RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7583
(451 letters)
>d1twfb_ e.29.1.1 (B:) RBP2 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 1207
Score = 423 bits (1089), Expect = e-138
Identities = 266/487 (54%), Positives = 328/487 (67%), Gaps = 83/487 (17%)
Query: 1 MGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTGYNQED 60
MGV++TN++VRMDT+A++LYYP KPL TTR+MEYL+FRELPAG N+IVAI CY+GYNQED
Sbjct: 761 MGVFLTNYNVRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQED 820
Query: 61 SVILNASAVERGYFRSMEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGYFR 120
S+I+N S+++RG FRS+
Sbjct: 821 SMIMNQSSIDRGLFRSL------------------------------------------- 837
Query: 121 SVFFRSYKDAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVI 180
FFRSY D E K E FEKP R M++ YDKLDDDG+IAPG+RVSG+DV+I
Sbjct: 838 --FFRSYMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLIAPGVRVSGEDVII 895
Query: 181 GKTITLPENEDELEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVR 240
GKT + +E+EL T SKRD ST LR++E GIVDQV++T N DG KF K+RVR+ +
Sbjct: 896 GKTTPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLVTTNQDGLKFVKVRVRTTK 955
Query: 241 IPQIGDKFASRHGQKGTCGIQYRQE----------------------------------- 265
IPQIGDKFASRHGQKGT GI YR+E
Sbjct: 956 IPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIECLLS 1015
Query: 266 -VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEVMFNGHTGRKINAQVFLGPTY 324
V++ G GDA+PF D + V+ IS LL+E+GYQ RG EVM+NGHTG+K+ AQ+F GPTY
Sbjct: 1016 KVAALSGNEGDASPFTD-ITVEGISKLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTY 1074
Query: 325 YQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGAAQFLRERL 384
YQRL+HMVDDKIH+RARGP+Q+L RQP+EGR+RDGGLRFGEMERDC I+HGAA FL+ERL
Sbjct: 1075 YQRLRHMVDDKIHARARGPMQVLTRQPVEGRSRDGGLRFGEMERDCMIAHGAASFLKERL 1134
Query: 385 FEVSDPYRIHVCNFCGLIA-IANMRNNTFECKGCKNKTQISQVRLPYAAKLLFQELMSMN 443
E SD +R+H+C CGL+ IA + +N FECKGC NK I Q+ +PYAAKLLFQELM+MN
Sbjct: 1135 MEASDAFRVHICGICGLMTVIAKLNHNQFECKGCDNKIDIYQIHIPYAAKLLFQELMAMN 1194
Query: 444 IAPRLMV 450
I PRL
Sbjct: 1195 ITPRLYT 1201
>d1smyc_ e.29.1.1 (C:) RNA-polymerase beta {Thermus thermophilus
[TaxId: 274]}
Length = 1119
Score = 322 bits (827), Expect = e-100
Identities = 103/493 (20%), Positives = 186/493 (37%), Gaps = 120/493 (24%)
Query: 53 YTGYNQEDSVILNASAVERGYFRSMEY-LRFRELPAGINSIVAILCYTGYNQEDSVILNA 111
T +Q V++ V +G + L G N +VAI+ + GYN ED+++++
Sbjct: 634 GTALDQRPRVVVGQR-VRKGDLLADGPASENGFLALGQNVLVAIMPFDGYNFEDAIVISE 692
Query: 112 SAVERGYFRSVFFRSYK-DAESKRIGDQEEQFEKPNRQTCQGMRNAIYDKLDDDGIIAPG 170
++R ++ S+ Y+ +A ++G + + P+ + A LD++G++ G
Sbjct: 693 ELLKRDFYTSIHIERYEIEARDTKLGPERITRDIPH------LSEAALRDLDEEGVVRIG 746
Query: 171 LRVSGDDVVIGKTITLPENEDELEGT-------TKRFSKRDGSTFLRNSETGIVDQV--- 220
V D+++G+T E+E E K +D S + E GIV +
Sbjct: 747 AEVKPGDILVGRTSFKGESEPTPEERLLRSIFGEKARDVKDTSLRVPPGEGGIVVRTVRL 806
Query: 221 -----MLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQE---------- 265
+ L + ++ V R Q+GDK A+RHG KG E
Sbjct: 807 RRGDPGVELKPGVREVVRVYVAQKRKLQVGDKLANRHGNKGVVAKILPVEDMPHLPDGTP 866
Query: 266 --------------------------VSSNKGEIGDATPFNDAVNVQKISTLLQEYGYQ- 298
G+ + F+ A +I LL +
Sbjct: 867 VDVILNPLGVPSRMNLGQILETHLGLAGYFLGQRYISPIFDGA-KEPEIKELLAQAFEVY 925
Query: 299 ------------------------------------------LRGNEVMFNGHTGRKINA 316
L+G V+++G TG I
Sbjct: 926 FGKRKGEGFGVDKREVEVLRRAEKLGLVTPGKTPEEQLKELFLQGKVVLYDGRTGEPIEG 985
Query: 317 QVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFGEMERDCQISHGA 376
+ +G + +L HMV+DK+H+R+ GP ++ +QP+ G+A+ GG RFGEME ++GA
Sbjct: 986 PIVVGQMFIMKLYHMVEDKMHARSTGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAYGA 1045
Query: 377 AQFLRERLFEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKNKTQISQVRLPYAAKLLF 436
A L+E L SD + + + +P + ++L
Sbjct: 1046 AHTLQEMLTLKSDDIEGRNA----------------AYEAIIKGEDVPEPSVPESFRVLV 1089
Query: 437 QELMSMNIAPRLM 449
+EL ++ + + +
Sbjct: 1090 KELQALALDVQTL 1102
>d2ct7a1 g.44.1.4 (A:8-80) Ring finger protein 31 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 73
Score = 25.8 bits (56), Expect = 2.8
Identities = 9/42 (21%), Positives = 12/42 (28%), Gaps = 2/42 (4%)
Query: 378 QFLRERLFEVSDPYRIHVCNFCGLIAIANMRNNTFECKGCKN 419
+ L E + DP + C C I C C
Sbjct: 5 KKLTEGVLM-RDP-KFLWCAQCSFGFIYEREQLEATCPQCHQ 44
>d1v9sa1 c.61.1.1 (A:1-208) Uracil PRTase, Upp {Thermus thermophilus
[TaxId: 274]}
Length = 208
Score = 26.1 bits (57), Expect = 8.8
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 156 AIYDKLDDDGIIAPGLRVSGD 176
AI ++L+D G I PGL +GD
Sbjct: 182 AIDERLNDHGYIVPGLGDAGD 202
>d1i5ea_ c.61.1.1 (A:) Uracil PRTase, Upp {Bacillus caldolyticus
[TaxId: 1394]}
Length = 208
Score = 26.1 bits (57), Expect = 8.8
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 156 AIYDKLDDDGIIAPGLRVSGD 176
A+ ++L+D G I PGL +GD
Sbjct: 182 ALDERLNDHGYIVPGLGDAGD 202
>d1j9ja_ c.106.1.1 (A:) SurE homolog TM1662 {Thermotoga maritima
[TaxId: 2336]}
Length = 247
Score = 25.9 bits (56), Expect = 9.4
Identities = 7/24 (29%), Positives = 11/24 (45%), Gaps = 6/24 (25%)
Query: 163 DDGIIAPGLRV------SGDDVVI 180
DDGI + G+ V +V +
Sbjct: 8 DDGIQSKGIIVLAELLSEEHEVFV 31
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.138 0.407
Gapped
Lambda K H
0.267 0.0549 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,654,302
Number of extensions: 78451
Number of successful extensions: 183
Number of sequences better than 10.0: 1
Number of HSP's gapped: 178
Number of HSP's successfully gapped: 13
Length of query: 451
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 363
Effective length of database: 1,199,356
Effective search space: 435366228
Effective search space used: 435366228
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.0 bits)