSVRIPQIGDKFASRHGQ
Sbjct: 807 STNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQ 866
Query: 255 KGTCGIQYRQE 265
KGTCGIQYRQE
Sbjct: 867 KGTCGIQYRQE 877
Score = 842 (301.5 bits), Expect = 4.7e-172, Sum P(2) = 4.7e-172
Identities = 152/187 (81%), Positives = 174/187 (93%)
Query: 265 EVSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
+VS+NKGEIGDATPFNDAVNVQKIS LL +YGY LRGNEV++NG TGRKI +Q+F+GPTY
Sbjct: 913 KVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTY 972
Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
YQRLKHMVDDKIHSRARGP+QIL RQPMEGR+RDGGLRFGEMERDCQI+HGAAQFLRERL
Sbjct: 973 YQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERL 1032
Query: 385 FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
FE SDPY++HVCN CG++AIAN R +T+EC+GC+NKTQIS VR+PYA KLLFQELMSM+I
Sbjct: 1033 FEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSI 1092
Query: 445 APRLMVV 451
APR+M V
Sbjct: 1093 APRMMSV 1099
Score = 372 (136.0 bits), Expect = 2.5e-121, Sum P(2) = 2.5e-121
Identities = 71/84 (84%), Positives = 77/84 (91%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
MGVYITNFHVRMDTLAHVLYYP KPLVTTRSMEYLRFRELPAGINSIVAI YTGYNQED
Sbjct: 658 MGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQED 717
Query: 61 SVILNASAVERGYFRSMEYLRFRE 84
SVI+N SAV+RG+FRS+ Y ++E
Sbjct: 718 SVIMNRSAVDRGFFRSVFYRSYKE 741
>UNIPROTKB|P30876 [details] [associations]
symbol:POLR2B "DNA-directed RNA polymerase II subunit RPB2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0004672 "protein kinase activity" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IDA;TAS] [GO:0005665 "DNA-directed
RNA polymerase II, core complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=TAS] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=TAS] [GO:0006370
"7-methylguanosine mRNA capping" evidence=TAS] [GO:0008380 "RNA
splicing" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0050434
"positive regulation of viral transcription" evidence=TAS]
[GO:0006468 "protein phosphorylation" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_216 Reactome:REACT_71
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 Reactome:REACT_116125 GO:GO:0016032 GO:GO:0046872
GO:GO:0003677 Reactome:REACT_1675 GO:GO:0006468 EMBL:CH471057
GO:GO:0006368 GO:GO:0006367 GO:GO:0000398 Reactome:REACT_1788
GO:GO:0006370 GO:GO:0050434 GO:GO:0006283 Reactome:REACT_1892
GO:GO:0003899 GO:GO:0005665 eggNOG:COG0085 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 KO:K03010 OMA:IMIVFRA
HOGENOM:HOG000222962 EMBL:X63563 EMBL:AK289823 EMBL:BC023503
EMBL:AF055028 IPI:IPI00027808 PIR:S28976 RefSeq:NP_000929.1
UniGene:Hs.602757 ProteinModelPortal:P30876 DIP:DIP-32910N
IntAct:P30876 MINT:MINT-1216897 STRING:P30876 PhosphoSite:P30876
DMDM:401012 PaxDb:P30876 PeptideAtlas:P30876 PRIDE:P30876
Ensembl:ENST00000314595 Ensembl:ENST00000381227 GeneID:5431
KEGG:hsa:5431 UCSC:uc003hcl.1 CTD:5431 GeneCards:GC04P057760
HGNC:HGNC:9188 HPA:HPA037506 MIM:180661 neXtProt:NX_P30876
PharmGKB:PA33508 HOVERGEN:HBG017744 InParanoid:P30876
OrthoDB:EOG4JQ3WQ PhylomeDB:P30876 GenomeRNAi:5431 NextBio:21013
ArrayExpress:P30876 Bgee:P30876 CleanEx:HS_POLR2B
Genevestigator:P30876 GermOnline:ENSG00000047315 Uniprot:P30876
Length = 1174
Score = 852 (305.0 bits), Expect = 4.7e-172, Sum P(2) = 4.7e-172
Identities = 161/191 (84%), Positives = 178/191 (93%)
Query: 75 RSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFRSYKDAESKR 134
RSMEYLRFRELPAGINSIVAI YTGYNQEDSVI+N SAV+RG+FRSVF+RSYK+ ESK+
Sbjct: 762 RSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKK 821
Query: 135 IGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENEDELE 194
DQEE FEKP R+TCQGMR+AIYDKLDDDG+IAPG+RVSGDDV+IGKT+TLPENEDELE
Sbjct: 822 GFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELE 881
Query: 195 GTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQ 254
T +R++KRD STFLR SETGIVDQVM+TLN +GYKFCKIRVRSVRIPQIGDKFASRHGQ
Sbjct: 882 STNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQ 941
Query: 255 KGTCGIQYRQE 265
KGTCGIQYRQE
Sbjct: 942 KGTCGIQYRQE 952
Score = 842 (301.5 bits), Expect = 4.7e-172, Sum P(2) = 4.7e-172
Identities = 152/187 (81%), Positives = 174/187 (93%)
Query: 265 EVSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
+VS+NKGEIGDATPFNDAVNVQKIS LL +YGY LRGNEV++NG TGRKI +Q+F+GPTY
Sbjct: 988 KVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTY 1047
Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
YQRLKHMVDDKIHSRARGP+QIL RQPMEGR+RDGGLRFGEMERDCQI+HGAAQFLRERL
Sbjct: 1048 YQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERL 1107
Query: 385 FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
FE SDPY++HVCN CG++AIAN R +T+EC+GC+NKTQIS VR+PYA KLLFQELMSM+I
Sbjct: 1108 FEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSI 1167
Query: 445 APRLMVV 451
APR+M V
Sbjct: 1168 APRMMSV 1174
Score = 372 (136.0 bits), Expect = 2.5e-121, Sum P(2) = 2.5e-121
Identities = 71/84 (84%), Positives = 77/84 (91%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
MGVYITNFHVRMDTLAHVLYYP KPLVTTRSMEYLRFRELPAGINSIVAI YTGYNQED
Sbjct: 733 MGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQED 792
Query: 61 SVILNASAVERGYFRSMEYLRFRE 84
SVI+N SAV+RG+FRS+ Y ++E
Sbjct: 793 SVIMNRSAVDRGFFRSVFYRSYKE 816
>RGD|1309477 [details] [associations]
symbol:Polr2b "polymerase (RNA) II (DNA directed) polypeptide B"
species:10116 "Rattus norvegicus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA;ISO] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0004672 "protein kinase
activity" evidence=IEA;ISO] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=ISO] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IEA;ISO]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA;ISO] [GO:0006468 "protein phosphorylation"
evidence=ISO] [GO:0008150 "biological_process" evidence=ND]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 RGD:1309477 PANTHER:PTHR20856 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03010 GeneTree:ENSGT00690000102234 CTD:5431
EMBL:CH473981 RefSeq:NP_001099472.1 UniGene:Rn.153952
Ensembl:ENSRNOT00000039252 GeneID:289561 KEGG:rno:289561
NextBio:629984 Uniprot:G3V8Y5
Length = 1174
Score = 852 (305.0 bits), Expect = 4.7e-172, Sum P(2) = 4.7e-172
Identities = 161/191 (84%), Positives = 178/191 (93%)
Query: 75 RSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFRSYKDAESKR 134
RSMEYLRFRELPAGINSIVAI YTGYNQEDSVI+N SAV+RG+FRSVF+RSYK+ ESK+
Sbjct: 762 RSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKK 821
Query: 135 IGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENEDELE 194
DQEE FEKP R+TCQGMR+AIYDKLDDDG+IAPG+RVSGDDV+IGKT+TLPENEDELE
Sbjct: 822 GFDQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELE 881
Query: 195 GTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQ 254
T +R++KRD STFLR SETGIVDQVM+TLN +GYKFCKIRVRSVRIPQIGDKFASRHGQ
Sbjct: 882 STNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQ 941
Query: 255 KGTCGIQYRQE 265
KGTCGIQYRQE
Sbjct: 942 KGTCGIQYRQE 952
Score = 842 (301.5 bits), Expect = 4.7e-172, Sum P(2) = 4.7e-172
Identities = 152/187 (81%), Positives = 174/187 (93%)
Query: 265 EVSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
+VS+NKGEIGDATPFNDAVNVQKIS LL +YGY LRGNEV++NG TGRKI +Q+F+GPTY
Sbjct: 988 KVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTY 1047
Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
YQRLKHMVDDKIHSRARGP+QIL RQPMEGR+RDGGLRFGEMERDCQI+HGAAQFLRERL
Sbjct: 1048 YQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERL 1107
Query: 385 FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
FE SDPY++HVCN CG++AIAN R +T+EC+GC+NKTQIS VR+PYA KLLFQELMSM+I
Sbjct: 1108 FEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSI 1167
Query: 445 APRLMVV 451
APR+M V
Sbjct: 1168 APRMMSV 1174
Score = 372 (136.0 bits), Expect = 2.5e-121, Sum P(2) = 2.5e-121
Identities = 71/84 (84%), Positives = 77/84 (91%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
MGVYITNFHVRMDTLAHVLYYP KPLVTTRSMEYLRFRELPAGINSIVAI YTGYNQED
Sbjct: 733 MGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQED 792
Query: 61 SVILNASAVERGYFRSMEYLRFRE 84
SVI+N SAV+RG+FRS+ Y ++E
Sbjct: 793 SVIMNRSAVDRGFFRSVFYRSYKE 816
>MGI|MGI:2388280 [details] [associations]
symbol:Polr2b "polymerase (RNA) II (DNA directed)
polypeptide B" species:10090 "Mus musculus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IC;ISO] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0006468 "protein phosphorylation" evidence=ISO]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 MGI:MGI:2388280 PANTHER:PTHR20856 GO:GO:0046872
GO:GO:0003677 GO:GO:0003682 GO:GO:0004672 GO:GO:0006366
GO:GO:0003899 GO:GO:0005665 eggNOG:COG0085 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 KO:K03010 OMA:IMIVFRA
GeneTree:ENSGT00690000102234 HOGENOM:HOG000222962 CTD:5431
HOVERGEN:HBG017744 OrthoDB:EOG4JQ3WQ EMBL:BC038472 IPI:IPI00320034
RefSeq:NP_722493.2 UniGene:Mm.273217 ProteinModelPortal:Q8CFI7
DIP:DIP-57023N IntAct:Q8CFI7 STRING:Q8CFI7 PhosphoSite:Q8CFI7
PaxDb:Q8CFI7 PRIDE:Q8CFI7 Ensembl:ENSMUST00000031167 GeneID:231329
KEGG:mmu:231329 UCSC:uc008xwe.2 InParanoid:Q8CFI7 ChiTaRS:POLR2B
NextBio:380519 Bgee:Q8CFI7 CleanEx:MM_POLR2B Genevestigator:Q8CFI7
GermOnline:ENSMUSG00000029250 Uniprot:Q8CFI7
Length = 1174
Score = 848 (303.6 bits), Expect = 1.3e-171, Sum P(2) = 1.3e-171
Identities = 160/191 (83%), Positives = 178/191 (93%)
Query: 75 RSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFRSYKDAESKR 134
RSMEYLRFRELPAGINSIVAI YTGYNQEDSVI+N SAV+RG+FRSVF+RSYK+ ESK+
Sbjct: 762 RSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKK 821
Query: 135 IGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENEDELE 194
DQEE FEKP R+TCQGMR+AIY+KLDDDG+IAPG+RVSGDDV+IGKT+TLPENEDELE
Sbjct: 822 GFDQEEVFEKPTRETCQGMRHAIYEKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELE 881
Query: 195 GTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQ 254
T +R++KRD STFLR SETGIVDQVM+TLN +GYKFCKIRVRSVRIPQIGDKFASRHGQ
Sbjct: 882 STNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQ 941
Query: 255 KGTCGIQYRQE 265
KGTCGIQYRQE
Sbjct: 942 KGTCGIQYRQE 952
Score = 842 (301.5 bits), Expect = 1.3e-171, Sum P(2) = 1.3e-171
Identities = 152/187 (81%), Positives = 174/187 (93%)
Query: 265 EVSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
+VS+NKGEIGDATPFNDAVNVQKIS LL +YGY LRGNEV++NG TGRKI +Q+F+GPTY
Sbjct: 988 KVSANKGEIGDATPFNDAVNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTY 1047
Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
YQRLKHMVDDKIHSRARGP+QIL RQPMEGR+RDGGLRFGEMERDCQI+HGAAQFLRERL
Sbjct: 1048 YQRLKHMVDDKIHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERL 1107
Query: 385 FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
FE SDPY++HVCN CG++AIAN R +T+EC+GC+NKTQIS VR+PYA KLLFQELMSM+I
Sbjct: 1108 FEASDPYQVHVCNLCGIMAIANTRTHTYECRGCRNKTQISLVRMPYACKLLFQELMSMSI 1167
Query: 445 APRLMVV 451
APR+M V
Sbjct: 1168 APRMMSV 1174
Score = 372 (136.0 bits), Expect = 2.5e-121, Sum P(2) = 2.5e-121
Identities = 71/84 (84%), Positives = 77/84 (91%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
MGVYITNFHVRMDTLAHVLYYP KPLVTTRSMEYLRFRELPAGINSIVAI YTGYNQED
Sbjct: 733 MGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQED 792
Query: 61 SVILNASAVERGYFRSMEYLRFRE 84
SVI+N SAV+RG+FRS+ Y ++E
Sbjct: 793 SVIMNRSAVDRGFFRSVFYRSYKE 816
>WB|WBGene00016140 [details] [associations]
symbol:rpb-2 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0008406 "gonad development" evidence=IMP] [GO:0016477 "cell
migration" evidence=IMP] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005634 GO:GO:0008340
GO:GO:0009792 GO:GO:0016477 GO:GO:0008406 GO:GO:0002119
GO:GO:0046872 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
EMBL:FO080680 eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03010 OMA:IMIVFRA EMBL:U10333 PIR:E88445
PIR:T43701 RefSeq:NP_498047.1 ProteinModelPortal:Q10578 SMR:Q10578
STRING:Q10578 PaxDb:Q10578 EnsemblMetazoa:C26E6.4.1
EnsemblMetazoa:C26E6.4.2 GeneID:175668 KEGG:cel:CELE_C26E6.4
CTD:175668 WormBase:C26E6.4 GeneTree:ENSGT00690000102234
HOGENOM:HOG000222962 InParanoid:Q10578 NextBio:889138
Uniprot:Q10578
Length = 1193
Score = 836 (299.3 bits), Expect = 1.3e-157, Sum P(2) = 1.3e-157
Identities = 151/186 (81%), Positives = 170/186 (91%)
Query: 265 EVSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
++S+NKGEIGDATPFND VNVQKIS LL EYGY LRGNEVM+NGHTG+K+ Q+F GPTY
Sbjct: 994 KLSANKGEIGDATPFNDTVNVQKISGLLCEYGYHLRGNEVMYNGHTGKKLTTQIFFGPTY 1053
Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
YQRLKHMVDDKIHSRARGP+Q++ RQPMEGRARDGGLRFGEMERDCQISHGA QFLRERL
Sbjct: 1054 YQRLKHMVDDKIHSRARGPIQMMNRQPMEGRARDGGLRFGEMERDCQISHGATQFLRERL 1113
Query: 385 FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
FEVSDPY ++VCN CGLI +AN+R N+FECK C+NKTQ+S VR+PYA KLLFQELMSM+I
Sbjct: 1114 FEVSDPYHVYVCNNCGLIVVANLRTNSFECKACRNKTQVSAVRIPYACKLLFQELMSMSI 1173
Query: 445 APRLMV 450
APRLMV
Sbjct: 1174 APRLMV 1179
Score = 726 (260.6 bits), Expect = 1.3e-157, Sum P(2) = 1.3e-157
Identities = 136/191 (71%), Positives = 164/191 (85%)
Query: 75 RSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFRSYKDAESKR 134
RSMEYLRF ELPAGIN+IVAIL Y+GYNQEDSVI+N SA++RG FRSVF+RSY+D E+
Sbjct: 768 RSMEYLRFNELPAGINAIVAILSYSGYNQEDSVIMNNSAIDRGLFRSVFYRSYRDNEANL 827
Query: 135 IGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENEDELE 194
EE EKP R+ C GMR+++YDKLD+DGII+PG+RVSGDDV+IGKT+ LP+ +D+L+
Sbjct: 828 DNANEELIEKPTREKCSGMRHSLYDKLDEDGIISPGMRVSGDDVIIGKTVALPDIDDDLD 887
Query: 195 GTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQ 254
+ K++ KRD STFLR+SETGIVDQVML+LN DG KF KIR+RSVR+PQIGDKFASRHGQ
Sbjct: 888 ASGKKYPKRDASTFLRSSETGIVDQVMLSLNSDGNKFVKIRMRSVRLPQIGDKFASRHGQ 947
Query: 255 KGTCGIQYRQE 265
KGT GI YRQE
Sbjct: 948 KGTMGIMYRQE 958
Score = 358 (131.1 bits), Expect = 1.0e-118, Sum P(2) = 1.0e-118
Identities = 68/91 (74%), Positives = 79/91 (86%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
MGVY TNFHVRMDTLAHVLYYP KPLVTTRSMEYLRF ELPAGIN+IVAIL Y+GYNQED
Sbjct: 739 MGVYTTNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFNELPAGINAIVAILSYSGYNQED 798
Query: 61 SVILNASAVERGYFRSMEYLRFRELPAGINS 91
SVI+N SA++RG FRS+ Y +R+ A +++
Sbjct: 799 SVIMNNSAIDRGLFRSVFYRSYRDNEANLDN 829
Score = 37 (18.1 bits), Expect = 2.1e-32, Sum P(2) = 2.1e-32
Identities = 14/70 (20%), Positives = 30/70 (42%)
Query: 89 INSIVAILCYTGYN-QEDSVILNASAVERG----YFRSVFFRSYKDAESKRIGDQEE-QF 142
+ I +LC GY+ + + V+ N ++ +F +++ K +I +
Sbjct: 1014 VQKISGLLCEYGYHLRGNEVMYNGHTGKKLTTQIFFGPTYYQRLKHMVDDKIHSRARGPI 1073
Query: 143 EKPNRQTCQG 152
+ NRQ +G
Sbjct: 1074 QMMNRQPMEG 1083
>DICTYBASE|DDB_G0288257 [details] [associations]
symbol:rpb2 "RNA polymerase II core subunit"
species:44689 "Dictyostelium discoideum" [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA;ISS] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=ISS] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0016779 "nucleotidyltransferase activity"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 dictyBase:DDB_G0288257 PANTHER:PTHR20856
GO:GO:0046872 GO:GO:0003677 GenomeReviews:CM000154_GR GO:GO:0006366
EMBL:AAFI02000109 GO:GO:0003899 GO:GO:0005665 HSSP:P08518
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03010 OMA:IMIVFRA RefSeq:XP_636812.1 STRING:Q54J75 PRIDE:Q54J75
EnsemblProtists:DDB0216277 GeneID:8626529 KEGG:ddi:DDB_G0288257
ProtClustDB:CLSZ2429137 Uniprot:Q54J75
Length = 1170
Score = 758 (271.9 bits), Expect = 1.7e-146, Sum P(2) = 1.7e-146
Identities = 136/184 (73%), Positives = 166/184 (90%)
Query: 265 EVSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
+VS++ G+ GDATPF D V V+ IS L + GYQ+ G+EVM+NGHTGR+++AQ+F+GPTY
Sbjct: 984 KVSASTGDEGDATPFTD-VTVEAISQALHKIGYQMTGHEVMYNGHTGRRMDAQIFIGPTY 1042
Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
YQRLKHMVDDKIHSR+RGPVQIL RQP+EGR+RDGGLRFGEMERDC ISHGAAQFL+ERL
Sbjct: 1043 YQRLKHMVDDKIHSRSRGPVQILTRQPVEGRSRDGGLRFGEMERDCMISHGAAQFLKERL 1102
Query: 385 FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
F+ SD YR+H+C+ CGLIAIAN++ N+FEC+ CKNKTQISQ+R+PYAAKLLFQELMSM+I
Sbjct: 1103 FDQSDSYRVHICDICGLIAIANLKKNSFECRRCKNKTQISQIRMPYAAKLLFQELMSMSI 1162
Query: 445 APRL 448
APR+
Sbjct: 1163 APRM 1166
Score = 706 (253.6 bits), Expect = 1.7e-146, Sum P(2) = 1.7e-146
Identities = 128/191 (67%), Positives = 160/191 (83%)
Query: 75 RSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFRSYKDAESKR 134
RSMEYL FRELPAG N VAI CY+GYNQEDSVILN SA++RG FRS+F+R+YKD + K+
Sbjct: 758 RSMEYLHFRELPAGQNVCVAIACYSGYNQEDSVILNQSAIDRGLFRSMFYRAYKDEQKKQ 817
Query: 135 IGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENEDELE 194
EE FEKP R TC GMR+ Y+K+DDDG++APG+RV+GDD++IGKT LP ++D+L
Sbjct: 818 TSLMEEVFEKPERDTCAGMRHGSYEKIDDDGLVAPGVRVAGDDIIIGKTTPLPPSDDDLG 877
Query: 195 GTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQ 254
T+R +KRD ST LR+SETGIVDQV+LT + +G+KFCK+RVRS+R+PQIGDKF+SRHGQ
Sbjct: 878 PKTRRHTKRDSSTALRSSETGIVDQVILTTSGEGFKFCKVRVRSMRVPQIGDKFSSRHGQ 937
Query: 255 KGTCGIQYRQE 265
KGTCG+ YRQE
Sbjct: 938 KGTCGMAYRQE 948
Score = 333 (122.3 bits), Expect = 4.3e-107, Sum P(2) = 4.3e-107
Identities = 62/84 (73%), Positives = 72/84 (85%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
MGVYITN+ +RMDT+AHVL+YP KPLVTTRSMEYL FRELPAG N VAI CY+GYNQED
Sbjct: 729 MGVYITNYQLRMDTMAHVLFYPQKPLVTTRSMEYLHFRELPAGQNVCVAIACYSGYNQED 788
Query: 61 SVILNASAVERGYFRSMEYLRFRE 84
SVILN SA++RG FRSM Y +++
Sbjct: 789 SVILNQSAIDRGLFRSMFYRAYKD 812
>ZFIN|ZDB-GENE-041008-1 [details] [associations]
symbol:polr2b "polymerase (RNA) II (DNA directed)
polypeptide B" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 ZFIN:ZDB-GENE-041008-1
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
GeneTree:ENSGT00690000102234 EMBL:AL954718 EMBL:CABZ01048450
EMBL:CABZ01048451 IPI:IPI00944344 Ensembl:ENSDART00000124865
ArrayExpress:F1QXY8 Bgee:F1QXY8 Uniprot:F1QXY8
Length = 1117
Score = 845 (302.5 bits), Expect = 6.1e-144, Sum P(2) = 6.1e-144
Identities = 159/192 (82%), Positives = 179/192 (93%)
Query: 75 RSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFRSYKDAESKR 134
RSMEYLRFRELPAGINSIVAI YTGYNQEDSVI+N SAV+RG+FRSVF+RSYK+ ESK+
Sbjct: 762 RSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKK 821
Query: 135 IGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENEDELE 194
DQEE FEKP R+TCQGMR+AIYDKLDDDG+IAPG+RVSG+DV+IGKT+TLPEN+DEL+
Sbjct: 822 GFDQEEIFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGEDVIIGKTVTLPENDDELD 881
Query: 195 GTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQ 254
T +R++KRD STFLR SETGIVDQVM+TLN +GYKFCKIRVRSVRIPQIGDKFASRHGQ
Sbjct: 882 STNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQ 941
Query: 255 KGTCGIQYRQEV 266
KGTCGIQYRQEV
Sbjct: 942 KGTCGIQYRQEV 953
Score = 583 (210.3 bits), Expect = 6.1e-144, Sum P(2) = 6.1e-144
Identities = 108/130 (83%), Positives = 121/130 (93%)
Query: 265 EVSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
+VS+NKGEIGDATPFNDAVNVQK+S LL EYGY LRGNEV++NG TGRK+ +Q+F+GPTY
Sbjct: 988 KVSANKGEIGDATPFNDAVNVQKVSNLLSEYGYHLRGNEVLYNGFTGRKLTSQIFVGPTY 1047
Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRAR--DGGLRFGEMERDCQISHGAAQFLRE 382
YQRLKHMVDDKIHSRARGPVQIL RQPMEGR+R DGGLRFGEMERDCQI+HGAAQFL+E
Sbjct: 1048 YQRLKHMVDDKIHSRARGPVQILNRQPMEGRSRRSDGGLRFGEMERDCQIAHGAAQFLKE 1107
Query: 383 RLFEVSDPYR 392
RLFE SDPY+
Sbjct: 1108 RLFEASDPYQ 1117
Score = 372 (136.0 bits), Expect = 5.1e-92, Sum P(2) = 5.1e-92
Identities = 71/84 (84%), Positives = 77/84 (91%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
MGVYITNFHVRMDTLAHVLYYP KPLVTTRSMEYLRFRELPAGINSIVAI YTGYNQED
Sbjct: 733 MGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQED 792
Query: 61 SVILNASAVERGYFRSMEYLRFRE 84
SVI+N SAV+RG+FRS+ Y ++E
Sbjct: 793 SVIMNRSAVDRGFFRSVFYRSYKE 816
>TAIR|locus:2119013 [details] [associations]
symbol:NRPB2 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA;ISS] [GO:0009793 "embryo development
ending in seed dormancy" evidence=NAS] [GO:0032549 "ribonucleoside
binding" evidence=IEA] [GO:0016591 "DNA-directed RNA polymerase II,
holoenzyme" evidence=ISS] [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=IPI] [GO:0005829 "cytosol" evidence=IDA]
[GO:0009506 "plasmodesma" evidence=IDA] [GO:0000394 "RNA splicing,
via endonucleolytic cleavage and ligation" evidence=RCA]
[GO:0000956 "nuclear-transcribed mRNA catabolic process"
evidence=RCA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=RCA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005829 GO:GO:0009506
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0006351 EMBL:AL161555 EMBL:AL035527 GO:GO:0003899
GO:GO:0005665 eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 EMBL:Z19120 EMBL:Z19121 IPI:IPI00524372
PIR:T05846 RefSeq:NP_193902.1 UniGene:At.112
ProteinModelPortal:P38420 STRING:P38420 PaxDb:P38420 PRIDE:P38420
EnsemblPlants:AT4G21710.1 GeneID:828259 KEGG:ath:AT4G21710
TAIR:At4g21710 HOGENOM:HOG000218612 InParanoid:P38420 KO:K03010
OMA:IMIVFRA PhylomeDB:P38420 ProtClustDB:CLSN2685591
Genevestigator:P38420 GermOnline:AT4G21710 Uniprot:P38420
Length = 1188
Score = 715 (256.8 bits), Expect = 2.2e-134, Sum P(2) = 2.2e-134
Identities = 132/185 (71%), Positives = 154/185 (83%)
Query: 265 EVSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
+V+++ G+ GDATPF D V V IS L + GYQ+RG E M+NGHTGR + A +FLGPTY
Sbjct: 994 KVAAHMGKEGDATPFTD-VTVDNISKALHKCGYQMRGFERMYNGHTGRPLTAMIFLGPTY 1052
Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
YQRLKHMVDDKIHSR RGPVQIL RQP EGR+RDGGLRFGEMERDC I+HGAA FL+ERL
Sbjct: 1053 YQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERL 1112
Query: 385 FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
F+ SD YR+HVC CGLIAIAN++ N+FEC+GCKNKT I QV +PYA KLLFQELMSM I
Sbjct: 1113 FDQSDAYRVHVCEVCGLIAIANLKKNSFECRGCKNKTDIVQVYIPYACKLLFQELMSMAI 1172
Query: 445 APRLM 449
APR++
Sbjct: 1173 APRML 1177
Score = 638 (229.6 bits), Expect = 2.2e-134, Sum P(2) = 2.2e-134
Identities = 121/192 (63%), Positives = 157/192 (81%)
Query: 75 RSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFRSYKDAESKR 134
R+ME+L FR+LPAGIN+IVAI CY+GYNQEDSVI+N S+++RG+FRS+FFRSY+D E K+
Sbjct: 770 RAMEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRD-EEKK 828
Query: 135 IGDQ-EEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENEDEL 193
+G +E F +P+R + GMR+ YDKLDDDG+ PG RVSG+DV+IGKT P ++DE
Sbjct: 829 MGTLVKEDFGRPDRGSTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTT--PISQDEA 886
Query: 194 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 253
+G + R+++RD S LR+SETG+VDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 887 QGQSSRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 946
Query: 254 QKGTCGIQYRQE 265
QKGT G+ Y QE
Sbjct: 947 QKGTVGMTYTQE 958
Score = 328 (120.5 bits), Expect = 1.2e-101, Sum P(2) = 1.2e-101
Identities = 58/93 (62%), Positives = 79/93 (84%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
MG+Y+TN+ RMDTLA+VLYYP KPLVTTR+ME+L FR+LPAGIN+IVAI CY+GYNQED
Sbjct: 741 MGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQED 800
Query: 61 SVILNASAVERGYFRSMEYLRFRELPAGINSIV 93
SVI+N S+++RG+FRS+ + +R+ + ++V
Sbjct: 801 SVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLV 833
>CGD|CAL0004145 [details] [associations]
symbol:orf19.3349 species:5476 "Candida albicans" [GO:0042493
"response to drug" evidence=IMP] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0000775
"chromosome, centromeric region" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003968 "RNA-directed RNA polymerase activity" evidence=IEA]
[GO:0031048 "chromatin silencing by small RNA" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 CGD:CAL0004145 PANTHER:PTHR20856 GO:GO:0042493
GO:GO:0003677 GO:GO:0006351 EMBL:AACQ01000045 EMBL:AACQ01000042
GO:GO:0003899 eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03010 HOGENOM:HOG000222962
RefSeq:XP_718172.1 RefSeq:XP_718439.1 STRING:Q5A8Y5 GeneID:3639932
GeneID:3640223 KEGG:cal:CaO19.10857 KEGG:cal:CaO19.3349
Uniprot:Q5A8Y5
Length = 1234
Score = 709 (254.6 bits), Expect = 1.2e-131, Sum P(2) = 1.2e-131
Identities = 130/185 (70%), Positives = 158/185 (85%)
Query: 265 EVSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
+VSS G GDA+PF D V ++ISTLL+++GYQ RG EVM+NGHTG+K+ AQVF GPTY
Sbjct: 1040 KVSSLSGFEGDASPFTD-VTTEQISTLLRDHGYQSRGFEVMYNGHTGKKLMAQVFFGPTY 1098
Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
YQRL+HMVDDKIH+RARGPVQ+L RQP+EGR+RDGGLRFGEMERDC I+HGAA FL+ERL
Sbjct: 1099 YQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAGFLKERL 1158
Query: 385 FEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMN 443
E SD +R+HVC CGL++ IAN++ N FEC+ CKNKT I Q+ +PYAAKLLFQELM+MN
Sbjct: 1159 MEASDAFRVHVCGMCGLMSVIANLKKNQFECRSCKNKTNIYQIHIPYAAKLLFQELMAMN 1218
Query: 444 IAPRL 448
I+PRL
Sbjct: 1219 ISPRL 1223
Score = 620 (223.3 bits), Expect = 1.2e-131, Sum P(2) = 1.2e-131
Identities = 119/195 (61%), Positives = 154/195 (78%)
Query: 72 GYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFRSYKDAE 131
G RSMEYL+FRELPAG N+IVAI CY+GYNQEDS+I+N S+++RG FRS+FFRSY D E
Sbjct: 811 GTTRSMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDIE 870
Query: 132 SKRIGDQE-EQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENE 190
KR G + E FEKP R +++ Y+KLD+DG+IAPG+RVSG+D++IGKT +P +
Sbjct: 871 -KRQGMKALETFEKPTRSDTLRLKHGTYEKLDEDGLIAPGVRVSGEDIIIGKTTPIPADA 929
Query: 191 DELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFAS 250
+EL T+ +KRD ST LR++E+GIVDQV+LT N DG KF K+R+R+ ++PQIGDKFAS
Sbjct: 930 EELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDGSKFVKVRMRTTKVPQIGDKFAS 989
Query: 251 RHGQKGTCGIQYRQE 265
RHGQKGT G+ YR E
Sbjct: 990 RHGQKGTIGVTYRHE 1004
Score = 312 (114.9 bits), Expect = 3.9e-99, Sum P(2) = 3.9e-99
Identities = 55/85 (64%), Positives = 74/85 (87%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
MGV++TN+ VRMDT+A++LYYP KPL TTRSMEYL+FRELPAG N+IVAI CY+GYNQED
Sbjct: 785 MGVFLTNYSVRMDTMANILYYPQKPLGTTRSMEYLKFRELPAGQNAIVAIACYSGYNQED 844
Query: 61 SVILNASAVERGYFRSMEYLRFREL 85
S+I+N S+++RG FRS+ + + ++
Sbjct: 845 SMIMNQSSIDRGLFRSLFFRSYMDI 869
>UNIPROTKB|Q5A8Y5 [details] [associations]
symbol:RPB140 "DNA-directed RNA polymerase" species:237561
"Candida albicans SC5314" [GO:0042493 "response to drug"
evidence=IMP] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 CGD:CAL0004145 PANTHER:PTHR20856 GO:GO:0042493
GO:GO:0003677 GO:GO:0006351 EMBL:AACQ01000045 EMBL:AACQ01000042
GO:GO:0003899 eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03010 HOGENOM:HOG000222962
RefSeq:XP_718172.1 RefSeq:XP_718439.1 STRING:Q5A8Y5 GeneID:3639932
GeneID:3640223 KEGG:cal:CaO19.10857 KEGG:cal:CaO19.3349
Uniprot:Q5A8Y5
Length = 1234
Score = 709 (254.6 bits), Expect = 1.2e-131, Sum P(2) = 1.2e-131
Identities = 130/185 (70%), Positives = 158/185 (85%)
Query: 265 EVSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
+VSS G GDA+PF D V ++ISTLL+++GYQ RG EVM+NGHTG+K+ AQVF GPTY
Sbjct: 1040 KVSSLSGFEGDASPFTD-VTTEQISTLLRDHGYQSRGFEVMYNGHTGKKLMAQVFFGPTY 1098
Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
YQRL+HMVDDKIH+RARGPVQ+L RQP+EGR+RDGGLRFGEMERDC I+HGAA FL+ERL
Sbjct: 1099 YQRLRHMVDDKIHARARGPVQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAAGFLKERL 1158
Query: 385 FEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMN 443
E SD +R+HVC CGL++ IAN++ N FEC+ CKNKT I Q+ +PYAAKLLFQELM+MN
Sbjct: 1159 MEASDAFRVHVCGMCGLMSVIANLKKNQFECRSCKNKTNIYQIHIPYAAKLLFQELMAMN 1218
Query: 444 IAPRL 448
I+PRL
Sbjct: 1219 ISPRL 1223
Score = 620 (223.3 bits), Expect = 1.2e-131, Sum P(2) = 1.2e-131
Identities = 119/195 (61%), Positives = 154/195 (78%)
Query: 72 GYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFRSYKDAE 131
G RSMEYL+FRELPAG N+IVAI CY+GYNQEDS+I+N S+++RG FRS+FFRSY D E
Sbjct: 811 GTTRSMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRSYMDIE 870
Query: 132 SKRIGDQE-EQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENE 190
KR G + E FEKP R +++ Y+KLD+DG+IAPG+RVSG+D++IGKT +P +
Sbjct: 871 -KRQGMKALETFEKPTRSDTLRLKHGTYEKLDEDGLIAPGVRVSGEDIIIGKTTPIPADA 929
Query: 191 DELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFAS 250
+EL T+ +KRD ST LR++E+GIVDQV+LT N DG KF K+R+R+ ++PQIGDKFAS
Sbjct: 930 EELGQRTQYHTKRDASTPLRSTESGIVDQVLLTTNGDGSKFVKVRMRTTKVPQIGDKFAS 989
Query: 251 RHGQKGTCGIQYRQE 265
RHGQKGT G+ YR E
Sbjct: 990 RHGQKGTIGVTYRHE 1004
Score = 312 (114.9 bits), Expect = 3.9e-99, Sum P(2) = 3.9e-99
Identities = 55/85 (64%), Positives = 74/85 (87%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
MGV++TN+ VRMDT+A++LYYP KPL TTRSMEYL+FRELPAG N+IVAI CY+GYNQED
Sbjct: 785 MGVFLTNYSVRMDTMANILYYPQKPLGTTRSMEYLKFRELPAGQNAIVAIACYSGYNQED 844
Query: 61 SVILNASAVERGYFRSMEYLRFREL 85
S+I+N S+++RG FRS+ + + ++
Sbjct: 845 SMIMNQSSIDRGLFRSLFFRSYMDI 869
>POMBASE|SPAC23G3.01 [details] [associations]
symbol:rpb2 "RNA polymerase II complex subunit Rpb2"
species:4896 "Schizosaccharomyces pombe" [GO:0000775 "chromosome,
centromeric region" evidence=IDA] [GO:0000790 "nuclear chromatin"
evidence=IC] [GO:0003677 "DNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006366 "transcription from
RNA polymerase II promoter" evidence=IGI] [GO:0031048 "chromatin
silencing by small RNA" evidence=IMP] [GO:0032549 "ribonucleoside
binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IGI] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 PomBase:SPAC23G3.01 PANTHER:PTHR20856 GO:GO:0005829
EMBL:CU329670 GO:GO:0000775 GenomeReviews:CU329670_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0003723 GO:GO:0000790 GO:GO:0006366
GO:GO:0031048 GO:GO:0003899 GO:GO:0005665 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150 PDB:3H0G
PDBsum:3H0G KO:K03010 OMA:IMIVFRA HOGENOM:HOG000222962 EMBL:D13337
PIR:S35548 PIR:T50175 RefSeq:NP_593101.2 ProteinModelPortal:Q02061
IntAct:Q02061 MINT:MINT-1214536 STRING:Q02061
EnsemblFungi:SPAC23G3.01.1 GeneID:2541446 KEGG:spo:SPAC23G3.01
OrthoDB:EOG45HW5D EvolutionaryTrace:Q02061 NextBio:20802548
Uniprot:Q02061
Length = 1210
Score = 700 (251.5 bits), Expect = 1.7e-131, Sum P(2) = 1.7e-131
Identities = 131/184 (71%), Positives = 158/184 (85%)
Query: 265 EVSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
+VS+ G GDATPF D V V+ +S LL+ +G+Q RG EVM++GHTGRK+ AQVFLGPTY
Sbjct: 1022 KVSALSGFEGDATPFTD-VTVEAVSKLLRSHGFQSRGFEVMYHGHTGRKLVAQVFLGPTY 1080
Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
YQRLKH+VDDKIH+RARGPVQIL RQP+EGR+RDGGLRFGEMERDCQISHG + LRERL
Sbjct: 1081 YQRLKHLVDDKIHARARGPVQILTRQPVEGRSRDGGLRFGEMERDCQISHGCSSVLRERL 1140
Query: 385 FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
F+ SD YR+ VC+ CGLIAIA+ + +++EC+ C+N+T+ SQV LPYAAKLLFQELMSMNI
Sbjct: 1141 FDCSDAYRVIVCDICGLIAIASYKKDSYECRSCQNRTRFSQVYLPYAAKLLFQELMSMNI 1200
Query: 445 APRL 448
APRL
Sbjct: 1201 APRL 1204
Score = 627 (225.8 bits), Expect = 1.7e-131, Sum P(2) = 1.7e-131
Identities = 120/192 (62%), Positives = 155/192 (80%)
Query: 75 RSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFRSYKDAESKR 134
RSMEYL+FRELPAG N+IVAILCY+GYNQEDS+I+N ++++RG FRS+F+R+Y D E K+
Sbjct: 796 RSMEYLKFRELPAGQNAIVAILCYSGYNQEDSIIMNQASIDRGLFRSIFYRTYTDQE-KK 854
Query: 135 IG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENEDEL 193
IG E+FE+P R T M++ YDKL+DDG+IAPG RVSG+D++IGKT +P + +EL
Sbjct: 855 IGMTVMEEFERPVRSTTLRMKHGTYDKLEDDGLIAPGTRVSGEDIIIGKTAPIPLDHEEL 914
Query: 194 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 253
T+ +KRD ST LR++E+GIVDQVM+T N +G KF K+R+RS RIPQIGDKFASRHG
Sbjct: 915 GQRTQLHAKRDVSTPLRSTESGIVDQVMVTTNQEGLKFVKVRMRSTRIPQIGDKFASRHG 974
Query: 254 QKGTCGIQYRQE 265
QKGT G+ YR E
Sbjct: 975 QKGTIGMTYRHE 986
Score = 325 (119.5 bits), Expect = 1.3e-99, Sum P(2) = 1.3e-99
Identities = 57/84 (67%), Positives = 74/84 (88%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
MGVY+TN+ VRMDT+A++LYYP KPL TTRSMEYL+FRELPAG N+IVAILCY+GYNQED
Sbjct: 767 MGVYLTNYQVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQED 826
Query: 61 SVILNASAVERGYFRSMEYLRFRE 84
S+I+N ++++RG FRS+ Y + +
Sbjct: 827 SIIMNQASIDRGLFRSIFYRTYTD 850
>SGD|S000005677 [details] [associations]
symbol:RPB2 "RNA polymerase II second largest subunit B150"
species:4932 "Saccharomyces cerevisiae" [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA;IDA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003968 "RNA-directed
RNA polymerase activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IDA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 SGD:S000005677 PANTHER:PTHR20856 GO:GO:0005739
EMBL:BK006948 GO:GO:0046872 GO:GO:0003677 GO:GO:0006366
GO:GO:0003899 EMBL:U55020 RefSeq:NP_014796.3 GeneID:854324
KEGG:sce:YOR153W KO:K08711 GO:GO:0005665 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150 PDB:1I3Q
PDB:1I50 PDB:1I6H PDB:1K83 PDB:1NIK PDB:1NT9 PDB:1PQV PDB:1R5U
PDB:1R9S PDB:1R9T PDB:1SFO PDB:1TWA PDB:1TWC PDB:1TWF PDB:1TWG
PDB:1TWH PDB:1WCM PDB:1Y1V PDB:1Y1W PDB:1Y1Y PDB:1Y77 PDB:2B63
PDB:2B8K PDB:2E2H PDB:2E2I PDB:2E2J PDB:2JA5 PDB:2JA6 PDB:2JA7
PDB:2JA8 PDB:2NVQ PDB:2NVT PDB:2NVX PDB:2NVY PDB:2NVZ PDB:2R7Z
PDB:2R92 PDB:2R93 PDB:2VUM PDB:2YU9 PDB:3CQZ PDB:3FKI PDB:3GTG
PDB:3GTJ PDB:3GTK PDB:3GTL PDB:3GTM PDB:3GTO PDB:3GTP PDB:3GTQ
PDB:3H3V PDB:3HOU PDB:3HOV PDB:3HOW PDB:3HOX PDB:3HOY PDB:3HOZ
PDB:3I4M PDB:3I4N PDB:3K1F PDB:3K7A PDB:3M3Y PDB:3M4O PDB:3PO2
PDB:3PO3 PDB:3QT1 PDB:3RZD PDB:3RZO PDB:3S14 PDB:3S15 PDB:3S16
PDB:3S17 PDB:3S1M PDB:3S1N PDB:3S1Q PDB:3S1R PDB:3S2D PDB:3S2H
PDB:4A3B PDB:4A3C PDB:4A3D PDB:4A3E PDB:4A3F PDB:4A3G PDB:4A3I
PDB:4A3J PDB:4A3K PDB:4A3L PDB:4A3M PDB:4A93 PDB:4BBR PDB:4BBS
PDBsum:1I3Q PDBsum:1I50 PDBsum:1I6H PDBsum:1K83 PDBsum:1NIK
PDBsum:1NT9 PDBsum:1PQV PDBsum:1R5U PDBsum:1R9S PDBsum:1R9T
PDBsum:1SFO PDBsum:1TWA PDBsum:1TWC PDBsum:1TWF PDBsum:1TWG
PDBsum:1TWH PDBsum:1WCM PDBsum:1Y1V PDBsum:1Y1W PDBsum:1Y1Y
PDBsum:1Y77 PDBsum:2B63 PDBsum:2B8K PDBsum:2E2H PDBsum:2E2I
PDBsum:2E2J PDBsum:2JA5 PDBsum:2JA6 PDBsum:2JA7 PDBsum:2JA8
PDBsum:2NVQ PDBsum:2NVT PDBsum:2NVX PDBsum:2NVY PDBsum:2NVZ
PDBsum:2R7Z PDBsum:2R92 PDBsum:2R93 PDBsum:2VUM PDBsum:2YU9
PDBsum:3CQZ PDBsum:3FKI PDBsum:3GTG PDBsum:3GTJ PDBsum:3GTK
PDBsum:3GTL PDBsum:3GTM PDBsum:3GTO PDBsum:3GTP PDBsum:3GTQ
PDBsum:3H3V PDBsum:3HOU PDBsum:3HOV PDBsum:3HOW PDBsum:3HOX
PDBsum:3HOY PDBsum:3HOZ PDBsum:3I4M PDBsum:3I4N PDBsum:3K1F
PDBsum:3K7A PDBsum:3M3Y PDBsum:3M4O PDBsum:3PO2 PDBsum:3PO3
PDBsum:3QT1 PDBsum:3RZD PDBsum:3RZO PDBsum:3S14 PDBsum:3S15
PDBsum:3S16 PDBsum:3S17 PDBsum:3S1M PDBsum:3S1N PDBsum:3S1Q
PDBsum:3S1R PDBsum:3S2D PDBsum:3S2H PDBsum:4A3B PDBsum:4A3C
PDBsum:4A3D PDBsum:4A3E PDBsum:4A3F PDBsum:4A3G PDBsum:4A3I
PDBsum:4A3J PDBsum:4A3K PDBsum:4A3L PDBsum:4A3M PDBsum:4A93
PDBsum:4BBR PDBsum:4BBS KO:K03010 OMA:IMIVFRA
GeneTree:ENSGT00690000102234 HOGENOM:HOG000222962 OrthoDB:EOG45HW5D
EMBL:M15693 EMBL:Z75059 EMBL:AF527884 PIR:A25884 RefSeq:NP_014794.3
ProteinModelPortal:P08518 DIP:DIP-14N IntAct:P08518
MINT:MINT-654304 STRING:P08518 PaxDb:P08518 PeptideAtlas:P08518
PRIDE:P08518 EnsemblFungi:YOR151C GeneID:854322 KEGG:sce:YOR151C
CYGD:YOR151c EvolutionaryTrace:P08518 NextBio:976360
ArrayExpress:P08518 Genevestigator:P08518 GermOnline:YOR151C
Uniprot:P08518
Length = 1224
Score = 688 (247.2 bits), Expect = 7.3e-131, Sum P(2) = 7.3e-131
Identities = 124/185 (67%), Positives = 153/185 (82%)
Query: 265 EVSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
+V++ G GDA+PF D + V+ IS LL+E+GYQ RG EVM+NGHTG+K+ AQ+F GPTY
Sbjct: 1033 KVAALSGNEGDASPFTD-ITVEGISKLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTY 1091
Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
YQRL+HMVDDKIH+RARGP+Q+L RQP+EGR+RDGGLRFGEMERDC I+HGAA FL+ERL
Sbjct: 1092 YQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAASFLKERL 1151
Query: 385 FEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMN 443
E SD +R+H+C CGL+ IA + +N FECKGC NK I Q+ +PYAAKLLFQELM+MN
Sbjct: 1152 MEASDAFRVHICGICGLMTVIAKLNHNQFECKGCDNKIDIYQIHIPYAAKLLFQELMAMN 1211
Query: 444 IAPRL 448
I PRL
Sbjct: 1212 ITPRL 1216
Score = 634 (228.2 bits), Expect = 7.3e-131, Sum P(2) = 7.3e-131
Identities = 129/215 (60%), Positives = 159/215 (73%)
Query: 54 TGYN-QEDSV--ILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILN 110
T YN + D++ IL G R+MEYL+FRELPAG N+IVAI CY+GYNQEDS+I+N
Sbjct: 783 TNYNVRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMN 842
Query: 111 ASAVERGYFRSVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPG 170
S+++RG FRS+FFRSY D E K E FEKP R M++ YDKLDDDG+IAPG
Sbjct: 843 QSSIDRGLFRSLFFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLIAPG 902
Query: 171 LRVSGDDVVIGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYK 230
+RVSG+DV+IGKT + +E+EL T SKRD ST LR++E GIVDQV++T N DG K
Sbjct: 903 VRVSGEDVIIGKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLVTTNQDGLK 962
Query: 231 FCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQE 265
F K+RVR+ +IPQIGDKFASRHGQKGT GI YR+E
Sbjct: 963 FVKVRVRTTKIPQIGDKFASRHGQKGTIGITYRRE 997
Score = 309 (113.8 bits), Expect = 1.5e-96, Sum P(2) = 1.5e-96
Identities = 54/84 (64%), Positives = 74/84 (88%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
MGV++TN++VRMDT+A++LYYP KPL TTR+MEYL+FRELPAG N+IVAI CY+GYNQED
Sbjct: 778 MGVFLTNYNVRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQED 837
Query: 61 SVILNASAVERGYFRSMEYLRFRE 84
S+I+N S+++RG FRS+ + + +
Sbjct: 838 SMIMNQSSIDRGLFRSLFFRSYMD 861
>ASPGD|ASPL0000039770 [details] [associations]
symbol:AN9120 species:162425 "Emericella nidulans"
[GO:0031048 "chromatin silencing by small RNA" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0000775 "chromosome, centromeric region" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 EMBL:BN001306 GO:GO:0006351
GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
OMA:IMIVFRA HOGENOM:HOG000222962 EnsemblFungi:CADANIAT00009490
Uniprot:C8VK81
Length = 1252
Score = 689 (247.6 bits), Expect = 9.0e-127, Sum P(2) = 9.0e-127
Identities = 129/185 (69%), Positives = 156/185 (84%)
Query: 265 EVSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
+VS+ +G GDATPF D V V IS LL+E+GYQ RG EVM+NGHTGRK+ AQVFLGPTY
Sbjct: 1059 KVSALRGFEGDATPFTD-VTVDSISRLLREHGYQSRGFEVMYNGHTGRKLVAQVFLGPTY 1117
Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
YQRL+HMVDDKIH+RARGP QIL RQP+EGRARDGGLRFGEMERDC I+HGA+ FL+ERL
Sbjct: 1118 YQRLRHMVDDKIHARARGPTQILTRQPVEGRARDGGLRFGEMERDCMIAHGASAFLKERL 1177
Query: 385 FEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMN 443
F+VSDP+R+H+C+ CGL+ IA ++ FEC+ C NK +ISQV +PYAAKLLFQEL +MN
Sbjct: 1178 FDVSDPFRVHICDDCGLMTPIAKLKKGLFECRLCNNKHRISQVHIPYAAKLLFQELAAMN 1237
Query: 444 IAPRL 448
I+ R+
Sbjct: 1238 ISARM 1242
Score = 595 (214.5 bits), Expect = 9.0e-127, Sum P(2) = 9.0e-127
Identities = 116/192 (60%), Positives = 147/192 (76%)
Query: 75 RSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFRSYKDAESKR 134
RSME+LRFRELPAG N+IVAI CY+GYNQEDSVI+N S+++RG FRS+F+R+Y D+E K
Sbjct: 833 RSMEFLRFRELPAGQNAIVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFYRTYSDSE-KM 891
Query: 135 IG-DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENEDEL 193
+G E+FEKP R GMR YDKLD+DGI+ PG+RVSG+D++IGKT L + +EL
Sbjct: 892 VGLTVVERFEKPMRSDTIGMRKGTYDKLDEDGIVNPGVRVSGEDIIIGKTAPLAPDAEEL 951
Query: 194 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 253
TK +K D ST LR++E GIVDQV++T D + K+R+R ++PQIGDKFASRHG
Sbjct: 952 GQRTKNHTKLDVSTPLRSTENGIVDQVLVTTTPDSLRSVKVRMRMTKVPQIGDKFASRHG 1011
Query: 254 QKGTCGIQYRQE 265
QKGT GI YRQE
Sbjct: 1012 QKGTIGITYRQE 1023
Score = 312 (114.9 bits), Expect = 6.8e-97, Sum P(2) = 6.8e-97
Identities = 56/84 (66%), Positives = 72/84 (85%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
MGV++TNF RM+T+A++LYYP KPL TTRSME+LRFRELPAG N+IVAI CY+GYNQED
Sbjct: 804 MGVFLTNFDQRMETMANILYYPQKPLATTRSMEFLRFRELPAGQNAIVAIACYSGYNQED 863
Query: 61 SVILNASAVERGYFRSMEYLRFRE 84
SVI+N S+++RG FRS+ Y + +
Sbjct: 864 SVIMNQSSIDRGLFRSLFYRTYSD 887
Score = 40 (19.1 bits), Expect = 3.3e-68, Sum P(2) = 3.3e-68
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 185 TLPENEDELEGTT-KRFSKRDGSTFL 209
T+P +EDE++ +R+ + G+ L
Sbjct: 69 TIPPSEDEVDPVVVRRYELKFGTVML 94
>GENEDB_PFALCIPARUM|PFB0715w [details] [associations]
symbol:PFB0715w "DNA-directed RNA polymerase II
second largest subunit, putative" species:5833 "Plasmodium
falciparum" [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=ISS] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=ISS] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 GO:GO:0006366 EMBL:AE001362 GO:GO:0003899
GO:GO:0005665 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03010 HOGENOM:HOG000222962 RefSeq:XP_001349662.2
ProteinModelPortal:O96236 PRIDE:O96236
EnsemblProtists:PFB0715w:mRNA GeneID:812744 KEGG:pfa:PFB0715w
EuPathDB:PlasmoDB:PF3D7_0215700 ProtClustDB:CLSZ2444926
Uniprot:O96236
Length = 1340
Score = 626 (225.4 bits), Expect = 8.4e-116, Sum P(3) = 8.4e-116
Identities = 112/186 (60%), Positives = 149/186 (80%)
Query: 265 EVSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
+V++ +G GDATPF+ + VQ+IS L GY+ GNE+++NGH GR + +++F+GPTY
Sbjct: 1153 KVAAIEGGEGDATPFSK-ITVQEISQKLHNLGYEKYGNEMLYNGHNGRMLKSKIFIGPTY 1211
Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
YQRLKHMV+DKIH+R+RGP+ ++ RQP EGR+RDGGLRFGEMERDC ISHG+A+ L+ERL
Sbjct: 1212 YQRLKHMVEDKIHARSRGPLTMITRQPTEGRSRDGGLRFGEMERDCMISHGSAKMLKERL 1271
Query: 385 FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
FE SD YR+HVC+ CGL IA++ N +EC C +KT ISQ+ LPYA KLLFQELM+M I
Sbjct: 1272 FEESDAYRVHVCDNCGLCCIADINKNAYECTVCNSKTNISQIYLPYACKLLFQELMTMAI 1331
Query: 445 APRLMV 450
P+L++
Sbjct: 1332 YPKLVL 1337
Score = 363 (132.8 bits), Expect = 8.4e-116, Sum P(3) = 8.4e-116
Identities = 67/117 (57%), Positives = 91/117 (77%)
Query: 77 MEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFRSYKDAESKRIG 136
MEYLRFRELPAGIN+IVAI+CYTGYNQEDS+I+N S+++RG FRSVF+R+Y E ++
Sbjct: 784 MEYLRFRELPAGINAIVAIMCYTGYNQEDSLIMNQSSIDRGLFRSVFYRTYTSEEKQQGS 843
Query: 137 DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENEDEL 193
E FEKP+ + + ++ Y KLDDDG+IAPG+RV GDD++IGK ++ED++
Sbjct: 844 LIIESFEKPSVRVVKNLKRGDYTKLDDDGLIAPGIRVLGDDIIIGKVSPNIDDEDDI 900
Score = 333 (122.3 bits), Expect = 1.2e-112, Sum P(3) = 1.2e-112
Identities = 58/79 (73%), Positives = 73/79 (92%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
MG+Y+TNF++R+DTLAH+LYYP KPLV T+ MEYLRFRELPAGIN+IVAI+CYTGYNQED
Sbjct: 753 MGIYVTNFNIRLDTLAHLLYYPQKPLVCTKVMEYLRFRELPAGINAIVAIMCYTGYNQED 812
Query: 61 SVILNASAVERGYFRSMEY 79
S+I+N S+++RG FRS+ Y
Sbjct: 813 SLIMNQSSIDRGLFRSVFY 831
Score = 220 (82.5 bits), Expect = 8.4e-116, Sum P(3) = 8.4e-116
Identities = 43/64 (67%), Positives = 51/64 (79%)
Query: 202 KRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQ 261
K+D S LR++E G++D VML+ N G KF K++VRSVRIPQIGDKFASRHGQKGT GI
Sbjct: 1054 KKDCSLSLRSNENGVIDTVMLSSNSRGNKFAKVKVRSVRIPQIGDKFASRHGQKGTIGIT 1113
Query: 262 YRQE 265
YR E
Sbjct: 1114 YRTE 1117
>UNIPROTKB|O96236 [details] [associations]
symbol:PFB0715w "DNA-directed RNA polymerase" species:36329
"Plasmodium falciparum 3D7" [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=ISS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISS]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006366 EMBL:AE001362
GO:GO:0003899 GO:GO:0005665 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03010 HOGENOM:HOG000222962
RefSeq:XP_001349662.2 ProteinModelPortal:O96236 PRIDE:O96236
EnsemblProtists:PFB0715w:mRNA GeneID:812744 KEGG:pfa:PFB0715w
EuPathDB:PlasmoDB:PF3D7_0215700 ProtClustDB:CLSZ2444926
Uniprot:O96236
Length = 1340
Score = 626 (225.4 bits), Expect = 8.4e-116, Sum P(3) = 8.4e-116
Identities = 112/186 (60%), Positives = 149/186 (80%)
Query: 265 EVSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
+V++ +G GDATPF+ + VQ+IS L GY+ GNE+++NGH GR + +++F+GPTY
Sbjct: 1153 KVAAIEGGEGDATPFSK-ITVQEISQKLHNLGYEKYGNEMLYNGHNGRMLKSKIFIGPTY 1211
Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
YQRLKHMV+DKIH+R+RGP+ ++ RQP EGR+RDGGLRFGEMERDC ISHG+A+ L+ERL
Sbjct: 1212 YQRLKHMVEDKIHARSRGPLTMITRQPTEGRSRDGGLRFGEMERDCMISHGSAKMLKERL 1271
Query: 385 FEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNI 444
FE SD YR+HVC+ CGL IA++ N +EC C +KT ISQ+ LPYA KLLFQELM+M I
Sbjct: 1272 FEESDAYRVHVCDNCGLCCIADINKNAYECTVCNSKTNISQIYLPYACKLLFQELMTMAI 1331
Query: 445 APRLMV 450
P+L++
Sbjct: 1332 YPKLVL 1337
Score = 363 (132.8 bits), Expect = 8.4e-116, Sum P(3) = 8.4e-116
Identities = 67/117 (57%), Positives = 91/117 (77%)
Query: 77 MEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFRSYKDAESKRIG 136
MEYLRFRELPAGIN+IVAI+CYTGYNQEDS+I+N S+++RG FRSVF+R+Y E ++
Sbjct: 784 MEYLRFRELPAGINAIVAIMCYTGYNQEDSLIMNQSSIDRGLFRSVFYRTYTSEEKQQGS 843
Query: 137 DQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENEDEL 193
E FEKP+ + + ++ Y KLDDDG+IAPG+RV GDD++IGK ++ED++
Sbjct: 844 LIIESFEKPSVRVVKNLKRGDYTKLDDDGLIAPGIRVLGDDIIIGKVSPNIDDEDDI 900
Score = 333 (122.3 bits), Expect = 1.2e-112, Sum P(3) = 1.2e-112
Identities = 58/79 (73%), Positives = 73/79 (92%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
MG+Y+TNF++R+DTLAH+LYYP KPLV T+ MEYLRFRELPAGIN+IVAI+CYTGYNQED
Sbjct: 753 MGIYVTNFNIRLDTLAHLLYYPQKPLVCTKVMEYLRFRELPAGINAIVAIMCYTGYNQED 812
Query: 61 SVILNASAVERGYFRSMEY 79
S+I+N S+++RG FRS+ Y
Sbjct: 813 SLIMNQSSIDRGLFRSVFY 831
Score = 220 (82.5 bits), Expect = 8.4e-116, Sum P(3) = 8.4e-116
Identities = 43/64 (67%), Positives = 51/64 (79%)
Query: 202 KRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQ 261
K+D S LR++E G++D VML+ N G KF K++VRSVRIPQIGDKFASRHGQKGT GI
Sbjct: 1054 KKDCSLSLRSNENGVIDTVMLSSNSRGNKFAKVKVRSVRIPQIGDKFASRHGQKGTIGIT 1113
Query: 262 YRQE 265
YR E
Sbjct: 1114 YRTE 1117
>FB|FBgn0004463 [details] [associations]
symbol:RpIII128 "RNA polymerase III 128kD subunit"
species:7227 "Drosophila melanogaster" [GO:0006383 "transcription
from RNA polymerase III promoter" evidence=ISS;NAS] [GO:0005666
"DNA-directed RNA polymerase III complex" evidence=ISS] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] [GO:0005634
"nucleus" evidence=NAS] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 EMBL:AE013599 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150 KO:K03021
EMBL:X58826 EMBL:AY121645 PIR:S16894 RefSeq:NP_523706.1
UniGene:Dm.2692 ProteinModelPortal:P25167 SMR:P25167 IntAct:P25167
MINT:MINT-285299 STRING:P25167 PaxDb:P25167
EnsemblMetazoa:FBtr0087977 GeneID:36289 KEGG:dme:Dmel_CG8344
CTD:36289 FlyBase:FBgn0004463 GeneTree:ENSGT00690000102214
InParanoid:P25167 OMA:DMIMNPH OrthoDB:EOG4C2FRC PhylomeDB:P25167
ChiTaRS:RpIII128 GenomeRNAi:36289 NextBio:797763 Bgee:P25167
GermOnline:CG8344 Uniprot:P25167
Length = 1137
Score = 427 (155.4 bits), Expect = 2.3e-68, Sum P(2) = 2.3e-68
Identities = 79/181 (43%), Positives = 117/181 (64%)
Query: 270 KGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQRLK 329
+G+ T F + V+ I L+ +G+ G + ++G TG + A ++ GP YYQ+LK
Sbjct: 961 EGKFHYGTAFGGS-KVEDIQAELERHGFNYVGKDFFYSGITGTPLEAYIYSGPVYYQKLK 1019
Query: 330 HMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSD 389
HMV DK+H+RARGP +L RQP +GR+R+GGLR GEMERDC IS+GA+ + ERL SD
Sbjct: 1020 HMVQDKMHARARGPKAVLTRQPTQGRSREGGLRLGEMERDCLISYGASMLIMERLMISSD 1079
Query: 390 PYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLM 449
+ + VC CG +A + C C++ +S++ +PYA KLLFQEL SMN+ P+++
Sbjct: 1080 AFEVDVCRTCGRMAYCSW------CHFCQSSANVSKISMPYACKLLFQELTSMNVVPKMI 1133
Query: 450 V 450
+
Sbjct: 1134 L 1134
Score = 308 (113.5 bits), Expect = 2.3e-68, Sum P(2) = 2.3e-68
Identities = 74/219 (33%), Positives = 122/219 (55%)
Query: 55 GYNQE---DSVILNASAVERGYFRS--MEYLRFRELPAGINSIVAILCYTGYNQEDSVIL 109
GYNQ+ DS++ N +S +E F +LPAG N+ VA++ Y+GY+ ED++IL
Sbjct: 705 GYNQKNRIDSLMYNLVYPHAPMVKSKTIELTNFDKLPAGQNATVAVMSYSGYDIEDALIL 764
Query: 110 NASAVERGYFRSVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAI---YDKLDDDGI 166
N ++++RGY R + +++ K KR +Q F++ + N + +D LD DGI
Sbjct: 765 NKASIDRGYGRCLVYKNSK-CTVKRYANQT--FDRIMGPMKDALTNKVIFKHDVLDTDGI 821
Query: 167 IAPGLRVSGDDVVIGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNV 226
+APG +V ++I K + + + L+G + + + E +++VM++ N
Sbjct: 822 VAPGEQVQNKQIMINKEMPAVTSMNPLQGQSAQVPYTAVPISYKGPEPSYIERVMVSANA 881
Query: 227 DGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQE 265
+ KI +R RIP+IGDKF+SRHGQKG G+ QE
Sbjct: 882 EEDFLIKILLRQTRIPEIGDKFSSRHGQKGVTGLIVEQE 920
Score = 182 (69.1 bits), Expect = 4.3e-55, Sum P(2) = 4.3e-55
Identities = 34/79 (43%), Positives = 56/79 (70%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
MG+ N R+D+L + L YPH P+V ++++E F +LPAG N+ VA++ Y+GY+ ED
Sbjct: 701 MGMIGYNQKNRIDSLMYNLVYPHAPMVKSKTIELTNFDKLPAGQNATVAVMSYSGYDIED 760
Query: 61 SVILNASAVERGYFRSMEY 79
++ILN ++++RGY R + Y
Sbjct: 761 ALILNKASIDRGYGRCLVY 779
Score = 38 (18.4 bits), Expect = 6.0e-40, Sum P(2) = 6.0e-40
Identities = 7/30 (23%), Positives = 17/30 (56%)
Query: 65 NASAVERGYFRSMEYLRFRELPAGINSIVA 94
N V+ F ++++R ++ AG+ S ++
Sbjct: 398 NIPKVKAAQFDVVKHMRAAQITAGLESAIS 427
>GENEDB_PFALCIPARUM|PFL0330c [details] [associations]
symbol:PFL0330c "DNA-directed RNA polymerase III
subunit, putative" species:5833 "Plasmodium falciparum" [GO:0005666
"DNA-directed RNA polymerase III complex" evidence=ISS] [GO:0006383
"transcription from RNA polymerase III promoter" evidence=ISS]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 EMBL:AE014188 GO:GO:0006383
GO:GO:0005666 GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 HOGENOM:HOG000222962 KO:K03021 OMA:IRRIIMA
RefSeq:XP_001350475.1 ProteinModelPortal:Q8I5X9
EnsemblProtists:PFL0330c:mRNA GeneID:811119 KEGG:pfa:PFL0330c
EuPathDB:PlasmoDB:PF3D7_1206600 ProtClustDB:CLSZ2444941
Uniprot:Q8I5X9
Length = 1450
Score = 419 (152.6 bits), Expect = 3.4e-68, Sum P(3) = 3.4e-68
Identities = 83/180 (46%), Positives = 119/180 (66%)
Query: 271 GEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQRLKH 330
G I TPF ++I+ +L YG+ E++++G TG + +F+GP YYQ+LKH
Sbjct: 1280 GSIFSGTPF------EEIAEILFRYGFNCSSKELLYSGLTGEPLETYIFMGPIYYQKLKH 1333
Query: 331 MVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDP 390
MV DKIH+RARGP Q+L RQP EGR+++GGLR GEMERDC I++G + L ERL SD
Sbjct: 1334 MVQDKIHARARGPRQLLTRQPTEGRSKEGGLRLGEMERDCLIAYGVSNLLLERLMLSSDV 1393
Query: 391 YRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMV 450
+++C CG++ TF CK C +K + +++PYA KLLFQEL +MN+ P+++V
Sbjct: 1394 CNVYICEDCGMMGYDLYC--TF-CKKC-DKNIV--IQMPYACKLLFQELQTMNVFPKIIV 1447
Score = 194 (73.4 bits), Expect = 3.4e-68, Sum P(3) = 3.4e-68
Identities = 33/71 (46%), Positives = 55/71 (77%)
Query: 7 NFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNA 66
N VR DTL ++L YP KPLV ++++E++ F +LPAG N+IVA++ + GY+ ED++++N
Sbjct: 946 NQFVRCDTLLYLLVYPQKPLVKSKTIEFINFEKLPAGQNAIVAVMSFCGYDIEDAIVMNK 1005
Query: 67 SAVERGYFRSM 77
S+++RG+ R M
Sbjct: 1006 SSIDRGFGRCM 1016
Score = 150 (57.9 bits), Expect = 3.4e-68, Sum P(3) = 3.4e-68
Identities = 38/114 (33%), Positives = 58/114 (50%)
Query: 158 YDKLDDDGIIAPGLRVSGDDVVIGKTITLPENEDELEGTTKRFSKRDGSTFLRNS----- 212
Y LD DG+ + G + + + K P+N ++ K K D + F N
Sbjct: 1125 YHSLDMDGVASIGYLIKEGQLYVNKFS--PKN---IKDHVKDIGKVDINDFKINEIKYKS 1179
Query: 213 -ETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQE 265
+D+++ T N +G K KI +R R+P++GDKF+SRHGQKG G+ QE
Sbjct: 1180 VYPSYIDKIIFTENSEGLKLYKIIMRQTRLPELGDKFSSRHGQKGVVGLLVNQE 1233
Score = 132 (51.5 bits), Expect = 1.1e-61, Sum P(3) = 1.1e-61
Identities = 22/60 (36%), Positives = 44/60 (73%)
Query: 75 RSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFRSYKDAESKR 134
+++E++ F +LPAG N+IVA++ + GY+ ED++++N S+++RG+ R + R + E K+
Sbjct: 969 KTIEFINFEKLPAGQNAIVAVMSFCGYDIEDAIVMNKSSIDRGFGRCMSLRKHS-VELKK 1027
Score = 43 (20.2 bits), Expect = 3.0e-39, Sum P(2) = 3.0e-39
Identities = 17/73 (23%), Positives = 31/73 (42%)
Query: 153 MRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENEDELEGTTKRFSKRDGSTFLRNS 212
+ NAIY D + P + + GK+ LP++ LE T F S+ +
Sbjct: 825 LHNAIYISTDGGRLCRPLIIIEN-----GKSKLLPQHIKALENGTINFFDLLKSSVIEWI 879
Query: 213 ETGIVDQVMLTLN 225
+ + +++ LN
Sbjct: 880 DVNEQNNLLIALN 892
>UNIPROTKB|Q8I5X9 [details] [associations]
symbol:PFL0330c "DNA-directed RNA polymerase" species:36329
"Plasmodium falciparum 3D7" [GO:0005666 "DNA-directed RNA
polymerase III complex" evidence=ISS] [GO:0006383 "transcription
from RNA polymerase III promoter" evidence=ISS] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 EMBL:AE014188 GO:GO:0006383 GO:GO:0005666
GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000222962 KO:K03021 OMA:IRRIIMA RefSeq:XP_001350475.1
ProteinModelPortal:Q8I5X9 EnsemblProtists:PFL0330c:mRNA
GeneID:811119 KEGG:pfa:PFL0330c EuPathDB:PlasmoDB:PF3D7_1206600
ProtClustDB:CLSZ2444941 Uniprot:Q8I5X9
Length = 1450
Score = 419 (152.6 bits), Expect = 3.4e-68, Sum P(3) = 3.4e-68
Identities = 83/180 (46%), Positives = 119/180 (66%)
Query: 271 GEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQRLKH 330
G I TPF ++I+ +L YG+ E++++G TG + +F+GP YYQ+LKH
Sbjct: 1280 GSIFSGTPF------EEIAEILFRYGFNCSSKELLYSGLTGEPLETYIFMGPIYYQKLKH 1333
Query: 331 MVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDP 390
MV DKIH+RARGP Q+L RQP EGR+++GGLR GEMERDC I++G + L ERL SD
Sbjct: 1334 MVQDKIHARARGPRQLLTRQPTEGRSKEGGLRLGEMERDCLIAYGVSNLLLERLMLSSDV 1393
Query: 391 YRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMV 450
+++C CG++ TF CK C +K + +++PYA KLLFQEL +MN+ P+++V
Sbjct: 1394 CNVYICEDCGMMGYDLYC--TF-CKKC-DKNIV--IQMPYACKLLFQELQTMNVFPKIIV 1447
Score = 194 (73.4 bits), Expect = 3.4e-68, Sum P(3) = 3.4e-68
Identities = 33/71 (46%), Positives = 55/71 (77%)
Query: 7 NFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNA 66
N VR DTL ++L YP KPLV ++++E++ F +LPAG N+IVA++ + GY+ ED++++N
Sbjct: 946 NQFVRCDTLLYLLVYPQKPLVKSKTIEFINFEKLPAGQNAIVAVMSFCGYDIEDAIVMNK 1005
Query: 67 SAVERGYFRSM 77
S+++RG+ R M
Sbjct: 1006 SSIDRGFGRCM 1016
Score = 150 (57.9 bits), Expect = 3.4e-68, Sum P(3) = 3.4e-68
Identities = 38/114 (33%), Positives = 58/114 (50%)
Query: 158 YDKLDDDGIIAPGLRVSGDDVVIGKTITLPENEDELEGTTKRFSKRDGSTFLRNS----- 212
Y LD DG+ + G + + + K P+N ++ K K D + F N
Sbjct: 1125 YHSLDMDGVASIGYLIKEGQLYVNKFS--PKN---IKDHVKDIGKVDINDFKINEIKYKS 1179
Query: 213 -ETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQE 265
+D+++ T N +G K KI +R R+P++GDKF+SRHGQKG G+ QE
Sbjct: 1180 VYPSYIDKIIFTENSEGLKLYKIIMRQTRLPELGDKFSSRHGQKGVVGLLVNQE 1233
Score = 132 (51.5 bits), Expect = 1.1e-61, Sum P(3) = 1.1e-61
Identities = 22/60 (36%), Positives = 44/60 (73%)
Query: 75 RSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFRSYKDAESKR 134
+++E++ F +LPAG N+IVA++ + GY+ ED++++N S+++RG+ R + R + E K+
Sbjct: 969 KTIEFINFEKLPAGQNAIVAVMSFCGYDIEDAIVMNKSSIDRGFGRCMSLRKHS-VELKK 1027
Score = 43 (20.2 bits), Expect = 3.0e-39, Sum P(2) = 3.0e-39
Identities = 17/73 (23%), Positives = 31/73 (42%)
Query: 153 MRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENEDELEGTTKRFSKRDGSTFLRNS 212
+ NAIY D + P + + GK+ LP++ LE T F S+ +
Sbjct: 825 LHNAIYISTDGGRLCRPLIIIEN-----GKSKLLPQHIKALENGTINFFDLLKSSVIEWI 879
Query: 213 ETGIVDQVMLTLN 225
+ + +++ LN
Sbjct: 880 DVNEQNNLLIALN 892
>CGD|CAL0002357 [details] [associations]
symbol:orf19.5847 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0005666 "DNA-directed RNA polymerase
III complex" evidence=IEA] [GO:0042797 "tRNA transcription from RNA
polymerase III promoter" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 CGD:CAL0002357
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000222962 KO:K03021 EMBL:AACQ01000235 EMBL:AACQ01000236
RefSeq:XP_710802.1 RefSeq:XP_710813.1 STRING:Q59M52 GeneID:3647582
GeneID:3647593 KEGG:cal:CaO19.13269 KEGG:cal:CaO19.5847
Uniprot:Q59M52
Length = 1157
Score = 457 (165.9 bits), Expect = 5.3e-68, Sum P(3) = 5.3e-68
Identities = 91/178 (51%), Positives = 123/178 (69%)
Query: 271 GEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQRLKH 330
G + T F + ++ +S +L E G+ G +++++G TG + A +F GP YYQ+LKH
Sbjct: 981 GSLEYGTCFGGS-KLEDMSKILIEKGFSYSGKDMLYSGITGECLQAYIFFGPIYYQKLKH 1039
Query: 331 MVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDP 390
MV DK+H+RARGP +L RQP EGR+RDGGLR GEMERDC I++GA+Q L ERL SD
Sbjct: 1040 MVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMISSDA 1099
Query: 391 YRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRL 448
+ + VCN CGL M N++ C CK+ + ++ +PYAAKLLFQEL+SMNIAPRL
Sbjct: 1100 FEVDVCNKCGL-----MGYNSW-CTTCKSSENVIKMTIPYAAKLLFQELLSMNIAPRL 1151
Score = 253 (94.1 bits), Expect = 5.3e-68, Sum P(3) = 5.3e-68
Identities = 57/194 (29%), Positives = 101/194 (52%)
Query: 75 RSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFRSYKDAESKR 134
+++E + + +LPAG N+ VA++ Y+GY+ ED+++LN ++++RG+ R R + K+
Sbjct: 747 KTIELIEYDKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCQVVRK-NTVQLKK 805
Query: 135 IGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENEDELE 194
+ + R + L DG+ G R+ V K + + L
Sbjct: 806 YPNHTQDILAGMRVDENNKPIFQHQALGPDGLGEVGSRIFNGQVFANKCVPTNSGDSTLG 865
Query: 195 GTTKRF---SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASR 251
++ S R+ F + E +DQVM++++ + K+ +R R P++GDKF+SR
Sbjct: 866 AQQEQRAAESHREAPAFYKGPEPSYIDQVMMSVSDNDQALIKVLLRQTRRPELGDKFSSR 925
Query: 252 HGQKGTCGIQYRQE 265
HGQKG CGI +QE
Sbjct: 926 HGQKGVCGIIVQQE 939
Score = 169 (64.5 bits), Expect = 6.5e-57, Sum P(2) = 6.5e-57
Identities = 29/75 (38%), Positives = 54/75 (72%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
+G N R+DTL + + YP +P+V T+++E + + +LPAG N+ VA++ Y+GY+ ED
Sbjct: 718 IGAIAYNQFRRIDTLLYFMVYPQQPMVKTKTIELIEYDKLPAGQNATVAVMSYSGYDIED 777
Query: 61 SVILNASAVERGYFR 75
+++LN ++++RG+ R
Sbjct: 778 ALVLNKASLDRGFGR 792
Score = 45 (20.9 bits), Expect = 5.3e-68, Sum P(3) = 5.3e-68
Identities = 14/53 (26%), Positives = 24/53 (45%)
Query: 3 VYITNFH--VRMD--TLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAIL 51
+++ NF R++ T LYY K + T R + +L GI +I +
Sbjct: 281 LFVVNFEEAARLEVFTQQQALYYVGKRVKTIRRAGAPKLSQLQEGIEAIATTI 333
>UNIPROTKB|I3LGN1 [details] [associations]
symbol:LOC100737037 "DNA-directed RNA polymerase"
species:9823 "Sus scrofa" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
GeneTree:ENSGT00690000102214 EMBL:CU914657
Ensembl:ENSSSCT00000028672 OMA:MSYEGYN Uniprot:I3LGN1
Length = 425
Score = 431 (156.8 bits), Expect = 1.2e-67, Sum P(2) = 1.2e-67
Identities = 86/178 (48%), Positives = 111/178 (62%)
Query: 271 GEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQRLKH 330
G T F + V+ + L +GY G + + +G TG + A ++ GP YYQ+LKH
Sbjct: 248 GRFHYGTAFGGS-KVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKH 306
Query: 331 MVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDP 390
MV DK+H+RARGP +L RQP EGR+RDGGLR GEMERDC I +GA+ L ERL SD
Sbjct: 307 MVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDA 366
Query: 391 YRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRL 448
+ + VC CGL+ + C CK+ +S +R+PYA KLLFQEL SMNI PRL
Sbjct: 367 FEVDVCGQCGLLGYSGW------CHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRL 418
Score = 274 (101.5 bits), Expect = 1.2e-67, Sum P(2) = 1.2e-67
Identities = 64/196 (32%), Positives = 114/196 (58%)
Query: 75 RSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFRSYKDAESKR 134
+++E + F +LPAG N+ VA++ Y+GY+ ED+++LN ++++RG+ R + +++ K KR
Sbjct: 15 KTIELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAK-CTLKR 73
Query: 135 IGDQEEQFEKPNRQTCQGM-RNAIY--DKLDDDGIIAPGLRVSGDDVVIGKTITLPENED 191
+Q F+K R I+ + LD DGI +PG +V V++ K++ +
Sbjct: 74 YTNQT--FDKVMGPVLDAATRKPIWRHEILDADGICSPGEKVENKQVLVNKSMPTV-TQI 130
Query: 192 ELEGTT--KRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFA 249
LEG+ ++ +D + + +++VM++ N + K+ +R R P+IGDKF+
Sbjct: 131 PLEGSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFS 190
Query: 250 SRHGQKGTCGIQYRQE 265
SRHGQKG CG+ QE
Sbjct: 191 SRHGQKGVCGLIVPQE 206
Score = 165 (63.1 bits), Expect = 3.8e-56, Sum P(2) = 3.8e-56
Identities = 27/63 (42%), Positives = 49/63 (77%)
Query: 17 HVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRS 76
++L YP KP+V T+++E + F +LPAG N+ VA++ Y+GY+ ED+++LN ++++RG+ R
Sbjct: 2 YLLAYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRC 61
Query: 77 MEY 79
+ Y
Sbjct: 62 LVY 64
>TAIR|locus:2153323 [details] [associations]
symbol:NRPC2 "nuclear RNA polymerase C2" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=ISM]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0009560
"embryo sac egg cell differentiation" evidence=RCA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 EMBL:CP002688 GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03021 OMA:DMIMNPH IPI:IPI00530040 RefSeq:NP_199327.4
UniGene:At.9250 ProteinModelPortal:F4KD38 PRIDE:F4KD38
EnsemblPlants:AT5G45140.1 GeneID:834550 KEGG:ath:AT5G45140
Uniprot:F4KD38
Length = 1161
Score = 446 (162.1 bits), Expect = 1.4e-66, Sum P(3) = 1.4e-66
Identities = 81/167 (48%), Positives = 113/167 (67%)
Query: 282 AVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRAR 341
A V+ IS L E G+ G +++++G +G + A +F+GP YYQ+LKHMV DK+H+R
Sbjct: 990 ADKVETISATLVEKGFSYSGKDLLYSGISGEPVEAYIFMGPIYYQKLKHMVLDKMHARGS 1049
Query: 342 GPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNFCGL 401
GP ++ RQP EG++++GGLR GEMERDC I++GA+ + ERL SDP+ + VC CGL
Sbjct: 1050 GPRVMMTRQPTEGKSKNGGLRVGEMERDCLIAYGASMLIYERLMISSDPFEVQVCRACGL 1109
Query: 402 IAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRL 448
+ N + C CKN I+ ++LPYA KLLFQEL SMN+ PRL
Sbjct: 1110 LGYYNYKLKKAVCTTCKNGDNIATMKLPYACKLLFQELQSMNVVPRL 1156
Score = 258 (95.9 bits), Expect = 1.4e-66, Sum P(3) = 1.4e-66
Identities = 63/219 (28%), Positives = 111/219 (50%)
Query: 51 LCYTGYNQEDSVILNASAVERGYF--RSMEYLRFRELPAGINSIVAILCYTGYNQEDSVI 108
+ Y N+ D+++ +R R++E + + +L AG N+ VA++ ++GY+ ED+++
Sbjct: 719 IAYNQLNRMDTLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSFSGYDIEDAIV 778
Query: 109 LNASAVERGYFRSVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIA 168
+N S+++RG+ R + + K ++ P R + I LDDDG+
Sbjct: 779 MNKSSLDRGFGRCIVMKKIVAMSQKYDNCTADRILIPQRTGPDAEKMQI---LDDDGLAT 835
Query: 169 PGLRVSGDDVVIGKTITLPENEDELEGTTKRFSKRDGSTFLRN--SETGIVDQVMLTLNV 226
PG + +D+ I K + + + + R + + ET +VD+V L +
Sbjct: 836 PGEIIRPNDIYINKQVPV-DTVTKFTSALSDSQYRPAREYFKGPEGETQVVDRVALCSDK 894
Query: 227 DGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQE 265
G K +R R P++GDKF+SRHGQKG CGI +QE
Sbjct: 895 KGQLCIKYIIRHTRRPELGDKFSSRHGQKGVCGIIIQQE 933
Score = 172 (65.6 bits), Expect = 4.9e-56, Sum P(2) = 4.9e-56
Identities = 32/75 (42%), Positives = 55/75 (73%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
MG N RMDTL ++L YP +PL+TTR++E + + +L AG N+ VA++ ++GY+ ED
Sbjct: 716 MGNIAYNQLNRMDTLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSFSGYDIED 775
Query: 61 SVILNASAVERGYFR 75
++++N S+++RG+ R
Sbjct: 776 AIVMNKSSLDRGFGR 790
Score = 38 (18.4 bits), Expect = 1.4e-66, Sum P(3) = 1.4e-66
Identities = 10/48 (20%), Positives = 25/48 (52%)
Query: 4 YITNFHVRMDTLAHVLYYPHKPLVTTRSME-YLRFRELPAGINSIVAI 50
++ +F+ ++ H + + + +T YLRF+++ G SI+ +
Sbjct: 49 HLDSFNYFINVGIHKIVKANSRITSTVDPSIYLRFKKVRVGEPSIINV 96
Score = 37 (18.1 bits), Expect = 7.6e-42, Sum P(2) = 7.6e-42
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 79 YLRFRELPAGINSIVAI 95
YLRF+++ G SI+ +
Sbjct: 80 YLRFKKVRVGEPSIINV 96
>POMBASE|SPAC4G9.08c [details] [associations]
symbol:rpc2 "DNA-directed RNA polymerase III complex
subunit Rpc2" species:4896 "Schizosaccharomyces pombe" [GO:0003677
"DNA binding" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0005666 "DNA-directed RNA
polymerase III complex" evidence=NAS] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006383 "transcription from RNA polymerase III
promoter" evidence=NAS] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PomBase:SPAC4G9.08c PANTHER:PTHR20856 GO:GO:0005829 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0046872 GO:GO:0003677 GO:GO:0006383
GO:GO:0005666 GO:GO:0003899 eggNOG:COG0085 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 HOGENOM:HOG000222962
KO:K03021 OMA:DMIMNPH EMBL:DQ156226 PIR:T38867 RefSeq:NP_593690.1
ProteinModelPortal:Q10233 DIP:DIP-29536N STRING:Q10233
EnsemblFungi:SPAC4G9.08c.1 GeneID:2543393 KEGG:spo:SPAC4G9.08c
OrthoDB:EOG4K6KC8 NextBio:20804408 Uniprot:Q10233
Length = 1165
Score = 448 (162.8 bits), Expect = 1.4e-66, Sum P(2) = 1.4e-66
Identities = 88/179 (49%), Positives = 118/179 (65%)
Query: 270 KGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQRLK 329
+G + T F V+ S +L E+GY G +++ +G TG + A +F+GP YYQ+LK
Sbjct: 986 RGTLEYGTCFG-GTKVEDASRILVEHGYNYSGKDMLTSGITGETLEAYIFMGPIYYQKLK 1044
Query: 330 HMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSD 389
HMV DK+H+RARGP +L RQP EGR+RDGGLR GEMERDC I++GA+Q L ERL SD
Sbjct: 1045 HMVMDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIAYGASQLLLERLMISSD 1104
Query: 390 PYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRL 448
+ VC CGL+ C C++ ++ ++ +PYAAKLLFQEL+SMNI PRL
Sbjct: 1105 ACDVDVCGQCGLLGYKGW------CNSCQSTREVVKMTIPYAAKLLFQELLSMNIVPRL 1157
Score = 270 (100.1 bits), Expect = 1.4e-66, Sum P(2) = 1.4e-66
Identities = 61/194 (31%), Positives = 103/194 (53%)
Query: 75 RSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFRSYKDAESKR 134
+++E + + +LPAG N+ VAI+ Y+GY+ ED+++LN S+++RG+ R F + K
Sbjct: 752 KTIELIGYDKLPAGQNATVAIMSYSGYDIEDALVLNKSSIDRGFGRCQVFHKHSVIVRKY 811
Query: 135 IGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENEDELE 194
++ P R G + ++DDG+ G RV + + K ++ +
Sbjct: 812 PNGTHDRIGDPQRDPETGEVVWKHGVVEDDGLAGVGCRVQPGQIYVNKQTPTNALDNSIT 871
Query: 195 -GTTKRFSKRDGSTFL--RNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASR 251
G T+ +T + + E G +D+VMLT K+ +R R P++GDKF+SR
Sbjct: 872 LGHTQTVESGYKATPMTYKAPEPGYIDKVMLTTTDSDQTLIKVLMRQTRRPELGDKFSSR 931
Query: 252 HGQKGTCGIQYRQE 265
HGQKG CG+ +QE
Sbjct: 932 HGQKGVCGVIVQQE 945
Score = 174 (66.3 bits), Expect = 1.9e-56, Sum P(2) = 1.9e-56
Identities = 31/75 (41%), Positives = 55/75 (73%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
+G N R+DTL +++ YP +P+V T+++E + + +LPAG N+ VAI+ Y+GY+ ED
Sbjct: 723 IGAIAYNQLQRIDTLLYLMVYPQQPMVKTKTIELIGYDKLPAGQNATVAIMSYSGYDIED 782
Query: 61 SVILNASAVERGYFR 75
+++LN S+++RG+ R
Sbjct: 783 ALVLNKSSIDRGFGR 797
>UNIPROTKB|E1BRJ4 [details] [associations]
symbol:POLR3B "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0032728 "positive
regulation of interferon-beta production" evidence=IEA] [GO:0045089
"positive regulation of innate immune response" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0045089
GO:GO:0003899 GO:GO:0032728 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03021 GeneTree:ENSGT00690000102214
OMA:DMIMNPH CTD:55703 EMBL:AADN02006293 EMBL:AADN02006294
EMBL:AADN02006295 IPI:IPI00580707 RefSeq:XP_416307.3
UniGene:Gga.54760 Ensembl:ENSGALT00000020649 GeneID:418071
KEGG:gga:418071 Uniprot:E1BRJ4
Length = 1132
Score = 430 (156.4 bits), Expect = 2.6e-65, Sum P(2) = 2.6e-65
Identities = 86/178 (48%), Positives = 111/178 (62%)
Query: 271 GEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQRLKH 330
G T F + V+ + L +GY G + + +G TG + A ++ GP YYQ+LKH
Sbjct: 955 GRFHYGTAFGGS-KVKDVCEDLIRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKH 1013
Query: 331 MVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDP 390
MV DK+H+RARGP +L RQP EGR+RDGGLR GEMERDC I +GA+ L ERL SD
Sbjct: 1014 MVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDA 1073
Query: 391 YRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRL 448
+ + VC CGL+ + C CK+ +S +R+PYA KLLFQEL SMNI PRL
Sbjct: 1074 FEVDVCGQCGLLGYSGW------CHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRL 1125
Score = 276 (102.2 bits), Expect = 2.6e-65, Sum P(2) = 2.6e-65
Identities = 69/221 (31%), Positives = 126/221 (57%)
Query: 55 GYNQE---DSVILNASAVERGYFRS--MEYLRFRELPAGINSIVAILCYTGYNQEDSVIL 109
GYNQ D+++ + ++ ++ +E + F +LPAG N+ VA++ Y+GY+ ED+++L
Sbjct: 697 GYNQRNRIDTLMYLLAYPQKPMVKTKTIELIDFEKLPAGQNATVAVMSYSGYDIEDALVL 756
Query: 110 NASAVERGYFRSVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGM-RNAIY--DKLDDDGI 166
N ++++RG+ R + +++ K KR +Q F+K R I+ + LD DGI
Sbjct: 757 NKASLDRGFGRCLVYKNAK-CTLKRYTNQT--FDKVMGPMLDAATRKPIWRHEILDADGI 813
Query: 167 IAPGLRVSGDDVVIGKTITLPENEDELEGTT--KRFSKRDGSTFLRNSETGIVDQVMLTL 224
+PG +V V++ K++ + LEG++ ++ +D + + +++VM++
Sbjct: 814 CSPGEKVENKQVLVNKSMPTV-TQTPLEGSSVPQQPQYKDVPVTYKGATDSYIEKVMISS 872
Query: 225 NVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQE 265
N + K+ +R R P+IGDKF+SRHGQKG CG+ QE
Sbjct: 873 NAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQE 913
Score = 187 (70.9 bits), Expect = 6.0e-56, Sum P(2) = 6.0e-56
Identities = 34/79 (43%), Positives = 57/79 (72%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
MG N R+DTL ++L YP KP+V T+++E + F +LPAG N+ VA++ Y+GY+ ED
Sbjct: 693 MGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIDFEKLPAGQNATVAVMSYSGYDIED 752
Query: 61 SVILNASAVERGYFRSMEY 79
+++LN ++++RG+ R + Y
Sbjct: 753 ALVLNKASLDRGFGRCLVY 771
Score = 41 (19.5 bits), Expect = 1.4e-40, Sum P(2) = 1.4e-40
Identities = 23/104 (22%), Positives = 45/104 (43%)
Query: 3 VYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLR--FRELPAGINSIVAILCYTGYNQED 60
VYI++ R+ +++ KP VT + ME L +R ++ ++ Y N+E+
Sbjct: 582 VYISSDGGRL-CRPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHE--GLVEYLDVNEEN 638
Query: 61 SVILNASAVERGYFRSMEYLRFRELPAGINSIVA-ILCYTGYNQ 103
N + E + +L P + + A ++ Y +NQ
Sbjct: 639 DC--NIALYEHTINKDTTHLEIE--PFTLLGVCAGLIPYPHHNQ 678
>ZFIN|ZDB-GENE-030131-2887 [details] [associations]
symbol:polr3b "polymerase (RNA) III (DNA directed)
polypeptide B" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0031017 "exocrine pancreas development" evidence=IMP]
[GO:0048565 "digestive tract development" evidence=IMP] [GO:0009304
"tRNA transcription" evidence=IMP] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 ZFIN:ZDB-GENE-030131-2887
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
GeneTree:ENSGT00690000102214 EMBL:BX465207 IPI:IPI00505191
Ensembl:ENSDART00000091466 ArrayExpress:F1QQA2 Bgee:F1QQA2
Uniprot:F1QQA2
Length = 1129
Score = 438 (159.2 bits), Expect = 3.1e-65, Sum P(2) = 3.1e-65
Identities = 87/178 (48%), Positives = 112/178 (62%)
Query: 271 GEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQRLKH 330
G T F + V+ + L YGY +G + + +G TG + A ++ GP YYQ+LKH
Sbjct: 952 GRFHYGTAFGGS-KVKDVCEDLIRYGYNYQGKDYVTSGITGEPLEAYIYFGPVYYQKLKH 1010
Query: 331 MVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDP 390
MV DK+H+RARGP +L RQP EGR+RDGGLR GEMERDC I +GA+ L ERL SD
Sbjct: 1011 MVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDA 1070
Query: 391 YRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRL 448
+ + VC CGL+ + C CK+ +S +R+PYA KLLFQEL SMNI PRL
Sbjct: 1071 FEVDVCGQCGLLGYSGW------CHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRL 1122
Score = 267 (99.0 bits), Expect = 3.1e-65, Sum P(2) = 3.1e-65
Identities = 70/222 (31%), Positives = 124/222 (55%)
Query: 55 GYNQE---DSVILNASAVERGYFRS--MEYLRFRELPAGINSIVAILCYTGYNQEDSVIL 109
GYNQ D+++ + +R ++ +E + F +LPAG N+ VA++ Y+GY+ ED+++L
Sbjct: 693 GYNQRNRIDTLMYLLAYPQRPMVKTKTIELIDFEKLPAGQNATVAVMSYSGYDIEDALVL 752
Query: 110 NASAVERGYFRSVFFRSYKDAESKRIGDQEEQFEKPNRQTCQG-MRNAIYDK--LDDDGI 166
N ++++RG+ R + +++ K +R +Q F+K R I+ LD DGI
Sbjct: 753 NKASLDRGFGRCLVYKNAK-CTLRRYTNQT--FDKVMGPMLDAETRKPIWRHSILDADGI 809
Query: 167 IAPGL-RVSGDDVVIGKTITLPENEDELEGTTK--RFSKRDGSTFLRNSETGIVDQVMLT 223
+PG +V V++ K++ + LEG+ + + R+ + + +++VM++
Sbjct: 810 CSPGSEKVENKQVLVNKSMPTV-TQTPLEGSAQPGQPQYREVPVSYKGATDSYIEKVMIS 868
Query: 224 LNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQE 265
N + KI +R R P+IGDKF+SRHGQKG CG+ QE
Sbjct: 869 SNAEDAFLVKILLRQTRRPEIGDKFSSRHGQKGVCGLIVPQE 910
Score = 184 (69.8 bits), Expect = 1.7e-56, Sum P(2) = 1.7e-56
Identities = 33/79 (41%), Positives = 57/79 (72%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
MG N R+DTL ++L YP +P+V T+++E + F +LPAG N+ VA++ Y+GY+ ED
Sbjct: 689 MGTIGYNQRNRIDTLMYLLAYPQRPMVKTKTIELIDFEKLPAGQNATVAVMSYSGYDIED 748
Query: 61 SVILNASAVERGYFRSMEY 79
+++LN ++++RG+ R + Y
Sbjct: 749 ALVLNKASLDRGFGRCLVY 767
>UNIPROTKB|E1BPX6 [details] [associations]
symbol:POLR3B "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045089 "positive regulation of innate immune response"
evidence=IEA] [GO:0032728 "positive regulation of interferon-beta
production" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0045089
GO:GO:0003899 GO:GO:0032728 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03021 GeneTree:ENSGT00690000102214
OMA:DMIMNPH CTD:55703 EMBL:DAAA02013740 EMBL:DAAA02013741
EMBL:DAAA02013742 IPI:IPI00924128 RefSeq:NP_001179718.1
UniGene:Bt.42818 Ensembl:ENSBTAT00000038043 GeneID:540839
KEGG:bta:540839 NextBio:20878865 ArrayExpress:E1BPX6 Uniprot:E1BPX6
Length = 1133
Score = 431 (156.8 bits), Expect = 3.3e-65, Sum P(2) = 3.3e-65
Identities = 86/178 (48%), Positives = 111/178 (62%)
Query: 271 GEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQRLKH 330
G T F + V+ + L +GY G + + +G TG + A ++ GP YYQ+LKH
Sbjct: 956 GRFHYGTAFGGS-KVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKH 1014
Query: 331 MVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDP 390
MV DK+H+RARGP +L RQP EGR+RDGGLR GEMERDC I +GA+ L ERL SD
Sbjct: 1015 MVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDA 1074
Query: 391 YRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRL 448
+ + VC CGL+ + C CK+ +S +R+PYA KLLFQEL SMNI PRL
Sbjct: 1075 FEVDVCGQCGLLGYSGW------CHFCKSSCHVSSLRIPYACKLLFQELQSMNIIPRL 1126
Score = 274 (101.5 bits), Expect = 3.3e-65, Sum P(2) = 3.3e-65
Identities = 69/221 (31%), Positives = 125/221 (56%)
Query: 55 GYNQE---DSVILNASAVERGYFRS--MEYLRFRELPAGINSIVAILCYTGYNQEDSVIL 109
GYNQ D+++ + ++ ++ +E + F +LPAG N+ VA++ Y+GY+ ED+++L
Sbjct: 698 GYNQRNRIDTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDALVL 757
Query: 110 NASAVERGYFRSVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGM-RNAIY--DKLDDDGI 166
N ++++RG+ R + +++ K KR +Q F+K R I+ + LD DGI
Sbjct: 758 NKASLDRGFGRCLVYKNAK-CTLKRYTNQT--FDKVMGPMLDAATRKPIWRHEILDADGI 814
Query: 167 IAPGLRVSGDDVVIGKTITLPENEDELEGTT--KRFSKRDGSTFLRNSETGIVDQVMLTL 224
+PG +V V++ K++ + LEG+ ++ +D + + +++VM++
Sbjct: 815 CSPGEKVENKQVLVNKSMPTV-TQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMISS 873
Query: 225 NVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQE 265
N + K+ +R R P+IGDKF+SRHGQKG CG+ QE
Sbjct: 874 NAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQE 914
Score = 189 (71.6 bits), Expect = 2.9e-56, Sum P(2) = 2.9e-56
Identities = 34/79 (43%), Positives = 57/79 (72%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
MG N R+DTL ++L YP KP+V T+++E + F +LPAG N+ VA++ Y+GY+ ED
Sbjct: 694 MGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIED 753
Query: 61 SVILNASAVERGYFRSMEY 79
+++LN ++++RG+ R + Y
Sbjct: 754 ALVLNKASLDRGFGRCLVY 772
Score = 42 (19.8 bits), Expect = 8.3e-41, Sum P(2) = 8.3e-41
Identities = 23/104 (22%), Positives = 46/104 (44%)
Query: 3 VYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLR--FRELPAGINSIVAILCYTGYNQED 60
VYI++ R+ +++ KP VT + ME L +R ++ +++ Y N+E+
Sbjct: 583 VYISSDGGRL-CRPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHE--SLVEYLDVNEEN 639
Query: 61 SVILNASAVERGYFRSMEYLRFRELPAGINSIVA-ILCYTGYNQ 103
N + E + +L P + + A ++ Y +NQ
Sbjct: 640 DC--NIALYEHTINKDTTHLEIE--PFTLLGVCAGLIPYPHHNQ 679
>UNIPROTKB|E2RHZ2 [details] [associations]
symbol:POLR3B "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0045089 "positive regulation of innate
immune response" evidence=IEA] [GO:0032728 "positive regulation of
interferon-beta production" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0032549 "ribonucleoside
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0045089
GO:GO:0003899 GO:GO:0032728 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03021 GeneTree:ENSGT00690000102214
OMA:DMIMNPH CTD:55703 EMBL:AAEX03007377 RefSeq:XP_531760.2
Ensembl:ENSCAFT00000002941 GeneID:474531 KEGG:cfa:474531
NextBio:20850526 Uniprot:E2RHZ2
Length = 1133
Score = 431 (156.8 bits), Expect = 3.3e-65, Sum P(2) = 3.3e-65
Identities = 86/178 (48%), Positives = 111/178 (62%)
Query: 271 GEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQRLKH 330
G T F + V+ + L +GY G + + +G TG + A ++ GP YYQ+LKH
Sbjct: 956 GRFHYGTAFGGS-KVKDVCEDLVRHGYNYLGKDFVTSGITGEPLEAYIYFGPVYYQKLKH 1014
Query: 331 MVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDP 390
MV DK+H+RARGP +L RQP EGR+RDGGLR GEMERDC I +GA+ L ERL SD
Sbjct: 1015 MVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDA 1074
Query: 391 YRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRL 448
+ + VC CGL+ + C CK+ +S +R+PYA KLLFQEL SMNI PRL
Sbjct: 1075 FEVDVCGQCGLLGYSGW------CHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRL 1126
Score = 274 (101.5 bits), Expect = 3.3e-65, Sum P(2) = 3.3e-65
Identities = 69/221 (31%), Positives = 125/221 (56%)
Query: 55 GYNQE---DSVILNASAVERGYFRS--MEYLRFRELPAGINSIVAILCYTGYNQEDSVIL 109
GYNQ D+++ + ++ ++ +E + F +LPAG N+ VA++ Y+GY+ ED+++L
Sbjct: 698 GYNQRNRIDTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDALVL 757
Query: 110 NASAVERGYFRSVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGM-RNAIY--DKLDDDGI 166
N ++++RG+ R + +++ K KR +Q F+K R I+ + LD DGI
Sbjct: 758 NKASLDRGFGRCLVYKNAK-CTLKRYTNQT--FDKVMGPMLDAATRKPIWRHEILDADGI 814
Query: 167 IAPGLRVSGDDVVIGKTITLPENEDELEGTT--KRFSKRDGSTFLRNSETGIVDQVMLTL 224
+PG +V V++ K++ + LEG+ ++ +D + + +++VM++
Sbjct: 815 CSPGEKVENKQVLVNKSMPTV-TQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMISS 873
Query: 225 NVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQE 265
N + K+ +R R P+IGDKF+SRHGQKG CG+ QE
Sbjct: 874 NAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQE 914
Score = 189 (71.6 bits), Expect = 2.9e-56, Sum P(2) = 2.9e-56
Identities = 34/79 (43%), Positives = 57/79 (72%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
MG N R+DTL ++L YP KP+V T+++E + F +LPAG N+ VA++ Y+GY+ ED
Sbjct: 694 MGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIED 753
Query: 61 SVILNASAVERGYFRSMEY 79
+++LN ++++RG+ R + Y
Sbjct: 754 ALVLNKASLDRGFGRCLVY 772
Score = 42 (19.8 bits), Expect = 8.3e-41, Sum P(2) = 8.3e-41
Identities = 23/104 (22%), Positives = 46/104 (44%)
Query: 3 VYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLR--FRELPAGINSIVAILCYTGYNQED 60
VYI++ R+ +++ KP VT + ME L +R ++ +++ Y N+E+
Sbjct: 583 VYISSDGGRL-CRPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHE--SLVEYLDVNEEN 639
Query: 61 SVILNASAVERGYFRSMEYLRFRELPAGINSIVA-ILCYTGYNQ 103
N + E + +L P + + A ++ Y +NQ
Sbjct: 640 DC--NIALYEHTINKDTTHLEIE--PFTLLGVCAGLIPYPHHNQ 679
>UNIPROTKB|Q9NW08 [details] [associations]
symbol:POLR3B "DNA-directed RNA polymerase III subunit
RPC2" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0045087 "innate immune response" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0051607 "defense response to
virus" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0045089 "positive regulation of innate
immune response" evidence=IMP] [GO:0032728 "positive regulation of
interferon-beta production" evidence=IMP] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006383 "transcription from RNA polymerase III
promoter" evidence=TAS] [GO:0006385 "transcription elongation from
RNA polymerase III promoter" evidence=TAS] [GO:0006386 "termination
of RNA polymerase III transcription" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] Reactome:REACT_71
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0005654 GO:GO:0046872 GO:GO:0003677
GO:GO:0045087 EMBL:CH471054 GO:GO:0006351 GO:GO:0051607
GO:GO:0045089 Reactome:REACT_1788 GO:GO:0003899 GO:GO:0032728
GO:GO:0006386 GO:GO:0006385 EMBL:AC009721 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000222962 HOVERGEN:HBG017744 Orphanet:88637 KO:K03021
OMA:DMIMNPH EMBL:AY092084 EMBL:AK001161 EMBL:AK001250 EMBL:AK122713
EMBL:AK291635 EMBL:AC078992 EMBL:AC080012 EMBL:BC046238
IPI:IPI00301346 IPI:IPI00930490 RefSeq:NP_001154180.1
RefSeq:NP_060552.4 UniGene:Hs.610795 UniGene:Hs.62696
ProteinModelPortal:Q9NW08 IntAct:Q9NW08 STRING:Q9NW08
PhosphoSite:Q9NW08 DMDM:29428029 PaxDb:Q9NW08 PRIDE:Q9NW08
Ensembl:ENST00000228347 Ensembl:ENST00000539066 GeneID:55703
KEGG:hsa:55703 UCSC:uc001tlp.3 CTD:55703 GeneCards:GC12P106751
H-InvDB:HIX0037055 HGNC:HGNC:30348 HPA:HPA036466 MIM:614366
MIM:614381 neXtProt:NX_Q9NW08 PharmGKB:PA134867680
InParanoid:Q9NW08 OrthoDB:EOG49ZXND PhylomeDB:Q9NW08
GenomeRNAi:55703 NextBio:60549 ArrayExpress:Q9NW08 Bgee:Q9NW08
CleanEx:HS_POLR3B Genevestigator:Q9NW08 GermOnline:ENSG00000013503
Uniprot:Q9NW08
Length = 1133
Score = 431 (156.8 bits), Expect = 3.3e-65, Sum P(2) = 3.3e-65
Identities = 86/178 (48%), Positives = 111/178 (62%)
Query: 271 GEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQRLKH 330
G T F + V+ + L +GY G + + +G TG + A ++ GP YYQ+LKH
Sbjct: 956 GRFHYGTAFGGS-KVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKH 1014
Query: 331 MVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDP 390
MV DK+H+RARGP +L RQP EGR+RDGGLR GEMERDC I +GA+ L ERL SD
Sbjct: 1015 MVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDA 1074
Query: 391 YRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRL 448
+ + VC CGL+ + C CK+ +S +R+PYA KLLFQEL SMNI PRL
Sbjct: 1075 FEVDVCGQCGLLGYSGW------CHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRL 1126
Score = 274 (101.5 bits), Expect = 3.3e-65, Sum P(2) = 3.3e-65
Identities = 69/221 (31%), Positives = 125/221 (56%)
Query: 55 GYNQE---DSVILNASAVERGYFRS--MEYLRFRELPAGINSIVAILCYTGYNQEDSVIL 109
GYNQ D+++ + ++ ++ +E + F +LPAG N+ VA++ Y+GY+ ED+++L
Sbjct: 698 GYNQRNRIDTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDALVL 757
Query: 110 NASAVERGYFRSVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGM-RNAIY--DKLDDDGI 166
N ++++RG+ R + +++ K KR +Q F+K R I+ + LD DGI
Sbjct: 758 NKASLDRGFGRCLVYKNAK-CTLKRYTNQT--FDKVMGPMLDAATRKPIWRHEILDADGI 814
Query: 167 IAPGLRVSGDDVVIGKTITLPENEDELEGTT--KRFSKRDGSTFLRNSETGIVDQVMLTL 224
+PG +V V++ K++ + LEG+ ++ +D + + +++VM++
Sbjct: 815 CSPGEKVENKQVLVNKSMPTV-TQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMISS 873
Query: 225 NVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQE 265
N + K+ +R R P+IGDKF+SRHGQKG CG+ QE
Sbjct: 874 NAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQE 914
Score = 189 (71.6 bits), Expect = 2.9e-56, Sum P(2) = 2.9e-56
Identities = 34/79 (43%), Positives = 57/79 (72%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
MG N R+DTL ++L YP KP+V T+++E + F +LPAG N+ VA++ Y+GY+ ED
Sbjct: 694 MGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIED 753
Query: 61 SVILNASAVERGYFRSMEY 79
+++LN ++++RG+ R + Y
Sbjct: 754 ALVLNKASLDRGFGRCLVY 772
Score = 42 (19.8 bits), Expect = 8.3e-41, Sum P(2) = 8.3e-41
Identities = 23/104 (22%), Positives = 46/104 (44%)
Query: 3 VYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLR--FRELPAGINSIVAILCYTGYNQED 60
VYI++ R+ +++ KP VT + ME L +R ++ +++ Y N+E+
Sbjct: 583 VYISSDGGRL-CRPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHE--SLVEYLDVNEEN 639
Query: 61 SVILNASAVERGYFRSMEYLRFRELPAGINSIVA-ILCYTGYNQ 103
N + E + +L P + + A ++ Y +NQ
Sbjct: 640 DC--NIALYEHTINKDTTHLEIE--PFTLLGVCAGLIPYPHHNQ 679
>SGD|S000005733 [details] [associations]
symbol:RET1 "Second-largest subunit of RNA polymerase III"
species:4932 "Saccharomyces cerevisiae" [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA;IDA] [GO:0042797 "tRNA
transcription from RNA polymerase III promoter" evidence=IGI;IDA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0032549 "ribonucleoside
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005666 "DNA-directed RNA polymerase III complex"
evidence=IDA] [GO:0005634 "nucleus" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 SGD:S000005733 PANTHER:PTHR20856 EMBL:BK006948
GO:GO:0046872 GO:GO:0003677 GO:GO:0005666 GO:GO:0003899
Reactome:REACT_83470 EMBL:M38723 eggNOG:COG0085 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 Reactome:REACT_87991
GO:GO:0042797 HOGENOM:HOG000222962 KO:K03021
GeneTree:ENSGT00690000102214 OMA:DMIMNPH OrthoDB:EOG4K6KC8
EMBL:Z75115 PIR:S67099 RefSeq:NP_014850.1 ProteinModelPortal:P22276
DIP:DIP-997N IntAct:P22276 MINT:MINT-644049 STRING:P22276
PaxDb:P22276 PeptideAtlas:P22276 EnsemblFungi:YOR207C GeneID:854382
KEGG:sce:YOR207C CYGD:YOR207c NextBio:976523 Genevestigator:P22276
GermOnline:YOR207C Uniprot:P22276
Length = 1149
Score = 448 (162.8 bits), Expect = 5.2e-65, Sum P(2) = 5.2e-65
Identities = 88/178 (49%), Positives = 121/178 (67%)
Query: 271 GEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQRLKH 330
G + T F + ++ +S +L + G+ G +++++G TG + A +F GP YYQ+LKH
Sbjct: 971 GTLEYGTCFGGS-KLEDMSKILVDQGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKH 1029
Query: 331 MVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDP 390
MV DK+H+RARGP +L RQP EGR+RDGGLR GEMERDC I++GA+Q L ERL SD
Sbjct: 1030 MVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLERLMISSDA 1089
Query: 391 YRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRL 448
+ + VC+ CGL+ + C CK+ I ++ +PYAAKLLFQEL+SMNIAPRL
Sbjct: 1090 FEVDVCDKCGLMGYSGW------CTTCKSAENIIKMTIPYAAKLLFQELLSMNIAPRL 1141
Score = 255 (94.8 bits), Expect = 5.2e-65, Sum P(2) = 5.2e-65
Identities = 60/194 (30%), Positives = 102/194 (52%)
Query: 75 RSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFRSYKDAESKR 134
+++E + + +LPAG N+ VA++ Y+GY+ ED+++LN S+++RG+ R R KR
Sbjct: 739 KTIELIDYDKLPAGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCETRRKTTTV-LKR 797
Query: 135 IGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENEDELE 194
+ + R G + L DG+ G++V + I K++ P N +
Sbjct: 798 YANHTQDIIGGMRVDENGDPIWQHQSLGPDGLGEVGMKVQSGQIYINKSV--PTNSADAP 855
Query: 195 GTTK---RFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASR 251
+ R+ R E +DQVM++++ + K+ +R R P++GDKF+SR
Sbjct: 856 NPNNVNVQTQYREAPVIYRGPEPSHIDQVMMSVSDNDQALIKVLLRQNRRPELGDKFSSR 915
Query: 252 HGQKGTCGIQYRQE 265
HGQKG CGI +QE
Sbjct: 916 HGQKGVCGIIVKQE 929
Score = 174 (66.3 bits), Expect = 1.7e-56, Sum P(2) = 1.7e-56
Identities = 30/75 (40%), Positives = 55/75 (73%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
+G N R+DTL +++ YP +P+V T+++E + + +LPAG N+ VA++ Y+GY+ ED
Sbjct: 710 IGAIAYNQFKRIDTLLYLMTYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDIED 769
Query: 61 SVILNASAVERGYFR 75
+++LN S+++RG+ R
Sbjct: 770 ALVLNKSSIDRGFGR 784
>MGI|MGI:1917678 [details] [associations]
symbol:Polr3b "polymerase (RNA) III (DNA directed)
polypeptide B" species:10090 "Mus musculus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0032728 "positive
regulation of interferon-beta production" evidence=ISO] [GO:0045087
"innate immune response" evidence=IEA] [GO:0045089 "positive
regulation of innate immune response" evidence=ISO] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0051607 "defense response to
virus" evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 MGI:MGI:1917678 PANTHER:PTHR20856 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0045087 GO:GO:0006351
GO:GO:0051607 GO:GO:0045089 GO:GO:0003899 GO:GO:0032728
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000222962 HOVERGEN:HBG017744 KO:K03021
GeneTree:ENSGT00690000102214 OMA:DMIMNPH CTD:55703
OrthoDB:EOG49ZXND EMBL:BC044796 EMBL:BC068143 EMBL:AK039366
IPI:IPI00410871 RefSeq:NP_081699.1 UniGene:Mm.335007
ProteinModelPortal:P59470 STRING:P59470 PhosphoSite:P59470
PaxDb:P59470 PRIDE:P59470 Ensembl:ENSMUST00000077175 GeneID:70428
KEGG:mmu:70428 UCSC:uc007gku.1 InParanoid:P59470 NextBio:331603
Bgee:P59470 CleanEx:MM_POLR3B Genevestigator:P59470
GermOnline:ENSMUSG00000034453 Uniprot:P59470
Length = 1133
Score = 431 (156.8 bits), Expect = 5.3e-65, Sum P(2) = 5.3e-65
Identities = 86/178 (48%), Positives = 111/178 (62%)
Query: 271 GEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQRLKH 330
G T F + V+ + L +GY G + + +G TG + A ++ GP YYQ+LKH
Sbjct: 956 GRFHYGTAFGGS-KVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKH 1014
Query: 331 MVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDP 390
MV DK+H+RARGP +L RQP EGR+RDGGLR GEMERDC I +GA+ L ERL SD
Sbjct: 1015 MVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDA 1074
Query: 391 YRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRL 448
+ + VC CGL+ + C CK+ +S +R+PYA KLLFQEL SMNI PRL
Sbjct: 1075 FEVDVCGQCGLLGYSGW------CHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRL 1126
Score = 272 (100.8 bits), Expect = 5.3e-65, Sum P(2) = 5.3e-65
Identities = 69/221 (31%), Positives = 125/221 (56%)
Query: 55 GYNQE---DSVILNASAVERGYFRS--MEYLRFRELPAGINSIVAILCYTGYNQEDSVIL 109
GYNQ D+++ + ++ ++ +E + F +LPAG N+ VA++ Y+GY+ ED+++L
Sbjct: 698 GYNQRNRIDTLMYLLAYPQKPMVKTKTIELIDFEKLPAGQNATVAVMSYSGYDIEDALVL 757
Query: 110 NASAVERGYFRSVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGM-RNAIY--DKLDDDGI 166
N ++++RG+ R + +++ K KR +Q F+K R I+ + LD DGI
Sbjct: 758 NKASLDRGFGRCLVYKNAK-CTLKRYTNQT--FDKVMGPMLDAATRKPIWRHEILDADGI 814
Query: 167 IAPGLRVSGDDVVIGKTITLPENEDELEGTT--KRFSKRDGSTFLRNSETGIVDQVMLTL 224
+PG +V V++ K++ + LEG+ ++ +D + + +++VM++
Sbjct: 815 CSPGEKVENKQVLVNKSMPTV-TQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMISS 873
Query: 225 NVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQE 265
N + K+ +R R P+IGDKF+SRHGQKG CG+ QE
Sbjct: 874 NAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQE 914
Score = 187 (70.9 bits), Expect = 4.7e-56, Sum P(2) = 4.7e-56
Identities = 34/79 (43%), Positives = 57/79 (72%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
MG N R+DTL ++L YP KP+V T+++E + F +LPAG N+ VA++ Y+GY+ ED
Sbjct: 694 MGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIDFEKLPAGQNATVAVMSYSGYDIED 753
Query: 61 SVILNASAVERGYFRSMEY 79
+++LN ++++RG+ R + Y
Sbjct: 754 ALVLNKASLDRGFGRCLVY 772
Score = 42 (19.8 bits), Expect = 8.3e-41, Sum P(2) = 8.3e-41
Identities = 23/104 (22%), Positives = 46/104 (44%)
Query: 3 VYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLR--FRELPAGINSIVAILCYTGYNQED 60
VYI++ R+ +++ KP VT + ME L +R ++ +++ Y N+E+
Sbjct: 583 VYISSDGGRL-CRPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHE--SLVEYLDVNEEN 639
Query: 61 SVILNASAVERGYFRSMEYLRFRELPAGINSIVA-ILCYTGYNQ 103
N + E + +L P + + A ++ Y +NQ
Sbjct: 640 DC--NIALYEHTINKDTTHLEIE--PFTLLGVCAGLIPYPHHNQ 679
>RGD|1565311 [details] [associations]
symbol:Polr3b "polymerase (RNA) III (DNA directed) polypeptide
B" species:10116 "Rattus norvegicus" [GO:0003674
"molecular_function" evidence=ND] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0032728 "positive
regulation of interferon-beta production" evidence=IEA;ISO]
[GO:0045089 "positive regulation of innate immune response"
evidence=IEA;ISO] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 RGD:1565311 PANTHER:PTHR20856 GO:GO:0003677
GO:GO:0006351 GO:GO:0045089 GO:GO:0003899 GO:GO:0032728
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150 KO:K03021
GeneTree:ENSGT00690000102214 OMA:DMIMNPH CTD:55703
OrthoDB:EOG49ZXND IPI:IPI00365981 RefSeq:NP_001178807.1
UniGene:Rn.37546 Ensembl:ENSRNOT00000009746 GeneID:362858
KEGG:rno:362858 UCSC:RGD:1565311 NextBio:681550 Uniprot:D3ZV30
Length = 1133
Score = 431 (156.8 bits), Expect = 5.3e-65, Sum P(2) = 5.3e-65
Identities = 86/178 (48%), Positives = 111/178 (62%)
Query: 271 GEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQRLKH 330
G T F + V+ + L +GY G + + +G TG + A ++ GP YYQ+LKH
Sbjct: 956 GRFHYGTAFGGS-KVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKH 1014
Query: 331 MVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDP 390
MV DK+H+RARGP +L RQP EGR+RDGGLR GEMERDC I +GA+ L ERL SD
Sbjct: 1015 MVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDA 1074
Query: 391 YRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRL 448
+ + VC CGL+ + C CK+ +S +R+PYA KLLFQEL SMNI PRL
Sbjct: 1075 FEVDVCGQCGLLGYSGW------CHYCKSSCHVSSLRIPYACKLLFQELQSMNIIPRL 1126
Score = 272 (100.8 bits), Expect = 5.3e-65, Sum P(2) = 5.3e-65
Identities = 69/221 (31%), Positives = 125/221 (56%)
Query: 55 GYNQE---DSVILNASAVERGYFRS--MEYLRFRELPAGINSIVAILCYTGYNQEDSVIL 109
GYNQ D+++ + ++ ++ +E + F +LPAG N+ VA++ Y+GY+ ED+++L
Sbjct: 698 GYNQRNRIDTLMYLLAYPQKPMVKTKTIELIDFEKLPAGQNATVAVMSYSGYDIEDALVL 757
Query: 110 NASAVERGYFRSVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGM-RNAIY--DKLDDDGI 166
N ++++RG+ R + +++ K KR +Q F+K R I+ + LD DGI
Sbjct: 758 NKASLDRGFGRCLVYKNAK-CTLKRYTNQT--FDKVMGPMLDAATRKPIWRHEILDADGI 814
Query: 167 IAPGLRVSGDDVVIGKTITLPENEDELEGTT--KRFSKRDGSTFLRNSETGIVDQVMLTL 224
+PG +V V++ K++ + LEG+ ++ +D + + +++VM++
Sbjct: 815 CSPGEKVENKQVLVNKSMPTV-TQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMISS 873
Query: 225 NVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQE 265
N + K+ +R R P+IGDKF+SRHGQKG CG+ QE
Sbjct: 874 NAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQE 914
Score = 187 (70.9 bits), Expect = 4.7e-56, Sum P(2) = 4.7e-56
Identities = 34/79 (43%), Positives = 57/79 (72%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
MG N R+DTL ++L YP KP+V T+++E + F +LPAG N+ VA++ Y+GY+ ED
Sbjct: 694 MGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIDFEKLPAGQNATVAVMSYSGYDIED 753
Query: 61 SVILNASAVERGYFRSMEY 79
+++LN ++++RG+ R + Y
Sbjct: 754 ALVLNKASLDRGFGRCLVY 772
Score = 42 (19.8 bits), Expect = 8.3e-41, Sum P(2) = 8.3e-41
Identities = 23/104 (22%), Positives = 46/104 (44%)
Query: 3 VYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLR--FRELPAGINSIVAILCYTGYNQED 60
VYI++ R+ +++ KP VT + ME L +R ++ +++ Y N+E+
Sbjct: 583 VYISSDGGRL-CRPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHE--SLVEYLDVNEEN 639
Query: 61 SVILNASAVERGYFRSMEYLRFRELPAGINSIVA-ILCYTGYNQ 103
N + E + +L P + + A ++ Y +NQ
Sbjct: 640 DC--NIALYEHTINKDTTHLEIE--PFTLLGVCAGLIPYPHHNQ 679
>DICTYBASE|DDB_G0288449 [details] [associations]
symbol:rpc2 "RNA polymerase III, second largest
subunit" species:44689 "Dictyostelium discoideum" [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0016539 "intein-mediated
protein splicing" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA;ISS] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006360 "transcription from RNA polymerase I
promoter" evidence=ISS] [GO:0005736 "DNA-directed RNA polymerase I
complex" evidence=ISS] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0016779 "nucleotidyltransferase activity"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR006141 InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PROSITE:PS50817
PROSITE:PS50818 dictyBase:DDB_G0288449 PANTHER:PTHR20856
GO:GO:0046872 GO:GO:0003677 GenomeReviews:CM000154_GR
EMBL:AAFI02000111 GO:GO:0006360 GO:GO:0005736 GO:GO:0003899
InterPro:IPR003587 SMART:SM00306 GO:GO:0016539 TIGRFAMs:TIGR01443
TIGRFAMs:TIGR01445 HSSP:P08518 eggNOG:COG0085 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 RefSeq:XP_636731.1
STRING:Q54IZ9 EnsemblProtists:DDB0216313 GeneID:8626608
KEGG:ddi:DDB_G0288449 KO:K03021 OMA:IRRIIMA Uniprot:Q54IZ9
Length = 1608
Score = 416 (151.5 bits), Expect = 1.9e-62, Sum P(2) = 1.9e-62
Identities = 84/181 (46%), Positives = 111/181 (61%)
Query: 271 GEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQRLKH 330
G+ G T F V+ IS +L G+ G + + +G TG + +F GP +YQ+LKH
Sbjct: 1433 GKFGFGTCFGGD-RVENISKVLISKGFSYGGKDYVTSGVTGEPLACFIFFGPIFYQKLKH 1491
Query: 331 MVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDP 390
MV DK+H+RARGP L RQP EGRAR GGLR GEMERDC I +GA+ + ERL SD
Sbjct: 1492 MVMDKMHARARGPTVTLTRQPTEGRARGGGLRLGEMERDCLIGYGASALIMERLMISSDR 1551
Query: 391 YRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMV 450
+ ++ C CG + C+ CK+ IS +++PYA KLLFQEL +MNI PRL +
Sbjct: 1552 FTVYACKNCGFLGYEGY------CQYCKSSVDISTIQIPYACKLLFQELQAMNIVPRLKL 1605
Query: 451 V 451
V
Sbjct: 1606 V 1606
Score = 268 (99.4 bits), Expect = 1.9e-62, Sum P(2) = 1.9e-62
Identities = 63/196 (32%), Positives = 105/196 (53%)
Query: 75 RSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFRSYKDAESKR 134
R+++ L + +LPAG N+ VA++ Y+GY+ ED++++N ++++RG+ R + + + K
Sbjct: 1203 RTIDLLNWYKLPAGHNATVAVMSYSGYDIEDALVMNKASLDRGFGRCIVLKKQVTSIKKH 1262
Query: 135 IGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGK-----TITLPEN 189
D ++ P T +R Y LD DGI PG +++ K TI N
Sbjct: 1263 GNDTSDRIFPP---TPNDLRQPKYGLLDSDGIAKPGELAQKGQILVNKYSPLNTIDATPN 1319
Query: 190 EDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFA 249
+ + + + S G + +D+V+LT D K+ +RS R P++GDKF+
Sbjct: 1320 PELIPDSAYKSSYM-GYKY---DNPAFIDKVLLTSGDDEQLLIKMLMRSTRRPELGDKFS 1375
Query: 250 SRHGQKGTCGIQYRQE 265
SRHGQKG CGI +QE
Sbjct: 1376 SRHGQKGVCGIIVKQE 1391
Score = 157 (60.3 bits), Expect = 9.2e-51, Sum P(2) = 9.2e-51
Identities = 28/75 (37%), Positives = 53/75 (70%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
+G N R+DTL ++L + +PL TR+++ L + +LPAG N+ VA++ Y+GY+ ED
Sbjct: 1174 IGAIAYNQLTRIDTLLYLLVHTQRPLCQTRTIDLLNWYKLPAGHNATVAVMSYSGYDIED 1233
Query: 61 SVILNASAVERGYFR 75
++++N ++++RG+ R
Sbjct: 1234 ALVMNKASLDRGFGR 1248
>TAIR|locus:2095233 [details] [associations]
symbol:NRPD2A "nuclear RNA polymerase D2A" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA;ISS]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0031047
"gene silencing by RNA" evidence=IMP] [GO:0000418 "DNA-directed RNA
polymerase IV complex" evidence=IDA;IPI] [GO:0005720 "nuclear
heterochromatin" evidence=IDA] [GO:0006306 "DNA methylation"
evidence=IMP;IDA] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=IGI;IMP] [GO:0000419 "DNA-directed RNA
polymerase V complex" evidence=IDA;IPI] [GO:0030880 "RNA polymerase
complex" evidence=IPI] [GO:0035194 "posttranscriptional gene
silencing by RNA" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0050776 "regulation of immune response"
evidence=IMP] [GO:0050832 "defense response to fungus"
evidence=IMP] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PROSITE:PS01166 PANTHER:PTHR20856 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0050776 GO:GO:0006355 GO:GO:0050832
GO:GO:0046872 GO:GO:0003677 GO:GO:0005720 EMBL:AP000377
GO:GO:0006351 UniGene:At.37653 GO:GO:0030422 GO:GO:0006306
GO:GO:0003899 GO:GO:0000418 GO:GO:0000419 HSSP:P08518
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000222962 EMBL:AY862891 EMBL:AY935711 EMBL:AK176111
IPI:IPI00546801 RefSeq:NP_001189957.1 RefSeq:NP_189020.2
ProteinModelPortal:Q9LK40 SMR:Q9LK40 STRING:Q9LK40 PaxDb:Q9LK40
PRIDE:Q9LK40 EnsemblPlants:AT3G23780.1 EnsemblPlants:AT3G23780.2
GeneID:821960 KEGG:ath:AT3G23780 GeneFarm:4224 TAIR:At3g23780
InParanoid:Q9LK40 KO:K16252 OMA:CRICESA PhylomeDB:Q9LK40
ProtClustDB:CLSN2681572 Genevestigator:Q9LK40 Uniprot:Q9LK40
Length = 1172
Score = 368 (134.6 bits), Expect = 8.0e-57, Sum P(2) = 8.0e-57
Identities = 82/198 (41%), Positives = 113/198 (57%)
Query: 255 KG-TCGIQYRQEVSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRK 313
KG C IQ ++ ATPF+ V +I+ L G+ GNE ++NG +G
Sbjct: 967 KGIACPIQKEGSSAAYTKLTRHATPFSTP-GVTEITEQLHRAGFSRWGNERVYNGRSGEM 1025
Query: 314 INAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQIS 373
+ + +F+GPT+YQRL HM +DK+ R GPV L RQP+ R R GG++FGEMERDC I+
Sbjct: 1026 MRSMIFMGPTFYQRLVHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIA 1085
Query: 374 HGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANMRNNTFE-------CKGCKNKTQISQV 426
HGA+ L ERLF +SD ++H+C C A R + C+ C + + +V
Sbjct: 1086 HGASANLHERLFTLSDSSQMHICRKCKTYANVIERTPSSGRKIRGPYCRVCVSSDHVVRV 1145
Query: 427 RLPYAAKLLFQELMSMNI 444
+PY AKLL QEL SM I
Sbjct: 1146 YVPYGAKLLCQELFSMGI 1163
Score = 259 (96.2 bits), Expect = 8.0e-57, Sum P(2) = 8.0e-57
Identities = 68/198 (34%), Positives = 109/198 (55%)
Query: 70 ERGYFRSM--EYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFRSY 127
++ F+++ E L+ L G N+IVA+ + GYNQEDS+++N +++ERG FRS RSY
Sbjct: 749 QKPLFKTLASECLKKEVLFNGQNAIVAVNVHLGYNQEDSIVMNKASLERGMFRSEQIRSY 808
Query: 128 KDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLP 187
K + ++ ++ ++ + + D L+DDG G +S D+VIG+
Sbjct: 809 KAEVDAKDSEKRKKMDELVQFGKTHSKIGKVDSLEDDGFPFIGANMSTGDIVIGRC---- 864
Query: 188 ENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDK 247
T+ S D S L+++E GIV +V+L+ N +G F + +R VR P +GDK
Sbjct: 865 ---------TE--SGADHSIKLKHTERGIVQKVVLSSNDEGKNFAAVSLRQVRSPCLGDK 913
Query: 248 FASRHGQKGTCGIQYRQE 265
F+S HGQKG G Q+
Sbjct: 914 FSSMHGQKGVLGYLEEQQ 931
Score = 180 (68.4 bits), Expect = 1.6e-48, Sum P(2) = 1.6e-48
Identities = 38/81 (46%), Positives = 55/81 (67%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
+G TN ++R DTL+ L+YP KPL T + E L+ L G N+IVA+ + GYNQED
Sbjct: 727 IGFSSTNPNIRCDTLSQQLFYPQKPLFKTLASECLKKEVLFNGQNAIVAVNVHLGYNQED 786
Query: 61 SVILNASAVERGYFRSMEYLR 81
S+++N +++ERG FRS E +R
Sbjct: 787 SIVMNKASLERGMFRS-EQIR 806
>WB|WBGene00017300 [details] [associations]
symbol:rpc-2 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0006915
"apoptotic process" evidence=IMP] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007646
InterPro:IPR007647 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0006915
GO:GO:0002119 GO:GO:0003677 GO:GO:0000003 GO:GO:0006351
GO:GO:0003899 EMBL:FO081001 HSSP:P08518 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000222962 KO:K03021 GeneTree:ENSGT00690000102214
OMA:DMIMNPH PIR:T16011 RefSeq:NP_498192.2 ProteinModelPortal:Q27492
STRING:Q27492 PaxDb:Q27492 EnsemblMetazoa:F09F7.3.1
EnsemblMetazoa:F09F7.3.2 GeneID:175767 KEGG:cel:CELE_F09F7.3
UCSC:F09F7.3.1 CTD:175767 WormBase:F09F7.3 InParanoid:Q27492
NextBio:889574 Uniprot:Q27492
Length = 1154
Score = 428 (155.7 bits), Expect = 8.4e-56, Sum P(2) = 8.4e-56
Identities = 86/209 (41%), Positives = 126/209 (60%)
Query: 244 IGDKFASRHGQKGTCGIQYRQEVSSNKGEIGDAT-PFNDAVNVQKISTLLQEY---GYQL 299
+ D + HG + E+ S K + + T + A ++ + +E GY
Sbjct: 945 VPDMIMNPHGYPSRMTVGKLMELLSGKAGVVNGTYHYGTAFGGDQVKDVCEELAACGYNY 1004
Query: 300 RGNEVMFNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDG 359
G +++ +G TG+ ++A ++ GP YYQ+LKHMV DK+H+RARGP L RQP EGR+R+G
Sbjct: 1005 MGKDMLTSGITGQPLSAYIYFGPIYYQKLKHMVLDKMHARARGPRAALTRQPTEGRSREG 1064
Query: 360 GLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKN 419
GLR GEMERDC I++GA+ L ERL SD +++ VC CG+I C+ C++
Sbjct: 1065 GLRLGEMERDCLIAYGASMLLIERLMVSSDEFKVDVCTGCGVIGSKGW------CQKCRS 1118
Query: 420 KTQISQVRLPYAAKLLFQELMSMNIAPRL 448
++ +++PYA KLLFQEL SMNI PRL
Sbjct: 1119 SKSMANIKIPYACKLLFQELQSMNIVPRL 1147
Score = 271 (100.5 bits), Expect = 2.8e-20, P = 2.8e-20
Identities = 77/261 (29%), Positives = 126/261 (48%)
Query: 56 YNQE---DSVILNASAVERGYFRS--MEYLRFRELPAGINSIVAILCYTGYNQEDSVILN 110
YNQ+ DS++ +R +S +E F +LPAG N I+A++ Y+GY+ ED+++LN
Sbjct: 712 YNQQKRIDSIMYLLCYPQRPLVKSKTIELTNFEKLPAGANGIIAVMSYSGYDIEDALVLN 771
Query: 111 ASAVERGYFRSVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYD--KLDDDGIIA 168
++++RGY R + ++ K K ++ P R I+ LD +GI+
Sbjct: 772 KASLDRGYGRCLVYKHVKGTAKKYPNQTFDRLLGPALDP--NTRKPIFKHKNLDQEGIVF 829
Query: 169 PGLRVSGDDVVIGKTITLPENED----ELEGTT-----KRFSKRDGSTFLRNSETGIVDQ 219
G R+ +I K + + E T ++ +D S + ++
Sbjct: 830 AGARIMPKQTIINKHMPVVSGESGPGASASANTIGIAGRQVDYKDVSITYKTPTPSYAER 889
Query: 220 VMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEVSSNKGEIGDATPF 279
V+LT N D K+ +R R P++GDKF+SRHGQKG CG+ +QE D PF
Sbjct: 890 VLLTYNEDEAHLFKVLLRQTRRPELGDKFSSRHGQKGVCGLIAQQE---------DM-PF 939
Query: 280 NDAVNVQKISTLLQEYGYQLR 300
ND V + ++ +GY R
Sbjct: 940 NDLGMVPDM--IMNPHGYPSR 958
Score = 188 (71.2 bits), Expect = 8.4e-56, Sum P(2) = 8.4e-56
Identities = 32/79 (40%), Positives = 56/79 (70%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
MG N R+D++ ++L YP +PLV ++++E F +LPAG N I+A++ Y+GY+ ED
Sbjct: 707 MGTIAYNQQKRIDSIMYLLCYPQRPLVKSKTIELTNFEKLPAGANGIIAVMSYSGYDIED 766
Query: 61 SVILNASAVERGYFRSMEY 79
+++LN ++++RGY R + Y
Sbjct: 767 ALVLNKASLDRGYGRCLVY 785
>ASPGD|ASPL0000054387 [details] [associations]
symbol:AN0321 species:162425 "Emericella nidulans"
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007646 InterPro:IPR007647 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567 PROSITE:PS01166
PANTHER:PTHR20856 EMBL:BN001308 GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
OMA:DMIMNPH EnsemblFungi:CADANIAT00002388 Uniprot:C8VU19
Length = 1225
Score = 558 (201.5 bits), Expect = 7.7e-53, P = 7.7e-53
Identities = 152/462 (32%), Positives = 234/462 (50%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
+G +N +R+D++ +++ YP KP+V +R++E ++ +LPAG N+ VA++ Y+GY+ ED
Sbjct: 782 IGAIASNQFLRIDSILYLMVYPQKPMVKSRTIELTKYDQLPAGQNATVAVMSYSGYDIED 841
Query: 61 SVILNASAVERGYFRSMEYLRF-RELPAGINSIVAILCYTGYNQEDSVILNASAVERGYF 119
+++LN +V+RG+ R + ++ + + N IL Y + D+ I + +E
Sbjct: 842 ALVLNKGSVDRGFGRCQVFRKYVTNMKSYSNGTKDILSPPTY-ENDAPIRKHALLESDGL 900
Query: 120 RSVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVV 179
+V E G+ P++ GM + + ++ D
Sbjct: 901 AAV-------GEQVNAGEVYINKSTPDQSMSSGMPGSDAGRPISYNPTPMTYKLP-DPAY 952
Query: 180 IGKT-ITLPENEDELEGTTKRFSKRD--GSTFL-RNSETG----IVDQVMLTLNVDGYKF 231
I K I+ ENE+++ R ++R G F R+ + G IVDQ + G
Sbjct: 953 IDKVMISATENENQIIKVLTRQTRRPEVGDKFSSRHGQKGVTGIIVDQADMPFTDQGIN- 1011
Query: 232 CKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEVSSNK-----GEIGDATPFNDAVNVQ 286
P I + HG + E+ + K G+ G T F+ Q
Sbjct: 1012 ----------PDI---IMNPHGFPSRMTVGKMLELVAGKAGVLSGQHGYGTCFSGTPVEQ 1058
Query: 287 KISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQI 346
TL+ + G+ G + + +G TG + VF GP YYQ+LKHMV DK+HSRARGP
Sbjct: 1059 MTQTLIDK-GFSYGGKDYLTSGITGEALPFYVFTGPIYYQKLKHMVQDKMHSRARGPRAT 1117
Query: 347 LVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNFCGLIAIAN 406
L RQP EGR+RDGGLR GEMERDC I++G +Q L ERL SD + + VC CG + N
Sbjct: 1118 LTRQPTEGRSRDGGLRLGEMERDCLIAYGTSQLLLERLMISSDRHEVDVCEQCGFMGYLN 1177
Query: 407 MRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRL 448
C+ CK+ + ++ +PYAAKLL QELMSMN+ RL
Sbjct: 1178 W------CQRCKSSRSVVKMVIPYAAKLLIQELMSMNVTARL 1213
>TAIR|locus:2019272 [details] [associations]
symbol:NRPA2 "nuclear RNA polymerase A2" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=ISM] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR009674 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF06883 PROSITE:PS01166
PANTHER:PTHR20856 EMBL:CP002684 GO:GO:0005829 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 KO:K03002 OMA:EVFAGVT
GO:GO:0032549 Gene3D:2.40.270.10 IPI:IPI00518589 RefSeq:NP_564341.2
UniGene:At.16301 ProteinModelPortal:F4I366 SMR:F4I366 PRIDE:F4I366
EnsemblPlants:AT1G29940.1 GeneID:839872 KEGG:ath:AT1G29940
Uniprot:F4I366
Length = 1178
Score = 312 (114.9 bits), Expect = 1.4e-46, Sum P(4) = 1.4e-46
Identities = 62/152 (40%), Positives = 92/152 (60%)
Query: 271 GEIGDATPFNDAVN-------------VQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQ 317
G+ DATPF DAV V + ++L+E G+ G E +++G+ G ++ +
Sbjct: 959 GKFVDATPFRDAVKKTNGEEESKSSLLVDDLGSMLKEKGFNHYGTETLYSGYLGVELKCE 1018
Query: 318 VFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAA 377
+F+GP YYQRL+HMV DK R+ G V L QP++GR R GG+RFGEMERD ++HGA+
Sbjct: 1019 IFMGPVYYQRLRHMVSDKFQVRSTGQVDQLTHQPIKGRKRGGGIRFGEMERDSLLAHGAS 1078
Query: 378 QFLRERLFEVSDPYRIHVCNFCGLIAIANMRN 409
L +RL SD + VC+ CG + +++ N
Sbjct: 1079 YLLHDRLHTSSDHHIADVCSLCGSLLTSSVVN 1110
Score = 143 (55.4 bits), Expect = 9.8e-39, Sum P(3) = 9.8e-39
Identities = 34/120 (28%), Positives = 64/120 (53%)
Query: 60 DSVILNASAVERGYFRSMEYLRFR--ELPAGINSIVAILCYTGYNQEDSVILNASAVERG 117
D I + + R+ Y + E P G N+IVA+L +TG++ ED++ILN S+VERG
Sbjct: 726 DQKIYHLQTPQSPVVRTKTYTTYSIDENPTGTNAIVAVLAHTGFDMEDAMILNKSSVERG 785
Query: 118 YFRSVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDD 177
+++ E+ + DQ +F+ ++ + A + ++D DG+ + G ++ D+
Sbjct: 786 MCHGQIYQT----ENIDLSDQNSRFDSGSKSFRRSTNKAEHFRIDADGLPSVGQKLYPDE 841
Score = 133 (51.9 bits), Expect = 1.4e-46, Sum P(4) = 1.4e-46
Identities = 28/69 (40%), Positives = 40/69 (57%)
Query: 11 RMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVE 70
R D + L P P+V T++ E P G N+IVA+L +TG++ ED++ILN S+VE
Sbjct: 724 RADQKIYHLQTPQSPVVRTKTYTTYSIDENPTGTNAIVAVLAHTGFDMEDAMILNKSSVE 783
Query: 71 RGYFRSMEY 79
RG Y
Sbjct: 784 RGMCHGQIY 792
Score = 119 (46.9 bits), Expect = 1.4e-46, Sum P(4) = 1.4e-46
Identities = 40/129 (31%), Positives = 64/129 (49%)
Query: 131 ESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENE 190
E+ + DQ +F+ ++ + A + ++D DG+ + G ++ D+ +I
Sbjct: 795 ENIDLSDQNSRFDSGSKSFRRSTNKAEHFRIDADGLPSVGQKLYPDEPYC--SIY----- 847
Query: 191 DELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGY-KFCKIRVRSVRIPQIGDKFA 249
DE+ T R KR G+ + IVD V + + + + IR R R P IGDKF+
Sbjct: 848 DEVTNKT-RHMKRKGT------DPVIVDFVSVDMKSKKHPQRANIRFRHARNPIIGDKFS 900
Query: 250 SRHGQKGTC 258
SRHGQKG C
Sbjct: 901 SRHGQKGVC 909
Score = 65 (27.9 bits), Expect = 1.4e-46, Sum P(4) = 1.4e-46
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 414 CKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRLMV 450
C CK + V +PY + L EL SMNI L +
Sbjct: 1134 CYSCKTSKGMETVAMPYVFRYLAAELASMNIKMTLQL 1170
>DICTYBASE|DDB_G0293560 [details] [associations]
symbol:rpa2 "RNA polymerase I, second largest
subunit" species:44689 "Dictyostelium discoideum" [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006360 "transcription from RNA polymerase I promoter"
evidence=ISS] [GO:0005736 "DNA-directed RNA polymerase I complex"
evidence=ISS] [GO:0005730 "nucleolus" evidence=IEA;ISS] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR009674 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF06883 PROSITE:PS01166 dictyBase:DDB_G0293560
PANTHER:PTHR20856 GenomeReviews:CM000155_GR GO:GO:0046872
GO:GO:0003677 EMBL:AAFI02000218 GO:GO:0006360 GO:GO:0005736
GO:GO:0003899 RefSeq:XP_629008.1 HSSP:P08518 STRING:Q54BM1
PRIDE:Q54BM1 EnsemblProtists:DDB0216278 GeneID:8629292
KEGG:ddi:DDB_G0293560 eggNOG:COG0085 KO:K03002 OMA:EVFAGVT
ProtClustDB:CLSZ2728683 GO:GO:0032549 Gene3D:2.40.270.10
Uniprot:Q54BM1
Length = 1130
Score = 357 (130.7 bits), Expect = 1.5e-46, Sum P(2) = 1.5e-46
Identities = 79/188 (42%), Positives = 109/188 (57%)
Query: 271 GEIGDATPFN-DAVN--VQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQR 327
G+ DAT F D N + L + G+ GNE M++G TG++ ++F G YYQR
Sbjct: 942 GKFQDATAFQFDENNTAIDFFGEQLAKAGFNRFGNEQMYSGTTGKEFECEIFFGVCYYQR 1001
Query: 328 LKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEV 387
L+HMV DK RA G V L RQP++GR GG+RFGEMERD ++HGA+ L +RL +
Sbjct: 1002 LRHMVKDKYQVRALGKVNALTRQPIKGRKVGGGIRFGEMERDSLLAHGASFCLNDRLMKS 1061
Query: 388 SDPYRIHVCNFCG-LIAIANMR---NNTF-ECKGCKNKTQISQVRLPYAAKLLFQELMSM 442
SD +I VC CG + I + + N T ECK CK+ I+ + +PY L EL ++
Sbjct: 1062 SDFAKIKVCKLCGSTLTIYSKKDYSNQTVSECKSCKSSDSIATISIPYVFTYLVAELAAV 1121
Query: 443 NIAPRLMV 450
NI +L V
Sbjct: 1122 NITMKLQV 1129
Score = 172 (65.6 bits), Expect = 1.5e-46, Sum P(2) = 1.5e-46
Identities = 56/200 (28%), Positives = 95/200 (47%)
Query: 60 DSVILNASAVERGYFRSMEYLRFR--ELPAGINSIVAILCYTGYNQEDSVILNASAVERG 117
D+ + V++ + +FR + P G N+++A++ TGY+ ED++I+N SA ERG
Sbjct: 702 DNKLYKVQNVQKPIVHTKNQFKFRCNDYPHGCNAVIAVISNTGYDMEDAMIINKSAYERG 761
Query: 118 YFR-SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGD 176
+ SV+ Y D + +FE+ ++T G N + D+LD I GL G
Sbjct: 762 FGHGSVYKNEYIDLDQGL-----SRFEQ--KKTFFGRPNTVVDELDKF-IDTDGLPFVGR 813
Query: 177 DVVIGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRV 236
+ G+ + TK + ++ ++ + I T + +++
Sbjct: 814 LIKPGEPYYTYIRPSDGRQVTKDYKGKE-EAYIEDVRI-IFGPNGATRDPSKINNICVKL 871
Query: 237 RSVRIPQIGDKFASRHGQKG 256
R R P IGDKF+SRHGQKG
Sbjct: 872 RFNRNPVIGDKFSSRHGQKG 891
Score = 136 (52.9 bits), Expect = 9.1e-43, Sum P(2) = 9.1e-43
Identities = 28/91 (30%), Positives = 51/91 (56%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
MG + ++ R D + + KP+V T++ R + P G N+++A++ TGY+ ED
Sbjct: 690 MGTPLHSYPFRTDNKLYKVQNVQKPIVHTKNQFKFRCNDYPHGCNAVIAVISNTGYDMED 749
Query: 61 SVILNASAVERGYFRSMEYLR-FRELPAGIN 90
++I+N SA ERG+ Y + +L G++
Sbjct: 750 AMIINKSAYERGFGHGSVYKNEYIDLDQGLS 780
>FB|FBgn0003278 [details] [associations]
symbol:RpI135 "RNA polymerase I 135kD subunit" species:7227
"Drosophila melanogaster" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=ISS] [GO:0005736 "DNA-directed RNA polymerase I
complex" evidence=ISS] [GO:0006360 "transcription from RNA
polymerase I promoter" evidence=ISS;NAS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0003677 "DNA binding" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007647 InterPro:IPR009674
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04567 Pfam:PF06883 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0005730 EMBL:AE014134 GO:GO:0022008
GO:GO:0046872 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
eggNOG:COG0085 KO:K03002 OMA:EVFAGVT GO:GO:0032549
Gene3D:2.40.270.10 EMBL:X17298 EMBL:AY075569 PIR:JQ0354
RefSeq:NP_476708.1 UniGene:Dm.30753 ProteinModelPortal:P20028
STRING:P20028 PaxDb:P20028 EnsemblMetazoa:FBtr0078054 GeneID:33210
KEGG:dme:Dmel_CG4033 CTD:33210 FlyBase:FBgn0003278
GeneTree:ENSGT00550000074993 InParanoid:P20028 OrthoDB:EOG4ZKH24
PhylomeDB:P20028 GenomeRNAi:33210 NextBio:782449 Bgee:P20028
GermOnline:CG4033 Uniprot:P20028
Length = 1129
Score = 335 (123.0 bits), Expect = 1.3e-42, Sum P(2) = 1.3e-42
Identities = 77/192 (40%), Positives = 109/192 (56%)
Query: 271 GEIGDATPFN---DAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQR 327
G + DATPF + + +L+ GY G E +++G GR++ A +F G +YQR
Sbjct: 933 GNVYDATPFRFSEENTAIDYFGKMLEAGGYNYYGTERLYSGVDGREMTADIFFGVVHYQR 992
Query: 328 LKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEV 387
L+HMV DK R+ G V+ QP++GR R GG+RFGEMERD ISHGAA L++RLF
Sbjct: 993 LRHMVFDKWQVRSTGAVEARTHQPIKGRKRGGGVRFGEMERDALISHGAAFLLQDRLFHN 1052
Query: 388 SDPYRIHVCNFCGLIAIANM-----RNNTF-------ECKGCKNKTQISQVRLPYAAKLL 435
SD VC+ CG I +A + RN T C+ C + + +S + +P++ K L
Sbjct: 1053 SDKTHTLVCHKCGSI-LAPLQRIVKRNETGGLSSQPDTCRLCGDNSSVSMIEIPFSFKYL 1111
Query: 436 FQELMSMNIAPR 447
EL S+NI R
Sbjct: 1112 VTELSSVNINAR 1123
Score = 157 (60.3 bits), Expect = 1.3e-42, Sum P(2) = 1.3e-42
Identities = 60/198 (30%), Positives = 94/198 (47%)
Query: 74 FRSMEY--LRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGY-FRSVFFRSYKDA 130
FR + Y ++ + G N+IVA++ YTGY+ ED++I+N +A ERG+ + S++ +
Sbjct: 720 FRPVHYDNIQLDDFAMGTNAIVAVISYTGYDMEDAMIINKAAYERGFAYGSIYKTKFLTL 779
Query: 131 ESKRIGDQEEQFEK-PNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPEN 189
+ K F + P+ M I LD DG+ PG ++S G + +
Sbjct: 780 DKK-----SSYFARHPH------MPELI-KHLDTDGLPHPGSKLS-----YGSPLYCYFD 822
Query: 190 EDELEGTTKRFSKRDGSTFLRNSETGIVDQV--MLTLNVDGYKFCKIRVRSVRIPQIGDK 247
E T + K D E IV+ + + + ++ K I +R R IGDK
Sbjct: 823 G---EVATYKVVKMD------EKEDCIVESIRQLGSFDLSPKKMVAITLRVPRPATIGDK 873
Query: 248 FASRHGQKGTCGIQYRQE 265
FASR GQKG C +Y E
Sbjct: 874 FASRAGQKGICSQKYPAE 891
Score = 114 (45.2 bits), Expect = 4.1e-38, Sum P(2) = 4.1e-38
Identities = 27/86 (31%), Positives = 46/86 (53%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
MG N+ + + L P PL + ++ + G N+IVA++ YTGY+ ED
Sbjct: 694 MGTPCLNWPKQAANKLYRLQTPGTPLFRPVHYDNIQLDDFAMGTNAIVAVISYTGYDMED 753
Query: 61 SVILNASAVERGY-FRSMEYLRFREL 85
++I+N +A ERG+ + S+ +F L
Sbjct: 754 AMIINKAAYERGFAYGSIYKTKFLTL 779
>WB|WBGene00008781 [details] [associations]
symbol:rpoa-2 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0043652 "engulfment of apoptotic cell" evidence=IMP]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007647 InterPro:IPR009674 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04567 Pfam:PF06883 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0005634 GO:GO:0009792 GO:GO:0040007 GO:GO:0002119
GO:GO:0003677 GO:GO:0006351 GO:GO:0040035 GO:GO:0043652
GO:GO:0003899 HSSP:P08518 eggNOG:COG0085 KO:K03002 OMA:EVFAGVT
GO:GO:0032549 Gene3D:2.40.270.10 GeneTree:ENSGT00550000074993
HOGENOM:HOG000222963 EMBL:Z75535 PIR:T20870 RefSeq:NP_492476.1
ProteinModelPortal:Q27493 SMR:Q27493 STRING:Q27493 PaxDb:Q27493
EnsemblMetazoa:F14B4.3 GeneID:172752 KEGG:cel:CELE_F14B4.3
UCSC:F14B4.3 CTD:172752 WormBase:F14B4.3 InParanoid:Q27493
NextBio:876871 Uniprot:Q27493
Length = 1127
Score = 300 (110.7 bits), Expect = 1.2e-40, Sum P(4) = 1.2e-40
Identities = 59/144 (40%), Positives = 86/144 (59%)
Query: 265 EVSSNKGEIGDATPF---NDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLG 321
+ ++ GE DA+PF D + LL + GY GNE ++G GR++ Q+F G
Sbjct: 910 KAAATHGENYDASPFVFNEDNTAINHFGELLTKAGYNYYGNETFYSGVDGRQMEMQIFFG 969
Query: 322 PTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLR 381
YYQRL+HM+ DK RA GP+ + QP++GR + GG+RFGEMERD I+HG + L+
Sbjct: 970 IVYYQRLRHMIADKFQVRATGPIDPITHQPVKGRKKGGGIRFGEMERDAIIAHGTSFVLQ 1029
Query: 382 ERLFEVSDPYRIHVCNFCG-LIAI 404
+RL SD + C CG L+++
Sbjct: 1030 DRLLNCSDRDVAYACRRCGSLLSV 1053
Score = 138 (53.6 bits), Expect = 1.2e-40, Sum P(4) = 1.2e-40
Identities = 24/73 (32%), Positives = 43/73 (58%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
MG + +H R D + L +P +P++ + E E P G N+ VA++ YTGY+ ED
Sbjct: 675 MGTAVHAWHSRADNKMYRLQFPQQPMLKLEAYEKYEMDEYPLGTNACVAVISYTGYDMED 734
Query: 61 SVILNASAVERGY 73
++ +N ++ +RG+
Sbjct: 735 AMTINKASYQRGF 747
Score = 95 (38.5 bits), Expect = 3.4e-36, Sum P(4) = 3.4e-36
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 84 ELPAGINSIVAILCYTGYNQEDSVILNASAVERGY 118
E P G N+ VA++ YTGY+ ED++ +N ++ +RG+
Sbjct: 713 EYPLGTNACVAVISYTGYDMEDAMTINKASYQRGF 747
Score = 86 (35.3 bits), Expect = 1.2e-40, Sum P(4) = 1.2e-40
Identities = 33/93 (35%), Positives = 43/93 (46%)
Query: 164 DGIIAPGLRVSGDDVVIGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLT 223
DG+ PG R D+V +T N + + T +F + + G+V V
Sbjct: 784 DGLPIPGRRYFLDEVYY---VTF--NMETGDFRTHKFH------YAEPAYCGLVRIVEQG 832
Query: 224 LNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 256
G K I+ R R P IGDKFASRHGQKG
Sbjct: 833 EGDSGAKHALIQWRIERNPIIGDKFASRHGQKG 865
Score = 54 (24.1 bits), Expect = 1.2e-40, Sum P(4) = 1.2e-40
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 411 TFECKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRL 448
T C+ C Q+ +++P + L EL +MN+ +L
Sbjct: 1079 TQRCRTCDKDDQVFLLQVPRVFRYLTAELAAMNVKIKL 1116
>POMBASE|SPBP23A10.07 [details] [associations]
symbol:rpa2 "DNA-directed RNA polymerase I complex
subunit Rpa2" species:4896 "Schizosaccharomyces pombe" [GO:0003677
"DNA binding" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=ISO] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=ISO] [GO:0006360 "transcription from
RNA polymerase I promoter" evidence=ISO] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007647 InterPro:IPR009674
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04567 Pfam:PF06883
PROSITE:PS01166 PomBase:SPBP23A10.07 PANTHER:PTHR20856
GO:GO:0046872 GO:GO:0003677 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0006360 GO:GO:0005736 GO:GO:0003899 eggNOG:COG0085 KO:K03002
OMA:EVFAGVT GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000222963 PIR:T50394 RefSeq:NP_595819.2 STRING:Q9P7X8
EnsemblFungi:SPBP23A10.07.1 GeneID:2541280 KEGG:spo:SPBP23A10.07
OrthoDB:EOG4W11N4 NextBio:20802391 Uniprot:Q9P7X8
Length = 1174
Score = 297 (109.6 bits), Expect = 3.3e-40, Sum P(3) = 3.3e-40
Identities = 62/152 (40%), Positives = 88/152 (57%)
Query: 275 DATPF---NDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQRLKHM 331
D+TPF L + GY GNE M++G TG+++ A +++G YYQRL+HM
Sbjct: 965 DSTPFIYSEQQTAADYFGEQLVKAGYNYHGNEPMYSGITGQEMKADIYIGVVYYQRLRHM 1024
Query: 332 VDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPY 391
V DK R GP+ L RQP++GR R GG+RFGEMERD I HG + +++RL SD
Sbjct: 1025 VSDKFQVRTTGPIHNLTRQPVKGRKRAGGIRFGEMERDAVIGHGTSFLMQDRLMNCSDYA 1084
Query: 392 RIHVCNFCGLIAIANMRNNTFECKGCKNKTQI 423
+ VC CG I I+ M +T G + +++
Sbjct: 1085 QSWVCRDCGSI-ISIM--STISMNGVGSASEV 1113
Score = 206 (77.6 bits), Expect = 3.3e-40, Sum P(3) = 3.3e-40
Identities = 62/179 (34%), Positives = 93/179 (51%)
Query: 86 PAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFR--SYKDAESKRIGDQE-EQF 142
P G N++VA++ YTGY+ ED++ILN SA ERG+ ++ S+ ++ +R G+ F
Sbjct: 751 PNGTNAVVAVISYTGYDMEDAMILNKSAHERGFGYGTVYKGESFDLSQKRRRGEPVVHHF 810
Query: 143 EKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENEDELEGTTKRFSK 202
T R KLD DG+ G+++ D ++ DE G + F +
Sbjct: 811 GFAPGST---PRREWLQKLDADGLPFIGIKLEDGDPIVAYY-------DESTG--QNFIE 858
Query: 203 RDGSTFLRNSETGIVDQVMLTLNVDGYKFCK---IRVRSVRIPQIGDKFASRHGQKGTC 258
T+ +E G VD+V L N G C+ +++R R P IGDKF+SRHGQKG C
Sbjct: 859 ----TY-HGTEPGFVDEVRLLGNDVGDSECQQIHVKLRITRSPIIGDKFSSRHGQKGIC 912
Score = 118 (46.6 bits), Expect = 4.6e-31, Sum P(3) = 4.6e-31
Identities = 27/73 (36%), Positives = 38/73 (52%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
MG T R D + L P+V + P G N++VA++ YTGY+ ED
Sbjct: 711 MGTPGTALRYRTDNKLYRLQTGQTPVVRPKLHNTYGLDHYPNGTNAVVAVISYTGYDMED 770
Query: 61 SVILNASAVERGY 73
++ILN SA ERG+
Sbjct: 771 AMILNKSAHERGF 783
Score = 38 (18.4 bits), Expect = 3.3e-40, Sum P(3) = 3.3e-40
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 421 TQISQVRLPYAAKLLFQELMSMNIAPRLMV 450
T + + LP L EL +MNI L V
Sbjct: 1144 TNTTLIALPSVFNYLTAELTAMNIKMMLEV 1173
>UNIPROTKB|E2REX8 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007647 InterPro:IPR009674
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04567 Pfam:PF06883
PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005634 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 KO:K03002 OMA:EVFAGVT GO:GO:0032549
Gene3D:2.40.270.10 GeneTree:ENSGT00550000074993 Gene3D:2.40.50.150
EMBL:AAEX03010908 RefSeq:XP_003639648.1 Ensembl:ENSCAFT00000011494
GeneID:100856298 KEGG:cfa:100856298 Uniprot:E2REX8
Length = 1135
Score = 318 (117.0 bits), Expect = 4.7e-40, Sum P(2) = 4.7e-40
Identities = 72/190 (37%), Positives = 100/190 (52%)
Query: 275 DATPFNDAVN---VQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQRLKHM 331
DATPF + ++ LL+ GY G E +++G +G ++ A +F+G YYQRL+HM
Sbjct: 946 DATPFTFSEENSALEYFGELLKAAGYNFYGTERLYSGISGIELEADIFIGVVYYQRLRHM 1005
Query: 332 VDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPY 391
V DK R G + QP+ GR GG+RFGEMERD ++HG + L +RLF SD
Sbjct: 1006 VSDKFQVRTTGARDKVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRS 1065
Query: 392 RIHVCNFCGLI----------AIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMS 441
HVC CG + + + MRN + C C I V +PY + EL +
Sbjct: 1066 VAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYNCTLCDRSDTIDTVSVPYVFRYFVAELAA 1125
Query: 442 MNIAPRLMVV 451
MNI +L VV
Sbjct: 1126 MNIKVKLDVV 1135
Score = 174 (66.3 bits), Expect = 4.7e-40, Sum P(2) = 4.7e-40
Identities = 64/182 (35%), Positives = 86/182 (47%)
Query: 78 EYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR-SVFFRSYKDAESK-RI 135
+Y P G N+IVA++ YTGY+ ED++I+N ++ ERG+ SV+ + D K +
Sbjct: 728 DYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQ 787
Query: 136 GDQEEQFE-KPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENEDELE 194
GD F KP I KLDDDG+ G R+ D L N E
Sbjct: 788 GDDSLVFGVKPGDPR-------ILQKLDDDGLPFIGARLQYGDPYYSY---LNLNTGESF 837
Query: 195 GTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQ 254
T + K + + N + D T N +K I +R R P IGDKFASRHGQ
Sbjct: 838 VT---YYKSKENCIVDNIKVCSND----TGN-GRFKCVCITMRVPRNPTIGDKFASRHGQ 889
Query: 255 KG 256
KG
Sbjct: 890 KG 891
Score = 140 (54.3 bits), Expect = 1.7e-36, Sum P(2) = 1.7e-36
Identities = 28/79 (35%), Positives = 42/79 (53%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
MG + + R D + L P PLV +Y P G N+IVA++ YTGY+ ED
Sbjct: 696 MGFPLLTYQARSDNKLYRLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVAVISYTGYDMED 755
Query: 61 SVILNASAVERGYFRSMEY 79
++I+N ++ ERG+ Y
Sbjct: 756 AMIVNKASWERGFAHGSVY 774
>RGD|620822 [details] [associations]
symbol:Polr1b "polymerase (RNA) I polypeptide B" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] [GO:0005736 "DNA-directed RNA polymerase
I complex" evidence=IEA;ISO;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0007566 "embryo implantation"
evidence=IEA;ISO] [GO:0009303 "rRNA transcription"
evidence=IEA;ISO;IDA] [GO:0009790 "embryo development"
evidence=IEA;ISO] [GO:0017126 "nucleologenesis" evidence=IEA;ISO]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 PROSITE:PS01166 RGD:620822
PANTHER:PTHR20856 GO:GO:0046872 GO:GO:0003677 GO:GO:0009303
GO:GO:0005736 GO:GO:0003899 eggNOG:COG0085 KO:K03002 GO:GO:0032549
Gene3D:2.40.270.10 CTD:84172 HOVERGEN:HBG017742 Gene3D:2.40.50.150
HOGENOM:HOG000222963 EMBL:AF025424 IPI:IPI00231082 PIR:T42368
RefSeq:NP_113961.1 UniGene:Rn.88734 STRING:O54888
PhosphoSite:O54888 PRIDE:O54888 GeneID:83582 KEGG:rno:83582
UCSC:RGD:620822 InParanoid:O54888 NextBio:616115
ArrayExpress:O54888 Genevestigator:O54888
GermOnline:ENSRNOG00000018349 Uniprot:O54888
Length = 1135
Score = 318 (117.0 bits), Expect = 1.6e-39, Sum P(2) = 1.6e-39
Identities = 70/190 (36%), Positives = 100/190 (52%)
Query: 275 DATPF---NDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQRLKHM 331
DATPF + ++ +L+ GY G E +++G +G ++ A +F+G YYQRL+HM
Sbjct: 946 DATPFIFSEENSALEYFGEMLKAAGYNFYGTERLYSGISGMELEADIFIGVVYYQRLRHM 1005
Query: 332 VDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPY 391
V DK R G + QP+ GR GG+RFGEMERD ++HG + L +RLF SD
Sbjct: 1006 VSDKFQVRTTGARDKVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRS 1065
Query: 392 RIHVCNFCGLI----------AIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMS 441
HVC CG + + + MRN + C C I V +PY + EL +
Sbjct: 1066 VAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYNCTVCGRSDSIDTVSVPYVFRYFVAELAA 1125
Query: 442 MNIAPRLMVV 451
MNI +L V+
Sbjct: 1126 MNIKVKLDVI 1135
Score = 169 (64.5 bits), Expect = 1.6e-39, Sum P(2) = 1.6e-39
Identities = 57/174 (32%), Positives = 83/174 (47%)
Query: 86 PAGINSIVAILCYTGYNQEDSVILNASAVERGYFR-SVFFRSYKDAESK-RIGDQEEQFE 143
P G N+IVA++ YTGY+ ED++I+N ++ ERG+ SV+ + D K + GD F
Sbjct: 736 PIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKFKQGDDSLVFG 795
Query: 144 -KPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENEDELEGTTKRFSK 202
KP + KLD+DG+ G ++ D G N + EG +
Sbjct: 796 VKPGDPR-------VMQKLDNDGLPFIGAKLEFGDPYYGYL-----NLNTGEGFVVYYKS 843
Query: 203 RDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 256
++ + N + D +K + VR R P IGDKFASRHGQKG
Sbjct: 844 KENCV-VDNIKVCSNDT-----GSGKFKCVCVTVRVPRNPTIGDKFASRHGQKG 891
Score = 131 (51.2 bits), Expect = 1.5e-35, Sum P(2) = 1.5e-35
Identities = 27/79 (34%), Positives = 42/79 (53%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
MG + + R D + L P PLV ++ P G N+IVA++ YTGY+ ED
Sbjct: 696 MGFPLLTYQDRSDNKLYRLQTPQSPLVRPCMYDHYDMDNYPIGTNAIVAVISYTGYDMED 755
Query: 61 SVILNASAVERGYFRSMEY 79
++I+N ++ ERG+ Y
Sbjct: 756 AMIVNKASWERGFAHGSVY 774
>UNIPROTKB|O54888 [details] [associations]
symbol:Polr1b "DNA-directed RNA polymerase I subunit RPA2"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 PROSITE:PS01166 RGD:620822
PANTHER:PTHR20856 GO:GO:0046872 GO:GO:0003677 GO:GO:0009303
GO:GO:0005736 GO:GO:0003899 eggNOG:COG0085 KO:K03002 GO:GO:0032549
Gene3D:2.40.270.10 CTD:84172 HOVERGEN:HBG017742 Gene3D:2.40.50.150
HOGENOM:HOG000222963 EMBL:AF025424 IPI:IPI00231082 PIR:T42368
RefSeq:NP_113961.1 UniGene:Rn.88734 STRING:O54888
PhosphoSite:O54888 PRIDE:O54888 GeneID:83582 KEGG:rno:83582
UCSC:RGD:620822 InParanoid:O54888 NextBio:616115
ArrayExpress:O54888 Genevestigator:O54888
GermOnline:ENSRNOG00000018349 Uniprot:O54888
Length = 1135
Score = 318 (117.0 bits), Expect = 1.6e-39, Sum P(2) = 1.6e-39
Identities = 70/190 (36%), Positives = 100/190 (52%)
Query: 275 DATPF---NDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQRLKHM 331
DATPF + ++ +L+ GY G E +++G +G ++ A +F+G YYQRL+HM
Sbjct: 946 DATPFIFSEENSALEYFGEMLKAAGYNFYGTERLYSGISGMELEADIFIGVVYYQRLRHM 1005
Query: 332 VDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPY 391
V DK R G + QP+ GR GG+RFGEMERD ++HG + L +RLF SD
Sbjct: 1006 VSDKFQVRTTGARDKVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRS 1065
Query: 392 RIHVCNFCGLI----------AIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMS 441
HVC CG + + + MRN + C C I V +PY + EL +
Sbjct: 1066 VAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYNCTVCGRSDSIDTVSVPYVFRYFVAELAA 1125
Query: 442 MNIAPRLMVV 451
MNI +L V+
Sbjct: 1126 MNIKVKLDVI 1135
Score = 169 (64.5 bits), Expect = 1.6e-39, Sum P(2) = 1.6e-39
Identities = 57/174 (32%), Positives = 83/174 (47%)
Query: 86 PAGINSIVAILCYTGYNQEDSVILNASAVERGYFR-SVFFRSYKDAESK-RIGDQEEQFE 143
P G N+IVA++ YTGY+ ED++I+N ++ ERG+ SV+ + D K + GD F
Sbjct: 736 PIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKFKQGDDSLVFG 795
Query: 144 -KPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENEDELEGTTKRFSK 202
KP + KLD+DG+ G ++ D G N + EG +
Sbjct: 796 VKPGDPR-------VMQKLDNDGLPFIGAKLEFGDPYYGYL-----NLNTGEGFVVYYKS 843
Query: 203 RDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 256
++ + N + D +K + VR R P IGDKFASRHGQKG
Sbjct: 844 KENCV-VDNIKVCSNDT-----GSGKFKCVCVTVRVPRNPTIGDKFASRHGQKG 891
Score = 131 (51.2 bits), Expect = 1.5e-35, Sum P(2) = 1.5e-35
Identities = 27/79 (34%), Positives = 42/79 (53%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
MG + + R D + L P PLV ++ P G N+IVA++ YTGY+ ED
Sbjct: 696 MGFPLLTYQDRSDNKLYRLQTPQSPLVRPCMYDHYDMDNYPIGTNAIVAVISYTGYDMED 755
Query: 61 SVILNASAVERGYFRSMEY 79
++I+N ++ ERG+ Y
Sbjct: 756 AMIVNKASWERGFAHGSVY 774
>UNIPROTKB|F5H643 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0005736 "DNA-directed
RNA polymerase I complex" evidence=IEA] [GO:0007566 "embryo
implantation" evidence=IEA] [GO:0009303 "rRNA transcription"
evidence=IEA] [GO:0009790 "embryo development" evidence=IEA]
[GO:0017126 "nucleologenesis" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007645 InterPro:IPR007647
InterPro:IPR009674 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04565 Pfam:PF04567
Pfam:PF06883 PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005737
GO:GO:0005730 GO:GO:0003677 GO:GO:0009790 GO:GO:0009303
GO:GO:0007566 EMBL:AC012442 GO:GO:0005736 GO:GO:0003899
GO:GO:0032549 Gene3D:2.40.270.10 HGNC:HGNC:20454 GO:GO:0017126
Gene3D:2.40.50.150 IPI:IPI01013053 ProteinModelPortal:F5H643
Ensembl:ENST00000537335 ArrayExpress:F5H643 Bgee:F5H643
Uniprot:F5H643
Length = 924
Score = 318 (117.0 bits), Expect = 1.6e-39, Sum P(2) = 1.6e-39
Identities = 71/190 (37%), Positives = 100/190 (52%)
Query: 275 DATPF---NDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQRLKHM 331
DATPF + ++ +L+ GY G E +++G +G ++ A +F+G YYQRL+HM
Sbjct: 735 DATPFIFSEENSALEYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHM 794
Query: 332 VDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPY 391
V DK R G + QP+ GR GG+RFGEMERD ++HG + L +RLF SD
Sbjct: 795 VSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRS 854
Query: 392 RIHVCNFCGLI----------AIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMS 441
HVC CG + + + MRN + C C I V +PY + EL +
Sbjct: 855 VAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYNCTLCSRSDTIDTVSVPYVFRYFVAELAA 914
Query: 442 MNIAPRLMVV 451
MNI +L VV
Sbjct: 915 MNIKVKLDVV 924
Score = 166 (63.5 bits), Expect = 1.6e-39, Sum P(2) = 1.6e-39
Identities = 58/182 (31%), Positives = 84/182 (46%)
Query: 78 EYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR-SVFFRSYKDAESK-RI 135
+Y P G N+IVA++ YTGY+ ED++I+N ++ ERG+ SV+ + D K +
Sbjct: 517 DYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQ 576
Query: 136 GDQEEQFE-KPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENEDELE 194
GD F KP + KLDDDG+ G ++ D + L E +
Sbjct: 577 GDSSLVFGIKPGDPR-------VLQKLDDDGLPFIGAKLQYGDPYYSY-LNLNTGESFV- 627
Query: 195 GTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQ 254
+ K + + N + D +K I +R R P IGDKFASRHGQ
Sbjct: 628 ----MYYKSKENCVVDNIKVCSNDT-----GSGKFKCVCITMRVPRNPTIGDKFASRHGQ 678
Query: 255 KG 256
KG
Sbjct: 679 KG 680
Score = 138 (53.6 bits), Expect = 1.4e-36, Sum P(2) = 1.4e-36
Identities = 28/79 (35%), Positives = 42/79 (53%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
MG + + R D + L P PLV +Y P G N+IVA++ YTGY+ ED
Sbjct: 485 MGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMED 544
Query: 61 SVILNASAVERGYFRSMEY 79
++I+N ++ ERG+ Y
Sbjct: 545 AMIVNKASWERGFAHGSVY 563
>UNIPROTKB|F8W898 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007647
InterPro:IPR009674 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04567
Pfam:PF06883 PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 EMBL:AC012442 GO:GO:0003899
GO:GO:0032549 Gene3D:2.40.270.10 HGNC:HGNC:20454 Gene3D:2.40.50.150
IPI:IPI00916790 ProteinModelPortal:F8W898 SMR:F8W898
Ensembl:ENST00000409894 UCSC:uc010fko.2 ArrayExpress:F8W898
Bgee:F8W898 Uniprot:F8W898
Length = 952
Score = 318 (117.0 bits), Expect = 1.8e-39, Sum P(2) = 1.8e-39
Identities = 71/190 (37%), Positives = 100/190 (52%)
Query: 275 DATPF---NDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQRLKHM 331
DATPF + ++ +L+ GY G E +++G +G ++ A +F+G YYQRL+HM
Sbjct: 763 DATPFIFSEENSALEYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHM 822
Query: 332 VDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPY 391
V DK R G + QP+ GR GG+RFGEMERD ++HG + L +RLF SD
Sbjct: 823 VSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRS 882
Query: 392 RIHVCNFCGLI----------AIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMS 441
HVC CG + + + MRN + C C I V +PY + EL +
Sbjct: 883 VAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYNCTLCSRSDTIDTVSVPYVFRYFVAELAA 942
Query: 442 MNIAPRLMVV 451
MNI +L VV
Sbjct: 943 MNIKVKLDVV 952
Score = 166 (63.5 bits), Expect = 1.8e-39, Sum P(2) = 1.8e-39
Identities = 58/182 (31%), Positives = 84/182 (46%)
Query: 78 EYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR-SVFFRSYKDAESK-RI 135
+Y P G N+IVA++ YTGY+ ED++I+N ++ ERG+ SV+ + D K +
Sbjct: 545 DYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQ 604
Query: 136 GDQEEQFE-KPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENEDELE 194
GD F KP + KLDDDG+ G ++ D + L E +
Sbjct: 605 GDSSLVFGIKPGDPR-------VLQKLDDDGLPFIGAKLQYGDPYYSY-LNLNTGESFV- 655
Query: 195 GTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQ 254
+ K + + N + D +K I +R R P IGDKFASRHGQ
Sbjct: 656 ----MYYKSKENCVVDNIKVCSNDT-----GSGKFKCVCITMRVPRNPTIGDKFASRHGQ 706
Query: 255 KG 256
KG
Sbjct: 707 KG 708
Score = 138 (53.6 bits), Expect = 1.6e-36, Sum P(2) = 1.6e-36
Identities = 28/79 (35%), Positives = 42/79 (53%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
MG + + R D + L P PLV +Y P G N+IVA++ YTGY+ ED
Sbjct: 513 MGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMED 572
Query: 61 SVILNASAVERGYFRSMEY 79
++I+N ++ ERG+ Y
Sbjct: 573 AMIVNKASWERGFAHGSVY 591
>UNIPROTKB|Q9H9Y6 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase I subunit RPA2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=IEA] [GO:0007566 "embryo
implantation" evidence=IEA] [GO:0009303 "rRNA transcription"
evidence=IEA] [GO:0009790 "embryo development" evidence=IEA]
[GO:0017126 "nucleologenesis" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006360 "transcription from RNA polymerase I promoter"
evidence=TAS] [GO:0006361 "transcription initiation from RNA
polymerase I promoter" evidence=TAS] [GO:0006362 "transcription
elongation from RNA polymerase I promoter" evidence=TAS]
[GO:0006363 "termination of RNA polymerase I transcription"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] Reactome:REACT_71 InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007647
InterPro:IPR009674 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04567 Pfam:PF06883 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0046872
GO:GO:0003677 GO:GO:0009790 GO:GO:0009303 GO:GO:0007566
Reactome:REACT_1788 GO:GO:0006363 GO:GO:0006362 GO:GO:0006361
EMBL:AC012442 GO:GO:0005736 GO:GO:0003899 eggNOG:COG0085 KO:K03002
GO:GO:0032549 Gene3D:2.40.270.10 EMBL:AK022533 EMBL:AK022890
EMBL:AK128044 IPI:IPI00026445 IPI:IPI01010348 RefSeq:NP_001131076.1
RefSeq:NP_061887.2 UniGene:Hs.741552 ProteinModelPortal:Q9H9Y6
SMR:Q9H9Y6 DIP:DIP-27538N IntAct:Q9H9Y6 MINT:MINT-4727878
STRING:Q9H9Y6 PhosphoSite:Q9H9Y6 DMDM:92090637 SWISS-2DPAGE:Q9H9Y6
PaxDb:Q9H9Y6 PRIDE:Q9H9Y6 Ensembl:ENST00000263331
Ensembl:ENST00000417433 GeneID:84172 KEGG:hsa:84172 UCSC:uc002thw.2
UCSC:uc010fkn.2 CTD:84172 GeneCards:GC02P113299 H-InvDB:HIX0002380
HGNC:HGNC:20454 HPA:HPA037528 MIM:602000 neXtProt:NX_Q9H9Y6
PharmGKB:PA130601182 HOVERGEN:HBG017742 InParanoid:Q9H9Y6
OrthoDB:EOG4H9XJP PhylomeDB:Q9H9Y6 GenomeRNAi:84172 NextBio:73536
ArrayExpress:Q9H9Y6 Bgee:Q9H9Y6 CleanEx:HS_POLR1B
Genevestigator:Q9H9Y6 GermOnline:ENSG00000125630 GO:GO:0017126
Gene3D:2.40.50.150 Uniprot:Q9H9Y6
Length = 1135
Score = 318 (117.0 bits), Expect = 3.3e-39, Sum P(2) = 3.3e-39
Identities = 71/190 (37%), Positives = 100/190 (52%)
Query: 275 DATPF---NDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQRLKHM 331
DATPF + ++ +L+ GY G E +++G +G ++ A +F+G YYQRL+HM
Sbjct: 946 DATPFIFSEENSALEYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHM 1005
Query: 332 VDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPY 391
V DK R G + QP+ GR GG+RFGEMERD ++HG + L +RLF SD
Sbjct: 1006 VSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRS 1065
Query: 392 RIHVCNFCGLI----------AIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMS 441
HVC CG + + + MRN + C C I V +PY + EL +
Sbjct: 1066 VAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYNCTLCSRSDTIDTVSVPYVFRYFVAELAA 1125
Query: 442 MNIAPRLMVV 451
MNI +L VV
Sbjct: 1126 MNIKVKLDVV 1135
Score = 166 (63.5 bits), Expect = 3.3e-39, Sum P(2) = 3.3e-39
Identities = 58/182 (31%), Positives = 84/182 (46%)
Query: 78 EYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR-SVFFRSYKDAESK-RI 135
+Y P G N+IVA++ YTGY+ ED++I+N ++ ERG+ SV+ + D K +
Sbjct: 728 DYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQ 787
Query: 136 GDQEEQFE-KPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENEDELE 194
GD F KP + KLDDDG+ G ++ D + L E +
Sbjct: 788 GDSSLVFGIKPGDPR-------VLQKLDDDGLPFIGAKLQYGDPYYSY-LNLNTGESFV- 838
Query: 195 GTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQ 254
+ K + + N + D +K I +R R P IGDKFASRHGQ
Sbjct: 839 ----MYYKSKENCVVDNIKVCSNDT-----GSGKFKCVCITMRVPRNPTIGDKFASRHGQ 889
Query: 255 KG 256
KG
Sbjct: 890 KG 891
Score = 138 (53.6 bits), Expect = 2.8e-36, Sum P(2) = 2.8e-36
Identities = 28/79 (35%), Positives = 42/79 (53%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
MG + + R D + L P PLV +Y P G N+IVA++ YTGY+ ED
Sbjct: 696 MGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMED 755
Query: 61 SVILNASAVERGYFRSMEY 79
++I+N ++ ERG+ Y
Sbjct: 756 AMIVNKASWERGFAHGSVY 774
>UNIPROTKB|F5GZX4 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR007647 InterPro:IPR009674 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04567 Pfam:PF06883 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0005737 GO:GO:0005730 GO:GO:0003677
GO:GO:0006351 EMBL:AC012442 GO:GO:0003899 OMA:EVFAGVT GO:GO:0032549
Gene3D:2.40.270.10 HGNC:HGNC:20454 Gene3D:2.40.50.150
IPI:IPI00418797 Ensembl:ENST00000541869 ArrayExpress:F5GZX4
Bgee:F5GZX4 Uniprot:F5GZX4
Length = 1173
Score = 318 (117.0 bits), Expect = 3.6e-39, Sum P(2) = 3.6e-39
Identities = 71/190 (37%), Positives = 100/190 (52%)
Query: 275 DATPF---NDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQRLKHM 331
DATPF + ++ +L+ GY G E +++G +G ++ A +F+G YYQRL+HM
Sbjct: 984 DATPFIFSEENSALEYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHM 1043
Query: 332 VDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPY 391
V DK R G + QP+ GR GG+RFGEMERD ++HG + L +RLF SD
Sbjct: 1044 VSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRS 1103
Query: 392 RIHVCNFCGLI----------AIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMS 441
HVC CG + + + MRN + C C I V +PY + EL +
Sbjct: 1104 VAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYNCTLCSRSDTIDTVSVPYVFRYFVAELAA 1163
Query: 442 MNIAPRLMVV 451
MNI +L VV
Sbjct: 1164 MNIKVKLDVV 1173
Score = 166 (63.5 bits), Expect = 3.6e-39, Sum P(2) = 3.6e-39
Identities = 58/182 (31%), Positives = 84/182 (46%)
Query: 78 EYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR-SVFFRSYKDAESK-RI 135
+Y P G N+IVA++ YTGY+ ED++I+N ++ ERG+ SV+ + D K +
Sbjct: 766 DYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQ 825
Query: 136 GDQEEQFE-KPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENEDELE 194
GD F KP + KLDDDG+ G ++ D + L E +
Sbjct: 826 GDSSLVFGIKPGDPR-------VLQKLDDDGLPFIGAKLQYGDPYYSY-LNLNTGESFV- 876
Query: 195 GTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQ 254
+ K + + N + D +K I +R R P IGDKFASRHGQ
Sbjct: 877 ----MYYKSKENCVVDNIKVCSNDT-----GSGKFKCVCITMRVPRNPTIGDKFASRHGQ 927
Query: 255 KG 256
KG
Sbjct: 928 KG 929
Score = 138 (53.6 bits), Expect = 3.1e-36, Sum P(2) = 3.1e-36
Identities = 28/79 (35%), Positives = 42/79 (53%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
MG + + R D + L P PLV +Y P G N+IVA++ YTGY+ ED
Sbjct: 734 MGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMED 793
Query: 61 SVILNASAVERGYFRSMEY 79
++I+N ++ ERG+ Y
Sbjct: 794 AMIVNKASWERGFAHGSVY 812
>CGD|CAL0002109 [details] [associations]
symbol:RPA135 species:5476 "Candida albicans" [GO:0005736
"DNA-directed RNA polymerase I complex" evidence=IEA] [GO:0042790
"transcription of nuclear large rRNA transcript from RNA polymerase
I promoter" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007647 InterPro:IPR009674
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04567 Pfam:PF06883
PROSITE:PS01166 CGD:CAL0002109 PANTHER:PTHR20856 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 EMBL:AACQ01000024 GO:GO:0003899
eggNOG:COG0085 KO:K03002 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 RefSeq:XP_720354.1 RefSeq:XP_888689.1
STRING:Q5AFK6 GeneID:3637996 GeneID:3704205 KEGG:cal:CaO19.7062
KEGG:cal:CaO19_7062 Uniprot:Q5AFK6
Length = 1166
Score = 290 (107.1 bits), Expect = 4.8e-39, Sum P(3) = 4.8e-39
Identities = 58/131 (44%), Positives = 78/131 (59%)
Query: 275 DATP--FNDA-VNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQRLKHM 331
D+TP FN+ L + GY GNE M++G TG ++ +++G YYQRL+HM
Sbjct: 954 DSTPWKFNEQDTPADYFGEQLLKAGYNYHGNEPMYSGATGEELRCDIYIGCVYYQRLRHM 1013
Query: 332 VDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPY 391
V+DK R+ GPV L QP++GR R GG+R GEMERD I HG + L++RL SD
Sbjct: 1014 VNDKFQVRSTGPVNSLTMQPVKGRKRSGGIRVGEMERDALIGHGTSFLLQDRLLNCSDYT 1073
Query: 392 RIHVCNFCGLI 402
+ VC CG I
Sbjct: 1074 QTPVCRSCGSI 1084
Score = 202 (76.2 bits), Expect = 4.8e-39, Sum P(3) = 4.8e-39
Identities = 62/185 (33%), Positives = 99/185 (53%)
Query: 86 PAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFRSYK-D-AESKRIGDQEEQ-F 142
P G+N+IVA++ YTGY+ +D++I+N SA ERG+ +++ K D ++S+R GD Q F
Sbjct: 741 PNGMNAIVAVISYTGYDMDDAMIINKSADERGFGYGTVYKTEKVDLSQSRRRGDPITQHF 800
Query: 143 EKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENEDELEGTTKRFSK 202
+ + + + +KLD DG+ G++V D ++ D+ G TK
Sbjct: 801 GFGSDEWPEAWK----EKLDADGLPLIGVKVEEGDPIVAYY-------DDTLGKTKV--- 846
Query: 203 RDGSTFLRNSETGIVDQVMLT---LNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCG 259
T+ +SE +++V L N + I+ R R P IGDKF+SRHGQKG C
Sbjct: 847 ---KTY-HSSEPAYIEEVKLLGDDSNEQEGQQITIKYRITRQPLIGDKFSSRHGQKGVCS 902
Query: 260 IQYRQ 264
++ Q
Sbjct: 903 RKWPQ 907
Score = 114 (45.2 bits), Expect = 6.6e-30, Sum P(3) = 6.6e-30
Identities = 26/73 (35%), Positives = 39/73 (53%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
MG T R D + L P+V + P G+N+IVA++ YTGY+ +D
Sbjct: 701 MGTPGTALVHRSDNKLYRLQTGQTPIVKANLYDDYGMDNFPNGMNAIVAVISYTGYDMDD 760
Query: 61 SVILNASAVERGY 73
++I+N SA ERG+
Sbjct: 761 AMIINKSADERGF 773
Score = 40 (19.1 bits), Expect = 4.8e-39, Sum P(3) = 4.8e-39
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 426 VRLPYAAKLLFQELMSMNIAPRLMV 450
V +P+ K L EL +M I R V
Sbjct: 1139 VAIPFVLKYLDSELSAMGIKMRYNV 1163
>MGI|MGI:108014 [details] [associations]
symbol:Polr1b "polymerase (RNA) I polypeptide B"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005736 "DNA-directed RNA polymerase I complex"
evidence=ISO;IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0007566 "embryo implantation" evidence=IMP]
[GO:0009303 "rRNA transcription" evidence=ISO;IMP] [GO:0009790
"embryo development" evidence=IMP] [GO:0016740 "transferase
activity" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0017126 "nucleologenesis" evidence=IMP]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] Reactome:REACT_78136
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR009674 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF06883 PROSITE:PS01166 MGI:MGI:108014 PANTHER:PTHR20856
GO:GO:0005737 GO:GO:0005654 GO:GO:0046872 GO:GO:0003677
EMBL:CH466519 GO:GO:0009790 GO:GO:0009303 GO:GO:0007566
GO:GO:0005736 GO:GO:0003899 CleanEx:MM_RPA2 Reactome:REACT_86751
eggNOG:COG0085 KO:K03002 OMA:EVFAGVT GO:GO:0032549
Gene3D:2.40.270.10 GeneTree:ENSGT00550000074993 CTD:84172
HOVERGEN:HBG017742 OrthoDB:EOG4H9XJP GO:GO:0017126
Gene3D:2.40.50.150 EMBL:U58280 EMBL:AK143501 EMBL:AK144616
EMBL:AL833780 EMBL:BX000699 IPI:IPI00112769 PIR:T42723
RefSeq:NP_033112.2 UniGene:Mm.259078 ProteinModelPortal:P70700
STRING:P70700 PhosphoSite:P70700 PaxDb:P70700 PRIDE:P70700
Ensembl:ENSMUST00000103205 GeneID:20017 KEGG:mmu:20017
HOGENOM:HOG000222963 InParanoid:Q3UMX7 NextBio:297521 Bgee:P70700
Genevestigator:P70700 GermOnline:ENSMUSG00000027395 Uniprot:P70700
Length = 1135
Score = 315 (115.9 bits), Expect = 5.2e-39, Sum P(2) = 5.2e-39
Identities = 69/190 (36%), Positives = 100/190 (52%)
Query: 275 DATPF---NDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQRLKHM 331
DATPF + ++ +L+ GY G E +++G +G ++ A +F+G YYQRL+HM
Sbjct: 946 DATPFIFSEENSALEYFGEMLKAAGYNFYGTERLYSGISGMELEADIFIGVVYYQRLRHM 1005
Query: 332 VDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPY 391
V DK R G + QP+ GR GG+RFGEMERD ++HG + L +RLF SD
Sbjct: 1006 VSDKFQVRTTGARDKVTNQPLGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRS 1065
Query: 392 RIHVCNFCGLI----------AIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMS 441
H+C CG + + + MRN + C C I V +PY + EL +
Sbjct: 1066 VAHMCVECGSLLSPLLEKPPPSWSAMRNRKYNCTVCGRSDTIDTVSVPYVFRYFVAELAA 1125
Query: 442 MNIAPRLMVV 451
MNI +L V+
Sbjct: 1126 MNIKVKLDVI 1135
Score = 169 (64.5 bits), Expect = 5.2e-39, Sum P(2) = 5.2e-39
Identities = 54/174 (31%), Positives = 83/174 (47%)
Query: 86 PAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFRSYKDAESKRIGDQEEQFEKP 145
P G N+IVA++ YTGY+ ED++I+N ++ ERG+ ++S D E+F++
Sbjct: 736 PIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKS-------EFIDLSEKFKQG 788
Query: 146 NRQTCQGMRNA---IYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENEDELEGTTKRFSK 202
G++ + KLDDDG+ G ++ D N + EG +
Sbjct: 789 EDNLVFGVKPGDPRVMQKLDDDGLPFIGAKLEYGDPYYSYL-----NLNTGEGFVVYYKS 843
Query: 203 RDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 256
++ + N + D + +K I VR R P IGDKFASRHGQKG
Sbjct: 844 KENCV-VDNIKVCSND-----MGSGKFKCICITVRIPRNPTIGDKFASRHGQKG 891
Score = 132 (51.5 bits), Expect = 4.0e-35, Sum P(2) = 4.0e-35
Identities = 27/79 (34%), Positives = 42/79 (53%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
MG + + R D + L P PLV ++ P G N+IVA++ YTGY+ ED
Sbjct: 696 MGFPLLTYQNRSDNKLYRLQTPQSPLVRPCMYDFYDMDNYPIGTNAIVAVISYTGYDMED 755
Query: 61 SVILNASAVERGYFRSMEY 79
++I+N ++ ERG+ Y
Sbjct: 756 AMIVNKASWERGFAHGSVY 774
>UNIPROTKB|F1SUA2 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase" species:9823
"Sus scrofa" [GO:0017126 "nucleologenesis" evidence=IEA]
[GO:0009790 "embryo development" evidence=IEA] [GO:0009303 "rRNA
transcription" evidence=IEA] [GO:0007566 "embryo implantation"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005736
"DNA-directed RNA polymerase I complex" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007647 InterPro:IPR009674
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04567 Pfam:PF06883 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0005737 GO:GO:0003677 GO:GO:0009790
GO:GO:0009303 GO:GO:0007566 GO:GO:0005736 GO:GO:0003899 OMA:EVFAGVT
GO:GO:0032549 Gene3D:2.40.270.10 GeneTree:ENSGT00550000074993
GO:GO:0017126 EMBL:CU856034 Ensembl:ENSSSCT00000008871
Uniprot:F1SUA2
Length = 1172
Score = 316 (116.3 bits), Expect = 1.6e-38, Sum P(2) = 1.6e-38
Identities = 69/190 (36%), Positives = 100/190 (52%)
Query: 275 DATPF---NDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQRLKHM 331
DATPF + ++ +L+ GY G E +++G +G ++ A +F+G YYQRL+HM
Sbjct: 983 DATPFIFSEENSALEYFGEMLKAAGYNYYGTERLYSGISGLELEADIFIGVVYYQRLRHM 1042
Query: 332 VDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPY 391
V DK R G + QP+ GR GG+RFGEMERD ++HG + L +RLF SD
Sbjct: 1043 VSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRS 1102
Query: 392 RIHVCNFCGLI----------AIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMS 441
HVC CG + + + MRN + C C I V +PY + EL +
Sbjct: 1103 VAHVCVKCGSLLSPLLEKPPPSWSAMRNRKYSCSLCNRSDTIDTVSVPYVFRYFVAELAA 1162
Query: 442 MNIAPRLMVV 451
MNI +L ++
Sbjct: 1163 MNIKVKLDII 1172
Score = 163 (62.4 bits), Expect = 1.6e-38, Sum P(2) = 1.6e-38
Identities = 58/182 (31%), Positives = 84/182 (46%)
Query: 78 EYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR-SVFFRSYKDAESK-RI 135
+Y P G N+IVA++ YTGY+ ED++ILN ++ ERG+ SV+ + D K +
Sbjct: 765 DYYDMDNYPIGTNAIVAVISYTGYDMEDAMILNKASWERGFAHGSVYKSEFIDLSEKIKQ 824
Query: 136 GDQEEQFE-KPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENEDELE 194
GD F +P + KLDDDG+ G ++ D + L E +
Sbjct: 825 GDDSLVFGVRPGDPR-------VAQKLDDDGLPFVGAQLQYGDPYYSY-LNLNTGESFVV 876
Query: 195 GTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQ 254
+ K + + N + D +K I +R R P IGDKFASRHGQ
Sbjct: 877 -----YYKSKENCIVDNIKVCGNDT-----GSGRFKCVCITMRVPRNPTIGDKFASRHGQ 926
Query: 255 KG 256
KG
Sbjct: 927 KG 928
Score = 142 (55.0 bits), Expect = 2.6e-36, Sum P(2) = 2.6e-36
Identities = 30/79 (37%), Positives = 42/79 (53%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
MG + F R D + L P PLV +Y P G N+IVA++ YTGY+ ED
Sbjct: 733 MGFPLLTFKDRSDNKLYRLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVAVISYTGYDMED 792
Query: 61 SVILNASAVERGYFRSMEY 79
++ILN ++ ERG+ Y
Sbjct: 793 AMILNKASWERGFAHGSVY 811
>UNIPROTKB|A6QLS0 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase" species:9913
"Bos taurus" [GO:0017126 "nucleologenesis" evidence=IEA]
[GO:0009790 "embryo development" evidence=IEA] [GO:0009303 "rRNA
transcription" evidence=IEA] [GO:0007566 "embryo implantation"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005736
"DNA-directed RNA polymerase I complex" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007647 InterPro:IPR009674
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF04567 Pfam:PF06883
PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005737 GO:GO:0003677
GO:GO:0009790 GO:GO:0009303 GO:GO:0007566 GO:GO:0005736
GO:GO:0003899 eggNOG:COG0085 KO:K03002 OMA:EVFAGVT GO:GO:0032549
Gene3D:2.40.270.10 GeneTree:ENSGT00550000074993 CTD:84172
HOVERGEN:HBG017742 OrthoDB:EOG4H9XJP GO:GO:0017126
Gene3D:2.40.50.150 HOGENOM:HOG000222963 EMBL:DAAA02031075
EMBL:BC148064 IPI:IPI00708666 RefSeq:NP_001093762.1
UniGene:Bt.13051 STRING:A6QLS0 Ensembl:ENSBTAT00000018830
GeneID:282342 KEGG:bta:282342 InParanoid:A6QLS0 NextBio:20806137
Uniprot:A6QLS0
Length = 1135
Score = 312 (114.9 bits), Expect = 3.1e-38, Sum P(2) = 3.1e-38
Identities = 69/190 (36%), Positives = 100/190 (52%)
Query: 275 DATPF---NDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQRLKHM 331
DATPF + ++ +L+ GY G E +++G +G ++ A +F+G YYQRL+HM
Sbjct: 946 DATPFIFSEENSALEYFGEMLKAAGYNYYGTERLYSGISGLELEADIFIGVVYYQRLRHM 1005
Query: 332 VDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPY 391
V DK R G + QP+ GR GG+RFGEMERD ++HG + L +RLF SD
Sbjct: 1006 VSDKFQVRTTGARDKVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRS 1065
Query: 392 RIHVCNFCGLI----------AIANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMS 441
HVC CG + + + +RN + C C I + LPY + EL +
Sbjct: 1066 VAHVCVKCGSLLSPLLEKPPPSWSALRNRKYICALCNRSDTIDTISLPYVFRYFVAELAA 1125
Query: 442 MNIAPRLMVV 451
MNI +L +V
Sbjct: 1126 MNIKVKLDIV 1135
Score = 166 (63.5 bits), Expect = 3.1e-38, Sum P(2) = 3.1e-38
Identities = 59/183 (32%), Positives = 87/183 (47%)
Query: 78 EYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR-SVFFRSYKDAESKRI- 135
+Y P G N+IVA++ YTGY+ ED++I+N ++ ERG+ SV+ + D S+RI
Sbjct: 728 DYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDL-SERIK 786
Query: 136 -GDQEEQFE-KPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENEDEL 193
GD F KP + KLD+DG+ G ++ D N +
Sbjct: 787 QGDDSLVFGVKPGDPR-------VLQKLDNDGLPFIGAQLKYGDPYYSYL-----NLNTG 834
Query: 194 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 253
EG + ++ + + N + D +K I +R R P IGDKFASRHG
Sbjct: 835 EGFVMYYKSKE-NCIVDNIKVCSNDT-----GTGKFKCVCITMRVPRNPTIGDKFASRHG 888
Query: 254 QKG 256
QKG
Sbjct: 889 QKG 891
Score = 140 (54.3 bits), Expect = 1.6e-35, Sum P(2) = 1.6e-35
Identities = 29/79 (36%), Positives = 42/79 (53%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
MG + F R D + L P PLV +Y P G N+IVA++ YTGY+ ED
Sbjct: 696 MGFPLLTFQDRSDNKLYRLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVAVISYTGYDMED 755
Query: 61 SVILNASAVERGYFRSMEY 79
++I+N ++ ERG+ Y
Sbjct: 756 AMIVNKASWERGFAHGSVY 774
>SGD|S000006214 [details] [associations]
symbol:RPA135 "RNA polymerase I second largest subunit A135"
species:4932 "Saccharomyces cerevisiae" [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0042790
"transcription of nuclear large rRNA transcript from RNA polymerase
I promoter" evidence=IGI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005736 "DNA-directed
RNA polymerase I complex" evidence=IDA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA;IDA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR007647
InterPro:IPR009674 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF04567 Pfam:PF06883 PROSITE:PS01166 SGD:S000006214
PANTHER:PTHR20856 GO:GO:0046872 GO:GO:0003677 EMBL:Z71255
EMBL:U31900 EMBL:BK006949 EMBL:Z49919 GO:GO:0005736 GO:GO:0003899
GO:GO:0042790 eggNOG:COG0085 KO:K03002 GO:GO:0032549
Gene3D:2.40.270.10 GeneTree:ENSGT00550000074993 Gene3D:2.40.50.150
HOGENOM:HOG000222963 OrthoDB:EOG4W11N4 EMBL:M62804 PIR:A39607
RefSeq:NP_015335.1 ProteinModelPortal:P22138 DIP:DIP-135N
IntAct:P22138 MINT:MINT-423299 STRING:P22138 PaxDb:P22138
PeptideAtlas:P22138 EnsemblFungi:YPR010C GeneID:856119
KEGG:sce:YPR010C CYGD:YPR010c OMA:FNLLIFM NextBio:981198
Genevestigator:P22138 GermOnline:YPR010C Uniprot:P22138
Length = 1203
Score = 296 (109.3 bits), Expect = 3.8e-38, Sum P(3) = 3.8e-38
Identities = 60/131 (45%), Positives = 79/131 (60%)
Query: 275 DATP--FN-DAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQRLKHM 331
D+TP FN D L + GY GNE M++G TG ++ A +++G YYQRL+HM
Sbjct: 980 DSTPWIFNEDDTPADYFGEQLAKAGYNYHGNEPMYSGATGEELRADIYVGVVYYQRLRHM 1039
Query: 332 VDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPY 391
V+DK R+ GPV L QP++GR R GG+R GEMERD I HG + L++RL SD
Sbjct: 1040 VNDKFQVRSTGPVNSLTMQPVKGRKRHGGIRVGEMERDALIGHGTSFLLQDRLLNSSDYT 1099
Query: 392 RIHVCNFCGLI 402
+ VC CG I
Sbjct: 1100 QASVCRECGSI 1110
Score = 186 (70.5 bits), Expect = 3.8e-38, Sum P(3) = 3.8e-38
Identities = 60/181 (33%), Positives = 95/181 (52%)
Query: 86 PAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFRSYK-D-AESKRIGDQEEQ-F 142
P G N++VA++ YTGY+ +D++I+N SA ERG+ +++ K D A ++ GD Q F
Sbjct: 766 PNGFNAVVAVISYTGYDMDDAMIINKSADERGFGYGTMYKTEKVDLALNRNRGDPITQHF 825
Query: 143 EKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENEDELEGTTKRFSK 202
N + + +KLD+DG+ G V D + +D L T +
Sbjct: 826 GFGNDEWPKEW----LEKLDEDGLPYIGTYVEEGDPICAYF------DDTLNKTKIK--- 872
Query: 203 RDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSV-----RIPQIGDKFASRHGQKGT 257
T+ +SE +++V L + + KF +++ S+ R PQIGDKF+SRHGQKG
Sbjct: 873 ----TY-HSSEPAYIEEVNL-IGDESNKFQELQTVSIKYRIRRTPQIGDKFSSRHGQKGV 926
Query: 258 C 258
C
Sbjct: 927 C 927
Score = 111 (44.1 bits), Expect = 2.3e-30, Sum P(3) = 2.3e-30
Identities = 22/63 (34%), Positives = 35/63 (55%)
Query: 11 RMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVE 70
R D + L P+V + P G N++VA++ YTGY+ +D++I+N SA E
Sbjct: 736 RSDNKLYRLQTGQTPIVKANLYDDYGMDNFPNGFNAVVAVISYTGYDMDDAMIINKSADE 795
Query: 71 RGY 73
RG+
Sbjct: 796 RGF 798
Score = 40 (19.1 bits), Expect = 3.8e-38, Sum P(3) = 3.8e-38
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 422 QISQVRLPYAAKLLFQELMSMNIAPRLMV 450
+ + V +P+ K L EL +M I R V
Sbjct: 1172 ETTTVAIPFVLKYLDSELSAMGIRLRYNV 1200
>ASPGD|ASPL0000012082 [details] [associations]
symbol:AN3933 species:162425 "Emericella nidulans"
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR009674 InterPro:IPR014724 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF06883 PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 EMBL:BN001302 EMBL:AACD01000064
GO:GO:0003899 eggNOG:COG0085 KO:K03002 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 HOGENOM:HOG000222963
OrthoDB:EOG4W11N4 OMA:FNLLIFM RefSeq:XP_661537.1 STRING:Q5B697
EnsemblFungi:CADANIAT00004761 GeneID:2873357 KEGG:ani:AN3933.2
Uniprot:Q5B697
Length = 1231
Score = 297 (109.6 bits), Expect = 1.5e-37, Sum P(2) = 1.5e-37
Identities = 59/133 (44%), Positives = 79/133 (59%)
Query: 271 GEIGDATPFN---DAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQR 327
G D TPF + L+ GY GNE +++G TG++ A +F+G +YQR
Sbjct: 1000 GHPQDCTPFQFSEEYTATDYFGEQLRRAGYNYYGNEPLYSGITGKEFAADIFIGVVHYQR 1059
Query: 328 LKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEV 387
L+HMV+DK R GPV L QP++GRA+ GG+R GEMERD I+HGAA L++RL
Sbjct: 1060 LRHMVNDKFQVRTTGPVNNLTGQPVKGRAKGGGIRVGEMERDSLIAHGAAYILQDRLMNC 1119
Query: 388 SDPYRIHVCNFCG 400
SD R +C CG
Sbjct: 1120 SDSQRAWICRDCG 1132
Score = 180 (68.4 bits), Expect = 1.5e-37, Sum P(2) = 1.5e-37
Identities = 55/183 (30%), Positives = 96/183 (52%)
Query: 86 PAGINSIVAILCYTGYNQEDSVILNASAVERGY-FRSVF---FRSYKDAESKRIGDQEEQ 141
P G N++VAI+ YTGY+ +D++I+N S+ ERG+ + +V+ S + +S+R ++
Sbjct: 775 PNGTNAVVAIISYTGYDMDDAMIINKSSHERGFGYGTVYKTKVHSLDEKDSRRTKSKQAV 834
Query: 142 FEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENEDELEGTTKRFS 201
+ +R LD+DG P + G ++ G +I + + T+ +
Sbjct: 835 QKLFGFAPGSEIRAEWRATLDEDGF--PHI---GAEIKEG-SIVAAYHTVRYDATSDSYI 888
Query: 202 KRDGST-FLR--NSETGIVDQVMLTLNVDGYKFCK---IRVRSVRIPQIGDKFASRHGQK 255
DG T F++ +SE +D + + + G + + ++ R R P IGDKF+SRHGQK
Sbjct: 889 NVDGITHFVKYKDSERAYIDSIRIMGSETGTEPAQAISVKYRIPRKPIIGDKFSSRHGQK 948
Query: 256 GTC 258
G C
Sbjct: 949 GVC 951
Score = 109 (43.4 bits), Expect = 4.3e-30, Sum P(2) = 4.3e-30
Identities = 25/73 (34%), Positives = 37/73 (50%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
MG T R D + L P+V P G N++VAI+ YTGY+ +D
Sbjct: 735 MGTPGTAIDYRTDNKLYRLQTGQTPIVRPPLYNAYGLDNFPNGTNAVVAIISYTGYDMDD 794
Query: 61 SVILNASAVERGY 73
++I+N S+ ERG+
Sbjct: 795 AMIINKSSHERGF 807
Score = 43 (20.2 bits), Expect = 3.4e-23, Sum P(2) = 3.4e-23
Identities = 12/50 (24%), Positives = 24/50 (48%)
Query: 155 NAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENEDELEGTTKRFSKRD 204
NA+++K GII GL+ G + + + E + + +R +R+
Sbjct: 48 NALFEK---GGIIEAGLKDIGTRTFLDEVVETAEQKQQRLAEGRRAPRRN 94
>GENEDB_PFALCIPARUM|PF11_0358 [details] [associations]
symbol:PF11_0358 "DNA-directed RNA polymerase,
beta subunit, putative" species:5833 "Plasmodium falciparum"
[GO:0005736 "DNA-directed RNA polymerase I complex" evidence=ISS]
[GO:0006360 "transcription from RNA polymerase I promoter"
evidence=ISS] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04563
Pfam:PF04565 PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0003677
EMBL:AE014186 GO:GO:0006360 GO:GO:0005736 GO:GO:0003899 KO:K03002
GO:GO:0032549 Gene3D:2.40.270.10 RefSeq:XP_001348029.1
ProteinModelPortal:Q8II17 EnsemblProtists:PF11_0358:mRNA
GeneID:810905 KEGG:pfa:PF11_0358 EuPathDB:PlasmoDB:PF3D7_1134700
HOGENOM:HOG000282443 OMA:ENINIDM ProtClustDB:CLSZ2433354
Uniprot:Q8II17
Length = 1517
Score = 277 (102.6 bits), Expect = 3.0e-36, Sum P(2) = 3.0e-36
Identities = 66/180 (36%), Positives = 92/180 (51%)
Query: 285 VQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPV 344
+ + LL GY G E++++G G + A +F+G YYQRL+HM DK R GPV
Sbjct: 1328 IDYFAKLLLNKGYDYYGTELLYSGIYGVPLQAHIFIGVIYYQRLRHMAYDKAQVRRTGPV 1387
Query: 345 QILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNFCGLIAI 404
L QP++G+ + GG+R GEMERD ISHG + + ER SD + VC CGLI
Sbjct: 1388 CNLTHQPLKGKRKHGGIRVGEMERDGIISHGCSFVINERFLMSSDGHECFVCPKCGLILS 1447
Query: 405 ANMRNNTFE----------------CKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRL 448
M+ NT CK C +I + +PY + L EL+ +N+ RL
Sbjct: 1448 PIMQFNTTGKIMKGRSIGGKSKMAVCKSCDVSCKI--IFIPYVIRYLLNELICLNVTIRL 1505
Score = 194 (73.4 bits), Expect = 3.0e-36, Sum P(2) = 3.0e-36
Identities = 58/194 (29%), Positives = 94/194 (48%)
Query: 75 RSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFRSYKDAESKR 134
R E+ P+G N++VAIL YTGY+ ED++I+N ++ +RG FR+ +++ + + ++
Sbjct: 999 RDYEFYGVDNFPSGTNAVVAILAYTGYDMEDALIINKASADRGIFRTHIYKT-EFIDLQK 1057
Query: 135 IGDQEE-QFEKPNRQTCQGMRNAIYDKLDDDG--IIAPGLRVSGDDVVIGKTITLPENED 191
+G+ F R N ++ G + GL + G + N+
Sbjct: 1058 VGESSNFVFGNNIRYLNNNKNNNKNLAYENKGKFLNKDGLPCVQQKITEGSPLYSYINKG 1117
Query: 192 ELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASR 251
E TT + G F VD V + N + + +++RS R PQ+GDKFASR
Sbjct: 1118 N-ELTTYESFRNHGEYF--------VDFVSIGKN-NSNQVAVVKLRSTRQPQVGDKFASR 1167
Query: 252 HGQKGTCGIQYRQE 265
HGQKG + QE
Sbjct: 1168 HGQKGVVSRLFPQE 1181
Score = 149 (57.5 bits), Expect = 1.6e-31, Sum P(2) = 1.6e-31
Identities = 30/79 (37%), Positives = 45/79 (56%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
MG+ N + + P PLV TR E+ P+G N++VAIL YTGY+ ED
Sbjct: 970 MGIQSLNNVYTFTNKIYRMITPQFPLVVTRDYEFYGVDNFPSGTNAVVAILAYTGYDMED 1029
Query: 61 SVILNASAVERGYFRSMEY 79
++I+N ++ +RG FR+ Y
Sbjct: 1030 ALIINKASADRGIFRTHIY 1048
>UNIPROTKB|Q8II17 [details] [associations]
symbol:PF11_0358 "DNA-directed RNA polymerase"
species:36329 "Plasmodium falciparum 3D7" [GO:0005736 "DNA-directed
RNA polymerase I complex" evidence=ISS] [GO:0006360 "transcription
from RNA polymerase I promoter" evidence=ISS] InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04563 Pfam:PF04565 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0003677 EMBL:AE014186 GO:GO:0006360 GO:GO:0005736
GO:GO:0003899 KO:K03002 GO:GO:0032549 Gene3D:2.40.270.10
RefSeq:XP_001348029.1 ProteinModelPortal:Q8II17
EnsemblProtists:PF11_0358:mRNA GeneID:810905 KEGG:pfa:PF11_0358
EuPathDB:PlasmoDB:PF3D7_1134700 HOGENOM:HOG000282443 OMA:ENINIDM
ProtClustDB:CLSZ2433354 Uniprot:Q8II17
Length = 1517
Score = 277 (102.6 bits), Expect = 3.0e-36, Sum P(2) = 3.0e-36
Identities = 66/180 (36%), Positives = 92/180 (51%)
Query: 285 VQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPV 344
+ + LL GY G E++++G G + A +F+G YYQRL+HM DK R GPV
Sbjct: 1328 IDYFAKLLLNKGYDYYGTELLYSGIYGVPLQAHIFIGVIYYQRLRHMAYDKAQVRRTGPV 1387
Query: 345 QILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSDPYRIHVCNFCGLIAI 404
L QP++G+ + GG+R GEMERD ISHG + + ER SD + VC CGLI
Sbjct: 1388 CNLTHQPLKGKRKHGGIRVGEMERDGIISHGCSFVINERFLMSSDGHECFVCPKCGLILS 1447
Query: 405 ANMRNNTFE----------------CKGCKNKTQISQVRLPYAAKLLFQELMSMNIAPRL 448
M+ NT CK C +I + +PY + L EL+ +N+ RL
Sbjct: 1448 PIMQFNTTGKIMKGRSIGGKSKMAVCKSCDVSCKI--IFIPYVIRYLLNELICLNVTIRL 1505
Score = 194 (73.4 bits), Expect = 3.0e-36, Sum P(2) = 3.0e-36
Identities = 58/194 (29%), Positives = 94/194 (48%)
Query: 75 RSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFRSYKDAESKR 134
R E+ P+G N++VAIL YTGY+ ED++I+N ++ +RG FR+ +++ + + ++
Sbjct: 999 RDYEFYGVDNFPSGTNAVVAILAYTGYDMEDALIINKASADRGIFRTHIYKT-EFIDLQK 1057
Query: 135 IGDQEE-QFEKPNRQTCQGMRNAIYDKLDDDG--IIAPGLRVSGDDVVIGKTITLPENED 191
+G+ F R N ++ G + GL + G + N+
Sbjct: 1058 VGESSNFVFGNNIRYLNNNKNNNKNLAYENKGKFLNKDGLPCVQQKITEGSPLYSYINKG 1117
Query: 192 ELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASR 251
E TT + G F VD V + N + + +++RS R PQ+GDKFASR
Sbjct: 1118 N-ELTTYESFRNHGEYF--------VDFVSIGKN-NSNQVAVVKLRSTRQPQVGDKFASR 1167
Query: 252 HGQKGTCGIQYRQE 265
HGQKG + QE
Sbjct: 1168 HGQKGVVSRLFPQE 1181
Score = 149 (57.5 bits), Expect = 1.6e-31, Sum P(2) = 1.6e-31
Identities = 30/79 (37%), Positives = 45/79 (56%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
MG+ N + + P PLV TR E+ P+G N++VAIL YTGY+ ED
Sbjct: 970 MGIQSLNNVYTFTNKIYRMITPQFPLVVTRDYEFYGVDNFPSGTNAVVAILAYTGYDMED 1029
Query: 61 SVILNASAVERGYFRSMEY 79
++I+N ++ +RG FR+ Y
Sbjct: 1030 ALIINKASADRGIFRTHIY 1048
>ZFIN|ZDB-GENE-040426-1598 [details] [associations]
symbol:polr1b "polymerase (RNA) I polypeptide B"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR009674 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF06883 PROSITE:PS01166
ZFIN:ZDB-GENE-040426-1598 PANTHER:PTHR20856 GO:GO:0005634
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 KO:K03002 GO:GO:0032549
Gene3D:2.40.270.10 CTD:84172 HOVERGEN:HBG017742 Gene3D:2.40.50.150
EMBL:BC097040 IPI:IPI00859868 RefSeq:NP_956812.2 UniGene:Dr.117892
STRING:Q4V967 DNASU:325603 GeneID:325603 KEGG:dre:325603
InParanoid:Q4V967 NextBio:20809377 ArrayExpress:Q4V967
Uniprot:Q4V967
Length = 1132
Score = 298 (110.0 bits), Expect = 5.4e-36, Sum P(2) = 5.4e-36
Identities = 73/197 (37%), Positives = 100/197 (50%)
Query: 267 SSNKGEIGDATPFNDAVN---VQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPT 323
+S G DATPF + ++ LL+ GY G E +++G +G ++ A +F+G
Sbjct: 935 ASLHGLCHDATPFTFSEENSALEHFGELLKAAGYNYYGTERLYSGLSGLELEADIFIGVV 994
Query: 324 YYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRER 383
YYQRL+HMV DK R G + QPM GR GG+RFGEMERD ++HG + L +R
Sbjct: 995 YYQRLRHMVSDKFQVRTTGARDKVTNQPMGGRNVQGGIRFGEMERDALLAHGTSFLLHDR 1054
Query: 384 LFEVSDPYRIHVCNFCG-LIAI---------ANMRNNTFECKGCKNKTQISQVRLPYAAK 433
LF SD VC CG L++ + R+ C C I V +PY K
Sbjct: 1055 LFNCSDRSVAQVCMDCGSLLSTLLEKPPPNWSATRHRKTICLLCNKSDSIETVSVPYVFK 1114
Query: 434 LLFQELMSMNIAPRLMV 450
EL +MNI +L V
Sbjct: 1115 YFVAELAAMNIKIKLDV 1131
Score = 163 (62.4 bits), Expect = 5.4e-36, Sum P(2) = 5.4e-36
Identities = 59/173 (34%), Positives = 78/173 (45%)
Query: 86 PAGINSIVAILCYTGYNQEDSVILNASAVERGYFR-SVFFRSYKDAESKRIGDQEEQFE- 143
P G N+IVA++ YTGY+ ED++I+N S+ ERG+ SV+ D K GD F
Sbjct: 734 PIGTNAIVAVISYTGYDMEDAMIVNKSSWERGFAHGSVYKTEIIDLSEKVKGDDSIVFGV 793
Query: 144 KPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENEDELEGTTKRFSKR 203
KP G KLD DG+ G + D G I+L + + F K
Sbjct: 794 KPGDPKVMG-------KLDADGLPFIGSVLKYGDPFYGY-ISLNTGQSHVY-----FYKY 840
Query: 204 DGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 256
S + N + +K + R R P IGDKFASRHGQKG
Sbjct: 841 QESCVVDN-----IKVCSNETGTGRFKRICVTSRVPRNPTIGDKFASRHGQKG 888
Score = 137 (53.3 bits), Expect = 2.9e-33, Sum P(2) = 2.9e-33
Identities = 28/79 (35%), Positives = 43/79 (54%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
MG + ++ R D + L P PLV ++ P G N+IVA++ YTGY+ ED
Sbjct: 694 MGFPLHSYQYRSDNKLYRLQTPQSPLVRPAMYDHYDVDNYPIGTNAIVAVISYTGYDMED 753
Query: 61 SVILNASAVERGYFRSMEY 79
++I+N S+ ERG+ Y
Sbjct: 754 AMIVNKSSWERGFAHGSVY 772
>UNIPROTKB|F1NLV9 [details] [associations]
symbol:F1NLV9 "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0005736 "DNA-directed
RNA polymerase I complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0007566 "embryo implantation" evidence=IEA]
[GO:0009303 "rRNA transcription" evidence=IEA] [GO:0009790 "embryo
development" evidence=IEA] [GO:0017126 "nucleologenesis"
evidence=IEA] InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR009674 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF06883 PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005737
GO:GO:0003677 GO:GO:0009303 GO:GO:0005736 GO:GO:0003899 OMA:EVFAGVT
GO:GO:0032549 Gene3D:2.40.270.10 GeneTree:ENSGT00550000074993
GO:GO:0017126 EMBL:AADN02041199 IPI:IPI00576768
Ensembl:ENSGALT00000014017 Uniprot:F1NLV9
Length = 1016
Score = 301 (111.0 bits), Expect = 8.0e-36, Sum P(2) = 8.0e-36
Identities = 69/192 (35%), Positives = 99/192 (51%)
Query: 271 GEIGDATPFNDAVN---VQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQR 327
G DATPF ++ L GY G E M++G +G ++ A +F+G YYQR
Sbjct: 827 GAYYDATPFTFTEKNSALKYFGETLVSAGYNFFGTEKMYSGISGVELEADIFVGVVYYQR 886
Query: 328 LKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEV 387
L+HMV DK R GP + QP++GR +GG+RFGEMERD ++HG + L +RLF
Sbjct: 887 LRHMVSDKFQVRTTGPRDSVTNQPIKGRNVEGGIRFGEMERDALLAHGTSFLLHDRLFSC 946
Query: 388 SDPYRIHVCNFCGLI-----------AIANMRNNTFECKGCKNKTQISQVRLPYAAKLLF 436
SD +VC CG + ++A+ R + C C I + +P+ +
Sbjct: 947 SDGCEAYVCTSCGSMLSPLLQRPPPSSVASSRR--YSCMLCGRMDTIQIIPVPHVFRYFL 1004
Query: 437 QELMSMNIAPRL 448
EL +MNI RL
Sbjct: 1005 AELAAMNIKLRL 1016
Score = 156 (60.0 bits), Expect = 8.0e-36, Sum P(2) = 8.0e-36
Identities = 29/73 (39%), Positives = 45/73 (61%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
MG + N+ R D ++L+ P PLV R +Y P G NS+VA++ Y+GY+ ED
Sbjct: 581 MGFPVYNYKDRSDNKLYLLHTPQSPLVRPRMYDYYGMDSYPVGTNSVVAVISYSGYDMED 640
Query: 61 SVILNASAVERGY 73
++I+N S+ ERG+
Sbjct: 641 AMIVNKSSWERGF 653
Score = 154 (59.3 bits), Expect = 1.3e-35, Sum P(2) = 1.3e-35
Identities = 60/185 (32%), Positives = 87/185 (47%)
Query: 75 RSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGY-FRSVFFRSYKDAESK 133
R +Y P G NS+VA++ Y+GY+ ED++I+N S+ ERG+ + SV D K
Sbjct: 610 RMYDYYGMDSYPVGTNSVVAVISYSGYDMEDAMIVNKSSWERGFAYGSVIKMESIDLSLK 669
Query: 134 --RIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENED 191
R GD +P G N + +KLD DG+ P + G + G N +
Sbjct: 670 ANRGGDNLVFGIRP------GDPN-VKEKLDADGL--PFV---GSILQPGDPFYSYMNLN 717
Query: 192 ELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASR 251
E T + ++ + N + D+ +K I VR R P +GDKFASR
Sbjct: 718 TGETFTVYYQNKEVG-IVDNIKLCSNDR-----GTGKFKKACITVRVPRNPTVGDKFASR 771
Query: 252 HGQKG 256
HGQKG
Sbjct: 772 HGQKG 776
>TIGR_CMR|CHY_2318 [details] [associations]
symbol:CHY_2318 "DNA-directed RNA polymerase, beta
subunit" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0006351 GO:GO:0003899
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03043 ProtClustDB:PRK00405 Gene3D:2.30.150.10
PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013 HOGENOM:HOG000218611
OMA:FMTWEGY RefSeq:YP_361127.1 ProteinModelPortal:Q3A9Q7
STRING:Q3A9Q7 PRIDE:Q3A9Q7 GeneID:3728817 KEGG:chy:CHY_2318
PATRIC:21277705 BioCyc:CHYD246194:GJCN-2317-MONOMER Uniprot:Q3A9Q7
Length = 1132
Score = 197 (74.4 bits), Expect = 1.8e-25, Sum P(2) = 1.8e-25
Identities = 48/118 (40%), Positives = 70/118 (59%)
Query: 273 IGDATP-FNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQRLKHM 331
I ATP FN A + I L++ G G + +G TG +++V +G Y +L H+
Sbjct: 912 INVATPIFNGATE-EDIFEALRKAGLPEDGKIEVRDGRTGEPFDSRVTVGYVYMLKLAHL 970
Query: 332 VDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSD 389
VDDKIH+R+ GP ++ +QP+ G+A+ GG RFGEME ++GAA L+E L SD
Sbjct: 971 VDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTIKSD 1028
Score = 176 (67.0 bits), Expect = 1.8e-25, Sum P(2) = 1.8e-25
Identities = 61/190 (32%), Positives = 95/190 (50%)
Query: 84 ELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFRSYK-DAESKRIGDQEEQF 142
EL G N +VA + + GYN ED+++++ V+ F S+ Y+ DA ++G +E
Sbjct: 679 ELALGKNVLVAYMPWEGYNYEDAILISEKLVKEDVFTSIHIEEYECDARDTKLGPEEITR 738
Query: 143 EKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENEDELEGTTKR--- 199
+ PN G +A+ D LD+ GII G V D+++GK +T P+ E EL +
Sbjct: 739 DIPN----VG-EDALKD-LDERGIIRIGAEVRPGDILVGK-VT-PKGETELTAEERLLRA 790
Query: 200 -FSK-----RDGSTFLRNSETG-IVD-QVMLTLNVD----GYKFC-KIRVRSVRIPQIGD 246
F + RD S + + E+G +VD +V N D G ++ + R +GD
Sbjct: 791 IFGEKAREVRDTSLRVPHGESGKVVDVKVFSRENGDELSPGVNMLVRVYIAQKRKISVGD 850
Query: 247 KFASRHGQKG 256
K A RHG KG
Sbjct: 851 KMAGRHGNKG 860
Score = 72 (30.4 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 39 ELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSM 77
EL G N +VA + + GYN ED+++++ V+ F S+
Sbjct: 679 ELALGKNVLVAYMPWEGYNYEDAILISEKLVKEDVFTSI 717
>TIGR_CMR|DET_0603 [details] [associations]
symbol:DET_0603 "DNA-directed RNA polymerase, beta
subunit" species:243164 "Dehalococcoides ethenogenes 195"
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 OMA:FMTWEGY
RefSeq:YP_181345.1 ProteinModelPortal:Q3Z8V4 STRING:Q3Z8V4
PRIDE:Q3Z8V4 GeneID:3230060 KEGG:det:DET0603 PATRIC:21608277
BioCyc:DETH243164:GJNF-604-MONOMER Uniprot:Q3Z8V4
Length = 1272
Score = 191 (72.3 bits), Expect = 2.8e-25, Sum P(2) = 2.8e-25
Identities = 81/287 (28%), Positives = 128/287 (44%)
Query: 54 TGYNQEDSVILNASAVERGY-FRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNAS 112
T NQ +VI +E G EL G N +VA + + G+N ED++IL+
Sbjct: 691 TCINQH-AVINKGQKIEAGQVLADSSATENGELALGQNCVVAFMSWQGFNYEDAIILSER 749
Query: 113 AVERGYFRSVFFRSYK-DAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGL 171
V F S+ ++ +A ++G +E + PN + +R +LD+DGII G
Sbjct: 750 LVREDAFTSIHITKHELEAHDTKLGGEEITRDIPNVGE-ESLR-----ELDEDGIIRIGA 803
Query: 172 RVSGDDVVIGKTITLPENEDELEGTTKR----FSKR-----DGSTFLRNSETGIVDQVML 222
V DD+++GK IT P+ E EL K F ++ D S + + E G V V +
Sbjct: 804 EVGPDDILVGK-IT-PKGETELSAEEKLLRAIFGEKAREVKDTSLRMPHGEWGKVINVRV 861
Query: 223 TLNVDG-------YKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEVSSNKGEIGD 275
+G K+ ++ V R +GDK A RHG KG I E + + D
Sbjct: 862 FSRENGDDLPARVNKWVQVWVAQKRKVSVGDKLAGRHGNKGVISIIAPVE---DMPYLPD 918
Query: 276 ATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHT-GRKINAQVFLG 321
TP + +N + + + G Q+ + + GH G ++ VF G
Sbjct: 919 GTPVDVVLNPIGVPSRMN-LG-QILETHLGWAGHLLGFRVATPVFDG 963
Score = 182 (69.1 bits), Expect = 2.8e-25, Sum P(2) = 2.8e-25
Identities = 37/89 (41%), Positives = 55/89 (61%)
Query: 301 GNEVMFNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGG 360
G V+ +G TG + V +G Y +L H+V+DK+H+RA GP ++ +QP+ G+A+ GG
Sbjct: 1067 GKSVLRDGRTGETFDQPVTVGNMYILKLIHLVEDKVHARATGPYSLISQQPLGGKAQFGG 1126
Query: 361 LRFGEMERDCQISHGAAQFLRERLFEVSD 389
RFGEME ++G A L+E L SD
Sbjct: 1127 QRFGEMEVWAMYAYGTAHNLQEMLTIKSD 1155
Score = 77 (32.2 bits), Expect = 2.4e-13, Sum P(2) = 2.4e-13
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 39 ELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSMEYLRFRELPA 87
EL G N +VA + + G+N ED++IL+ V F S+ + EL A
Sbjct: 721 ELALGQNCVVAFMSWQGFNYEDAIILSERLVREDAFTSIHITK-HELEA 768
>TIGR_CMR|BA_0102 [details] [associations]
symbol:BA_0102 "DNA-directed RNA polymerase, beta subunit"
species:198094 "Bacillus anthracis str. Ames" [GO:0000345
"cytosolic DNA-directed RNA polymerase complex" evidence=ISS]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03043 ProtClustDB:PRK00405 Gene3D:2.30.150.10
PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013 RefSeq:NP_842670.1
RefSeq:YP_026388.1 RefSeq:YP_052605.1 ProteinModelPortal:Q81VT8
IntAct:Q81VT8 PRIDE:Q81VT8 DNASU:1086075
EnsemblBacteria:EBBACT00000010978 EnsemblBacteria:EBBACT00000018107
EnsemblBacteria:EBBACT00000023445 GeneID:1086075 GeneID:2820986
GeneID:2850888 KEGG:ban:BA_0102 KEGG:bar:GBAA_0102 KEGG:bat:BAS0102
HOGENOM:HOG000218611 OMA:FMTWEGY BioCyc:BANT260799:GJAJ-113-MONOMER
BioCyc:BANT261594:GJ7F-115-MONOMER Uniprot:Q81VT8
Length = 1177
Score = 205 (77.2 bits), Expect = 7.6e-25, Sum P(2) = 7.6e-25
Identities = 43/114 (37%), Positives = 67/114 (58%)
Query: 276 ATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQRLKHMVDDK 335
ATP D + + ++E G ++++G TG + +V +G Y +L HMVDDK
Sbjct: 987 ATPVFDGAREEDVWGTIEEAGMANDAKTILYDGRTGEPFDNRVSVGVMYMIKLAHMVDDK 1046
Query: 336 IHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSD 389
+H+R+ GP ++ +QP+ G+A+ GG RFGEME ++GAA L+E L SD
Sbjct: 1047 LHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTVKSD 1100
Score = 162 (62.1 bits), Expect = 7.6e-25, Sum P(2) = 7.6e-25
Identities = 67/246 (27%), Positives = 105/246 (42%)
Query: 54 TGYNQEDSVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASA 113
T YNQ V + V+ + EL G N +V + + GYN ED++I++
Sbjct: 721 TCYNQRPIVSVGNEVVKGEILADGPSMELGELALGRNVLVGFMTWDGYNYEDAIIMSERL 780
Query: 114 VERGYFRSVFFRSYK-DAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLR 172
V+ + S+ Y+ +A ++G +E + PN +RN LD+ GII G
Sbjct: 781 VKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGE-DALRN-----LDERGIIRVGAE 834
Query: 173 VSGDDVVIGKT----IT-LPENEDELEGT--TKRFSKRDGSTFLRNSETGIVDQVMLTLN 225
V D+++GK +T L E L K RD S + + GI+ V +
Sbjct: 835 VKDGDLLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIILDVKVFNR 894
Query: 226 VDGYKFCK-----IRVRSVRIPQI--GDKFASRHGQKGTCGIQYRQEVSSNKGEIGDATP 278
DG + +R V+ +I GDK A RHG KG +E + + D TP
Sbjct: 895 EDGDELPPGVNQLVRAYIVQKRKISEGDKMAGRHGNKGVISRILPEE---DMPYLPDGTP 951
Query: 279 FNDAVN 284
+ +N
Sbjct: 952 IDIMLN 957
Score = 67 (28.6 bits), Expect = 6.0e-15, Sum P(2) = 6.0e-15
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 39 ELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSM 77
EL G N +V + + GYN ED++I++ V+ + S+
Sbjct: 751 ELALGRNVLVGFMTWDGYNYEDAIIMSERLVKDDVYTSI 789
>TIGR_CMR|SPO_3508 [details] [associations]
symbol:SPO_3508 "DNA-directed RNA polymerase, beta
subunit" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000345
"cytosolic DNA-directed RNA polymerase complex" evidence=ISS]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 OMA:QRDLTYA ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
RefSeq:YP_168703.1 ProteinModelPortal:Q5LMQ5 PRIDE:Q5LMQ5
GeneID:3196296 KEGG:sil:SPO3508 PATRIC:23380485 Uniprot:Q5LMQ5
Length = 1378
Score = 219 (82.2 bits), Expect = 4.4e-24, Sum P(3) = 4.4e-24
Identities = 46/114 (40%), Positives = 66/114 (57%)
Query: 276 ATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQRLKHMVDDK 335
ATP D ++ L G+ G V+F+G TG + V +G Y +L H+VDDK
Sbjct: 1215 ATPVFDGAKEADVNDALTRAGFDTSGQSVLFDGRTGEQFARPVTVGIKYLLKLHHLVDDK 1274
Query: 336 IHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSD 389
IH+R+ GP ++ +QP+ G+A+ GG RFGEME ++GAA L+E L SD
Sbjct: 1275 IHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1328
Score = 124 (48.7 bits), Expect = 4.4e-24, Sum P(3) = 4.4e-24
Identities = 34/111 (30%), Positives = 57/111 (51%)
Query: 84 ELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFRSYK-DAESKRIGDQEEQF 142
EL G N +VA + + GYN EDS++++ F S+ ++ A ++G +E
Sbjct: 812 ELALGKNVVVAFMPWNGYNYEDSILISERIARDDVFTSIHIEEFEVAARDTKLGPEEITR 871
Query: 143 EKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENEDEL 193
+ PN + +RN LD+ GI+ G V D+++GK IT P+ E +
Sbjct: 872 DIPNVGE-EALRN-----LDEAGIVYIGAEVQPGDILVGK-IT-PKGESPM 914
Score = 72 (30.4 bits), Expect = 9.9e-19, Sum P(3) = 9.9e-19
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 39 ELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSMEYLRF 82
EL G N +VA + + GYN EDS++++ F S+ F
Sbjct: 812 ELALGKNVVVAFMPWNGYNYEDSILISERIARDDVFTSIHIEEF 855
Score = 61 (26.5 bits), Expect = 4.4e-24, Sum P(3) = 4.4e-24
Identities = 18/55 (32%), Positives = 24/55 (43%)
Query: 230 KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEVSSNKGEIGDATPFNDAVN 284
K K+ + R Q GDK A RHG KG E + + D TP + +N
Sbjct: 1080 KMVKVFIAVKRKLQPGDKMAGRHGNKGVISKVVPME---DMPFLADGTPVDFCLN 1131
Score = 37 (18.1 bits), Expect = 3.2e-13, Sum P(2) = 3.2e-13
Identities = 16/74 (21%), Positives = 32/74 (43%)
Query: 215 GIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEVSSNKGEIG 274
G+++ + V+ Y F + R V+ Q+ D+ H T + R V+ +
Sbjct: 590 GLINSLATFARVNKYGFIETPYRVVKGGQVTDEV---HYMSAT--EEMRHTVAQANATLD 644
Query: 275 DATPF-NDAVNVQK 287
+ F N+ VN ++
Sbjct: 645 ENGKFVNELVNTRQ 658
>UNIPROTKB|P0A680 [details] [associations]
symbol:rpoB "DNA-directed RNA polymerase subunit beta"
species:1773 "Mycobacterium tuberculosis" [GO:0005515 "protein
binding" evidence=IPI] [GO:0005618 "cell wall" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0040007 "growth" evidence=IMP] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0005829 GO:GO:0005886 GO:GO:0040007
GO:GO:0005618 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0003677 GO:GO:0046677 GO:GO:0006351
EMBL:BX842574 GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
OMA:FMTWEGY EMBL:L27989 EMBL:U12205 EMBL:L05910 EMBL:AF143771
EMBL:AF146567 EMBL:AF147030 EMBL:AF147031 EMBL:AF147033
EMBL:AF147034 EMBL:S71246 PIR:F70535 RefSeq:NP_215181.1
RefSeq:NP_335107.1 RefSeq:YP_006514009.1 ProteinModelPortal:P0A680
SMR:P0A680 IntAct:P0A680 PRIDE:P0A680
EnsemblBacteria:EBMYCT00000001730 EnsemblBacteria:EBMYCT00000071499
GeneID:13318554 GeneID:888164 GeneID:925979 KEGG:mtc:MT0695
KEGG:mtu:Rv0667 KEGG:mtv:RVBD_0667 PATRIC:18123249
TubercuList:Rv0667 BindingDB:P0A680 ChEMBL:CHEMBL2006
Uniprot:P0A680
Length = 1178
Score = 186 (70.5 bits), Expect = 2.4e-23, Sum P(2) = 2.4e-23
Identities = 38/89 (42%), Positives = 56/89 (62%)
Query: 301 GNEVMFNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGG 360
G ++F+G +G V +G Y +L H+VDDKIH+R+ GP ++ +QP+ G+A+ GG
Sbjct: 1006 GKAMLFDGRSGEPFPYPVTVGYMYIMKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGG 1065
Query: 361 LRFGEMERDCQISHGAAQFLRERLFEVSD 389
RFGEME ++GAA L+E L SD
Sbjct: 1066 QRFGEMECWAMQAYGAAYTLQELLTIKSD 1094
Score = 168 (64.2 bits), Expect = 2.4e-23, Sum P(2) = 2.4e-23
Identities = 69/250 (27%), Positives = 115/250 (46%)
Query: 84 ELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFRSYK-DAESKRIGDQEEQF 142
E+ G N +VAI+ + G+N ED++IL+ VE S+ ++ DA ++G +E
Sbjct: 712 EMALGKNLLVAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITR 771
Query: 143 EKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENEDEL--EGTTKR- 199
+ PN + + + LD+ GI+ G V D+++GK +T P+ E EL E R
Sbjct: 772 DIPN------ISDEVLADLDERGIVRIGAEVRDGDILVGK-VT-PKGETELTPEERLLRA 823
Query: 200 -FSK-----RDGSTFLRNSETGIVDQVMLTLNVD------GY-KFCKIRVRSVRIPQIGD 246
F + RD S + + E+G V + + D G + ++ V R GD
Sbjct: 824 IFGEKAREVRDTSLKVPHGESGKVIGIRVFSREDEDELPAGVNELVRVYVAQKRKISDGD 883
Query: 247 KFASRHGQKGTCGIQYRQEVSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMF 306
K A RHG KG G E + + D TP + +N + + G Q+ + +
Sbjct: 884 KLAGRHGNKGVIGKILPVE---DMPFLADGTPVDIILNTHGVPRRMN-IG-QILETHLGW 938
Query: 307 NGHTGRKINA 316
H+G K++A
Sbjct: 939 CAHSGWKVDA 948
Score = 73 (30.8 bits), Expect = 1.9e-13, Sum P(2) = 1.9e-13
Identities = 41/156 (26%), Positives = 66/156 (42%)
Query: 39 ELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCY 98
E+ G N +VAI+ + G+N ED++IL+ VE S+ ++ E+ A + A
Sbjct: 712 EMALGKNLLVAIMPWEGHNYEDAIILSNRLVEEDVLTSI-HIEEHEIDARDTKLGAEEIT 770
Query: 99 TGY-NQEDSVILNASAVERGYFRSVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAI 157
N D V+ A ERG R D ++ + E P + + +
Sbjct: 771 RDIPNISDEVL--ADLDERGIVRIGAEVRDGDILVGKVTPKGETELTPEERLLRAIFGEK 828
Query: 158 YDKLDDDGIIAPGLRVSGDDVVIGKTITLPENEDEL 193
++ D + P SG VIG + E+EDEL
Sbjct: 829 AREVRDTSLKVPHGE-SGK--VIGIRVFSREDEDEL 861
Score = 43 (20.2 bits), Expect = 2.4e-10, Sum P(2) = 2.4e-10
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 39 ELPAGINSIVAI 50
ELPAG+N +V +
Sbjct: 860 ELPAGVNELVRV 871
>TIGR_CMR|CBU_0231 [details] [associations]
symbol:CBU_0231 "DNA-directed RNA polymerase, beta
subunit" species:227377 "Coxiella burnetii RSA 493" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
EMBL:CP001019 EMBL:U86688 GenomeReviews:CP001019_GR eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
RefSeq:YP_002304193.1 ProteinModelPortal:B6J270 STRING:B6J270
PRIDE:B6J270 GeneID:7014190 KEGG:cbg:CbuG_1774 PATRIC:17914647
OMA:HANEEIT Uniprot:B6J270
Length = 1375
Score = 202 (76.2 bits), Expect = 7.5e-23, Sum P(3) = 7.5e-23
Identities = 42/114 (36%), Positives = 67/114 (58%)
Query: 276 ATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQRLKHMVDDK 335
++P D ++I LL+ G +++G TG+K + V +G Y +L H+VDDK
Sbjct: 1216 SSPVFDGATEEEIKQLLKMADLPTSGQAALYDGRTGKKFDRSVTVGYMYMLKLNHLVDDK 1275
Query: 336 IHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSD 389
+H+R+ G ++ +QP+ G+A+ GG RFGEME ++GAA L+E L SD
Sbjct: 1276 MHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1329
Score = 134 (52.2 bits), Expect = 7.5e-23, Sum P(3) = 7.5e-23
Identities = 34/111 (30%), Positives = 60/111 (54%)
Query: 84 ELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFRSYKD-AESKRIGDQEEQF 142
EL G N +VA + + GYN EDS++++ VE F ++ + + A ++G +E
Sbjct: 815 ELALGQNLLVAFMPWNGYNFEDSILISERLVEEDRFTTIHIQEFTCVARDTKLGPEEITS 874
Query: 143 EKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENEDEL 193
+ PN + + KLD+ GI+ G V+ D+++GK +T P+ E +L
Sbjct: 875 DIPN------VGESALAKLDESGIVHIGAEVNAGDILVGK-VT-PKGETQL 917
Score = 77 (32.2 bits), Expect = 5.4e-17, Sum P(3) = 5.4e-17
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 39 ELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSMEYLRF 82
EL G N +VA + + GYN EDS++++ VE F ++ F
Sbjct: 815 ELALGQNLLVAFMPWNGYNFEDSILISERLVEEDRFTTIHIQEF 858
Score = 58 (25.5 bits), Expect = 7.5e-23, Sum P(3) = 7.5e-23
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 230 KFCKIRVRSVRIPQIGDKFASRHGQKG 256
K K+ + R Q GDK A RHG KG
Sbjct: 1083 KIVKVYLAVKRRIQPGDKMAGRHGNKG 1109
>TIGR_CMR|CJE_0528 [details] [associations]
symbol:CJE_0528 "DNA-directed RNA polymerase, beta
subunit" species:195099 "Campylobacter jejuni RM1221" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
OMA:FMTWEGY RefSeq:YP_178546.1 ProteinModelPortal:Q5HVY9
STRING:Q5HVY9 GeneID:3231289 KEGG:cjr:CJE0528 PATRIC:20042778
BioCyc:CJEJ195099:GJC0-543-MONOMER Uniprot:Q5HVY9
Length = 1378
Score = 220 (82.5 bits), Expect = 1.5e-22, Sum P(3) = 1.5e-22
Identities = 47/121 (38%), Positives = 74/121 (61%)
Query: 269 NKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQRL 328
+KG + +TP + VN+++ S L + + G +++G TG KI +V +G Y +L
Sbjct: 1208 SKG-VKFSTPVFEGVNIEEFSKLFKMAKIDMDGKTELYDGRTGEKIAERVHVGCMYMLKL 1266
Query: 329 KHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVS 388
H+VD+K+H+R+ GP ++ +QP+ G+A GG RFGEME ++GAA LRE L S
Sbjct: 1267 HHLVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGAAHTLREMLTIKS 1326
Query: 389 D 389
D
Sbjct: 1327 D 1327
Score = 104 (41.7 bits), Expect = 1.5e-22, Sum P(3) = 1.5e-22
Identities = 27/101 (26%), Positives = 50/101 (49%)
Query: 84 ELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFRSYKDAESKRIGDQEEQFE 143
EL G N+++A + + GYN ED+++++ + F SV K+ E++ + D E+
Sbjct: 804 ELAIGKNALIAFMPWNGYNYEDAIVVSERIIREDTFTSVHIYE-KEIEARELKDGIEEIT 862
Query: 144 K--PNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGK 182
K PN ++ LD+ GI G + +++GK
Sbjct: 863 KDIPN------VKEEDVAHLDESGIAKIGTHIKPGMILVGK 897
Score = 87 (35.7 bits), Expect = 8.3e-21, Sum P(3) = 8.3e-21
Identities = 23/82 (28%), Positives = 41/82 (50%)
Query: 39 ELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSME-Y---LRFRELPAGINSIVA 94
EL G N+++A + + GYN ED+++++ + F S+ Y + REL GI I
Sbjct: 804 ELAIGKNALIAFMPWNGYNYEDAIVVSERIIREDTFTSVHIYEKEIEARELKDGIEEITK 863
Query: 95 ILCYTGYNQEDSVILNASAVER 116
+ +ED L+ S + +
Sbjct: 864 DI--PNVKEEDVAHLDESGIAK 883
Score = 65 (27.9 bits), Expect = 1.5e-22, Sum P(3) = 1.5e-22
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 230 KFCKIRVRSVRIPQIGDKFASRHGQKG 256
K K+ + + R ++GDK A RHG KG
Sbjct: 1077 KLVKVYIATKRKLKVGDKMAGRHGNKG 1103
>UNIPROTKB|P60281 [details] [associations]
symbol:rpoB "DNA-directed RNA polymerase subunit beta"
species:246196 "Mycobacterium smegmatis str. MC2 155" [GO:0005515
"protein binding" evidence=IPI] HAMAP:MF_01321 InterPro:IPR007120
InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642
InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR010243
InterPro:IPR014724 InterPro:IPR015712 InterPro:IPR019462
Pfam:PF00562 Pfam:PF04560 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565
Pfam:PF10385 PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0003677
EMBL:CP000480 EMBL:CP001663 GenomeReviews:CP000480_GR GO:GO:0006351
GO:GO:0003899 eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
HOGENOM:HOG000218611 OMA:FMTWEGY EMBL:AJ605718
RefSeq:YP_006566096.1 RefSeq:YP_885753.1 ProteinModelPortal:P60281
IntAct:P60281 STRING:P60281 EnsemblBacteria:EBMYCT00000043175
GeneID:13429143 GeneID:4535217 KEGG:msm:MSMEG_1367 PATRIC:18075189
BioCyc:MSME246196:GJ4Y-1367-MONOMER Uniprot:P60281
Length = 1169
Score = 184 (69.8 bits), Expect = 3.4e-22, Sum P(2) = 3.4e-22
Identities = 38/89 (42%), Positives = 55/89 (61%)
Query: 301 GNEVMFNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGG 360
G +F+G +G V +G Y +L H+VDDKIH+R+ GP ++ +QP+ G+A+ GG
Sbjct: 997 GKSTLFDGRSGEPFPYPVTVGYMYILKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGG 1056
Query: 361 LRFGEMERDCQISHGAAQFLRERLFEVSD 389
RFGEME ++GAA L+E L SD
Sbjct: 1057 QRFGEMECWAMQAYGAAYTLQELLTIKSD 1085
Score = 159 (61.0 bits), Expect = 3.4e-22, Sum P(2) = 3.4e-22
Identities = 58/193 (30%), Positives = 92/193 (47%)
Query: 84 ELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFRSYK-DAESKRIGDQEEQF 142
E+ G N +VAI+ + G+N ED++IL+ VE S+ ++ DA ++G +E
Sbjct: 703 EMALGKNLLVAIMPWEGHNYEDAIILSNRLVEEDVLTSIHIEEHEIDARDTKLGAEEITR 762
Query: 143 EKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENEDEL--EGTTKR- 199
+ PN + + + LD+ GI+ G V D+++GK +T P+ E EL E R
Sbjct: 763 DIPN------VSDEVLADLDERGIVRIGAEVRDGDILVGK-VT-PKGETELTPEERLLRA 814
Query: 200 -FSK-----RDGSTFLRNSETGIVDQVMLTLNVD------GY-KFCKIRVRSVRIPQIGD 246
F + RD S + + E+G V + + D G + ++ V R GD
Sbjct: 815 IFGEKAREVRDTSLKVPHGESGKVIGIRVFSREDDDELPAGVNELVRVYVAQKRKISDGD 874
Query: 247 KFASRHGQKGTCG 259
K A RHG KG G
Sbjct: 875 KLAGRHGNKGVIG 887
Score = 73 (30.8 bits), Expect = 3.1e-13, Sum P(2) = 3.1e-13
Identities = 26/83 (31%), Positives = 40/83 (48%)
Query: 39 ELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCY 98
E+ G N +VAI+ + G+N ED++IL+ VE S+ ++ E+ A + A
Sbjct: 703 EMALGKNLLVAIMPWEGHNYEDAIILSNRLVEEDVLTSI-HIEEHEIDARDTKLGAEEIT 761
Query: 99 TGY-NQEDSVILNASAVERGYFR 120
N D V+ A ERG R
Sbjct: 762 RDIPNVSDEVL--ADLDERGIVR 782
Score = 43 (20.2 bits), Expect = 3.9e-10, Sum P(2) = 3.9e-10
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 39 ELPAGINSIVAI 50
ELPAG+N +V +
Sbjct: 851 ELPAGVNELVRV 862
>TIGR_CMR|SO_0224 [details] [associations]
symbol:SO_0224 "DNA-directed RNA polymerase, beta subunit"
species:211586 "Shewanella oneidensis MR-1" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
OMA:FMTWEGY RefSeq:NP_715864.1 ProteinModelPortal:Q8EK74
PRIDE:Q8EK74 GeneID:1168107 KEGG:son:SO_0224 PATRIC:23520141
Uniprot:Q8EK74
Length = 1345
Score = 213 (80.0 bits), Expect = 3.7e-22, Sum P(2) = 3.7e-22
Identities = 50/150 (33%), Positives = 81/150 (54%)
Query: 240 RIPQIGDKFASRHGQKGTCGIQYRQEVSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQL 299
++ ++GD+ R + + ++ KG I ATP D ++I +L+ G
Sbjct: 1150 QVYELGDEVQQRVDIDSFTDDELLRLANNLKGGIPVATPAFDGAKEKEIKQMLELAGLPT 1209
Query: 300 RGNEVMFNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDG 359
G +F+G TG + V +G Y +L H+VDDK+H+R+ G ++ +QP+ G+A+ G
Sbjct: 1210 SGQLKLFDGRTGNEFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFG 1269
Query: 360 GLRFGEMERDCQISHGAAQFLRERLFEVSD 389
G RFGEME ++GAA L+E L SD
Sbjct: 1270 GQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1299
Score = 129 (50.5 bits), Expect = 3.7e-22, Sum P(2) = 3.7e-22
Identities = 49/182 (26%), Positives = 86/182 (47%)
Query: 84 ELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFRSYKD-AESKRIGDQEEQF 142
+L G N +A + + GYN EDS++++ + F ++ + A ++G +E
Sbjct: 794 DLALGQNMRIAFMPWNGYNFEDSILISERVAQEDRFTTIHIQELSCIARDTKLGSEEITA 853
Query: 143 EKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENEDELEGTTKR--- 199
+ PN + + KLD+ GI+ G V G D+++GK +T P+ E +L K
Sbjct: 854 DIPN------VGESALSKLDESGIVYIGAEVKGGDILVGK-VT-PKGETQLTPEEKLLRA 905
Query: 200 -FSKR-----DGSTFLRNSETG-IVDQVMLTLNVDGYKFCK--IRVRSVRIPQ----IGD 246
F ++ D S + NS G I+D + T DG + K I + + I Q +G+
Sbjct: 906 IFGEKASDVKDSSLRVPNSVKGTIIDVQVFTR--DGVEKDKRAIEIEEMHIAQARKDLGE 963
Query: 247 KF 248
+F
Sbjct: 964 EF 965
Score = 60 (26.2 bits), Expect = 5.7e-15, Sum P(2) = 5.7e-15
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 39 ELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSM 77
+L G N +A + + GYN EDS++++ + F ++
Sbjct: 794 DLALGQNMRIAFMPWNGYNFEDSILISERVAQEDRFTTI 832
Score = 45 (20.9 bits), Expect = 2.1e-13, Sum P(2) = 2.1e-13
Identities = 13/57 (22%), Positives = 24/57 (42%)
Query: 163 DDGIIAPGLRVSGDDVVIGKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQ 219
D G++ R D V I + NEDEL + + + R+++ ++Q
Sbjct: 712 DSGVVVAAKRGGVIDYVDASRIVVKVNEDELRPGEAGIDIYNLTKYTRSNQNTCINQ 768
>TIGR_CMR|GSU_2863 [details] [associations]
symbol:GSU_2863 "DNA-directed RNA polymerase, beta
subunit" species:243231 "Geobacter sulfurreducens PCA" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0003899 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 HOGENOM:HOG000218612
KO:K03043 ProtClustDB:PRK00405 Gene3D:2.30.150.10
PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013 OMA:FMTWEGY
RefSeq:NP_953905.1 ProteinModelPortal:Q748Y6 PRIDE:Q748Y6
GeneID:2686783 KEGG:gsu:GSU2863 PATRIC:22028577
BioCyc:GSUL243231:GH27-2844-MONOMER Uniprot:Q748Y6
Length = 1370
Score = 193 (73.0 bits), Expect = 4.9e-22, Sum P(3) = 4.9e-22
Identities = 40/114 (35%), Positives = 68/114 (59%)
Query: 276 ATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQRLKHMVDDK 335
A+P + + ++I ++L + G+ +++G +G +V +G Y +L H+VDDK
Sbjct: 1208 ASPVFEGASEEQIRSMLDKAGFDETAQVSLYDGKSGEPFKHKVTVGVMYVLKLHHLVDDK 1267
Query: 336 IHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSD 389
IH+R+ GP ++ +QP+ G+A+ GG R GEME ++GAA L+E L SD
Sbjct: 1268 IHARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWAMEAYGAAYALQEFLTVKSD 1321
Score = 128 (50.1 bits), Expect = 4.9e-22, Sum P(3) = 4.9e-22
Identities = 38/116 (32%), Positives = 61/116 (52%)
Query: 84 ELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFRSYKD-AESKRIGDQEEQF 142
EL G N +VA + + GYN EDS++++ V+ + S+ ++ A ++G +E
Sbjct: 801 ELALGQNVVVAFMPWGGYNFEDSILVSEKLVKDDRYTSIHIEEFECVARDTKLGKEEITS 860
Query: 143 EKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENEDELEGTTK 198
+ PN G A+ D LD+ GII G V D+++GK IT P+ E +L K
Sbjct: 861 DIPNL----G-EEALKD-LDESGIIRIGAEVKPGDILVGK-IT-PKGETQLSPEEK 908
Score = 69 (29.3 bits), Expect = 5.5e-16, Sum P(3) = 5.5e-16
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 39 ELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSMEYLRF 82
EL G N +VA + + GYN EDS++++ V+ + S+ F
Sbjct: 801 ELALGQNVVVAFMPWGGYNFEDSILVSEKLVKDDRYTSIHIEEF 844
Score = 66 (28.3 bits), Expect = 4.9e-22, Sum P(3) = 4.9e-22
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 230 KFCKIRVRSVRIPQIGDKFASRHGQKG 256
K K+ + R Q+GDK A RHG KG
Sbjct: 1076 KMVKVYIAIKRKLQVGDKMAGRHGNKG 1102
Score = 42 (19.8 bits), Expect = 0.00084, Sum P(2) = 0.00084
Identities = 11/45 (24%), Positives = 22/45 (48%)
Query: 300 RGNEVMFNGHTG--RKINAQVFLGPTYYQRLKHMVDDKIHSRARG 342
R +E+ +G G K++A + ++++ DDK+ RG
Sbjct: 1023 RWDEISVSGEAGVDEKVSAILQTLQQQIDIIRYVFDDKVQKLKRG 1067
>UNIPROTKB|Q9KV30 [details] [associations]
symbol:rpoB "DNA-directed RNA polymerase subunit beta"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006351 GO:GO:0003899
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03043 ProtClustDB:PRK00405 Gene3D:2.30.150.10
PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013 PIR:F82336
RefSeq:NP_229982.1 PDB:3E7H PDBsum:3E7H ProteinModelPortal:Q9KV30
PRIDE:Q9KV30 DNASU:2615094 GeneID:2615094 KEGG:vch:VC0328
PATRIC:20079713 OMA:IGYIYML EvolutionaryTrace:Q9KV30 Uniprot:Q9KV30
Length = 1341
Score = 192 (72.6 bits), Expect = 1.2e-21, Sum P(3) = 1.2e-21
Identities = 43/114 (37%), Positives = 62/114 (54%)
Query: 276 ATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQRLKHMVDDK 335
ATP D I +L+ G +F+G TG V +G Y +L H+VDDK
Sbjct: 1182 ATPVFDGAPESSIKAMLELADLPASGQLTLFDGRTGDAFERPVTVGYMYMLKLNHLVDDK 1241
Query: 336 IHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSD 389
+H+R+ G ++ +QP+ G+A+ GG RFGEME ++GAA L+E L SD
Sbjct: 1242 MHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1295
Score = 133 (51.9 bits), Expect = 1.2e-21, Sum P(3) = 1.2e-21
Identities = 63/226 (27%), Positives = 100/226 (44%)
Query: 42 AGINSIVAILCYTGYNQEDSV-----ILNASAVERG-YFRSMEYLRFRELPAGINSIVAI 95
AGI+ I + YT NQ + ++ V RG EL G N +A
Sbjct: 746 AGID-IYNLTKYTRSNQNTCINQRPCVMPGEPVARGDVLADGPSTDLGELALGQNMRIAF 804
Query: 96 LCYTGYNQEDSVILNASAVERGYFRSVFFRSYKD-AESKRIGDQEEQFEKPNRQTCQGMR 154
+ + GYN EDS++++ V+ F ++ + A ++G +E + PN +
Sbjct: 805 MPWNGYNFEDSILVSERVVQDDRFTTIHIQELSCVARDTKLGAEEITADIPN------VG 858
Query: 155 NAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENEDELEGTTKR----FSKRDGS---T 207
A KLD+ GI+ G V G D+++GK +T P+ E +L K F ++ T
Sbjct: 859 EAALSKLDESGIVYIGAEVKGGDILVGK-VT-PKGETQLTPEEKLLRAIFGEKASDVKDT 916
Query: 208 FLR--NSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASR 251
LR NS G V V + DG + K R++ I Q+ K A +
Sbjct: 917 SLRVPNSVAGTVIDVQVFTR-DGVEKDK---RALEIEQMQLKEAKK 958
Score = 64 (27.6 bits), Expect = 1.4e-14, Sum P(3) = 1.4e-14
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 39 ELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSM 77
EL G N +A + + GYN EDS++++ V+ F ++
Sbjct: 793 ELALGQNMRIAFMPWNGYNFEDSILVSERVVQDDRFTTI 831
Score = 58 (25.5 bits), Expect = 1.2e-21, Sum P(3) = 1.2e-21
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 230 KFCKIRVRSVRIPQIGDKFASRHGQKG 256
K K+ + R Q GDK A RHG KG
Sbjct: 1048 KIVKVYLAVKRRIQPGDKMAGRHGNKG 1074
>TIGR_CMR|VC_0328 [details] [associations]
symbol:VC_0328 "DNA-directed RNA polymerase, beta subunit"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006351 GO:GO:0003899
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03043 ProtClustDB:PRK00405 Gene3D:2.30.150.10
PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013 PIR:F82336
RefSeq:NP_229982.1 PDB:3E7H PDBsum:3E7H ProteinModelPortal:Q9KV30
PRIDE:Q9KV30 DNASU:2615094 GeneID:2615094 KEGG:vch:VC0328
PATRIC:20079713 OMA:IGYIYML EvolutionaryTrace:Q9KV30 Uniprot:Q9KV30
Length = 1341
Score = 192 (72.6 bits), Expect = 1.2e-21, Sum P(3) = 1.2e-21
Identities = 43/114 (37%), Positives = 62/114 (54%)
Query: 276 ATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQRLKHMVDDK 335
ATP D I +L+ G +F+G TG V +G Y +L H+VDDK
Sbjct: 1182 ATPVFDGAPESSIKAMLELADLPASGQLTLFDGRTGDAFERPVTVGYMYMLKLNHLVDDK 1241
Query: 336 IHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSD 389
+H+R+ G ++ +QP+ G+A+ GG RFGEME ++GAA L+E L SD
Sbjct: 1242 MHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1295
Score = 133 (51.9 bits), Expect = 1.2e-21, Sum P(3) = 1.2e-21
Identities = 63/226 (27%), Positives = 100/226 (44%)
Query: 42 AGINSIVAILCYTGYNQEDSV-----ILNASAVERG-YFRSMEYLRFRELPAGINSIVAI 95
AGI+ I + YT NQ + ++ V RG EL G N +A
Sbjct: 746 AGID-IYNLTKYTRSNQNTCINQRPCVMPGEPVARGDVLADGPSTDLGELALGQNMRIAF 804
Query: 96 LCYTGYNQEDSVILNASAVERGYFRSVFFRSYKD-AESKRIGDQEEQFEKPNRQTCQGMR 154
+ + GYN EDS++++ V+ F ++ + A ++G +E + PN +
Sbjct: 805 MPWNGYNFEDSILVSERVVQDDRFTTIHIQELSCVARDTKLGAEEITADIPN------VG 858
Query: 155 NAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENEDELEGTTKR----FSKRDGS---T 207
A KLD+ GI+ G V G D+++GK +T P+ E +L K F ++ T
Sbjct: 859 EAALSKLDESGIVYIGAEVKGGDILVGK-VT-PKGETQLTPEEKLLRAIFGEKASDVKDT 916
Query: 208 FLR--NSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASR 251
LR NS G V V + DG + K R++ I Q+ K A +
Sbjct: 917 SLRVPNSVAGTVIDVQVFTR-DGVEKDK---RALEIEQMQLKEAKK 958
Score = 64 (27.6 bits), Expect = 1.4e-14, Sum P(3) = 1.4e-14
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 39 ELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSM 77
EL G N +A + + GYN EDS++++ V+ F ++
Sbjct: 793 ELALGQNMRIAFMPWNGYNFEDSILVSERVVQDDRFTTI 831
Score = 58 (25.5 bits), Expect = 1.2e-21, Sum P(3) = 1.2e-21
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 230 KFCKIRVRSVRIPQIGDKFASRHGQKG 256
K K+ + R Q GDK A RHG KG
Sbjct: 1048 KIVKVYLAVKRRIQPGDKMAGRHGNKG 1074
>UNIPROTKB|P0A8V2 [details] [associations]
symbol:rpoB "RNA polymerase, beta subunit" species:83333
"Escherichia coli K-12" [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016020
"membrane" evidence=IDA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0005737 GO:GO:0016020 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003677 GO:GO:0006351 EMBL:U00006 DrugBank:DB01045 PDB:3IYD
PDBsum:3IYD GO:GO:0003899 EMBL:V00339 PDB:3T72 PDBsum:3T72
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 PDB:3LU0 PDBsum:3LU0 KO:K03043
ProtClustDB:PRK00405 Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3
TIGRFAMs:TIGR02013 OMA:FMTWEGY EMBL:V00340 EMBL:U76222 EMBL:V00341
EMBL:M38292 EMBL:M38293 EMBL:M38287 EMBL:M38304 EMBL:U77436
EMBL:M38303 PIR:F65205 RefSeq:NP_418414.1 RefSeq:YP_491474.1
PDB:3LTI PDB:3TBI PDBsum:3LTI PDBsum:3TBI ProteinModelPortal:P0A8V2
SMR:P0A8V2 DIP:DIP-35777N IntAct:P0A8V2 MINT:MINT-1222430
SWISS-2DPAGE:P0A8V2 PaxDb:P0A8V2 PRIDE:P0A8V2
EnsemblBacteria:EBESCT00000000939 EnsemblBacteria:EBESCT00000000940
EnsemblBacteria:EBESCT00000000941 EnsemblBacteria:EBESCT00000017696
GeneID:12934478 GeneID:948488 KEGG:ecj:Y75_p3210 KEGG:eco:b3987
PATRIC:32123495 EchoBASE:EB0887 EcoGene:EG10894
BioCyc:EcoCyc:RPOB-MONOMER BioCyc:ECOL316407:JW3950-MONOMER
BioCyc:MetaCyc:RPOB-MONOMER BindingDB:P0A8V2 ChEMBL:CHEMBL1852
DrugBank:DB01220 EvolutionaryTrace:P0A8V2 Genevestigator:P0A8V2
Uniprot:P0A8V2
Length = 1342
Score = 191 (72.3 bits), Expect = 1.2e-21, Sum P(3) = 1.2e-21
Identities = 43/114 (37%), Positives = 64/114 (56%)
Query: 276 ATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQRLKHMVDDK 335
ATP D +I LL+ G +++G TG + V +G Y +L H+VDDK
Sbjct: 1183 ATPVFDGAKEAEIKELLKLGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDK 1242
Query: 336 IHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSD 389
+H+R+ G ++ +QP+ G+A+ GG RFGEME ++GAA L+E L SD
Sbjct: 1243 MHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1296
Score = 134 (52.2 bits), Expect = 1.2e-21, Sum P(3) = 1.2e-21
Identities = 46/159 (28%), Positives = 75/159 (47%)
Query: 42 AGINSIVAILCYTGYNQEDSV-----ILNASAVERG-YFRSMEYLRFRELPAGINSIVAI 95
AGI+ I + YT NQ + + VERG EL G N VA
Sbjct: 746 AGID-IYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQNMRVAF 804
Query: 96 LCYTGYNQEDSVILNASAVERGYFRSVFFRSYKD-AESKRIGDQEEQFEKPNRQTCQGMR 154
+ + GYN EDS++++ V+ F ++ + + ++G +E + PN +
Sbjct: 805 MPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPN------VG 858
Query: 155 NAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENEDEL 193
A KLD+ GI+ G V+G D+++GK +T P+ E +L
Sbjct: 859 EAALSKLDESGIVYIGAEVTGGDILVGK-VT-PKGETQL 895
Score = 67 (28.6 bits), Expect = 9.0e-15, Sum P(3) = 9.0e-15
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 39 ELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSM 77
EL G N VA + + GYN EDS++++ V+ F ++
Sbjct: 793 ELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTI 831
Score = 58 (25.5 bits), Expect = 1.2e-21, Sum P(3) = 1.2e-21
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 230 KFCKIRVRSVRIPQIGDKFASRHGQKG 256
K K+ + R Q GDK A RHG KG
Sbjct: 1048 KIVKVYLAVKRRIQPGDKMAGRHGNKG 1074
Score = 37 (18.1 bits), Expect = 1.0e-11, Sum P(3) = 1.0e-11
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 152 GMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENEDEL 193
GM A+ D G+ A R V I + NEDE+
Sbjct: 703 GMERAV---AVDSGVTAVAKRGGVVQYVDASRIVIKVNEDEM 741
>UNIPROTKB|I3L6M3 [details] [associations]
symbol:LOC100737037 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR007120
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
GeneTree:ENSGT00690000102214 EMBL:CU683880 EMBL:CU914657
Ensembl:ENSSSCT00000030129 OMA:LLNTTEC Uniprot:I3L6M3
Length = 232
Score = 254 (94.5 bits), Expect = 2.8e-21, P = 2.8e-21
Identities = 65/212 (30%), Positives = 120/212 (56%)
Query: 55 GYNQE---DSVILNASAVERGYFRS--MEYLRFRELPAGINSIVAILCYTGYNQEDSVIL 109
GYNQ D+++ + ++ ++ +E + F +LPAG N+ VA++ Y+GY+ ED+++L
Sbjct: 10 GYNQRNRIDTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDALVL 69
Query: 110 NASAVERGYFRSVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGM-RNAIY--DKLDDDGI 166
N ++++RG+ R + +++ K KR +Q F+K R I+ + LD DGI
Sbjct: 70 NKASLDRGFGRCLVYKNAK-CTLKRYTNQT--FDKVMGPVLDAATRKPIWRHEILDADGI 126
Query: 167 IAPGLRVSGDDVVIGKTITLPENEDELEGTT--KRFSKRDGSTFLRNSETGIVDQVMLTL 224
+PG +V V++ K++ + LEG+ ++ +D + + +++VM++
Sbjct: 127 CSPGEKVENKQVLVNKSMPTV-TQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMISS 185
Query: 225 NVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 256
N + K+ +R R P+IGDKF+SRHGQKG
Sbjct: 186 NAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKG 217
Score = 189 (71.6 bits), Expect = 4.0e-14, P = 4.0e-14
Identities = 34/79 (43%), Positives = 57/79 (72%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
MG N R+DTL ++L YP KP+V T+++E + F +LPAG N+ VA++ Y+GY+ ED
Sbjct: 6 MGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIED 65
Query: 61 SVILNASAVERGYFRSMEY 79
+++LN ++++RG+ R + Y
Sbjct: 66 ALVLNKASLDRGFGRCLVY 84
>TIGR_CMR|ECH_0952 [details] [associations]
symbol:ECH_0952 "DNA-directed RNA polymerase, beta
subunit" species:205920 "Ehrlichia chaffeensis str. Arkansas"
[GO:0000345 "cytosolic DNA-directed RNA polymerase complex"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0006351 GO:GO:0003899
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 OMA:QRDLTYA ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
EMBL:AF389473 RefSeq:YP_507740.1 ProteinModelPortal:Q8KWX2
STRING:Q8KWX2 PRIDE:Q8KWX2 GeneID:3927386 KEGG:ech:ECH_0952
PATRIC:20577286 BioCyc:ECHA205920:GJNR-955-MONOMER Uniprot:Q8KWX2
Length = 1380
Score = 193 (73.0 bits), Expect = 2.2e-20, Sum P(3) = 2.2e-20
Identities = 43/114 (37%), Positives = 66/114 (57%)
Query: 276 ATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQRLKHMVDDK 335
A P + +IS LL+ + G +++G G K + +V +G Y +L H+VDDK
Sbjct: 1211 AAPVFEGPKDSQISNLLRLADLDVSGQVDLYDGRIGEKFDRKVTVGYIYMLKLHHLVDDK 1270
Query: 336 IHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSD 389
IH+R+ GP ++ +QP+ G++ GG RFGEME ++GAA L+E L SD
Sbjct: 1271 IHARSVGPYGLVTQQPLGGKSHFGGQRFGEMECWALQAYGAAYTLQEMLTVKSD 1324
Score = 125 (49.1 bits), Expect = 2.2e-20, Sum P(3) = 2.2e-20
Identities = 37/132 (28%), Positives = 64/132 (48%)
Query: 56 YNQEDSVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVE 115
Y + + VI + SA+++G EL G N +VA + + GYN EDS+++++ V+
Sbjct: 799 YVKANDVIADGSAIDQG-----------ELALGKNVLVAFMSWQGYNFEDSIVISSEVVK 847
Query: 116 RGYFRSVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSG 175
+ F S+ ++ + D EK R +++ LDD GI+ G VS
Sbjct: 848 KDVFTSIHIEEFECV----VRDTTLGPEKIMRSVPDINEDSL-SHLDDVGIVNVGAEVSA 902
Query: 176 DDVVIGKTITLP 187
D+++GK P
Sbjct: 903 GDILVGKVTPRP 914
Score = 84 (34.6 bits), Expect = 3.5e-16, Sum P(3) = 3.5e-16
Identities = 16/44 (36%), Positives = 27/44 (61%)
Query: 39 ELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSMEYLRF 82
EL G N +VA + + GYN EDS+++++ V++ F S+ F
Sbjct: 816 ELALGKNVLVAFMSWQGYNFEDSIVISSEVVKKDVFTSIHIEEF 859
Score = 54 (24.1 bits), Expect = 4.0e-13, Sum P(3) = 4.0e-13
Identities = 14/68 (20%), Positives = 33/68 (48%)
Query: 122 VFFRSYKDAESKRIG-D--QEEQFEKPNRQTCQGMRNAIY--DKLDDDGIIAPGLRVSGD 176
+ R++ +++ +G D +F++ N TC R + D + + +IA G +
Sbjct: 756 IVIRAFDQEKNEYLGVDIYNLRKFQRSNHNTCINQRPLVKPGDYVKANDVIADGSAIDQG 815
Query: 177 DVVIGKTI 184
++ +GK +
Sbjct: 816 ELALGKNV 823
Score = 53 (23.7 bits), Expect = 2.2e-20, Sum P(3) = 2.2e-20
Identities = 10/14 (71%), Positives = 10/14 (71%)
Query: 243 QIGDKFASRHGQKG 256
Q GDK A RHG KG
Sbjct: 1090 QPGDKMAGRHGNKG 1103
>TIGR_CMR|CPS_4769 [details] [associations]
symbol:CPS_4769 "DNA-directed RNA polymerase, beta
subunit" species:167879 "Colwellia psychrerythraea 34H" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01321
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641
InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645
InterPro:IPR010243 InterPro:IPR014724 InterPro:IPR015712
InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
OMA:FMTWEGY RefSeq:YP_271413.1 STRING:Q47UV9 PRIDE:Q47UV9
GeneID:3523343 KEGG:cps:CPS_4769 PATRIC:21472355
BioCyc:CPSY167879:GI48-4775-MONOMER Uniprot:Q47UV9
Length = 1342
Score = 190 (71.9 bits), Expect = 4.4e-20, Sum P(3) = 4.4e-20
Identities = 44/114 (38%), Positives = 64/114 (56%)
Query: 276 ATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQRLKHMVDDK 335
ATP D ++I L G V+ +G TGR+ V +G Y +L H+VDDK
Sbjct: 1183 ATPAFDGAAEKEIKELFVLADMPQSGQFVLTDGRTGREFERPVTVGYMYMLKLNHLVDDK 1242
Query: 336 IHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSD 389
+H+R+ G ++ +QP+ G+A+ GG RFGEME ++GAA L+E L SD
Sbjct: 1243 MHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSD 1296
Score = 120 (47.3 bits), Expect = 4.4e-20, Sum P(3) = 4.4e-20
Identities = 32/111 (28%), Positives = 57/111 (51%)
Query: 84 ELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFRSYKD-AESKRIGDQEEQF 142
EL G N +A + + GYN EDS++L+ F ++ + A ++G +E
Sbjct: 794 ELALGQNMRIAFMPWNGYNFEDSMLLSERVAIEDRFTTIHIQELTCIARDTKLGSEEITA 853
Query: 143 EKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENEDEL 193
+ PN + + KLD+ G++ G V+G D+++GK +T P+ E +L
Sbjct: 854 DIPN------VGESALSKLDEAGVVYIGAEVNGGDILVGK-VT-PKGETQL 896
Score = 60 (26.2 bits), Expect = 6.0e-14, Sum P(3) = 6.0e-14
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 39 ELPAGINSIVAILCYTGYNQEDSVILNAS-AVE 70
EL G N +A + + GYN EDS++L+ A+E
Sbjct: 794 ELALGQNMRIAFMPWNGYNFEDSMLLSERVAIE 826
Score = 58 (25.5 bits), Expect = 4.4e-20, Sum P(3) = 4.4e-20
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 230 KFCKIRVRSVRIPQIGDKFASRHGQKG 256
K K+ + R Q GDK A RHG KG
Sbjct: 1049 KIVKVYLAVKRHIQPGDKMAGRHGNKG 1075
Score = 45 (20.9 bits), Expect = 7.4e-11, Sum P(2) = 7.4e-11
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 227 DGYKFCKIRVRSVRIPQIGDKFASRHGQKGTC 258
+GY F + S R+ I D+F + H Q+ TC
Sbjct: 809 NGYNFEDSMLLSERVA-IEDRFTTIHIQELTC 839
Score = 38 (18.4 bits), Expect = 4.9e-18, Sum P(3) = 4.9e-18
Identities = 16/71 (22%), Positives = 32/71 (45%)
Query: 213 ETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQ------IGDKFASRHG-QKGTCGIQYRQ- 264
ET + + L + G K ++ S+R+P I + +R G +K ++ Q
Sbjct: 893 ETQLTPEEKLLRAIFGEKAADVKDSSLRVPNSVKGTIIDVQIFTRDGVEKDARAVEIEQM 952
Query: 265 EVSSNKGEIGD 275
++ K ++GD
Sbjct: 953 QLKEVKKDLGD 963
>TIGR_CMR|APH_1024 [details] [associations]
symbol:APH_1024 "DNA-directed RNA polymerase, beta
subunit" species:212042 "Anaplasma phagocytophilum HZ" [GO:0000345
"cytosolic DNA-directed RNA polymerase complex" evidence=ISS]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 RefSeq:YP_505583.1 ProteinModelPortal:Q2GJ68
STRING:Q2GJ68 PRIDE:Q2GJ68 GeneID:3930425 KEGG:aph:APH_1024
PATRIC:20950798 KO:K03043 OMA:QRDLTYA ProtClustDB:PRK00405
BioCyc:APHA212042:GHPM-1031-MONOMER Gene3D:2.30.150.10
PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013 Uniprot:Q2GJ68
Length = 1383
Score = 191 (72.3 bits), Expect = 4.8e-20, Sum P(3) = 4.8e-20
Identities = 43/114 (37%), Positives = 67/114 (58%)
Query: 276 ATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQRLKHMVDDK 335
A P + +IS LL+ G +++G +G+K + +V +G Y +L H+VDDK
Sbjct: 1215 AAPVFEGPKDAQISRLLELADVDPSGQVDLYDGRSGQKFDRKVTVGYIYMLKLHHLVDDK 1274
Query: 336 IHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEVSD 389
IH+R+ GP ++ +QP+ G++ GG RFGEME ++GAA L+E L SD
Sbjct: 1275 IHARSVGPYGLVTQQPLGGKSHFGGQRFGEMECWALQAYGAAYTLQEMLTVKSD 1328
Score = 123 (48.4 bits), Expect = 4.8e-20, Sum P(3) = 4.8e-20
Identities = 38/132 (28%), Positives = 62/132 (46%)
Query: 56 YNQEDSVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVE 115
Y + + VI + +A++RG EL G N +VA + + GYN EDS+++++ V+
Sbjct: 800 YVRTNDVIADGAAIDRG-----------ELALGKNVLVAFMSWQGYNFEDSIVISSDVVK 848
Query: 116 RGYFRSVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSG 175
R F S+ ++ + D EK R ++ LDD GI+ G VS
Sbjct: 849 RDVFTSIHIEEFECV----VRDTPLGPEKIMRSVPDVNEESL-SHLDDVGIVNIGAEVSA 903
Query: 176 DDVVIGKTITLP 187
V++GK P
Sbjct: 904 GSVLVGKVTPRP 915
Score = 92 (37.4 bits), Expect = 7.2e-17, Sum P(3) = 7.2e-17
Identities = 21/59 (35%), Positives = 33/59 (55%)
Query: 39 ELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSMEYLRF----RELPAGINSIV 93
EL G N +VA + + GYN EDS+++++ V+R F S+ F R+ P G I+
Sbjct: 817 ELALGKNVLVAFMSWQGYNFEDSIVISSDVVKRDVFTSIHIEEFECVVRDTPLGPEKIM 875
Score = 54 (24.1 bits), Expect = 4.8e-20, Sum P(3) = 4.8e-20
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 243 QIGDKFASRHGQKGTCGIQYRQEVSSNKGEIGDATPFNDAVN 284
Q GDK A RHG KG R + + D TP + +N
Sbjct: 1092 QPGDKMAGRHGNKGVIS---RIVPVEDMPHLEDGTPVDIILN 1130
Score = 54 (24.1 bits), Expect = 5.4e-13, Sum P(3) = 5.4e-13
Identities = 11/46 (23%), Positives = 23/46 (50%)
Query: 141 QFEKPNRQTCQGMRNAIY--DKLDDDGIIAPGLRVSGDDVVIGKTI 184
+F++ N TC R + D + + +IA G + ++ +GK +
Sbjct: 779 KFQRSNHNTCINQRPIVKIGDYVRTNDVIADGAAIDRGELALGKNV 824
>UNIPROTKB|F1SPQ0 [details] [associations]
symbol:LOC100737037 "DNA-directed RNA polymerase"
species:9823 "Sus scrofa" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR007646 InterPro:IPR007647
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 Pfam:PF04566 Pfam:PF04567
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
GeneTree:ENSGT00690000102214 OMA:DMIMNPH EMBL:FP565199
Ensembl:ENSSSCT00000000178 Uniprot:F1SPQ0
Length = 902
Score = 254 (94.5 bits), Expect = 1.6e-18, P = 1.6e-18
Identities = 65/212 (30%), Positives = 120/212 (56%)
Query: 55 GYNQE---DSVILNASAVERGYFRS--MEYLRFRELPAGINSIVAILCYTGYNQEDSVIL 109
GYNQ D+++ + ++ ++ +E + F +LPAG N+ VA++ Y+GY+ ED+++L
Sbjct: 695 GYNQRNRIDTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDALVL 754
Query: 110 NASAVERGYFRSVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGM-RNAIY--DKLDDDGI 166
N ++++RG+ R + +++ K KR +Q F+K R I+ + LD DGI
Sbjct: 755 NKASLDRGFGRCLVYKNAK-CTLKRYTNQT--FDKVMGPVLDAATRKPIWRHEILDADGI 811
Query: 167 IAPGLRVSGDDVVIGKTITLPENEDELEGTT--KRFSKRDGSTFLRNSETGIVDQVMLTL 224
+PG +V V++ K++ + LEG+ ++ +D + + +++VM++
Sbjct: 812 CSPGEKVENKQVLVNKSMPTV-TQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMISS 870
Query: 225 NVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 256
N + K+ +R R P+IGDKF+SRHGQKG
Sbjct: 871 NAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKG 902
Score = 189 (71.6 bits), Expect = 2.6e-11, P = 2.6e-11
Identities = 34/79 (43%), Positives = 57/79 (72%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
MG N R+DTL ++L YP KP+V T+++E + F +LPAG N+ VA++ Y+GY+ ED
Sbjct: 691 MGTIGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIED 750
Query: 61 SVILNASAVERGYFRSMEY 79
+++LN ++++RG+ R + Y
Sbjct: 751 ALVLNKASLDRGFGRCLVY 769
>TIGR_CMR|NSE_0678 [details] [associations]
symbol:NSE_0678 "DNA-directed RNA polymerase, beta
subunit" species:222891 "Neorickettsia sennetsu str. Miyayama"
[GO:0000345 "cytosolic DNA-directed RNA polymerase complex"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 InterPro:IPR019462 Pfam:PF00562 Pfam:PF04560
Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF10385 PROSITE:PS01166
PANTHER:PTHR20856 GO:GO:0003677 GO:GO:0006351 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0003899 eggNOG:COG0085
GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
HOGENOM:HOG000218612 KO:K03043 ProtClustDB:PRK00405
Gene3D:2.30.150.10 PANTHER:PTHR20856:SF3 TIGRFAMs:TIGR02013
OMA:FMTWEGY RefSeq:YP_506556.1 ProteinModelPortal:Q2GD90
STRING:Q2GD90 GeneID:3931355 KEGG:nse:NSE_0678 PATRIC:22681375
BioCyc:NSEN222891:GHFU-692-MONOMER Uniprot:Q2GD90
Length = 1358
Score = 187 (70.9 bits), Expect = 2.1e-18, Sum P(2) = 2.1e-18
Identities = 44/122 (36%), Positives = 68/122 (55%)
Query: 268 SNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTYYQR 327
S +G + A + +I LL G G EV+++G TG K + +V +G Y +
Sbjct: 1174 SLRGGVPVAASVFEGPKTDEIERLLVLAGKDPSGQEVLYDGVTGEKFDRKVTVGCKYMLK 1233
Query: 328 LKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERLFEV 387
L H+V+DKIH+R+ G ++ +QP+ G++ GG RFGEME ++GA L+E L
Sbjct: 1234 LHHLVNDKIHARSIGSYSLITQQPLGGKSHFGGQRFGEMECWALQAYGATFALQEMLTIK 1293
Query: 388 SD 389
SD
Sbjct: 1294 SD 1295
Score = 121 (47.7 bits), Expect = 2.1e-18, Sum P(2) = 2.1e-18
Identities = 43/148 (29%), Positives = 66/148 (44%)
Query: 84 ELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFRSYKDA-ESKRIGDQEEQF 142
EL G N +VA L + GYN EDSV+++++ V F SV ++ R+G +E
Sbjct: 785 ELALGRNLVVAFLSWRGYNFEDSVVISSNVVRDDLFTSVHLEGFECVVRDTRLGPEEIT- 843
Query: 143 EKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTI---TLPENEDE--LEGT- 196
+ G+ LD+ GI G V DV++GK + P +E L
Sbjct: 844 -----RDVSGVAEEFLHCLDEFGIACVGANVEAGDVLVGKVTPKSSSPVTPEEKLLRAIF 898
Query: 197 -TKRFSKRDGSTFLRNSETG-IVDQVML 222
K +D S +L +G +VD +L
Sbjct: 899 GEKAIDVKDSSLYLPPGVSGCVVDVKVL 926
Score = 82 (33.9 bits), Expect = 2.4e-14, Sum P(2) = 2.4e-14
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 39 ELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSM 77
EL G N +VA L + GYN EDSV+++++ V F S+
Sbjct: 785 ELALGRNLVVAFLSWRGYNFEDSVVISSNVVRDDLFTSV 823
Score = 54 (24.1 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 243 QIGDKFASRHGQKGTCGIQYRQEVSSNKGEIGDATPFNDAVN 284
Q GDK + RHG KG R + + + D TP + +N
Sbjct: 1063 QPGDKMSGRHGNKGVIS---RIVPAEDMPYLADGTPVDIILN 1101
Score = 38 (18.4 bits), Expect = 8.6e-10, Sum P(2) = 8.6e-10
Identities = 13/48 (27%), Positives = 19/48 (39%)
Query: 226 VDGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEVSSNKGEI 273
+D Y CK R +S I + GQ+ G + KGE+
Sbjct: 740 IDSYTLCKFR-KSNHNTCIHQRCVVHQGQRVKKGDILADGPAIQKGEL 786
Score = 38 (18.4 bits), Expect = 8.6e-10, Sum P(2) = 8.6e-10
Identities = 29/109 (26%), Positives = 44/109 (40%)
Query: 143 EKPNRQTCQGMRN--AIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENEDELEGTTKRF 200
E P T G+ N AIY K++ G I R D V + +T DE++ +
Sbjct: 558 ETPEGATI-GLINSLAIYAKINKYGFIETPYRYVRDGRVTDE-VTYLSAIDEIKANICQA 615
Query: 201 SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFA 249
S +R E G + VD +C+ +V IP+ +FA
Sbjct: 616 S-------VRVDEEGYI--------VDDLVYCRRNYENVFIPRSEVQFA 649
>UNIPROTKB|P0C501 [details] [associations]
symbol:rpoB "DNA-directed RNA polymerase subunit beta"
species:4530 "Oryza sativa" [GO:0009536 "plastid" evidence=IC]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0009507 GO:GO:0009536 GO:GO:0003677 GO:GO:0006351
EMBL:AY522331 GO:GO:0009295 GO:GO:0003899 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 HOGENOM:HOG000218611
ProteinModelPortal:P0C501 Gramene:P0C501 Genevestigator:P0C501
Uniprot:P0C501
Length = 1075
Score = 178 (67.7 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 37/89 (41%), Positives = 50/89 (56%)
Query: 301 GNEVMFNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGG 360
G +F+G TG V +G +Y +L H VD+KIH R+ GP ++ +QP+ GRA+ GG
Sbjct: 928 GKSRIFDGRTGDPFEQPVLIGKSYILKLIHQVDEKIHGRSTGPYSLVTQQPVRGRAKQGG 987
Query: 361 LRFGEMERDCQISHGAAQFLRERLFEVSD 389
R GEME G A L+E L SD
Sbjct: 988 QRIGEMEVWALEGFGVAHILQEILTYKSD 1016
Score = 111 (44.1 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 56/213 (26%), Positives = 89/213 (41%)
Query: 84 ELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFRSYK-DAESKRIGDQEE-Q 141
EL G N +VA + + GYN ED+V+++ V + S R Y+ ++ G E+
Sbjct: 656 ELALGKNVLVAYMPWEGYNFEDAVLISERLVYEDIYTSFHIRKYEIQTDTTSQGSAEKIT 715
Query: 142 FEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENEDELEGTTKRFS 201
E P+ + +RN LD +G++ G V D+++GK +E
Sbjct: 716 KEIPHLEE-HLLRN-----LDRNGVVKLGSWVETGDILVGKLTPQIASESSYIAEAGLLR 769
Query: 202 KRDGSTFLRNSETGIVDQVMLTLNVDGYKFCK-----IRVR----SVRIPQIGDKFASRH 252
G + ET + + V K+ + I VR R ++GDK A RH
Sbjct: 770 AIFGLEVSTSKETSLKLPIGGRGRVIDVKWIQRDPLDIMVRVYILQKREIKVGDKVAGRH 829
Query: 253 GQKGTCG-IQYRQEVSSNKGEIGDATPFNDAVN 284
G KG I RQ++ + D TP + N
Sbjct: 830 GNKGIISKILPRQDMPY----LQDGTPVDMVFN 858
Score = 66 (28.3 bits), Expect = 6.0e-12, Sum P(2) = 6.0e-12
Identities = 17/53 (32%), Positives = 28/53 (52%)
Query: 39 ELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSMEYLRFRELPAGINS 91
EL G N +VA + + GYN ED+V+++ V + S ++R E+ S
Sbjct: 656 ELALGKNVLVAYMPWEGYNFEDAVLISERLVYEDIYTSF-HIRKYEIQTDTTS 707
Score = 44 (20.5 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 18/91 (19%), Positives = 36/91 (39%)
Query: 99 TGYNQEDSVILNASAVERGYFRSVFFRSYK---DAESKRIGDQEEQFEKPNRQTCQGMRN 155
TG ++ ++ S + + + S+K + K I + N+ TC +
Sbjct: 573 TGLERQTALDSRVSVIAEREGKIISTNSHKILLSSSGKTISIPLVTHRRSNKNTCMHQKP 632
Query: 156 AI-YDKLDDDG-IIAPGLRVSGDDVVIGKTI 184
+ K G I+A G G ++ +GK +
Sbjct: 633 RVPRGKSIKKGQILAEGAATVGGELALGKNV 663
>UNIPROTKB|P0C502 [details] [associations]
symbol:rpoB "DNA-directed RNA polymerase subunit beta"
species:39946 "Oryza sativa Indica Group" [GO:0009536 "plastid"
evidence=IC] HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0009507 GO:GO:0009536 GO:GO:0003677 GO:GO:0006351
EMBL:AY522329 GO:GO:0009295 GO:GO:0003899 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 ProtClustDB:CHL00001
RefSeq:YP_654206.1 ProteinModelPortal:P0C502 GeneID:4126922
Gramene:P0C502 Uniprot:P0C502
Length = 1075
Score = 178 (67.7 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 37/89 (41%), Positives = 50/89 (56%)
Query: 301 GNEVMFNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGG 360
G +F+G TG V +G +Y +L H VD+KIH R+ GP ++ +QP+ GRA+ GG
Sbjct: 928 GKSRIFDGRTGDPFEQPVLIGKSYILKLIHQVDEKIHGRSTGPYSLVTQQPVRGRAKQGG 987
Query: 361 LRFGEMERDCQISHGAAQFLRERLFEVSD 389
R GEME G A L+E L SD
Sbjct: 988 QRIGEMEVWALEGFGVAHILQEILTYKSD 1016
Score = 111 (44.1 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 56/213 (26%), Positives = 89/213 (41%)
Query: 84 ELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFRSYK-DAESKRIGDQEE-Q 141
EL G N +VA + + GYN ED+V+++ V + S R Y+ ++ G E+
Sbjct: 656 ELALGKNVLVAYMPWEGYNFEDAVLISERLVYEDIYTSFHIRKYEIQTDTTSQGSAEKIT 715
Query: 142 FEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENEDELEGTTKRFS 201
E P+ + +RN LD +G++ G V D+++GK +E
Sbjct: 716 KEIPHLEE-HLLRN-----LDRNGVVKLGSWVETGDILVGKLTPQIASESSYIAEAGLLR 769
Query: 202 KRDGSTFLRNSETGIVDQVMLTLNVDGYKFCK-----IRVR----SVRIPQIGDKFASRH 252
G + ET + + V K+ + I VR R ++GDK A RH
Sbjct: 770 AIFGLEVSTSKETSLKLPIGGRGRVIDVKWIQRDPLDIMVRVYILQKREIKVGDKVAGRH 829
Query: 253 GQKGTCG-IQYRQEVSSNKGEIGDATPFNDAVN 284
G KG I RQ++ + D TP + N
Sbjct: 830 GNKGIISKILPRQDMPY----LQDGTPVDMVFN 858
Score = 66 (28.3 bits), Expect = 6.0e-12, Sum P(2) = 6.0e-12
Identities = 17/53 (32%), Positives = 28/53 (52%)
Query: 39 ELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSMEYLRFRELPAGINS 91
EL G N +VA + + GYN ED+V+++ V + S ++R E+ S
Sbjct: 656 ELALGKNVLVAYMPWEGYNFEDAVLISERLVYEDIYTSF-HIRKYEIQTDTTS 707
Score = 44 (20.5 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 18/91 (19%), Positives = 36/91 (39%)
Query: 99 TGYNQEDSVILNASAVERGYFRSVFFRSYK---DAESKRIGDQEEQFEKPNRQTCQGMRN 155
TG ++ ++ S + + + S+K + K I + N+ TC +
Sbjct: 573 TGLERQTALDSRVSVIAEREGKIISTNSHKILLSSSGKTISIPLVTHRRSNKNTCMHQKP 632
Query: 156 AI-YDKLDDDG-IIAPGLRVSGDDVVIGKTI 184
+ K G I+A G G ++ +GK +
Sbjct: 633 RVPRGKSIKKGQILAEGAATVGGELALGKNV 663
>UNIPROTKB|P0C503 [details] [associations]
symbol:rpoB "DNA-directed RNA polymerase subunit beta"
species:39947 "Oryza sativa Japonica Group" [GO:0009536 "plastid"
evidence=IC] HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0009507 GO:GO:0009536 GO:GO:0003677 GO:GO:0006351 EMBL:X15901
EMBL:AY522330 GenomeReviews:AY522330_GR GO:GO:0009295 GO:GO:0003899
eggNOG:COG0085 GO:GO:0032549 Gene3D:2.40.270.10 Gene3D:2.40.50.150
KO:K03043 ProtClustDB:CHL00001 PIR:JQ0213 RefSeq:NP_039373.1
ProteinModelPortal:P0C503 STRING:P0C503
EnsemblPlants:LOC_Osp1g00240.1 GeneID:3131432 KEGG:osa:3131432
Gramene:P0C503 OMA:HFLVSEK Uniprot:P0C503
Length = 1075
Score = 178 (67.7 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 37/89 (41%), Positives = 50/89 (56%)
Query: 301 GNEVMFNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGG 360
G +F+G TG V +G +Y +L H VD+KIH R+ GP ++ +QP+ GRA+ GG
Sbjct: 928 GKSRIFDGRTGDPFEQPVLIGKSYILKLIHQVDEKIHGRSTGPYSLVTQQPVRGRAKQGG 987
Query: 361 LRFGEMERDCQISHGAAQFLRERLFEVSD 389
R GEME G A L+E L SD
Sbjct: 988 QRIGEMEVWALEGFGVAHILQEILTYKSD 1016
Score = 111 (44.1 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 56/213 (26%), Positives = 89/213 (41%)
Query: 84 ELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFRSYK-DAESKRIGDQEE-Q 141
EL G N +VA + + GYN ED+V+++ V + S R Y+ ++ G E+
Sbjct: 656 ELALGKNVLVAYMPWEGYNFEDAVLISERLVYEDIYTSFHIRKYEIQTDTTSQGSAEKIT 715
Query: 142 FEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENEDELEGTTKRFS 201
E P+ + +RN LD +G++ G V D+++GK +E
Sbjct: 716 KEIPHLEE-HLLRN-----LDRNGVVKLGSWVETGDILVGKLTPQIASESSYIAEAGLLR 769
Query: 202 KRDGSTFLRNSETGIVDQVMLTLNVDGYKFCK-----IRVR----SVRIPQIGDKFASRH 252
G + ET + + V K+ + I VR R ++GDK A RH
Sbjct: 770 AIFGLEVSTSKETSLKLPIGGRGRVIDVKWIQRDPLDIMVRVYILQKREIKVGDKVAGRH 829
Query: 253 GQKGTCG-IQYRQEVSSNKGEIGDATPFNDAVN 284
G KG I RQ++ + D TP + N
Sbjct: 830 GNKGIISKILPRQDMPY----LQDGTPVDMVFN 858
Score = 66 (28.3 bits), Expect = 6.0e-12, Sum P(2) = 6.0e-12
Identities = 17/53 (32%), Positives = 28/53 (52%)
Query: 39 ELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSMEYLRFRELPAGINS 91
EL G N +VA + + GYN ED+V+++ V + S ++R E+ S
Sbjct: 656 ELALGKNVLVAYMPWEGYNFEDAVLISERLVYEDIYTSF-HIRKYEIQTDTTS 707
Score = 44 (20.5 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 18/91 (19%), Positives = 36/91 (39%)
Query: 99 TGYNQEDSVILNASAVERGYFRSVFFRSYK---DAESKRIGDQEEQFEKPNRQTCQGMRN 155
TG ++ ++ S + + + S+K + K I + N+ TC +
Sbjct: 573 TGLERQTALDSRVSVIAEREGKIISTNSHKILLSSSGKTISIPLVTHRRSNKNTCMHQKP 632
Query: 156 AI-YDKLDDDG-IIAPGLRVSGDDVVIGKTI 184
+ K G I+A G G ++ +GK +
Sbjct: 633 RVPRGKSIKKGQILAEGAATVGGELALGKNV 663
>UNIPROTKB|Q6ENI4 [details] [associations]
symbol:rpoB "DNA-directed RNA polymerase subunit beta"
species:4536 "Oryza nivara" [GO:0009536 "plastid" evidence=IC]
HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR010243 InterPro:IPR014724
InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560 Pfam:PF04561
Pfam:PF04563 Pfam:PF04565 PROSITE:PS01166 PANTHER:PTHR20856
GO:GO:0009507 GO:GO:0009536 GO:GO:0003677 GO:GO:0006351
EMBL:AP006728 GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10
Gene3D:2.40.50.150 RefSeq:YP_052739.1 ProteinModelPortal:Q6ENI4
GeneID:2885962 Gramene:Q6ENI4 ProtClustDB:CHL00001 Uniprot:Q6ENI4
Length = 1075
Score = 178 (67.7 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 37/89 (41%), Positives = 50/89 (56%)
Query: 301 GNEVMFNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGG 360
G +F+G TG V +G +Y +L H VD+KIH R+ GP ++ +QP+ GRA+ GG
Sbjct: 928 GKSRIFDGRTGDPFEQPVLIGKSYILKLIHQVDEKIHGRSTGPYSLVTQQPVRGRAKQGG 987
Query: 361 LRFGEMERDCQISHGAAQFLRERLFEVSD 389
R GEME G A L+E L SD
Sbjct: 988 QRIGEMEVWALEGFGVAHILQEILTYKSD 1016
Score = 111 (44.1 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 56/213 (26%), Positives = 89/213 (41%)
Query: 84 ELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFRSYK-DAESKRIGDQEE-Q 141
EL G N +VA + + GYN ED+V+++ V + S R Y+ ++ G E+
Sbjct: 656 ELALGKNVLVAYMPWEGYNFEDAVLISERLVYEDIYTSFHIRKYEIQTDTTSQGSAEKIT 715
Query: 142 FEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENEDELEGTTKRFS 201
E P+ + +RN LD +G++ G V D+++GK +E
Sbjct: 716 KEIPHLEE-HLLRN-----LDRNGVVKLGSWVETGDILVGKLTPQIASESSYIAEAGLLR 769
Query: 202 KRDGSTFLRNSETGIVDQVMLTLNVDGYKFCK-----IRVR----SVRIPQIGDKFASRH 252
G + ET + + V K+ + I VR R ++GDK A RH
Sbjct: 770 AIFGLEVSTSKETSLKLPIGGRGRVIDVKWIQRDPLDIMVRVYILQKREIKVGDKVAGRH 829
Query: 253 GQKGTCG-IQYRQEVSSNKGEIGDATPFNDAVN 284
G KG I RQ++ + D TP + N
Sbjct: 830 GNKGIISKILPRQDMPY----LQDGTPVDMVFN 858
Score = 66 (28.3 bits), Expect = 6.0e-12, Sum P(2) = 6.0e-12
Identities = 17/53 (32%), Positives = 28/53 (52%)
Query: 39 ELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSMEYLRFRELPAGINS 91
EL G N +VA + + GYN ED+V+++ V + S ++R E+ S
Sbjct: 656 ELALGKNVLVAYMPWEGYNFEDAVLISERLVYEDIYTSF-HIRKYEIQTDTTS 707
Score = 44 (20.5 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 18/91 (19%), Positives = 36/91 (39%)
Query: 99 TGYNQEDSVILNASAVERGYFRSVFFRSYK---DAESKRIGDQEEQFEKPNRQTCQGMRN 155
TG ++ ++ S + + + S+K + K I + N+ TC +
Sbjct: 573 TGLERQTALDSRVSVIAEREGKIISTNSHKILLSSSGKTISIPLVTHRRSNKNTCMHQKP 632
Query: 156 AI-YDKLDDDG-IIAPGLRVSGDDVVIGKTI 184
+ K G I+A G G ++ +GK +
Sbjct: 633 RVPRGKSIKKGQILAEGAATVGGELALGKNV 663
>UNIPROTKB|H7C0D9 [details] [associations]
symbol:POLR1B "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR009674
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF06883
PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0005634 GO:GO:0003677
GO:GO:0006351 EMBL:AC012442 GO:GO:0003899 GO:GO:0032549
Gene3D:2.40.270.10 HGNC:HGNC:20454 Gene3D:2.40.50.150
Ensembl:ENST00000458012 Bgee:H7C0D9 Uniprot:H7C0D9
Length = 308
Score = 166 (63.5 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 58/182 (31%), Positives = 84/182 (46%)
Query: 78 EYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR-SVFFRSYKDAESK-RI 135
+Y P G N+IVA++ YTGY+ ED++I+N ++ ERG+ SV+ + D K +
Sbjct: 113 DYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQ 172
Query: 136 GDQEEQFE-KPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENEDELE 194
GD F KP + KLDDDG+ G ++ D + L E +
Sbjct: 173 GDSSLVFGIKPGDPR-------VLQKLDDDGLPFIGAKLQYGDPYYSY-LNLNTGESFV- 223
Query: 195 GTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQ 254
+ K + + N + D +K I +R R P IGDKFASRHGQ
Sbjct: 224 ----MYYKSKENCVVDNIKVCSNDT-----GSGKFKCVCITMRVPRNPTIGDKFASRHGQ 274
Query: 255 KG 256
KG
Sbjct: 275 KG 276
Score = 116 (45.9 bits), Expect = 0.00050, P = 0.00050
Identities = 22/55 (40%), Positives = 33/55 (60%)
Query: 25 PLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSMEY 79
PLV +Y P G N+IVA++ YTGY+ ED++I+N ++ ERG+ Y
Sbjct: 105 PLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVY 159
>UNIPROTKB|P21421 [details] [associations]
symbol:rpoB "DNA-directed RNA polymerase subunit beta"
species:36329 "Plasmodium falciparum 3D7" [GO:0020011 "apicoplast"
evidence=NAS] HAMAP:MF_01321 InterPro:IPR007120 InterPro:IPR007121
InterPro:IPR007641 InterPro:IPR007645 InterPro:IPR010243
InterPro:IPR014724 InterPro:IPR015712 Pfam:PF00562 Pfam:PF04560
Pfam:PF04565 PROSITE:PS01166 PANTHER:PTHR20856 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 GO:GO:0020011 GO:GO:0032549
Gene3D:2.40.270.10 Gene3D:2.40.50.150 PANTHER:PTHR20856:SF3
EMBL:X75544 EMBL:X95275 EMBL:X52177 PIR:S72282
ProteinModelPortal:P21421 GenomeReviews:X95275_GR Uniprot:P21421
Length = 1024
Score = 137 (53.3 bits), Expect = 9.6e-09, Sum P(2) = 9.6e-09
Identities = 32/83 (38%), Positives = 42/83 (50%)
Query: 307 NGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEM 366
N TG IN + L YY +L HM+ DK R G L +QP++G + GG RFGEM
Sbjct: 879 NPFTGNMINNSICLNNIYYYKLIHMIKDKFRYRFIGLYSELTQQPIKGNTKQGGQRFGEM 938
Query: 367 ERDCQISHGAAQFLRERLFEVSD 389
E + GA+ +E SD
Sbjct: 939 EVWALEAFGASYLFKEFFTYKSD 961
Score = 78 (32.5 bits), Expect = 9.6e-09, Sum P(2) = 9.6e-09
Identities = 47/200 (23%), Positives = 80/200 (40%)
Query: 84 ELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSVFFRSYKDAESKRIGDQEEQFE 143
E G N +V Y GY ED++I++ + + S+ Y+ S I + +
Sbjct: 596 EYSLGNNLLVGYGSYLGYEYEDAIIISRKILYNNLYTSLHLNIYEI--SLNIINNIPEIC 653
Query: 144 KPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLP---ENEDELE------ 194
N +N + LD GII G + ++++I K + +P N+ +
Sbjct: 654 SINLSKMY-YKNIKH--LDKYGIIKEGTYILANNILISKLMFMPFIFNNKSLINIINFLF 710
Query: 195 GTTKRFSKRDG--STFL---RNSETGIVDQVMLTLNVDGYKFCKIRVRS--VRIPQIGDK 247
G+ R K ST R + I+ + + K R+ + Q+GDK
Sbjct: 711 GSKLRIFKNKPIISTIHDIGRVIKIEILPNHLYNKTEKNNIYLKFRIYIGIQKYLQLGDK 770
Query: 248 FASRHGQKGTCGIQYRQEVS 267
+RHG KG I Y E++
Sbjct: 771 ICNRHGHKGI--ISYISEIN 788
Score = 62 (26.9 bits), Expect = 4.2e-07, Sum P(2) = 4.2e-07
Identities = 15/59 (25%), Positives = 28/59 (47%)
Query: 39 ELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFRSMEYLRFRELPAGINSIVAILC 97
E G N +V Y GY ED++I++ + + S+ +L E+ I + + +C
Sbjct: 596 EYSLGNNLLVGYGSYLGYEYEDAIIISRKILYNNLYTSL-HLNIYEISLNIINNIPEIC 653
Score = 43 (20.2 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 221 MLTLNVDGYKFCKIRVRSVRIP 242
+LT+N + +K C I + IP
Sbjct: 445 ILTINKNTFKICNITQNIIYIP 466
>UNIPROTKB|F1NRJ5 [details] [associations]
symbol:F1NRJ5 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
InterPro:IPR007120 InterPro:IPR007642 InterPro:IPR007644
InterPro:IPR007645 InterPro:IPR009674 InterPro:IPR015712
Pfam:PF00562 Pfam:PF04561 Pfam:PF04563 Pfam:PF04565 Pfam:PF06883
PANTHER:PTHR20856 GO:GO:0005634 GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 GO:GO:0032549 Gene3D:2.40.270.10
GeneTree:ENSGT00550000074993 EMBL:AADN02041199 IPI:IPI00820874
Ensembl:ENSGALT00000039028 Uniprot:F1NRJ5
Length = 760
Score = 156 (60.0 bits), Expect = 5.9e-08, Sum P(2) = 5.9e-08
Identities = 29/73 (39%), Positives = 45/73 (61%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
MG + N+ R D ++L+ P PLV R +Y P G NS+VA++ Y+GY+ ED
Sbjct: 586 MGFPVYNYKDRSDNKLYLLHTPQSPLVRPRMYDYYGMDSYPVGTNSVVAVISYSGYDMED 645
Query: 61 SVILNASAVERGY 73
++I+N S+ ERG+
Sbjct: 646 AMIVNKSSWERGF 658
Score = 47 (21.6 bits), Expect = 5.9e-08, Sum P(2) = 5.9e-08
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 206 STFLRNSETGIVDQVMLTLNVDGY-KFCK 233
+ + +N E GIVD + L N G KF K
Sbjct: 728 TVYYQNKEVGIVDNIKLCSNDRGTGKFKK 756
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.322 0.138 0.407 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 451 451 0.00092 118 3 11 22 0.36 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 89
No. of states in DFA: 601 (64 KB)
Total size of DFA: 251 KB (2134 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:02
No. of threads or processors used: 24
Search cpu time: 34.84u 0.08s 34.92t Elapsed: 00:00:09
Total cpu time: 34.87u 0.08s 34.95t Elapsed: 00:00:11
Start: Thu Aug 15 12:48:52 2013 End: Thu Aug 15 12:49:03 2013