BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7584
(67 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|312381454|gb|EFR27200.1| hypothetical protein AND_06234 [Anopheles darlingi]
Length = 1954
Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats.
Identities = 61/65 (93%), Positives = 64/65 (98%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
L+GTTKRF+KRDGSTFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 881 LDGTTKRFTKRDGSTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRH 940
Query: 63 GQKGT 67
GQKGT
Sbjct: 941 GQKGT 945
>gi|170042980|ref|XP_001849183.1| DNA-directed RNA polymerase II 140 kDa polypeptide [Culex
quinquefasciatus]
gi|167866385|gb|EDS29768.1| DNA-directed RNA polymerase II 140 kDa polypeptide [Culex
quinquefasciatus]
Length = 1176
Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats.
Identities = 61/65 (93%), Positives = 64/65 (98%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
L+GTTKR+SKRDGSTFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 882 LDGTTKRYSKRDGSTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRH 941
Query: 63 GQKGT 67
GQKGT
Sbjct: 942 GQKGT 946
>gi|324120616|dbj|BAJ78699.1| RNA polymerase II second largest subunit [Phraortes illepidus]
Length = 1150
Score = 131 bits (330), Expect = 5e-29, Method: Composition-based stats.
Identities = 61/65 (93%), Positives = 63/65 (96%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
LEGTTKRF+KRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 856 LEGTTKRFTKRDASTFLRNSETGIVDQVMLTLNAEGYKFCKIRVRSVRIPQIGDKFASRH 915
Query: 63 GQKGT 67
GQKGT
Sbjct: 916 GQKGT 920
>gi|324120626|dbj|BAJ78704.1| RNA polymerase II second largest subunit [Euconocephalus varius]
Length = 1175
Score = 131 bits (330), Expect = 5e-29, Method: Composition-based stats.
Identities = 61/65 (93%), Positives = 63/65 (96%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
LEGTTKRF+KRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 881 LEGTTKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRH 940
Query: 63 GQKGT 67
GQKGT
Sbjct: 941 GQKGT 945
>gi|324120640|dbj|BAJ78711.1| RNA polymerase II second largest subunit [Blattella nipponica]
Length = 1175
Score = 131 bits (329), Expect = 5e-29, Method: Composition-based stats.
Identities = 61/65 (93%), Positives = 63/65 (96%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
LEGTTKRF+KRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 881 LEGTTKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRH 940
Query: 63 GQKGT 67
GQKGT
Sbjct: 941 GQKGT 945
>gi|357621065|gb|EHJ73034.1| hypothetical protein KGM_12615 [Danaus plexippus]
Length = 1176
Score = 131 bits (329), Expect = 5e-29, Method: Composition-based stats.
Identities = 61/65 (93%), Positives = 63/65 (96%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
LEGTTKRF+KRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 881 LEGTTKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRH 940
Query: 63 GQKGT 67
GQKGT
Sbjct: 941 GQKGT 945
>gi|324120622|dbj|BAJ78702.1| RNA polymerase II second largest subunit [Karoophasma biedouwense]
Length = 1176
Score = 131 bits (329), Expect = 5e-29, Method: Composition-based stats.
Identities = 61/65 (93%), Positives = 63/65 (96%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
LEGTTKRF+KRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 881 LEGTTKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRH 940
Query: 63 GQKGT 67
GQKGT
Sbjct: 941 GQKGT 945
>gi|324120638|dbj|BAJ78710.1| RNA polymerase II second largest subunit [Tenodera aridifolia]
Length = 1175
Score = 131 bits (329), Expect = 6e-29, Method: Composition-based stats.
Identities = 61/65 (93%), Positives = 63/65 (96%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
LEGTTKRF+KRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 881 LEGTTKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRH 940
Query: 63 GQKGT 67
GQKGT
Sbjct: 941 GQKGT 945
>gi|324120652|dbj|BAJ78717.1| RNA polymerase II second largest subunit [Bemisia tabaci]
Length = 1176
Score = 130 bits (328), Expect = 7e-29, Method: Composition-based stats.
Identities = 61/65 (93%), Positives = 63/65 (96%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
LEGTTKR+SKRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 881 LEGTTKRYSKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRH 940
Query: 63 GQKGT 67
GQKGT
Sbjct: 941 GQKGT 945
>gi|324120636|dbj|BAJ78709.1| RNA polymerase II second largest subunit [Zorotypus sp. 154-1]
Length = 1173
Score = 130 bits (328), Expect = 7e-29, Method: Composition-based stats.
Identities = 61/65 (93%), Positives = 63/65 (96%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
LEGTTKRF+KRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 879 LEGTTKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRH 938
Query: 63 GQKGT 67
GQKGT
Sbjct: 939 GQKGT 943
>gi|324120642|dbj|BAJ78712.1| RNA polymerase II second largest subunit [Reticulitermes speratus]
Length = 1150
Score = 130 bits (328), Expect = 7e-29, Method: Composition-based stats.
Identities = 61/65 (93%), Positives = 63/65 (96%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
LEGTTKRF+KRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 856 LEGTTKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRH 915
Query: 63 GQKGT 67
GQKGT
Sbjct: 916 GQKGT 920
>gi|347970296|ref|XP_313416.4| AGAP003648-PA [Anopheles gambiae str. PEST]
gi|333468866|gb|EAA08858.4| AGAP003648-PA [Anopheles gambiae str. PEST]
Length = 1175
Score = 130 bits (328), Expect = 9e-29, Method: Composition-based stats.
Identities = 60/65 (92%), Positives = 64/65 (98%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
L+GTTKR++KRDGSTFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 881 LDGTTKRYTKRDGSTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRH 940
Query: 63 GQKGT 67
GQKGT
Sbjct: 941 GQKGT 945
>gi|324120662|dbj|BAJ78722.1| RNA polymerase II second largest subunit [Protohermes grandis]
Length = 1175
Score = 130 bits (328), Expect = 9e-29, Method: Composition-based stats.
Identities = 60/65 (92%), Positives = 63/65 (96%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
LEGTTKRF+KRD STFLRNSETG+VDQVMLTLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 881 LEGTTKRFTKRDASTFLRNSETGVVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRH 940
Query: 63 GQKGT 67
GQKGT
Sbjct: 941 GQKGT 945
>gi|403182531|gb|EJY57456.1| AAEL017213-PA [Aedes aegypti]
Length = 1176
Score = 130 bits (327), Expect = 9e-29, Method: Composition-based stats.
Identities = 60/65 (92%), Positives = 64/65 (98%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
L+GTTKR++KRDGSTFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 882 LDGTTKRYTKRDGSTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRH 941
Query: 63 GQKGT 67
GQKGT
Sbjct: 942 GQKGT 946
>gi|324120650|dbj|BAJ78716.1| RNA polymerase II second largest subunit [Anacanthocoris
striicornis]
Length = 1175
Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats.
Identities = 60/65 (92%), Positives = 63/65 (96%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
LEGTTK+F+KRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 881 LEGTTKKFTKRDASTFLRNSETGIVDQVMLTLNAEGYKFCKIRVRSVRIPQIGDKFASRH 940
Query: 63 GQKGT 67
GQKGT
Sbjct: 941 GQKGT 945
>gi|324120608|dbj|BAJ78695.1| RNA polymerase II second largest subunit [Epiophlebia superstes]
Length = 1175
Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats.
Identities = 60/65 (92%), Positives = 63/65 (96%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
LEGTTKRF+KRD STFLRNSETGIVDQVM+TLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 881 LEGTTKRFTKRDASTFLRNSETGIVDQVMITLNSEGYKFCKIRVRSVRIPQIGDKFASRH 940
Query: 63 GQKGT 67
GQKGT
Sbjct: 941 GQKGT 945
>gi|324120594|dbj|BAJ78688.1| RNA polymerase II second largest subunit [Metriocampa sp. 44]
Length = 1176
Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats.
Identities = 61/65 (93%), Positives = 63/65 (96%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
LEGTTKRFSKRD STFLRNSETGIVDQVM+TLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 882 LEGTTKRFSKRDASTFLRNSETGIVDQVMVTLNNEGYKFCKIRVRSVRIPQIGDKFASRH 941
Query: 63 GQKGT 67
GQKGT
Sbjct: 942 GQKGT 946
>gi|324120610|dbj|BAJ78696.1| RNA polymerase II second largest subunit [Mnais pruinosa pruinosa]
Length = 1175
Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats.
Identities = 60/65 (92%), Positives = 63/65 (96%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
LEGTTKRF+KRD STFLRNSETGIVDQVM+TLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 881 LEGTTKRFTKRDASTFLRNSETGIVDQVMITLNSEGYKFCKIRVRSVRIPQIGDKFASRH 940
Query: 63 GQKGT 67
GQKGT
Sbjct: 941 GQKGT 945
>gi|324120630|dbj|BAJ78706.1| RNA polymerase II second largest subunit [Oyamia lugubris]
Length = 1175
Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats.
Identities = 60/65 (92%), Positives = 63/65 (96%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
LEGTTKR++KRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 881 LEGTTKRYTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRH 940
Query: 63 GQKGT 67
GQKGT
Sbjct: 941 GQKGT 945
>gi|324120628|dbj|BAJ78705.1| RNA polymerase II second largest subunit [Teleogryllus emma]
Length = 1174
Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats.
Identities = 60/65 (92%), Positives = 63/65 (96%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
LEGTTKR++KRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 880 LEGTTKRYTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRH 939
Query: 63 GQKGT 67
GQKGT
Sbjct: 940 GQKGT 944
>gi|324120648|dbj|BAJ78715.1| RNA polymerase II second largest subunit [Cryptotympana facialis]
Length = 1175
Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats.
Identities = 60/65 (92%), Positives = 63/65 (96%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
LEGTTKR++KRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 881 LEGTTKRYTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRH 940
Query: 63 GQKGT 67
GQKGT
Sbjct: 941 GQKGT 945
>gi|324120602|dbj|BAJ78692.1| RNA polymerase II second largest subunit [Nipponatelura sp. 66-1]
Length = 1175
Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats.
Identities = 60/65 (92%), Positives = 63/65 (96%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
LEGTTKR++KRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 881 LEGTTKRYTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRH 940
Query: 63 GQKGT 67
GQKGT
Sbjct: 941 GQKGT 945
>gi|324120624|dbj|BAJ78703.1| RNA polymerase II second largest subunit [Nomadacris japonica]
Length = 1173
Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats.
Identities = 60/65 (92%), Positives = 63/65 (96%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
LEGTTKR++KRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 879 LEGTTKRYTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRH 938
Query: 63 GQKGT 67
GQKGT
Sbjct: 939 GQKGT 943
>gi|324120664|dbj|BAJ78723.1| RNA polymerase II second largest subunit [Inocellia japonica]
Length = 1175
Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats.
Identities = 59/65 (90%), Positives = 63/65 (96%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
LEGTTKR++KRD STFLRNSETG+VDQVMLTLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 881 LEGTTKRYTKRDASTFLRNSETGVVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRH 940
Query: 63 GQKGT 67
GQKGT
Sbjct: 941 GQKGT 945
>gi|324120596|dbj|BAJ78689.1| RNA polymerase II second largest subunit [Lepidocampa weberi]
Length = 1179
Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats.
Identities = 59/65 (90%), Positives = 63/65 (96%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
LEGTT+RF+KRD STFLRNSETGIVDQVM+TLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 885 LEGTTRRFTKRDASTFLRNSETGIVDQVMVTLNAEGYKFCKIRVRSVRIPQIGDKFASRH 944
Query: 63 GQKGT 67
GQKGT
Sbjct: 945 GQKGT 949
>gi|324120618|dbj|BAJ78700.1| RNA polymerase II second largest subunit [Aposthonia japonica]
Length = 1150
Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats.
Identities = 60/65 (92%), Positives = 63/65 (96%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
LEG+TKRF+KRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 856 LEGSTKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRH 915
Query: 63 GQKGT 67
GQKGT
Sbjct: 916 GQKGT 920
>gi|324120600|dbj|BAJ78691.1| RNA polymerase II second largest subunit [Petrobiellus takunagae]
Length = 1151
Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats.
Identities = 60/65 (92%), Positives = 63/65 (96%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
LEGTTKR++KRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 856 LEGTTKRYTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRH 915
Query: 63 GQKGT 67
GQKGT
Sbjct: 916 GQKGT 920
>gi|324120604|dbj|BAJ78693.1| RNA polymerase II second largest subunit [Thermobia domestica]
Length = 1175
Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats.
Identities = 59/65 (90%), Positives = 63/65 (96%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
LEGTTKR++KRD STFLRNSETGIVDQVM+TLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 881 LEGTTKRYTKRDASTFLRNSETGIVDQVMITLNSEGYKFCKIRVRSVRIPQIGDKFASRH 940
Query: 63 GQKGT 67
GQKGT
Sbjct: 941 GQKGT 945
>gi|324120666|dbj|BAJ78724.1| RNA polymerase II second largest subunit [Chrysoperla nipponensis]
Length = 1175
Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats.
Identities = 59/65 (90%), Positives = 63/65 (96%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
LEGTTKR++KRD STFLRNSETG+VDQVMLTLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 881 LEGTTKRYTKRDASTFLRNSETGVVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRH 940
Query: 63 GQKGT 67
GQKGT
Sbjct: 941 GQKGT 945
>gi|324120606|dbj|BAJ78694.1| RNA polymerase II second largest subunit [Isolepisma japonica]
Length = 1176
Score = 129 bits (323), Expect = 3e-28, Method: Composition-based stats.
Identities = 59/65 (90%), Positives = 63/65 (96%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
LEGTTKR++KRD STFLRNSETGIVDQVM+TLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 881 LEGTTKRYTKRDASTFLRNSETGIVDQVMITLNSEGYKFCKIRVRSVRIPQIGDKFASRH 940
Query: 63 GQKGT 67
GQKGT
Sbjct: 941 GQKGT 945
>gi|91090964|ref|XP_974653.1| PREDICTED: similar to AGAP003648-PA [Tribolium castaneum]
gi|270013197|gb|EFA09645.1| hypothetical protein TcasGA2_TC011771 [Tribolium castaneum]
Length = 1175
Score = 129 bits (323), Expect = 3e-28, Method: Composition-based stats.
Identities = 59/65 (90%), Positives = 63/65 (96%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
L+GTTKRF+KRD STFLRNSETG+VDQVMLTLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 881 LDGTTKRFTKRDASTFLRNSETGVVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRH 940
Query: 63 GQKGT 67
GQKGT
Sbjct: 941 GQKGT 945
>gi|324120670|dbj|BAJ78726.1| RNA polymerase II second largest subunit [Eretes sticticus]
Length = 1174
Score = 129 bits (323), Expect = 3e-28, Method: Composition-based stats.
Identities = 59/65 (90%), Positives = 63/65 (96%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
L+GTTKR++KRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 880 LDGTTKRYTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRH 939
Query: 63 GQKGT 67
GQKGT
Sbjct: 940 GQKGT 944
>gi|324120672|dbj|BAJ78727.1| RNA polymerase II second largest subunit [Lucidina biplagiata]
Length = 1175
Score = 129 bits (323), Expect = 3e-28, Method: Composition-based stats.
Identities = 59/65 (90%), Positives = 63/65 (96%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
L+GTTK+FSKRD STFLRNSETG+VDQVMLTLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 881 LDGTTKKFSKRDASTFLRNSETGVVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRH 940
Query: 63 GQKGT 67
GQKGT
Sbjct: 941 GQKGT 945
>gi|324120598|dbj|BAJ78690.1| RNA polymerase II second largest subunit [Pedetontus unimaculatus]
Length = 1176
Score = 129 bits (323), Expect = 3e-28, Method: Composition-based stats.
Identities = 59/65 (90%), Positives = 63/65 (96%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
LEGTT+R++KRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 881 LEGTTRRYTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRH 940
Query: 63 GQKGT 67
GQKGT
Sbjct: 941 GQKGT 945
>gi|324120634|dbj|BAJ78708.1| RNA polymerase II second largest subunit [Forficula hiromasai]
Length = 1174
Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats.
Identities = 59/65 (90%), Positives = 63/65 (96%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
L+GTTKR++KRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 880 LDGTTKRYTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRH 939
Query: 63 GQKGT 67
GQKGT
Sbjct: 940 GQKGT 944
>gi|324120676|dbj|BAJ78729.1| RNA polymerase II second largest subunit [Stenopsyche marmorata]
Length = 1174
Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats.
Identities = 59/65 (90%), Positives = 63/65 (96%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
L+GTTKR++KRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 879 LDGTTKRYTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRH 938
Query: 63 GQKGT 67
GQKGT
Sbjct: 939 GQKGT 943
>gi|324120656|dbj|BAJ78719.1| RNA polymerase II second largest subunit [Metylophorus sp. E-43]
Length = 1176
Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats.
Identities = 59/65 (90%), Positives = 62/65 (95%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
LEGTT+RF+KRD STFLRNSETG VDQVMLTLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 882 LEGTTRRFTKRDASTFLRNSETGCVDQVMLTLNAEGYKFCKIRVRSVRIPQIGDKFASRH 941
Query: 63 GQKGT 67
GQKGT
Sbjct: 942 GQKGT 946
>gi|324120632|dbj|BAJ78707.1| RNA polymerase II second largest subunit [Euborellia plebeja]
Length = 1174
Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats.
Identities = 59/65 (90%), Positives = 63/65 (96%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
L+GTTKR++KRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 880 LDGTTKRYTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRH 939
Query: 63 GQKGT 67
GQKGT
Sbjct: 940 GQKGT 944
>gi|324120620|dbj|BAJ78701.1| RNA polymerase II second largest subunit [Galloisiana yuasai]
Length = 1175
Score = 128 bits (321), Expect = 5e-28, Method: Composition-based stats.
Identities = 59/65 (90%), Positives = 62/65 (95%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
LEG TKR++KRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 881 LEGATKRYTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRH 940
Query: 63 GQKGT 67
GQKGT
Sbjct: 941 GQKGT 945
>gi|324120678|dbj|BAJ78730.1| RNA polymerase II second largest subunit [Panorpa takenouchii]
Length = 1172
Score = 128 bits (321), Expect = 6e-28, Method: Composition-based stats.
Identities = 60/65 (92%), Positives = 62/65 (95%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
LEGTTKR +KRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 878 LEGTTKRHTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRH 937
Query: 63 GQKGT 67
GQKGT
Sbjct: 938 GQKGT 942
>gi|324120680|dbj|BAJ78731.1| RNA polymerase II second largest subunit [Ctenocephalides felis]
Length = 1175
Score = 127 bits (320), Expect = 6e-28, Method: Composition-based stats.
Identities = 60/65 (92%), Positives = 62/65 (95%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
LEGTTKR +KRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 881 LEGTTKRHTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRH 940
Query: 63 GQKGT 67
GQKGT
Sbjct: 941 GQKGT 945
>gi|324120674|dbj|BAJ78728.1| RNA polymerase II second largest subunit [Papilio polytes]
Length = 1176
Score = 127 bits (320), Expect = 7e-28, Method: Composition-based stats.
Identities = 58/65 (89%), Positives = 63/65 (96%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
LEGTT+R++KRD STFLRNSETGIVDQVM+TLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 881 LEGTTRRYTKRDASTFLRNSETGIVDQVMVTLNREGYKFCKIRVRSVRIPQIGDKFASRH 940
Query: 63 GQKGT 67
GQKGT
Sbjct: 941 GQKGT 945
>gi|328777078|ref|XP_003249277.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB2 [Apis mellifera]
Length = 1154
Score = 127 bits (319), Expect = 8e-28, Method: Composition-based stats.
Identities = 59/65 (90%), Positives = 62/65 (95%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
L+ TTKRF+KRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 860 LDSTTKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRH 919
Query: 63 GQKGT 67
GQKGT
Sbjct: 920 GQKGT 924
>gi|380024797|ref|XP_003696177.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB2-like [Apis florea]
Length = 1175
Score = 127 bits (319), Expect = 8e-28, Method: Composition-based stats.
Identities = 59/65 (90%), Positives = 62/65 (95%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
L+ TTKRF+KRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 881 LDSTTKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRH 940
Query: 63 GQKGT 67
GQKGT
Sbjct: 941 GQKGT 945
>gi|345495600|ref|XP_003427537.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB2 [Nasonia vitripennis]
Length = 1174
Score = 127 bits (319), Expect = 8e-28, Method: Composition-based stats.
Identities = 59/65 (90%), Positives = 62/65 (95%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
L+ TTKRF+KRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 880 LDSTTKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRH 939
Query: 63 GQKGT 67
GQKGT
Sbjct: 940 GQKGT 944
>gi|307182559|gb|EFN69752.1| DNA-directed RNA polymerase II subunit RPB2 [Camponotus floridanus]
Length = 1178
Score = 127 bits (319), Expect = 8e-28, Method: Composition-based stats.
Identities = 59/65 (90%), Positives = 62/65 (95%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
L+ TTKRF+KRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 884 LDSTTKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRH 943
Query: 63 GQKGT 67
GQKGT
Sbjct: 944 GQKGT 948
>gi|383851705|ref|XP_003701372.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
[Megachile rotundata]
Length = 1175
Score = 127 bits (319), Expect = 9e-28, Method: Composition-based stats.
Identities = 59/65 (90%), Positives = 62/65 (95%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
L+ TTKRF+KRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 881 LDSTTKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRH 940
Query: 63 GQKGT 67
GQKGT
Sbjct: 941 GQKGT 945
>gi|332022245|gb|EGI62560.1| DNA-directed RNA polymerase II subunit RPB2 [Acromyrmex echinatior]
Length = 1178
Score = 127 bits (319), Expect = 9e-28, Method: Composition-based stats.
Identities = 59/65 (90%), Positives = 62/65 (95%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
L+ TTKRF+KRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 884 LDSTTKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRH 943
Query: 63 GQKGT 67
GQKGT
Sbjct: 944 GQKGT 948
>gi|324120660|dbj|BAJ78721.1| RNA polymerase II second largest subunit [Vespa analis insularis]
Length = 1175
Score = 127 bits (319), Expect = 9e-28, Method: Composition-based stats.
Identities = 59/65 (90%), Positives = 62/65 (95%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
L+ TTKRF+KRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 881 LDSTTKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRH 940
Query: 63 GQKGT 67
GQKGT
Sbjct: 941 GQKGT 945
>gi|340726257|ref|XP_003401477.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Bombus
terrestris]
gi|350425904|ref|XP_003494269.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Bombus
impatiens]
Length = 1175
Score = 127 bits (319), Expect = 9e-28, Method: Composition-based stats.
Identities = 59/65 (90%), Positives = 62/65 (95%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
L+ TTKRF+KRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 881 LDSTTKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRH 940
Query: 63 GQKGT 67
GQKGT
Sbjct: 941 GQKGT 945
>gi|324120646|dbj|BAJ78714.1| RNA polymerase II second largest subunit [Gynaikothrips ficorum]
Length = 1150
Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats.
Identities = 59/65 (90%), Positives = 62/65 (95%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
LEGTT+R +KRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 856 LEGTTRRHTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRH 915
Query: 63 GQKGT 67
GQKGT
Sbjct: 916 GQKGT 920
>gi|307208700|gb|EFN85990.1| DNA-directed RNA polymerase II subunit RPB2 [Harpegnathos saltator]
Length = 1123
Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats.
Identities = 59/65 (90%), Positives = 62/65 (95%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
L+ TTKRF+KRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 829 LDSTTKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRH 888
Query: 63 GQKGT 67
GQKGT
Sbjct: 889 GQKGT 893
>gi|17136444|ref|NP_476706.1| RNA polymerase II 140kD subunit [Drosophila melanogaster]
gi|195329082|ref|XP_002031240.1| GM24152 [Drosophila sechellia]
gi|12644108|sp|P08266.2|RPB2_DROME RecName: Full=DNA-directed RNA polymerase II subunit RPB2;
Short=RNA polymerase II subunit 2; Short=RNA polymerase
II subunit B2; AltName: Full=DNA-directed RNA polymerase
II 140 kDa polypeptide
gi|7299847|gb|AAF55024.1| RNA polymerase II 140kD subunit [Drosophila melanogaster]
gi|27819971|gb|AAO25022.1| LD22387p [Drosophila melanogaster]
gi|194120183|gb|EDW42226.1| GM24152 [Drosophila sechellia]
Length = 1176
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 59/65 (90%), Positives = 61/65 (93%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
L+ TKRFSKRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 882 LDSNTKRFSKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRH 941
Query: 63 GQKGT 67
GQKGT
Sbjct: 942 GQKGT 946
>gi|195570991|ref|XP_002103487.1| GD18948 [Drosophila simulans]
gi|194199414|gb|EDX12990.1| GD18948 [Drosophila simulans]
Length = 1176
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 59/65 (90%), Positives = 61/65 (93%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
L+ TKRFSKRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 882 LDSNTKRFSKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRH 941
Query: 63 GQKGT 67
GQKGT
Sbjct: 942 GQKGT 946
>gi|195501705|ref|XP_002097907.1| GE24221 [Drosophila yakuba]
gi|194184008|gb|EDW97619.1| GE24221 [Drosophila yakuba]
Length = 1176
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 59/65 (90%), Positives = 61/65 (93%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
L+ TKRFSKRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 882 LDSNTKRFSKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRH 941
Query: 63 GQKGT 67
GQKGT
Sbjct: 942 GQKGT 946
>gi|194900689|ref|XP_001979888.1| GG16840 [Drosophila erecta]
gi|190651591|gb|EDV48846.1| GG16840 [Drosophila erecta]
Length = 1176
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 59/65 (90%), Positives = 61/65 (93%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
L+ TKRFSKRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 882 LDSNTKRFSKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRH 941
Query: 63 GQKGT 67
GQKGT
Sbjct: 942 GQKGT 946
>gi|391332506|ref|XP_003740675.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
[Metaseiulus occidentalis]
Length = 1178
Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats.
Identities = 58/65 (89%), Positives = 61/65 (93%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
L+ T KR+SKRD STFLRNSETGIVDQVMLT+N DGYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 879 LDSTNKRYSKRDASTFLRNSETGIVDQVMLTINSDGYKFCKIRVRSVRIPQIGDKFASRH 938
Query: 63 GQKGT 67
GQKGT
Sbjct: 939 GQKGT 943
>gi|5514652|emb|CAA29180.2| RNA polymerase [Drosophila melanogaster]
Length = 1123
Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats.
Identities = 59/65 (90%), Positives = 61/65 (93%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
L+ TKRFSKRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 829 LDSNTKRFSKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRH 888
Query: 63 GQKGT 67
GQKGT
Sbjct: 889 GQKGT 893
>gi|324120644|dbj|BAJ78713.1| RNA polymerase II second largest subunit [Thrips palmi]
Length = 1150
Score = 125 bits (315), Expect = 3e-27, Method: Composition-based stats.
Identities = 58/65 (89%), Positives = 62/65 (95%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
L+GTT+R +KRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 856 LDGTTRRHTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRH 915
Query: 63 GQKGT 67
GQKGT
Sbjct: 916 GQKGT 920
>gi|324120658|dbj|BAJ78720.1| RNA polymerase II second largest subunit [Neocolochelyna itoi]
Length = 1175
Score = 125 bits (315), Expect = 3e-27, Method: Composition-based stats.
Identities = 58/65 (89%), Positives = 61/65 (93%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
L+ TKRF+KRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 881 LDSATKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRH 940
Query: 63 GQKGT 67
GQKGT
Sbjct: 941 GQKGT 945
>gi|156538773|ref|XP_001607902.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Nasonia
vitripennis]
Length = 1175
Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats.
Identities = 58/65 (89%), Positives = 62/65 (95%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
L+ +TKRF+KRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 881 LDSSTKRFTKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRH 940
Query: 63 GQKGT 67
GQKGT
Sbjct: 941 GQKGT 945
>gi|195446199|ref|XP_002070673.1| GK12191 [Drosophila willistoni]
gi|194166758|gb|EDW81659.1| GK12191 [Drosophila willistoni]
Length = 1176
Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats.
Identities = 58/65 (89%), Positives = 61/65 (93%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
L+ TKRF+KRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 882 LDSNTKRFAKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRH 941
Query: 63 GQKGT 67
GQKGT
Sbjct: 942 GQKGT 946
>gi|195392246|ref|XP_002054770.1| RNA polymerase II 140kD subunit [Drosophila virilis]
gi|194152856|gb|EDW68290.1| RNA polymerase II 140kD subunit [Drosophila virilis]
Length = 1176
Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats.
Identities = 58/65 (89%), Positives = 61/65 (93%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
L+ TKRF+KRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 882 LDSNTKRFAKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRH 941
Query: 63 GQKGT 67
GQKGT
Sbjct: 942 GQKGT 946
>gi|195145272|ref|XP_002013620.1| GL24239 [Drosophila persimilis]
gi|198452242|ref|XP_001358686.2| GA16485 [Drosophila pseudoobscura pseudoobscura]
gi|194102563|gb|EDW24606.1| GL24239 [Drosophila persimilis]
gi|198131848|gb|EAL27829.2| GA16485 [Drosophila pseudoobscura pseudoobscura]
Length = 1176
Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats.
Identities = 58/65 (89%), Positives = 61/65 (93%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
L+ TKRF+KRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 882 LDSNTKRFAKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRH 941
Query: 63 GQKGT 67
GQKGT
Sbjct: 942 GQKGT 946
>gi|195109863|ref|XP_001999501.1| GI23040 [Drosophila mojavensis]
gi|193916095|gb|EDW14962.1| GI23040 [Drosophila mojavensis]
Length = 1176
Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats.
Identities = 58/65 (89%), Positives = 61/65 (93%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
L+ TKRF+KRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 882 LDSNTKRFAKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRH 941
Query: 63 GQKGT 67
GQKGT
Sbjct: 942 GQKGT 946
>gi|195064711|ref|XP_001996619.1| GH19704 [Drosophila grimshawi]
gi|193892751|gb|EDV91617.1| GH19704 [Drosophila grimshawi]
Length = 1175
Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats.
Identities = 58/65 (89%), Positives = 61/65 (93%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
L+ TKRF+KRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 881 LDSNTKRFAKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRH 940
Query: 63 GQKGT 67
GQKGT
Sbjct: 941 GQKGT 945
>gi|194745991|ref|XP_001955468.1| GF16238 [Drosophila ananassae]
gi|190628505|gb|EDV44029.1| GF16238 [Drosophila ananassae]
Length = 1176
Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats.
Identities = 58/65 (89%), Positives = 61/65 (93%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
L+ TKRF+KRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 882 LDSNTKRFAKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRH 941
Query: 63 GQKGT 67
GQKGT
Sbjct: 942 GQKGT 946
>gi|242009479|ref|XP_002425513.1| DNA-directed RNA polymerase II 135 kDa polypeptide, putative
[Pediculus humanus corporis]
gi|212509368|gb|EEB12775.1| DNA-directed RNA polymerase II 135 kDa polypeptide, putative
[Pediculus humanus corporis]
Length = 1175
Score = 125 bits (313), Expect = 4e-27, Method: Composition-based stats.
Identities = 57/65 (87%), Positives = 61/65 (93%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
LEG TKR++KRD STFLRNSETG VDQVM+TLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 881 LEGATKRYTKRDASTFLRNSETGCVDQVMITLNSEGYKFCKIRVRSVRIPQIGDKFASRH 940
Query: 63 GQKGT 67
GQKGT
Sbjct: 941 GQKGT 945
>gi|241813048|ref|XP_002416483.1| DNA-directed RNA polymerase II, putative [Ixodes scapularis]
gi|215510947|gb|EEC20400.1| DNA-directed RNA polymerase II, putative [Ixodes scapularis]
Length = 1142
Score = 125 bits (313), Expect = 4e-27, Method: Composition-based stats.
Identities = 57/65 (87%), Positives = 61/65 (93%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
LE T +RF+KRD STFLRNSETGIVDQVMLT+N +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 880 LESTNRRFTKRDASTFLRNSETGIVDQVMLTVNAEGYKFCKIRVRSVRIPQIGDKFASRH 939
Query: 63 GQKGT 67
GQKGT
Sbjct: 940 GQKGT 944
>gi|324120614|dbj|BAJ78698.1| RNA polymerase II second largest subunit [Isonychia japonica]
Length = 1150
Score = 125 bits (313), Expect = 5e-27, Method: Composition-based stats.
Identities = 58/65 (89%), Positives = 62/65 (95%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
LEGTTKR++KRD STFLRNSETGIVDQVM+TLN +GYKF KIRVRSVRIPQIGDKFASRH
Sbjct: 856 LEGTTKRYTKRDASTFLRNSETGIVDQVMITLNSEGYKFSKIRVRSVRIPQIGDKFASRH 915
Query: 63 GQKGT 67
GQKGT
Sbjct: 916 GQKGT 920
>gi|427798029|gb|JAA64466.1| Putative rna polymerase i second largest subunit, partial
[Rhipicephalus pulchellus]
Length = 1149
Score = 124 bits (312), Expect = 5e-27, Method: Composition-based stats.
Identities = 57/65 (87%), Positives = 61/65 (93%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
LE T +RF+KRD STFLRNSETGIVDQVMLT+N +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 881 LESTNRRFTKRDASTFLRNSETGIVDQVMLTVNAEGYKFCKIRVRSVRIPQIGDKFASRH 940
Query: 63 GQKGT 67
GQKGT
Sbjct: 941 GQKGT 945
>gi|321470077|gb|EFX81055.1| hypothetical protein DAPPUDRAFT_102782 [Daphnia pulex]
Length = 1174
Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats.
Identities = 58/65 (89%), Positives = 61/65 (93%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
LE TTK+FSKRD STFLR+SETGIVDQVMLTLN +G KFCKIRVRSVRIPQIGDKFASRH
Sbjct: 880 LESTTKKFSKRDASTFLRHSETGIVDQVMLTLNAEGNKFCKIRVRSVRIPQIGDKFASRH 939
Query: 63 GQKGT 67
GQKGT
Sbjct: 940 GQKGT 944
>gi|324120654|dbj|BAJ78718.1| RNA polymerase II second largest subunit [Uroleucon
nigrotuberculatum]
Length = 1177
Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats.
Identities = 56/65 (86%), Positives = 62/65 (95%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
LEGTTK++SKRD STFLRNSETG++DQV+LTLN +GYKFCKIRVRS RIPQIGDKFASRH
Sbjct: 882 LEGTTKKYSKRDCSTFLRNSETGLIDQVLLTLNSEGYKFCKIRVRSERIPQIGDKFASRH 941
Query: 63 GQKGT 67
GQKGT
Sbjct: 942 GQKGT 946
>gi|260826766|ref|XP_002608336.1| hypothetical protein BRAFLDRAFT_126222 [Branchiostoma floridae]
gi|229293687|gb|EEN64346.1| hypothetical protein BRAFLDRAFT_126222 [Branchiostoma floridae]
Length = 1104
Score = 122 bits (305), Expect = 3e-26, Method: Composition-based stats.
Identities = 55/65 (84%), Positives = 62/65 (95%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
LE TTKRF+KRD STFLR+SETGIVDQVM+++N +GYKFCK+RVRSVRIPQIGDKFASRH
Sbjct: 904 LESTTKRFTKRDSSTFLRSSETGIVDQVMVSINQEGYKFCKVRVRSVRIPQIGDKFASRH 963
Query: 63 GQKGT 67
GQKGT
Sbjct: 964 GQKGT 968
>gi|440903358|gb|ELR54029.1| DNA-directed RNA polymerase II subunit RPB2 [Bos grunniens mutus]
Length = 1175
Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats.
Identities = 56/65 (86%), Positives = 61/65 (93%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
LEGT +R++KRD STFLR SETGIVDQVM+TLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 881 LEGTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRH 940
Query: 63 GQKGT 67
GQKGT
Sbjct: 941 GQKGT 945
>gi|154707850|ref|NP_001092552.1| DNA-directed RNA polymerase II subunit RPB2 [Bos taurus]
gi|73975053|ref|XP_532382.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 2
[Canis lupus familiaris]
gi|301765482|ref|XP_002918158.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
[Ailuropoda melanoleuca]
gi|410957577|ref|XP_003985402.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 1
[Felis catus]
gi|426231739|ref|XP_004009895.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Ovis aries]
gi|148744083|gb|AAI42268.1| POLR2B protein [Bos taurus]
gi|296486557|tpg|DAA28670.1| TPA: DNA directed RNA polymerase II polypeptide B [Bos taurus]
Length = 1174
Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats.
Identities = 56/65 (86%), Positives = 61/65 (93%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
LEGT +R++KRD STFLR SETGIVDQVM+TLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 880 LEGTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRH 939
Query: 63 GQKGT 67
GQKGT
Sbjct: 940 GQKGT 944
>gi|335293559|ref|XP_003129085.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Sus scrofa]
Length = 1167
Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats.
Identities = 56/65 (86%), Positives = 61/65 (93%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
LEGT +R++KRD STFLR SETGIVDQVM+TLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 873 LEGTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRH 932
Query: 63 GQKGT 67
GQKGT
Sbjct: 933 GQKGT 937
>gi|281352499|gb|EFB28083.1| hypothetical protein PANDA_006563 [Ailuropoda melanoleuca]
Length = 1168
Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats.
Identities = 56/65 (86%), Positives = 61/65 (93%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
LEGT +R++KRD STFLR SETGIVDQVM+TLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 874 LEGTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRH 933
Query: 63 GQKGT 67
GQKGT
Sbjct: 934 GQKGT 938
>gi|324120668|dbj|BAJ78725.1| RNA polymerase II second largest subunit [Stichotrema asahinai]
Length = 1173
Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats.
Identities = 55/65 (84%), Positives = 60/65 (92%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
LE TK+++KRD STFLR SETG+VDQVMLTLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 880 LESVTKKYTKRDASTFLRRSETGVVDQVMLTLNAEGYKFCKIRVRSVRIPQIGDKFASRH 939
Query: 63 GQKGT 67
GQKGT
Sbjct: 940 GQKGT 944
>gi|340382420|ref|XP_003389717.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Amphimedon
queenslandica]
Length = 1175
Score = 121 bits (303), Expect = 6e-26, Method: Composition-based stats.
Identities = 55/65 (84%), Positives = 59/65 (90%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
LEG KR+ KRD STFLR SETGI+DQVML+LN DGYKFCKIRVRSVR+PQIGDKFASRH
Sbjct: 879 LEGAPKRYQKRDASTFLRASETGIIDQVMLSLNQDGYKFCKIRVRSVRVPQIGDKFASRH 938
Query: 63 GQKGT 67
GQKGT
Sbjct: 939 GQKGT 943
>gi|355712719|gb|AES04443.1| polymerase II polypeptide B, 140kDa [Mustela putorius furo]
Length = 1104
Score = 121 bits (303), Expect = 6e-26, Method: Composition-based stats.
Identities = 56/65 (86%), Positives = 61/65 (93%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
LEGT +R++KRD STFLR SETGIVDQVM+TLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 832 LEGTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRH 891
Query: 63 GQKGT 67
GQKGT
Sbjct: 892 GQKGT 896
>gi|73975081|ref|XP_861044.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 17
[Canis lupus familiaris]
gi|410957579|ref|XP_003985403.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 2
[Felis catus]
Length = 1099
Score = 121 bits (303), Expect = 6e-26, Method: Composition-based stats.
Identities = 56/65 (86%), Positives = 61/65 (93%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
LEGT +R++KRD STFLR SETGIVDQVM+TLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 805 LEGTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRH 864
Query: 63 GQKGT 67
GQKGT
Sbjct: 865 GQKGT 869
>gi|324120612|dbj|BAJ78697.1| RNA polymerase II second largest subunit [Ephemera japonica]
Length = 1179
Score = 121 bits (303), Expect = 6e-26, Method: Composition-based stats.
Identities = 56/65 (86%), Positives = 61/65 (93%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
LEG+TK++ KRD STFLRNSETGIVDQVM+TLN +GYKF KIRVRSVRIPQIGDKFASRH
Sbjct: 885 LEGSTKKYVKRDASTFLRNSETGIVDQVMITLNSEGYKFSKIRVRSVRIPQIGDKFASRH 944
Query: 63 GQKGT 67
GQKGT
Sbjct: 945 GQKGT 949
>gi|224049409|ref|XP_002192218.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Taeniopygia
guttata]
Length = 1174
Score = 120 bits (302), Expect = 8e-26, Method: Composition-based stats.
Identities = 56/65 (86%), Positives = 60/65 (92%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
LE T +RF+KRD STFLR SETGIVDQVM+TLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 880 LESTNRRFTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRH 939
Query: 63 GQKGT 67
GQKGT
Sbjct: 940 GQKGT 944
>gi|449270676|gb|EMC81333.1| DNA-directed RNA polymerase II subunit RPB2, partial [Columba
livia]
Length = 1168
Score = 120 bits (302), Expect = 8e-26, Method: Composition-based stats.
Identities = 56/65 (86%), Positives = 60/65 (92%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
LE T +RF+KRD STFLR SETGIVDQVM+TLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 874 LESTNRRFTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRH 933
Query: 63 GQKGT 67
GQKGT
Sbjct: 934 GQKGT 938
>gi|57530101|ref|NP_001006448.1| DNA-directed RNA polymerase II subunit RPB2 [Gallus gallus]
gi|53127025|emb|CAG31004.1| hypothetical protein RCJMB04_1i14 [Gallus gallus]
Length = 1174
Score = 120 bits (302), Expect = 8e-26, Method: Composition-based stats.
Identities = 56/65 (86%), Positives = 60/65 (92%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
LE T +RF+KRD STFLR SETGIVDQVM+TLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 880 LESTNRRFTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRH 939
Query: 63 GQKGT 67
GQKGT
Sbjct: 940 GQKGT 944
>gi|291241363|ref|XP_002740582.1| PREDICTED: DNA directed RNA polymerase II polypeptide B-like
[Saccoglossus kowalevskii]
Length = 1175
Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats.
Identities = 52/65 (80%), Positives = 62/65 (95%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
LEGTT+RF+KRD STF+R +ETGIVDQVM+++N +GYKFCKI++RSVRIPQIGDKFASRH
Sbjct: 880 LEGTTRRFTKRDSSTFMRRTETGIVDQVMVSINQEGYKFCKIKIRSVRIPQIGDKFASRH 939
Query: 63 GQKGT 67
GQKGT
Sbjct: 940 GQKGT 944
>gi|387018202|gb|AFJ51219.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Crotalus
adamanteus]
Length = 1167
Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats.
Identities = 55/65 (84%), Positives = 60/65 (92%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
LE T +R++KRD STFLR SETGIVDQVM+TLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 873 LESTNRRYTKRDCSTFLRTSETGIVDQVMITLNQEGYKFCKIRVRSVRIPQIGDKFASRH 932
Query: 63 GQKGT 67
GQKGT
Sbjct: 933 GQKGT 937
>gi|397469837|ref|XP_003806546.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Pan
paniscus]
Length = 1226
Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats.
Identities = 55/65 (84%), Positives = 60/65 (92%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
LE T +R++KRD STFLR SETGIVDQVM+TLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 932 LESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRH 991
Query: 63 GQKGT 67
GQKGT
Sbjct: 992 GQKGT 996
>gi|431893877|gb|ELK03694.1| DNA-directed RNA polymerase II subunit RPB2 [Pteropus alecto]
Length = 1167
Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats.
Identities = 55/65 (84%), Positives = 60/65 (92%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
LE T +R++KRD STFLR SETGIVDQVM+TLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 873 LESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRH 932
Query: 63 GQKGT 67
GQKGT
Sbjct: 933 GQKGT 937
>gi|226958589|ref|NP_722493.2| DNA-directed RNA polymerase II subunit RPB2 [Mus musculus]
gi|51702009|sp|Q8CFI7.2|RPB2_MOUSE RecName: Full=DNA-directed RNA polymerase II subunit RPB2; AltName:
Full=DNA-directed RNA polymerase II 140 kDa polypeptide;
AltName: Full=DNA-directed RNA polymerase II subunit B;
AltName: Full=RNA polymerase II subunit 2; AltName:
Full=RNA polymerase II subunit B2
gi|148705989|gb|EDL37936.1| polymerase (RNA) II (DNA directed) polypeptide B [Mus musculus]
Length = 1174
Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats.
Identities = 55/65 (84%), Positives = 60/65 (92%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
LE T +R++KRD STFLR SETGIVDQVM+TLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 880 LESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRH 939
Query: 63 GQKGT 67
GQKGT
Sbjct: 940 GQKGT 944
>gi|291401757|ref|XP_002717206.1| PREDICTED: DNA directed RNA polymerase II polypeptide B
[Oryctolagus cuniculus]
Length = 1174
Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats.
Identities = 55/65 (84%), Positives = 60/65 (92%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
LE T +R++KRD STFLR SETGIVDQVM+TLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 880 LESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRH 939
Query: 63 GQKGT 67
GQKGT
Sbjct: 940 GQKGT 944
>gi|194209129|ref|XP_001916826.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB2-like [Equus caballus]
Length = 1174
Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats.
Identities = 55/65 (84%), Positives = 60/65 (92%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
LE T +R++KRD STFLR SETGIVDQVM+TLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 880 LESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRH 939
Query: 63 GQKGT 67
GQKGT
Sbjct: 940 GQKGT 944
>gi|4505941|ref|NP_000929.1| DNA-directed RNA polymerase II subunit RPB2 [Homo sapiens]
gi|157822127|ref|NP_001099472.1| DNA-directed RNA polymerase II subunit RPB2 [Rattus norvegicus]
gi|387849108|ref|NP_001248426.1| DNA-directed RNA polymerase II subunit RPB2 [Macaca mulatta]
gi|114594586|ref|XP_517275.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 2
[Pan troglodytes]
gi|296196473|ref|XP_002745851.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Callithrix
jacchus]
gi|297673513|ref|XP_002814803.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 4
[Pongo abelii]
gi|332238537|ref|XP_003268457.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Nomascus
leucogenys]
gi|348571889|ref|XP_003471727.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Cavia
porcellus]
gi|354498860|ref|XP_003511530.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
[Cricetulus griseus]
gi|395851369|ref|XP_003798233.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 1
[Otolemur garnettii]
gi|402869719|ref|XP_003898895.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 1
[Papio anubis]
gi|401012|sp|P30876.1|RPB2_HUMAN RecName: Full=DNA-directed RNA polymerase II subunit RPB2; AltName:
Full=DNA-directed RNA polymerase II 140 kDa polypeptide;
AltName: Full=DNA-directed RNA polymerase II subunit B;
AltName: Full=RNA polymerase II subunit 2; AltName:
Full=RNA polymerase II subunit B2
gi|36122|emb|CAA45124.1| RNA polymerase II 140 kDa subunit [Homo sapiens]
gi|254869|gb|AAB23139.1| RNA polymerase II second largest subunit, RNA polymerase B second
largest subunit [human, HeLa cells, Peptide, 1174 aa]
gi|33870592|gb|AAH23503.2| Polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Homo
sapiens]
gi|119625924|gb|EAX05519.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Homo
sapiens]
gi|149035168|gb|EDL89872.1| polymerase (RNA) II (DNA directed) polypeptide B (predicted)
[Rattus norvegicus]
gi|158260669|dbj|BAF82512.1| unnamed protein product [Homo sapiens]
gi|168277428|dbj|BAG10692.1| DNA-directed RNA polymerase II subunit RPB2 [synthetic construct]
gi|355749385|gb|EHH53784.1| DNA-directed RNA polymerase II subunit RPB2 [Macaca fascicularis]
gi|380783295|gb|AFE63523.1| DNA-directed RNA polymerase II subunit RPB2 [Macaca mulatta]
gi|383413177|gb|AFH29802.1| DNA-directed RNA polymerase II subunit RPB2 [Macaca mulatta]
gi|384941246|gb|AFI34228.1| DNA-directed RNA polymerase II subunit RPB2 [Macaca mulatta]
gi|410224966|gb|JAA09702.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Pan
troglodytes]
gi|410261216|gb|JAA18574.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Pan
troglodytes]
gi|410306896|gb|JAA32048.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Pan
troglodytes]
gi|410306898|gb|JAA32049.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Pan
troglodytes]
gi|410306900|gb|JAA32050.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Pan
troglodytes]
gi|410350135|gb|JAA41671.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Pan
troglodytes]
Length = 1174
Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats.
Identities = 55/65 (84%), Positives = 60/65 (92%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
LE T +R++KRD STFLR SETGIVDQVM+TLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 880 LESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRH 939
Query: 63 GQKGT 67
GQKGT
Sbjct: 940 GQKGT 944
>gi|23512288|gb|AAH38472.1| Polymerase (RNA) II (DNA directed) polypeptide B [Mus musculus]
Length = 1167
Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats.
Identities = 55/65 (84%), Positives = 60/65 (92%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
LE T +R++KRD STFLR SETGIVDQVM+TLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 873 LESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRH 932
Query: 63 GQKGT 67
GQKGT
Sbjct: 933 GQKGT 937
>gi|297673503|ref|XP_002814800.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 1
[Pongo abelii]
gi|410038417|ref|XP_003950400.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Pan
troglodytes]
Length = 1167
Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats.
Identities = 55/65 (84%), Positives = 60/65 (92%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
LE T +R++KRD STFLR SETGIVDQVM+TLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 873 LESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRH 932
Query: 63 GQKGT 67
GQKGT
Sbjct: 933 GQKGT 937
>gi|126331583|ref|XP_001362455.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Monodelphis
domestica]
gi|395542735|ref|XP_003773281.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Sarcophilus
harrisii]
Length = 1174
Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats.
Identities = 55/65 (84%), Positives = 60/65 (92%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
LE T +R++KRD STFLR SETGIVDQVM+TLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 880 LESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRH 939
Query: 63 GQKGT 67
GQKGT
Sbjct: 940 GQKGT 944
>gi|355687402|gb|EHH25986.1| DNA-directed RNA polymerase II subunit RPB2 [Macaca mulatta]
Length = 1174
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 55/65 (84%), Positives = 60/65 (92%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
LE T +R++KRD STFLR SETGIVDQVM+TLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 880 LESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRH 939
Query: 63 GQKGT 67
GQKGT
Sbjct: 940 GQKGT 944
>gi|426344421|ref|XP_004038768.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Gorilla
gorilla gorilla]
Length = 1097
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 55/65 (84%), Positives = 60/65 (92%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
LE T +R++KRD STFLR SETGIVDQVM+TLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 803 LESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRH 862
Query: 63 GQKGT 67
GQKGT
Sbjct: 863 GQKGT 867
>gi|194379208|dbj|BAG58155.1| unnamed protein product [Homo sapiens]
Length = 1167
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 55/65 (84%), Positives = 60/65 (92%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
LE T +R++KRD STFLR SETGIVDQVM+TLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 873 LESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRH 932
Query: 63 GQKGT 67
GQKGT
Sbjct: 933 GQKGT 937
>gi|344288485|ref|XP_003415980.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
[Loxodonta africana]
Length = 1010
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 55/65 (84%), Positives = 60/65 (92%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
LE T +R++KRD STFLR SETGIVDQVM+TLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 716 LESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRH 775
Query: 63 GQKGT 67
GQKGT
Sbjct: 776 GQKGT 780
>gi|432961296|ref|XP_004086596.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB2-like [Oryzias latipes]
Length = 1120
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 55/65 (84%), Positives = 60/65 (92%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
L+ T KR++KRD STFLR SETGIVDQVM+TLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 826 LDSTNKRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRH 885
Query: 63 GQKGT 67
GQKGT
Sbjct: 886 GQKGT 890
>gi|417413545|gb|JAA53095.1| Putative rna polymerase i second largest subunit, partial [Desmodus
rotundus]
Length = 1144
Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats.
Identities = 55/65 (84%), Positives = 60/65 (92%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
LE T +R++KRD STFLR SETGIVDQVM+TLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 850 LESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRH 909
Query: 63 GQKGT 67
GQKGT
Sbjct: 910 GQKGT 914
>gi|520505|gb|AAC83398.1| RNA polymerase II, second largest subunit, partial [Artemia salina]
Length = 862
Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats.
Identities = 55/65 (84%), Positives = 58/65 (89%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
L KR+SKRD STFLRNSETGI DQVMLTLN +G+KFCKIRVRSVRIPQIGDKFASRH
Sbjct: 690 LSSAAKRYSKRDCSTFLRNSETGITDQVMLTLNTEGFKFCKIRVRSVRIPQIGDKFASRH 749
Query: 63 GQKGT 67
GQKGT
Sbjct: 750 GQKGT 754
>gi|194378878|dbj|BAG57990.1| unnamed protein product [Homo sapiens]
Length = 1099
Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats.
Identities = 55/65 (84%), Positives = 60/65 (92%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
LE T +R++KRD STFLR SETGIVDQVM+TLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 805 LESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRH 864
Query: 63 GQKGT 67
GQKGT
Sbjct: 865 GQKGT 869
>gi|297673507|ref|XP_002814802.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 3
[Pongo abelii]
gi|395851371|ref|XP_003798234.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 2
[Otolemur garnettii]
gi|410038419|ref|XP_003950401.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Pan
troglodytes]
Length = 1099
Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats.
Identities = 55/65 (84%), Positives = 60/65 (92%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
LE T +R++KRD STFLR SETGIVDQVM+TLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 805 LESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRH 864
Query: 63 GQKGT 67
GQKGT
Sbjct: 865 GQKGT 869
>gi|8489819|gb|AAF75766.1|AF265351_1 DNA-directed RNA polymerase II polypeptide B [Sus scrofa]
Length = 381
Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 56/66 (84%), Positives = 61/66 (92%)
Query: 2 HLEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASR 61
LEGT +R++KRD STFLR SETGIVDQVM+TLN +GYKFCKIRVRSVRIPQIGDKFASR
Sbjct: 86 ELEGTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASR 145
Query: 62 HGQKGT 67
HGQKGT
Sbjct: 146 HGQKGT 151
>gi|198418494|ref|XP_002128916.1| PREDICTED: similar to POLR2B protein [Ciona intestinalis]
Length = 1173
Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats.
Identities = 55/65 (84%), Positives = 60/65 (92%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
LEGTT+RF KRD STFLR SETGIVDQVM+++N DGYKF KIRVRSVR+PQIGDKFASRH
Sbjct: 879 LEGTTQRFKKRDVSTFLRTSETGIVDQVMISINQDGYKFTKIRVRSVRVPQIGDKFASRH 938
Query: 63 GQKGT 67
GQKGT
Sbjct: 939 GQKGT 943
>gi|327279896|ref|XP_003224691.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Anolis
carolinensis]
Length = 1174
Score = 118 bits (295), Expect = 5e-25, Method: Composition-based stats.
Identities = 54/65 (83%), Positives = 60/65 (92%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
LE T +R++KRD STFLR SETGIVDQVM+TLN +GYKFCKI+VRSVRIPQIGDKFASRH
Sbjct: 880 LESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIKVRSVRIPQIGDKFASRH 939
Query: 63 GQKGT 67
GQKGT
Sbjct: 940 GQKGT 944
>gi|403284743|ref|XP_003933716.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB2, partial [Saimiri boliviensis boliviensis]
Length = 992
Score = 118 bits (295), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 55/66 (83%), Positives = 60/66 (90%)
Query: 2 HLEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASR 61
LE T +R++KRD STFLR SETGIVDQVM+TLN +GYKFCKIRVRSVRIPQIGDKFASR
Sbjct: 697 ELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASR 756
Query: 62 HGQKGT 67
HGQKGT
Sbjct: 757 HGQKGT 762
>gi|348542471|ref|XP_003458708.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Oreochromis
niloticus]
Length = 1174
Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats.
Identities = 54/65 (83%), Positives = 60/65 (92%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
L+ T +R++KRD STFLR SETGIVDQVM+TLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 880 LDSTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRH 939
Query: 63 GQKGT 67
GQKGT
Sbjct: 940 GQKGT 944
>gi|291190610|ref|NP_001167150.1| DNA-directed RNA polymerase II subunit RPB2 [Salmo salar]
gi|223648370|gb|ACN10943.1| DNA-directed RNA polymerase II subunit RPB2 [Salmo salar]
Length = 1174
Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats.
Identities = 54/65 (83%), Positives = 60/65 (92%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
L+ T +R++KRD STFLR SETGIVDQVM+TLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 880 LDSTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRH 939
Query: 63 GQKGT 67
GQKGT
Sbjct: 940 GQKGT 944
>gi|410932093|ref|XP_003979428.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like,
partial [Takifugu rubripes]
Length = 982
Score = 117 bits (294), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 55/66 (83%), Positives = 60/66 (90%)
Query: 2 HLEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASR 61
LE T +R++KRD STFLR SETGIVDQVM+TLN +GYKFCKIRVRSVRIPQIGDKFASR
Sbjct: 687 ELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASR 746
Query: 62 HGQKGT 67
HGQKGT
Sbjct: 747 HGQKGT 752
>gi|302488402|ref|NP_001019632.2| DNA-directed RNA polymerase II subunit RPB2 [Danio rerio]
Length = 1174
Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats.
Identities = 54/65 (83%), Positives = 60/65 (92%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
L+ T +R++KRD STFLR SETGIVDQVM+TLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 880 LDSTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRH 939
Query: 63 GQKGT 67
GQKGT
Sbjct: 940 GQKGT 944
>gi|194386684|dbj|BAG61152.1| unnamed protein product [Homo sapiens]
Length = 1083
Score = 117 bits (294), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 55/66 (83%), Positives = 60/66 (90%)
Query: 2 HLEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASR 61
LE T +R++KRD STFLR SETGIVDQVM+TLN +GYKFCKIRVRSVRIPQIGDKFASR
Sbjct: 788 ELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASR 847
Query: 62 HGQKGT 67
HGQKGT
Sbjct: 848 HGQKGT 853
>gi|402869721|ref|XP_003898896.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 2
[Papio anubis]
Length = 1083
Score = 117 bits (294), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 55/66 (83%), Positives = 60/66 (90%)
Query: 2 HLEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASR 61
LE T +R++KRD STFLR SETGIVDQVM+TLN +GYKFCKIRVRSVRIPQIGDKFASR
Sbjct: 788 ELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASR 847
Query: 62 HGQKGT 67
HGQKGT
Sbjct: 848 HGQKGT 853
>gi|520511|gb|AAA50226.1| RNA polymerase II, second largest subunit, partial [Crassostrea
gigas]
Length = 859
Score = 117 bits (294), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 53/66 (80%), Positives = 60/66 (90%)
Query: 2 HLEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASR 61
LEGTTKRF+KRD S F+R SETGI+DQVM+TLN +GYKFCKIRVR+V+ PQIGDKFASR
Sbjct: 686 ELEGTTKRFTKRDASVFMRRSETGIIDQVMITLNQEGYKFCKIRVRTVKTPQIGDKFASR 745
Query: 62 HGQKGT 67
HGQKGT
Sbjct: 746 HGQKGT 751
>gi|344247350|gb|EGW03454.1| DNA-directed RNA polymerase II subunit RPB2 [Cricetulus griseus]
Length = 807
Score = 117 bits (294), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 55/65 (84%), Positives = 60/65 (92%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
LE T +R++KRD STFLR SETGIVDQVM+TLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 513 LESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRH 572
Query: 63 GQKGT 67
GQKGT
Sbjct: 573 GQKGT 577
>gi|90079569|dbj|BAE89464.1| unnamed protein product [Macaca fascicularis]
Length = 501
Score = 117 bits (293), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 55/65 (84%), Positives = 60/65 (92%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
LE T +R++KRD STFLR SETGIVDQVM+TLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 207 LESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRH 266
Query: 63 GQKGT 67
GQKGT
Sbjct: 267 GQKGT 271
>gi|3005758|gb|AAC09367.1| RNA polymerase II 140 kDa subunit [Homo sapiens]
Length = 476
Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/65 (84%), Positives = 60/65 (92%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
LE T +R++KRD STFLR SETGIVDQVM+TLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 182 LESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRH 241
Query: 63 GQKGT 67
GQKGT
Sbjct: 242 GQKGT 246
>gi|324500827|gb|ADY40377.1| DNA-directed RNA polymerase II subunit RPB2 [Ascaris suum]
Length = 1173
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 54/65 (83%), Positives = 59/65 (90%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
LE TK+++KRD STFLR+SETGIVDQVMLTLN DG KF KIRVRSVR+PQIGDKFASRH
Sbjct: 879 LEANTKKYTKRDASTFLRSSETGIVDQVMLTLNTDGNKFVKIRVRSVRLPQIGDKFASRH 938
Query: 63 GQKGT 67
GQKGT
Sbjct: 939 GQKGT 943
>gi|390337473|ref|XP_003724570.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB2-like [Strongylocentrotus purpuratus]
Length = 1142
Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 51/65 (78%), Positives = 62/65 (95%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
LEGT++RF+KRD STF+R++ETGI+DQVM+++N DGYKFCKI+VRSVR PQIGDKFASRH
Sbjct: 846 LEGTSRRFTKRDCSTFMRSTETGIIDQVMVSINQDGYKFCKIKVRSVRTPQIGDKFASRH 905
Query: 63 GQKGT 67
GQKGT
Sbjct: 906 GQKGT 910
>gi|312079478|ref|XP_003142191.1| DNA-directed RNA polymerase II second largest subunit [Loa loa]
gi|307762647|gb|EFO21881.1| DNA-directed RNA polymerase II subunit RPB2 [Loa loa]
Length = 1171
Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats.
Identities = 53/65 (81%), Positives = 59/65 (90%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
L+ T KR++K+D STFLR+SETGIVDQVMLTLN DG KF KIRVRSVR+PQIGDKFASRH
Sbjct: 877 LDATIKRYTKKDASTFLRSSETGIVDQVMLTLNTDGNKFVKIRVRSVRLPQIGDKFASRH 936
Query: 63 GQKGT 67
GQKGT
Sbjct: 937 GQKGT 941
>gi|170591608|ref|XP_001900562.1| DNA-directed RNA polymerase II second largest subunit [Brugia
malayi]
gi|158592174|gb|EDP30776.1| DNA-directed RNA polymerase II second largest subunit, putative
[Brugia malayi]
Length = 1185
Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats.
Identities = 52/65 (80%), Positives = 58/65 (89%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
L+ KR++K+D STFLR+SETGIVDQVMLTLN DG KF KIRVRSVR+PQIGDKFASRH
Sbjct: 891 LDAAIKRYTKKDASTFLRSSETGIVDQVMLTLNTDGNKFVKIRVRSVRLPQIGDKFASRH 950
Query: 63 GQKGT 67
GQKGT
Sbjct: 951 GQKGT 955
>gi|449676040|ref|XP_002163509.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Hydra
magnipapillata]
Length = 1184
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 52/64 (81%), Positives = 56/64 (87%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+ K F KRD STFLR SETGIVDQVMLT+N +GYKFCKI+VRSVRIPQIGDKFASRHG
Sbjct: 886 DSQAKHFKKRDASTFLRASETGIVDQVMLTINEEGYKFCKIKVRSVRIPQIGDKFASRHG 945
Query: 64 QKGT 67
QKGT
Sbjct: 946 QKGT 949
>gi|402591318|gb|EJW85248.1| DNA-directed RNA polymerase [Wuchereria bancrofti]
Length = 641
Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats.
Identities = 52/65 (80%), Positives = 58/65 (89%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
L+ KR++K+D STFLR+SETGIVDQVMLTLN DG KF KIRVRSVR+PQIGDKFASRH
Sbjct: 347 LDAAIKRYTKKDASTFLRSSETGIVDQVMLTLNTDGNKFVKIRVRSVRLPQIGDKFASRH 406
Query: 63 GQKGT 67
GQKGT
Sbjct: 407 GQKGT 411
>gi|156372267|ref|XP_001628960.1| predicted protein [Nematostella vectensis]
gi|156215949|gb|EDO36897.1| predicted protein [Nematostella vectensis]
Length = 1182
Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats.
Identities = 50/65 (76%), Positives = 60/65 (92%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
LEGT +++SK+D STFLR SETGIVDQVM+T+N +G+KF KI+VRSVR+PQIGDKFASRH
Sbjct: 884 LEGTARKYSKKDASTFLRPSETGIVDQVMVTINQEGFKFTKIKVRSVRVPQIGDKFASRH 943
Query: 63 GQKGT 67
GQKGT
Sbjct: 944 GQKGT 948
>gi|443726751|gb|ELU13810.1| hypothetical protein CAPTEDRAFT_172112 [Capitella teleta]
Length = 1174
Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats.
Identities = 48/65 (73%), Positives = 57/65 (87%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
L+ KRF+KRD S F+R SETGI+DQVM+T+N +GYKFCKIRVR+V+ PQIGDKFASRH
Sbjct: 880 LDAQAKRFTKRDCSVFMRRSETGIIDQVMVTINQEGYKFCKIRVRTVKTPQIGDKFASRH 939
Query: 63 GQKGT 67
GQKGT
Sbjct: 940 GQKGT 944
>gi|268574492|ref|XP_002642223.1| C. briggsae CBR-RPB-2 protein [Caenorhabditis briggsae]
Length = 1194
Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats.
Identities = 51/65 (78%), Positives = 58/65 (89%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
L+ T K++ KRD STFLR+SETGIVDQVML+LN DG KF KIR+RSVR+PQIGDKFASRH
Sbjct: 886 LDATGKKYPKRDASTFLRSSETGIVDQVMLSLNNDGNKFVKIRMRSVRLPQIGDKFASRH 945
Query: 63 GQKGT 67
GQKGT
Sbjct: 946 GQKGT 950
>gi|341896020|gb|EGT51955.1| CBN-RPB-2 protein [Caenorhabditis brenneri]
Length = 1195
Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats.
Identities = 51/65 (78%), Positives = 58/65 (89%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
L+ T K++ KRD STFLR+SETGIVDQVML+LN DG KF KIR+RSVR+PQIGDKFASRH
Sbjct: 884 LDATGKKYPKRDASTFLRSSETGIVDQVMLSLNNDGNKFVKIRMRSVRLPQIGDKFASRH 943
Query: 63 GQKGT 67
GQKGT
Sbjct: 944 GQKGT 948
>gi|308487676|ref|XP_003106033.1| CRE-RPB-2 protein [Caenorhabditis remanei]
gi|308254607|gb|EFO98559.1| CRE-RPB-2 protein [Caenorhabditis remanei]
Length = 1207
Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats.
Identities = 51/65 (78%), Positives = 58/65 (89%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
L+ T K++ KRD STFLR+SETGIVDQVML+LN DG KF KIR+RSVR+PQIGDKFASRH
Sbjct: 900 LDATGKKYPKRDASTFLRSSETGIVDQVMLSLNNDGNKFVKIRMRSVRLPQIGDKFASRH 959
Query: 63 GQKGT 67
GQKGT
Sbjct: 960 GQKGT 964
>gi|17552304|ref|NP_498047.1| Protein RPB-2 [Caenorhabditis elegans]
gi|2507348|sp|Q10578.2|RPB2_CAEEL RecName: Full=DNA-directed RNA polymerase II subunit RPB2;
Short=RNA polymerase II subunit 2; Short=RNA polymerase
II subunit B2
gi|351058294|emb|CCD65728.1| Protein RPB-2 [Caenorhabditis elegans]
Length = 1193
Score = 108 bits (270), Expect = 4e-22, Method: Composition-based stats.
Identities = 50/65 (76%), Positives = 58/65 (89%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
L+ + K++ KRD STFLR+SETGIVDQVML+LN DG KF KIR+RSVR+PQIGDKFASRH
Sbjct: 886 LDASGKKYPKRDASTFLRSSETGIVDQVMLSLNSDGNKFVKIRMRSVRLPQIGDKFASRH 945
Query: 63 GQKGT 67
GQKGT
Sbjct: 946 GQKGT 950
>gi|520507|gb|AAA50224.1| RNA polymerase II, second largest subunit, partial [Caenorhabditis
elegans]
Length = 859
Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats.
Identities = 50/65 (76%), Positives = 58/65 (89%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
L+ + K++ KRD STFLR+SETGIVDQVML+LN DG KF KIR+RSVR+PQIGDKFASRH
Sbjct: 687 LDASGKKYPKRDASTFLRSSETGIVDQVMLSLNSDGNKFVKIRMRSVRLPQIGDKFASRH 746
Query: 63 GQKGT 67
GQKGT
Sbjct: 747 GQKGT 751
>gi|339250694|ref|XP_003374332.1| DNA-directed RNA polymerase II subunit RPB2 [Trichinella spiralis]
gi|316969378|gb|EFV53485.1| DNA-directed RNA polymerase II subunit RPB2 [Trichinella spiralis]
Length = 1190
Score = 107 bits (268), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 51/62 (82%), Positives = 56/62 (90%)
Query: 6 TTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQK 65
TTKR SK+D STFLR SETGIVDQVML++N DG KF K+RVRS+RIPQIGDKFASRHGQK
Sbjct: 900 TTKRSSKKDASTFLRASETGIVDQVMLSVNADGNKFVKVRVRSIRIPQIGDKFASRHGQK 959
Query: 66 GT 67
GT
Sbjct: 960 GT 961
>gi|196009726|ref|XP_002114728.1| DNA directed RNA polymerase II polypeptide B [Trichoplax adhaerens]
gi|190582790|gb|EDV22862.1| DNA directed RNA polymerase II polypeptide B [Trichoplax adhaerens]
Length = 1196
Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/65 (76%), Positives = 57/65 (87%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
L T KRF KRD ST LR+SE+GIVDQV+LT++ +GYKF K+RVRSVRIPQIGDKFASRH
Sbjct: 868 LGDTNKRFVKRDASTGLRSSESGIVDQVLLTVSQEGYKFTKVRVRSVRIPQIGDKFASRH 927
Query: 63 GQKGT 67
GQKGT
Sbjct: 928 GQKGT 932
>gi|410610277|gb|AFV74907.1| RNA polymerase II second largest subunit, partial [Olax imbricata]
Length = 568
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 48/64 (75%), Positives = 56/64 (87%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G T R+S+RD ST LR+SETGIVDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 365 QGQTARYSRRDHSTSLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 424
Query: 64 QKGT 67
QKGT
Sbjct: 425 QKGT 428
>gi|46277287|gb|AAS86834.1| RNA polymerase II second largest subunit, partial [Camellia
japonica]
Length = 559
Score = 102 bits (253), Expect = 4e-20, Method: Composition-based stats.
Identities = 46/64 (71%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R++KRD ST LR+SETG+VDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 390 QGPAARYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 449
Query: 64 QKGT 67
QKGT
Sbjct: 450 QKGT 453
>gi|410610285|gb|AFV74911.1| RNA polymerase II second largest subunit, partial [Loranthus kaoi]
Length = 480
Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 48/64 (75%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G RF+KRD ST LR+SETGIVDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 306 QGQASRFTKRDHSTSLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 365
Query: 64 QKGT 67
QKGT
Sbjct: 366 QKGT 369
>gi|520515|gb|AAA50228.1| RNA polymerase II, second largest subunit, partial [Helobdella
stagnalis]
Length = 859
Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 46/66 (69%), Positives = 56/66 (84%)
Query: 2 HLEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASR 61
LEG +R++KRD S F+R SETG+V QVM+T+N DG+KF KIRVR+V+ PQIGDKFASR
Sbjct: 686 ELEGQARRYTKRDCSVFMRKSETGVVGQVMVTINQDGFKFTKIRVRTVKTPQIGDKFASR 745
Query: 62 HGQKGT 67
HGQKGT
Sbjct: 746 HGQKGT 751
>gi|384245445|gb|EIE18939.1| RNA polymerase II second largest subunit [Coccomyxa subellipsoidea
C-169]
Length = 1170
Score = 101 bits (252), Expect = 6e-20, Method: Composition-based stats.
Identities = 45/63 (71%), Positives = 55/63 (87%)
Query: 5 GTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQ 64
G +RFSK+D ST LRNSE+G++DQVM+T N +G +F KIRVRS+RIPQ+GDKFASRHGQ
Sbjct: 880 GVAQRFSKKDVSTSLRNSESGMIDQVMVTTNAEGQRFVKIRVRSIRIPQVGDKFASRHGQ 939
Query: 65 KGT 67
KGT
Sbjct: 940 KGT 942
>gi|256073421|ref|XP_002573029.1| DNA-directed rna polymerase II subunit [Schistosoma mansoni]
Length = 1304
Score = 101 bits (251), Expect = 6e-20, Method: Composition-based stats.
Identities = 43/65 (66%), Positives = 54/65 (83%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
+EG +R++KRD S F+R SE GIVDQVM+T N +G KFCK+RVR+ + PQ+GDKFASRH
Sbjct: 1005 MEGGQRRYTKRDASVFMRRSEYGIVDQVMVTWNNEGNKFCKVRVRTTKAPQVGDKFASRH 1064
Query: 63 GQKGT 67
GQKGT
Sbjct: 1065 GQKGT 1069
>gi|410610275|gb|AFV74906.1| RNA polymerase II second largest subunit, partial [Thesium
chinense]
Length = 566
Score = 101 bits (251), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 47/64 (73%), Positives = 56/64 (87%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G + R++KRD ST LR+SETGIVDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 365 QGQSSRYTKRDHSTSLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 424
Query: 64 QKGT 67
QKGT
Sbjct: 425 QKGT 428
>gi|410610273|gb|AFV74905.1| RNA polymerase II second largest subunit, partial [Santalum album]
Length = 486
Score = 100 bits (250), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 47/64 (73%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R++KRD ST LR+SETGIVDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 311 QGQASRYTKRDHSTSLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 370
Query: 64 QKGT 67
QKGT
Sbjct: 371 QKGT 374
>gi|440801047|gb|ELR22072.1| DNAdirected RNA polymerase, beta subunit [Acanthamoeba castellanii
str. Neff]
Length = 1196
Score = 100 bits (250), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 45/61 (73%), Positives = 54/61 (88%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
+RFSK+D S +R+SETGI+D+VML+ N DGYKFCK+RVRSVR PQIGDKF+SRHGQKG
Sbjct: 907 AQRFSKKDSSISVRSSETGIIDKVMLSTNSDGYKFCKVRVRSVRTPQIGDKFSSRHGQKG 966
Query: 67 T 67
T
Sbjct: 967 T 967
>gi|410610283|gb|AFV74910.1| RNA polymerase II second largest subunit, partial [Champereia
manillana]
Length = 482
Score = 100 bits (250), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 47/64 (73%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R++KRD ST LR+SETGIVDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 306 QGQASRYTKRDHSTSLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 365
Query: 64 QKGT 67
QKGT
Sbjct: 366 QKGT 369
>gi|40643905|emb|CAD89691.1| RNA polymerase II, second largest subunit [Escallonia sp. Oxelman
2340]
Length = 508
Score = 100 bits (250), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 47/64 (73%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R+SKRD ST LR+SETG+VDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 308 QGQASRYSKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 367
Query: 64 QKGT 67
QKGT
Sbjct: 368 QKGT 371
>gi|40641904|emb|CAD88602.1| RNA polymerase II second largest subunit [Alangium platanifolium]
Length = 540
Score = 100 bits (250), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 47/64 (73%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R+S+RD ST LR+SETGIVDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 371 QGQASRYSRRDHSTSLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 430
Query: 64 QKGT 67
QKGT
Sbjct: 431 QKGT 434
>gi|40644039|emb|CAD92460.1| RNA polymerase II [Escallonia sp. Oxelman 2340]
Length = 543
Score = 100 bits (250), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 47/64 (73%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R+SKRD ST LR+SETG+VDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 365 QGQASRYSKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 424
Query: 64 QKGT 67
QKGT
Sbjct: 425 QKGT 428
>gi|226480014|emb|CAX73303.1| putative DNA-directed RNA polymerase II 140 kDa polypeptide (RNA
polymerase II subunit 2) (RPB2) [Schistosoma japonicum]
Length = 1196
Score = 100 bits (250), Expect = 9e-20, Method: Composition-based stats.
Identities = 43/65 (66%), Positives = 54/65 (83%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
+EG +R++KRD S F+R SE GIVDQVM+T N +G KFCK+RVR+ + PQ+GDKFASRH
Sbjct: 897 MEGGQRRYTKRDASVFMRRSEYGIVDQVMVTWNNEGNKFCKVRVRTTKAPQVGDKFASRH 956
Query: 63 GQKGT 67
GQKGT
Sbjct: 957 GQKGT 961
>gi|50058719|gb|AAT69112.1| RNA polymerase II [Odonellia hirtiflora]
Length = 202
Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/64 (73%), Positives = 56/64 (87%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G + R++KRD ST LR+SETGIVDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 85 QGQSARYTKRDHSTSLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 144
Query: 64 QKGT 67
QKGT
Sbjct: 145 QKGT 148
>gi|360044299|emb|CCD81846.1| putative dna-directed rna polymerase II subunit [Schistosoma
mansoni]
Length = 1158
Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 43/65 (66%), Positives = 54/65 (83%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
+EG +R++KRD S F+R SE GIVDQVM+T N +G KFCK+RVR+ + PQ+GDKFASRH
Sbjct: 859 MEGGQRRYTKRDASVFMRRSEYGIVDQVMVTWNNEGNKFCKVRVRTTKAPQVGDKFASRH 918
Query: 63 GQKGT 67
GQKGT
Sbjct: 919 GQKGT 923
>gi|50058735|gb|AAT69120.1| RNA polymerase II [Bonamia media]
Length = 195
Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/64 (73%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R++KRD ST LR+SETGIVDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 68 QGQASRYTKRDHSTSLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 127
Query: 64 QKGT 67
QKGT
Sbjct: 128 QKGT 131
>gi|50058737|gb|AAT69121.1| RNA polymerase II [Neuropeltis acuminata]
Length = 212
Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/64 (73%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R++KRD ST LR+SETGIVDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 92 QGQASRYTKRDHSTSLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 151
Query: 64 QKGT 67
QKGT
Sbjct: 152 QKGT 155
>gi|50058717|gb|AAT69111.1| RNA polymerase II [Iseia luxurians]
Length = 208
Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/64 (73%), Positives = 56/64 (87%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G + R++KRD ST LR+SETGIVDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 102 QGQSARYTKRDHSTSLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 161
Query: 64 QKGT 67
QKGT
Sbjct: 162 QKGT 165
>gi|50058749|gb|AAT69127.1| RNA polymerase II [Erycibe hellwigii]
Length = 210
Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/64 (73%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R++KRD ST LR+SETGIVDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 91 QGQASRYTKRDHSTSLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 150
Query: 64 QKGT 67
QKGT
Sbjct: 151 QKGT 154
>gi|50058745|gb|AAT69125.1| RNA polymerase II [Dicranostyles mildbraediana]
Length = 215
Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/64 (73%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R++KRD ST LR+SETGIVDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 103 QGQASRYTKRDHSTSLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 162
Query: 64 QKGT 67
QKGT
Sbjct: 163 QKGT 166
>gi|70794986|gb|AAZ08467.1| RNA polymerase II second largest subunit [Linanthus californicus]
Length = 733
Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/63 (74%), Positives = 54/63 (85%)
Query: 5 GTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQ 64
G R++KRD ST LR+SETGIVDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 431 GPAARYTKRDHSTSLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 490
Query: 65 KGT 67
KGT
Sbjct: 491 KGT 493
>gi|50058747|gb|AAT69126.1| RNA polymerase II [Maripa glabra]
Length = 228
Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/64 (73%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R++KRD ST LR+SETGIVDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 102 QGQASRYTKRDHSTSLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 161
Query: 64 QKGT 67
QKGT
Sbjct: 162 QKGT 165
>gi|40643897|emb|CAD89687.1| RNA polymerase II, second largest subunit [Ilex x meserveae]
Length = 322
Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/64 (73%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R++KRD ST LR+SETGIVDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 152 QGQASRYTKRDHSTSLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 211
Query: 64 QKGT 67
QKGT
Sbjct: 212 QKGT 215
>gi|50058729|gb|AAT69117.1| RNA polymerase II [Stylisma patens]
Length = 223
Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/64 (73%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R++KRD ST LR+SETGIVDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 99 QGQASRYTKRDHSTSLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 158
Query: 64 QKGT 67
QKGT
Sbjct: 159 QKGT 162
>gi|320166143|gb|EFW43042.1| DNA-directed RNA polymerase II subunit RPB2 [Capsaspora owczarzaki
ATCC 30864]
Length = 1729
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 45/65 (69%), Positives = 54/65 (83%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
L T KR+ KRD ST LR++E GIVD VML++N DG++F K+RVR +RIPQIGDKFASRH
Sbjct: 909 LAQTMKRYRKRDASTALRSTENGIVDTVMLSVNEDGHRFVKVRVRGIRIPQIGDKFASRH 968
Query: 63 GQKGT 67
GQKGT
Sbjct: 969 GQKGT 973
>gi|67810558|gb|AAY81998.1| RNA polymerase II second largest subunit [Spirogyra sp. UWCC FW670]
Length = 670
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 45/61 (73%), Positives = 56/61 (91%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
+RF+KRD ST LR+SE+G++DQV+LT+N DG++F KIRVRS+RIPQIGDKFASRHGQKG
Sbjct: 373 AQRFTKRDQSTTLRHSESGMIDQVILTINNDGFRFVKIRVRSIRIPQIGDKFASRHGQKG 432
Query: 67 T 67
T
Sbjct: 433 T 433
>gi|357438193|ref|XP_003589372.1| DNA-directed RNA polymerase [Medicago truncatula]
gi|355478420|gb|AES59623.1| DNA-directed RNA polymerase [Medicago truncatula]
Length = 1213
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/64 (73%), Positives = 54/64 (84%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R+SKRD S LR+SETGIVDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 908 QGQAARYSKRDHSISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 967
Query: 64 QKGT 67
QKGT
Sbjct: 968 QKGT 971
>gi|410610271|gb|AFV74904.1| RNA polymerase II second largest subunit, partial [Viscum
alniformosanae]
Length = 569
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/64 (73%), Positives = 56/64 (87%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G + R++KRD ST LR+SETGIVDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 365 QGQSFRYTKRDHSTSLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 424
Query: 64 QKGT 67
QKGT
Sbjct: 425 QKGT 428
>gi|50058767|gb|AAT69136.1| RNA polymerase II [Montinia caryophyllacea]
Length = 222
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/64 (71%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R+S+RD ST LR+SETG+VDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 103 QGAAARYSRRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 162
Query: 64 QKGT 67
QKGT
Sbjct: 163 QKGT 166
>gi|50058723|gb|AAT69114.1| RNA polymerase II [Hildebrandtia valo]
Length = 222
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/64 (71%), Positives = 56/64 (87%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G + R++KRD ST LR+SETG+VDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 103 QGQSARYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 162
Query: 64 QKGT 67
QKGT
Sbjct: 163 QKGT 166
>gi|40644555|emb|CAD89596.1| RNA polymerase II, second largest subunit [Myoporum insulare]
Length = 350
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/64 (73%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R++KRD ST LR+SETGIVDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 100 QGQAARYTKRDHSTSLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 159
Query: 64 QKGT 67
QKGT
Sbjct: 160 QKGT 163
>gi|70794970|gb|AAZ08459.1| RNA polymerase II second largest subunit [Astilbe sp. Yoshikawa
s.n.]
Length = 951
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/64 (71%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R++KRD ST LR+SETG+VDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 782 QGQASRYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 841
Query: 64 QKGT 67
QKGT
Sbjct: 842 QKGT 845
>gi|242038711|ref|XP_002466750.1| hypothetical protein SORBIDRAFT_01g013470 [Sorghum bicolor]
gi|241920604|gb|EER93748.1| hypothetical protein SORBIDRAFT_01g013470 [Sorghum bicolor]
Length = 1218
Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 45/64 (70%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R+SKRD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVRIPQIGDKF+SRHG
Sbjct: 915 QGQASRYSKRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHG 974
Query: 64 QKGT 67
QKGT
Sbjct: 975 QKGT 978
>gi|56694288|gb|AAW22884.1| RNA polymerase II second largest subunit [Ophioglossum vulgatum]
Length = 466
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/61 (75%), Positives = 54/61 (88%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
+RFSKRD ST LR+SETG++DQV+LT N DG +F KIRVRSVR+PQIGDKF+SRHGQKG
Sbjct: 359 AQRFSKRDQSTGLRHSETGMIDQVLLTTNADGLRFVKIRVRSVRVPQIGDKFSSRHGQKG 418
Query: 67 T 67
T
Sbjct: 419 T 419
>gi|50058703|gb|AAT69104.1| RNA polymerase II [Ipomoea batatas]
Length = 211
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/64 (71%), Positives = 56/64 (87%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G + R++KRD ST LR+SETG+VDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 90 QGQSARYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 149
Query: 64 QKGT 67
QKGT
Sbjct: 150 QKGT 153
>gi|68300814|gb|AAY89348.1| RNA polymerase II second largest subunit [Antirrhinum majus]
Length = 1200
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/64 (71%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R++KRD ST LR+SETG+VDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 895 QGQAARYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 954
Query: 64 QKGT 67
QKGT
Sbjct: 955 QKGT 958
>gi|46277277|gb|AAS86829.1| RNA polymerase II second largest subunit, partial [Astilbe
chinensis]
Length = 540
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/64 (71%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R++KRD ST LR+SETG+VDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 371 QGQASRYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 430
Query: 64 QKGT 67
QKGT
Sbjct: 431 QKGT 434
>gi|40644996|emb|CAD88981.1| DNA-directed RNA polymerase subunit B [Vicia sativa]
Length = 260
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/64 (73%), Positives = 54/64 (84%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R+SKRD S LR+SETGIVDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 10 QGQAARYSKRDHSISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 69
Query: 64 QKGT 67
QKGT
Sbjct: 70 QKGT 73
>gi|56694298|gb|AAW22889.1| RNA polymerase II second largest subunit [Adiantum tenerum]
Length = 469
Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 45/60 (75%), Positives = 54/60 (90%)
Query: 8 KRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
+R+SKRD ST LR+SE+G+VDQV+LT N DG +F KIRVRS+RIPQIGDKF+SRHGQKGT
Sbjct: 372 QRYSKRDQSTCLRHSESGMVDQVLLTTNADGLRFVKIRVRSIRIPQIGDKFSSRHGQKGT 431
>gi|40642976|emb|CAD90163.1| DNA-directed RNA polymerase II largest subunit [Convolvulus
arvensis]
Length = 321
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/64 (71%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R++KRD ST LR+SETG+VDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 152 QGQAARYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 211
Query: 64 QKGT 67
QKGT
Sbjct: 212 QKGT 215
>gi|46277271|gb|AAS86826.1| RNA polymerase II second largest subunit, partial [Antirrhinum
majus]
Length = 575
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/64 (71%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R++KRD ST LR+SETG+VDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 371 QGQAARYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 430
Query: 64 QKGT 67
QKGT
Sbjct: 431 QKGT 434
>gi|40643998|emb|CAD91516.1| RNA polymerase II second largest subunit [Garrya elliptica]
Length = 576
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/64 (71%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R++KRD ST LR+SETG+VDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 366 QGQASRYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 425
Query: 64 QKGT 67
QKGT
Sbjct: 426 QKGT 429
>gi|46277291|gb|AAS86836.1| RNA polymerase II second largest subunit, partial [Teucrium
fruticans]
Length = 336
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/64 (71%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R++KRD ST LR+SETG+VDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 167 QGQAARYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 226
Query: 64 QKGT 67
QKGT
Sbjct: 227 QKGT 230
>gi|50058725|gb|AAT69115.1| RNA polymerase II [Seddera hirsuta]
Length = 219
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/64 (71%), Positives = 56/64 (87%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G + R++KRD ST LR+SETG+VDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 98 QGQSARYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 157
Query: 64 QKGT 67
QKGT
Sbjct: 158 QKGT 161
>gi|50058713|gb|AAT69109.1| RNA polymerase II [Merremia peltata]
Length = 223
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/64 (71%), Positives = 56/64 (87%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G + R++KRD ST LR+SETG+VDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 98 QGQSSRYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 157
Query: 64 QKGT 67
QKGT
Sbjct: 158 QKGT 161
>gi|50058711|gb|AAT69108.1| RNA polymerase II [Merremia vitifolia]
Length = 213
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/64 (71%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R++KRD ST LR+SETG+VDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 94 QGQASRYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 153
Query: 64 QKGT 67
QKGT
Sbjct: 154 QKGT 157
>gi|50058755|gb|AAT69130.1| RNA polymerase II [Dinetus truncatus]
Length = 227
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/64 (71%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R++KRD ST LR+SETG+VDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 100 QGQAARYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 159
Query: 64 QKGT 67
QKGT
Sbjct: 160 QKGT 163
>gi|50058739|gb|AAT69122.1| RNA polymerase II [Rapona tiliifolia]
Length = 212
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/64 (71%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R++KRD ST LR+SETG+VDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 92 QGQAARYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 151
Query: 64 QKGT 67
QKGT
Sbjct: 152 QKGT 155
>gi|50058757|gb|AAT69131.1| RNA polymerase II [Porana commixta]
Length = 212
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/64 (71%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R++KRD ST LR+SETG+VDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 92 QGQAARYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 151
Query: 64 QKGT 67
QKGT
Sbjct: 152 QKGT 155
>gi|50058761|gb|AAT69133.1| RNA polymerase II [Cuscuta japonica]
Length = 185
Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/64 (71%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R++KRD ST LR+SETG+VDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 91 QGQAARYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 150
Query: 64 QKGT 67
QKGT
Sbjct: 151 QKGT 154
>gi|50058705|gb|AAT69105.1| RNA polymerase II [Astripomoea malvacea]
Length = 210
Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/64 (71%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R++KRD ST LR+SETG+VDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 91 QGQNARYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 150
Query: 64 QKGT 67
QKGT
Sbjct: 151 QKGT 154
>gi|4867793|emb|CAB43061.1| RNA polymerase II [Buddleja asiatica]
Length = 260
Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/64 (71%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R++KRD ST LR+SETG+VDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 8 QGQAARYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 67
Query: 64 QKGT 67
QKGT
Sbjct: 68 QKGT 71
>gi|50058707|gb|AAT69106.1| RNA polymerase II [Lepistemon owariensis]
Length = 225
Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/64 (71%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R++KRD ST LR+SETG+VDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 100 QGQAARYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 159
Query: 64 QKGT 67
QKGT
Sbjct: 160 QKGT 163
>gi|410610287|gb|AFV74912.1| RNA polymerase II second largest subunit, partial [Schoepfia
jasminodora]
Length = 569
Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/64 (71%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R++KRD ST LR+SETG+VDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 365 QGQATRYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 424
Query: 64 QKGT 67
QKGT
Sbjct: 425 QKGT 428
>gi|50058743|gb|AAT69124.1| RNA polymerase II [Jacquemontia blanchetii]
Length = 208
Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/64 (71%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R++KRD ST LR+SETG+VDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 84 QGQAARYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 143
Query: 64 QKGT 67
QKGT
Sbjct: 144 QKGT 147
>gi|50058709|gb|AAT69107.1| RNA polymerase II [Ipomoea pes-tigridis]
Length = 215
Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/64 (71%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R++KRD ST LR+SETG+VDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 97 QGQAARYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 156
Query: 64 QKGT 67
QKGT
Sbjct: 157 QKGT 160
>gi|50058753|gb|AAT69129.1| RNA polymerase II [Poranopsis paniculata]
Length = 221
Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/64 (71%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R++KRD ST LR+SETG+VDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 99 QGQAARYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 158
Query: 64 QKGT 67
QKGT
Sbjct: 159 QKGT 162
>gi|50058731|gb|AAT69118.1| RNA polymerase II [Falkia repens]
Length = 210
Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/64 (71%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R++KRD ST LR+SETG+VDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 103 QGPNARYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 162
Query: 64 QKGT 67
QKGT
Sbjct: 163 QKGT 166
>gi|50058733|gb|AAT69119.1| RNA polymerase II [Porana velutina]
Length = 223
Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/64 (71%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R++KRD ST LR+SETG+VDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 102 QGQNARYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 161
Query: 64 QKGT 67
QKGT
Sbjct: 162 QKGT 165
>gi|50058715|gb|AAT69110.1| RNA polymerase II [Convolvulus sabatius subsp. mauritanicus]
Length = 219
Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/64 (71%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R++KRD ST LR+SETG+VDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 92 QGQAARYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 151
Query: 64 QKGT 67
QKGT
Sbjct: 152 QKGT 155
>gi|68131834|gb|AAY85195.1| RNA polymerase II second largest subunit [Callistemon subulatus]
Length = 952
Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/64 (71%), Positives = 54/64 (84%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R+S+RD S LR+SETGIVDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 783 QGQASRYSRRDHSISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 842
Query: 64 QKGT 67
QKGT
Sbjct: 843 QKGT 846
>gi|358337637|dbj|GAA55991.1| DNA-directed RNA polymerase II subunit RPB2 [Clonorchis sinensis]
Length = 1921
Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 43/65 (66%), Positives = 54/65 (83%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
+EG +R++KRD S F+R SE GIVDQVM+T N +G KFCK+RVR+ + PQ+GDKFASRH
Sbjct: 1622 MEGGQRRYTKRDASVFMRRSEYGIVDQVMITWNNEGNKFCKVRVRTTKTPQVGDKFASRH 1681
Query: 63 GQKGT 67
GQKGT
Sbjct: 1682 GQKGT 1686
>gi|50058765|gb|AAT69135.1| RNA polymerase II [Schizanthus pinnatus]
Length = 272
Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/64 (71%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R++KRD ST LR+SETG+VDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 92 QGQATRYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 151
Query: 64 QKGT 67
QKGT
Sbjct: 152 QKGT 155
>gi|66806179|ref|XP_636812.1| RNA polymerase II core subunit [Dictyostelium discoideum AX4]
gi|74896933|sp|Q54J75.1|RPB2_DICDI RecName: Full=DNA-directed RNA polymerase II subunit rpb2;
Short=RNA polymerase II subunit 2; Short=RNA polymerase
II subunit B2
gi|60465215|gb|EAL63310.1| RNA polymerase II core subunit [Dictyostelium discoideum AX4]
Length = 1170
Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 45/61 (73%), Positives = 56/61 (91%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+R +KRD ST LR+SETGIVDQV+LT + +G+KFCK+RVRS+R+PQIGDKF+SRHGQKG
Sbjct: 880 TRRHTKRDSSTALRSSETGIVDQVILTTSGEGFKFCKVRVRSMRVPQIGDKFSSRHGQKG 939
Query: 67 T 67
T
Sbjct: 940 T 940
>gi|70794966|gb|AAZ08457.1| RNA polymerase II second largest subunit [Rhododendron
macrophyllum]
Length = 1191
Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 45/64 (70%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R+++RD ST LR+SETG+VDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 886 QGPAARYTRRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 945
Query: 64 QKGT 67
QKGT
Sbjct: 946 QKGT 949
>gi|208609807|dbj|BAG72365.1| RNA polymerase II second largest subunit [Litsea garciae]
Length = 167
Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 45/64 (70%), Positives = 56/64 (87%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G T R+++RD ST LR+SE+GIVDQV+LT N DG +F K+R+RSVRIPQIGDKF+SRHG
Sbjct: 42 QGQTSRYTRRDHSTSLRHSESGIVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHG 101
Query: 64 QKGT 67
QKGT
Sbjct: 102 QKGT 105
>gi|208609805|dbj|BAG72364.1| RNA polymerase II second largest subunit [Litsea garciae]
Length = 167
Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 45/64 (70%), Positives = 56/64 (87%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G T R+++RD ST LR+SE+GIVDQV+LT N DG +F K+R+RSVRIPQIGDKF+SRHG
Sbjct: 42 QGQTSRYTRRDHSTSLRHSESGIVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHG 101
Query: 64 QKGT 67
QKGT
Sbjct: 102 QKGT 105
>gi|208609803|dbj|BAG72363.1| RNA polymerase II second largest subunit [Litsea garciae]
Length = 167
Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 45/64 (70%), Positives = 56/64 (87%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G T R+++RD ST LR+SE+GIVDQV+LT N DG +F K+R+RSVRIPQIGDKF+SRHG
Sbjct: 42 QGQTSRYTRRDHSTSLRHSESGIVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHG 101
Query: 64 QKGT 67
QKGT
Sbjct: 102 QKGT 105
>gi|46277285|gb|AAS86833.1| RNA polymerase II second largest subunit, partial [Rhododendron
macrophyllum]
Length = 549
Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 45/64 (70%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R+++RD ST LR+SETG+VDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 371 QGPAARYTRRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 430
Query: 64 QKGT 67
QKGT
Sbjct: 431 QKGT 434
>gi|50058727|gb|AAT69116.1| RNA polymerase II [Evolvulus glomeratus]
Length = 228
Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 45/64 (70%), Positives = 56/64 (87%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G + R++KRD ST LR+SETG+VDQV++T N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 101 QGQSARYTKRDHSTSLRHSETGMVDQVLMTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 160
Query: 64 QKGT 67
QKGT
Sbjct: 161 QKGT 164
>gi|56694306|gb|AAW22893.1| RNA polymerase II second largest subunit [Dryopteris filix-mas]
Length = 459
Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 45/61 (73%), Positives = 54/61 (88%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
+R+SKRD ST LR+SE+G+VDQV+LT N DG +F KIRVRS+RIPQIGDKF+SRHGQKG
Sbjct: 361 AQRYSKRDQSTCLRHSESGMVDQVLLTTNADGLRFVKIRVRSIRIPQIGDKFSSRHGQKG 420
Query: 67 T 67
T
Sbjct: 421 T 421
>gi|46277279|gb|AAS86830.1| RPB140, partial [Liquidambar acalycina]
Length = 540
Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 45/64 (70%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R+++RD ST LR+SETG+VDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 371 QGQASRYTRRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 430
Query: 64 QKGT 67
QKGT
Sbjct: 431 QKGT 434
>gi|50058759|gb|AAT69132.1| RNA polymerase II [Cuscuta europaea]
Length = 191
Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 45/64 (70%), Positives = 54/64 (84%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R++KRD ST L +SETG+VDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 64 QGQAARYTKRDHSTILPHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 123
Query: 64 QKGT 67
QKGT
Sbjct: 124 QKGT 127
>gi|108710089|gb|ABF97884.1| DNA-directed RNA polymerase II 135 kDa polypeptide, putative,
expressed [Oryza sativa Japonica Group]
gi|125545063|gb|EAY91202.1| hypothetical protein OsI_12811 [Oryza sativa Indica Group]
Length = 1222
Score = 98.6 bits (244), Expect = 5e-19, Method: Composition-based stats.
Identities = 44/64 (68%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R++KRD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVRIPQIGDKF+SRHG
Sbjct: 919 QGQATRYTKRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHG 978
Query: 64 QKGT 67
QKGT
Sbjct: 979 QKGT 982
>gi|56694312|gb|AAW22896.1| RNA polymerase II second largest subunit [Stenochlaena tenuifolia]
Length = 434
Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 45/61 (73%), Positives = 54/61 (88%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
+R+SKRD ST LR+SE+G+VDQV+LT N DG +F KIRVRS+RIPQIGDKF+SRHGQKG
Sbjct: 349 AQRYSKRDQSTCLRHSESGMVDQVLLTTNADGLRFVKIRVRSIRIPQIGDKFSSRHGQKG 408
Query: 67 T 67
T
Sbjct: 409 T 409
>gi|40644041|emb|CAD92463.1| RNA polymerase II [Evolvulus sp. Stefanovic s.n.]
Length = 270
Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 45/64 (70%), Positives = 56/64 (87%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G + R++KRD ST LR+SETG+VDQV++T N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 101 QGQSARYTKRDHSTSLRHSETGMVDQVLMTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 160
Query: 64 QKGT 67
QKGT
Sbjct: 161 QKGT 164
>gi|4867856|emb|CAB43079.1| RNA polymerase II [Peltanthera floribunda]
Length = 260
Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 46/64 (71%), Positives = 54/64 (84%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R++KRD ST LR+SETG VDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 10 QGQAARYTKRDHSTSLRHSETGTVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 69
Query: 64 QKGT 67
QKGT
Sbjct: 70 QKGT 73
>gi|56694304|gb|AAW22892.1| RNA polymerase II second largest subunit [Dicksonia antarctica]
Length = 525
Score = 98.2 bits (243), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 45/61 (73%), Positives = 54/61 (88%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
+R+SKRD ST LR+SE+G+VDQV+LT N DG +F KIRVRS+RIPQIGDKF+SRHGQKG
Sbjct: 357 AQRYSKRDQSTCLRHSESGMVDQVLLTTNADGLRFVKIRVRSIRIPQIGDKFSSRHGQKG 416
Query: 67 T 67
T
Sbjct: 417 T 417
>gi|56694310|gb|AAW22895.1| RNA polymerase II second largest subunit [Polystichum lonchitis]
Length = 527
Score = 98.2 bits (243), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 45/61 (73%), Positives = 54/61 (88%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
+R+SKRD ST LR+SE+G+VDQV+LT N DG +F KIRVRS+RIPQIGDKF+SRHGQKG
Sbjct: 371 AQRYSKRDQSTCLRHSESGMVDQVLLTTNADGLRFVKIRVRSIRIPQIGDKFSSRHGQKG 430
Query: 67 T 67
T
Sbjct: 431 T 431
>gi|50058751|gb|AAT69128.1| RNA polymerase II [Erycibe glomerata]
Length = 211
Score = 98.2 bits (243), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 46/64 (71%), Positives = 54/64 (84%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+ R++KRD ST LR+SETGIVDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 98 DAQASRYTKRDHSTSLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 157
Query: 64 QKGT 67
QKGT
Sbjct: 158 QKGT 161
>gi|40644545|emb|CAD88975.1| DNA-directed RNA polymerase subunit B [Myrtus communis]
Length = 572
Score = 98.2 bits (243), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 46/63 (73%), Positives = 53/63 (84%)
Query: 5 GTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQ 64
G R+S+RD S LR+SETGIVDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 376 GXASRYSRRDHSISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 435
Query: 65 KGT 67
KGT
Sbjct: 436 KGT 438
>gi|68300804|gb|AAY89344.1| RNA polymerase II second largest subunit [Petunia x hybrida]
Length = 1203
Score = 98.2 bits (243), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 45/64 (70%), Positives = 56/64 (87%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G + R++++D ST LR+SETGIVDQV+LT N DG +F KIR+RSVRIPQIGDKF+SRHG
Sbjct: 900 QGQSARYTRKDHSTSLRHSETGIVDQVLLTTNADGLRFVKIRMRSVRIPQIGDKFSSRHG 959
Query: 64 QKGT 67
QKGT
Sbjct: 960 QKGT 963
>gi|40643911|emb|CAD89878.1| RNA polymerase II, second largest subunit [Doronicum orientale]
Length = 326
Score = 98.2 bits (243), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 45/64 (70%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R+++RD ST LR+SETG+VDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 155 QGQASRYTRRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 214
Query: 64 QKGT 67
QKGT
Sbjct: 215 QKGT 218
>gi|255556051|ref|XP_002519060.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
gi|223541723|gb|EEF43271.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
Length = 1194
Score = 98.2 bits (243), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 45/64 (70%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G + R+++RD S LR+SETGIVDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 889 QGQSARYTRRDHSISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 948
Query: 64 QKGT 67
QKGT
Sbjct: 949 QKGT 952
>gi|40645025|emb|CAD92461.1| RNA polymerase II [Valeriana officinalis]
Length = 364
Score = 98.2 bits (243), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 45/64 (70%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R+++RD ST LR+SETG+VDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 160 QGQASRYTRRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 219
Query: 64 QKGT 67
QKGT
Sbjct: 220 QKGT 223
>gi|4867854|emb|CAB43082.1| RNA polymerase II [Retzia capensis]
Length = 256
Score = 98.2 bits (243), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 46/64 (71%), Positives = 54/64 (84%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R++KRD ST LR+SETGIVDQV+LT N DG +F K+RVRSVRIPQ GDKF+SRHG
Sbjct: 10 QGQAARYTKRDHSTSLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQXGDKFSSRHG 69
Query: 64 QKGT 67
QKGT
Sbjct: 70 QKGT 73
>gi|350539902|ref|NP_001234825.1| RNA polymerase II second largest subunit [Solanum lycopersicum]
gi|68300807|gb|AAY89345.1| RNA polymerase II second largest subunit [Solanum lycopersicum]
Length = 1205
Score = 98.2 bits (243), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 45/64 (70%), Positives = 56/64 (87%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G + R++++D ST LR+SETGIVDQV+LT N DG +F KIR+RSVRIPQIGDKF+SRHG
Sbjct: 905 QGQSARYTRKDHSTSLRHSETGIVDQVLLTTNADGLRFVKIRMRSVRIPQIGDKFSSRHG 964
Query: 64 QKGT 67
QKGT
Sbjct: 965 QKGT 968
>gi|2736117|gb|AAB94059.1| RPB140 [Hordeum vulgare]
Length = 555
Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 45/64 (70%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R+SKRD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVRIPQIGDKF+SRHG
Sbjct: 377 QGQATRYSKRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHG 436
Query: 64 QKGT 67
QKGT
Sbjct: 437 QKGT 440
>gi|40644557|emb|CAD89597.1| RNA polymerase II, second largest subunit [Senecio vulgaris]
Length = 325
Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 45/64 (70%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R+++RD ST LR+SETG+VDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 153 QGQASRYTRRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 212
Query: 64 QKGT 67
QKGT
Sbjct: 213 QKGT 216
>gi|4867878|emb|CAB43080.1| RNA polymerase II [Pinckneya pubescens]
Length = 263
Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 46/59 (77%), Positives = 53/59 (89%)
Query: 9 RFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
R++KRD ST LR+SETGIVDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHGQKGT
Sbjct: 18 RYTKRDHSTSLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGT 76
>gi|208609711|dbj|BAG72317.1| RNA polymerase II second largest subunit [Actinodaphne malaccensis]
Length = 167
Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 44/64 (68%), Positives = 56/64 (87%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G T R+++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVRIPQIGDKF+SRHG
Sbjct: 42 QGQTSRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHG 101
Query: 64 QKGT 67
QKGT
Sbjct: 102 QKGT 105
>gi|56675684|emb|CAB43058.2| RNA polymerase II [Anthocleista grandiflora]
Length = 257
Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 46/59 (77%), Positives = 53/59 (89%)
Query: 9 RFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
R++KRD ST LR+SETGIVDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHGQKGT
Sbjct: 13 RYTKRDHSTXLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGT 71
>gi|357120315|ref|XP_003561873.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
[Brachypodium distachyon]
Length = 1228
Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 45/64 (70%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R+SKRD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVRIPQIGDKF+SRHG
Sbjct: 925 QGQATRYSKRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHG 984
Query: 64 QKGT 67
QKGT
Sbjct: 985 QKGT 988
>gi|4867872|emb|CAB43073.1| RNA polymerase II [Mussaenda erythrophylla]
Length = 261
Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 46/59 (77%), Positives = 53/59 (89%)
Query: 9 RFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
R++KRD ST LR+SETGIVDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHGQKGT
Sbjct: 17 RYTKRDHSTSLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGT 75
>gi|4867880|emb|CAB43083.1| RNA polymerase II [Rondeletia odorata]
Length = 261
Score = 97.8 bits (242), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 46/59 (77%), Positives = 53/59 (89%)
Query: 9 RFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
R++KRD ST LR+SETGIVDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHGQKGT
Sbjct: 16 RYTKRDHSTSLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGT 74
>gi|224031673|gb|ACN34912.1| unknown [Zea mays]
gi|413933608|gb|AFW68159.1| putative DNA-directed RNA polymerase II subunit family protein [Zea
mays]
Length = 362
Score = 97.8 bits (242), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 45/64 (70%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R+SKRD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVRIPQIGDKF+SRHG
Sbjct: 59 QGQASRYSKRDHSTALRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHG 118
Query: 64 QKGT 67
QKGT
Sbjct: 119 QKGT 122
>gi|3746598|gb|AAC64014.1| RNA polymerase II subunit 2 [Kopsia fruticosa]
Length = 259
Score = 97.8 bits (242), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 45/64 (70%), Positives = 56/64 (87%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G + RF++RD ST LR+SETGIVDQV+LT N DG +F K+R+RSVR+PQIGDKF+SRHG
Sbjct: 9 QGQSARFTRRDHSTSLRHSETGIVDQVLLTTNADGLRFVKVRMRSVRLPQIGDKFSSRHG 68
Query: 64 QKGT 67
QKGT
Sbjct: 69 QKGT 72
>gi|410610281|gb|AFV74909.1| RNA polymerase II second largest subunit, partial [Balanophora
laxiflora]
Length = 569
Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 45/64 (70%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R++++D ST LR+SETGIVDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 365 QGQASRYTRQDHSTSLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 424
Query: 64 QKGT 67
QKGT
Sbjct: 425 QKGT 428
>gi|40644994|emb|CAD88980.1| DNA-directed RNA polymerase subunit B [Vicia sativa]
Length = 401
Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 46/64 (71%), Positives = 53/64 (82%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R+SKRD S LR+SE GIVDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 152 QGQAARYSKRDHSISLRHSENGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 211
Query: 64 QKGT 67
QKGT
Sbjct: 212 QKGT 215
>gi|208609819|dbj|BAG72371.1| RNA polymerase II second largest subunit [Litsea grandis]
Length = 162
Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 44/64 (68%), Positives = 56/64 (87%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G T R+++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVRIPQIGDKF+SRHG
Sbjct: 42 QGQTSRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHG 101
Query: 64 QKGT 67
QKGT
Sbjct: 102 QKGT 105
>gi|208609841|dbj|BAG72382.1| RNA polymerase II second largest subunit [Litsea resinosa]
Length = 167
Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 44/64 (68%), Positives = 56/64 (87%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G T R+++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVRIPQIGDKF+SRHG
Sbjct: 42 QGQTSRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHG 101
Query: 64 QKGT 67
QKGT
Sbjct: 102 QKGT 105
>gi|313227690|emb|CBY22838.1| unnamed protein product [Oikopleura dioica]
Length = 1187
Score = 97.8 bits (242), Expect = 7e-19, Method: Composition-based stats.
Identities = 42/65 (64%), Positives = 55/65 (84%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
L+ T K+++K+D S F + +E GI+D VM+T+N DGYKF KIR+RSVRIP++GDKFASRH
Sbjct: 882 LDPTAKKYTKKDASLFAKPTEKGIIDSVMVTINEDGYKFVKIRLRSVRIPEVGDKFASRH 941
Query: 63 GQKGT 67
GQKGT
Sbjct: 942 GQKGT 946
>gi|46277275|gb|AAS86828.1| RNA polymerase II second largest subunit, partial [Acer circinatum]
Length = 580
Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 45/64 (70%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G + R+++RD S LR+SETGIVDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 378 QGQSSRYTRRDHSISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 437
Query: 64 QKGT 67
QKGT
Sbjct: 438 QKGT 441
>gi|56675686|emb|CAB43081.2| RNA polymerase II [Potalia resinifera]
Length = 250
Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 46/59 (77%), Positives = 53/59 (89%)
Query: 9 RFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
R++KRD ST LR+SETGIVDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHGQKGT
Sbjct: 17 RYTKRDHSTSLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGT 75
>gi|208609849|dbj|BAG72386.1| RNA polymerase II second largest subunit [Litsea rubicunda]
Length = 167
Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 44/64 (68%), Positives = 56/64 (87%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G T R+++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVRIPQIGDKF+SRHG
Sbjct: 42 QGQTSRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHG 101
Query: 64 QKGT 67
QKGT
Sbjct: 102 QKGT 105
>gi|208609695|dbj|BAG72309.1| RNA polymerase II second largest subunit [Actinodaphne macrophylla]
Length = 167
Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 44/64 (68%), Positives = 56/64 (87%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G T R+++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVRIPQIGDKF+SRHG
Sbjct: 42 QGQTSRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHG 101
Query: 64 QKGT 67
QKGT
Sbjct: 102 QKGT 105
>gi|40644724|emb|CAD92664.1| RNA polymerase II [Solanum lycopersicum]
Length = 342
Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 45/64 (70%), Positives = 56/64 (87%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G + R++++D ST LR+SETGIVDQV+LT N DG +F KIR+RSVRIPQIGDKF+SRHG
Sbjct: 142 QGQSARYTRKDHSTSLRHSETGIVDQVLLTTNADGLRFVKIRMRSVRIPQIGDKFSSRHG 201
Query: 64 QKGT 67
QKGT
Sbjct: 202 QKGT 205
>gi|208609751|dbj|BAG72337.1| RNA polymerase II second largest subunit [Lindera polyantha]
Length = 167
Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 44/64 (68%), Positives = 56/64 (87%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G T R+++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVRIPQIGDKF+SRHG
Sbjct: 42 QGQTSRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHG 101
Query: 64 QKGT 67
QKGT
Sbjct: 102 QKGT 105
>gi|208609797|dbj|BAG72360.1| RNA polymerase II second largest subunit [Litsea ferruginea]
Length = 170
Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 44/64 (68%), Positives = 56/64 (87%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G T R+++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVRIPQIGDKF+SRHG
Sbjct: 42 QGQTSRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHG 101
Query: 64 QKGT 67
QKGT
Sbjct: 102 QKGT 105
>gi|208609811|dbj|BAG72367.1| RNA polymerase II second largest subunit [Litsea globularia]
Length = 167
Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 44/64 (68%), Positives = 56/64 (87%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G T R+++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVRIPQIGDKF+SRHG
Sbjct: 42 QGQTSRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHG 101
Query: 64 QKGT 67
QKGT
Sbjct: 102 QKGT 105
>gi|208609731|dbj|BAG72327.1| RNA polymerase II second largest subunit [Lindera erythrocarpa]
Length = 167
Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 44/64 (68%), Positives = 56/64 (87%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G T R+++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVRIPQIGDKF+SRHG
Sbjct: 42 QGQTSRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHG 101
Query: 64 QKGT 67
QKGT
Sbjct: 102 QKGT 105
>gi|208609737|dbj|BAG72330.1| RNA polymerase II second largest subunit [Lindera glauca]
Length = 167
Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 44/64 (68%), Positives = 56/64 (87%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G T R+++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVRIPQIGDKF+SRHG
Sbjct: 42 QGQTSRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHG 101
Query: 64 QKGT 67
QKGT
Sbjct: 102 QKGT 105
>gi|68300799|gb|AAY89342.1| RNA polymerase II second largest subunit [Nicotiana sylvestris]
Length = 1203
Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 45/64 (70%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R++++D ST LR+SETGIVDQV+LT N DG +F KIR+RSVRIPQIGDKF+SRHG
Sbjct: 900 QGQPARYTQKDHSTSLRHSETGIVDQVLLTTNADGLRFVKIRMRSVRIPQIGDKFSSRHG 959
Query: 64 QKGT 67
QKGT
Sbjct: 960 QKGT 963
>gi|208609741|dbj|BAG72332.1| RNA polymerase II second largest subunit [Lindera glauca]
Length = 167
Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 44/64 (68%), Positives = 56/64 (87%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G T R+++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVRIPQIGDKF+SRHG
Sbjct: 42 QGQTSRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHG 101
Query: 64 QKGT 67
QKGT
Sbjct: 102 QKGT 105
>gi|208609733|dbj|BAG72328.1| RNA polymerase II second largest subunit [Lindera glauca]
gi|208609821|dbj|BAG72372.1| RNA polymerase II second largest subunit [Litsea grandis]
Length = 167
Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 44/64 (68%), Positives = 56/64 (87%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G T R+++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVRIPQIGDKF+SRHG
Sbjct: 42 QGQTSRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHG 101
Query: 64 QKGT 67
QKGT
Sbjct: 102 QKGT 105
>gi|414871743|tpg|DAA50300.1| TPA: putative DNA-directed RNA polymerase II subunit family protein
[Zea mays]
Length = 362
Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 45/64 (70%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R+SKRD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVRIPQIGDKF+SRHG
Sbjct: 59 QGQASRYSKRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHG 118
Query: 64 QKGT 67
QKGT
Sbjct: 119 QKGT 122
>gi|208609699|dbj|BAG72311.1| RNA polymerase II second largest subunit [Actinodaphne macrophylla]
Length = 167
Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 44/64 (68%), Positives = 56/64 (87%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G T R+++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVRIPQIGDKF+SRHG
Sbjct: 42 QGQTSRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHG 101
Query: 64 QKGT 67
QKGT
Sbjct: 102 QKGT 105
>gi|3746592|gb|AAC64011.1| RNA polymerase II subunit 2 [Mostuea brunonis]
Length = 261
Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 46/59 (77%), Positives = 53/59 (89%)
Query: 9 RFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
R++KRD ST LR+SETGIVDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHGQKGT
Sbjct: 11 RYTKRDHSTSLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGT 69
>gi|4867893|emb|CAB43087.1| RNA polymerase II [Sanango racemosum]
Length = 259
Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 46/64 (71%), Positives = 53/64 (82%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R+ KRD ST LR+SETGIVDQV+LT N DG +F K+RVRSVRIPQIGD F+SRHG
Sbjct: 8 QGQAARYXKRDHSTSLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDXFSSRHG 67
Query: 64 QKGT 67
QKGT
Sbjct: 68 QKGT 71
>gi|208609689|dbj|BAG72306.1| RNA polymerase II second largest subunit [Actinodaphne glomerata]
gi|208609691|dbj|BAG72307.1| RNA polymerase II second largest subunit [Actinodaphne glomerata]
gi|208609697|dbj|BAG72310.1| RNA polymerase II second largest subunit [Actinodaphne macrophylla]
gi|208609701|dbj|BAG72312.1| RNA polymerase II second largest subunit [Actinodaphne macrophylla]
gi|208609703|dbj|BAG72313.1| RNA polymerase II second largest subunit [Actinodaphne macrophylla]
gi|208609705|dbj|BAG72314.1| RNA polymerase II second largest subunit [Actinodaphne maingayi]
gi|208609707|dbj|BAG72315.1| RNA polymerase II second largest subunit [Actinodaphne maingayi]
gi|208609709|dbj|BAG72316.1| RNA polymerase II second largest subunit [Actinodaphne malaccensis]
gi|208609713|dbj|BAG72318.1| RNA polymerase II second largest subunit [Actinodaphne malaccensis]
gi|208609717|dbj|BAG72320.1| RNA polymerase II second largest subunit [Actinodaphne malaccensis]
gi|208609719|dbj|BAG72321.1| RNA polymerase II second largest subunit [Actinodaphne myriantha]
gi|208609721|dbj|BAG72322.1| RNA polymerase II second largest subunit [Actinodaphne myriantha]
gi|208609723|dbj|BAG72323.1| RNA polymerase II second largest subunit [Actinodaphne procera]
gi|208609725|dbj|BAG72324.1| RNA polymerase II second largest subunit [Actinodaphne procera]
gi|208609727|dbj|BAG72325.1| RNA polymerase II second largest subunit [Actinodaphne procera]
gi|208609735|dbj|BAG72329.1| RNA polymerase II second largest subunit [Lindera glauca]
gi|208609739|dbj|BAG72331.1| RNA polymerase II second largest subunit [Lindera glauca]
gi|208609743|dbj|BAG72333.1| RNA polymerase II second largest subunit [Lindera lucida]
gi|208609745|dbj|BAG72334.1| RNA polymerase II second largest subunit [Lindera lucida]
gi|208609747|dbj|BAG72335.1| RNA polymerase II second largest subunit [Lindera obtusiloba]
gi|208609749|dbj|BAG72336.1| RNA polymerase II second largest subunit [Lindera obtusiloba]
gi|208609753|dbj|BAG72338.1| RNA polymerase II second largest subunit [Lindera polyantha]
gi|208609755|dbj|BAG72339.1| RNA polymerase II second largest subunit [Lindera polyantha]
gi|208609757|dbj|BAG72340.1| RNA polymerase II second largest subunit [Lindera aggregata]
gi|208609759|dbj|BAG72341.1| RNA polymerase II second largest subunit [Lindera umbellata]
gi|208609761|dbj|BAG72342.1| RNA polymerase II second largest subunit [Lindera umbellata]
gi|208609763|dbj|BAG72343.1| RNA polymerase II second largest subunit [Litsea accedens]
gi|208609765|dbj|BAG72344.1| RNA polymerase II second largest subunit [Litsea accedens]
gi|208609769|dbj|BAG72346.1| RNA polymerase II second largest subunit [Litsea caulocarpa]
gi|208609771|dbj|BAG72347.1| RNA polymerase II second largest subunit [Litsea caulocarpa]
gi|208609773|dbj|BAG72348.1| RNA polymerase II second largest subunit [Litsea costalis]
gi|208609775|dbj|BAG72349.1| RNA polymerase II second largest subunit [Litsea costalis]
gi|208609777|dbj|BAG72350.1| RNA polymerase II second largest subunit [Litsea cubeba]
gi|208609779|dbj|BAG72351.1| RNA polymerase II second largest subunit [Litsea cubeba]
gi|208609781|dbj|BAG72352.1| RNA polymerase II second largest subunit [Litsea diversifolia]
gi|208609783|dbj|BAG72353.1| RNA polymerase II second largest subunit [Litsea erectinervia]
gi|208609785|dbj|BAG72354.1| RNA polymerase II second largest subunit [Litsea erectinervia]
gi|208609787|dbj|BAG72355.1| RNA polymerase II second largest subunit [Litsea erectinervia]
gi|208609789|dbj|BAG72356.1| RNA polymerase II second largest subunit [Litsea fenestrata]
gi|208609791|dbj|BAG72357.1| RNA polymerase II second largest subunit [Litsea fenestrata]
gi|208609793|dbj|BAG72358.1| RNA polymerase II second largest subunit [Litsea fenestrata]
gi|208609795|dbj|BAG72359.1| RNA polymerase II second largest subunit [Litsea ferruginea]
gi|208609799|dbj|BAG72361.1| RNA polymerase II second largest subunit [Litsea ferruginea]
gi|208609801|dbj|BAG72362.1| RNA polymerase II second largest subunit [Litsea garciae]
gi|208609809|dbj|BAG72366.1| RNA polymerase II second largest subunit [Litsea globularia]
gi|208609813|dbj|BAG72368.1| RNA polymerase II second largest subunit [Litsea glutinosa]
gi|208609815|dbj|BAG72369.1| RNA polymerase II second largest subunit [Litsea glutinosa]
gi|208609817|dbj|BAG72370.1| RNA polymerase II second largest subunit [Litsea glutinosa]
gi|208609823|dbj|BAG72373.1| RNA polymerase II second largest subunit [Litsea lancifolia]
gi|208609825|dbj|BAG72374.1| RNA polymerase II second largest subunit [Litsea lancifolia]
gi|208609827|dbj|BAG72375.1| RNA polymerase II second largest subunit [Litsea lancifolia]
gi|208609829|dbj|BAG72376.1| RNA polymerase II second largest subunit [Litsea machilifolia]
gi|208609831|dbj|BAG72377.1| RNA polymerase II second largest subunit [Litsea maingayi]
gi|208609833|dbj|BAG72378.1| RNA polymerase II second largest subunit [Litsea maingayi]
gi|208609835|dbj|BAG72379.1| RNA polymerase II second largest subunit [Litsea maingayi]
gi|208609837|dbj|BAG72380.1| RNA polymerase II second largest subunit [Litsea noronhae]
gi|208609839|dbj|BAG72381.1| RNA polymerase II second largest subunit [Litsea noronhae]
gi|208609845|dbj|BAG72384.1| RNA polymerase II second largest subunit [Litsea resinosa]
gi|208609847|dbj|BAG72385.1| RNA polymerase II second largest subunit [Litsea rubicunda]
gi|208609851|dbj|BAG72387.1| RNA polymerase II second largest subunit [Litsea rubicunda]
gi|208609853|dbj|BAG72388.1| RNA polymerase II second largest subunit [Litsea tomentosa]
gi|208609855|dbj|BAG72389.1| RNA polymerase II second largest subunit [Machilus rimosa]
gi|208609857|dbj|BAG72390.1| RNA polymerase II second largest subunit [Machilus rimosa]
gi|208609861|dbj|BAG72392.1| RNA polymerase II second largest subunit [Neolitsea aciculata]
gi|208609863|dbj|BAG72393.1| RNA polymerase II second largest subunit [Neolitsea aciculata]
gi|208609865|dbj|BAG72394.1| RNA polymerase II second largest subunit [Neolitsea cassia]
gi|208609867|dbj|BAG72395.1| RNA polymerase II second largest subunit [Neolitsea cassia]
gi|208609871|dbj|BAG72397.1| RNA polymerase II second largest subunit [Neolitsea javanica]
gi|208609875|dbj|BAG72399.1| RNA polymerase II second largest subunit [Neolitsea javanica]
gi|208609877|dbj|BAG72400.1| RNA polymerase II second largest subunit [Neolitsea sericea]
gi|208609879|dbj|BAG72401.1| RNA polymerase II second largest subunit [Neolitsea sericea]
gi|208609881|dbj|BAG72402.1| RNA polymerase II second largest subunit [Neolitsea sericea]
gi|208609883|dbj|BAG72403.1| RNA polymerase II second largest subunit [Phoebe excelsa]
gi|208609885|dbj|BAG72404.1| RNA polymerase II second largest subunit [Phoebe excelsa]
gi|208609887|dbj|BAG72405.1| RNA polymerase II second largest subunit [Phoebe excelsa]
Length = 167
Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 44/64 (68%), Positives = 56/64 (87%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G T R+++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVRIPQIGDKF+SRHG
Sbjct: 42 QGQTSRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHG 101
Query: 64 QKGT 67
QKGT
Sbjct: 102 QKGT 105
>gi|47156743|gb|AAT12268.1| RNA polymerase II second largest subunit [Diapensia lapponica]
Length = 530
Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 46/63 (73%), Positives = 54/63 (85%)
Query: 5 GTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQ 64
G R++KRD ST LR+SETG+VDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHGQ
Sbjct: 368 GPGGRYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQ 427
Query: 65 KGT 67
KGT
Sbjct: 428 KGT 430
>gi|208609729|dbj|BAG72326.1| RNA polymerase II second largest subunit [Lindera erythrocarpa]
Length = 167
Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 44/64 (68%), Positives = 56/64 (87%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G T R+++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVRIPQIGDKF+SRHG
Sbjct: 42 QGQTSRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHG 101
Query: 64 QKGT 67
QKGT
Sbjct: 102 QKGT 105
>gi|208609843|dbj|BAG72383.1| RNA polymerase II second largest subunit [Litsea resinosa]
Length = 167
Score = 97.4 bits (241), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 44/64 (68%), Positives = 56/64 (87%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G T R+++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVRIPQIGDKF+SRHG
Sbjct: 42 QGQTSRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHG 101
Query: 64 QKGT 67
QKGT
Sbjct: 102 QKGT 105
>gi|208609869|dbj|BAG72396.1| RNA polymerase II second largest subunit [Neolitsea cassia]
Length = 167
Score = 97.4 bits (241), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 44/64 (68%), Positives = 56/64 (87%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G T R+++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVRIPQIGDKF+SRHG
Sbjct: 42 QGQTSRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHG 101
Query: 64 QKGT 67
QKGT
Sbjct: 102 QKGT 105
>gi|40644549|emb|CAD89106.1| RNA polymerase II, second largest subunit [Tephrosia purpurea]
Length = 550
Score = 97.4 bits (241), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 45/64 (70%), Positives = 54/64 (84%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R+++RD S LR+SETGIVDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 370 QGQASRYTRRDHSISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 429
Query: 64 QKGT 67
QKGT
Sbjct: 430 QKGT 433
>gi|56694376|gb|AAW22928.1| RNA polymerase II second largest subunit [Acorus gramineus]
Length = 536
Score = 97.4 bits (241), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 44/64 (68%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R++KRD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVRIPQIGDKF+SRHG
Sbjct: 377 QGQASRYTKRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHG 436
Query: 64 QKGT 67
QKGT
Sbjct: 437 QKGT 440
>gi|68300812|gb|AAY89347.1| RNA polymerase II second largest subunit [Petunia x hybrida]
Length = 1195
Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/64 (68%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R++++D ST LR+SETG+VDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 890 QGQASRYTRKDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 949
Query: 64 QKGT 67
QKGT
Sbjct: 950 QKGT 953
>gi|40643048|emb|CAD92466.1| RNA polymerase II [Cuscuta sp. Stefanovic s.n.]
Length = 222
Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/64 (70%), Positives = 54/64 (84%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R++KRD ST LR+SE G+VDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 101 QGQAARYTKRDHSTSLRHSENGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 160
Query: 64 QKGT 67
QKGT
Sbjct: 161 QKGT 164
>gi|68300810|gb|AAY89346.1| RNA polymerase II second largest subunit [Nicotiana sylvestris]
Length = 1087
Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/64 (68%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R++++D ST LR+SETG+VDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 789 QGQASRYTRKDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 848
Query: 64 QKGT 67
QKGT
Sbjct: 849 QKGT 852
>gi|350534526|ref|NP_001233889.1| DNA-directed RNA polymerase II subunit RPB2 [Solanum lycopersicum]
gi|11134656|sp|Q42877.1|RPB2_SOLLC RecName: Full=DNA-directed RNA polymerase II subunit RPB2;
Short=RNA polymerase II subunit 2; Short=RNA polymerase
II subunit B2; AltName: Full=DNA-directed RNA polymerase
II 135 kDa polypeptide
gi|1049068|gb|AAC49273.1| RNA polymerase II subunit 2 [Solanum lycopersicum]
Length = 1191
Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/64 (68%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R++++D ST LR+SETG+VDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 886 QGQASRYTRKDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 945
Query: 64 QKGT 67
QKGT
Sbjct: 946 QKGT 949
>gi|68131836|gb|AAY85196.1| RNA polymerase II second largest subunit [Chimonanthus praecox]
Length = 906
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 56/64 (87%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G T R+++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVR+PQIGDKF+SRHG
Sbjct: 781 QGQTSRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRVPQIGDKFSSRHG 840
Query: 64 QKGT 67
QKGT
Sbjct: 841 QKGT 844
>gi|4867876|emb|CAB43078.1| RNA polymerase II [Ophiorrhiza mungos]
Length = 263
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/61 (73%), Positives = 54/61 (88%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
+ R++KRD ST LR+SETG+VDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHGQKG
Sbjct: 16 SNRYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKG 75
Query: 67 T 67
T
Sbjct: 76 T 76
>gi|449433841|ref|XP_004134705.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
[Cucumis sativus]
gi|449479313|ref|XP_004155566.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
[Cucumis sativus]
Length = 1199
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/64 (70%), Positives = 53/64 (82%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R+S+RD S LR+SE GIVDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 894 QGQAARYSRRDHSISLRHSENGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 953
Query: 64 QKGT 67
QKGT
Sbjct: 954 QKGT 957
>gi|56694364|gb|AAW22922.1| RNA polymerase II second largest subunit [Amborella trichopoda]
Length = 516
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/65 (66%), Positives = 56/65 (86%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
++G R+++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVRIPQIGDKF+SRH
Sbjct: 343 MQGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRH 402
Query: 63 GQKGT 67
GQKGT
Sbjct: 403 GQKGT 407
>gi|46277289|gb|AAS86835.1| RNA polymerase II second largest subunit, partial [Camellia
japonica]
Length = 591
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 56/64 (87%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G + R+++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVRIPQIGDKF+SRHG
Sbjct: 390 QGPSSRYTRRDHSTALRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHG 449
Query: 64 QKGT 67
QKGT
Sbjct: 450 QKGT 453
>gi|4867858|emb|CAB43085.1| RNA polymerase II [Stephanotis floribunda]
Length = 261
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/62 (72%), Positives = 54/62 (87%)
Query: 6 TTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQK 65
++ R++KRD ST LR+SE GIVDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHGQK
Sbjct: 14 SSSRYTKRDHSTSLRHSENGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQK 73
Query: 66 GT 67
GT
Sbjct: 74 GT 75
>gi|356530409|ref|XP_003533774.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
[Glycine max]
Length = 1192
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/64 (70%), Positives = 54/64 (84%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R+++RD S LR+SETGIVDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 889 QGQALRYTRRDHSISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 948
Query: 64 QKGT 67
QKGT
Sbjct: 949 QKGT 952
>gi|46277249|gb|AAS86815.1| RNA polymerase II second largest subunit, partial [Selaginella
densa]
Length = 547
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/61 (72%), Positives = 54/61 (88%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
+R++KRD ST LR+SE+G+VDQV+LT N DG +F KIRVRS+RIPQIGDKF+SRHGQKG
Sbjct: 372 AQRYTKRDQSTSLRHSESGMVDQVLLTTNADGLRFVKIRVRSIRIPQIGDKFSSRHGQKG 431
Query: 67 T 67
T
Sbjct: 432 T 432
>gi|40644651|emb|CAD90165.1| DNA-directed RNA polymerase II largest subunit [Mimulus guttatus]
Length = 179
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/64 (70%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G + RF+ +D ST LR+SE+GIVDQV+LT N DG +F KIR+RSVRIPQIGDKF+SRHG
Sbjct: 10 QGKSARFTNKDHSTSLRHSESGIVDQVLLTTNADGLRFVKIRMRSVRIPQIGDKFSSRHG 69
Query: 64 QKGT 67
QKGT
Sbjct: 70 QKGT 73
>gi|40644726|emb|CAD92665.1| RNA polymerase II [Mimulus guttatus]
Length = 629
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/59 (76%), Positives = 53/59 (89%)
Query: 9 RFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
R++KRD ST LR+SETG+VDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHGQKGT
Sbjct: 377 RYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGT 435
>gi|356558375|ref|XP_003547482.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
[Glycine max]
Length = 1193
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/64 (70%), Positives = 54/64 (84%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R+++RD S LR+SETGIVDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 889 QGQALRYTRRDHSISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 948
Query: 64 QKGT 67
QKGT
Sbjct: 949 QKGT 952
>gi|222625458|gb|EEE59590.1| hypothetical protein OsJ_11898 [Oryza sativa Japonica Group]
Length = 1218
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/64 (68%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R++KRD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVRIPQIGDKF+SRHG
Sbjct: 915 QGQATRYTKRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHG 974
Query: 64 QKGT 67
QKGT
Sbjct: 975 QKGT 978
>gi|56675892|emb|CAD89518.2| RNA polymerase II second largest subunit [Tephrosia purpurea]
Length = 423
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/64 (70%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G + R+++RD S LR+SETGIVDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 268 QGQSLRYTRRDHSISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 327
Query: 64 QKGT 67
QKGT
Sbjct: 328 QKGT 331
>gi|2736125|gb|AAB94063.1| RPB140 [Ginkgo biloba]
Length = 555
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/63 (71%), Positives = 54/63 (85%)
Query: 5 GTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQ 64
G R++KRD ST LR+SE+G+VDQV+LT N DG +F KIR+RSVRIPQIGDKF+SRHGQ
Sbjct: 378 GQVARYTKRDQSTSLRHSESGMVDQVLLTTNADGLRFVKIRMRSVRIPQIGDKFSSRHGQ 437
Query: 65 KGT 67
KGT
Sbjct: 438 KGT 440
>gi|330796313|ref|XP_003286212.1| RNA polymerase II core subunit [Dictyostelium purpureum]
gi|325083799|gb|EGC37242.1| RNA polymerase II core subunit [Dictyostelium purpureum]
Length = 1169
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/61 (72%), Positives = 55/61 (90%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+R +KRD ST LR+SE GIVDQV+LT + +G+KFCK+RVRS+R+PQIGDKF+SRHGQKG
Sbjct: 882 TRRHTKRDSSTALRSSENGIVDQVILTTSGEGFKFCKVRVRSMRVPQIGDKFSSRHGQKG 941
Query: 67 T 67
T
Sbjct: 942 T 942
>gi|56694366|gb|AAW22923.1| RNA polymerase II second largest subunit [Trimenia moorei]
Length = 531
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
EG R+++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVR+PQIGDKF+SRHG
Sbjct: 369 EGQPSRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRVPQIGDKFSSRHG 428
Query: 64 QKGT 67
QKGT
Sbjct: 429 QKGT 432
>gi|15234572|ref|NP_193902.1| DNA-directed RNA polymerase II subunit RPB2 [Arabidopsis thaliana]
gi|21542437|sp|P38420.2|RPB2_ARATH RecName: Full=DNA-directed RNA polymerase II subunit RPB2;
Short=RNA polymerase II subunit 2; Short=RNA polymerase
II subunit B2; AltName: Full=DNA-directed RNA polymerase
II 135 kDa polypeptide; AltName: Full=Protein EMBRYO
DEFECTIVE 1989
gi|4455279|emb|CAB36815.1| DNA-directed RNA polymerase (EC 2.7.7.6) II second largest chain
[Arabidopsis thaliana]
gi|7268968|emb|CAB81278.1| DNA-directed RNA polymerase (EC 2.7.7.6) II second largest chain
[Arabidopsis thaliana]
gi|332659093|gb|AEE84493.1| DNA-directed RNA polymerase II subunit RPB2 [Arabidopsis thaliana]
Length = 1188
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/64 (68%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G + R+++RD S LR+SETG+VDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 887 QGQSSRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 946
Query: 64 QKGT 67
QKGT
Sbjct: 947 QKGT 950
>gi|297799890|ref|XP_002867829.1| hypothetical protein ARALYDRAFT_492703 [Arabidopsis lyrata subsp.
lyrata]
gi|297313665|gb|EFH44088.1| hypothetical protein ARALYDRAFT_492703 [Arabidopsis lyrata subsp.
lyrata]
Length = 1188
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/64 (68%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G + R+++RD S LR+SETG+VDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 887 QGQSSRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 946
Query: 64 QKGT 67
QKGT
Sbjct: 947 QKGT 950
>gi|40644582|emb|CAD89877.1| RNA polymerase II, second largest subunit [Philadelphus sp. Oxelman
2326]
Length = 320
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/59 (76%), Positives = 53/59 (89%)
Query: 9 RFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
R++KRD ST LR+SETG+VDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHGQKGT
Sbjct: 156 RYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGT 214
>gi|16488|emb|CAA79527.1| RNA polymerase II second largest subunit [Arabidopsis thaliana]
Length = 1188
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/64 (68%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G + R+++RD S LR+SETG+VDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 887 QGQSSRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 946
Query: 64 QKGT 67
QKGT
Sbjct: 947 QKGT 950
>gi|16486|emb|CAA79528.1| RNA polymerase II second largest subunit [Arabidopsis thaliana]
Length = 1188
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/64 (68%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G + R+++RD S LR+SETG+VDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 887 QGQSSRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 946
Query: 64 QKGT 67
QKGT
Sbjct: 947 QKGT 950
>gi|50058763|gb|AAT69134.1| RNA polymerase II [Nicotiana tabacum]
Length = 216
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/64 (68%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R++++D ST LR+SETG+VDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 91 QGQASRYTRKDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 150
Query: 64 QKGT 67
QKGT
Sbjct: 151 QKGT 154
>gi|68131876|gb|AAY85216.1| RNA polymerase II second largest subunit [Hibbertia scandens]
Length = 873
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 56/64 (87%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G + R+++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVRIPQIGDKF+SRHG
Sbjct: 782 QGVSSRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHG 841
Query: 64 QKGT 67
QKGT
Sbjct: 842 QKGT 845
>gi|68131852|gb|AAY85204.1| RNA polymerase II second largest subunit [Dillenia suffruticosa]
Length = 868
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 56/64 (87%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G + R+++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVRIPQIGDKF+SRHG
Sbjct: 777 QGVSSRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHG 836
Query: 64 QKGT 67
QKGT
Sbjct: 837 QKGT 840
>gi|2736127|gb|AAB94064.1| RPB140 [Marchantia polymorpha]
Length = 555
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/61 (70%), Positives = 54/61 (88%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
+R++KRD ST LR+SE+G++DQV+LT N DG +F KIRVRS+RIPQIGDKF+SRHGQKG
Sbjct: 380 AQRYTKRDQSTCLRHSESGMIDQVLLTTNADGLRFVKIRVRSIRIPQIGDKFSSRHGQKG 439
Query: 67 T 67
T
Sbjct: 440 T 440
>gi|50058721|gb|AAT69113.1| RNA polymerase II [Tetralocularia pennellii]
Length = 183
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/64 (70%), Positives = 54/64 (84%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G ++KRD ST LR+SETG+VDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 81 QGQASHYTKRDRSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 140
Query: 64 QKGT 67
QKGT
Sbjct: 141 QKGT 144
>gi|46277251|gb|AAS86816.1| RNA polymerase II second largest subunit, partial [Cycas revoluta]
Length = 567
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/63 (69%), Positives = 54/63 (85%)
Query: 5 GTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQ 64
G R++KRD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVRIPQIGDKF+SRHGQ
Sbjct: 372 GQAARYTKRDQSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQ 431
Query: 65 KGT 67
KGT
Sbjct: 432 KGT 434
>gi|56694334|gb|AAW22907.1| RNA polymerase II second largest subunit [Araucaria araucana]
Length = 523
Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/63 (73%), Positives = 54/63 (85%)
Query: 5 GTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQ 64
G RFS+RD ST LR+SE+G+VDQV+LT N DG +F KIR+RSVRIPQIGDKF+SRHGQ
Sbjct: 346 GQLSRFSRRDQSTSLRHSESGMVDQVLLTTNQDGLRFVKIRMRSVRIPQIGDKFSSRHGQ 405
Query: 65 KGT 67
KGT
Sbjct: 406 KGT 408
>gi|70794968|gb|AAZ08458.1| RNA polymerase II second largest subunit [Rhododendron
macrophyllum]
Length = 1207
Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 56/64 (87%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G T R+++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RS+RIPQIGDKF+SRHG
Sbjct: 904 QGQTARYTRRDHSTCLRHSESGMVDQVLLTTNADGLRFVKMRMRSIRIPQIGDKFSSRHG 963
Query: 64 QKGT 67
QKGT
Sbjct: 964 QKGT 967
>gi|56694290|gb|AAW22885.1| RNA polymerase II second largest subunit [Equisetum hyemale]
Length = 539
Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/63 (69%), Positives = 54/63 (85%)
Query: 5 GTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQ 64
G +R++KRD ST LR+SE+G++DQV+LT N DG +F KIRVRSVRIPQIGDKF+SRHGQ
Sbjct: 371 GQVQRYTKRDQSTCLRHSESGMIDQVLLTTNADGLRFVKIRVRSVRIPQIGDKFSSRHGQ 430
Query: 65 KGT 67
GT
Sbjct: 431 XGT 433
>gi|68131858|gb|AAY85207.1| RNA polymerase II second largest subunit [Embothrium coccineum]
Length = 114
Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R+++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVRIPQIGDKF+SRHG
Sbjct: 23 QGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHG 82
Query: 64 QKGT 67
QKGT
Sbjct: 83 QKGT 86
>gi|56694296|gb|AAW22888.1| RNA polymerase II second largest subunit [Psilotum nudum]
Length = 573
Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/61 (70%), Positives = 53/61 (86%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
+R+SKRD ST LR SE+G++DQV+LT N DG +F KIRVRS+R+PQIGDKF+SRHGQKG
Sbjct: 380 AQRYSKRDQSTCLRXSESGMIDQVLLTTNADGLRFVKIRVRSIRVPQIGDKFSSRHGQKG 439
Query: 67 T 67
T
Sbjct: 440 T 440
>gi|68131890|gb|AAY85223.1| RNA polymerase II second largest subunit [Nelumbo nucifera]
Length = 865
Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 56/64 (87%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G + R+++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVRIPQIGDKF+SRHG
Sbjct: 774 QGQSSRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHG 833
Query: 64 QKGT 67
QKGT
Sbjct: 834 QKGT 837
>gi|4867807|emb|CAB43064.1| RNA polymerase II [Chiococca alba]
Length = 267
Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/59 (76%), Positives = 53/59 (89%)
Query: 9 RFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
R++KRD ST LR+SETG+VDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHGQKGT
Sbjct: 17 RYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGT 75
>gi|208609715|dbj|BAG72319.1| RNA polymerase II second largest subunit [Actinodaphne malaccensis]
Length = 167
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/64 (68%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G T R+++RD ST LR+SE G+VDQV+LT N DG +F K+R+RSVRIPQIGDKF+SRHG
Sbjct: 42 QGQTSRYTRRDHSTSLRHSEIGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHG 101
Query: 64 QKGT 67
QKGT
Sbjct: 102 QKGT 105
>gi|152968498|gb|ABS50263.1| RNA polymerase II [Silene abyssinica]
gi|152968543|gb|ABS50286.1| RNA polymerase II [Uebelinia scottii]
Length = 255
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/64 (68%), Positives = 54/64 (84%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R+S++D S LR+SE+GIVDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 130 QGPAARYSRKDHSISLRHSESGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 189
Query: 64 QKGT 67
QKGT
Sbjct: 190 QKGT 193
>gi|152968518|gb|ABS50273.1| RNA polymerase II [Uebelinia crassifolia]
gi|152968522|gb|ABS50275.1| RNA polymerase II [Uebelinia kiwuensis subsp. erlangeriana]
gi|152968536|gb|ABS50282.1| RNA polymerase II [Uebelinia kiwuensis]
gi|152968538|gb|ABS50283.1| RNA polymerase II [Uebelinia kiwuensis]
Length = 255
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/64 (68%), Positives = 54/64 (84%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R+S++D S LR+SE+GIVDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 130 QGPAARYSRKDHSISLRHSESGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 189
Query: 64 QKGT 67
QKGT
Sbjct: 190 QKGT 193
>gi|56694332|gb|AAW22906.1| RNA polymerase II second largest subunit [Agathis australis]
Length = 514
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/63 (73%), Positives = 54/63 (85%)
Query: 5 GTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQ 64
G RFS+RD ST LR+SE+G+VDQV+LT N DG +F KIR+RSVRIPQIGDKF+SRHGQ
Sbjct: 346 GQLSRFSRRDQSTSLRHSESGMVDQVLLTTNQDGLRFVKIRMRSVRIPQIGDKFSSRHGQ 405
Query: 65 KGT 67
KGT
Sbjct: 406 KGT 408
>gi|68131848|gb|AAY85202.1| RNA polymerase II second largest subunit [Dianthus caryophyllus]
Length = 674
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/64 (68%), Positives = 54/64 (84%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R+S++D S LR+SE+GIVDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 505 QGPAARYSRKDHSISLRHSESGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 564
Query: 64 QKGT 67
QKGT
Sbjct: 565 QKGT 568
>gi|152968532|gb|ABS50280.1| RNA polymerase II [Uebelinia kiwuensis]
Length = 247
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/64 (68%), Positives = 54/64 (84%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R+S++D S LR+SE+GIVDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 130 QGPAARYSRKDHSISLRHSESGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 189
Query: 64 QKGT 67
QKGT
Sbjct: 190 QKGT 193
>gi|168027816|ref|XP_001766425.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162682334|gb|EDQ68753.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1185
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/61 (70%), Positives = 54/61 (88%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
+R++KRD ST LR+SE+G++DQV+LT N DG +F KIRVRS+RIPQIGDKF+SRHGQKG
Sbjct: 882 AQRYTKRDQSTCLRHSESGMIDQVLLTTNADGLRFVKIRVRSIRIPQIGDKFSSRHGQKG 941
Query: 67 T 67
T
Sbjct: 942 T 942
>gi|56694326|gb|AAW22903.1| RNA polymerase II second largest subunit [Dioon edule]
Length = 538
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/63 (69%), Positives = 54/63 (85%)
Query: 5 GTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQ 64
G R++KRD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVRIPQIGDKF+SRHGQ
Sbjct: 361 GQAARYTKRDQSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQ 420
Query: 65 KGT 67
KGT
Sbjct: 421 KGT 423
>gi|56694374|gb|AAW22927.1| RNA polymerase II second largest subunit [Dianthus sp. UWG]
Length = 540
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/64 (68%), Positives = 54/64 (84%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R+S++D S LR+SE+GIVDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 371 QGPAARYSRKDHSISLRHSESGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 430
Query: 64 QKGT 67
QKGT
Sbjct: 431 QKGT 434
>gi|46277283|gb|AAS86832.1| RNA polymerase II second largest subunit, partial [Rhododendron
macrophyllum]
Length = 580
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 56/64 (87%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G T R+++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RS+RIPQIGDKF+SRHG
Sbjct: 371 QGQTARYTRRDHSTCLRHSESGMVDQVLLTTNADGLRFVKMRMRSIRIPQIGDKFSSRHG 430
Query: 64 QKGT 67
QKGT
Sbjct: 431 QKGT 434
>gi|56694320|gb|AAW22900.1| RNA polymerase II second largest subunit [Microcycas calocoma]
Length = 545
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/63 (69%), Positives = 54/63 (85%)
Query: 5 GTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQ 64
G R++KRD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVRIPQIGDKF+SRHGQ
Sbjct: 375 GQAARYTKRDQSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQ 434
Query: 65 KGT 67
KGT
Sbjct: 435 KGT 437
>gi|40644720|emb|CAD92662.1| RNA polymerase II [Solanum lycopersicum]
Length = 396
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/64 (68%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R++++D ST LR+SETG+VDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 140 QGQASRYTRKDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 199
Query: 64 QKGT 67
QKGT
Sbjct: 200 QKGT 203
>gi|56694314|gb|AAW22897.1| RNA polymerase II second largest subunit [Ceratozamia miqueliana]
Length = 552
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/63 (69%), Positives = 54/63 (85%)
Query: 5 GTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQ 64
G R++KRD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVRIPQIGDKF+SRHGQ
Sbjct: 380 GQAARYTKRDQSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQ 439
Query: 65 KGT 67
KGT
Sbjct: 440 KGT 442
>gi|302780123|ref|XP_002971836.1| hypothetical protein SELMODRAFT_148107 [Selaginella moellendorffii]
gi|300160135|gb|EFJ26753.1| hypothetical protein SELMODRAFT_148107 [Selaginella moellendorffii]
Length = 1178
Score = 96.7 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 43/60 (71%), Positives = 53/60 (88%)
Query: 8 KRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
+R+SKRD ST LR+SE+G++DQV+LT N DG +F K RVRS+RIPQIGDKF+SRHGQKGT
Sbjct: 878 QRYSKRDQSTCLRHSESGMIDQVLLTTNADGLRFVKTRVRSIRIPQIGDKFSSRHGQKGT 937
>gi|302781178|ref|XP_002972363.1| hypothetical protein SELMODRAFT_172903 [Selaginella moellendorffii]
gi|300159830|gb|EFJ26449.1| hypothetical protein SELMODRAFT_172903 [Selaginella moellendorffii]
Length = 1178
Score = 96.7 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 43/60 (71%), Positives = 53/60 (88%)
Query: 8 KRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
+R+SKRD ST LR+SE+G++DQV+LT N DG +F K RVRS+RIPQIGDKF+SRHGQKGT
Sbjct: 878 QRYSKRDQSTCLRHSESGMIDQVLLTTNADGLRFVKTRVRSIRIPQIGDKFSSRHGQKGT 937
>gi|152968502|gb|ABS50265.1| RNA polymerase II [Silene abyssinica]
Length = 266
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/64 (68%), Positives = 54/64 (84%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R+S++D S LR+SE+GIVDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 125 QGPAARYSRKDHSISLRHSESGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 184
Query: 64 QKGT 67
QKGT
Sbjct: 185 QKGT 188
>gi|56694316|gb|AAW22898.1| RNA polymerase II second largest subunit [Encephalartos barteri]
Length = 527
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/63 (69%), Positives = 54/63 (85%)
Query: 5 GTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQ 64
G R++KRD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVRIPQIGDKF+SRHGQ
Sbjct: 359 GQAARYTKRDQSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQ 418
Query: 65 KGT 67
KGT
Sbjct: 419 KGT 421
>gi|208609767|dbj|BAG72345.1| RNA polymerase II second largest subunit [Litsea caulocarpa]
Length = 167
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 56/64 (87%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G T R+++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVRIPQ+GDKF+SRHG
Sbjct: 42 QGQTSRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQMGDKFSSRHG 101
Query: 64 QKGT 67
QKGT
Sbjct: 102 QKGT 105
>gi|152968500|gb|ABS50264.1| RNA polymerase II [Silene abyssinica]
Length = 271
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/64 (68%), Positives = 54/64 (84%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R+S++D S LR+SE+GIVDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 130 QGPAARYSRKDHSISLRHSESGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 189
Query: 64 QKGT 67
QKGT
Sbjct: 190 QKGT 193
>gi|56675685|emb|CAB43065.2| RNA polymerase II [Fagraea sp. Bremer 900109]
Length = 258
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/59 (76%), Positives = 53/59 (89%)
Query: 9 RFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
R++KRD ST LR+SETG+VDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHGQKGT
Sbjct: 15 RYTKRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGT 73
>gi|152968520|gb|ABS50274.1| RNA polymerase II [Uebelinia kiwuensis subsp. erlangeriana]
gi|152968524|gb|ABS50276.1| RNA polymerase II [Uebelinia kiwuensis subsp. erlangeriana]
gi|152968534|gb|ABS50281.1| RNA polymerase II [Uebelinia kiwuensis]
Length = 271
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/64 (68%), Positives = 54/64 (84%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R+S++D S LR+SE+GIVDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 130 QGPAARYSRKDHSISLRHSESGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 189
Query: 64 QKGT 67
QKGT
Sbjct: 190 QKGT 193
>gi|152968496|gb|ABS50262.1| RNA polymerase II [Silene abyssinica]
gi|152968504|gb|ABS50266.1| RNA polymerase II [Silene abyssinica]
gi|152968508|gb|ABS50268.1| RNA polymerase II [Silene abyssinica]
gi|152968510|gb|ABS50269.1| RNA polymerase II [Silene abyssinica]
gi|152968512|gb|ABS50270.1| RNA polymerase II [Silene abyssinica]
gi|152968514|gb|ABS50271.1| RNA polymerase II [Silene abyssinica]
gi|152968526|gb|ABS50277.1| RNA polymerase II [Uebelinia kigesiensis subsp. kigesiensis]
gi|152968528|gb|ABS50278.1| RNA polymerase II [Uebelinia kigesiensis subsp. ragazziana]
gi|152968530|gb|ABS50279.1| RNA polymerase II [Uebelinia kigesiensis subsp. ragazziana]
Length = 271
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/64 (68%), Positives = 54/64 (84%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R+S++D S LR+SE+GIVDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 130 QGPAARYSRKDHSISLRHSESGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 189
Query: 64 QKGT 67
QKGT
Sbjct: 190 QKGT 193
>gi|56694322|gb|AAW22901.1| RNA polymerase II second largest subunit [Stangeria eriopus]
Length = 538
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/63 (69%), Positives = 54/63 (85%)
Query: 5 GTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQ 64
G R++KRD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVRIPQIGDKF+SRHGQ
Sbjct: 361 GQAARYTKRDQSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQ 420
Query: 65 KGT 67
KGT
Sbjct: 421 KGT 423
>gi|67810752|gb|AAY82003.1| RNA polymerase II second largest subunit [Psilotum nudum]
Length = 614
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/61 (70%), Positives = 53/61 (86%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
+R+SKRD ST LR SE+G++DQV+LT N DG +F KIRVRS+R+PQIGDKF+SRHGQKG
Sbjct: 380 AQRYSKRDQSTCLRXSESGMIDQVLLTTNADGLRFVKIRVRSIRVPQIGDKFSSRHGQKG 439
Query: 67 T 67
T
Sbjct: 440 T 440
>gi|152968516|gb|ABS50272.1| RNA polymerase II [Silene abyssinica]
Length = 267
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/64 (68%), Positives = 54/64 (84%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R+S++D S LR+SE+GIVDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 130 QGPAARYSRKDHSISLRHSESGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 189
Query: 64 QKGT 67
QKGT
Sbjct: 190 QKGT 193
>gi|3746594|gb|AAC64012.1| RNA polymerase II subunit 2 [Periploca graeca]
Length = 260
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/61 (73%), Positives = 53/61 (86%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
+ R++KRD ST LR+SE GIVDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHGQKG
Sbjct: 15 SARYTKRDHSTSLRHSENGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKG 74
Query: 67 T 67
T
Sbjct: 75 T 75
>gi|224077112|ref|XP_002305137.1| predicted protein [Populus trichocarpa]
gi|222848101|gb|EEE85648.1| predicted protein [Populus trichocarpa]
Length = 421
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/64 (68%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G + R+++RD S LR+SETG+VDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 116 QGQSARYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 175
Query: 64 QKGT 67
QKGT
Sbjct: 176 QKGT 179
>gi|152968506|gb|ABS50267.1| RNA polymerase II [Silene abyssinica]
Length = 240
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/64 (68%), Positives = 54/64 (84%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R+S++D S LR+SE+GIVDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 115 QGPAARYSRKDHSISLRHSESGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 174
Query: 64 QKGT 67
QKGT
Sbjct: 175 QKGT 178
>gi|4867795|emb|CAB43060.1| RNA polymerase II [Alstonia scholaris]
Length = 258
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/61 (73%), Positives = 53/61 (86%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
+ R++KRD ST LR+SE GIVDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHGQKG
Sbjct: 13 SARYTKRDHSTSLRHSENGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKG 72
Query: 67 T 67
T
Sbjct: 73 T 73
>gi|68131850|gb|AAY85203.1| RNA polymerase II second largest subunit [Dicentra formosa]
Length = 873
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R+++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVRIPQIGDKF+SRHG
Sbjct: 782 QGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHG 841
Query: 64 QKGT 67
QKGT
Sbjct: 842 QKGT 845
>gi|68131824|gb|AAY85190.1| RNA polymerase II second largest subunit [Aextoxicon punctatum]
Length = 873
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R+++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVRIPQIGDKF+SRHG
Sbjct: 782 QGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHG 841
Query: 64 QKGT 67
QKGT
Sbjct: 842 QKGT 845
>gi|46277267|gb|AAS86824.1| RNA polymerase II second largest subunit, partial [Eschscholzia
californica]
Length = 559
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R+++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVRIPQIGDKF+SRHG
Sbjct: 390 QGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHG 449
Query: 64 QKGT 67
QKGT
Sbjct: 450 QKGT 453
>gi|70794972|gb|AAZ08460.1| RNA polymerase II second largest subunit [Eschscholzia californica]
Length = 951
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R+++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVRIPQIGDKF+SRHG
Sbjct: 782 QGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHG 841
Query: 64 QKGT 67
QKGT
Sbjct: 842 QKGT 845
>gi|4867897|emb|CAB43086.1| RNA polymerase II [Strychnos potatorum]
Length = 263
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/59 (76%), Positives = 52/59 (88%)
Query: 9 RFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
R++KRD ST LR+SE GIVDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHGQKGT
Sbjct: 17 RYTKRDHSTSLRHSENGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGT 75
>gi|2736121|gb|AAB94061.1| RPB140 [Magnolia virginiana]
Length = 555
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/65 (66%), Positives = 56/65 (86%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
++G R+++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVRIPQIGDKF+SRH
Sbjct: 376 VQGQVTRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRH 435
Query: 63 GQKGT 67
GQKGT
Sbjct: 436 GQKGT 440
>gi|46277269|gb|AAS86825.1| RNA polymerase II second largest subunit, partial [Platanus
orientalis]
Length = 536
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R+++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVRIPQIGDKF+SRHG
Sbjct: 367 QGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHG 426
Query: 64 QKGT 67
QKGT
Sbjct: 427 QKGT 430
>gi|225446351|ref|XP_002274051.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Vitis
vinifera]
gi|147841183|emb|CAN72948.1| hypothetical protein VITISV_033708 [Vitis vinifera]
gi|302143287|emb|CBI21848.3| unnamed protein product [Vitis vinifera]
Length = 1193
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R+++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVRIPQIGDKF+SRHG
Sbjct: 888 QGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHG 947
Query: 64 QKGT 67
QKGT
Sbjct: 948 QKGT 951
>gi|68300794|gb|AAY89340.1| RNA polymerase II second largest subunit [Berberidopsis beckleri]
Length = 873
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R+++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVRIPQIGDKF+SRHG
Sbjct: 782 QGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHG 841
Query: 64 QKGT 67
QKGT
Sbjct: 842 QKGT 845
>gi|46277259|gb|AAS86820.1| RNA polymerase II second largest subunit, partial [Trochodendron
aralioides]
Length = 547
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R+++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVRIPQIGDKF+SRHG
Sbjct: 369 QGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHG 428
Query: 64 QKGT 67
QKGT
Sbjct: 429 QKGT 432
>gi|68300792|gb|AAY89339.1| RNA polymerase II second largest subunit [Berberidopsis corallina]
Length = 853
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R+++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVRIPQIGDKF+SRHG
Sbjct: 762 QGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHG 821
Query: 64 QKGT 67
QKGT
Sbjct: 822 QKGT 825
>gi|68131916|gb|AAY85236.1| RNA polymerase II second largest subunit [Vitis piasezkii]
Length = 951
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R+++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVRIPQIGDKF+SRHG
Sbjct: 782 QGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHG 841
Query: 64 QKGT 67
QKGT
Sbjct: 842 QKGT 845
>gi|46277281|gb|AAS86831.1| RNA polymerase II second largest subunit, partial [Arceuthobium
campylopodum]
Length = 584
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/59 (74%), Positives = 52/59 (88%)
Query: 9 RFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
R++KRD ST LR+SE G+VDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHGQKGT
Sbjct: 420 RYTKRDHSTSLRHSENGVVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGT 478
>gi|3002941|gb|AAC08961.1| RNA polymerase II second largest subunit [Nymphaea odorata]
Length = 555
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R+++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVRIPQIGDKF+SRHG
Sbjct: 377 QGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHG 436
Query: 64 QKGT 67
QKGT
Sbjct: 437 QKGT 440
>gi|70794976|gb|AAZ08462.1| RNA polymerase II second largest subunit [Platanus orientalis]
Length = 923
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R+++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVRIPQIGDKF+SRHG
Sbjct: 754 QGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHG 813
Query: 64 QKGT 67
QKGT
Sbjct: 814 QKGT 817
>gi|56694378|gb|AAW22929.1| RNA polymerase II second largest subunit [Musa velutina]
Length = 561
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R+++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVRIPQIGDKF+SRHG
Sbjct: 365 QGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHG 424
Query: 64 QKGT 67
QKGT
Sbjct: 425 QKGT 428
>gi|70794974|gb|AAZ08461.1| RNA polymerase II second largest subunit [Liriodendron tulipifera]
Length = 942
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R+++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVRIPQIGDKF+SRHG
Sbjct: 773 QGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHG 832
Query: 64 QKGT 67
QKGT
Sbjct: 833 QKGT 836
>gi|46277261|gb|AAS86821.1| RNA polymerase II second largest subunit, partial [Akebia
longeracemosa]
Length = 575
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R+++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVRIPQIGDKF+SRHG
Sbjct: 371 QGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHG 430
Query: 64 QKGT 67
QKGT
Sbjct: 431 QKGT 434
>gi|46277257|gb|AAS86819.1| RNA polymerase II second largest subunit, partial [Dioscorea
sansibarensis]
Length = 572
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R+++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVRIPQIGDKF+SRHG
Sbjct: 369 QGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHG 428
Query: 64 QKGT 67
QKGT
Sbjct: 429 QKGT 432
>gi|115454339|ref|NP_001050770.1| Os03g0646800 [Oryza sativa Japonica Group]
gi|113549241|dbj|BAF12684.1| Os03g0646800, partial [Oryza sativa Japonica Group]
Length = 368
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/64 (68%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R++KRD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVRIPQIGDKF+SRHG
Sbjct: 65 QGQATRYTKRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHG 124
Query: 64 QKGT 67
QKGT
Sbjct: 125 QKGT 128
>gi|71841601|gb|AAZ43091.1| RNA polymerase II second largest subunit [Gunnera chilensis]
Length = 534
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R+++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVRIPQIGDKF+SRHG
Sbjct: 365 QGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHG 424
Query: 64 QKGT 67
QKGT
Sbjct: 425 QKGT 428
>gi|46277263|gb|AAS86822.1| RNA polymerase II second largest subunit, partial [Liriodendron
tulipifera]
Length = 539
Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R+++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVRIPQIGDKF+SRHG
Sbjct: 370 QGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHG 429
Query: 64 QKGT 67
QKGT
Sbjct: 430 QKGT 433
>gi|40644998|emb|CAD89358.1| RNA polymerase II, second largest subunit [Vitis piasezkii]
Length = 551
Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R+++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVRIPQIGDKF+SRHG
Sbjct: 373 QGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHG 432
Query: 64 QKGT 67
QKGT
Sbjct: 433 QKGT 436
>gi|68131842|gb|AAY85199.1| RNA polymerase II second largest subunit [Cissus tuberosa]
Length = 951
Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R+++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVRIPQIGDKF+SRHG
Sbjct: 782 QGQPSRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHG 841
Query: 64 QKGT 67
QKGT
Sbjct: 842 QKGT 845
>gi|4867862|emb|CAB43072.1| RNA polymerase II [Logania vaginalis]
Length = 262
Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/59 (76%), Positives = 52/59 (88%)
Query: 9 RFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
R++KRD ST LR+SE GIVDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHGQKGT
Sbjct: 17 RYTKRDHSTSLRHSENGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGT 75
>gi|208609873|dbj|BAG72398.1| RNA polymerase II second largest subunit [Neolitsea javanica]
Length = 167
Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/63 (68%), Positives = 55/63 (87%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G T R+++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVRIPQIGDKF+SRHG
Sbjct: 42 QGQTSRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHG 101
Query: 64 QKG 66
QKG
Sbjct: 102 QKG 104
>gi|4867899|emb|CAB43088.1| RNA polymerase II [Usteria guineensis]
Length = 268
Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/61 (73%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
R++KRD ST LR+SE GIVDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHGQKG
Sbjct: 14 ASRYTKRDHSTSLRHSENGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKG 73
Query: 67 T 67
T
Sbjct: 74 T 74
>gi|3002939|gb|AAC08960.1| RNA polymerase II second largest subunit [Peperomia caperata]
Length = 554
Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R+++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVRIPQIGDKF+SRHG
Sbjct: 376 QGQASRYNRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHG 435
Query: 64 QKGT 67
QKGT
Sbjct: 436 QKGT 439
>gi|4867866|emb|CAB43074.1| RNA polymerase II [Mitreola petiolata]
Length = 261
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/61 (73%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
R++KRD ST LR+SE GIVDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHGQKG
Sbjct: 14 ASRYTKRDHSTSLRHSENGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKG 73
Query: 67 T 67
T
Sbjct: 74 T 74
>gi|50058741|gb|AAT69123.1| RNA polymerase II [Jacquemontia tamnifolia]
Length = 215
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/64 (70%), Positives = 53/64 (82%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R++KRD T LR+SETG+VDQV LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 96 QGQAARYTKRDHXTSLRHSETGMVDQVPLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 155
Query: 64 QKGT 67
QKGT
Sbjct: 156 QKGT 159
>gi|56694370|gb|AAW22925.1| RNA polymerase II second largest subunit [Asarum caudatum]
Length = 565
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 42/64 (65%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R+++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVR+PQIGDKF+SRHG
Sbjct: 369 QGQASRYTRRDHSTALRHSESGMVDQVLLTTNADGLRFVKVRMRSVRVPQIGDKFSSRHG 428
Query: 64 QKGT 67
QKGT
Sbjct: 429 QKGT 432
>gi|40643994|emb|CAD90166.1| DNA-directed RNA polymerase II largest subunit [Gardenia sp.
Oxelman 2319]
Length = 627
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 44/64 (68%), Positives = 54/64 (84%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R+++RD ST LR+SE+GIVDQV LT N DG +F K+R+RSVRIPQIGDKF+SRHG
Sbjct: 372 QGQASRYTRRDHSTSLRHSESGIVDQVALTTNADGLRFVKVRMRSVRIPQIGDKFSSRHG 431
Query: 64 QKGT 67
QKGT
Sbjct: 432 QKGT 435
>gi|3746590|gb|AAC64010.1| RNA polymerase II subunit 2 [Kopsia fruticosa]
Length = 269
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 44/62 (70%), Positives = 54/62 (87%)
Query: 6 TTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQK 65
++ R++KRD ST LR+SE GIVDQV+LT N DG +F K+RVRSVRIPQIGDKF+S+HGQK
Sbjct: 14 SSARYTKRDHSTSLRHSENGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSKHGQK 73
Query: 66 GT 67
GT
Sbjct: 74 GT 75
>gi|208609859|dbj|BAG72391.1| RNA polymerase II second largest subunit [Machilus rimosa]
Length = 167
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 56/64 (87%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G T R+++RD ST LR+SE+G+V+QV+LT N DG +F K+R+RSVRIPQIGDKF+SRHG
Sbjct: 42 QGQTSRYTRRDHSTSLRHSESGMVNQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHG 101
Query: 64 QKGT 67
QKGT
Sbjct: 102 QKGT 105
>gi|120561251|gb|ABM27010.1| RNA polymerase II second largest subunit, partial [Basidiobolus
ranarum]
Length = 883
Score = 95.9 bits (237), Expect = 3e-18, Method: Composition-based stats.
Identities = 45/61 (73%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK SKRD ST LR++E GIVDQVMLT N +G KF K+RVRS R+PQ+GDKFASRHGQKG
Sbjct: 713 TKTHSKRDASTPLRSTENGIVDQVMLTTNQEGLKFVKVRVRSTRVPQMGDKFASRHGQKG 772
Query: 67 T 67
T
Sbjct: 773 T 773
>gi|384497209|gb|EIE87700.1| DNA-directed RNA polymerase II subunit RPB2 [Rhizopus delemar RA
99-880]
Length = 1215
Score = 95.9 bits (237), Expect = 3e-18, Method: Composition-based stats.
Identities = 45/61 (73%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T +KRD ST LR++ETGIVDQVMLT N DG KF K+RVRS R+PQ+GDKFASRHGQKG
Sbjct: 924 TTTHNKRDASTPLRSTETGIVDQVMLTTNQDGLKFVKVRVRSTRVPQMGDKFASRHGQKG 983
Query: 67 T 67
T
Sbjct: 984 T 984
>gi|40643907|emb|CAD89692.1| RNA polymerase II, second largest subunit [Escallonia sp. Oxelman
2340]
Length = 321
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 44/64 (68%), Positives = 54/64 (84%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R+++RD ST LR+SE+G VDQV+LT N DG KF K+R+RSVRIPQIGDKF+SRHG
Sbjct: 152 QGQVSRYTRRDHSTSLRHSESGTVDQVLLTTNADGLKFVKVRMRSVRIPQIGDKFSSRHG 211
Query: 64 QKGT 67
QKGT
Sbjct: 212 QKGT 215
>gi|3002819|gb|AAC08937.1| RPB140 [Chloranthus spicatus]
Length = 533
Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 42/64 (65%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R+++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVR+PQIGDKF+SRHG
Sbjct: 355 QGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRVPQIGDKFSSRHG 414
Query: 64 QKGT 67
QKGT
Sbjct: 415 QKGT 418
>gi|4867874|emb|CAB43077.1| RNA polymerase II [Oldenlandia corymbosa]
Length = 262
Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 44/59 (74%), Positives = 52/59 (88%)
Query: 9 RFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
R++KRD ST LR+SE GIVDQV+LT N DG +F K+RVRS+RIPQIGDKF+SRHGQKGT
Sbjct: 17 RYTKRDHSTSLRHSENGIVDQVLLTTNADGLRFVKVRVRSIRIPQIGDKFSSRHGQKGT 75
>gi|68131914|gb|AAY85235.1| RNA polymerase II second largest subunit [Tetracentron sinense]
Length = 951
Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 42/64 (65%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R+++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RS+RIPQIGDKF+SRHG
Sbjct: 782 QGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSIRIPQIGDKFSSRHG 841
Query: 64 QKGT 67
QKGT
Sbjct: 842 QKGT 845
>gi|56694368|gb|AAW22924.1| RNA polymerase II second largest subunit [Drimys winteri]
Length = 565
Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 42/64 (65%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R+++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVR+PQIGDKF+SRHG
Sbjct: 369 QGQASRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRVPQIGDKFSSRHG 428
Query: 64 QKGT 67
QKGT
Sbjct: 429 QKGT 432
>gi|56694300|gb|AAW22890.1| RNA polymerase II second largest subunit [Anemia phyllitidis]
Length = 549
Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 43/61 (70%), Positives = 54/61 (88%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
+R+SKRD ST LR+SE+G++DQV+LT N +G +F KIRVRS+RIPQIGDKF+SRHGQKG
Sbjct: 375 AQRYSKRDQSTCLRHSESGMIDQVLLTTNSEGLRFVKIRVRSIRIPQIGDKFSSRHGQKG 434
Query: 67 T 67
T
Sbjct: 435 T 435
>gi|68131884|gb|AAY85220.1| RNA polymerase II second largest subunit [Berberis nervosa]
Length = 540
Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 43/63 (68%), Positives = 54/63 (85%)
Query: 5 GTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQ 64
G +++KRD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVRIPQIGDKF+SRHGQ
Sbjct: 372 GVASQYTKRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQ 431
Query: 65 KGT 67
KGT
Sbjct: 432 KGT 434
>gi|47156741|gb|AAT12267.1| RNA polymerase II second largest subunit [Diapensia lapponica]
Length = 541
Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 43/63 (68%), Positives = 54/63 (85%)
Query: 5 GTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQ 64
G R+++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVRIPQIGDKF+SRHGQ
Sbjct: 373 GQNSRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQ 432
Query: 65 KGT 67
KGT
Sbjct: 433 KGT 435
>gi|56694308|gb|AAW22894.1| RNA polymerase II second largest subunit [Marsilea quadrifolia]
Length = 539
Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 43/61 (70%), Positives = 53/61 (86%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
+R++KRD ST LR+SE+G+ DQV+LT N DG +F KIRVRS+RIPQIGDKF+SRHGQKG
Sbjct: 373 AQRYTKRDQSTCLRHSESGMXDQVLLTTNADGLRFVKIRVRSIRIPQIGDKFSSRHGQKG 432
Query: 67 T 67
T
Sbjct: 433 T 433
>gi|347309788|gb|AEO79204.1| DNA-directed RNA polymerase II subunit, partial [Hymenolepis
microstoma]
Length = 793
Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 43/60 (71%), Positives = 50/60 (83%)
Query: 8 KRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
KRF+KRD S F+R SE GIVDQVMLT N +G FCK+RVR+ + PQ+GDKFASRHGQKGT
Sbjct: 694 KRFTKRDASVFMRRSEYGIVDQVMLTYNNEGNLFCKVRVRTTKTPQVGDKFASRHGQKGT 753
>gi|56694372|gb|AAW22926.1| RNA polymerase II second largest subunit [Illicium anisatum]
Length = 539
Score = 95.1 bits (235), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 41/64 (64%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R+++RD ST LR+SE+G++DQV+LT N DG +F K+R+RSVR+PQIGDKF+SRHG
Sbjct: 361 QGQASRYTRRDHSTCLRHSESGMIDQVLLTTNADGLRFVKVRMRSVRVPQIGDKFSSRHG 420
Query: 64 QKGT 67
QKGT
Sbjct: 421 QKGT 424
>gi|83415447|gb|ABC17931.1| RNA polymerase II second largest subunit precursor, partial
[Coelomomyces stegomyiae]
Length = 1080
Score = 95.1 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 45/63 (71%), Positives = 51/63 (80%)
Query: 5 GTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQ 64
GT +K+D ST L++SE GIVD VM+T N DGYKF KIRVRS R+PQIGDKFASRHGQ
Sbjct: 515 GTRTTQTKKDVSTGLKSSENGIVDHVMVTTNGDGYKFVKIRVRSTRVPQIGDKFASRHGQ 574
Query: 65 KGT 67
KGT
Sbjct: 575 KGT 577
>gi|83415489|gb|ABC17952.1| RNA polymerase II second largest subunit, partial [Umbelopsis
ramanniana]
Length = 717
Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 45/61 (73%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++ETGIVDQVM+T N DG KF K+RVRS R+PQ+GDKFASRHGQKG
Sbjct: 516 TKGHNKRDASTPLRSTETGIVDQVMVTTNQDGLKFVKVRVRSTRVPQMGDKFASRHGQKG 575
Query: 67 T 67
T
Sbjct: 576 T 576
>gi|367479112|gb|AEX16090.1| RPB2 [Umbelopsis isabellina]
Length = 224
Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 45/61 (73%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++ETGIVDQVM+T N DG KF K+RVRS R+PQ+GDKFASRHGQKG
Sbjct: 125 TKGHTKRDASTPLRSTETGIVDQVMVTTNQDGLKFVKVRVRSTRVPQMGDKFASRHGQKG 184
Query: 67 T 67
T
Sbjct: 185 T 185
>gi|120561249|gb|ABM27009.1| RNA polymerase II second largest subunit, partial [Mucor hiemalis]
Length = 884
Score = 95.1 bits (235), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 45/61 (73%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T +KRD ST LR++ETGIVDQVMLT N DG KF K+RVRS R+PQ+GDKFASRHGQKG
Sbjct: 714 TTTHNKRDASTPLRSTETGIVDQVMLTTNQDGLKFVKVRVRSTRVPQMGDKFASRHGQKG 773
Query: 67 T 67
T
Sbjct: 774 T 774
>gi|367479107|gb|AEX16088.1| RPB2 [Mucor circinelloides f. lusitanicus]
Length = 931
Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 45/61 (73%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T +KRD ST LR++ETGIVDQVMLT N DG KF K+RVRS R+PQ+GDKFASRHGQKG
Sbjct: 723 TTTHNKRDASTPLRSTETGIVDQVMLTTNQDGLKFVKVRVRSTRVPQMGDKFASRHGQKG 782
Query: 67 T 67
T
Sbjct: 783 T 783
>gi|208609693|dbj|BAG72308.1| RNA polymerase II second largest subunit [Actinodaphne glomerata]
Length = 167
Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G T R+++RD ST LR+SE+G+VD V+LT N DG +F K+R+RSVRIPQIGDKF+SRHG
Sbjct: 42 QGQTSRYTRRDHSTSLRHSESGMVDLVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHG 101
Query: 64 QKGT 67
QKGT
Sbjct: 102 QKGT 105
>gi|3746600|gb|AAC64015.1| RNA polymerase II subunit 2 [Mostuea brunonis]
Length = 255
Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 45/64 (70%), Positives = 54/64 (84%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+GT RF++RD ST LR+SETG+VDQV+LT N DG KF KIR++SVRIPQIG+KF SR G
Sbjct: 6 QGTNSRFTRRDHSTSLRHSETGVVDQVLLTTNADGLKFVKIRMKSVRIPQIGNKFTSRPG 65
Query: 64 QKGT 67
QKGT
Sbjct: 66 QKGT 69
>gi|40642974|emb|CAD89599.1| RNA polymerase II, second largest subunit [Borago officinalis]
Length = 355
Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 42/64 (65%), Positives = 54/64 (84%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R+++RD ST +R+SE G+VDQV+LT N DG +F K+R+RSVRIPQIGDKF+SRHG
Sbjct: 152 QGQASRYTRRDHSTSMRHSENGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHG 211
Query: 64 QKGT 67
QKGT
Sbjct: 212 QKGT 215
>gi|312204324|gb|ADQ47479.1| RNA polymerase II second largest subunit [Cyanodermella viridula]
Length = 714
Score = 94.7 bits (234), Expect = 7e-18, Method: Composition-based stats.
Identities = 42/61 (68%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK SKRD ST LR++E GIVD+V++T N DG KFCK+R+R+ ++PQIGDKFASRHGQKG
Sbjct: 554 TKIMSKRDASTPLRSTENGIVDKVLVTTNADGAKFCKVRMRTTKVPQIGDKFASRHGQKG 613
Query: 67 T 67
T
Sbjct: 614 T 614
>gi|384498030|gb|EIE88521.1| DNA-directed RNA polymerase II subunit RPB2 [Rhizopus delemar RA
99-880]
Length = 1193
Score = 94.4 bits (233), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 45/61 (73%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T +KRD ST LR++ETGIVDQVMLT N DG KF K+RVRS R+PQ+GDKFASRHGQKG
Sbjct: 902 TTTHNKRDASTPLRSTETGIVDQVMLTTNQDGLKFVKVRVRSTRVPQMGDKFASRHGQKG 961
Query: 67 T 67
T
Sbjct: 962 T 962
>gi|67810699|gb|AAY82002.1| RNA polymerase II second largest subunit [Selaginella erythropus]
Length = 581
Score = 94.4 bits (233), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 53/61 (86%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
+R++KRD ST LR+SE+G++DQV+LT N DG +F K RVRS+RIPQIGDKF+SRHGQKG
Sbjct: 380 AQRYTKRDQSTCLRHSESGMIDQVLLTTNADGLRFVKTRVRSIRIPQIGDKFSSRHGQKG 439
Query: 67 T 67
T
Sbjct: 440 T 440
>gi|56694360|gb|AAW22920.1| RNA polymerase II second largest subunit [Larix occidentalis]
Length = 534
Score = 94.4 bits (233), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 44/63 (69%), Positives = 54/63 (85%)
Query: 5 GTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQ 64
G +R+ KRD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVRIPQIGDKF+SRHGQ
Sbjct: 357 GQQQRYIKRDQSTSLRHSESGMVDQVLLTTNQDGLRFVKVRMRSVRIPQIGDKFSSRHGQ 416
Query: 65 KGT 67
KGT
Sbjct: 417 KGT 419
>gi|56694292|gb|AAW22886.1| RNA polymerase II second largest subunit [Isoetes sp. JZ73]
Length = 536
Score = 94.4 bits (233), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 53/61 (86%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
+R++KRD ST LR+SE+G++DQV+LT N DG +F K RVRS+RIPQIGDKF+SRHGQKG
Sbjct: 371 AQRYTKRDQSTPLRHSESGMIDQVLLTTNADGLRFVKTRVRSIRIPQIGDKFSSRHGQKG 430
Query: 67 T 67
T
Sbjct: 431 T 431
>gi|40642972|emb|CAD89598.1| RNA polymerase II, second largest subunit [Borago officinalis]
Length = 355
Score = 94.4 bits (233), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 42/64 (65%), Positives = 54/64 (84%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R+++RD ST +R+SE G+VDQV+LT N DG +F K+R+RSVRIPQIGDKF+SRHG
Sbjct: 152 QGQASRYTRRDHSTSMRHSENGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHG 211
Query: 64 QKGT 67
QKGT
Sbjct: 212 QKGT 215
>gi|145307948|gb|ABP57268.1| RNA polymerase II second largest subunit, partial [Schizangiella
sp. ARSEF 2237]
Length = 266
Score = 94.4 bits (233), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 45/61 (73%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ SKRD ST LR++E GIVDQVMLT N +G KF K+RVRS RIPQ+GDKFASRHGQKG
Sbjct: 154 TRTHSKRDASTPLRSTENGIVDQVMLTTNQEGLKFVKVRVRSTRIPQMGDKFASRHGQKG 213
Query: 67 T 67
T
Sbjct: 214 T 214
>gi|120561269|gb|ABM27019.1| RNA polymerase II second largest subunit, partial [Chytriomyces
hyalinus]
Length = 883
Score = 94.4 bits (233), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 41/57 (71%), Positives = 51/57 (89%)
Query: 11 SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
+KRD ST L+++E GI+DQVM+T N DGYKF K+R+RS+R+PQIGDKFASRHGQKGT
Sbjct: 719 TKRDDSTPLKSTEAGIIDQVMVTTNADGYKFVKVRMRSIRVPQIGDKFASRHGQKGT 775
>gi|120561271|gb|ABM27020.1| RNA polymerase II second largest subunit, partial [Chytriomyces
hyalinus]
Length = 883
Score = 94.4 bits (233), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 41/57 (71%), Positives = 51/57 (89%)
Query: 11 SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
+KRD ST L+++E GI+DQVM+T N DGYKF K+R+RS+R+PQIGDKFASRHGQKGT
Sbjct: 719 TKRDDSTPLKSTEAGIIDQVMVTTNADGYKFVKVRMRSIRVPQIGDKFASRHGQKGT 775
>gi|56694352|gb|AAW22916.1| RNA polymerase II second largest subunit [Juniperus communis]
Length = 514
Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 43/63 (68%), Positives = 54/63 (85%)
Query: 5 GTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQ 64
G +++KRD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVRIPQIGDKF+SRHGQ
Sbjct: 346 GQVSKYTKRDQSTSLRHSESGMVDQVLLTTNQDGLRFVKVRMRSVRIPQIGDKFSSRHGQ 405
Query: 65 KGT 67
KGT
Sbjct: 406 KGT 408
>gi|56694350|gb|AAW22915.1| RNA polymerase II second largest subunit [Cephalotaxus fortunei]
Length = 533
Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 43/63 (68%), Positives = 54/63 (85%)
Query: 5 GTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQ 64
G +++KRD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVRIPQIGDKF+SRHGQ
Sbjct: 357 GQVSKYTKRDQSTSLRHSESGMVDQVLLTTNQDGLRFVKVRMRSVRIPQIGDKFSSRHGQ 416
Query: 65 KGT 67
KGT
Sbjct: 417 KGT 419
>gi|4867799|emb|CAB43059.1| RNA polymerase II [Antonia ovata]
Length = 262
Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 44/58 (75%), Positives = 51/58 (87%)
Query: 10 FSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
++KRD ST LR+SE GIVDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHGQKGT
Sbjct: 18 YTKRDHSTSLRHSENGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGT 75
>gi|68131860|gb|AAY85208.1| RNA polymerase II second largest subunit [Euptelea polyandra]
Length = 874
Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 42/62 (67%), Positives = 54/62 (87%)
Query: 6 TTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQK 65
+ R+++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVRIPQIGDKF+SRHGQK
Sbjct: 785 ASSRYTRRDHSTSLRHSESGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQK 844
Query: 66 GT 67
GT
Sbjct: 845 GT 846
>gi|145307946|gb|ABP57267.1| RNA polymerase II second largest subunit, partial [Schizangiella
serpentis]
Length = 263
Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 45/61 (73%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ SKRD ST LR++E GIVDQVMLT N +G KF K+RVRS RIPQ+GDKFASRHGQKG
Sbjct: 151 TRTHSKRDASTPLRSTENGIVDQVMLTTNQEGLKFVKVRVRSTRIPQMGDKFASRHGQKG 210
Query: 67 T 67
T
Sbjct: 211 T 211
>gi|56694346|gb|AAW22913.1| RNA polymerase II second largest subunit [Taxus brevifolia]
Length = 549
Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 43/63 (68%), Positives = 54/63 (85%)
Query: 5 GTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQ 64
G +++KRD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVRIPQIGDKF+SRHGQ
Sbjct: 354 GQVSKYTKRDQSTSLRHSESGMVDQVLLTTNQDGLRFVKVRMRSVRIPQIGDKFSSRHGQ 413
Query: 65 KGT 67
KGT
Sbjct: 414 KGT 416
>gi|56694356|gb|AAW22918.1| RNA polymerase II second largest subunit [Sequoiadendron giganteum]
Length = 549
Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 43/63 (68%), Positives = 54/63 (85%)
Query: 5 GTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQ 64
G +++KRD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVRIPQIGDKF+SRHGQ
Sbjct: 354 GQVSKYTKRDQSTSLRHSESGMVDQVLLTTNQDGLRFVKVRMRSVRIPQIGDKFSSRHGQ 413
Query: 65 KGT 67
KGT
Sbjct: 414 KGT 416
>gi|56694358|gb|AAW22919.1| RNA polymerase II second largest subunit [Metasequoia
glyptostroboides]
Length = 533
Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 43/63 (68%), Positives = 54/63 (85%)
Query: 5 GTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQ 64
G +++KRD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVRIPQIGDKF+SRHGQ
Sbjct: 356 GQVSKYTKRDQSTSLRHSESGMVDQVLLTTNQDGLRFVKVRMRSVRIPQIGDKFSSRHGQ 415
Query: 65 KGT 67
KGT
Sbjct: 416 KGT 418
>gi|56694318|gb|AAW22899.1| RNA polymerase II second largest subunit [Macrozamia moorei]
Length = 523
Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 43/63 (68%), Positives = 53/63 (84%)
Query: 5 GTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQ 64
G R++KRD ST LR+SE+G+VDQV+LT N DG +F K+R+ SVRIPQIGDKF+SRHGQ
Sbjct: 346 GQAARYTKRDQSTSLRHSESGMVDQVLLTTNADGLRFVKVRMXSVRIPQIGDKFSSRHGQ 405
Query: 65 KGT 67
KGT
Sbjct: 406 KGT 408
>gi|56694324|gb|AAW22902.1| RNA polymerase II second largest subunit [Zamia integrifolia]
Length = 556
Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 43/63 (68%), Positives = 53/63 (84%)
Query: 5 GTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQ 64
G R++KRD ST LR+S +G+VDQV+LT N DG +F K+R+RSVRIPQIGDKF+SRHGQ
Sbjct: 388 GQAARYTKRDQSTSLRHSXSGMVDQVLLTTNADGLRFVKVRMRSVRIPQIGDKFSSRHGQ 447
Query: 65 KGT 67
KGT
Sbjct: 448 KGT 450
>gi|56694348|gb|AAW22914.1| RNA polymerase II second largest subunit [Cunninghamia lanceolata]
Length = 550
Score = 94.0 bits (232), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 43/63 (68%), Positives = 54/63 (85%)
Query: 5 GTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQ 64
G +++KRD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVRIPQIGDKF+SRHGQ
Sbjct: 355 GQVSKYTKRDQSTSLRHSESGMVDQVLLTTNQDGLRFVKVRMRSVRIPQIGDKFSSRHGQ 414
Query: 65 KGT 67
KGT
Sbjct: 415 KGT 417
>gi|307103930|gb|EFN52187.1| hypothetical protein CHLNCDRAFT_59036 [Chlorella variabilis]
Length = 1175
Score = 94.0 bits (232), Expect = 9e-18, Method: Composition-based stats.
Identities = 41/63 (65%), Positives = 53/63 (84%)
Query: 5 GTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQ 64
G +R+SK+D ST LR+SE+G++D V++T DG +F K+RVRSVRIPQ+GDKFASRHGQ
Sbjct: 884 GLPQRYSKKDASTALRHSESGMIDSVLVTTGADGQRFVKMRVRSVRIPQVGDKFASRHGQ 943
Query: 65 KGT 67
KGT
Sbjct: 944 KGT 946
>gi|83415493|gb|ABC17954.1| RNA polymerase II second largest subunit, partial [Phycomyces
blakesleeanus]
Length = 801
Score = 94.0 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 44/61 (72%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +K D ST LR++ETGIVDQVMLT N DG KF K+RVRS R+PQ+GDKFASRHGQKG
Sbjct: 714 TQTHNKHDASTPLRSTETGIVDQVMLTTNQDGLKFVKVRVRSTRVPQMGDKFASRHGQKG 773
Query: 67 T 67
T
Sbjct: 774 T 774
>gi|4867870|emb|CAB43084.1| RNA polymerase II [Spigelia anthelmia]
Length = 260
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/59 (72%), Positives = 52/59 (88%)
Query: 9 RFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
R+++RD ST LR++E GIVDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHGQKGT
Sbjct: 15 RYTRRDHSTSLRHNENGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGT 73
>gi|46277253|gb|AAS86817.1| RNA polymerase II second largest subunit, partial [Sequoia
sempervirens]
Length = 556
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/63 (68%), Positives = 53/63 (84%)
Query: 5 GTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQ 64
G ++ KRD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVRIPQIGDKF+SRHGQ
Sbjct: 354 GQVSKYPKRDQSTSLRHSESGMVDQVLLTTNQDGLRFVKVRMRSVRIPQIGDKFSSRHGQ 413
Query: 65 KGT 67
KGT
Sbjct: 414 KGT 416
>gi|68131878|gb|AAY85217.1| RNA polymerase II second largest subunit [Muehlenbeckia platyclada]
Length = 875
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/59 (72%), Positives = 51/59 (86%)
Query: 9 RFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
R+++RD S LR+SE GIVDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHGQKGT
Sbjct: 789 RYTRRDHSISLRHSENGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGT 847
>gi|46277273|gb|AAS86827.1| RNA polymerase II second largest subunit, partial [Antirrhinum
majus]
Length = 573
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/64 (65%), Positives = 54/64 (84%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
E RF+++D S+ LR+SE+G+VDQV+LT N DG +F K+R+RSVRIPQIGDKF+SRHG
Sbjct: 369 ENQNIRFTRQDHSSSLRHSESGVVDQVLLTTNADGLRFVKVRIRSVRIPQIGDKFSSRHG 428
Query: 64 QKGT 67
QKGT
Sbjct: 429 QKGT 432
>gi|83415473|gb|ABC17944.1| RNA polymerase II second largest subunit, partial [Conidiobolus
coronatus]
Length = 727
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/63 (71%), Positives = 51/63 (80%)
Query: 5 GTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQ 64
G +KRD ST LR++ETGIVDQVMLT N DG KF K+RVRS R+PQ+GDKFASRHGQ
Sbjct: 524 GQRTNHTKRDASTPLRSTETGIVDQVMLTTNNDGLKFVKVRVRSTRVPQMGDKFASRHGQ 583
Query: 65 KGT 67
KGT
Sbjct: 584 KGT 586
>gi|68300802|gb|AAY89343.1| RNA polymerase II second largest subunit [Antirrhinum majus]
Length = 1198
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/64 (65%), Positives = 54/64 (84%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
E RF+++D S+ LR+SE+G+VDQV+LT N DG +F K+R+RSVRIPQIGDKF+SRHG
Sbjct: 893 ENQNIRFTRQDHSSSLRHSESGVVDQVLLTTNADGLRFVKVRIRSVRIPQIGDKFSSRHG 952
Query: 64 QKGT 67
QKGT
Sbjct: 953 QKGT 956
>gi|56694354|gb|AAW22917.1| RNA polymerase II second largest subunit [Thuja plicata]
Length = 514
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/63 (68%), Positives = 53/63 (84%)
Query: 5 GTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQ 64
G +++KRD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVRIPQIGDKF SRHGQ
Sbjct: 346 GQVSKYTKRDQSTSLRHSESGMVDQVLLTTNQDGLRFVKVRMRSVRIPQIGDKFXSRHGQ 405
Query: 65 KGT 67
KGT
Sbjct: 406 KGT 408
>gi|255073731|ref|XP_002500540.1| predicted protein [Micromonas sp. RCC299]
gi|226515803|gb|ACO61798.1| predicted protein [Micromonas sp. RCC299]
Length = 1178
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/63 (68%), Positives = 52/63 (82%)
Query: 5 GTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQ 64
+KRF+KRD ST ++NSETGI+DQV+LT N G +F KIRVRS R PQ+GDKF+SRHGQ
Sbjct: 887 AVSKRFTKRDCSTGMKNSETGIIDQVLLTTNDQGLRFVKIRVRSCRTPQVGDKFSSRHGQ 946
Query: 65 KGT 67
KGT
Sbjct: 947 KGT 949
>gi|67810650|gb|AAY82001.1| RNA polymerase II second largest subunit [Sphagnum sp. JL-2005]
Length = 704
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 53/61 (86%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
+R++KRD ST LR+SE+G++DQV+LT N DG +F KIRVRS+RIPQIGDKF+SRHGQK
Sbjct: 380 AQRYTKRDQSTCLRHSESGMIDQVLLTTNADGLRFVKIRVRSIRIPQIGDKFSSRHGQKC 439
Query: 67 T 67
T
Sbjct: 440 T 440
>gi|56694294|gb|AAW22887.1| RNA polymerase II second largest subunit [Lycopodium annotinum]
Length = 533
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 53/61 (86%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
+R++KRD ST LR+SE+G++DQ +LT N DG +F K+RVRS+RIPQIGDKF+SRHGQKG
Sbjct: 367 AQRYTKRDQSTCLRHSESGMIDQXVLTTNADGLRFVKVRVRSIRIPQIGDKFSSRHGQKG 426
Query: 67 T 67
T
Sbjct: 427 T 427
>gi|83415469|gb|ABC17942.1| RNA polymerase II second largest subunit, partial [Basidiobolus
ranarum]
Length = 720
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/61 (72%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E GIVDQVMLT N +G KF K+RVRS R+PQ+GDKFASRHGQKG
Sbjct: 519 TKTHNKRDASTPLRSTENGIVDQVMLTTNQEGLKFVKVRVRSTRVPQMGDKFASRHGQKG 578
Query: 67 T 67
T
Sbjct: 579 T 579
>gi|56694362|gb|AAW22921.1| RNA polymerase II second largest subunit [Pseudotsuga menziesii]
Length = 554
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/63 (68%), Positives = 54/63 (85%)
Query: 5 GTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQ 64
G +R+ +RD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVRIPQIGDKF+SRHGQ
Sbjct: 359 GQQQRYIRRDQSTSLRHSESGMVDQVLLTTNQDGLRFVKVRMRSVRIPQIGDKFSSRHGQ 418
Query: 65 KGT 67
KGT
Sbjct: 419 KGT 421
>gi|120407526|gb|AAY82000.2| RNA polymerase II second largest subunit [Coleochaete scutata]
Length = 702
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/62 (70%), Positives = 53/62 (85%)
Query: 6 TTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQK 65
+RF+KRD ST L++SE+G+VDQV+LT N G +F K+RVRSVRIPQIGDKFASRHGQK
Sbjct: 376 AARRFTKRDQSTSLKHSESGMVDQVLLTTNDQGLRFVKMRVRSVRIPQIGDKFASRHGQK 435
Query: 66 GT 67
GT
Sbjct: 436 GT 437
>gi|298705314|emb|CBJ49004.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 1277
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/57 (71%), Positives = 51/57 (89%)
Query: 11 SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
SK+D ST +R+ E GIVD+VMLT N +G+KFCK+R+R+VR+PQIGDKFASRHGQKGT
Sbjct: 982 SKKDSSTVMRSHEDGIVDRVMLTTNQEGFKFCKVRIRNVRVPQIGDKFASRHGQKGT 1038
>gi|159487647|ref|XP_001701834.1| DNA-directed RNA polymerase II, 135 kDa polypeptide [Chlamydomonas
reinhardtii]
gi|158281053|gb|EDP06809.1| DNA-directed RNA polymerase II, 135 kDa polypeptide [Chlamydomonas
reinhardtii]
Length = 1634
Score = 93.2 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 41/63 (65%), Positives = 50/63 (79%)
Query: 5 GTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQ 64
G +RF+K+D S LR E G++DQVMLT N +G KF KIRVR++ IPQ+GDKFASRHGQ
Sbjct: 903 GAVQRFTKKDASLALRGHEAGVIDQVMLTTNDEGQKFVKIRVRTICIPQVGDKFASRHGQ 962
Query: 65 KGT 67
KGT
Sbjct: 963 KGT 965
>gi|68131844|gb|AAY85200.1| RNA polymerase II second largest subunit [Coriaria sarmentosa]
Length = 952
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/62 (69%), Positives = 51/62 (82%)
Query: 6 TTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQK 65
R+++ D S LR+SETGIVDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHGQK
Sbjct: 785 AAARYTRSDHSISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQK 844
Query: 66 GT 67
GT
Sbjct: 845 GT 846
>gi|365927724|gb|AEX07766.1| RNA polymerase II subunit 2 [Steccherinum ochraceum]
Length = 673
Score = 93.2 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 43/61 (70%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK S+RD ST L+++E+GI+DQV++T N +G KF KIRVRS RIPQIGDKFASRHGQKG
Sbjct: 542 TKTHSRRDVSTPLKSTESGIIDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKG 601
Query: 67 T 67
T
Sbjct: 602 T 602
>gi|83415467|gb|ABC17941.1| RNA polymerase II second largest subunit, partial [Endogone
pisiformis]
Length = 720
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/57 (75%), Positives = 50/57 (87%)
Query: 11 SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
SKRD ST LR++ETGIVDQVM+T N +G KF K+RVRS R+PQ+GDKFASRHGQKGT
Sbjct: 523 SKRDASTPLRSTETGIVDQVMVTTNQEGLKFVKVRVRSTRVPQMGDKFASRHGQKGT 579
>gi|357216633|gb|AET71050.1| RNA polymerase II second largest subunit, partial [Trametes
gibbosa]
Length = 623
Score = 92.8 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 43/61 (70%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST L+++E+GI+DQV+LT N +G KF KIRVRS RIPQIGDKFASRHGQKG
Sbjct: 538 TRTHTKRDVSTPLKSTESGIIDQVLLTTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKG 597
Query: 67 T 67
T
Sbjct: 598 T 598
>gi|68300857|gb|AAY89365.1| RNA polymerase IV second largest subunit precursor [Chlamydomonas
reinhardtii]
Length = 1607
Score = 92.8 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 41/63 (65%), Positives = 50/63 (79%)
Query: 5 GTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQ 64
G +RF+K+D S LR E G++DQVMLT N +G KF KIRVR++ IPQ+GDKFASRHGQ
Sbjct: 876 GAVQRFTKKDASLALRGHEAGVIDQVMLTTNDEGQKFVKIRVRTICIPQVGDKFASRHGQ 935
Query: 65 KGT 67
KGT
Sbjct: 936 KGT 938
>gi|56694302|gb|AAW22891.1| RNA polymerase II second largest subunit [Cryptogramma crispa]
Length = 537
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/61 (70%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
+R+SKRD ST LR+SE+G+VDQV+LT N DG + KIRV S+RIPQIGDKF+SRHGQKG
Sbjct: 371 AQRYSKRDQSTCLRHSESGMVDQVLLTTNADGLRXVKIRVXSIRIPQIGDKFSSRHGQKG 430
Query: 67 T 67
T
Sbjct: 431 T 431
>gi|55273987|gb|AAV48864.1| RNA polymerase II second largest subunit [Albatrellus higanensis]
Length = 913
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/61 (72%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK S+RD ST L+++E+GI+DQV+LT N +G KF KIRVRS RIPQIGDKFASRHGQKG
Sbjct: 721 TKTHSRRDVSTPLKSTESGIIDQVLLTTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKG 780
Query: 67 T 67
T
Sbjct: 781 T 781
>gi|365927722|gb|AEX07765.1| RNA polymerase II subunit 2 [Junghuhnia pseudozilingiana]
Length = 360
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/61 (72%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK S+RD ST L+++E+GI+DQV+LT N +G KF KIRVRS RIPQIGDKFASRHGQKG
Sbjct: 192 TKTHSRRDVSTPLKSTESGIIDQVLLTTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKG 251
Query: 67 T 67
T
Sbjct: 252 T 252
>gi|357216635|gb|AET71051.1| RNA polymerase II second largest subunit, partial [Lenzites
betulinus]
Length = 682
Score = 92.8 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 43/61 (70%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST L+++E+GI+DQV+LT N +G KF KIRVRS RIPQIGDKFASRHGQKG
Sbjct: 543 TRTHTKRDVSTPLKSTESGIIDQVLLTTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKG 602
Query: 67 T 67
T
Sbjct: 603 T 603
>gi|40643899|emb|CAD89688.1| RNA polymerase II, second largest subunit [Ilex x meserveae]
Length = 356
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/64 (65%), Positives = 53/64 (82%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R+++RD ST LR+SE GIVDQV+LT N DG +F K+R+RSVR+PQIGDKF+SRHG
Sbjct: 152 QGQASRYTRRDHSTSLRHSEHGIVDQVLLTTNADGLRFVKVRMRSVRLPQIGDKFSSRHG 211
Query: 64 QKGT 67
Q GT
Sbjct: 212 QXGT 215
>gi|120561279|gb|ABM27024.1| RNA polymerase II second largest subunit, partial [Monosiga
brevicollis]
Length = 904
Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/59 (74%), Positives = 50/59 (84%)
Query: 9 RFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
RF KRD S FLR+SE+GI+D VM+++N G KF KIRVRSVR PQIGDKFASRHGQKGT
Sbjct: 705 RFEKRDKSLFLRSSESGIIDGVMISVNQKGEKFVKIRVRSVRTPQIGDKFASRHGQKGT 763
>gi|56694330|gb|AAW22905.1| RNA polymerase II second largest subunit [Welwitschia mirabilis]
Length = 553
Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 54/64 (84%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
E R+++RD ST +R+SE+G+VDQV+LT N DG +F KIR+RSVRIPQIGDKF+SRHG
Sbjct: 375 ENAGGRYTRRDQSTSMRHSESGMVDQVLLTTNQDGLRFVKIRMRSVRIPQIGDKFSSRHG 434
Query: 64 QKGT 67
QKGT
Sbjct: 435 QKGT 438
>gi|46277255|gb|AAS86818.1| RNA polymerase II second largest subunit, partial [Gnetum gnemon]
Length = 546
Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 54/64 (84%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
E +F++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVRIPQIGDKF+SRHG
Sbjct: 368 ENAGGKFTRRDQSTSLRHSESGMVDQVLLTTNQDGLRFVKVRMRSVRIPQIGDKFSSRHG 427
Query: 64 QKGT 67
QKGT
Sbjct: 428 QKGT 431
>gi|56694328|gb|AAW22904.1| RNA polymerase II second largest subunit [Ephedra distachya]
Length = 551
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/59 (71%), Positives = 53/59 (89%)
Query: 9 RFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
R+++RD ST +R+SE+G+VDQV+LT N DG +F KIR+RSVRIPQIGDKF+SRHGQKGT
Sbjct: 360 RYTRRDQSTSMRHSESGMVDQVLLTTNQDGLRFVKIRMRSVRIPQIGDKFSSRHGQKGT 418
>gi|385301281|gb|EIF45483.1| dna-directed rna polymerase [Dekkera bruxellensis AWRI1499]
Length = 1155
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E+GIVDQVMLT N +G KF K+R+R+ ++PQIGDKFASRHGQKG
Sbjct: 904 TKYHTKRDASTPLRSAESGIVDQVMLTTNAEGLKFVKVRMRTTKVPQIGDKFASRHGQKG 963
Query: 67 T 67
T
Sbjct: 964 T 964
>gi|4867868|emb|CAB43076.1| RNA polymerase II [Neuburgia corynocarpum]
Length = 258
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/59 (71%), Positives = 51/59 (86%)
Query: 9 RFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
R++KRD ST LR+SE G+VDQV+LT N DG + K+RVRSVRIPQIGD+F+SRHGQKGT
Sbjct: 7 RYTKRDHSTSLRHSENGVVDQVLLTTNADGLRLVKVRVRSVRIPQIGDRFSSRHGQKGT 65
>gi|325186944|emb|CCA21488.1| PREDICTED: hypothetical protein [Albugo laibachii Nc14]
Length = 1234
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/60 (70%), Positives = 49/60 (81%)
Query: 8 KRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
+R KRD ST LR+ E GI+D VMLT N DG+KF K+R R++RIPQIGDKFASRHGQKGT
Sbjct: 931 QRHQKRDASTSLRSHENGIIDSVMLTTNADGFKFTKVRFRNIRIPQIGDKFASRHGQKGT 990
>gi|328769515|gb|EGF79559.1| RNA polymerase II second largest subunit precursor [Batrachochytrium
dendrobatidis JAM81]
Length = 1312
Score = 92.4 bits (228), Expect = 3e-17, Method: Composition-based stats.
Identities = 41/61 (67%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T +KRD ST L+++E GIVDQV++T N DG+KF K+RVRS+RIP +GDKFASRHGQKG
Sbjct: 1023 TTMHTKRDASTPLKSTENGIVDQVLITTNQDGFKFVKVRVRSIRIPHMGDKFASRHGQKG 1082
Query: 67 T 67
T
Sbjct: 1083 T 1083
>gi|86559351|gb|ABD04083.1| RNA polymerase II second largest subunit, partial [Botryobasidium
subcoronatum]
Length = 677
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/63 (66%), Positives = 51/63 (80%)
Query: 5 GTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQ 64
G K ++RD ST L+++E GI+DQV++T N DG KF KIRVRS RIPQ+GDKFASRHGQ
Sbjct: 519 GQRKSHTRRDASTALKSTENGIIDQVLVTTNADGLKFVKIRVRSTRIPQVGDKFASRHGQ 578
Query: 65 KGT 67
KGT
Sbjct: 579 KGT 581
>gi|302832249|ref|XP_002947689.1| hypothetical protein VOLCADRAFT_103593 [Volvox carteri f.
nagariensis]
gi|300267037|gb|EFJ51222.1| hypothetical protein VOLCADRAFT_103593 [Volvox carteri f.
nagariensis]
Length = 1206
Score = 92.4 bits (228), Expect = 3e-17, Method: Composition-based stats.
Identities = 41/63 (65%), Positives = 50/63 (79%)
Query: 5 GTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQ 64
G +RF+K+D S LR E G++DQVMLT N +G KF KIRVR++ IPQ+GDKFASRHGQ
Sbjct: 886 GAVQRFTKKDASLALRGHEAGVIDQVMLTTNDEGQKFVKIRVRTICIPQVGDKFASRHGQ 945
Query: 65 KGT 67
KGT
Sbjct: 946 KGT 948
>gi|83415453|gb|ABC17934.1| RNA polymerase II second largest subunit precursor, partial
[Batrachochytrium dendrobatidis]
Length = 1202
Score = 92.4 bits (228), Expect = 3e-17, Method: Composition-based stats.
Identities = 41/61 (67%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T +KRD ST L+++E GIVDQV++T N DG+KF K+RVRS+RIP +GDKFASRHGQKG
Sbjct: 1001 TTMHTKRDASTPLKSTENGIVDQVLITTNQDGFKFVKVRVRSIRIPHMGDKFASRHGQKG 1060
Query: 67 T 67
T
Sbjct: 1061 T 1061
>gi|396941851|gb|AFN89643.1| RNA polymerase II, partial [Dekkera bruxellensis]
Length = 785
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E+GIVDQVMLT N +G KF K+R+R+ ++PQIGDKFASRHGQKG
Sbjct: 631 TKYXTKRDASTPLRSAESGIVDQVMLTTNAEGLKFVKVRMRTTKVPQIGDKFASRHGQKG 690
Query: 67 T 67
T
Sbjct: 691 T 691
>gi|167519879|ref|XP_001744279.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163777365|gb|EDQ90982.1| predicted protein [Monosiga brevicollis MX1]
Length = 1166
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/59 (74%), Positives = 50/59 (84%)
Query: 9 RFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
RF KRD S FLR+SE+GI+D VM+++N G KF KIRVRSVR PQIGDKFASRHGQKGT
Sbjct: 875 RFEKRDKSLFLRSSESGIIDGVMISVNQKGEKFVKIRVRSVRTPQIGDKFASRHGQKGT 933
>gi|56694344|gb|AAW22912.1| RNA polymerase II second largest subunit [Torreya californica]
Length = 514
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/63 (66%), Positives = 53/63 (84%)
Query: 5 GTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQ 64
G +++KRD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVRIPQIGDKF+ RHGQ
Sbjct: 346 GQVSKYTKRDQSTSLRHSESGMVDQVLLTTNQDGLRFVKVRMRSVRIPQIGDKFSXRHGQ 405
Query: 65 KGT 67
KGT
Sbjct: 406 KGT 408
>gi|301101902|ref|XP_002900039.1| DNA-directed RNA polymerase II 135 kDa polypeptide [Phytophthora
infestans T30-4]
gi|262102614|gb|EEY60666.1| DNA-directed RNA polymerase II 135 kDa polypeptide [Phytophthora
infestans T30-4]
Length = 1202
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/60 (68%), Positives = 49/60 (81%)
Query: 8 KRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
+R KRD ST LR+ E GI+D VMLT N DG+KF K+R R++R+PQIGDKFASRHGQKGT
Sbjct: 903 QRHQKRDASTALRSHENGIIDSVMLTTNADGFKFTKVRFRNIRVPQIGDKFASRHGQKGT 962
>gi|56694342|gb|AAW22911.1| RNA polymerase II second largest subunit [Sciadopitys verticillata]
Length = 514
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/63 (66%), Positives = 53/63 (84%)
Query: 5 GTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQ 64
G R+++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVRIPQIGDKF+SRHG
Sbjct: 346 GQANRYTRRDQSTSLRHSESGMVDQVLLTTNQDGLRFVKVRMRSVRIPQIGDKFSSRHGX 405
Query: 65 KGT 67
KGT
Sbjct: 406 KGT 408
>gi|94410904|gb|ABF18573.1| RNA polymerase II second largest subunit, partial [Fistulina
antarctica]
Length = 690
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 53/61 (86%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ ++RD ST L+++E+GIVDQV++T N DG+KF KIRVRS R+PQIGDKFASRHGQKG
Sbjct: 520 TRNHTRRDVSTPLKSTESGIVDQVLVTTNADGHKFVKIRVRSTRVPQIGDKFASRHGQKG 579
Query: 67 T 67
T
Sbjct: 580 T 580
>gi|357216659|gb|AET71063.1| RNA polymerase II second largest subunit, partial [Datronia mollis]
Length = 656
Score = 92.0 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 43/61 (70%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST L+++E GIVDQV++T N +G KF KIRVRS RIPQIGDKFASRHGQKG
Sbjct: 520 TRTHTKRDVSTPLKSTEQGIVDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKG 579
Query: 67 T 67
T
Sbjct: 580 T 580
>gi|348676682|gb|EGZ16499.1| hypothetical protein PHYSODRAFT_262616 [Phytophthora sojae]
Length = 1171
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 41/60 (68%), Positives = 49/60 (81%)
Query: 8 KRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
+R KRD ST LR+ E GI+D VMLT N DG+KF K+R R++R+PQIGDKFASRHGQKGT
Sbjct: 872 QRHQKRDASTALRSHENGIIDSVMLTTNADGFKFTKVRFRNIRVPQIGDKFASRHGQKGT 931
>gi|40644547|emb|CAD88888.1| DNA-directed RNA polymerase subunit B [Gymnosporia arbutifolia]
Length = 459
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 53/64 (82%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R+++RD S LR+SETG+VDQV+LT N DG + K+RVRSVRIPQIGDKF+SRHG
Sbjct: 281 QGQGSRYTRRDHSISLRHSETGMVDQVLLTTNADGLRSVKVRVRSVRIPQIGDKFSSRHG 340
Query: 64 QKGT 67
QKGT
Sbjct: 341 QKGT 344
>gi|145307870|gb|ABP57240.1| RNA polymerase II second largest subunit, partial [Pandora
blunckii]
gi|145307892|gb|ABP57250.1| RNA polymerase II second largest subunit, partial [Furia americana]
Length = 252
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/61 (72%), Positives = 53/61 (86%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ SKRD ST L+++ETGIVD+VMLT+N +G +F K+RVRS RIPQIGDKFASRHGQKG
Sbjct: 144 TRGHSKRDVSTPLKSTETGIVDRVMLTINQEGMRFAKVRVRSTRIPQIGDKFASRHGQKG 203
Query: 67 T 67
T
Sbjct: 204 T 204
>gi|120561253|gb|ABM27011.1| RNA polymerase II second largest subunit, partial [Funneliformis
mosseae]
Length = 883
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 41/57 (71%), Positives = 50/57 (87%)
Query: 11 SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
+KRD ST +R++ETGIVDQVM+T N +G KF K+RVRS R+PQ+GDKFASRHGQKGT
Sbjct: 717 TKRDASTPMRSTETGIVDQVMVTTNAEGMKFVKVRVRSTRVPQMGDKFASRHGQKGT 773
>gi|120561255|gb|ABM27012.1| RNA polymerase II second largest subunit, partial [Funneliformis
mosseae]
Length = 883
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 41/57 (71%), Positives = 50/57 (87%)
Query: 11 SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
+KRD ST +R++ETGIVDQVM+T N +G KF K+RVRS R+PQ+GDKFASRHGQKGT
Sbjct: 717 TKRDASTPMRSTETGIVDQVMVTTNAEGMKFVKVRVRSTRVPQMGDKFASRHGQKGT 773
>gi|400364959|gb|AFP85964.1| DNA-directed RNA polymerase II second largest subunit, partial
[Pandora blunckii]
Length = 251
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/61 (72%), Positives = 53/61 (86%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ SKRD ST L+++ETGIVD+VMLT+N +G +F K+RVRS RIPQIGDKFASRHGQKG
Sbjct: 143 TRGHSKRDVSTPLKSTETGIVDRVMLTINQEGMRFAKVRVRSTRIPQIGDKFASRHGQKG 202
Query: 67 T 67
T
Sbjct: 203 T 203
>gi|145307890|gb|ABP57249.1| RNA polymerase II second largest subunit, partial [Furia
ithacensis]
Length = 269
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/61 (72%), Positives = 53/61 (86%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ SKRD ST L+++ETGIVD+VMLT+N +G +F K+RVRS RIPQIGDKFASRHGQKG
Sbjct: 154 TRGHSKRDVSTPLKSTETGIVDRVMLTINQEGMRFAKVRVRSTRIPQIGDKFASRHGQKG 213
Query: 67 T 67
T
Sbjct: 214 T 214
>gi|365927726|gb|AEX07767.1| RNA polymerase II subunit 2 [Steccherinum tenue]
Length = 318
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 43/61 (70%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK S+RD ST L+++E+GI+DQV++T N +G KF KIRVRS RIPQIGDKFASRHGQKG
Sbjct: 192 TKTHSRRDVSTPLKSTESGIIDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKG 251
Query: 67 T 67
T
Sbjct: 252 T 252
>gi|400364963|gb|AFP85966.1| DNA-directed RNA polymerase II second largest subunit, partial
[Zoophthora occidentalis]
Length = 257
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/61 (72%), Positives = 53/61 (86%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ SKRD ST L+++ETGIVD+VMLT+N +G +F K+RVRS RIPQIGDKFASRHGQKG
Sbjct: 149 TRGHSKRDVSTPLKSTETGIVDRVMLTINQEGMRFAKVRVRSTRIPQIGDKFASRHGQKG 208
Query: 67 T 67
T
Sbjct: 209 T 209
>gi|52699796|gb|AAU86960.1| DNA-dependent RNA polymerase II second largest subunit [Cudonia
circinans]
Length = 718
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E GIVDQV+LT N DG +F K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 542 TKAHTKRDASTPLRSTENGIVDQVLLTTNADGLRFVKVRMRTTKIPQIGDKFASRHGQKG 601
Query: 67 T 67
T
Sbjct: 602 T 602
>gi|83415485|gb|ABC17950.1| RNA polymerase II second largest subunit, partial [Rhopalomyces
elegans]
Length = 723
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/61 (72%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ ++RD ST LR++ETGIVDQVMLT N +G KF K+RVRS RIPQ+GDKFASRHGQKG
Sbjct: 522 TRSHTRRDISTPLRSTETGIVDQVMLTTNQEGVKFVKVRVRSTRIPQMGDKFASRHGQKG 581
Query: 67 T 67
T
Sbjct: 582 T 582
>gi|145307884|gb|ABP57246.1| RNA polymerase II second largest subunit, partial [Zoophthora
lanceolata]
gi|145307911|gb|ABP57259.1| RNA polymerase II second largest subunit, partial [Zoophthora
phalloides]
gi|145307915|gb|ABP57261.1| RNA polymerase II second largest subunit, partial [Zoophthora
occidentalis]
Length = 261
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/61 (72%), Positives = 53/61 (86%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ SKRD ST L+++ETGIVD+VMLT+N +G +F K+RVRS RIPQIGDKFASRHGQKG
Sbjct: 150 TRGHSKRDVSTPLKSTETGIVDRVMLTINQEGMRFAKVRVRSTRIPQIGDKFASRHGQKG 209
Query: 67 T 67
T
Sbjct: 210 T 210
>gi|400364961|gb|AFP85965.1| DNA-directed RNA polymerase II second largest subunit, partial
[Pandora kondoiensis]
Length = 257
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/61 (72%), Positives = 53/61 (86%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ SKRD ST L+++ETGIVD+VMLT+N +G +F K+RVRS RIPQIGDKFASRHGQKG
Sbjct: 149 TRGHSKRDVSTPLKSTETGIVDRVMLTINQEGMRFAKVRVRSTRIPQIGDKFASRHGQKG 208
Query: 67 T 67
T
Sbjct: 209 T 209
>gi|303273466|ref|XP_003056094.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226462178|gb|EEH59470.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 1172
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 42/63 (66%), Positives = 51/63 (80%)
Query: 5 GTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQ 64
+ RF+KRD ST ++NSETGI+DQV+LT N G +F KIRVRS R PQ+GDKF+SRHGQ
Sbjct: 881 AASNRFTKRDCSTGMKNSETGIIDQVLLTTNDQGLRFVKIRVRSCRTPQVGDKFSSRHGQ 940
Query: 65 KGT 67
KGT
Sbjct: 941 KGT 943
>gi|145307874|gb|ABP57242.1| RNA polymerase II second largest subunit, partial [Zoophthora
anglica]
Length = 263
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/61 (72%), Positives = 53/61 (86%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ SKRD ST L+++ETGIVD+VMLT+N +G +F K+RVRS RIPQIGDKFASRHGQKG
Sbjct: 151 TRGHSKRDVSTPLKSTETGIVDRVMLTINQEGMRFAKVRVRSTRIPQIGDKFASRHGQKG 210
Query: 67 T 67
T
Sbjct: 211 T 211
>gi|365927718|gb|AEX07763.1| RNA polymerase II subunit 2 [Junghuhnia collabens]
Length = 321
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 43/61 (70%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK S+RD ST L+++E+GI+DQV++T N +G KF KIRVRS RIPQIGDKFASRHGQKG
Sbjct: 153 TKTHSRRDVSTPLKSTESGIIDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKG 212
Query: 67 T 67
T
Sbjct: 213 T 213
>gi|145307923|gb|ABP57265.1| RNA polymerase II second largest subunit, partial [Furia
gastropachae]
Length = 261
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/61 (72%), Positives = 53/61 (86%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ SKRD ST L+++ETGIVD+VMLT+N +G +F K+RVRS RIPQIGDKFASRHGQKG
Sbjct: 150 TRGHSKRDVSTPLKSTETGIVDRVMLTINQEGMRFAKVRVRSTRIPQIGDKFASRHGQKG 209
Query: 67 T 67
T
Sbjct: 210 T 210
>gi|145307921|gb|ABP57264.1| RNA polymerase II second largest subunit, partial [Zoophthora
radicans]
Length = 258
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/61 (72%), Positives = 53/61 (86%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ SKRD ST L+++ETGIVD+VMLT+N +G +F K+RVRS RIPQIGDKFASRHGQKG
Sbjct: 149 TRGHSKRDVSTPLKSTETGIVDRVMLTINQEGMRFAKVRVRSTRIPQIGDKFASRHGQKG 208
Query: 67 T 67
T
Sbjct: 209 T 209
>gi|82706461|gb|ABB89608.1| RNA polymerase II second largest subunit, partial [Coccomyces
dentatus]
Length = 565
Score = 92.0 bits (227), Expect = 4e-17, Method: Composition-based stats.
Identities = 41/61 (67%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E GIVDQV++T N DG +F K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 483 TKAHTKRDASTPLRSTENGIVDQVLITTNADGLRFVKVRMRTTKIPQIGDKFASRHGQKG 542
Query: 67 T 67
T
Sbjct: 543 T 543
>gi|4867895|emb|CAB43089.1| RNA polymerase II [Wrightia arborea]
Length = 249
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 43/61 (70%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
+ R+ R+ ST LR+SE GIVDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHGQKG
Sbjct: 2 SXRYXXRNHSTSLRHSENGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKG 61
Query: 67 T 67
T
Sbjct: 62 T 62
>gi|145307900|gb|ABP57254.1| RNA polymerase II second largest subunit, partial [Furia virescens]
Length = 261
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/61 (72%), Positives = 53/61 (86%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ SKRD ST L+++ETGIVD+VMLT+N +G +F K+RVRS RIPQIGDKFASRHGQKG
Sbjct: 150 TRGHSKRDVSTPLKSTETGIVDRVMLTINQEGMRFAKVRVRSTRIPQIGDKFASRHGQKG 209
Query: 67 T 67
T
Sbjct: 210 T 210
>gi|409051856|gb|EKM61332.1| hypothetical protein PHACADRAFT_247866 [Phanerochaete carnosa
HHB-10118-sp]
Length = 1237
Score = 92.0 bits (227), Expect = 4e-17, Method: Composition-based stats.
Identities = 42/61 (68%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST L+++E+GI+DQV++T N +G KF KIRVRS RIPQIGDKFASRHGQKG
Sbjct: 941 TRTHTKRDVSTPLKSTESGIIDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKG 1000
Query: 67 T 67
T
Sbjct: 1001 T 1001
>gi|145307896|gb|ABP57252.1| RNA polymerase II second largest subunit, partial [Pandora
kondoiensis]
Length = 262
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/61 (72%), Positives = 53/61 (86%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ SKRD ST L+++ETGIVD+VMLT+N +G +F K+RVRS RIPQIGDKFASRHGQKG
Sbjct: 151 TRGHSKRDVSTPLKSTETGIVDRVMLTINQEGMRFAKVRVRSTRIPQIGDKFASRHGQKG 210
Query: 67 T 67
T
Sbjct: 211 T 211
>gi|365927720|gb|AEX07764.1| RNA polymerase II subunit 2 [Junghuhnia nitida]
Length = 353
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 43/61 (70%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK S+RD ST L+++E+GI+DQV++T N +G KF KIRVRS RIPQIGDKFASRHGQKG
Sbjct: 185 TKTHSRRDVSTPLKSTESGIIDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKG 244
Query: 67 T 67
T
Sbjct: 245 T 245
>gi|145307919|gb|ABP57263.1| RNA polymerase II second largest subunit, partial [Pandora
neoaphidis]
Length = 249
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/61 (72%), Positives = 53/61 (86%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ SKRD ST L+++ETGIVD+VMLT+N +G +F K+RVRS RIPQIGDKFASRHGQKG
Sbjct: 144 TRGHSKRDVSTPLKSTETGIVDRVMLTINQEGMRFAKVRVRSTRIPQIGDKFASRHGQKG 203
Query: 67 T 67
T
Sbjct: 204 T 204
>gi|83415481|gb|ABC17948.1| RNA polymerase II second largest subunit, partial [Coemansia
reversa]
Length = 722
Score = 92.0 bits (227), Expect = 4e-17, Method: Composition-based stats.
Identities = 43/67 (64%), Positives = 52/67 (77%)
Query: 1 MHLEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFAS 60
+ L TK SK D S LR++E GIVDQVM+T N DG+KF K+R+RS R+PQ+GDKFAS
Sbjct: 515 LELGQRTKSHSKIDASKALRSTECGIVDQVMMTTNGDGFKFVKVRIRSTRVPQMGDKFAS 574
Query: 61 RHGQKGT 67
RHGQKGT
Sbjct: 575 RHGQKGT 581
>gi|83415463|gb|ABC17939.1| RNA polymerase II second largest subunit, partial [Cladochytrium
replicatum]
Length = 725
Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 42/57 (73%), Positives = 50/57 (87%)
Query: 11 SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
+KRD ST L+++E GIVD V++T N DGYKF K+RVRSVRIPQ+GDKFASRHGQKGT
Sbjct: 528 TKRDASTPLKSTEQGIVDSVLVTTNSDGYKFIKVRVRSVRIPQMGDKFASRHGQKGT 584
>gi|145307902|gb|ABP57255.1| RNA polymerase II second largest subunit, partial [Furia
neopyralidarum]
Length = 262
Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 44/61 (72%), Positives = 53/61 (86%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ SKRD ST L+++ETGIVD+VMLT+N +G +F K+RVRS RIPQIGDKFASRHGQKG
Sbjct: 151 TRGHSKRDVSTPLKSTETGIVDRVMLTINQEGMRFAKVRVRSTRIPQIGDKFASRHGQKG 210
Query: 67 T 67
T
Sbjct: 211 T 211
>gi|357216667|gb|AET71067.1| RNA polymerase II second largest subunit, partial [Dentocorticium
sulphurellum]
Length = 559
Score = 91.7 bits (226), Expect = 5e-17, Method: Composition-based stats.
Identities = 43/61 (70%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST L+++E GIVDQV++T N +G KF KIRVRS RIPQIGDKFASRHGQKG
Sbjct: 488 TRTHTKRDVSTPLKSTEQGIVDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKG 547
Query: 67 T 67
T
Sbjct: 548 T 548
>gi|398365417|ref|NP_014794.3| Rpb2p [Saccharomyces cerevisiae S288c]
gi|2507349|sp|P08518.2|RPB2_YEAST RecName: Full=DNA-directed RNA polymerase II subunit RPB2;
Short=RNA polymerase II subunit 2; AltName: Full=B150;
AltName: Full=DNA-directed RNA polymerase II 140 kDa
polypeptide
gi|14278325|pdb|1I3Q|B Chain B, Rna Polymerase Ii Crystal Form I At 3.1 A Resolution
gi|14278336|pdb|1I50|B Chain B, Rna Polymerase Ii Crystal Form Ii At 2.8 A Resolution
gi|14278366|pdb|1I6H|B Chain B, Rna Polymerase Ii Elongation Complex
gi|20150714|pdb|1K83|B Chain B, Crystal Structure Of Yeast Rna Polymerase Ii Complexed
With The Inhibitor Alpha Amanitin
gi|30749617|pdb|1NIK|B Chain B, Wild Type Rna Polymerase Ii
gi|30749738|pdb|1NT9|B Chain B, Complete 12-Subunit Rna Polymerase Ii
gi|34810554|pdb|1PQV|B Chain B, Rna Polymerase Ii-Tfiis Complex
gi|46015416|pdb|1R5U|B Chain B, Rna Polymerase Ii Tfiib Complex
gi|46015781|pdb|1SFO|B Chain B, Rna Polymerase Ii Strand Separated Elongation Complex
gi|56965912|pdb|1R9S|B Chain B, Rna Polymerase Ii Strand Separated Elongation Complex,
Matched Nucleotide
gi|56965924|pdb|1R9T|B Chain B, Rna Polymerase Ii Strand Separated Elongation Complex,
Mismatched Nucleotide
gi|56966108|pdb|1TWA|B Chain B, Rna Polymerase Ii Complexed With Atp
gi|56966122|pdb|1TWC|B Chain B, Rna Polymerase Ii Complexed With Gtp
gi|56966132|pdb|1TWF|B Chain B, Rna Polymerase Ii Complexed With Utp At 2.3 A Resolution
gi|56966142|pdb|1TWG|B Chain B, Rna Polymerase Ii Complexed With Ctp
gi|56966152|pdb|1TWH|B Chain B, Rna Polymerase Ii Complexed With 2'datp
gi|58177165|pdb|1WCM|B Chain B, Complete 12-Subunit Rna Polymerase Ii At 3.8 Ang
gi|61679445|pdb|1Y1W|B Chain B, Complete Rna Polymerase Ii Elongation Complex
gi|61679462|pdb|1Y77|B Chain B, Complete Rna Polymerase Ii Elongation Complex With
Substrate Analogue Gmpcpp
gi|61679503|pdb|1Y1V|B Chain B, Refined Rna Polymerase Ii-tfiis Complex
gi|61679516|pdb|1Y1Y|B Chain B, Rna Polymerase Ii-Tfiis-DnaRNA COMPLEX
gi|83754244|pdb|2B63|B Chain B, Complete Rna Polymerase Ii-Rna Inhibitor Complex
gi|110590855|pdb|2B8K|B Chain B, 12-Subunit Rna Polymerase Ii
gi|122920062|pdb|2E2H|B Chain B, Rna Polymerase Ii Elongation Complex At 5 Mm Mg2+ With Gtp
gi|122920077|pdb|2E2I|B Chain B, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dgtp
gi|122920092|pdb|2E2J|B Chain B, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With
Gmpcpp
gi|122921031|pdb|2NVQ|B Chain B, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
2'dutp
gi|122921067|pdb|2NVT|B Chain B, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Gmpcpp
gi|122921083|pdb|2NVX|B Chain B, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dutp
gi|122921098|pdb|2NVY|B Chain B, Rna Polymerase Ii Form Ii In 150 Mm Mn+2
gi|122921110|pdb|2NVZ|B Chain B, Rna Polymerase Ii Elongation Complex With Utp, Updated
112006
gi|134104675|pdb|2JA5|B Chain B, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
A
gi|134104690|pdb|2JA6|B Chain B, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
B
gi|134104711|pdb|2JA7|B Chain B, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
gi|134104723|pdb|2JA7|N Chain N, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
gi|134104735|pdb|2JA8|B Chain B, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
D
gi|146387185|pdb|2YU9|B Chain B, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Utp
gi|160877774|pdb|2R7Z|B Chain B, Cisplatin Lesion Containing Rna Polymerase Ii Elongation
Complex
gi|161172228|pdb|2R92|B Chain B, Elongation Complex Of Rna Polymerase Ii With Artificial
Rdrp Scaffold
gi|161172241|pdb|2R93|B Chain B, Elongation Complex Of Rna Polymerase Ii With A Hepatitis
Delta Virus-Derived Rna Stem Loop
gi|190613463|pdb|2VUM|B Chain B, Alpha-Amanitin Inhibited Complete Rna Polymerase Ii
Elongation Complex
gi|194368735|pdb|3CQZ|B Chain B, Crystal Structure Of 10 Subunit Rna Polymerase Ii In
Complex With The Inhibitor Alpha-Amanitin
gi|224983591|pdb|3FKI|B Chain B, 12-Subunit Rna Polymerase Ii Refined With Zn-Sad Data
gi|239781917|pdb|3GTG|B Chain B, Backtracked Rna Polymerase Ii Complex With 12mer Rna
gi|239781930|pdb|3GTJ|B Chain B, Backtracked Rna Polymerase Ii Complex With 13mer Rna
gi|239781943|pdb|3GTK|B Chain B, Backtracked Rna Polymerase Ii Complex With 18mer Rna
gi|239781956|pdb|3GTL|B Chain B, Backtracked Rna Polymerase Ii Complex With 13mer With G<>u
Mismatch
gi|239781969|pdb|3GTM|B Chain B, Co-Complex Of Backtracked Rna Polymerase Ii With Tfiis
gi|239781983|pdb|3GTO|B Chain B, Backtracked Rna Polymerase Ii Complex With 15mer Rna
gi|239781996|pdb|3GTP|B Chain B, Backtracked Rna Polymerase Ii Complex With 24mer Rna
gi|239782009|pdb|3GTQ|B Chain B, Backtracked Rna Polymerase Ii Complex Induced By Damage
gi|240104512|pdb|3H3V|C Chain C, Yeast Rnap Ii Containing Poly(A)-Signal Sequence In The
Active Site
gi|254839442|pdb|3HOU|B Chain B, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839457|pdb|3HOU|N Chain N, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839472|pdb|3HOV|B Chain B, Complete Rna Polymerase Ii Elongation Complex Ii
gi|254839487|pdb|3HOW|B Chain B, Complete Rna Polymerase Ii Elongation Complex Iii With A
T-U Mismatch And A Frayed Rna 3'-Uridine
gi|254839502|pdb|3HOX|B Chain B, Complete Rna Polymerase Ii Elongation Complex V
gi|254839517|pdb|3HOY|B Chain B, Complete Rna Polymerase Ii Elongation Complex Vi
gi|254839532|pdb|3HOZ|B Chain B, Complete Rna Polymerase Ii Elongation Complex Iv With A
T-U Mismatch And A Frayed Rna 3'-Guanine
gi|257471947|pdb|3I4M|B Chain B, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex D
gi|257471962|pdb|3I4N|B Chain B, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex E
gi|266618766|pdb|3K1F|B Chain B, Crystal Structure Of Rna Polymerase Ii In Complex With
Tfiib
gi|269914553|pdb|3K7A|B Chain B, Crystal Structure Of An Rna Polymerase Ii-Tfiib Complex
gi|295982476|pdb|3M3Y|B Chain B, Rna Polymerase Ii Elongation Complex C
gi|295982489|pdb|3M4O|B Chain B, Rna Polymerase Ii Elongation Complex B
gi|325053964|pdb|3PO2|B Chain B, Arrested Rna Polymerase Ii Elongation Complex
gi|325053979|pdb|3PO3|B Chain B, Arrested Rna Polymerase Ii Reactivation Intermediate
gi|326634539|pdb|3QT1|B Chain B, Rna Polymerase Ii Variant Containing A Chimeric Rpb9-C11
Subunit
gi|343197457|pdb|3RZD|B Chain B, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
gi|343197469|pdb|3RZO|B Chain B, Rna Polymerase Ii Initiation Complex With A 4-Nt Rna
gi|343197481|pdb|3S14|B Chain B, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
gi|343197493|pdb|3S15|B Chain B, Rna Polymerase Ii Initiation Complex With A 7-Nt Rna
gi|343197505|pdb|3S16|B Chain B, Rna Polymerase Ii Initiation Complex With An 8-Nt Rna
gi|343197517|pdb|3S17|B Chain B, Rna Polymerase Ii Initiation Complex With A 9-Nt Rna
gi|343197529|pdb|3S1M|B Chain B, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 1)
gi|343197541|pdb|3S1N|B Chain B, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 2)
gi|343197553|pdb|3S1Q|B Chain B, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Atp
gi|343197565|pdb|3S1R|B Chain B, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Gtp
gi|343197577|pdb|3S2D|B Chain B, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
Containing A 5br- U
gi|343781198|pdb|3S2H|B Chain B, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
Containing A 2[prime]-Iodo Atp
gi|353251634|pdb|3J0K|B Chain B, Orientation Of Rna Polymerase Ii Within The Human
Vp16-Mediator-Pol Ii-Tfiif Assembly
gi|357380837|pdb|4A3C|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid
gi|359546291|pdb|4A3B|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid
gi|359546309|pdb|4A3D|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid
gi|359546326|pdb|4A3E|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546343|pdb|4A3F|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546360|pdb|4A3J|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid And Soaked With Gmpcpp
gi|359546377|pdb|4A3K|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid
gi|359546393|pdb|4A3L|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546410|pdb|4A3M|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|374977880|pdb|4A3G|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid
gi|374977895|pdb|4A3I|B Chain B, Rna Polymerase Ii Binary Complex With Dna
gi|380764980|pdb|4A93|B Chain B, Rna Polymerase Ii Elongation Complex Containing A Cpd
Lesion
gi|414145447|pdb|4BBR|B Chain B, Structure Of Rna Polymerase Ii-tfiib Complex
gi|414145460|pdb|4BBS|B Chain B, Structure Of An Initially Transcribing Rna Polymerase Ii-
Tfiib Complex
gi|1293711|gb|AAC49637.1| Rpb2p polymerase [Saccharomyces cerevisiae]
gi|1420379|emb|CAA99357.1| RPB2 [Saccharomyces cerevisiae]
gi|151945769|gb|EDN64010.1| RNA polymerase B [Saccharomyces cerevisiae YJM789]
gi|256272775|gb|EEU07746.1| Rpb2p [Saccharomyces cerevisiae JAY291]
gi|259149634|emb|CAY86438.1| Rpb2p [Saccharomyces cerevisiae EC1118]
gi|285815031|tpg|DAA10924.1| TPA: Rpb2p [Saccharomyces cerevisiae S288c]
gi|349581308|dbj|GAA26466.1| K7_Rpb2p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392296478|gb|EIW07580.1| Rpb2p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 1224
Score = 91.7 bits (226), Expect = 5e-17, Method: Composition-based stats.
Identities = 43/61 (70%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T SKRD ST LR++E GIVDQV++T N DG KF K+RVR+ +IPQIGDKFASRHGQKG
Sbjct: 929 TAYHSKRDASTPLRSTENGIVDQVLVTTNQDGLKFVKVRVRTTKIPQIGDKFASRHGQKG 988
Query: 67 T 67
T
Sbjct: 989 T 989
>gi|120561247|gb|ABM27008.1| RNA polymerase II second largest subunit, partial [Furculomyces
boomerangus]
Length = 906
Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 43/57 (75%), Positives = 49/57 (85%)
Query: 11 SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
+K D S LR++ETGIVDQVMLT N DG+KF K+RVRS R+PQIGDKFASRHGQKGT
Sbjct: 720 TKLDASKPLRSTETGIVDQVMLTTNGDGFKFVKVRVRSTRVPQIGDKFASRHGQKGT 776
>gi|89274902|gb|ABD65892.1| RNA polymerase II second largest subunit, partial [Sparassis
crispa]
Length = 900
Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST L+++E+GI+DQV++T N DG KF KIRVRS R+PQIGDKFASRHGQKG
Sbjct: 704 TRAHTKRDVSTPLKSTESGIIDQVLITTNADGQKFVKIRVRSTRVPQIGDKFASRHGQKG 763
Query: 67 T 67
T
Sbjct: 764 T 764
>gi|40643996|emb|CAD91515.1| RNA polymerase II second largest subunit [Hedera helix]
Length = 541
Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 42/62 (67%), Positives = 51/62 (82%)
Query: 6 TTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQK 65
R+++RD ST LR+SETG+VDQV+LT N DG +F K+RVRS RIP IGDKF+SRHGQK
Sbjct: 374 AASRYTRRDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSXRIPXIGDKFSSRHGQK 433
Query: 66 GT 67
GT
Sbjct: 434 GT 435
>gi|357216637|gb|AET71052.1| RNA polymerase II second largest subunit, partial [Trametes
elegans]
Length = 674
Score = 91.7 bits (226), Expect = 5e-17, Method: Composition-based stats.
Identities = 42/61 (68%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST L+++E+GI+DQV++T N +G KF KIRVRS RIPQIGDKFASRHGQKG
Sbjct: 519 TRTHTKRDVSTPLKSTESGIIDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKG 578
Query: 67 T 67
T
Sbjct: 579 T 579
>gi|45545345|gb|AAS67520.1| DNA-dependent RNA polymerase II second largest subunit, partial
[Pneumocystis carinii]
Length = 898
Score = 91.7 bits (226), Expect = 5e-17, Method: Composition-based stats.
Identities = 42/61 (68%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E+GI+DQVM++ N +G KF K+R+RS RIPQIGDKFASRHGQKG
Sbjct: 727 TKFHTKRDVSTPLRSTESGIIDQVMVSTNAEGLKFVKVRMRSTRIPQIGDKFASRHGQKG 786
Query: 67 T 67
T
Sbjct: 787 T 787
>gi|145307904|gb|ABP57256.1| RNA polymerase II second largest subunit, partial [Erynia conica]
Length = 246
Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 44/61 (72%), Positives = 53/61 (86%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ SKRD ST L+++ETGIVD+VMLT+N +G +F K+RVRS RIPQIGDKFASRHGQKG
Sbjct: 144 TRGHSKRDVSTPLKSTETGIVDRVMLTVNQEGMRFAKVRVRSTRIPQIGDKFASRHGQKG 203
Query: 67 T 67
T
Sbjct: 204 T 204
>gi|67810584|gb|AAY81999.1| RNA polymerase II second largest subunit [Chara australis]
Length = 329
Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 42/59 (71%), Positives = 51/59 (86%)
Query: 9 RFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
RF KRD ST LR+SE G++DQV+LT N +G +F K+RVRSVR+PQIGDKF+SRHGQKGT
Sbjct: 122 RFHKRDSSTVLRHSENGMIDQVLLTTNDEGLRFVKLRVRSVRVPQIGDKFSSRHGQKGT 180
>gi|172211|gb|AAA68096.1| RNA polymerase II 48 kd subunit [Saccharomyces cerevisiae]
Length = 1224
Score = 91.7 bits (226), Expect = 5e-17, Method: Composition-based stats.
Identities = 43/61 (70%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T SKRD ST LR++E GIVDQV++T N DG KF K+RVR+ +IPQIGDKFASRHGQKG
Sbjct: 929 TAYHSKRDASTPLRSTENGIVDQVLVTTNQDGLKFVKVRVRTTKIPQIGDKFASRHGQKG 988
Query: 67 T 67
T
Sbjct: 989 T 989
>gi|357216651|gb|AET71059.1| RNA polymerase II second largest subunit, partial [Coriolopsis
gallica]
Length = 657
Score = 91.7 bits (226), Expect = 5e-17, Method: Composition-based stats.
Identities = 43/61 (70%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST L+++E GIVDQV++T N +G KF KIRVRS RIPQIGDKFASRHGQKG
Sbjct: 520 TRTHTKRDVSTPLKSTEQGIVDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKG 579
Query: 67 T 67
T
Sbjct: 580 T 580
>gi|396941799|gb|AFN89617.1| RNA polymerase II, partial [Ogataea glucozyma]
Length = 774
Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR +E+GIVDQV+LT N +G KF K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 620 TKYHTKRDASTPLRTTESGIVDQVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKG 679
Query: 67 T 67
T
Sbjct: 680 T 680
>gi|50293059|ref|XP_448959.1| hypothetical protein [Candida glabrata CBS 138]
gi|51701949|sp|Q6FLD5.1|RPB2_CANGA RecName: Full=DNA-directed RNA polymerase II subunit RPB2;
Short=RNA polymerase II subunit 2; Short=RNA polymerase
II subunit B2
gi|49528272|emb|CAG61929.1| unnamed protein product [Candida glabrata]
Length = 1223
Score = 91.7 bits (226), Expect = 6e-17, Method: Composition-based stats.
Identities = 42/61 (68%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T SKRD ST LR++E GIVDQV++T N DG KF K+RVR+ ++PQIGDKFASRHGQKG
Sbjct: 928 TAYHSKRDASTPLRSTENGIVDQVLITTNQDGLKFVKVRVRTTKVPQIGDKFASRHGQKG 987
Query: 67 T 67
T
Sbjct: 988 T 988
>gi|357216665|gb|AET71066.1| RNA polymerase II second largest subunit, partial [Dentocorticium
sulphurellum]
Length = 592
Score = 91.7 bits (226), Expect = 6e-17, Method: Composition-based stats.
Identities = 43/61 (70%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST L+++E GIVDQV++T N +G KF KIRVRS RIPQIGDKFASRHGQKG
Sbjct: 521 TRTHTKRDVSTPLKSTEQGIVDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKG 580
Query: 67 T 67
T
Sbjct: 581 T 581
>gi|4867813|emb|CAB43067.1| RNA polymerase II [Gelsemium sempervirens]
Length = 236
Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 43/58 (74%), Positives = 49/58 (84%)
Query: 10 FSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
+ RD S LR+SETGIVDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHGQKGT
Sbjct: 1 YXNRDHSXXLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGT 58
>gi|366996268|ref|XP_003677897.1| hypothetical protein NCAS_0H02400 [Naumovozyma castellii CBS 4309]
gi|342303767|emb|CCC71550.1| hypothetical protein NCAS_0H02400 [Naumovozyma castellii CBS 4309]
Length = 1224
Score = 91.7 bits (226), Expect = 6e-17, Method: Composition-based stats.
Identities = 42/61 (68%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T SKRD ST LR++E GIVDQV++T N DG KF K+RVR+ ++PQIGDKFASRHGQKG
Sbjct: 929 TAYHSKRDASTPLRSTENGIVDQVLITTNQDGLKFVKVRVRTTKVPQIGDKFASRHGQKG 988
Query: 67 T 67
T
Sbjct: 989 T 989
>gi|6606119|gb|AAF19072.1|AF107800_1 DNA-dependent RNA polymerase II RPB140 [Dothidea insculpta]
gi|82706467|gb|ABB89611.1| RNA polymerase II second largest subunit, partial [Dothidea
insculpta]
Length = 936
Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK KRD ST LR++E+GI+DQV+LT N+DG+KF K+R R+ +IPQIGDKFASRHGQKG
Sbjct: 735 TKLHVKRDVSTPLRSTESGIIDQVLLTTNIDGHKFVKVRTRTTKIPQIGDKFASRHGQKG 794
Query: 67 T 67
T
Sbjct: 795 T 795
>gi|258562146|gb|ACV81795.1| RNA polymerase II second largest subunit [Wallemia sebi]
Length = 680
Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 43/61 (70%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST L+++E GIVDQV++T N DG KF K+R+RS RIPQIGDKFASRHGQKG
Sbjct: 493 TKLHTKRDVSTPLKSTENGIVDQVLVTTNADGLKFSKVRMRSTRIPQIGDKFASRHGQKG 552
Query: 67 T 67
T
Sbjct: 553 T 553
>gi|56694340|gb|AAW22910.1| RNA polymerase II second largest subunit [Saxegothaea conspicua]
Length = 526
Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 41/59 (69%), Positives = 53/59 (89%)
Query: 9 RFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
++++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVRIPQIGDKF+SRHGQKGT
Sbjct: 353 KYTRRDQSTSLRHSESGMVDQVLLTTNQDGLRFVKVRMRSVRIPQIGDKFSSRHGQKGT 411
>gi|89274898|gb|ABD65890.1| RNA polymerase II second largest subunit, partial [Polyporus
squamosus]
Length = 898
Score = 91.7 bits (226), Expect = 6e-17, Method: Composition-based stats.
Identities = 43/61 (70%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST L+++E GIVDQV++T N +G KF KIRVRS RIPQIGDKFASRHGQKG
Sbjct: 701 TRTHTKRDVSTPLKSTEQGIVDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKG 760
Query: 67 T 67
T
Sbjct: 761 T 761
>gi|357216625|gb|AET71046.1| RNA polymerase II second largest subunit, partial [Trametes
villosa]
Length = 641
Score = 91.3 bits (225), Expect = 6e-17, Method: Composition-based stats.
Identities = 42/61 (68%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST L+++E GI+DQV++T N +G KF KIRVRS RIPQIGDKFASRHGQKG
Sbjct: 520 TRTHTKRDVSTPLKSTEQGIIDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKG 579
Query: 67 T 67
T
Sbjct: 580 T 580
>gi|365984393|ref|XP_003669029.1| hypothetical protein NDAI_0C01250 [Naumovozyma dairenensis CBS 421]
gi|343767797|emb|CCD23786.1| hypothetical protein NDAI_0C01250 [Naumovozyma dairenensis CBS 421]
Length = 1227
Score = 91.3 bits (225), Expect = 6e-17, Method: Composition-based stats.
Identities = 42/61 (68%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T SKRD ST LR++E GIVDQV++T N DG KF K+RVR+ ++PQIGDKFASRHGQKG
Sbjct: 932 TAYHSKRDASTPLRSTENGIVDQVLITTNQDGLKFVKVRVRTTKVPQIGDKFASRHGQKG 991
Query: 67 T 67
T
Sbjct: 992 T 992
>gi|254581920|ref|XP_002496945.1| ZYRO0D11770p [Zygosaccharomyces rouxii]
gi|238939837|emb|CAR28012.1| ZYRO0D11770p [Zygosaccharomyces rouxii]
Length = 1224
Score = 91.3 bits (225), Expect = 6e-17, Method: Composition-based stats.
Identities = 42/61 (68%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T SKRD ST LR++E GIVDQ+++T N DG KF K+RVR+ +IPQIGDKFASRHGQKG
Sbjct: 929 TAYHSKRDASTPLRSTENGIVDQILITTNQDGLKFVKVRVRTTKIPQIGDKFASRHGQKG 988
Query: 67 T 67
T
Sbjct: 989 T 989
>gi|396941795|gb|AFN89615.1| RNA polymerase II, partial [Ogataea angusta]
Length = 786
Score = 91.3 bits (225), Expect = 6e-17, Method: Composition-based stats.
Identities = 41/61 (67%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR +E+GIVDQV+LT N +G KF K+R+R+ ++PQIGDKFASRHGQKG
Sbjct: 632 TKYHTKRDASTPLRTTESGIVDQVLLTTNAEGLKFAKVRMRTTKVPQIGDKFASRHGQKG 691
Query: 67 T 67
T
Sbjct: 692 T 692
>gi|56694338|gb|AAW22909.1| RNA polymerase II second largest subunit [Podocarpus coriaceus]
Length = 514
Score = 91.3 bits (225), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 41/59 (69%), Positives = 53/59 (89%)
Query: 9 RFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
++++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVRIPQIGDKF+SRHGQKGT
Sbjct: 350 KYTRRDQSTSLRHSESGMVDQVLLTTNQDGLRFVKVRMRSVRIPQIGDKFSSRHGQKGT 408
>gi|367008806|ref|XP_003678904.1| hypothetical protein TDEL_0A03610 [Torulaspora delbrueckii]
gi|359746561|emb|CCE89693.1| hypothetical protein TDEL_0A03610 [Torulaspora delbrueckii]
Length = 1222
Score = 91.3 bits (225), Expect = 6e-17, Method: Composition-based stats.
Identities = 42/61 (68%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T SKRD ST LR++E GIVDQV++T N DG KF K+RVR+ ++PQIGDKFASRHGQKG
Sbjct: 927 TAYHSKRDASTPLRSTENGIVDQVLITTNQDGLKFVKVRVRTTKVPQIGDKFASRHGQKG 986
Query: 67 T 67
T
Sbjct: 987 T 987
>gi|357216621|gb|AET71044.1| RNA polymerase II second largest subunit, partial [Trametes
suaveolens]
Length = 631
Score = 91.3 bits (225), Expect = 6e-17, Method: Composition-based stats.
Identities = 42/61 (68%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST L+++E GI+DQV++T N +G KF KIRVRS RIPQIGDKFASRHGQKG
Sbjct: 520 TRTHTKRDVSTPLKSTEQGIIDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKG 579
Query: 67 T 67
T
Sbjct: 580 T 580
>gi|258562148|gb|ACV81796.1| RNA polymerase II second largest subunit [Entorrhiza casparyana]
Length = 646
Score = 91.3 bits (225), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 43/61 (70%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E GIVDQVM+T N +G KF K+RVRS R+PQ+GDKFASRHGQKG
Sbjct: 485 TKTHTKRDVSTPLRSTENGIVDQVMITTNGEGLKFVKVRVRSTRVPQVGDKFASRHGQKG 544
Query: 67 T 67
T
Sbjct: 545 T 545
>gi|213408763|ref|XP_002175152.1| DNA-directed RNA polymerase II complex subunit Rpb2
[Schizosaccharomyces japonicus yFS275]
gi|212003199|gb|EEB08859.1| DNA-directed RNA polymerase II complex subunit Rpb2
[Schizosaccharomyces japonicus yFS275]
Length = 1210
Score = 91.3 bits (225), Expect = 6e-17, Method: Composition-based stats.
Identities = 43/61 (70%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST LR++E+GIVDQVM+T N +G KF K+R+RS RIPQIGDKFASRHGQKG
Sbjct: 918 TQLHAKRDVSTPLRSTESGIVDQVMVTTNQEGLKFVKVRMRSTRIPQIGDKFASRHGQKG 977
Query: 67 T 67
T
Sbjct: 978 T 978
>gi|45545307|gb|AAS67501.1| DNA-dependent RNA polymerase II second largest subunit, partial
[Candida glabrata]
Length = 885
Score = 91.3 bits (225), Expect = 7e-17, Method: Composition-based stats.
Identities = 42/61 (68%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T SKRD ST LR++E GIVDQV++T N DG KF K+RVR+ ++PQIGDKFASRHGQKG
Sbjct: 721 TAYHSKRDASTPLRSTENGIVDQVLITTNQDGLKFVKVRVRTTKVPQIGDKFASRHGQKG 780
Query: 67 T 67
T
Sbjct: 781 T 781
>gi|396941823|gb|AFN89629.1| RNA polymerase II, partial [Saccharomyces cerevisiae]
Length = 770
Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 43/61 (70%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T SKRD ST LR++E GIVDQV++T N DG KF K+RVR+ +IPQIGDKFASRHGQKG
Sbjct: 619 TAYHSKRDASTPLRSTENGIVDQVLVTTNQDGLKFVKVRVRTTKIPQIGDKFASRHGQKG 678
Query: 67 T 67
T
Sbjct: 679 T 679
>gi|357216647|gb|AET71057.1| RNA polymerase II second largest subunit, partial [Earliella
scabrosa]
Length = 658
Score = 91.3 bits (225), Expect = 7e-17, Method: Composition-based stats.
Identities = 43/61 (70%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST L+++E GIVDQV++T N +G KF KIRVRS RIPQIGDKFASRHGQKG
Sbjct: 519 TRTHTKRDVSTPLKSTEQGIVDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKG 578
Query: 67 T 67
T
Sbjct: 579 T 579
>gi|120561265|gb|ABM27017.1| RNA polymerase II second largest subunit, partial [Coelomomyces
stegomyiae]
Length = 862
Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 45/63 (71%), Positives = 51/63 (80%)
Query: 5 GTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQ 64
GT +K+D ST L++SE GIVD VM+T N DGYKF KIRVRS R+PQIGDKFASRHGQ
Sbjct: 705 GTRTTQTKKDVSTGLKSSENGIVDHVMVTTNGDGYKFVKIRVRSTRVPQIGDKFASRHGQ 764
Query: 65 KGT 67
KGT
Sbjct: 765 KGT 767
>gi|358030894|dbj|BAL15356.1| RNA polymerase II second largest subunit, partial [Olpidium
bornovanus]
Length = 895
Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 42/57 (73%), Positives = 50/57 (87%)
Query: 11 SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
+KRD ST L+++ETGIVDQVM+T N +G KF K+RVRS R+PQIGDKFASRHGQKGT
Sbjct: 724 TKRDASTPLKSTETGIVDQVMVTTNSEGLKFVKVRVRSTRVPQIGDKFASRHGQKGT 780
>gi|326436004|gb|EGD81574.1| DNA-directed RNA polymerase II polypeptide [Salpingoeca sp. ATCC
50818]
Length = 1193
Score = 91.3 bits (225), Expect = 7e-17, Method: Composition-based stats.
Identities = 41/59 (69%), Positives = 47/59 (79%)
Query: 9 RFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
RF K D S FLR SE GI+DQVM+ + G +F KIRVRS+R+PQIGDKFASRHGQKGT
Sbjct: 902 RFEKLDKSVFLRASENGIIDQVMVAMGPKGTRFVKIRVRSIRVPQIGDKFASRHGQKGT 960
>gi|88976165|gb|ABD59040.1| RNA polymerase II second largest subunit, partial [Megacollybia
platyphylla]
Length = 558
Score = 91.3 bits (225), Expect = 7e-17, Method: Composition-based stats.
Identities = 41/61 (67%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ ++RD ST L+++E GIVDQV++T N +G KF K+RVRS+RIPQIGDKFASRHGQKG
Sbjct: 399 TRTHTRRDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSIRIPQIGDKFASRHGQKG 458
Query: 67 T 67
T
Sbjct: 459 T 459
>gi|401884833|gb|EJT48974.1| DNA-directed RNA polymerase II subunit RPB2 [Trichosporon asahii
var. asahii CBS 2479]
Length = 1732
Score = 91.3 bits (225), Expect = 7e-17, Method: Composition-based stats.
Identities = 40/57 (70%), Positives = 49/57 (85%)
Query: 11 SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
+KRD ST ++++E G+VDQVM+T N DG KF KIR+RS R+PQIGDKFASRHGQKGT
Sbjct: 924 TKRDVSTPMKSTEQGVVDQVMITTNADGLKFVKIRIRSTRVPQIGDKFASRHGQKGT 980
>gi|396941813|gb|AFN89624.1| RNA polymerase II, partial [Cyniclomyces guttulatus]
Length = 753
Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T SKRD ST LR++E GI+DQV++T N DG KF K+RVR+ +IPQIGDKFASRHGQKG
Sbjct: 607 TAYHSKRDASTPLRSTENGIIDQVLITTNQDGLKFVKVRVRTTKIPQIGDKFASRHGQKG 666
Query: 67 T 67
T
Sbjct: 667 T 667
>gi|55831375|gb|AAV66546.1| RNA polymerase II second largest subunit [Lactarius deceptivus]
Length = 557
Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 44/61 (72%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ S+RD ST L+++E GIVDQV++T N DG KF KIRVRS RIPQIGDKFASRHGQKG
Sbjct: 389 TRTHSRRDVSTPLKSTENGIVDQVLITTNSDGQKFVKIRVRSPRIPQIGDKFASRHGQKG 448
Query: 67 T 67
T
Sbjct: 449 T 449
>gi|406694356|gb|EKC97684.1| DNA-directed RNA polymerase II subunit RPB2 [Trichosporon asahii var.
asahii CBS 8904]
Length = 1757
Score = 91.3 bits (225), Expect = 7e-17, Method: Composition-based stats.
Identities = 40/57 (70%), Positives = 49/57 (85%)
Query: 11 SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
+KRD ST ++++E G+VDQVM+T N DG KF KIR+RS R+PQIGDKFASRHGQKGT
Sbjct: 949 TKRDVSTPMKSTEQGVVDQVMITTNADGLKFVKIRIRSTRVPQIGDKFASRHGQKGT 1005
>gi|357216631|gb|AET71049.1| RNA polymerase II second largest subunit, partial [Trametes
sanguinea]
Length = 658
Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 43/61 (70%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST L+++E+GIVDQV++T N +G KF KIRVRS RIPQIGDKFASRHGQKG
Sbjct: 519 TRTHTKRDVSTPLKSTESGIVDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKG 578
Query: 67 T 67
T
Sbjct: 579 T 579
>gi|396941801|gb|AFN89618.1| RNA polymerase II, partial [Ogataea minuta]
Length = 785
Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR +E+GIVDQV+LT N +G KF K+R+R+ ++PQIGDKFASRHGQKG
Sbjct: 631 TKYHTKRDASTPLRTTESGIVDQVLLTTNAEGLKFAKVRMRTTKVPQIGDKFASRHGQKG 690
Query: 67 T 67
T
Sbjct: 691 T 691
>gi|52699792|gb|AAU86958.1| DNA-dependent RNA polymerase II second largest subunit [Calicium
viride]
Length = 714
Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK SKRD ST LR++E+G+VDQV+LT N +G +F K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 538 TKYHSKRDASTPLRSTESGLVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKG 597
Query: 67 T 67
T
Sbjct: 598 T 598
>gi|146418277|ref|XP_001485104.1| hypothetical protein PGUG_02833 [Meyerozyma guilliermondii ATCC 6260]
Length = 1291
Score = 91.3 bits (225), Expect = 7e-17, Method: Composition-based stats.
Identities = 41/61 (67%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST LR++E+GIVDQV+LT N DG KF K+R+R+ ++PQIGDKFASRHGQKG
Sbjct: 993 TQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKVRMRTTKVPQIGDKFASRHGQKG 1052
Query: 67 T 67
T
Sbjct: 1053 T 1053
>gi|357216627|gb|AET71047.1| RNA polymerase II second largest subunit, partial [Trametes
polyzona]
Length = 605
Score = 91.3 bits (225), Expect = 7e-17, Method: Composition-based stats.
Identities = 42/61 (68%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST L+++E GI+DQV++T N +G KF KIRVRS RIPQIGDKFASRHGQKG
Sbjct: 520 TRTHTKRDVSTPLKSTEQGIIDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKG 579
Query: 67 T 67
T
Sbjct: 580 T 580
>gi|94410940|gb|ABF18588.1| RNA polymerase II second largest subunit, partial [Inocephalus sp.
GD-b]
Length = 546
Score = 91.3 bits (225), Expect = 7e-17, Method: Composition-based stats.
Identities = 41/61 (67%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ ++RD ST L+++E+G+VDQV++T N DG KF K+RVRS RIPQIGDKFASRHGQKG
Sbjct: 399 TRTHTRRDVSTPLKSTESGMVDQVLITTNSDGQKFVKVRVRSTRIPQIGDKFASRHGQKG 458
Query: 67 T 67
T
Sbjct: 459 T 459
>gi|83415487|gb|ABC17951.1| RNA polymerase II second largest subunit, partial [Rhizophlyctis
rosea]
Length = 719
Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 42/57 (73%), Positives = 51/57 (89%)
Query: 11 SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
+KRD ST L+++E GIVDQV+LT N +G+KF K+RVRSVRIPQ+GDKFASRHGQKGT
Sbjct: 522 TKRDSSTPLKSTENGIVDQVILTTNGEGFKFVKVRVRSVRIPQMGDKFASRHGQKGT 578
>gi|300394692|gb|ADK11884.1| DNA-directed RNA polymerase II subunit two, partial [Coniophora
arida var. suffocata]
Length = 686
Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ ++RDGST L+++E GIVDQV++T N +G KF K+RVRS RIPQIGDKFASRHGQKG
Sbjct: 528 TRTHTRRDGSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKG 587
Query: 67 T 67
T
Sbjct: 588 T 588
>gi|190346609|gb|EDK38735.2| hypothetical protein PGUG_02833 [Meyerozyma guilliermondii ATCC 6260]
Length = 1291
Score = 91.3 bits (225), Expect = 7e-17, Method: Composition-based stats.
Identities = 41/61 (67%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST LR++E+GIVDQV+LT N DG KF K+R+R+ ++PQIGDKFASRHGQKG
Sbjct: 993 TQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKVRMRTTKVPQIGDKFASRHGQKG 1052
Query: 67 T 67
T
Sbjct: 1053 T 1053
>gi|83415501|gb|ABC17958.1| RNA polymerase II second largest subunit, partial [Boothiomyces
macroporosum]
Length = 714
Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T +KRD ST L+++E GIVD VM+T N DG+KF K+R+RS+RIPQ+GDKFASRHGQKG
Sbjct: 513 TVNHTKRDASTPLKSTENGIVDNVMVTTNQDGFKFVKVRIRSIRIPQMGDKFASRHGQKG 572
Query: 67 T 67
T
Sbjct: 573 T 573
>gi|396941887|gb|AFN89661.1| RNA polymerase II, partial [Scheffersomyces stipitis]
Length = 783
Score = 91.3 bits (225), Expect = 7e-17, Method: Composition-based stats.
Identities = 42/61 (68%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST LR++E+GIVDQV+LT N DG KF K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 629 TQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKVRMRTTKIPQIGDKFASRHGQKG 688
Query: 67 T 67
T
Sbjct: 689 T 689
>gi|357216623|gb|AET71045.1| RNA polymerase II second largest subunit, partial [Trametes
hirsuta]
Length = 657
Score = 91.3 bits (225), Expect = 7e-17, Method: Composition-based stats.
Identities = 42/61 (68%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST L+++E GI+DQV++T N +G KF KIRVRS RIPQIGDKFASRHGQKG
Sbjct: 520 TRTHTKRDVSTPLKSTEQGIIDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKG 579
Query: 67 T 67
T
Sbjct: 580 T 580
>gi|83415495|gb|ABC17955.1| RNA polymerase II second largest subunit precursor, partial
[Spiromyces aspiralis]
Length = 1058
Score = 91.3 bits (225), Expect = 8e-17, Method: Composition-based stats.
Identities = 43/67 (64%), Positives = 51/67 (76%)
Query: 1 MHLEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFAS 60
+ L TK +K D S LR++E GIVD+VMLT N DG +F K+RVRS R+PQIGDKFAS
Sbjct: 516 LELGQRTKNHTKLDASKPLRSTEHGIVDRVMLTTNADGIRFVKVRVRSTRVPQIGDKFAS 575
Query: 61 RHGQKGT 67
RHGQKGT
Sbjct: 576 RHGQKGT 582
>gi|89274900|gb|ABD65891.1| RNA polymerase II second largest subunit, partial [Pycnoporus sp.
ZW02.30]
Length = 896
Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 43/61 (70%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST L+++E+GIVDQV++T N +G KF KIRVRS RIPQIGDKFASRHGQKG
Sbjct: 700 TRTHTKRDVSTPLKSTESGIVDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKG 759
Query: 67 T 67
T
Sbjct: 760 T 760
>gi|396941827|gb|AFN89631.1| RNA polymerase II, partial [Naumovozyma dairenensis]
Length = 775
Score = 90.9 bits (224), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T SKRD ST LR++E GIVDQV++T N DG KF K+RVR+ ++PQIGDKFASRHGQKG
Sbjct: 621 TAYHSKRDASTPLRSTENGIVDQVLITTNQDGLKFVKVRVRTTKVPQIGDKFASRHGQKG 680
Query: 67 T 67
T
Sbjct: 681 T 681
>gi|357216641|gb|AET71054.1| RNA polymerase II second largest subunit, partial [Trametes aff.
maxima FPRI101]
Length = 663
Score = 90.9 bits (224), Expect = 8e-17, Method: Composition-based stats.
Identities = 42/61 (68%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST L+++E GI+DQV++T N +G KF KIRVRS RIPQIGDKFASRHGQKG
Sbjct: 525 TRTHTKRDVSTPLKSTEQGIIDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKG 584
Query: 67 T 67
T
Sbjct: 585 T 585
>gi|357216617|gb|AET71042.1| RNA polymerase II second largest subunit, partial [Trametes
pubescens]
Length = 508
Score = 90.9 bits (224), Expect = 8e-17, Method: Composition-based stats.
Identities = 42/61 (68%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST L+++E GI+DQV++T N +G KF KIRVRS RIPQIGDKFASRHGQKG
Sbjct: 370 TRTHTKRDVSTPLKSTEQGIIDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKG 429
Query: 67 T 67
T
Sbjct: 430 T 430
>gi|120561245|gb|ABM27007.1| RNA polymerase II second largest subunit, partial [Capniomyces
stellatus]
Length = 924
Score = 90.9 bits (224), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 43/57 (75%), Positives = 49/57 (85%)
Query: 11 SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
+K D S LR++ETGIVDQVMLT N DG+KF K+R+RS RIPQIGDKFASRHGQKGT
Sbjct: 727 TKLDASKPLRSTETGIVDQVMLTTNGDGFKFVKVRMRSTRIPQIGDKFASRHGQKGT 783
>gi|396941821|gb|AFN89628.1| RNA polymerase II, partial [Zygosaccharomyces rouxii]
Length = 773
Score = 90.9 bits (224), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T SKRD ST LR++E GIVDQ+++T N DG KF K+RVR+ +IPQIGDKFASRHGQKG
Sbjct: 619 TAYHSKRDASTPLRSTENGIVDQILITTNQDGLKFVKVRVRTTKIPQIGDKFASRHGQKG 678
Query: 67 T 67
T
Sbjct: 679 T 679
>gi|92090856|gb|ABE73204.1| RNA polymerase II second largest subunit [Resinicium bicolor]
Length = 551
Score = 90.9 bits (224), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 43/61 (70%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST L+++E+GIVDQV++T N DG KF K+RVRS RIPQIGDKFASRHGQKG
Sbjct: 390 TRTHTKRDVSTPLKSTESGIVDQVLITTNHDGQKFVKVRVRSTRIPQIGDKFASRHGQKG 449
Query: 67 T 67
T
Sbjct: 450 T 450
>gi|388582011|gb|EIM22317.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Wallemia sebi CBS 633.66]
Length = 1198
Score = 90.9 bits (224), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 43/61 (70%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST L+++E GIVDQV++T N DG KF K+R+RS RIPQIGDKFASRHGQKG
Sbjct: 901 TKLHTKRDVSTPLKSTENGIVDQVLVTTNADGLKFSKVRMRSTRIPQIGDKFASRHGQKG 960
Query: 67 T 67
T
Sbjct: 961 T 961
>gi|145307909|gb|ABP57258.1| RNA polymerase II second largest subunit, partial [Erynia sciarae]
Length = 261
Score = 90.9 bits (224), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 43/61 (70%), Positives = 53/61 (86%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST L+++ETGIVD+VMLT+N +G +F K+RVRS RIPQIGDKFASRHGQKG
Sbjct: 150 TRGHTKRDVSTPLKSTETGIVDRVMLTINQEGMRFAKVRVRSTRIPQIGDKFASRHGQKG 209
Query: 67 T 67
T
Sbjct: 210 T 210
>gi|320582153|gb|EFW96371.1| DNA-directed RNA polymerase II [Ogataea parapolymorpha DL-1]
Length = 1275
Score = 90.9 bits (224), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR +E+GIVDQV+LT N +G KF K+R+R+ ++PQIGDKFASRHGQKG
Sbjct: 978 TKYHTKRDASTPLRTTESGIVDQVLLTTNAEGLKFAKVRMRTTKVPQIGDKFASRHGQKG 1037
Query: 67 T 67
T
Sbjct: 1038 T 1038
>gi|357216615|gb|AET71041.1| RNA polymerase II second largest subunit, partial [Trametes
versicolor]
Length = 639
Score = 90.9 bits (224), Expect = 8e-17, Method: Composition-based stats.
Identities = 42/61 (68%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST L+++E GI+DQV++T N +G KF KIRVRS RIPQIGDKFASRHGQKG
Sbjct: 501 TRTHTKRDVSTPLKSTEQGIIDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKG 560
Query: 67 T 67
T
Sbjct: 561 T 561
>gi|145307876|gb|ABP57243.1| RNA polymerase II second largest subunit, partial [Pandora
dipterigena]
Length = 263
Score = 90.9 bits (224), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 43/61 (70%), Positives = 53/61 (86%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST L+++ETGIVD+VMLT+N +G +F K+RVRS RIPQIGDKFASRHGQKG
Sbjct: 152 TRGHTKRDVSTPLKSTETGIVDRVMLTINQEGMRFAKVRVRSTRIPQIGDKFASRHGQKG 211
Query: 67 T 67
T
Sbjct: 212 T 212
>gi|312204314|gb|ADQ47474.1| RNA polymerase II second largest subunit [Cryptodiscus foveolaris]
Length = 704
Score = 90.9 bits (224), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E GIVD+V+LT N DG KF K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 553 TKLHTKRDASTPLRSTENGIVDKVLLTTNADGLKFVKVRMRTTKIPQIGDKFASRHGQKG 612
Query: 67 T 67
T
Sbjct: 613 T 613
>gi|394998899|gb|AFN44368.1| RNA polymerase II second largest subunit, partial [Physcia dubia]
Length = 312
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E+G+VDQV+LT N +G KF K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 149 TKLHTKRDASTPLRSTESGLVDQVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKG 208
Query: 67 T 67
T
Sbjct: 209 T 209
>gi|396941819|gb|AFN89627.1| RNA polymerase II, partial [Zygotorulaspora mrakii]
Length = 771
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T SKRD ST LR++E GIVDQV++T N DG KF K+RVR+ ++PQIGDKFASRHGQKG
Sbjct: 617 TAYHSKRDASTPLRSTENGIVDQVLITTNQDGLKFVKVRVRTTKVPQIGDKFASRHGQKG 676
Query: 67 T 67
T
Sbjct: 677 T 677
>gi|190333344|gb|AAS67502.2| DNA-dependent RNA polymerase II second largest subunit, partial
[Meyerozyma guilliermondii]
Length = 1219
Score = 90.9 bits (224), Expect = 9e-17, Method: Composition-based stats.
Identities = 41/61 (67%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST LR++E+GIVDQV+LT N DG KF K+R+R+ ++PQIGDKFASRHGQKG
Sbjct: 938 TQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKVRMRTTKVPQIGDKFASRHGQKG 997
Query: 67 T 67
T
Sbjct: 998 T 998
>gi|83415483|gb|ABC17949.1| RNA polymerase II second largest subunit, partial [Mortierella
verticillata]
Length = 721
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 44/61 (72%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T SK D ST LR++ETGIVDQVMLT N +G KF K+RVRS R+PQ+GDKFASRHGQKG
Sbjct: 520 TGSHSKLDASTPLRSTETGIVDQVMLTTNHEGVKFVKVRVRSTRVPQMGDKFASRHGQKG 579
Query: 67 T 67
T
Sbjct: 580 T 580
>gi|396941879|gb|AFN89657.1| RNA polymerase II, partial [Priceomyces castillae]
Length = 777
Score = 90.9 bits (224), Expect = 9e-17, Method: Composition-based stats.
Identities = 42/61 (68%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST LR++E+GIVDQV+LT N DG KF K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 623 TQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKVRMRTTKIPQIGDKFASRHGQKG 682
Query: 67 T 67
T
Sbjct: 683 T 683
>gi|145307878|gb|ABP57244.1| RNA polymerase II second largest subunit, partial [Erynia ovispora]
Length = 252
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 43/61 (70%), Positives = 53/61 (86%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST L+++ETGIVD+VMLT+N +G +F K+RVRS RIPQIGDKFASRHGQKG
Sbjct: 141 TRGHTKRDVSTPLKSTETGIVDRVMLTINQEGMRFAKVRVRSTRIPQIGDKFASRHGQKG 200
Query: 67 T 67
T
Sbjct: 201 T 201
>gi|396941831|gb|AFN89633.1| RNA polymerase II, partial [Vanderwaltozyma polyspora]
Length = 775
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T SKRD ST LR++E GIVDQV++T N DG KF K+RVR+ ++PQIGDKFASRHGQKG
Sbjct: 621 TAYHSKRDASTPLRSTENGIVDQVLITTNQDGLKFVKVRVRTTKVPQIGDKFASRHGQKG 680
Query: 67 T 67
T
Sbjct: 681 T 681
>gi|145307906|gb|ABP57257.1| RNA polymerase II second largest subunit, partial [Erynia
rhizospora]
Length = 261
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 43/61 (70%), Positives = 53/61 (86%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST L+++ETGIVD+VMLT+N +G +F K+RVRS RIPQIGDKFASRHGQKG
Sbjct: 150 TRGHTKRDVSTPLKSTETGIVDRVMLTINQEGMRFAKVRVRSTRIPQIGDKFASRHGQKG 209
Query: 67 T 67
T
Sbjct: 210 T 210
>gi|120561275|gb|ABM27022.1| RNA polymerase II second largest subunit, partial [Neocallimastix
frontalis]
Length = 915
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 43/61 (70%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST LR++ETGIVD+V++T N DG KF K+RVRS RIPQ+GDKFASRHGQKG
Sbjct: 714 TEHHTKRDASTPLRSTETGIVDRVLVTNNQDGMKFVKVRVRSTRIPQMGDKFASRHGQKG 773
Query: 67 T 67
T
Sbjct: 774 T 774
>gi|396941869|gb|AFN89652.1| RNA polymerase II, partial [Lodderomyces elongisporus]
Length = 784
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST LR++E+GIVDQV+LT N DG KF K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 630 TQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKVRMRTTKIPQIGDKFASRHGQKG 689
Query: 67 T 67
T
Sbjct: 690 T 690
>gi|145307882|gb|ABP57245.1| RNA polymerase II second largest subunit, partial [Pandora
delphacis]
Length = 249
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 43/61 (70%), Positives = 53/61 (86%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST L+++ETGIVD+VMLT+N +G +F K+RVRS RIPQIGDKFASRHGQKG
Sbjct: 144 TRGHTKRDVSTPLKSTETGIVDRVMLTINQEGMRFAKVRVRSTRIPQIGDKFASRHGQKG 203
Query: 67 T 67
T
Sbjct: 204 T 204
>gi|396941877|gb|AFN89656.1| RNA polymerase II, partial [Priceomyces haplophilus]
Length = 774
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST LR++E+GIVDQV+LT N DG KF K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 620 TQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKVRMRTTKIPQIGDKFASRHGQKG 679
Query: 67 T 67
T
Sbjct: 680 T 680
>gi|145307886|gb|ABP57247.1| RNA polymerase II second largest subunit, partial [Pandora
delphacis]
Length = 260
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 43/61 (70%), Positives = 53/61 (86%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST L+++ETGIVD+VMLT+N +G +F K+RVRS RIPQIGDKFASRHGQKG
Sbjct: 150 TRGHTKRDVSTPLKSTETGIVDRVMLTINQEGMRFAKVRVRSTRIPQIGDKFASRHGQKG 209
Query: 67 T 67
T
Sbjct: 210 T 210
>gi|110734396|gb|ABG88853.1| RNA polymerase II second largest subunit [Rhamphospora nymphaeae]
Length = 645
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
+K SKRD ST L+++E GIVDQV++T N DG KF K+RVRS R+PQ+GDKFASRHGQKG
Sbjct: 528 SKTHSKRDVSTPLKSTEAGIVDQVLVTTNADGNKFVKVRVRSTRVPQVGDKFASRHGQKG 587
Query: 67 T 67
T
Sbjct: 588 T 588
>gi|400364957|gb|AFP85963.1| DNA-directed RNA polymerase II second largest subunit, partial
[Erynia ovispora]
Length = 250
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 43/61 (70%), Positives = 53/61 (86%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST L+++ETGIVD+VMLT+N +G +F K+RVRS RIPQIGDKFASRHGQKG
Sbjct: 142 TRGHTKRDVSTPLKSTETGIVDRVMLTINQEGMRFAKVRVRSTRIPQIGDKFASRHGQKG 201
Query: 67 T 67
T
Sbjct: 202 T 202
>gi|392580422|gb|EIW73549.1| hypothetical protein TREMEDRAFT_70991 [Tremella mesenterica DSM
1558]
Length = 1214
Score = 90.9 bits (224), Expect = 9e-17, Method: Composition-based stats.
Identities = 42/61 (68%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T +KRD ST L+++E G+VDQVML+ N DG+KF KIR+RS R+PQIGDKFASRHGQKG
Sbjct: 923 TSLHTKRDVSTPLKSTEQGVVDQVMLSTNGDGHKFVKIRIRSTRVPQIGDKFASRHGQKG 982
Query: 67 T 67
T
Sbjct: 983 T 983
>gi|320172588|gb|ADW24177.1| RNA polymerase II second largest subunit [Gloeophyllum trabeum]
Length = 648
Score = 90.9 bits (224), Expect = 9e-17, Method: Composition-based stats.
Identities = 41/61 (67%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ ++RD ST L+++E+GIVDQV++T N +G KF K+RVRS RIPQIGDKFASRHGQKG
Sbjct: 487 TRSHTRRDVSTALKSTESGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKG 546
Query: 67 T 67
T
Sbjct: 547 T 547
>gi|110666973|gb|ABG81887.1| RNA polymerase II second largest subunit [Physcia aipolia]
Length = 718
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E+G+VDQV+LT N +G KF K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 544 TKLHTKRDASTPLRSTESGLVDQVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKG 603
Query: 67 T 67
T
Sbjct: 604 T 604
>gi|392571043|gb|EIW64215.1| DNA-dependent RNA polymerase II second largest subunit [Trametes
versicolor FP-101664 SS1]
Length = 1231
Score = 90.9 bits (224), Expect = 9e-17, Method: Composition-based stats.
Identities = 42/61 (68%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST L+++E GI+DQV++T N +G KF KIRVRS RIPQIGDKFASRHGQKG
Sbjct: 935 TRTHTKRDVSTPLKSTEQGIIDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKG 994
Query: 67 T 67
T
Sbjct: 995 T 995
>gi|444313813|ref|XP_004177564.1| hypothetical protein TBLA_0A02460 [Tetrapisispora blattae CBS 6284]
gi|387510603|emb|CCH58045.1| hypothetical protein TBLA_0A02460 [Tetrapisispora blattae CBS 6284]
Length = 1236
Score = 90.9 bits (224), Expect = 9e-17, Method: Composition-based stats.
Identities = 41/61 (67%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T SKRD ST LR++E GI+DQV++T N DG KF K+RVR+ ++PQIGDKFASRHGQKG
Sbjct: 941 TAYHSKRDASTPLRSTENGIIDQVLITTNQDGLKFVKVRVRTTKVPQIGDKFASRHGQKG 1000
Query: 67 T 67
T
Sbjct: 1001 T 1001
>gi|396941865|gb|AFN89650.1| RNA polymerase II, partial [Hyphopichia heimii]
Length = 783
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST LR++E+GIVDQV+LT N DG KF K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 629 TQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKVRMRTTKIPQIGDKFASRHGQKG 688
Query: 67 T 67
T
Sbjct: 689 T 689
>gi|410079905|ref|XP_003957533.1| hypothetical protein KAFR_0E02450 [Kazachstania africana CBS 2517]
gi|372464119|emb|CCF58398.1| hypothetical protein KAFR_0E02450 [Kazachstania africana CBS 2517]
Length = 1222
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T SKRD ST LR++E GIVDQV++T N DG KF K+RVR+ ++PQIGDKFASRHGQKG
Sbjct: 927 TAYHSKRDASTPLRSTENGIVDQVLITTNQDGLKFVKVRVRTTKVPQIGDKFASRHGQKG 986
Query: 67 T 67
T
Sbjct: 987 T 987
>gi|396941825|gb|AFN89630.1| RNA polymerase II, partial [Torulaspora delbrueckii]
Length = 773
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T SKRD ST LR++E GIVDQV++T N DG KF K+RVR+ ++PQIGDKFASRHGQKG
Sbjct: 619 TAYHSKRDASTPLRSTENGIVDQVLITTNQDGLKFVKVRVRTTKVPQIGDKFASRHGQKG 678
Query: 67 T 67
T
Sbjct: 679 T 679
>gi|396941807|gb|AFN89621.1| RNA polymerase II, partial [Kuraishia capsulata]
Length = 780
Score = 90.9 bits (224), Expect = 9e-17, Method: Composition-based stats.
Identities = 42/61 (68%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E GIVDQV+LT N +G KF K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 626 TKYHTKRDASTPLRSTENGIVDQVLLTTNQEGLKFVKVRMRTTKIPQIGDKFASRHGQKG 685
Query: 67 T 67
T
Sbjct: 686 T 686
>gi|145307894|gb|ABP57251.1| RNA polymerase II second largest subunit, partial [Furia pieris]
Length = 249
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 43/61 (70%), Positives = 53/61 (86%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST L+++ETGIVD+VMLT+N +G +F K+RVRS RIPQIGDKFASRHGQKG
Sbjct: 141 TRGHTKRDVSTPLKSTETGIVDRVMLTINQEGMRFAKVRVRSTRIPQIGDKFASRHGQKG 200
Query: 67 T 67
T
Sbjct: 201 T 201
>gi|396941875|gb|AFN89655.1| RNA polymerase II, partial [Kurtzmaniella cleridarum]
Length = 781
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST LR++E+GIVDQV+LT N DG KF K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 627 TQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKVRMRTTKIPQIGDKFASRHGQKG 686
Query: 67 T 67
T
Sbjct: 687 T 687
>gi|219564033|gb|ACL28200.1| RNA polymerase II second largest subunit, partial [Mniaecia
jungermanniae]
Length = 287
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK SKRD ST LR++E GIVDQV++T N +G +F K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 140 TKSHSKRDASTALRSTENGIVDQVLITTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKG 199
Query: 67 T 67
T
Sbjct: 200 T 200
>gi|396941895|gb|AFN89665.1| RNA polymerase II, partial [Yamadazyma philogaea]
Length = 782
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST LR++E+GIVDQV+LT N DG KF K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 628 TQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKVRMRTTKIPQIGDKFASRHGQKG 687
Query: 67 T 67
T
Sbjct: 688 T 688
>gi|396941857|gb|AFN89646.1| RNA polymerase II, partial [Clavispora lusitaniae]
Length = 783
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST LR++E+GIVDQV+LT N DG KF K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 629 TQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKVRMRTTKIPQIGDKFASRHGQKG 688
Query: 67 T 67
T
Sbjct: 689 T 689
>gi|396941897|gb|AFN89666.1| RNA polymerase II, partial [Yamadazyma mexicana]
Length = 783
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST LR++E+GIVDQV+LT N DG KF K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 629 TQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKVRMRTTKIPQIGDKFASRHGQKG 688
Query: 67 T 67
T
Sbjct: 689 T 689
>gi|396941891|gb|AFN89663.1| RNA polymerase II, partial [Millerozyma farinosa]
Length = 782
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST LR++E+GIVDQV+LT N DG KF K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 628 TQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKVRMRTTKIPQIGDKFASRHGQKG 687
Query: 67 T 67
T
Sbjct: 688 T 688
>gi|357216643|gb|AET71055.1| RNA polymerase II second largest subunit, partial [Trametes maxima]
Length = 676
Score = 90.9 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 42/61 (68%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST L+++E GI+DQV++T N +G KF KIRVRS RIPQIGDKFASRHGQKG
Sbjct: 525 TRTHTKRDVSTPLKSTEQGIIDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKG 584
Query: 67 T 67
T
Sbjct: 585 T 585
>gi|357216613|gb|AET71040.1| RNA polymerase II second largest subunit, partial [Trametes
conchifer]
Length = 679
Score = 90.9 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 42/61 (68%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST L+++E GI+DQV++T N +G KF KIRVRS RIPQIGDKFASRHGQKG
Sbjct: 525 TRTHTKRDVSTPLKSTEQGIIDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKG 584
Query: 67 T 67
T
Sbjct: 585 T 585
>gi|357216611|gb|AET71039.1| RNA polymerase II second largest subunit, partial [Trametes ectypa]
Length = 680
Score = 90.9 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 42/61 (68%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST L+++E GI+DQV++T N +G KF KIRVRS RIPQIGDKFASRHGQKG
Sbjct: 525 TRTHTKRDVSTPLKSTEQGIIDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKG 584
Query: 67 T 67
T
Sbjct: 585 T 585
>gi|396941881|gb|AFN89658.1| RNA polymerase II, partial [Debaryomyces hansenii]
Length = 781
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST LR++E+GIVDQV+LT N DG KF K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 627 TQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKVRMRTTKIPQIGDKFASRHGQKG 686
Query: 67 T 67
T
Sbjct: 687 T 687
>gi|312204362|gb|ADQ47498.1| RNA polymerase II second largest subunit [Porina lectissima]
Length = 604
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E GIVD+V+LT N DG KF K+R+R+ ++PQIGDKFASRHGQKG
Sbjct: 449 TKLHTKRDASTPLRSTENGIVDKVLLTTNADGLKFVKVRMRTTKVPQIGDKFASRHGQKG 508
Query: 67 T 67
T
Sbjct: 509 T 509
>gi|113957175|gb|ABI49105.1| RNA polymerase II second largest subunit [Heterodermia vulgaris]
Length = 698
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E+G+VDQV+LT N +G KF K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 534 TKLHTKRDASTPLRSTESGLVDQVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKG 593
Query: 67 T 67
T
Sbjct: 594 T 594
>gi|56694336|gb|AAW22908.1| RNA polymerase II second largest subunit [Dacrydium cupressinum]
Length = 498
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/59 (67%), Positives = 53/59 (89%)
Query: 9 RFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
++++RD ST LR+SE+G+VDQV+LT N DG +F K+R+RSVR+PQIGDKF+SRHGQKGT
Sbjct: 337 KYTRRDQSTSLRHSESGMVDQVLLTTNQDGLRFVKVRMRSVRVPQIGDKFSSRHGQKGT 395
>gi|82706473|gb|ABB89614.1| RNA polymerase II second largest subunit, partial [Pyronema
domesticum]
Length = 594
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/64 (68%), Positives = 53/64 (82%), Gaps = 1/64 (1%)
Query: 5 GTTKRF-SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
G ++F +KRD ST LR++E GIVDQVMLT N DG KF K+R+R+ +IPQIGDKFASRHG
Sbjct: 510 GQRQKFHTKRDVSTPLRSTENGIVDQVMLTTNADGLKFVKVRMRTTKIPQIGDKFASRHG 569
Query: 64 QKGT 67
QKGT
Sbjct: 570 QKGT 573
>gi|357216661|gb|AET71064.1| RNA polymerase II second largest subunit, partial [Datronia
scutellata]
Length = 674
Score = 90.5 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 42/61 (68%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ ++RD ST L+++E GIVDQV++T N +G KF KIRVRS RIPQIGDKFASRHGQKG
Sbjct: 519 TRTHTRRDVSTPLKSTEQGIVDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKG 578
Query: 67 T 67
T
Sbjct: 579 T 579
>gi|312204316|gb|ADQ47475.1| RNA polymerase II second largest subunit [Cryptodiscus gloeocapsa]
Length = 708
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E GIVD+V+LT N DG KF K+R+R+ +IPQ+GDKFASRHGQKG
Sbjct: 553 TKLHTKRDASTPLRSTENGIVDKVLLTTNADGLKFVKVRMRTTKIPQVGDKFASRHGQKG 612
Query: 67 T 67
T
Sbjct: 613 T 613
>gi|260944180|ref|XP_002616388.1| hypothetical protein CLUG_03629 [Clavispora lusitaniae ATCC 42720]
gi|238850037|gb|EEQ39501.1| hypothetical protein CLUG_03629 [Clavispora lusitaniae ATCC 42720]
Length = 858
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST LR++E+GIVDQV+LT N DG KF K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 560 TQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKVRMRTTKIPQIGDKFASRHGQKG 619
Query: 67 T 67
T
Sbjct: 620 T 620
>gi|396941817|gb|AFN89626.1| RNA polymerase II, partial [Nakaseomyces delphensis]
Length = 763
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T SKRD ST LR++E GIVDQV++T N DG KF K+RVR+ ++PQIGDKFASRHGQKG
Sbjct: 609 TAYHSKRDASTPLRSTENGIVDQVLVTTNQDGLKFVKVRVRTTKVPQIGDKFASRHGQKG 668
Query: 67 T 67
T
Sbjct: 669 T 669
>gi|156835986|ref|XP_001642238.1| hypothetical protein Kpol_186p2 [Vanderwaltozyma polyspora DSM
70294]
gi|156112711|gb|EDO14380.1| hypothetical protein Kpol_186p2 [Vanderwaltozyma polyspora DSM
70294]
Length = 1223
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T SKRD ST LR++E GIVDQV++T N DG KF K+RVR+ ++PQIGDKFASRHGQKG
Sbjct: 928 TAYHSKRDASTPLRSTENGIVDQVLITTNQDGLKFVKVRVRTTKVPQIGDKFASRHGQKG 987
Query: 67 T 67
T
Sbjct: 988 T 988
>gi|83415503|gb|ABC17959.1| RNA polymerase II second largest subunit, partial [Rhizophagus
intraradices]
Length = 764
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/57 (70%), Positives = 50/57 (87%)
Query: 11 SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
++RD ST +R++ETGIVDQVM+T N +G KF K+RVRS R+PQ+GDKFASRHGQKGT
Sbjct: 567 TQRDASTPMRSTETGIVDQVMVTTNAEGMKFVKVRVRSTRVPQMGDKFASRHGQKGT 623
>gi|118152119|gb|ABK63802.1| RNA polymerase II second largest subunit [Cheilymenia stercorea]
Length = 521
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/64 (68%), Positives = 53/64 (82%), Gaps = 1/64 (1%)
Query: 5 GTTKRF-SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
G ++F +KRD ST LR++E GIVDQVMLT N DG KF K+R+R+ +IPQIGDKFASRHG
Sbjct: 440 GQRQKFHTKRDVSTPLRSTENGIVDQVMLTTNADGLKFVKVRMRTTKIPQIGDKFASRHG 499
Query: 64 QKGT 67
QKGT
Sbjct: 500 QKGT 503
>gi|50549809|ref|XP_502376.1| YALI0D03718p [Yarrowia lipolytica]
gi|49648244|emb|CAG80564.1| YALI0D03718p [Yarrowia lipolytica CLIB122]
Length = 1229
Score = 90.5 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 41/61 (67%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E GIVDQV+LT N +G +F K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 931 TKYHTKRDASTPLRSTENGIVDQVLLTTNQEGLRFVKVRMRTTKIPQIGDKFASRHGQKG 990
Query: 67 T 67
T
Sbjct: 991 T 991
>gi|396941907|gb|AFN89671.1| RNA polymerase II, partial [Citeromyces matritensis]
Length = 784
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E+GIVDQV+LT N DG KF K+R+R+ ++PQIGDKFASRHGQKG
Sbjct: 630 TKFHTKRDASTPLRSTESGIVDQVLLTTNHDGVKFVKVRMRTTKVPQIGDKFASRHGQKG 689
Query: 67 T 67
T
Sbjct: 690 T 690
>gi|150951109|ref|XP_001387366.2| DNA-dependent RNA polymerase II [Scheffersomyces stipitis CBS 6054]
gi|149388327|gb|EAZ63343.2| DNA-dependent RNA polymerase II [Scheffersomyces stipitis CBS 6054]
Length = 1232
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST LR++E+GIVDQV+LT N DG KF K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 934 TQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKVRMRTTKIPQIGDKFASRHGQKG 993
Query: 67 T 67
T
Sbjct: 994 T 994
>gi|396941815|gb|AFN89625.1| RNA polymerase II, partial [Tetrapisispora phaffii]
Length = 775
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T SKRD ST LR++E GIVDQV++T N DG KF K+RVR+ ++PQIGDKFASRHGQKG
Sbjct: 621 TAYHSKRDASTPLRSTENGIVDQVLVTTNQDGLKFVKVRVRTTKVPQIGDKFASRHGQKG 680
Query: 67 T 67
T
Sbjct: 681 T 681
>gi|294659491|ref|XP_002770594.1| DEHA2G07502p [Debaryomyces hansenii CBS767]
gi|199434003|emb|CAR65929.1| DEHA2G07502p [Debaryomyces hansenii CBS767]
Length = 1232
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST LR++E+GIVDQV+LT N DG KF K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 934 TQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKVRMRTTKIPQIGDKFASRHGQKG 993
Query: 67 T 67
T
Sbjct: 994 T 994
>gi|149244118|ref|XP_001526602.1| DNA-directed RNA polymerase II polypeptide 2 [Lodderomyces
elongisporus NRRL YB-4239]
gi|146448996|gb|EDK43252.1| DNA-directed RNA polymerase II polypeptide 2 [Lodderomyces
elongisporus NRRL YB-4239]
Length = 1238
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST LR++E+GIVDQV+LT N DG KF K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 940 TQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKVRMRTTKIPQIGDKFASRHGQKG 999
Query: 67 T 67
T
Sbjct: 1000 T 1000
>gi|448117721|ref|XP_004203325.1| Piso0_000931 [Millerozyma farinosa CBS 7064]
gi|359384193|emb|CCE78897.1| Piso0_000931 [Millerozyma farinosa CBS 7064]
Length = 1233
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST LR++E+GIVDQV+LT N DG KF K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 935 TQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKVRMRTTKIPQIGDKFASRHGQKG 994
Query: 67 T 67
T
Sbjct: 995 T 995
>gi|357216629|gb|AET71048.1| RNA polymerase II second largest subunit, partial [Trametes
membranacea]
Length = 658
Score = 90.5 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 42/61 (68%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST L+++E+GI+DQV++T N +G KF KIRVRS RIPQIGDKFASRHGQKG
Sbjct: 520 TRTHTKRDVSTPLKSTESGIIDQVLITTNNEGQKFVKIRVRSTRIPQIGDKFASRHGQKG 579
Query: 67 T 67
T
Sbjct: 580 T 580
>gi|258562150|gb|ACV81797.1| RNA polymerase II second largest subunit [Sebacina incrustans]
Length = 581
Score = 90.5 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 39/57 (68%), Positives = 51/57 (89%)
Query: 11 SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
++RD ST L+++E+GIVD V+++LN DG++F KIRVRS R+PQIGDKFASRHGQKGT
Sbjct: 477 TRRDVSTPLKSTESGIVDHVIVSLNADGHRFVKIRVRSTRVPQIGDKFASRHGQKGT 533
>gi|365758370|gb|EHN00218.1| Rpb2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 1224
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T SKRD ST LR++E GIVDQV++T N DG KF K+RVR+ ++PQIGDKFASRHGQKG
Sbjct: 929 TAYHSKRDASTPLRSTENGIVDQVLVTTNQDGLKFVKVRVRTTKVPQIGDKFASRHGQKG 988
Query: 67 T 67
T
Sbjct: 989 T 989
>gi|89274888|gb|ABD65885.1| RNA polymerase II second largest subunit, partial [Rickenella
fibula]
Length = 657
Score = 90.5 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 41/61 (67%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ ++RD ST L+++E+GIVDQV++T N +G KF K+RVRS RIPQIGDKFASRHGQKG
Sbjct: 492 TRTHTRRDVSTPLKSTESGIVDQVLVTTNSEGQKFVKVRVRSARIPQIGDKFASRHGQKG 551
Query: 67 T 67
T
Sbjct: 552 T 552
>gi|320172580|gb|ADW24173.1| RNA polymerase II second largest subunit [Donkioporia expansa]
Length = 683
Score = 90.5 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 42/61 (68%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST L+++E GIVDQV++T N +G KF KIRVRS R+PQIGDKFASRHGQKG
Sbjct: 529 TRTHTKRDVSTPLKSTEQGIVDQVLITTNAEGQKFVKIRVRSTRVPQIGDKFASRHGQKG 588
Query: 67 T 67
T
Sbjct: 589 T 589
>gi|169125448|gb|ACA48206.1| RNA polymerase II second largest subunit [Melastiza cornubiensis]
Length = 481
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/64 (68%), Positives = 53/64 (82%), Gaps = 1/64 (1%)
Query: 5 GTTKRF-SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
G ++F +KRD ST LR++E GIVDQVMLT N DG KF K+R+R+ +IPQIGDKFASRHG
Sbjct: 353 GQRQKFHTKRDVSTPLRSTENGIVDQVMLTTNADGLKFVKVRMRTTKIPQIGDKFASRHG 412
Query: 64 QKGT 67
QKGT
Sbjct: 413 QKGT 416
>gi|148628038|gb|ABQ97024.1| RNA polymerase II second largest subunit [Phialophora verrucosa]
Length = 318
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/60 (68%), Positives = 52/60 (86%)
Query: 8 KRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
K+ KRD ST LR++E+GIVDQVML+ N +GY+F K+RVR+ ++PQIGDKFASRHGQKGT
Sbjct: 151 KQHIKRDVSTPLRSTESGIVDQVMLSTNSEGYRFAKVRVRTTKVPQIGDKFASRHGQKGT 210
>gi|408717403|gb|AFU52873.1| DNA-dependent RNA polymerase II second largest subunit, partial
[Sphaeropezia sp. EB-2012b]
Length = 705
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E+GIVD+V+LT N +G KF K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 549 TKLHTKRDASTPLRSTESGIVDKVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKG 608
Query: 67 T 67
T
Sbjct: 609 T 609
>gi|401623583|gb|EJS41677.1| rpb2p [Saccharomyces arboricola H-6]
Length = 1224
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T SKRD ST LR++E GIVDQV++T N DG KF K+RVR+ ++PQIGDKFASRHGQKG
Sbjct: 929 TAYHSKRDASTPLRSTENGIVDQVLVTTNQDGLKFVKVRVRTTKVPQIGDKFASRHGQKG 988
Query: 67 T 67
T
Sbjct: 989 T 989
>gi|367005628|ref|XP_003687546.1| hypothetical protein TPHA_0J02910 [Tetrapisispora phaffii CBS 4417]
gi|357525850|emb|CCE65112.1| hypothetical protein TPHA_0J02910 [Tetrapisispora phaffii CBS 4417]
Length = 1224
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T SKRD ST LR++E GIVDQV++T N DG KF K+RVR+ ++PQIGDKFASRHGQKG
Sbjct: 929 TAYHSKRDASTPLRSTENGIVDQVLVTTNQDGLKFVKVRVRTTKVPQIGDKFASRHGQKG 988
Query: 67 T 67
T
Sbjct: 989 T 989
>gi|218554|dbj|BAA02600.1| RNA polymerase II second largest subunit [Schizosaccharomyces
pombe]
Length = 1210
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/61 (70%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST LR++E+GIVDQVM+T N +G KF K+R+RS RIPQIGDKFASRHGQKG
Sbjct: 918 TQLHAKRDVSTPLRSTESGIVDQVMVTTNQEGLKFVKVRMRSTRIPQIGDKFASRHGQKG 977
Query: 67 T 67
T
Sbjct: 978 T 978
>gi|219564075|gb|ACL28221.1| RNA polymerase II second largest subunit, partial [Bryochiton
monascus]
Length = 284
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 49/61 (80%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK KRD ST LR++E GIVDQV+LT N +G KF KIR R+ ++PQIGDKFASRHGQKG
Sbjct: 137 TKMHVKRDASTPLRSTENGIVDQVLLTTNTEGLKFVKIRTRTTKVPQIGDKFASRHGQKG 196
Query: 67 T 67
T
Sbjct: 197 T 197
>gi|403214331|emb|CCK68832.1| hypothetical protein KNAG_0B03910 [Kazachstania naganishii CBS
8797]
Length = 1220
Score = 90.5 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 41/61 (67%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T SKRD ST LR++E GI+DQV++T N DG KF K+RVR+ ++PQIGDKFASRHGQKG
Sbjct: 925 TAYHSKRDASTPLRSTENGIIDQVLVTTNQDGLKFVKVRVRTTKVPQIGDKFASRHGQKG 984
Query: 67 T 67
T
Sbjct: 985 T 985
>gi|357216649|gb|AET71058.1| RNA polymerase II second largest subunit, partial [Coriolopsis
trogii]
Length = 646
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/61 (70%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST L+++E GIVDQV++T N +G KF KIRVRS RIPQIGDKFASRHGQKG
Sbjct: 507 TRTHTKRDVSTPLKSTEQGIVDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKG 566
Query: 67 T 67
T
Sbjct: 567 T 567
>gi|45545313|gb|AAS67504.1| DNA-dependent RNA polymerase II second largest subunit, partial
[Candida tropicalis]
Length = 1020
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/61 (70%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T SKRD ST LR++E+GIVDQV+LT N DG KF K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 739 TLHHSKRDASTPLRSTESGIVDQVLLTTNGDGSKFVKVRMRTTKIPQIGDKFASRHGQKG 798
Query: 67 T 67
T
Sbjct: 799 T 799
>gi|63054498|ref|NP_593101.2| RNA polymerase II complex subunit Rpb2 [Schizosaccharomyces pombe
972h-]
gi|19862286|sp|Q02061.2|RPB2_SCHPO RecName: Full=DNA-directed RNA polymerase II subunit RPB2;
Short=RNA polymerase II subunit 2; Short=RNA polymerase
II subunit B2; AltName: Full=DNA-directed RNA polymerase
II 138 kDa polypeptide
gi|256599716|pdb|3H0G|B Chain B, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|256599728|pdb|3H0G|N Chain N, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|159883907|emb|CAB86470.2| RNA polymerase II complex subunit Rpb2 [Schizosaccharomyces pombe]
Length = 1210
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/61 (70%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST LR++E+GIVDQVM+T N +G KF K+R+RS RIPQIGDKFASRHGQKG
Sbjct: 918 TQLHAKRDVSTPLRSTESGIVDQVMVTTNQEGLKFVKVRMRSTRIPQIGDKFASRHGQKG 977
Query: 67 T 67
T
Sbjct: 978 T 978
>gi|312204296|gb|ADQ47465.1| RNA polymerase II second largest subunit [Absconditella sp. SW048]
Length = 292
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E+GIVD+V+LT N +G KF K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 137 TKMHTKRDASTPLRSTESGIVDKVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKG 196
Query: 67 T 67
T
Sbjct: 197 T 197
>gi|255730467|ref|XP_002550158.1| DNA-directed RNA polymerase II 140 kDa polypeptide [Candida
tropicalis MYA-3404]
gi|240132115|gb|EER31673.1| DNA-directed RNA polymerase II 140 kDa polypeptide [Candida
tropicalis MYA-3404]
Length = 1240
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/61 (70%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T SKRD ST LR++E+GIVDQV+LT N DG KF K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 942 TLHHSKRDASTPLRSTESGIVDQVLLTTNGDGSKFVKVRMRTTKIPQIGDKFASRHGQKG 1001
Query: 67 T 67
T
Sbjct: 1002 T 1002
>gi|145307888|gb|ABP57248.1| RNA polymerase II second largest subunit, partial [Eryniopsis
caroliniana]
Length = 245
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/57 (73%), Positives = 51/57 (89%)
Query: 11 SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
+KRD ST L+++ETGIVD+VMLT+N +G +F K+RVRS RIPQIGDKFASRHGQKGT
Sbjct: 147 TKRDVSTPLKSTETGIVDRVMLTINQEGMRFAKVRVRSTRIPQIGDKFASRHGQKGT 203
>gi|396941853|gb|AFN89644.1| RNA polymerase II, partial [Kodamaea ohmeri]
Length = 766
Score = 90.1 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 42/61 (68%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST LR +E+GIVDQV+LT N DG KF K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 612 TQYHTKRDASTPLRATESGIVDQVLLTTNGDGAKFVKVRMRTTKIPQIGDKFASRHGQKG 671
Query: 67 T 67
T
Sbjct: 672 T 672
>gi|312204350|gb|ADQ47492.1| RNA polymerase II second largest subunit [Odontotrema sp. 2
EB-2010]
Length = 707
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E+GIVD+V+LT N +G KF K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 552 TKLHTKRDASTPLRSTESGIVDKVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKG 611
Query: 67 T 67
T
Sbjct: 612 T 612
>gi|396941861|gb|AFN89648.1| RNA polymerase II, partial [Metschnikowia bicuspidata]
Length = 781
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST LR++E+GIVDQV+LT N DG KF K+R+R+ ++PQIGDKFASRHGQKG
Sbjct: 627 TQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKVRMRTTKVPQIGDKFASRHGQKG 686
Query: 67 T 67
T
Sbjct: 687 T 687
>gi|55273999|gb|AAV48870.1| RNA polymerase II second largest subunit [Climacodon
septentrionalis]
Length = 886
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 53/61 (86%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T++ ++RD ST L+++E+GI+DQV++T N +G KF KIRVRS RIPQIGDKFASRHGQKG
Sbjct: 693 TRQHTRRDVSTPLKSTESGIIDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKG 752
Query: 67 T 67
T
Sbjct: 753 T 753
>gi|396941893|gb|AFN89664.1| RNA polymerase II, partial [Meyerozyma guilliermondii]
Length = 786
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST LR++E+GIVDQV+LT N DG KF K+R+R+ ++PQIGDKFASRHGQKG
Sbjct: 632 TQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKVRMRTTKVPQIGDKFASRHGQKG 691
Query: 67 T 67
T
Sbjct: 692 T 692
>gi|312204342|gb|ADQ47488.1| RNA polymerase II second largest subunit [Odontotrema diffindens]
Length = 706
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E+GIVD+V+LT N +G KF K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 551 TKLHTKRDASTPLRSTESGIVDKVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKG 610
Query: 67 T 67
T
Sbjct: 611 T 611
>gi|110734400|gb|ABG88855.1| RNA polymerase II second largest subunit [Mrakia frigida]
Length = 705
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/57 (73%), Positives = 49/57 (85%)
Query: 11 SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
+KRD ST L+++E GIVDQV++T N DG KF KIRVRS R+PQIGDKFASRHGQKGT
Sbjct: 545 TKRDVSTPLKSTEQGIVDQVLVTTNADGLKFVKIRVRSTRVPQIGDKFASRHGQKGT 601
>gi|56694286|gb|AAW22883.1| RNA polymerase II second largest subunit [Botrychium virginianum]
Length = 488
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/61 (63%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
+RF+KRD T LR+SE+G+VDQV+LT N DG +F K+R+R +R+PQIGDKF+ RHGQKG
Sbjct: 323 AQRFTKRDQXTCLRHSESGMVDQVLLTTNADGLRFVKVRMRXIRVPQIGDKFSXRHGQKG 382
Query: 67 T 67
T
Sbjct: 383 T 383
>gi|396941863|gb|AFN89649.1| RNA polymerase II, partial [Hyphopichia burtonii]
Length = 783
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST LR++E+GIVDQV+LT N DG KF K+R+R+ ++PQIGDKFASRHGQKG
Sbjct: 629 TQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKVRMRTTKVPQIGDKFASRHGQKG 688
Query: 67 T 67
T
Sbjct: 689 T 689
>gi|94410920|gb|ABF18579.1| RNA polymerase II second largest subunit, partial [Hemimycena
gracilis]
Length = 689
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 53/61 (86%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ ++RD ST L+++E+G+VDQV++T N DG KF K+RVRS+R+PQIGDKFASRHGQKG
Sbjct: 519 TRMHTRRDVSTPLKSTESGVVDQVLITTNSDGQKFVKVRVRSIRVPQIGDKFASRHGQKG 578
Query: 67 T 67
T
Sbjct: 579 T 579
>gi|93278283|gb|ABF06597.1| RNA polymerase II second largest subunit, partial [Baeospora
myosura]
Length = 690
Score = 90.1 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 42/61 (68%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ ++RD ST L+++E GIVDQV++T N +G KF KIRVRS RIPQIGDKFASRHGQKG
Sbjct: 520 TRTHTRRDVSTPLKSTENGIVDQVLITTNSEGQKFVKIRVRSTRIPQIGDKFASRHGQKG 579
Query: 67 T 67
T
Sbjct: 580 T 580
>gi|89274890|gb|ABD65886.1| RNA polymerase II second largest subunit, partial [Ganoderma
tsugae]
Length = 883
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/61 (70%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST L+++E GIVDQV++T N +G KF KIRVRS RIPQIGDKFASRHGQKG
Sbjct: 694 TRTHTKRDVSTPLKSTEQGIVDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKG 753
Query: 67 T 67
T
Sbjct: 754 T 754
>gi|45545311|gb|AAS67503.1| DNA-dependent RNA polymerase II second largest subunit, partial
[Candida parapsilosis]
Length = 892
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST LR++E+GIVDQV+LT N DG KF K+R+R+ ++PQIGDKFASRHGQKG
Sbjct: 729 TQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKVRMRTTKVPQIGDKFASRHGQKG 788
Query: 67 T 67
T
Sbjct: 789 T 789
>gi|88976107|gb|ABD59032.1| RNA polymerase II second largest subunit, partial [Cantharocybe
gruberi]
Length = 675
Score = 90.1 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 41/61 (67%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ ++RD ST L+++E+GIVDQV++T N +G KF K+RVRS RIPQIGDKFASRHGQKG
Sbjct: 519 TRTHTRRDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKG 578
Query: 67 T 67
T
Sbjct: 579 T 579
>gi|258562136|gb|ACV81790.1| RNA polymerase II second largest subunit [Termitomyces poonensis]
Length = 664
Score = 90.1 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 41/61 (67%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ ++RD ST L+++E+GIVDQV++T N +G KF K+RVRS RIPQIGDKFASRHGQKG
Sbjct: 491 TRTHTRRDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKG 550
Query: 67 T 67
T
Sbjct: 551 T 551
>gi|219564043|gb|ACL28205.1| RNA polymerase II second largest subunit, partial [Cheilymenia
vitellina]
Length = 287
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/57 (73%), Positives = 49/57 (85%)
Query: 11 SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
+KRD ST LR++E GIVDQVMLT N DG KF K+R+R+ +IPQIGDKFASRHGQKGT
Sbjct: 144 TKRDVSTPLRSTENGIVDQVMLTTNADGLKFVKVRMRTTKIPQIGDKFASRHGQKGT 200
>gi|396941883|gb|AFN89659.1| RNA polymerase II, partial [Schwanniomyces occidentalis]
Length = 776
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST LR++E+GIVDQV+LT N DG KF K+R+R+ ++PQIGDKFASRHGQKG
Sbjct: 622 TQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKVRMRTTKVPQIGDKFASRHGQKG 681
Query: 67 T 67
T
Sbjct: 682 T 682
>gi|396941845|gb|AFN89640.1| RNA polymerase II, partial [Saturnispora dispora]
Length = 764
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR +E GIVDQV+LT N +G KF K+R+R+ ++PQIGDKFASRHGQKG
Sbjct: 610 TKYHTKRDASTPLRTTENGIVDQVLLTTNAEGLKFVKVRMRTTKVPQIGDKFASRHGQKG 669
Query: 67 T 67
T
Sbjct: 670 T 670
>gi|300394740|gb|ADK11908.1| DNA-directed RNA polymerase II subunit two, partial [Paragyrodon
sphaerosporus]
Length = 547
Score = 90.1 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 40/61 (65%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ ++RD ST L+++E+GIVDQV++T N +G KF K+RVRS R+PQIGDKFASRHGQKG
Sbjct: 401 TRTHTRRDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRSTRVPQIGDKFASRHGQKG 460
Query: 67 T 67
T
Sbjct: 461 T 461
>gi|219564073|gb|ACL28220.1| RNA polymerase II second largest subunit, partial [Bryochiton
perpusillus]
Length = 287
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 49/61 (80%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK KRD ST LR++E GIVDQV+LT N +G KF KIR R+ ++PQIGDKFASRHGQKG
Sbjct: 140 TKLHVKRDASTPLRSTENGIVDQVLLTTNTEGLKFVKIRTRTTKVPQIGDKFASRHGQKG 199
Query: 67 T 67
T
Sbjct: 200 T 200
>gi|46451692|gb|AAS97969.1| RNA polymerase II [Cladonia caroliniana]
Length = 642
Score = 90.1 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 41/61 (67%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK KRD ST LR++E GIVDQV+L+ N DG +F K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 539 TKLHVKRDASTPLRSTENGIVDQVVLSTNADGLRFAKVRMRTTKIPQIGDKFASRHGQKG 598
Query: 67 T 67
T
Sbjct: 599 T 599
>gi|347728887|gb|AEP20103.1| RNA polymerase II second largest subunit [Lecidea cyrtidia]
Length = 268
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/56 (71%), Positives = 49/56 (87%)
Query: 12 KRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
KRD ST LR++E GIVDQV+L+ N +G KFCK+R+R+ +IPQIGDKFASRHGQKGT
Sbjct: 119 KRDASTPLRSTENGIVDQVLLSTNSEGAKFCKVRMRTTKIPQIGDKFASRHGQKGT 174
>gi|312204368|gb|ADQ47501.1| RNA polymerase II second largest subunit [Stictis brunnescens]
Length = 696
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E+G+VD+VMLT N +G KF K+R R+ +IPQIGDKFASRHGQKG
Sbjct: 535 TKLHTKRDASTPLRSTESGLVDKVMLTTNAEGLKFVKVRTRTTKIPQIGDKFASRHGQKG 594
Query: 67 T 67
T
Sbjct: 595 T 595
>gi|119644276|gb|ABL85616.1| RNA polymerase II second largest subunit [uncultured Ascomycota]
Length = 326
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK SKRD ST LR++E GIVDQV++T N +G +F K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 152 TKAHSKRDASTPLRSTENGIVDQVLITTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKG 211
Query: 67 T 67
T
Sbjct: 212 T 212
>gi|396941829|gb|AFN89632.1| RNA polymerase II, partial [Kazachstania viticola]
Length = 771
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T SKRD ST LR++E GI+DQV++T N DG KF K+RVR+ ++PQIGDKFASRHGQKG
Sbjct: 619 TAYHSKRDASTPLRSTENGIIDQVLVTTNQDGLKFVKVRVRTTKVPQIGDKFASRHGQKG 678
Query: 67 T 67
T
Sbjct: 679 T 679
>gi|70906409|gb|AAZ14928.1| DNA-dependent RNA polymerase II second largest subunit [Coprinellus
disseminatus]
Length = 1241
Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 41/61 (67%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ ++RD ST L+++E GIVDQV++T N +G KF K+RVRS RIPQIGDKFASRHGQKG
Sbjct: 945 TRAHTRRDVSTPLKSTENGIVDQVLITTNAEGQKFVKVRVRSTRIPQIGDKFASRHGQKG 1004
Query: 67 T 67
T
Sbjct: 1005 T 1005
>gi|396941899|gb|AFN89667.1| RNA polymerase II, partial [Yamadazyma scolyti]
Length = 783
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST LR++E+GIVDQV+LT N DG KF K+R+R+ ++PQIGDKFASRHGQKG
Sbjct: 629 TQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKVRMRTTKVPQIGDKFASRHGQKG 688
Query: 67 T 67
T
Sbjct: 689 T 689
>gi|396941803|gb|AFN89619.1| RNA polymerase II, partial [Ambrosiozyma monospora]
Length = 785
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR +E GIVDQV+LT N +G KF K+R+R+ ++PQIGDKFASRHGQKG
Sbjct: 631 TKYHTKRDASTPLRTTENGIVDQVLLTTNAEGLKFVKVRMRTTKVPQIGDKFASRHGQKG 690
Query: 67 T 67
T
Sbjct: 691 T 691
>gi|6606131|gb|AAF19078.1|AF107806_1 DNA-dependent RNA polymerase II RPB140, partial [Microglossum
viride]
Length = 938
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK SKRD ST LR++E GIVDQV++T N +G +F K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 737 TKAHSKRDASTPLRSTENGIVDQVLITTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKG 796
Query: 67 T 67
T
Sbjct: 797 T 797
>gi|241898907|gb|ACS71537.1| RNA polymerase II subunit [Spathularia velutipes]
Length = 614
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E GIVDQV+LT N DG +F K+R+R+ + PQIGDKFASRHGQKG
Sbjct: 524 TKAHTKRDASTPLRSTENGIVDQVLLTTNADGLRFVKVRMRTTKXPQIGDKFASRHGQKG 583
Query: 67 T 67
T
Sbjct: 584 T 584
>gi|396941849|gb|AFN89642.1| RNA polymerase II, partial [Kregervanrija fluxuum]
Length = 785
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR +E GIVDQV+LT N +G KF K+R+R+ ++PQIGDKFASRHGQKG
Sbjct: 631 TKYHTKRDASTPLRTTENGIVDQVLLTTNAEGLKFVKVRMRTTKVPQIGDKFASRHGQKG 690
Query: 67 T 67
T
Sbjct: 691 T 691
>gi|448519935|ref|XP_003868181.1| RNA polymerase II subunit B150 [Candida orthopsilosis Co 90-125]
gi|380352520|emb|CCG22746.1| RNA polymerase II subunit B150 [Candida orthopsilosis]
Length = 1228
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST LR++E+GIVDQV+LT N DG KF K+R+R+ ++PQIGDKFASRHGQKG
Sbjct: 930 TQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKVRMRTTKVPQIGDKFASRHGQKG 989
Query: 67 T 67
T
Sbjct: 990 T 990
>gi|357216645|gb|AET71056.1| RNA polymerase II second largest subunit, partial [Trametes
cubensis]
Length = 617
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST L+++E+GI+DQV++T N +G KF KIRVRS RIPQIGDKFASRHGQKG
Sbjct: 520 TRTHTKRDVSTPLKSTESGIIDQVLITTNSEGQKFVKIRVRSTRIPQIGDKFASRHGQKG 579
Query: 67 T 67
T
Sbjct: 580 T 580
>gi|354544175|emb|CCE40898.1| hypothetical protein CPAR2_109360 [Candida parapsilosis]
Length = 1228
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST LR++E+GIVDQV+LT N DG KF K+R+R+ ++PQIGDKFASRHGQKG
Sbjct: 930 TQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKVRMRTTKVPQIGDKFASRHGQKG 989
Query: 67 T 67
T
Sbjct: 990 T 990
>gi|223590257|sp|A5DHT2.3|RPB2_PICGU RecName: Full=DNA-directed RNA polymerase II subunit RPB2;
Short=RNA polymerase II subunit 2; Short=RNA polymerase
II subunit B2
Length = 1236
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST LR++E+GIVDQV+LT N DG KF K+R+R+ ++PQIGDKFASRHGQKG
Sbjct: 938 TQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKVRMRTTKVPQIGDKFASRHGQKG 997
Query: 67 T 67
T
Sbjct: 998 T 998
>gi|396941873|gb|AFN89654.1| RNA polymerase II, partial [Candida multigemmis]
Length = 779
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST LR++E+GIVDQV+LT N DG KF K+R+R+ ++PQIGDKFASRHGQKG
Sbjct: 625 TQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKVRMRTTKVPQIGDKFASRHGQKG 684
Query: 67 T 67
T
Sbjct: 685 T 685
>gi|94410924|gb|ABF18581.1| RNA polymerase II second largest subunit, partial [Porotheleum
fimbriatum]
Length = 689
Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 40/61 (65%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ ++RD ST L+++E GIVDQV++T N +G KF K+RVRS+R+PQIGDKFASRHGQKG
Sbjct: 519 TRTHTRRDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSIRVPQIGDKFASRHGQKG 578
Query: 67 T 67
T
Sbjct: 579 T 579
>gi|323449816|gb|EGB05701.1| hypothetical protein AURANDRAFT_38329 [Aureococcus anophagefferens]
Length = 1233
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/57 (71%), Positives = 49/57 (85%)
Query: 11 SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
SKRD ST +R +E+G+VDQVML+ N DG KF K+R R++RIPQIGDKFASRHGQKGT
Sbjct: 946 SKRDSSTTMRPNESGLVDQVMLSTNQDGMKFTKVRTRTIRIPQIGDKFASRHGQKGT 1002
>gi|312204340|gb|ADQ47487.1| RNA polymerase II second largest subunit [Odontotrema cassiopes]
Length = 297
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E+GIVD+V+LT N +G KF K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 137 TKLHTKRDASTPLRSTESGIVDKVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKG 196
Query: 67 T 67
T
Sbjct: 197 T 197
>gi|312204302|gb|ADQ47468.1| RNA polymerase II second largest subunit [Bryodiscus arctoalpinus]
Length = 718
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E+GIVD+V+LT N +G KF K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 557 TKLHTKRDASTPLRSTESGIVDKVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKG 616
Query: 67 T 67
T
Sbjct: 617 T 617
>gi|83415497|gb|ABC17956.1| RNA polymerase II second largest subunit, partial [Rozella
allomycis]
Length = 697
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T ++RD ST L+++E GI+DQVM++ N DGY+F KIRV SVR+PQ+GDKFASRHGQKG
Sbjct: 496 TSTHTRRDASTPLKSNEHGIIDQVMISTNADGYRFVKIRVSSVRVPQMGDKFASRHGQKG 555
Query: 67 T 67
T
Sbjct: 556 T 556
>gi|396941889|gb|AFN89662.1| RNA polymerase II, partial [Scheffersomyces spartinae]
Length = 758
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST LR++E+GIVDQV+LT N DG KF K+R+R+ ++PQIGDKFASRHGQKG
Sbjct: 604 TQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKVRMRTTKVPQIGDKFASRHGQKG 663
Query: 67 T 67
T
Sbjct: 664 T 664
>gi|396941871|gb|AFN89653.1| RNA polymerase II, partial [Spathaspora passalidarum]
Length = 779
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST LR++E+GIVDQV+LT N DG KF K+R+R+ ++PQIGDKFASRHGQKG
Sbjct: 625 TQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKVRMRTTKVPQIGDKFASRHGQKG 684
Query: 67 T 67
T
Sbjct: 685 T 685
>gi|46277296|gb|AAS86838.1| DNA-dependent RNA polymerase II [Iodophanus hyperboreus]
Length = 552
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/61 (70%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK SKRD ST LR++E+GIVDQVM+T N +G KF K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 391 TKFHSKRDVSTPLRSTESGIVDQVMVTTNQEGLKFVKVRMRTTKIPQIGDKFASRHGQKG 450
Query: 67 T 67
T
Sbjct: 451 T 451
>gi|343482722|gb|AEM45106.1| RNA polymerase II second largest subunit [Archaeorhizomyces sp.
FG15P2b]
Length = 736
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST +R++E+GI+DQVM+T N +G KF K+R+RS RIPQIGDKFASRHGQKG
Sbjct: 534 TKFHTKRDVSTPMRSTESGIIDQVMVTTNQEGLKFVKVRMRSTRIPQIGDKFASRHGQKG 593
Query: 67 T 67
T
Sbjct: 594 T 594
>gi|219564031|gb|ACL28199.1| RNA polymerase II second largest subunit, partial [Bryoscyphus
dicrani]
Length = 263
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E GIVDQV++T N +G +F K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 140 TKAHTKRDASTPLRSTENGIVDQVLITTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKG 199
Query: 67 T 67
T
Sbjct: 200 T 200
>gi|45120574|gb|AAO64669.2| RNA polymerase II subunit RPB2, partial [Phlebia radiata]
Length = 674
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST L+++E+GI+DQV++T N +G KF KIRVRS RIPQIGDKFASRHGQKG
Sbjct: 516 TRSHTKRDVSTPLKSTESGIIDQVLITTNQEGQKFVKIRVRSTRIPQIGDKFASRHGQKG 575
Query: 67 T 67
T
Sbjct: 576 T 576
>gi|396941805|gb|AFN89620.1| RNA polymerase II, partial [Candida boidinii]
Length = 783
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR +E GIVDQV+LT N +G KF K+R+R+ ++PQIGDKFASRHGQKG
Sbjct: 629 TKYHTKRDASTPLRTTENGIVDQVLLTTNSEGLKFVKVRMRTTKVPQIGDKFASRHGQKG 688
Query: 67 T 67
T
Sbjct: 689 T 689
>gi|169125453|gb|ACA48209.1| RNA polymerase II second largest subunit [Tricharina praecox]
Length = 291
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 53/64 (82%), Gaps = 1/64 (1%)
Query: 5 GTTKRF-SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
G ++F +KRD ST LR++E GIVDQVMLT N DG KF K+R+R+ ++PQIGDKFASRHG
Sbjct: 132 GQRQKFHTKRDVSTPLRSTENGIVDQVMLTTNADGLKFVKVRMRTTKVPQIGDKFASRHG 191
Query: 64 QKGT 67
QKGT
Sbjct: 192 QKGT 195
>gi|123979366|gb|ABM81508.1| RNA polymerase II second largest subunit [Pyxine sorediata]
Length = 704
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 53/61 (86%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E+G+VDQV+LT+N +G +F K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 537 TKLHNKRDASTPLRSTESGLVDQVLLTVNSEGLRFVKVRMRTTKIPQIGDKFASRHGQKG 596
Query: 67 T 67
T
Sbjct: 597 T 597
>gi|120561277|gb|ABM27023.1| RNA polymerase II second largest subunit, partial [Neocallimastix
frontalis]
Length = 915
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST LR++ETGIVD+V++T N DG +F K+RVRS RIPQ+GDKFASRHGQKG
Sbjct: 714 TEHHTKRDASTPLRSTETGIVDRVLVTNNQDGMRFVKVRVRSTRIPQMGDKFASRHGQKG 773
Query: 67 T 67
T
Sbjct: 774 T 774
>gi|109289335|gb|ABG29161.1| RNA polymerase II largest subunit, partial [Asterotremella
humicola]
Length = 706
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/57 (70%), Positives = 49/57 (85%)
Query: 11 SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
+KRD ST ++++E G+VDQVM+T N DG KF KIR+RS R+PQIGDKFASRHGQKGT
Sbjct: 535 TKRDVSTPMKSTEQGVVDQVMITTNADGLKFVKIRIRSTRVPQIGDKFASRHGQKGT 591
>gi|312204348|gb|ADQ47491.1| RNA polymerase II second largest subunit [Odontotrema sp. 1
EB-2010]
Length = 289
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E+GIVD+V+LT N +G KF K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 130 TKLHTKRDASTPLRSTESGIVDKVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKG 189
Query: 67 T 67
T
Sbjct: 190 T 190
>gi|119644183|gb|ABL85611.1| RNA polymerase II second largest subunit [Phaeophyscia orbicularis]
Length = 718
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E+G+VDQV+LT N +G +F K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 544 TKLHTKRDASTPLRSTESGLVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKG 603
Query: 67 T 67
T
Sbjct: 604 T 604
>gi|55583690|gb|AAV53364.1| RNA polymerase II second largest subunit [Grifola sordulenta]
Length = 712
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST L+++E GI+DQV++T N +G KF KIRVRS RIPQIGDKFASRHGQKG
Sbjct: 531 TRTHTKRDVSTPLKSTEQGIIDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKG 590
Query: 67 T 67
T
Sbjct: 591 T 591
>gi|395334467|gb|EJF66843.1| DNA-dependent RNA polymerase II second largest subunit [Dichomitus
squalens LYAD-421 SS1]
Length = 1222
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/61 (70%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST L+++E GIVDQV++T N +G KF KIRVRS RIPQIGDKFASRHGQKG
Sbjct: 926 TRTHTKRDVSTPLKSTEQGIVDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKG 985
Query: 67 T 67
T
Sbjct: 986 T 986
>gi|55583686|gb|AAV53362.1| RNA polymerase II second largest subunit [Fomitopsis pinicola]
Length = 704
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ ++RD ST L+++E+GI+DQV++T N +G KF KIRVRS RIPQIGDKFASRHGQKG
Sbjct: 508 TRNHTRRDVSTPLKSTESGIIDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKG 567
Query: 67 T 67
T
Sbjct: 568 T 568
>gi|110704328|gb|ABG88064.1| RNA polymerase II second largest subunit [Microbotryum violaceum]
Length = 699
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/60 (71%), Positives = 50/60 (83%)
Query: 8 KRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
K +KRD ST L+++E GIVDQV++T N DG KF KIRVRS RIP+IGDKFASRHGQKGT
Sbjct: 525 KNHTKRDVSTPLKSTENGIVDQVLVTTNQDGLKFVKIRVRSTRIPEIGDKFASRHGQKGT 584
>gi|52699878|gb|AAU87000.1| DNA-dependent RNA polymerase II second largest subunit
[Sphaerophorus globosus]
Length = 735
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK+ +KRD ST LR++E GIVDQV+L+ N DG +F K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 561 TKQHTKRDTSTPLRSTENGIVDQVLLSTNSDGLRFVKVRMRTTKIPQIGDKFASRHGQKG 620
Query: 67 T 67
T
Sbjct: 621 T 621
>gi|82706475|gb|ABB89615.1| RNA polymerase II second largest subunit, partial [Scutellinia
scutellata]
Length = 538
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/60 (70%), Positives = 50/60 (83%)
Query: 8 KRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
K +KRD ST LR++E GIVDQVMLT N DG KF K+R+R+ ++PQIGDKFASRHGQKGT
Sbjct: 452 KCHTKRDVSTPLRSTENGIVDQVMLTTNADGLKFVKVRMRTTKVPQIGDKFASRHGQKGT 511
>gi|93278297|gb|ABF06604.1| RNA polymerase II second largest subunit, partial [Conocybe apala]
Length = 629
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 53/61 (86%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ ++RD ST L+++E+GIVDQV++T N +G+KF K+RVRS RIPQIGDKFASRHGQKG
Sbjct: 523 TRTHTRRDVSTPLKSTESGIVDQVLITTNSEGHKFVKVRVRSTRIPQIGDKFASRHGQKG 582
Query: 67 T 67
T
Sbjct: 583 T 583
>gi|448120161|ref|XP_004203908.1| Piso0_000931 [Millerozyma farinosa CBS 7064]
gi|359384776|emb|CCE78311.1| Piso0_000931 [Millerozyma farinosa CBS 7064]
Length = 1233
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST LR++E+GIVDQV+LT N DG KF K+R+R+ ++PQIGDKFASRHGQKG
Sbjct: 935 TQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKVRMRTTKVPQIGDKFASRHGQKG 994
Query: 67 T 67
T
Sbjct: 995 T 995
>gi|357216639|gb|AET71053.1| RNA polymerase II second largest subunit, partial [Trametes
pavonia]
Length = 609
Score = 89.7 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 41/61 (67%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST L+++E+GI+DQV++T N +G KF KIRVRS IPQIGDKFASRHGQKG
Sbjct: 520 TRTHTKRDVSTPLKSTESGIIDQVLITTNAEGQKFVKIRVRSTXIPQIGDKFASRHGQKG 579
Query: 67 T 67
T
Sbjct: 580 T 580
>gi|67942336|gb|AAY83368.1| DNA-dependent RNA polymerase II [Plectania nannfeldtii]
Length = 541
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/60 (70%), Positives = 50/60 (83%)
Query: 8 KRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
K +KRD ST LR++E GIVDQVMLT N +G KF K+R+R+ +IPQIGDKFASRHGQKGT
Sbjct: 395 KYHTKRDVSTPLRSTENGIVDQVMLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKGT 454
>gi|50303683|ref|XP_451784.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49640916|emb|CAH02177.1| KLLA0B05577p [Kluyveromyces lactis]
Length = 1221
Score = 89.7 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 41/57 (71%), Positives = 49/57 (85%)
Query: 11 SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
SKRD ST LR++E GIVDQV++T N +G KF K+RVR+ +IPQIGDKFASRHGQKGT
Sbjct: 930 SKRDASTPLRSTENGIVDQVLITTNQEGLKFVKVRVRTTKIPQIGDKFASRHGQKGT 986
>gi|344304446|gb|EGW34678.1| DNA-dependent RNA polymerase II [Spathaspora passalidarum NRRL
Y-27907]
Length = 1238
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST LR++E+GIVDQV+LT N DG KF K+R+R+ ++PQIGDKFASRHGQKG
Sbjct: 940 TQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKVRMRTTKVPQIGDKFASRHGQKG 999
Query: 67 T 67
T
Sbjct: 1000 T 1000
>gi|52699874|gb|AAU86998.1| DNA-dependent RNA polymerase II second largest subunit [Seynesia
erumpens]
Length = 673
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK KRD ST LR++E+GI+DQV++T N DG +F K+RVR+ +IPQIGDKFASRHGQKG
Sbjct: 513 TKVHVKRDASTPLRSTESGIIDQVVVTTNADGLRFVKVRVRTTKIPQIGDKFASRHGQKG 572
Query: 67 T 67
T
Sbjct: 573 T 573
>gi|406857838|gb|AFS64664.1| RNA polymerase II second largest subunit, partial [Glaucotrema
glaucophaeum]
Length = 305
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E GIVD+V+LT N DG KF K+R+R+ ++PQIGDKFASRHGQKG
Sbjct: 144 TKTHTKRDASTPLRSTENGIVDKVLLTTNSDGLKFVKVRMRTTKVPQIGDKFASRHGQKG 203
Query: 67 T 67
T
Sbjct: 204 T 204
>gi|113957204|gb|ABI49108.1| RNA polymerase II second largest subunit [Anaptychia palmatula]
Length = 707
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E+G+VDQV+LT N +G +F K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 544 TKLHTKRDASTPLRSTESGLVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKG 603
Query: 67 T 67
T
Sbjct: 604 T 604
>gi|55140711|gb|AAQ01544.3| RNA polymerase II second largest subunit [Phaeomarasmius proximans]
Length = 687
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ ++RD ST L+++E+GIVDQV+LT N +G KF K+RVRS RIPQIGDKFASRHGQKG
Sbjct: 519 TRTHTRRDVSTPLKSTESGIVDQVLLTTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKG 578
Query: 67 T 67
T
Sbjct: 579 T 579
>gi|4867864|emb|CAB43075.1| RNA polymerase II [Mitrasacme pilosa]
Length = 242
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 49/61 (80%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
R++ RD ST LR+SE G VD V+LT N DG +F K+RVRSVRIPQIGDKF+SRHGQKG
Sbjct: 13 ASRYTXRDHSTSLRHSENGXVDXVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKG 72
Query: 67 T 67
T
Sbjct: 73 T 73
>gi|344234576|gb|EGV66444.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Candida tenuis ATCC 10573]
Length = 1233
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST LR++E+GIVDQV+LT N DG KF K+R+R+ ++PQIGDKFASRHGQKG
Sbjct: 935 TQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKVRMRTTKVPQIGDKFASRHGQKG 994
Query: 67 T 67
T
Sbjct: 995 T 995
>gi|123979420|gb|ABM81535.1| RNA polymerase II second largest subunit [Dirinaria applanata]
Length = 705
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 53/61 (86%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E+G+VDQV+LT+N +G +F K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 538 TKLHNKRDASTPLRSTESGLVDQVLLTVNSEGLRFVKVRMRTTKIPQIGDKFASRHGQKG 597
Query: 67 T 67
T
Sbjct: 598 T 598
>gi|67942342|gb|AAY83371.1| DNA-dependent RNA polymerase II [Urnula craterium]
Length = 545
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/60 (70%), Positives = 50/60 (83%)
Query: 8 KRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
K +KRD ST LR++E GIVDQVMLT N +G KF K+R+R+ +IPQIGDKFASRHGQKGT
Sbjct: 395 KYHTKRDVSTPLRSTENGIVDQVMLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKGT 454
>gi|67942340|gb|AAY83370.1| DNA-dependent RNA polymerase II [Galiella rufa]
Length = 531
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/60 (70%), Positives = 50/60 (83%)
Query: 8 KRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
K +KRD ST LR++E GIVDQVMLT N +G KF K+R+R+ +IPQIGDKFASRHGQKGT
Sbjct: 377 KYHTKRDVSTPLRSTENGIVDQVMLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKGT 436
>gi|67942338|gb|AAY83369.1| DNA-dependent RNA polymerase II [Donadinia sp. mh669]
Length = 561
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/60 (70%), Positives = 50/60 (83%)
Query: 8 KRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
K +KRD ST LR++E GIVDQVMLT N +G KF K+R+R+ +IPQIGDKFASRHGQKGT
Sbjct: 401 KYHTKRDVSTPLRSTENGIVDQVMLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKGT 460
>gi|396941943|gb|AFN89688.1| RNA polymerase II, partial [Komagataella pastoris]
Length = 771
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E GIVDQV+LT N +G KF K+R+R+ ++PQIGDKFASRHGQKG
Sbjct: 617 TKYHTKRDASTPLRSTENGIVDQVLLTTNQEGLKFVKVRMRTTKVPQIGDKFASRHGQKG 676
Query: 67 T 67
T
Sbjct: 677 T 677
>gi|300394758|gb|ADK11917.1| DNA-directed RNA polymerase II subunit two, partial [Serpula
similis]
Length = 512
Score = 89.7 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 41/61 (67%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ ++RD ST L+++E GIVDQV++T N +G KF K+RVRS RIPQIGDKFASRHGQKG
Sbjct: 381 TRTHTRRDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKG 440
Query: 67 T 67
T
Sbjct: 441 T 441
>gi|67942356|gb|AAY83378.1| DNA-dependent RNA polymerase II [Strobiloscypha keliae]
Length = 571
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/60 (70%), Positives = 50/60 (83%)
Query: 8 KRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
K +KRD ST LR++E GIVDQVMLT N +G KF K+R+R+ +IPQIGDKFASRHGQKGT
Sbjct: 413 KYHTKRDVSTPLRSTENGIVDQVMLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKGT 472
>gi|99866478|gb|ABF67584.1| RNA polymerase II second largest subunit, partial [Auricularia
auricula-judae]
Length = 690
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ KRD ST L+++E GIVDQV++T N DG KF KIR+RS R+PQIGDKFASRHGQKG
Sbjct: 520 TRTHQKRDVSTPLKSTENGIVDQVLITTNQDGQKFVKIRIRSTRVPQIGDKFASRHGQKG 579
Query: 67 T 67
T
Sbjct: 580 T 580
>gi|145307925|gb|ABP57266.1| RNA polymerase II second largest subunit, partial [Entomophthora
muscae]
Length = 243
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/57 (71%), Positives = 51/57 (89%)
Query: 11 SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
+KRD ST L+++ETGIVD+VMLT+N +G +F K+RVRS R+PQIGDKFASRHGQKGT
Sbjct: 147 TKRDVSTPLKSTETGIVDRVMLTINQEGMRFAKVRVRSTRVPQIGDKFASRHGQKGT 203
>gi|119710056|gb|ABL96276.1| RNA polymerase II second largest subunit [Sphaerophorus fragilis]
Length = 315
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK+ +KRD ST LR++E GIVDQV+L+ N DG +F K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 157 TKQHTKRDTSTPLRSTENGIVDQVLLSTNSDGLRFVKVRMRTTKIPQIGDKFASRHGQKG 216
Query: 67 T 67
T
Sbjct: 217 T 217
>gi|52699884|gb|AAU87003.1| DNA-dependent RNA polymerase II second largest subunit
[Stereocaulon paschale]
Length = 717
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK KRD ST LR++E GIVDQV+L+ N DG +F K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 541 TKLHVKRDASTPLRSTENGIVDQVLLSTNADGLRFAKVRMRTTKIPQIGDKFASRHGQKG 600
Query: 67 T 67
T
Sbjct: 601 T 601
>gi|302698289|ref|XP_003038823.1| DNA-dependent RNA polymerase II second largest subunit
[Schizophyllum commune H4-8]
gi|300112520|gb|EFJ03921.1| DNA-dependent RNA polymerase II second largest subunit
[Schizophyllum commune H4-8]
Length = 1204
Score = 89.7 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 41/61 (67%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK ++RD ST L+++E+GI+DQV+LT N DG K ++RVRS RIPQIGDKFASRHGQKG
Sbjct: 908 TKNHTRRDVSTPLKSTESGIIDQVLLTTNEDGKKLIRVRVRSTRIPQIGDKFASRHGQKG 967
Query: 67 T 67
T
Sbjct: 968 T 968
>gi|219564007|gb|ACL28187.1| RNA polymerase II second largest subunit, partial [Absconditella
sphagnorum]
Length = 285
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E GIVD+V+LT N +G KF K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 138 TKLHTKRDASTPLRSTENGIVDKVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKG 197
Query: 67 T 67
T
Sbjct: 198 T 198
>gi|58618681|gb|AAW80835.1| RNA polymerase II second largest subunit [Cotylidia sp. MB5]
Length = 892
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ ++RD ST L+++E GIVDQV++T N DG KF K+RVRS RIPQIGDKFASRHGQKG
Sbjct: 698 TRTHTRRDVSTPLKSTENGIVDQVLITTNSDGQKFVKVRVRSTRIPQIGDKFASRHGQKG 757
Query: 67 T 67
T
Sbjct: 758 T 758
>gi|241948201|ref|XP_002416823.1| DNA-dependent RNA polymerase II component, putative [Candida
dubliniensis CD36]
gi|223640161|emb|CAX44408.1| DNA-dependent RNA polymerase II component, putative [Candida
dubliniensis CD36]
Length = 1234
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST LR++E+GIVDQV+LT N DG KF K+R+R+ ++PQIGDKFASRHGQKG
Sbjct: 936 TQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKVRMRTTKVPQIGDKFASRHGQKG 995
Query: 67 T 67
T
Sbjct: 996 T 996
>gi|169844839|ref|XP_001829140.1| DNA-dependent RNA polymerase II second largest subunit [Coprinopsis
cinerea okayama7#130]
gi|116509880|gb|EAU92775.1| DNA-dependent RNA polymerase II second largest subunit [Coprinopsis
cinerea okayama7#130]
Length = 1222
Score = 89.7 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 41/61 (67%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ ++RD ST L+++E GIVDQV++T N +G KF K+RVRS RIPQIGDKFASRHGQKG
Sbjct: 926 TRTHTRRDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKG 985
Query: 67 T 67
T
Sbjct: 986 T 986
>gi|408691393|gb|AFU82036.1| RNA polymerase II, partial [Morchella diminutiva]
Length = 243
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/60 (70%), Positives = 50/60 (83%)
Query: 8 KRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
K +KRD ST LR++E GIVDQVMLT N +G KF K+R+R+ +IPQIGDKFASRHGQKGT
Sbjct: 135 KYHTKRDVSTPLRSTENGIVDQVMLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKGT 194
>gi|45545347|gb|AAS67521.1| DNA-dependent RNA polymerase II second largest subunit, partial
[Sphaerophorus globosus]
Length = 903
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK+ +KRD ST LR++E GIVDQV+L+ N DG +F K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 735 TKQHTKRDTSTPLRSTENGIVDQVLLSTNSDGLRFVKVRMRTTKIPQIGDKFASRHGQKG 794
Query: 67 T 67
T
Sbjct: 795 T 795
>gi|52699818|gb|AAU86971.1| DNA-dependent RNA polymerase II second largest subunit [Gyalecta
ulmi]
Length = 711
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR +E+GIVD+V+LT N +G KF K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 535 TKLHTKRDASTPLRTTESGIVDRVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKG 594
Query: 67 T 67
T
Sbjct: 595 T 595
>gi|6606093|gb|AAF19059.1|AF107787_1 DNA-dependent RNA polymerase II RPB140 [Candida albicans]
Length = 1210
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST LR++E+GIVDQV+LT N DG KF K+R+R+ ++PQIGDKFASRHGQKG
Sbjct: 936 TQYHTKRDASTPLRSTESGIVDQVLLTTNGDGSKFVKVRMRTTKVPQIGDKFASRHGQKG 995
Query: 67 T 67
T
Sbjct: 996 T 996
>gi|258562140|gb|ACV81792.1| RNA polymerase II second largest subunit [Ramaria stricta]
Length = 679
Score = 89.7 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 40/61 (65%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T ++RD ST L+++E+GIVDQV++T N DG++F K+RVRS RIPQ GDKFASRHGQKG
Sbjct: 496 TSNHTRRDVSTPLKSTESGIVDQVLITTNSDGHRFVKVRVRSTRIPQTGDKFASRHGQKG 555
Query: 67 T 67
T
Sbjct: 556 T 556
>gi|312204298|gb|ADQ47466.1| RNA polymerase II second largest subunit [Belonia herculana]
Length = 289
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E+GIVD+VM+T N +G KF K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 134 TKFHTKRDASTPLRSTESGIVDKVMVTTNAEGLKFAKVRMRTTKIPQIGDKFASRHGQKG 193
Query: 67 T 67
T
Sbjct: 194 T 194
>gi|294886743|ref|XP_002771831.1| DNA-directed RNA polymerase II subunit, putative [Perkinsus marinus
ATCC 50983]
gi|239875631|gb|EER03647.1| DNA-directed RNA polymerase II subunit, putative [Perkinsus marinus
ATCC 50983]
Length = 993
Score = 89.7 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 38/64 (59%), Positives = 53/64 (82%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
EG +++++RD S L+ ++ G+VDQVML++N G+KF KIRVR++R+P IGDKFASRHG
Sbjct: 916 EGRIQKYTERDCSVALKGADNGVVDQVMLSVNARGHKFTKIRVRTLRVPTIGDKFASRHG 975
Query: 64 QKGT 67
QKGT
Sbjct: 976 QKGT 979
>gi|312204364|gb|ADQ47499.1| RNA polymerase II second largest subunit [Sagiolechia protuberans]
Length = 292
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E GIVD+V+LT N +G KF K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 137 TKLHTKRDASTPLRSTENGIVDKVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKG 196
Query: 67 T 67
T
Sbjct: 197 T 197
>gi|312204294|gb|ADQ47464.1| RNA polymerase II second largest subunit [Absconditella sphagnorum]
Length = 712
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E GIVD+V+LT N +G KF K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 554 TKLHTKRDASTPLRSTENGIVDKVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKG 613
Query: 67 T 67
T
Sbjct: 614 T 614
>gi|6606133|gb|AAF19079.1|AF107807_1 DNA-dependent RNA polymerase II RPB140, partial [Leotia viscosa]
Length = 938
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK SKRD ST LR++E GIVDQV++T N +G +F K+R+R+ ++PQIGDKFASRHGQKG
Sbjct: 737 TKAHSKRDASTPLRSTENGIVDQVLITTNAEGLRFVKVRMRTTKVPQIGDKFASRHGQKG 796
Query: 67 T 67
T
Sbjct: 797 T 797
>gi|254567802|ref|XP_002491011.1| RNA polymerase II second largest subunit B150, part of central core
[Komagataella pastoris GS115]
gi|238030808|emb|CAY68731.1| RNA polymerase II second largest subunit B150, part of central core
[Komagataella pastoris GS115]
gi|328352458|emb|CCA38857.1| DNA-directed RNA polymerase III subunit C2 [Komagataella pastoris
CBS 7435]
Length = 1227
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E GIVDQV+LT N +G KF K+R+R+ ++PQIGDKFASRHGQKG
Sbjct: 929 TKYHTKRDASTPLRSTENGIVDQVLLTTNQEGLKFVKVRMRTTKVPQIGDKFASRHGQKG 988
Query: 67 T 67
T
Sbjct: 989 T 989
>gi|55831371|gb|AAV66544.1| RNA polymerase II second largest subunit [Hygrocybe aff. conica PBM
918]
Length = 686
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ ++RD ST L+++E GIVDQV++T N +G+KF KIRVR+ R+PQIGDKFASRHGQKG
Sbjct: 533 TRSHTRRDVSTPLKSTENGIVDQVLITTNAEGHKFVKIRVRATRVPQIGDKFASRHGQKG 592
Query: 67 T 67
T
Sbjct: 593 T 593
>gi|2736123|gb|AAB94062.1| RPB140 [Aristolochia gigantea]
Length = 555
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/65 (66%), Positives = 52/65 (80%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
L G +F+KRD S LR+SE+G+VDQV+ T N +G +F KIRVRSVRI QIGDKF+SRH
Sbjct: 376 LPGQLSKFTKRDHSISLRHSESGVVDQVLYTTNAEGLRFTKIRVRSVRILQIGDKFSSRH 435
Query: 63 GQKGT 67
GQKGT
Sbjct: 436 GQKGT 440
>gi|89274894|gb|ABD65888.1| RNA polymerase II second largest subunit, partial [Laetiporus
sulphureus]
Length = 897
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ ++RD ST L+++E+GI+DQV++T N +G KF KIRVRS RIPQIGDKFASRHGQKG
Sbjct: 700 TRAHTRRDVSTPLKSTESGIIDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKG 759
Query: 67 T 67
T
Sbjct: 760 T 760
>gi|46277316|gb|AAS86848.1| DNA-dependent RNA polymerase II [Pachyella punctispora]
Length = 555
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E+GIVDQVMLT N +G KF K+R+R+ ++PQIGDKFASRHGQKG
Sbjct: 394 TKFHTKRDVSTPLRSTESGIVDQVMLTTNQEGLKFVKVRMRTTKVPQIGDKFASRHGQKG 453
Query: 67 T 67
T
Sbjct: 454 T 454
>gi|345561256|gb|EGX44352.1| hypothetical protein AOL_s00193g80 [Arthrobotrys oligospora ATCC
24927]
Length = 1258
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E GIVDQVMLT N +G +F K+R+R+ ++PQIGDKFASRHGQKG
Sbjct: 961 TKNHTKRDVSTPLRSTENGIVDQVMLTTNAEGMRFVKVRMRTTKVPQIGDKFASRHGQKG 1020
Query: 67 T 67
T
Sbjct: 1021 T 1021
>gi|194320238|gb|ACF48355.1| DNA-dependent RNA polymerase II second largest subunit [Lepraria
lobificans]
Length = 317
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK KRD ST LR++E GIVDQV+L+ N DG +F K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 150 TKLHVKRDASTPLRSTENGIVDQVLLSTNADGLRFAKVRMRTTKIPQIGDKFASRHGQKG 209
Query: 67 T 67
T
Sbjct: 210 T 210
>gi|45545329|gb|AAS67512.1| DNA-dependent RNA polymerase II second largest subunit, partial
[Diploschistes muscorum]
Length = 901
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK SKRD ST LR++E GIVD+V+LT N +G KF K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 733 TKLHSKRDASTPLRSTENGIVDKVLLTTNQEGLKFVKVRMRTTKIPQIGDKFASRHGQKG 792
Query: 67 T 67
T
Sbjct: 793 T 793
>gi|393218117|gb|EJD03605.1| DNA-dependent RNA polymerase II second largest subunit [Fomitiporia
mediterranea MF3/22]
Length = 1274
Score = 89.4 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 43/61 (70%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST L+++E GIVDQV++T N +G KF KIRVRS RIPQIGDKFASRHGQKG
Sbjct: 978 TRGHTKRDISTPLKSTEQGIVDQVVVTTNAEGTKFVKIRVRSTRIPQIGDKFASRHGQKG 1037
Query: 67 T 67
T
Sbjct: 1038 T 1038
>gi|219564089|gb|ACL28228.1| RNA polymerase II second largest subunit, partial [Neobulgaria
lilacina]
Length = 273
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E GIVDQV++T N +G +F K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 130 TKAHTKRDASTPLRSTENGIVDQVLITTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKG 189
Query: 67 T 67
T
Sbjct: 190 T 190
>gi|68475107|ref|XP_718439.1| hypothetical protein CaO19.10857 [Candida albicans SC5314]
gi|68475648|ref|XP_718172.1| hypothetical protein CaO19.3349 [Candida albicans SC5314]
gi|46439928|gb|EAK99240.1| hypothetical protein CaO19.3349 [Candida albicans SC5314]
gi|46440204|gb|EAK99513.1| hypothetical protein CaO19.10857 [Candida albicans SC5314]
gi|238879352|gb|EEQ42990.1| DNA-directed RNA polymerase II polypeptide 2 [Candida albicans
WO-1]
Length = 1234
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST LR++E+GIVDQV+LT N DG KF K+R+R+ ++PQIGDKFASRHGQKG
Sbjct: 936 TQYHTKRDASTPLRSTESGIVDQVLLTTNGDGSKFVKVRMRTTKVPQIGDKFASRHGQKG 995
Query: 67 T 67
T
Sbjct: 996 T 996
>gi|119644218|gb|ABL85613.1| RNA polymerase II second largest subunit [Rinodina tephraspis]
Length = 718
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E+G+VDQV+LT N +G +F K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 544 TKLHTKRDASTPLRSTESGLVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKG 603
Query: 67 T 67
T
Sbjct: 604 T 604
>gi|406857758|gb|AFS64624.1| RNA polymerase II second largest subunit, partial [Glaucotrema
glaucophaeum]
Length = 265
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E GIVD+V+LT N DG KF K+R+R+ ++PQIGDKFASRHGQKG
Sbjct: 119 TKTHTKRDASTPLRSTENGIVDKVLLTTNSDGLKFVKVRMRTTKVPQIGDKFASRHGQKG 178
Query: 67 T 67
T
Sbjct: 179 T 179
>gi|393244464|gb|EJD51976.1| DNA-dependent RNA polymerase II second largest subunit [Auricularia
delicata TFB-10046 SS5]
Length = 1217
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ KRD ST L+++E GIVDQV++T N DG KF KIR+RS R+PQIGDKFASRHGQKG
Sbjct: 921 TRTHQKRDVSTPLKSTENGIVDQVLITTNQDGQKFVKIRIRSTRVPQIGDKFASRHGQKG 980
Query: 67 T 67
T
Sbjct: 981 T 981
>gi|55583688|gb|AAV53363.1| RNA polymerase II second largest subunit [Grifola frondosa]
Length = 719
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ ++RD ST L+++E+GI+DQV++T N +G KF KIRVRS RIPQIGDKFASRHGQKG
Sbjct: 525 TRTHTRRDVSTPLKSTESGIIDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKG 584
Query: 67 T 67
T
Sbjct: 585 T 585
>gi|46277320|gb|AAS86850.1| DNA-dependent RNA polymerase II [Pachyella violaceonigra]
Length = 547
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E+GIVDQVMLT N +G KF K+R+R+ ++PQIGDKFASRHGQKG
Sbjct: 391 TKFHTKRDVSTPLRSTESGIVDQVMLTTNQEGLKFVKVRMRTTKVPQIGDKFASRHGQKG 450
Query: 67 T 67
T
Sbjct: 451 T 451
>gi|300394682|gb|ADK11879.1| DNA-directed RNA polymerase II subunit two, partial [Boletus
edulis]
Length = 673
Score = 89.4 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 41/61 (67%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ ++RD ST L+++E GIVDQV++T N +G KF K+RVRS RIPQIGDKFASRHGQKG
Sbjct: 524 TRTHTRRDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKG 583
Query: 67 T 67
T
Sbjct: 584 T 584
>gi|83415465|gb|ABC17940.1| RNA polymerase II second largest subunit, partial [Dimargaris
bacillispora]
Length = 723
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/57 (71%), Positives = 49/57 (85%)
Query: 11 SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
+ +D ST LR++ETGIVDQVMLT N DG KF K+R+RS R+PQ+GDKFASRHGQKGT
Sbjct: 526 ANKDVSTPLRSTETGIVDQVMLTTNQDGLKFVKVRIRSTRVPQMGDKFASRHGQKGT 582
>gi|46277318|gb|AAS86849.1| DNA-dependent RNA polymerase II [Pachyella adnata]
Length = 549
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E+GIVDQVMLT N +G KF K+R+R+ ++PQIGDKFASRHGQKG
Sbjct: 385 TKFHTKRDVSTPLRSTESGIVDQVMLTTNQEGLKFVKVRMRTTKVPQIGDKFASRHGQKG 444
Query: 67 T 67
T
Sbjct: 445 T 445
>gi|406857716|gb|AFS64603.1| RNA polymerase II second largest subunit, partial [Schizotrema aff.
schizolomum Mangold 25o]
Length = 277
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK SKRD ST LR++E GIVD+V+LT N +G KF K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 127 TKLHSKRDASTPLRSTENGIVDKVLLTTNQEGLKFVKVRMRTTKIPQIGDKFASRHGQKG 186
Query: 67 T 67
T
Sbjct: 187 T 187
>gi|406857712|gb|AFS64601.1| RNA polymerase II second largest subunit, partial [Thelotrema
bicinctulum]
Length = 305
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK SKRD ST LR++E GIVD+V+LT N +G KF K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 144 TKLHSKRDASTPLRSTENGIVDKVLLTTNQEGLKFVKVRMRTTKIPQIGDKFASRHGQKG 203
Query: 67 T 67
T
Sbjct: 204 T 204
>gi|396941797|gb|AFN89616.1| RNA polymerase II, partial [Ogataea methanolica]
Length = 784
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR +E+GIVDQV+LT N +G KF K+R+R+ + PQIGDKFASRHGQKG
Sbjct: 630 TKYHTKRDASTPLRTTESGIVDQVLLTTNAEGLKFVKVRMRTTKTPQIGDKFASRHGQKG 689
Query: 67 T 67
T
Sbjct: 690 T 690
>gi|194320284|gb|ACF48382.1| RNA polymerase II second largest subunit [Pycnothelia papillaria]
Length = 693
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK KRD ST LR++E GIVDQV+L+ N DG +F K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 532 TKLHVKRDASTPLRSTENGIVDQVVLSTNADGLRFAKVRMRTTKIPQIGDKFASRHGQKG 591
Query: 67 T 67
T
Sbjct: 592 T 592
>gi|294874302|ref|XP_002766888.1| RNA polymerase beta subunit, putative [Perkinsus marinus ATCC
50983]
gi|239868263|gb|EEQ99605.1| RNA polymerase beta subunit, putative [Perkinsus marinus ATCC
50983]
Length = 1171
Score = 89.4 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 38/64 (59%), Positives = 53/64 (82%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
EG +++++RD S L+ ++ G+VDQVML++N G+KF KIRVR++R+P IGDKFASRHG
Sbjct: 878 EGRIQKYTERDCSVALKGADNGVVDQVMLSVNARGHKFTKIRVRTLRVPTIGDKFASRHG 937
Query: 64 QKGT 67
QKGT
Sbjct: 938 QKGT 941
>gi|113957191|gb|ABI49106.1| RNA polymerase II second largest subunit [Diploschistes
cinereocaesius]
Length = 709
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK SKRD ST LR++E GIVD+V+LT N +G KF K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 535 TKLHSKRDASTPLRSTENGIVDKVLLTTNQEGLKFVKVRMRTTKIPQIGDKFASRHGQKG 594
Query: 67 T 67
T
Sbjct: 595 T 595
>gi|52699837|gb|AAU86980.1| DNA-dependent RNA polymerase II second largest subunit [Morchella
esculenta]
Length = 708
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/60 (70%), Positives = 50/60 (83%)
Query: 8 KRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
K +KRD ST LR++E GIVDQVMLT N +G KF K+R+R+ +IPQIGDKFASRHGQKGT
Sbjct: 533 KYHTKRDVSTPLRSTENGIVDQVMLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKGT 592
>gi|52699808|gb|AAU86966.1| DNA-dependent RNA polymerase II second largest subunit
[Diploschistes scruposus]
Length = 713
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK SKRD ST LR++E GIVD+V+LT N +G KF K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 537 TKLHSKRDASTPLRSTENGIVDKVLLTTNQEGLKFVKVRMRTTKIPQIGDKFASRHGQKG 596
Query: 67 T 67
T
Sbjct: 597 T 597
>gi|402077539|gb|EJT72888.1| hypothetical protein GGTG_09739 [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 1278
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T + KRD ST LR++E+GIVDQV+LT N DG K+ K+RVR+ +IPQIGDKFASRHGQKG
Sbjct: 981 TVQHVKRDASTPLRSTESGIVDQVILTTNQDGLKYVKVRVRTTKIPQIGDKFASRHGQKG 1040
Query: 67 T 67
T
Sbjct: 1041 T 1041
>gi|400364953|gb|AFP85961.1| DNA-directed RNA polymerase II second largest subunit, partial
[Entomophaga destruens]
Length = 245
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST L+++E GIVD+VML++N +G +F K+RVRS R+PQIGDKFASRHGQKG
Sbjct: 138 TQTHTKRDASTPLKSTENGIVDRVMLSVNAEGMRFSKVRVRSTRVPQIGDKFASRHGQKG 197
Query: 67 T 67
T
Sbjct: 198 T 198
>gi|451350749|gb|AGF39129.1| RNA polymerase II second largest subunit, partial [Topeliopsis
decorticans]
Length = 296
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK SKRD ST LR++E GIVD+V+LT N +G KF K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 140 TKLHSKRDASTPLRSTENGIVDRVLLTTNQEGLKFVKVRMRTTKIPQIGDKFASRHGQKG 199
Query: 67 T 67
T
Sbjct: 200 T 200
>gi|384935998|gb|AFI32429.1| RNA polymerase II subunit 2, partial [Morchella sp. Mes-23]
gi|384936028|gb|AFI32444.1| RNA polymerase II subunit 2, partial [Morchella sp. Mes-22]
gi|384936030|gb|AFI32445.1| RNA polymerase II subunit 2, partial [Morchella sp. Mes-22]
gi|384936032|gb|AFI32446.1| RNA polymerase II subunit 2, partial [Morchella sp. Mes-22]
gi|384936042|gb|AFI32451.1| RNA polymerase II subunit 2, partial [Morchella sp. Mes-23]
gi|384936056|gb|AFI32458.1| RNA polymerase II subunit 2, partial [Morchella sp. Mes-10]
Length = 243
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/60 (70%), Positives = 50/60 (83%)
Query: 8 KRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
K +KRD ST LR++E GIVDQVMLT N +G KF K+R+R+ +IPQIGDKFASRHGQKGT
Sbjct: 112 KYHTKRDVSTPLRSTENGIVDQVMLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKGT 171
>gi|300394760|gb|ADK11918.1| DNA-directed RNA polymerase II subunit two, partial [Tapinella
atrotomentosa]
Length = 653
Score = 89.4 bits (220), Expect = 3e-16, Method: Composition-based stats.
Identities = 41/61 (67%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ ++RD ST L+++E GIVDQV+++ N +G KF KIRVRS RIPQIGDKFASRHGQKG
Sbjct: 523 TRTHTRRDVSTPLKSTENGIVDQVLISTNFEGQKFVKIRVRSTRIPQIGDKFASRHGQKG 582
Query: 67 T 67
T
Sbjct: 583 T 583
>gi|88601062|gb|ABD46527.1| RNA polymerase II second largest subunit, partial [Tulasnella
pruinosa]
Length = 656
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ SKRD ST L+++E GI+DQV++T N +G KF KIRVRS RIPQ+GDKFASRHGQKG
Sbjct: 500 TQTHSKRDVSTPLKSTENGIIDQVLITTNGEGLKFVKIRVRSTRIPQVGDKFASRHGQKG 559
Query: 67 T 67
T
Sbjct: 560 T 560
>gi|400364951|gb|AFP85960.1| DNA-directed RNA polymerase II second largest subunit, partial
[Conidiobolus thromboides]
Length = 246
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST L+++E GIVD+VML++N +G +F K+RVRS R+PQIGDKFASRHGQKG
Sbjct: 138 TQTHTKRDASTPLKSTENGIVDRVMLSVNAEGMRFSKVRVRSTRVPQIGDKFASRHGQKG 197
Query: 67 T 67
T
Sbjct: 198 T 198
>gi|194320248|gb|ACF48361.1| DNA-dependent RNA polymerase II second largest subunit [Phlyctis
argena]
Length = 317
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E GIVD+V+LT N +G KF K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 150 TKLHTKRDASTPLRSTENGIVDKVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKG 209
Query: 67 T 67
T
Sbjct: 210 T 210
>gi|440639504|gb|ELR09423.1| DNA-directed RNA polymerase II subunit B [Geomyces destructans
20631-21]
Length = 1272
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E GIVDQV++T N +G +F K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 975 TKSHTKRDASTPLRSTENGIVDQVLITTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKG 1034
Query: 67 T 67
T
Sbjct: 1035 T 1035
>gi|396941905|gb|AFN89670.1| RNA polymerase II, partial [Babjeviella inositovora]
Length = 758
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E+GIVDQV+LT N DG KF K+R+R+ + PQIGDKFASRHGQKG
Sbjct: 621 TKYHTKRDASTPLRSTESGIVDQVVLTTNGDGAKFVKVRMRTTKTPQIGDKFASRHGQKG 680
Query: 67 T 67
T
Sbjct: 681 T 681
>gi|219563993|gb|ACL28180.1| RNA polymerase II second largest subunit, partial [Cyathicula
microspora]
Length = 302
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E GIVDQV++T N +G +F K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 145 TKAHTKRDASTPLRSTENGIVDQVLITTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKG 204
Query: 67 T 67
T
Sbjct: 205 T 205
>gi|55273993|gb|AAV48867.1| RNA polymerase II second largest subunit [Armillaria mellea]
Length = 884
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ ++RD ST L+N+E GIVDQV++T N +G KF K+RVRS RIPQIGDKFASRHGQKG
Sbjct: 709 TRMHTRRDVSTPLKNTERGIVDQVLVTTNYEGQKFVKVRVRSTRIPQIGDKFASRHGQKG 768
Query: 67 T 67
T
Sbjct: 769 T 769
>gi|300394698|gb|ADK11887.1| DNA-directed RNA polymerase II subunit two, partial [Ceraceomyces
borealis]
Length = 693
Score = 89.4 bits (220), Expect = 3e-16, Method: Composition-based stats.
Identities = 41/61 (67%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ ++RD ST L+++E GIVDQV++T N +G KF K+RVRS RIPQIGDKFASRHGQKG
Sbjct: 524 TRTHTRRDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKG 583
Query: 67 T 67
T
Sbjct: 584 T 584
>gi|83415471|gb|ABC17943.1| RNA polymerase II second largest subunit, partial [Entomophthora
muscae]
Length = 726
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/57 (71%), Positives = 51/57 (89%)
Query: 11 SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
+KRD ST L+++ETGIVD+VMLT+N +G +F K+RVRS R+PQIGDKFASRHGQKGT
Sbjct: 529 TKRDVSTPLKSTETGIVDRVMLTINQEGMRFAKVRVRSTRVPQIGDKFASRHGQKGT 585
>gi|357216655|gb|AET71061.1| RNA polymerase II second largest subunit, partial [Coriolopsis cf.
caperata CR22]
Length = 605
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/61 (70%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST L+++E GIVDQV++T N +G KF KIRVRS RIPQIGDKFASRHGQKG
Sbjct: 520 TRTHTKRDVSTPLKSTEQGIVDQVLITTNQEGQKFVKIRVRSTRIPQIGDKFASRHGQKG 579
Query: 67 T 67
T
Sbjct: 580 T 580
>gi|300394714|gb|ADK11895.1| DNA-directed RNA polymerase II subunit two, partial [Leucogyrophana
olivascens]
Length = 677
Score = 89.4 bits (220), Expect = 3e-16, Method: Composition-based stats.
Identities = 41/61 (67%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ ++RD ST L+++E GIVDQV++T N +G KF K+RVRS RIPQIGDKFASRHGQKG
Sbjct: 521 TRTHTRRDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKG 580
Query: 67 T 67
T
Sbjct: 581 T 581
>gi|357216619|gb|AET71043.1| RNA polymerase II second largest subunit, partial [Trametes
ochracea]
Length = 631
Score = 89.4 bits (220), Expect = 3e-16, Method: Composition-based stats.
Identities = 41/61 (67%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST L+++E GI+DQV++T N +G KF KIRVRS RIPQ GDKFASRHGQKG
Sbjct: 494 TRTHTKRDVSTPLKSTEQGIIDQVLITTNAEGQKFVKIRVRSTRIPQTGDKFASRHGQKG 553
Query: 67 T 67
T
Sbjct: 554 T 554
>gi|120561261|gb|ABM27015.1| RNA polymerase II second largest subunit, partial [Allomyces
macrogynus]
Length = 896
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/57 (71%), Positives = 49/57 (85%)
Query: 11 SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
+K+D ST L+++E GIVD VMLT N DGYKF K+RVRS R+PQ+GDKFASRHGQKGT
Sbjct: 706 TKKDVSTSLKSTEQGIVDHVMLTTNNDGYKFVKVRVRSTRVPQMGDKFASRHGQKGT 762
>gi|403417741|emb|CCM04441.1| predicted protein [Fibroporia radiculosa]
Length = 1226
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ ++RD ST L+++E+GI+DQV++T N +G KF KIRVRS RIPQIGDKFASRHGQKG
Sbjct: 930 TRAHTRRDVSTPLKSTESGIIDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKG 989
Query: 67 T 67
T
Sbjct: 990 T 990
>gi|396941931|gb|AFN89682.1| RNA polymerase II, partial [Sugiyamaella smithiae]
Length = 771
Score = 89.4 bits (220), Expect = 3e-16, Method: Composition-based stats.
Identities = 40/61 (65%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E GIVDQV+LT N +G +F K+R+R+ ++PQIGDKFASRHGQKG
Sbjct: 625 TKYHTKRDASTPLRSTENGIVDQVLLTTNQEGLRFVKVRMRTTKVPQIGDKFASRHGQKG 684
Query: 67 T 67
T
Sbjct: 685 T 685
>gi|357216657|gb|AET71062.1| RNA polymerase II second largest subunit, partial [Coriolopsis cf.
byrsina FP105050sp]
Length = 659
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ ++RD ST L+++E GIVDQV++T N +G KF KIRVRS RIPQIGDKFASRHGQKG
Sbjct: 520 TRTHTRRDVSTPLKSTEQGIVDQVLITTNAEGQKFVKIRVRSTRIPQIGDKFASRHGQKG 579
Query: 67 T 67
T
Sbjct: 580 T 580
>gi|55583700|gb|AAV53369.1| RNA polymerase II second largest subunit [Pluteus romellii]
Length = 646
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ ++RD ST L+++E+GIVDQV+LT N +G KF K+RVRS R+PQIGDKFASRHGQKG
Sbjct: 468 TRTHTRRDVSTPLKSTESGIVDQVLLTTNSEGQKFVKVRVRSTRVPQIGDKFASRHGQKG 527
Query: 67 T 67
T
Sbjct: 528 T 528
>gi|88601066|gb|ABD46529.1| RNA polymerase II second largest subunit, partial [Tulasnella
violea]
Length = 676
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST L+++E GI+DQV+LT N +G KF KIRVRS RIPQ+GDKFASRHGQKG
Sbjct: 513 TQTHTKRDVSTPLKSTENGIIDQVLLTTNGEGLKFVKIRVRSTRIPQVGDKFASRHGQKG 572
Query: 67 T 67
T
Sbjct: 573 T 573
>gi|409691294|gb|AFV36638.1| RNA polymerase II second largest subunit, partial [Chapsa
alborosella]
Length = 290
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E+GIVD+V+LT N +G KF K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 137 TKNHTKRDASTPLRSTESGIVDRVLLTTNQEGLKFVKVRMRTTKIPQIGDKFASRHGQKG 196
Query: 67 T 67
T
Sbjct: 197 T 197
>gi|113957206|gb|ABI49109.1| RNA polymerase II second largest subunit [Pyxine subcinerea]
Length = 709
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/61 (63%), Positives = 53/61 (86%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E+G+VDQV+LT+N +G +F K+R+R+ ++PQIGDKFASRHGQKG
Sbjct: 535 TKLHNKRDASTPLRSTESGLVDQVLLTVNSEGLRFVKVRMRTTKVPQIGDKFASRHGQKG 594
Query: 67 T 67
T
Sbjct: 595 T 595
>gi|89274924|gb|ABD65903.1| RNA polymerase II second largest subunit, partial [Hydnellum
geogenium]
Length = 600
Score = 89.4 bits (220), Expect = 3e-16, Method: Composition-based stats.
Identities = 40/61 (65%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ ++RD ST L+++E+GI+DQV++T N +G KF K+RVRS RIPQIGDKFASRHGQKG
Sbjct: 523 TRTHTRRDVSTPLKSTESGIIDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKG 582
Query: 67 T 67
T
Sbjct: 583 T 583
>gi|406857912|gb|AFS64701.1| RNA polymerase II second largest subunit, partial [Chapsa patens]
Length = 305
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK SKRD ST LR++E GIVD+V+LT N +G KF K+R+R+ ++PQIGDKFASRHGQKG
Sbjct: 144 TKMHSKRDASTPLRSTENGIVDKVLLTTNQEGLKFVKVRMRTTKVPQIGDKFASRHGQKG 203
Query: 67 T 67
T
Sbjct: 204 T 204
>gi|328870070|gb|EGG18445.1| RNA polymerase II core subunit [Dictyostelium fasciculatum]
Length = 1565
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+R SK+D ST +R+SE G+VDQV+LT + DG KF K+RVRS+R PQIGDKF+SRHGQKG
Sbjct: 1277 TRRQSKKDSSTAMRSSENGVVDQVVLTTSGDGLKFTKVRVRSMRTPQIGDKFSSRHGQKG 1336
Query: 67 T 67
T
Sbjct: 1337 T 1337
>gi|406857728|gb|AFS64609.1| RNA polymerase II second largest subunit, partial [Thelotrema
diplotrema]
Length = 305
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK SKRD ST LR++E GIVD+V+LT N +G KF K+R+R+ ++PQIGDKFASRHGQKG
Sbjct: 144 TKLHSKRDASTPLRSTENGIVDKVLLTTNQEGLKFVKVRMRTTKVPQIGDKFASRHGQKG 203
Query: 67 T 67
T
Sbjct: 204 T 204
>gi|219564115|gb|ACL28241.1| RNA polymerase II second largest subunit, partial [Hymenoscyphus
fructigenus]
Length = 300
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E GIVDQV++T N +G +F K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 143 TKAHTKRDASTPLRSTENGIVDQVLITTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKG 202
Query: 67 T 67
T
Sbjct: 203 T 203
>gi|145340678|ref|XP_001415447.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144575670|gb|ABO93739.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 1174
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 53/61 (86%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
+KRFSK+D ST ++++ETGI+DQV+LT N G +F K+RVRS+R PQ+GDKF+SRHGQKG
Sbjct: 884 SKRFSKKDCSTGMKHAETGIIDQVLLTTNDQGLRFVKLRVRSMRTPQVGDKFSSRHGQKG 943
Query: 67 T 67
T
Sbjct: 944 T 944
>gi|308798899|ref|XP_003074229.1| DNA-directed RNA polymerase (ISS) [Ostreococcus tauri]
gi|116000401|emb|CAL50081.1| DNA-directed RNA polymerase (ISS) [Ostreococcus tauri]
Length = 999
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 53/61 (86%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
+KRFSK+D ST ++++ETGI+DQV+LT N G +F K+RVRS+R PQ+GDKF+SRHGQKG
Sbjct: 709 SKRFSKKDCSTGMKHAETGIIDQVLLTTNDQGLRFVKLRVRSMRTPQVGDKFSSRHGQKG 768
Query: 67 T 67
T
Sbjct: 769 T 769
>gi|46277300|gb|AAS86840.1| DNA-dependent RNA polymerase II [Ascobolus denudatus]
Length = 520
Score = 89.4 bits (220), Expect = 3e-16, Method: Composition-based stats.
Identities = 42/61 (68%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E GIVD+VMLT N G KF K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 378 TKYHTKRDVSTPLRSTENGIVDKVMLTTNASGLKFVKVRMRTTKIPQIGDKFASRHGQKG 437
Query: 67 T 67
T
Sbjct: 438 T 438
>gi|396941937|gb|AFN89685.1| RNA polymerase II, partial [cf. Ascoidea sp. NRRL Y-6762]
Length = 705
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E GIVDQV+LT N +G KF K+R+R+ ++PQIGDKFASRHGQKG
Sbjct: 618 TKFHTKRDASTPLRSTENGIVDQVLLTTNQEGLKFVKVRMRTTKVPQIGDKFASRHGQKG 677
Query: 67 T 67
T
Sbjct: 678 T 678
>gi|300394762|gb|ADK11919.1| DNA-directed RNA polymerase II subunit two, partial [Tapinella
atrotomentosa]
Length = 650
Score = 89.4 bits (220), Expect = 3e-16, Method: Composition-based stats.
Identities = 41/61 (67%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ ++RD ST L+++E GIVDQV+++ N +G KF KIRVRS RIPQIGDKFASRHGQKG
Sbjct: 503 TRTHTRRDVSTPLKSTENGIVDQVLISTNFEGQKFVKIRVRSTRIPQIGDKFASRHGQKG 562
Query: 67 T 67
T
Sbjct: 563 T 563
>gi|293601838|gb|ADE48323.1| RNA polymerase II [Morchella diminutiva]
gi|293601862|gb|ADE48193.1| RNA polymerase II, partial [Morchella sp. Mes-12]
gi|293601864|gb|ADE48194.1| RNA polymerase II, partial [Morchella virginiana]
gi|293601874|gb|ADE48199.1| RNA polymerase II, partial [Morchella diminutiva]
gi|293601876|gb|ADE48200.1| RNA polymerase II, partial [Morchella esculentoides]
gi|293601886|gb|ADE48205.1| RNA polymerase II, partial [Morchella sp. Mes-10]
gi|293601892|gb|ADE48208.1| RNA polymerase II, partial [Morchella steppicola]
gi|357065249|gb|AET52415.1| DNA-dependent RNA polymerase II, partial [Morchella esculentoides]
gi|357065251|gb|AET52416.1| DNA-dependent RNA polymerase II, partial [Morchella esculentoides]
gi|357065253|gb|AET52417.1| DNA-dependent RNA polymerase II, partial [Morchella esculentoides]
gi|408691389|gb|AFU82034.1| RNA polymerase II, partial [Morchella esculentoides]
gi|408691391|gb|AFU82035.1| RNA polymerase II, partial [Morchella diminutiva]
gi|408691397|gb|AFU82038.1| RNA polymerase II, partial [Morchella diminutiva]
gi|408691399|gb|AFU82039.1| RNA polymerase II, partial [Morchella diminutiva]
gi|408691401|gb|AFU82040.1| RNA polymerase II, partial [Morchella esculentoides]
gi|408691403|gb|AFU82041.1| RNA polymerase II, partial [Morchella diminutiva]
gi|408691405|gb|AFU82042.1| RNA polymerase II, partial [Morchella diminutiva]
gi|408691409|gb|AFU82044.1| RNA polymerase II, partial [Morchella esculentoides]
gi|408691441|gb|AFU82060.1| RNA polymerase II, partial [Morchella esculentoides]
gi|408691443|gb|AFU82061.1| RNA polymerase II, partial [Morchella esculentoides]
gi|408691447|gb|AFU82063.1| RNA polymerase II, partial [Morchella esculentoides]
gi|408691449|gb|AFU82064.1| RNA polymerase II, partial [Morchella esculentoides]
gi|408691451|gb|AFU82065.1| RNA polymerase II, partial [Morchella esculentoides]
gi|408691461|gb|AFU82070.1| RNA polymerase II, partial [Morchella esculentoides]
Length = 290
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/60 (70%), Positives = 50/60 (83%)
Query: 8 KRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
K +KRD ST LR++E GIVDQVMLT N +G KF K+R+R+ +IPQIGDKFASRHGQKGT
Sbjct: 135 KYHTKRDVSTPLRSTENGIVDQVMLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKGT 194
>gi|293601786|gb|ADE48297.1| RNA polymerase II [Morchella esculentoides]
gi|357065307|gb|AET52444.1| DNA-dependent RNA polymerase II, partial [Morchella esculentoides]
Length = 289
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/60 (70%), Positives = 50/60 (83%)
Query: 8 KRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
K +KRD ST LR++E GIVDQVMLT N +G KF K+R+R+ +IPQIGDKFASRHGQKGT
Sbjct: 135 KYHTKRDVSTPLRSTENGIVDQVMLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKGT 194
>gi|88976100|gb|ABD59031.1| RNA polymerase II second largest subunit, partial [Bolbitius
vitellinus]
Length = 674
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ ++RD ST L+++E+GIVDQV++T N +G KF KIRVRS RIPQIGDKFASRHGQKG
Sbjct: 517 TRTHTRRDVSTPLKSTESGIVDQVLITTNSEGQKFVKIRVRSTRIPQIGDKFASRHGQKG 576
Query: 67 T 67
T
Sbjct: 577 T 577
>gi|219564001|gb|ACL28184.1| RNA polymerase II second largest subunit, partial [Hyaloscypha sp.
A TL-2012]
Length = 267
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/66 (62%), Positives = 51/66 (77%)
Query: 2 HLEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASR 61
L TK KRD ST LR++E GIVDQV++T N +G +F K+R+R+ +IPQIGDKFASR
Sbjct: 135 ELXQXTKAHVKRDASTPLRSTENGIVDQVLITTNAEGLRFVKVRMRTTKIPQIGDKFASR 194
Query: 62 HGQKGT 67
HGQKGT
Sbjct: 195 HGQKGT 200
>gi|194320156|gb|ACF48302.1| DNA-dependent RNA polymerase II second largest subunit [Peltigera
sp. AFTOL 1838]
Length = 332
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK KRD ST LR++E GIVDQV+LT N +G +F K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 166 TKMHIKRDASTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKG 225
Query: 67 T 67
T
Sbjct: 226 T 226
>gi|120561259|gb|ABM27014.1| RNA polymerase II second largest subunit, partial [Allomyces
macrogynus]
Length = 867
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/57 (71%), Positives = 49/57 (85%)
Query: 11 SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
+K+D ST L+++E GIVD VMLT N DGYKF K+RVRS R+PQ+GDKFASRHGQKGT
Sbjct: 706 TKKDVSTSLKSTEQGIVDHVMLTTNNDGYKFVKVRVRSTRVPQMGDKFASRHGQKGT 762
>gi|94469433|gb|ABF20207.1| RNA polymerase II second largest subunit, partial [Schizophyllum
radiatum]
Length = 667
Score = 89.4 bits (220), Expect = 3e-16, Method: Composition-based stats.
Identities = 41/61 (67%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK ++RD ST L+++E+GI+DQV+LT N DG K ++RVRS RIPQIGDKFASRHGQKG
Sbjct: 517 TKNHTRRDVSTPLKSTESGIIDQVLLTTNEDGKKLIRVRVRSTRIPQIGDKFASRHGQKG 576
Query: 67 T 67
T
Sbjct: 577 T 577
>gi|406857802|gb|AFS64646.1| RNA polymerase II second largest subunit, partial [Chapsa
psoromica]
Length = 299
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK SKRD ST LR++E GIVD+V+LT N +G KF K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 138 TKLHSKRDASTPLRSTENGIVDRVLLTTNQEGLKFVKVRMRTTKIPQIGDKFASRHGQKG 197
Query: 67 T 67
T
Sbjct: 198 T 198
>gi|396941903|gb|AFN89669.1| RNA polymerase II, partial [Cephaloascus fragrans]
Length = 789
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST LR++E GIVDQV+LT N DG KF K+R+R+ ++PQIGDKFASRHGQKG
Sbjct: 635 TQYHTKRDASTPLRSTENGIVDQVLLTTNGDGSKFVKVRMRTTKVPQIGDKFASRHGQKG 694
Query: 67 T 67
T
Sbjct: 695 T 695
>gi|406857694|gb|AFS64592.1| RNA polymerase II second largest subunit, partial [Thelotrema
leucophthalmum]
Length = 270
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK SKRD ST LR++E GIVD+V+LT N +G KF K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 120 TKLHSKRDASTPLRSTENGIVDKVLLTTNQEGLKFVKVRMRTTKIPQIGDKFASRHGQKG 179
Query: 67 T 67
T
Sbjct: 180 T 180
>gi|396941847|gb|AFN89641.1| RNA polymerase II, partial [Pichia membranifaciens]
Length = 785
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR +E+GIVDQV+LT N +G KF K+R+R+ + PQIGDKFASRHGQKG
Sbjct: 631 TKYHTKRDASTPLRTTESGIVDQVLLTTNAEGLKFVKVRMRTTKTPQIGDKFASRHGQKG 690
Query: 67 T 67
T
Sbjct: 691 T 691
>gi|361128142|gb|EHL00094.1| putative DNA-directed RNA polymerase II subunit RPB2 [Glarea
lozoyensis 74030]
Length = 1263
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E GIVDQV++T N +G +F K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 966 TKAHTKRDASTPLRSTENGIVDQVLITTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKG 1025
Query: 67 T 67
T
Sbjct: 1026 T 1026
>gi|300394712|gb|ADK11894.1| DNA-directed RNA polymerase II subunit two, partial [Leucogyrophana
lichenicola]
Length = 664
Score = 89.0 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 41/61 (67%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ ++RD ST L+++E GIVDQV++T N +G KF K+RVRS RIPQIGDKFASRHGQKG
Sbjct: 504 TRTHTRRDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKG 563
Query: 67 T 67
T
Sbjct: 564 T 564
>gi|94410930|gb|ABF18584.1| RNA polymerase II second largest subunit, partial [Hygrocybe
miniata f. longipes]
Length = 670
Score = 89.0 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 41/61 (67%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ ++RD ST L+++E+GIVDQV++T N D KF KIRVR+ RIPQIGDKFASRHGQKG
Sbjct: 499 TRTHTRRDVSTPLKSTESGIVDQVLITTNADDQKFVKIRVRATRIPQIGDKFASRHGQKG 558
Query: 67 T 67
T
Sbjct: 559 T 559
>gi|52699882|gb|AAU87002.1| DNA-dependent RNA polymerase II second largest subunit [Sporastatia
testudinea]
Length = 700
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK KRD ST LR++E GIVDQV+LT N +G +F K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 524 TKLHVKRDASTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKG 583
Query: 67 T 67
T
Sbjct: 584 T 584
>gi|46411496|gb|AAS94318.1| RNA polymerase II [Ostropa barbara]
Length = 719
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E GIVDQV++T N +G +F K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 545 TKAHTKRDASTPLRSTENGIVDQVLITTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKG 604
Query: 67 T 67
T
Sbjct: 605 T 605
>gi|396941901|gb|AFN89668.1| RNA polymerase II, partial [Yamadazyma triangularis]
Length = 783
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST LR++E+G+VDQV+LT N DG KF K+R+R+ ++PQIGDKFASRHGQKG
Sbjct: 629 TQYHTKRDASTPLRSTESGLVDQVLLTTNGDGAKFVKVRMRTTKVPQIGDKFASRHGQKG 688
Query: 67 T 67
T
Sbjct: 689 T 689
>gi|396941928|gb|AFN89681.1| RNA polymerase II, partial [Spencermartinsiella europaea]
Length = 687
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
+K +KRD ST LR++E+GIVDQV+LT N +G KF K+R+R+ ++PQIGDKFASRHGQKG
Sbjct: 533 SKYHTKRDASTPLRSTESGIVDQVLLTTNQEGLKFVKVRMRTTKVPQIGDKFASRHGQKG 592
Query: 67 T 67
T
Sbjct: 593 T 593
>gi|317408993|gb|ADV17878.1| RNA polymerase II second largest subunit [Gloeophyllum striatum]
Length = 349
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ ++RD ST L+++E+GIVDQV++T N +G KF K+RVRS RIPQIGDKFASRHGQKG
Sbjct: 192 TRSHTRRDVSTALKSTESGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKG 251
Query: 67 T 67
T
Sbjct: 252 T 252
>gi|293601812|gb|ADE48310.1| RNA polymerase II [Morchella esculentoides]
gi|357065285|gb|AET52433.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mes-12]
gi|357065321|gb|AET52451.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mes-10]
Length = 291
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/60 (70%), Positives = 50/60 (83%)
Query: 8 KRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
K +KRD ST LR++E GIVDQVMLT N +G KF K+R+R+ +IPQIGDKFASRHGQKGT
Sbjct: 135 KYHTKRDVSTPLRSTENGIVDQVMLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKGT 194
>gi|396941939|gb|AFN89686.1| RNA polymerase II, partial [Yarrowia lipolytica]
Length = 780
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E GIVDQV+LT N +G +F K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 629 TKYHTKRDASTPLRSTENGIVDQVLLTTNQEGLRFVKVRMRTTKIPQIGDKFASRHGQKG 688
Query: 67 T 67
T
Sbjct: 689 T 689
>gi|406857700|gb|AFS64595.1| RNA polymerase II second largest subunit, partial [Thelotrema
suecicum]
Length = 305
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK SKRD ST LR++E GIVD+V+LT N +G KF K+R+R+ ++PQIGDKFASRHGQKG
Sbjct: 144 TKLHSKRDASTPLRSTENGIVDKVLLTTNQEGLKFVKVRMRTTKVPQIGDKFASRHGQKG 203
Query: 67 T 67
T
Sbjct: 204 T 204
>gi|396941859|gb|AFN89647.1| RNA polymerase II, partial [Metschnikowia agaves]
Length = 771
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ KRD ST LR++E+GIVDQV+LT N DG KF K+R+R+ ++PQIGDKFASRHGQKG
Sbjct: 617 TQYHVKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKVRMRTTKVPQIGDKFASRHGQKG 676
Query: 67 T 67
T
Sbjct: 677 T 677
>gi|384492102|gb|AFH96456.1| RNA polymerase II subunit 2, partial [Morchella populiphila]
Length = 184
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/60 (70%), Positives = 50/60 (83%)
Query: 8 KRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
K +KRD ST LR++E GIVDQVMLT N +G KF K+R+R+ +IPQIGDKFASRHGQKGT
Sbjct: 56 KFHTKRDVSTPLRSTENGIVDQVMLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKGT 115
>gi|320172586|gb|ADW24176.1| RNA polymerase II second largest subunit [Gloeophyllum sepiarium]
Length = 341
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ ++RD ST L+++E+GIVDQV++T N +G KF K+RVRS RIPQIGDKFASRHGQKG
Sbjct: 184 TRSHTRRDVSTALKSTESGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKG 243
Query: 67 T 67
T
Sbjct: 244 T 244
>gi|300394766|gb|ADK11921.1| DNA-directed RNA polymerase II subunit two, partial [Plicaturopsis
crispa]
Length = 629
Score = 89.0 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 41/61 (67%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ ++RD ST L+++E GIVDQV++T N +G KF K+RVRS RIPQIGDKFASRHGQKG
Sbjct: 519 TRTHTRRDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSSRIPQIGDKFASRHGQKG 578
Query: 67 T 67
T
Sbjct: 579 T 579
>gi|294721610|gb|ADF32952.1| RNA polymerase II second largest subunit [Sarcinomyces crustaceus]
Length = 241
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ KRD ST LR++E+GI+DQV+LT NV+G KF K+R R+ +IPQIGDKFASRHGQKG
Sbjct: 111 TQLHVKRDTSTPLRSTESGIIDQVLLTTNVEGLKFVKVRTRTTKIPQIGDKFASRHGQKG 170
Query: 67 T 67
T
Sbjct: 171 T 171
>gi|119644196|gb|ABL85612.1| RNA polymerase II second largest subunit [Physconia muscigena]
Length = 718
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/61 (63%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E+G+VDQV+LT N +G +F K+R+R+ ++PQIGDKFASRHGQKG
Sbjct: 544 TKLHTKRDASTPLRSTESGLVDQVLLTTNAEGLRFVKVRMRTTKVPQIGDKFASRHGQKG 603
Query: 67 T 67
T
Sbjct: 604 T 604
>gi|281204919|gb|EFA79113.1| RNA polymerase II core subunit [Polysphondylium pallidum PN500]
Length = 1965
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/61 (70%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+R SKRD ST +R+SE GIVD V+LT + DG KF K+RVRS+R PQIGDKF+SRHGQKG
Sbjct: 1262 TRRQSKRDSSTAMRSSENGIVDSVILTTSGDGLKFTKVRVRSMRTPQIGDKFSSRHGQKG 1321
Query: 67 T 67
T
Sbjct: 1322 T 1322
>gi|52699820|gb|AAU86972.1| DNA-dependent RNA polymerase II second largest subunit [Gyromitra
esculenta]
Length = 699
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 53/64 (82%), Gaps = 1/64 (1%)
Query: 5 GTTKRF-SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
G ++F +KRD ST LR++E GIVDQVMLT N +G KF K+R+R+ +IPQIGDKFASRHG
Sbjct: 523 GQRQKFHTKRDVSTPLRSTENGIVDQVMLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHG 582
Query: 64 QKGT 67
QKGT
Sbjct: 583 QKGT 586
>gi|409691357|gb|AFV36667.1| RNA polymerase II second largest subunit, partial [Thelotrema
suecicum]
Length = 289
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK SKRD ST LR++E GIVD+V+LT N +G KF K+R+R+ ++PQIGDKFASRHGQKG
Sbjct: 135 TKLHSKRDASTPLRSTENGIVDKVLLTTNQEGLKFVKVRMRTTKVPQIGDKFASRHGQKG 194
Query: 67 T 67
T
Sbjct: 195 T 195
>gi|312204372|gb|ADQ47503.1| RNA polymerase II second largest subunit [Stictis mollis]
Length = 692
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E+G+VD+VMLT N +G KF K+R R+ ++PQIGDKFASRHGQKG
Sbjct: 550 TKLHTKRDASTPLRSTESGLVDKVMLTTNAEGLKFVKVRTRTTKLPQIGDKFASRHGQKG 609
Query: 67 T 67
T
Sbjct: 610 T 610
>gi|219564005|gb|ACL28186.1| RNA polymerase II second largest subunit, partial [Monascostroma
sphagnophilum]
Length = 287
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK KRD ST LR++E GIVDQV+LT NV+G KF K+R R+ ++PQIGDKFASRHGQKG
Sbjct: 140 TKLHVKRDVSTPLRSTENGIVDQVLLTTNVEGLKFVKVRTRTTKVPQIGDKFASRHGQKG 199
Query: 67 T 67
T
Sbjct: 200 T 200
>gi|451350747|gb|AGF39128.1| RNA polymerase II second largest subunit, partial [Thelotrema
suecicum]
Length = 293
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK SKRD ST LR++E GIVD+V+LT N +G KF K+R+R+ ++PQIGDKFASRHGQKG
Sbjct: 135 TKLHSKRDASTPLRSTENGIVDKVLLTTNQEGLKFVKVRMRTTKVPQIGDKFASRHGQKG 194
Query: 67 T 67
T
Sbjct: 195 T 195
>gi|406857836|gb|AFS64663.1| RNA polymerase II second largest subunit, partial [Compositrema
cerebriforme]
Length = 305
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK SKRD ST LR++E GIVD+V+LT N +G KF K+R+R+ ++PQIGDKFASRHGQKG
Sbjct: 144 TKLHSKRDASTPLRSTENGIVDKVLLTTNQEGLKFVKVRMRTTKVPQIGDKFASRHGQKG 203
Query: 67 T 67
T
Sbjct: 204 T 204
>gi|293601758|gb|ADE48283.1| RNA polymerase II [Morchella diminutiva]
gi|293601770|gb|ADE48289.1| RNA polymerase II [Morchella virginiana]
gi|293601772|gb|ADE48290.1| RNA polymerase II [Morchella esculentoides]
gi|293601776|gb|ADE48292.1| RNA polymerase II [Morchella diminutiva]
gi|293601788|gb|ADE48298.1| RNA polymerase II [Morchella diminutiva]
gi|293601790|gb|ADE48299.1| RNA polymerase II [Morchella esculentoides]
gi|293601796|gb|ADE48302.1| RNA polymerase II [Morchella esculentoides]
gi|293601804|gb|ADE48306.1| RNA polymerase II [Morchella diminutiva]
gi|293601814|gb|ADE48311.1| RNA polymerase II [Morchella virginiana]
gi|293601816|gb|ADE48312.1| RNA polymerase II [Morchella diminutiva]
gi|293601818|gb|ADE48313.1| RNA polymerase II [Morchella esculentoides]
gi|293601822|gb|ADE48315.1| RNA polymerase II [Morchella diminutiva]
gi|293601824|gb|ADE48316.1| RNA polymerase II [Morchella diminutiva]
gi|293601828|gb|ADE48318.1| RNA polymerase II [Morchella esculentoides]
gi|293601830|gb|ADE48319.1| RNA polymerase II [Morchella esculentoides]
gi|293601832|gb|ADE48320.1| RNA polymerase II [Morchella virginiana]
gi|293601834|gb|ADE48321.1| RNA polymerase II [Morchella esculentoides]
gi|293601836|gb|ADE48322.1| RNA polymerase II [Morchella diminutiva]
gi|293601842|gb|ADE48325.1| RNA polymerase II [Morchella esculentoides]
gi|293601844|gb|ADE48326.1| RNA polymerase II [Morchella esculentoides]
gi|293601846|gb|ADE48327.1| RNA polymerase II [Morchella virginiana]
gi|293601848|gb|ADE48328.1| RNA polymerase II [Morchella esculentoides]
gi|293601850|gb|ADE48329.1| RNA polymerase II [Morchella diminutiva]
gi|293601852|gb|ADE48330.1| RNA polymerase II [Morchella esculentoides]
gi|293601854|gb|ADE48331.1| RNA polymerase II [Morchella esculentoides]
gi|293601856|gb|ADE48332.1| RNA polymerase II [Morchella esculentoides]
gi|293601860|gb|ADE48334.1| RNA polymerase II [Morchella steppicola]
gi|357065281|gb|AET52431.1| DNA-dependent RNA polymerase II, partial [Morchella diminutiva]
gi|357065293|gb|AET52437.1| DNA-dependent RNA polymerase II, partial [Morchella diminutiva]
gi|357065297|gb|AET52439.1| DNA-dependent RNA polymerase II, partial [Morchella esculentoides]
gi|357065329|gb|AET52455.1| DNA-dependent RNA polymerase II, partial [Morchella virginiana]
gi|357065331|gb|AET52456.1| DNA-dependent RNA polymerase II, partial [Morchella esculentoides]
gi|357065333|gb|AET52457.1| DNA-dependent RNA polymerase II, partial [Morchella diminutiva]
gi|357065337|gb|AET52459.1| DNA-dependent RNA polymerase II, partial [Morchella esculentoides]
gi|357065339|gb|AET52460.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mes-1]
gi|357065341|gb|AET52461.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mes-1]
Length = 293
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/60 (70%), Positives = 50/60 (83%)
Query: 8 KRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
K +KRD ST LR++E GIVDQVMLT N +G KF K+R+R+ +IPQIGDKFASRHGQKGT
Sbjct: 135 KYHTKRDVSTPLRSTENGIVDQVMLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKGT 194
>gi|89274896|gb|ABD65889.1| RNA polymerase II second largest subunit, partial [Phaeolus
schweinitzii]
Length = 887
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ ++RD ST L+++E+GI+DQV++T N +G KF KIRVRS R+PQIGDKFASRHGQKG
Sbjct: 693 TRAHTRRDVSTPLKSTESGIIDQVLITTNAEGQKFVKIRVRSTRVPQIGDKFASRHGQKG 752
Query: 67 T 67
T
Sbjct: 753 T 753
>gi|409691339|gb|AFV36658.1| RNA polymerase II second largest subunit, partial [Thelotrema
monosporoides]
Length = 289
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK SKRD ST LR++E GIVD+V+LT N +G KF K+R+R+ ++PQIGDKFASRHGQKG
Sbjct: 135 TKLHSKRDASTPLRSTENGIVDKVLLTTNQEGLKFVKVRMRTTKVPQIGDKFASRHGQKG 194
Query: 67 T 67
T
Sbjct: 195 T 195
>gi|406857736|gb|AFS64613.1| RNA polymerase II second largest subunit, partial [Thelotrema
adjectum]
Length = 305
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK SKRD ST LR++E GIVD+V+LT N +G KF K+R+R+ ++PQIGDKFASRHGQKG
Sbjct: 144 TKLHSKRDASTPLRSTENGIVDKVLLTTNQEGLKFVKVRMRTTKVPQIGDKFASRHGQKG 203
Query: 67 T 67
T
Sbjct: 204 T 204
>gi|111054468|gb|ABH04316.1| RNA polymerase II second largest subunit [Paraglomus occultum]
Length = 586
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/57 (71%), Positives = 49/57 (85%)
Query: 11 SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
+KRD ST LR++E+GIVD VM+T N +G KF K+RVRS RIPQ+GDKFASRHGQKGT
Sbjct: 530 TKRDASTPLRSTESGIVDSVMVTTNQEGMKFVKVRVRSTRIPQMGDKFASRHGQKGT 586
>gi|406857698|gb|AFS64594.1| RNA polymerase II second largest subunit, partial [Thelotrema
suecicum]
Length = 305
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK SKRD ST LR++E GIVD+V+LT N +G KF K+R+R+ ++PQIGDKFASRHGQKG
Sbjct: 144 TKLHSKRDASTPLRSTENGIVDKVLLTTNQEGLKFVKVRMRTTKVPQIGDKFASRHGQKG 203
Query: 67 T 67
T
Sbjct: 204 T 204
>gi|156627827|gb|ABU88901.1| RNA polymerase II second largest subunit [Phymatotrichopsis
omnivora]
gi|156627829|gb|ABU88902.1| RNA polymerase II second largest subunit [Phymatotrichopsis
omnivora]
gi|156627831|gb|ABU88903.1| RNA polymerase II second largest subunit [Phymatotrichopsis
omnivora]
gi|156627833|gb|ABU88904.1| RNA polymerase II second largest subunit [Phymatotrichopsis
omnivora]
Length = 884
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/60 (68%), Positives = 50/60 (83%)
Query: 8 KRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
K +KRD ST LR++E GIVDQVMLT N +G KF K+R+R+ ++PQIGDKFASRHGQKGT
Sbjct: 720 KYHTKRDVSTPLRSTENGIVDQVMLTTNAEGLKFVKVRMRTTKVPQIGDKFASRHGQKGT 779
>gi|46277308|gb|AAS86844.1| DNA-dependent RNA polymerase II [Marcelleina persoonii]
Length = 561
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E GIVDQV++T+N +G KF K+R+R+ ++PQIGDKFASRHGQKG
Sbjct: 397 TKYHTKRDASTPLRSTENGIVDQVLITVNGEGLKFVKVRMRTTKVPQIGDKFASRHGQKG 456
Query: 67 T 67
T
Sbjct: 457 T 457
>gi|409691355|gb|AFV36666.1| RNA polymerase II second largest subunit, partial [Thelotrema aff.
subtile THSU1608]
Length = 289
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK SKRD ST LR++E GIVD+V+LT N +G KF K+R+R+ ++PQIGDKFASRHGQKG
Sbjct: 135 TKLHSKRDASTPLRSTENGIVDKVLLTTNQEGLKFVKVRMRTTKVPQIGDKFASRHGQKG 194
Query: 67 T 67
T
Sbjct: 195 T 195
>gi|406857702|gb|AFS64596.1| RNA polymerase II second largest subunit, partial [Thelotrema sp.
RL-2012a]
Length = 305
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK SKRD ST LR++E GIVD+V+LT N +G KF K+R+R+ ++PQIGDKFASRHGQKG
Sbjct: 144 TKLHSKRDASTPLRSTENGIVDKVLLTTNQEGLKFVKVRMRTTKVPQIGDKFASRHGQKG 203
Query: 67 T 67
T
Sbjct: 204 T 204
>gi|357216669|gb|AET71068.1| RNA polymerase II second largest subunit, partial [Trametopsis
cervina]
Length = 676
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ ++RD ST L+++E+GI+DQV++T N +G KF KIRVRS R+PQIGDKFASRHGQKG
Sbjct: 537 TRTHTRRDVSTPLKSTESGIIDQVLITTNAEGQKFVKIRVRSTRVPQIGDKFASRHGQKG 596
Query: 67 T 67
T
Sbjct: 597 T 597
>gi|297528145|gb|ADI46117.1| DNA-dependent RNA polymerase II [Morchella sp. Mel-20]
Length = 244
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 53/64 (82%), Gaps = 1/64 (1%)
Query: 5 GTTKRF-SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
G ++F +KRD ST LR++E GIVDQVMLT N +G KF K+R+R+ +IPQIGDKFASRHG
Sbjct: 147 GQRQKFHTKRDVSTPLRSTENGIVDQVMLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHG 206
Query: 64 QKGT 67
QKGT
Sbjct: 207 QKGT 210
>gi|396941787|gb|AFN89611.1| RNA polymerase II, partial [Starmera amethionina]
Length = 770
Score = 89.0 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 39/57 (68%), Positives = 50/57 (87%)
Query: 11 SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
+KRD ST LR++E+GIVDQV++T N +G KF K+RVR+ ++PQIGDKFASRHGQKGT
Sbjct: 620 TKRDASTPLRSTESGIVDQVLITTNQEGLKFVKVRVRTTKVPQIGDKFASRHGQKGT 676
>gi|357216663|gb|AET71065.1| RNA polymerase II second largest subunit, partial [Lopharia
cinerascens]
Length = 630
Score = 89.0 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 41/61 (67%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST L+++E GIVDQV++T N +G KF KIRVRS R+PQ GDKFASRHGQKG
Sbjct: 520 TRLHTKRDVSTPLKSTEQGIVDQVLITTNAEGQKFVKIRVRSTRVPQTGDKFASRHGQKG 579
Query: 67 T 67
T
Sbjct: 580 T 580
>gi|46277306|gb|AAS86843.1| DNA-dependent RNA polymerase II [Marcelleina persoonii]
Length = 560
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E GIVDQV++T+N +G KF K+R+R+ ++PQIGDKFASRHGQKG
Sbjct: 397 TKYHTKRDASTPLRSTENGIVDQVLITVNGEGLKFVKVRMRTTKVPQIGDKFASRHGQKG 456
Query: 67 T 67
T
Sbjct: 457 T 457
>gi|45545359|gb|AAS67527.1| DNA-dependent RNA polymerase II second largest subunit, partial
[Aureobasidium pullulans]
Length = 937
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/60 (68%), Positives = 51/60 (85%)
Query: 8 KRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
K+ KRD ST LR++E+GIVDQVMLT DG++F K+RVR+ ++PQIGDKFASRHGQKGT
Sbjct: 737 KQHVKRDVSTPLRSTESGIVDQVMLTTTSDGHRFAKVRVRTTKVPQIGDKFASRHGQKGT 796
>gi|406857814|gb|AFS64652.1| RNA polymerase II second largest subunit, partial [Thelotrema
macrosporum]
Length = 305
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK SKRD ST LR++E GIVD+V+LT N +G KF K+R+R+ ++PQIGDKFASRHGQKG
Sbjct: 144 TKLHSKRDASTPLRSTENGIVDKVLLTTNQEGLKFVKVRMRTTKVPQIGDKFASRHGQKG 203
Query: 67 T 67
T
Sbjct: 204 T 204
>gi|46277298|gb|AAS86839.1| DNA-dependent RNA polymerase II [Ascobolus carbonarius]
Length = 555
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E GIVD+VMLT N G KF K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 391 TKYHTKRDVSTPLRSTENGIVDKVMLTTNASGLKFVKVRMRTTKIPQIGDKFASRHGQKG 450
Query: 67 T 67
T
Sbjct: 451 T 451
>gi|46277372|gb|AAS86876.1| DNA-dependent RNA polymerase II [Peziza echinospora]
Length = 541
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E GIVDQVM+T N +G KF K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 384 TKXHTKRDVSTPLRSTENGIVDQVMVTTNQEGLKFVKVRMRTTKIPQIGDKFASRHGQKG 443
Query: 67 T 67
T
Sbjct: 444 T 444
>gi|88976114|gb|ABD59033.1| RNA polymerase II second largest subunit, partial [Clavaria
inaequalis]
Length = 667
Score = 89.0 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 38/61 (62%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST L+++E G++DQV++T N +G KF K+R+RS+R+PQIGDKFASRHGQKG
Sbjct: 511 TRSHTKRDVSTPLKSTENGVIDQVLITTNSEGQKFVKVRLRSIRVPQIGDKFASRHGQKG 570
Query: 67 T 67
T
Sbjct: 571 T 571
>gi|396941957|gb|AFN89695.1| RNA polymerase II, partial [Trigonopsis variabilis]
Length = 757
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E+GIVDQV+LT N +G +F K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 603 TKFHTKRDASTPLRSTESGIVDQVLLTTNQEGLRFVKVRMRTTKIPQIGDKFASRHGQKG 662
Query: 67 T 67
T
Sbjct: 663 T 663
>gi|312204376|gb|ADQ47505.1| RNA polymerase II second largest subunit [Thelotrema saxatile]
Length = 291
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK SKRD ST LR++E GIVD+V+LT N +G KF K+R+R+ ++PQIGDKFASRHGQKG
Sbjct: 135 TKLHSKRDASTPLRSTENGIVDKVLLTTNQEGLKFVKVRMRTTKVPQIGDKFASRHGQKG 194
Query: 67 T 67
T
Sbjct: 195 T 195
>gi|309753166|gb|ADO85606.1| DNA-dependent RNA polymerase II, partial [Morchella elata]
gi|309753168|gb|ADO85607.1| DNA-dependent RNA polymerase II, partial [Morchella elata]
gi|309753170|gb|ADO85608.1| DNA-dependent RNA polymerase II, partial [Morchella elata]
Length = 256
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 53/64 (82%), Gaps = 1/64 (1%)
Query: 5 GTTKRF-SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
G ++F +KRD ST LR++E GIVDQVMLT N +G KF K+R+R+ +IPQIGDKFASRHG
Sbjct: 142 GQRQKFHTKRDVSTPLRSTENGIVDQVMLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHG 201
Query: 64 QKGT 67
QKGT
Sbjct: 202 QKGT 205
>gi|194320223|gb|ACF48345.1| DNA-dependent RNA polymerase II second largest subunit [Squamarina
cartilaginea]
Length = 317
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK KRD ST LR++E GIVDQV+L+ N DG +F K+R+R+ ++PQIGDKFASRHGQKG
Sbjct: 150 TKLHVKRDASTPLRSTENGIVDQVLLSTNADGLRFAKVRMRTTKVPQIGDKFASRHGQKG 209
Query: 67 T 67
T
Sbjct: 210 T 210
>gi|94410934|gb|ABF18585.1| RNA polymerase II second largest subunit, partial [Hygrophorus
pudorinus]
Length = 691
Score = 89.0 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 40/61 (65%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ ++RD ST L+++E GIVDQV++T N +G KF K+RVRS R+PQIGDKFASRHGQKG
Sbjct: 521 TRTHTRRDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTRVPQIGDKFASRHGQKG 580
Query: 67 T 67
T
Sbjct: 581 T 581
>gi|406857730|gb|AFS64610.1| RNA polymerase II second largest subunit, partial [Thelotrema
adjectum]
Length = 305
Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK SKRD ST LR++E GIVD+V+LT N +G KF K+R+R+ ++PQIGDKFASRHGQKG
Sbjct: 144 TKLHSKRDASTPLRSTENGIVDKVLLTTNQEGLKFVKVRMRTTKVPQIGDKFASRHGQKG 203
Query: 67 T 67
T
Sbjct: 204 T 204
>gi|292606612|gb|ADE34122.1| RNA polymerase II second largest subunit [Dothideomycetes sp. TRN
77]
Length = 287
Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK KRD ST LR++E GIVDQV+LT NV+G KF K+R R+ ++PQIGDKFASRHGQKG
Sbjct: 137 TKLHVKRDVSTPLRSTENGIVDQVLLTTNVEGLKFVKVRTRTTKVPQIGDKFASRHGQKG 196
Query: 67 T 67
T
Sbjct: 197 T 197
>gi|406857866|gb|AFS64678.1| RNA polymerase II second largest subunit, partial [Wirthiotrema
trypaneoides]
Length = 305
Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK SKRD ST LR++E GIVD+V+LT N +G KF K+R+R+ ++PQIGDKFASRHGQKG
Sbjct: 144 TKLHSKRDASTPLRSTENGIVDKVLLTTNQEGLKFVKVRMRTTKVPQIGDKFASRHGQKG 203
Query: 67 T 67
T
Sbjct: 204 T 204
>gi|320172578|gb|ADW24172.1| RNA polymerase II second largest subunit [Boreostereum radiatum]
Length = 316
Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ ++RD ST L+++E+GIVDQV++T N +G KF K+RVRS R+PQIGDKFASRHGQKG
Sbjct: 167 TRTHTRRDVSTALKSTESGIVDQVLITTNSEGQKFVKVRVRSTRVPQIGDKFASRHGQKG 226
Query: 67 T 67
T
Sbjct: 227 T 227
>gi|293601676|gb|ADE48242.1| RNA polymerase II [Morchella punctipes]
Length = 255
Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 53/64 (82%), Gaps = 1/64 (1%)
Query: 5 GTTKRF-SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
G ++F +KRD ST LR++E GIVDQVMLT N +G KF K+R+R+ +IPQIGDKFASRHG
Sbjct: 137 GQRQKFHTKRDVSTPLRSTENGIVDQVMLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHG 196
Query: 64 QKGT 67
QKGT
Sbjct: 197 QKGT 200
>gi|406857688|gb|AFS64589.1| RNA polymerase II second largest subunit, partial [Thelotrema
diplotrema]
gi|406857742|gb|AFS64616.1| RNA polymerase II second largest subunit, partial [Thelotrema sp.
RL-2012b]
gi|406857746|gb|AFS64618.1| RNA polymerase II second largest subunit, partial [Thelotrema sp.
RL-2012b]
Length = 305
Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK SKRD ST LR++E GIVD+V+LT N +G KF K+R+R+ ++PQIGDKFASRHGQKG
Sbjct: 144 TKLHSKRDASTPLRSTENGIVDKVLLTTNQEGLKFVKVRMRTTKVPQIGDKFASRHGQKG 203
Query: 67 T 67
T
Sbjct: 204 T 204
>gi|300394674|gb|ADK11875.1| DNA-directed RNA polymerase II subunit two, partial [Amylocorticium
cebennense]
Length = 689
Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ ++RD ST L+++ETGIVDQV++T N +G KF K+RVR+ RIPQIGDKFASRHGQKG
Sbjct: 527 TRTHTRRDVSTPLKSTETGIVDQVLITTNSEGQKFVKVRVRATRIPQIGDKFASRHGQKG 586
Query: 67 T 67
T
Sbjct: 587 T 587
>gi|52699849|gb|AAU86986.1| DNA-dependent RNA polymerase II second largest subunit [Gyalecta
hypoleuca]
Length = 705
Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E GIVD+VM+T N +G KF K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 531 TKFHTKRDASTPLRSTENGIVDKVMVTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKG 590
Query: 67 T 67
T
Sbjct: 591 T 591
>gi|45120527|gb|AAS55049.1| RNA polymerase II second largest subunit [Heterobasidion annosum]
Length = 235
Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/57 (71%), Positives = 50/57 (87%)
Query: 11 SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
++RD ST L+++E+GIVDQV++T N DG KF K+RVRS RIPQIGDKFASRHGQKGT
Sbjct: 120 TRRDVSTPLKSTESGIVDQVLITTNSDGQKFVKVRVRSTRIPQIGDKFASRHGQKGT 176
>gi|406857916|gb|AFS64703.1| RNA polymerase II second largest subunit, partial [Chapsa patens]
Length = 305
Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E GIVD+V+LT N +G KF K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 144 TKMHTKRDASTPLRSTENGIVDKVLLTTNQEGLKFVKVRMRTTKIPQIGDKFASRHGQKG 203
Query: 67 T 67
T
Sbjct: 204 T 204
>gi|396941885|gb|AFN89660.1| RNA polymerase II, partial [Schwanniomyces etchellsii]
Length = 782
Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ KRD ST LR++E+GIVDQV+LT N DG KF K+R+R+ ++PQIGDKFASRHGQKG
Sbjct: 628 TQYHVKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKVRMRTTKVPQIGDKFASRHGQKG 687
Query: 67 T 67
T
Sbjct: 688 T 688
>gi|389626335|ref|XP_003710821.1| DNA-directed RNA polymerase II subunit RPB2 [Magnaporthe oryzae
70-15]
gi|351650350|gb|EHA58209.1| DNA-directed RNA polymerase II subunit RPB2 [Magnaporthe oryzae
70-15]
gi|440465319|gb|ELQ34645.1| DNA-directed RNA polymerase II subunit RPB2 [Magnaporthe oryzae Y34]
gi|440478473|gb|ELQ59304.1| DNA-directed RNA polymerase II subunit RPB2 [Magnaporthe oryzae P131]
Length = 1276
Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T + +KRD ST LR++E+GIVDQV++T N DG K+ K+RVR+ +IPQIGDKFASRHGQKG
Sbjct: 979 TVQHTKRDASTPLRSTESGIVDQVIVTTNQDGLKYVKVRVRTTKIPQIGDKFASRHGQKG 1038
Query: 67 T 67
T
Sbjct: 1039 T 1039
>gi|357064957|gb|AET52269.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mel-20]
Length = 245
Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 53/64 (82%), Gaps = 1/64 (1%)
Query: 5 GTTKRF-SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
G ++F +KRD ST LR++E GIVDQVMLT N +G KF K+R+R+ +IPQIGDKFASRHG
Sbjct: 131 GQRQKFHTKRDVSTPLRSTENGIVDQVMLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHG 190
Query: 64 QKGT 67
QKGT
Sbjct: 191 QKGT 194
>gi|194320168|gb|ACF48310.1| DNA-dependent RNA polymerase II second largest subunit [Lecidella
elaeochroma]
Length = 317
Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E GIVDQV+++ N DG +F K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 150 TKAHTKRDTSTPLRSTENGIVDQVLMSTNADGLRFVKVRMRTTKIPQIGDKFASRHGQKG 209
Query: 67 T 67
T
Sbjct: 210 T 210
>gi|402294651|gb|AFQ55279.1| DNA-directed RNA polymerase II [Peltigera membranacea]
Length = 1255
Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK KRD ST LR++E GIVDQV+LT N +G +F K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 958 TKMHIKRDASTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKG 1017
Query: 67 T 67
T
Sbjct: 1018 T 1018
>gi|396941835|gb|AFN89635.1| RNA polymerase II, partial [Kluyveromyces marxianus]
Length = 765
Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/57 (70%), Positives = 49/57 (85%)
Query: 11 SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
SKRD ST LR++E GIVDQV++T N +G KF K+RVR+ ++PQIGDKFASRHGQKGT
Sbjct: 615 SKRDASTPLRSTENGIVDQVLITTNQEGLKFVKVRVRTTKVPQIGDKFASRHGQKGT 671
>gi|357064569|gb|AET52105.1| DNA-dependent RNA polymerase II, partial [Morchella septimelata]
Length = 277
Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 53/64 (82%), Gaps = 1/64 (1%)
Query: 5 GTTKRF-SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
G ++F +KRD ST LR++E GIVDQVMLT N +G KF K+R+R+ +IPQIGDKFASRHG
Sbjct: 131 GQRQKFHTKRDVSTPLRSTENGIVDQVMLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHG 190
Query: 64 QKGT 67
QKGT
Sbjct: 191 QKGT 194
>gi|194320141|gb|ACF48292.1| DNA-dependent RNA polymerase II second largest subunit [Squamarina
gypsacea]
Length = 317
Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK KRD ST LR++E GIVDQV+L+ N DG +F K+R+R+ ++PQIGDKFASRHGQKG
Sbjct: 150 TKLHVKRDASTPLRSTENGIVDQVLLSTNADGLRFAKVRMRTTKVPQIGDKFASRHGQKG 209
Query: 67 T 67
T
Sbjct: 210 T 210
>gi|45545341|gb|AAS67518.1| DNA-dependent RNA polymerase II second largest subunit, partial
[Peltigera membranacea]
Length = 895
Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK KRD ST LR++E GIVDQV+LT N +G +F K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 727 TKMHIKRDASTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKG 786
Query: 67 T 67
T
Sbjct: 787 T 787
>gi|402294653|gb|AFQ55280.1| DNA-directed RNA polymerase II [Peltigera malacea]
Length = 1255
Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK KRD ST LR++E GIVDQV+LT N +G +F K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 958 TKLHVKRDASTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKG 1017
Query: 67 T 67
T
Sbjct: 1018 T 1018
>gi|103001775|gb|ABF71521.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
chlorophanum]
Length = 697
Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK KRD ST LR++E GIVDQV+LT N +G KF K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 527 TKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKG 586
Query: 67 T 67
T
Sbjct: 587 T 587
>gi|103001255|gb|ABF71499.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
chlorophanum]
Length = 691
Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK KRD ST LR++E GIVDQV+LT N +G KF K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 530 TKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKG 589
Query: 67 T 67
T
Sbjct: 590 T 590
>gi|46411500|gb|AAS94320.1| RNA polymerase II [Peltigera degenii]
Length = 632
Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK KRD ST LR++E GIVDQV+LT N +G +F K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 538 TKMHIKRDASTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKG 597
Query: 67 T 67
T
Sbjct: 598 T 598
>gi|300394730|gb|ADK11903.1| DNA-directed RNA polymerase II subunit two, partial [Pisolithus
arhizus]
Length = 321
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ ++RD ST L+++E+GIVDQV++T N +G KF K+RVRS RIPQIGDKFASRHGQKG
Sbjct: 192 TRTHTRRDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKG 251
Query: 67 T 67
T
Sbjct: 252 T 252
>gi|293601716|gb|ADE48262.1| RNA polymerase II [Morchella septimelata]
gi|293601746|gb|ADE48277.1| RNA polymerase II [Morchella septimelata]
Length = 286
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 53/64 (82%), Gaps = 1/64 (1%)
Query: 5 GTTKRF-SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
G ++F +KRD ST LR++E GIVDQVMLT N +G KF K+R+R+ +IPQIGDKFASRHG
Sbjct: 137 GQRQKFHTKRDVSTPLRSTENGIVDQVMLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHG 196
Query: 64 QKGT 67
QKGT
Sbjct: 197 QKGT 200
>gi|293601710|gb|ADE48259.1| RNA polymerase II [Morchella importuna]
Length = 288
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 53/64 (82%), Gaps = 1/64 (1%)
Query: 5 GTTKRF-SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
G ++F +KRD ST LR++E GIVDQVMLT N +G KF K+R+R+ +IPQIGDKFASRHG
Sbjct: 137 GQRQKFHTKRDVSTPLRSTENGIVDQVMLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHG 196
Query: 64 QKGT 67
QKGT
Sbjct: 197 QKGT 200
>gi|94410928|gb|ABF18583.1| RNA polymerase II second largest subunit, partial [Hygrocybe
coccinea]
Length = 655
Score = 88.6 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 40/61 (65%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ ++RD ST L+++E GIVDQV++T N +G KF KIRVR+ R+PQIGDKFASRHGQKG
Sbjct: 530 TRTHTRRDVSTPLKSTENGIVDQVLITTNSEGQKFVKIRVRATRVPQIGDKFASRHGQKG 589
Query: 67 T 67
T
Sbjct: 590 T 590
>gi|55584698|gb|AAV53580.1| RNA polymerase II second largest subunit [Rhodocollybia maculata]
Length = 721
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ ++RD ST L+++E+GIVDQV++T N +G KF KIRVRS RIPQIGDKFASRHGQKG
Sbjct: 520 TRTHTRRDVSTPLKSTESGIVDQVLITTNSEGRKFVKIRVRSTRIPQIGDKFASRHGQKG 579
Query: 67 T 67
T
Sbjct: 580 T 580
>gi|384492106|gb|AFH96458.1| RNA polymerase II subunit 2, partial [Morchella importuna]
Length = 285
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 53/64 (82%), Gaps = 1/64 (1%)
Query: 5 GTTKRF-SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
G ++F +KRD ST LR++E GIVDQVMLT N +G KF K+R+R+ +IPQIGDKFASRHG
Sbjct: 134 GQRQKFHTKRDVSTPLRSTENGIVDQVMLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHG 193
Query: 64 QKGT 67
QKGT
Sbjct: 194 QKGT 197
>gi|344323318|gb|AEN14442.1| DNA-dependent RNA polymerase II second largest subunit [Lentinula
edodes]
Length = 1228
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ ++RD ST L+++E+GIVDQV++T N +G KF KIRVRS RIPQIGDKFASRHGQKG
Sbjct: 932 TRTHTRRDVSTPLKSTESGIVDQVLITTNSEGQKFVKIRVRSTRIPQIGDKFASRHGQKG 991
Query: 67 T 67
T
Sbjct: 992 T 992
>gi|219563991|gb|ACL28179.1| RNA polymerase II second largest subunit, partial [Bisporella
citrina]
Length = 272
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK KRD ST LR++E GIVDQV+LT N +G +F K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 127 TKVHVKRDASTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKG 186
Query: 67 T 67
T
Sbjct: 187 T 187
>gi|103001354|gb|ABF71503.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
chlorophanum]
Length = 687
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK KRD ST LR++E GIVDQV+LT N +G KF K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 526 TKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKG 585
Query: 67 T 67
T
Sbjct: 586 T 586
>gi|449550934|gb|EMD41898.1| hypothetical protein CERSUDRAFT_110450 [Ceriporiopsis subvermispora
B]
Length = 1242
Score = 88.6 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 40/61 (65%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ ++RD ST L+++E+GI+DQV++T N +G KF KIRVRS RIPQ GDKFASRHGQKG
Sbjct: 946 TRAHTRRDVSTPLKSTESGIIDQVLITTNAEGQKFVKIRVRSTRIPQTGDKFASRHGQKG 1005
Query: 67 T 67
T
Sbjct: 1006 T 1006
>gi|357064627|gb|AET52134.1| DNA-dependent RNA polymerase II, partial [Morchella septimelata]
gi|357064637|gb|AET52139.1| DNA-dependent RNA polymerase II, partial [Morchella septimelata]
Length = 280
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 53/64 (82%), Gaps = 1/64 (1%)
Query: 5 GTTKRF-SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
G ++F +KRD ST LR++E GIVDQVMLT N +G KF K+R+R+ +IPQIGDKFASRHG
Sbjct: 131 GQRQKFHTKRDVSTPLRSTENGIVDQVMLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHG 190
Query: 64 QKGT 67
QKGT
Sbjct: 191 QKGT 194
>gi|357064609|gb|AET52125.1| DNA-dependent RNA polymerase II, partial [Morchella punctipes]
Length = 249
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 53/64 (82%), Gaps = 1/64 (1%)
Query: 5 GTTKRF-SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
G ++F +KRD ST LR++E GIVDQVMLT N +G KF K+R+R+ +IPQIGDKFASRHG
Sbjct: 131 GQRQKFHTKRDVSTPLRSTENGIVDQVMLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHG 190
Query: 64 QKGT 67
QKGT
Sbjct: 191 QKGT 194
>gi|6606139|gb|AAF19082.1|AF107810_1 DNA-dependent RNA polymerase II RPB140 [Morchella elata]
Length = 927
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 53/64 (82%), Gaps = 1/64 (1%)
Query: 5 GTTKRF-SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
G ++F +KRD ST LR++E GIVDQVMLT N +G KF K+R+R+ +IPQIGDKFASRHG
Sbjct: 723 GQRQKFHTKRDVSTPLRSTENGIVDQVMLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHG 782
Query: 64 QKGT 67
QKGT
Sbjct: 783 QKGT 786
>gi|384936000|gb|AFI32430.1| RNA polymerase II subunit 2, partial [Morchella sp. Mes-24]
gi|384936002|gb|AFI32431.1| RNA polymerase II subunit 2, partial [Morchella sp. Mes-6]
gi|384936004|gb|AFI32432.1| RNA polymerase II subunit 2, partial [Morchella sp. Mes-X]
gi|384936006|gb|AFI32433.1| RNA polymerase II subunit 2, partial [Morchella sp. Mes-15]
gi|384936008|gb|AFI32434.1| RNA polymerase II subunit 2, partial [Morchella sp. Mes-15]
gi|384936010|gb|AFI32435.1| RNA polymerase II subunit 2, partial [Morchella sp. Mes-16]
gi|384936012|gb|AFI32436.1| RNA polymerase II subunit 2, partial [Morchella sp. Mes-16]
gi|384936014|gb|AFI32437.1| RNA polymerase II subunit 2, partial [Morchella sp. Mes-20]
gi|384936016|gb|AFI32438.1| RNA polymerase II subunit 2, partial [Morchella sp. Mes-20]
gi|384936018|gb|AFI32439.1| RNA polymerase II subunit 2, partial [Morchella sp. Mes-15]
gi|384936020|gb|AFI32440.1| RNA polymerase II subunit 2, partial [Morchella sp. Mes-27]
gi|384936022|gb|AFI32441.1| RNA polymerase II subunit 2, partial [Morchella sp. Mes-27]
gi|384936024|gb|AFI32442.1| RNA polymerase II subunit 2, partial [Morchella sp. Mes-26]
gi|384936026|gb|AFI32443.1| RNA polymerase II subunit 2, partial [Morchella sp. Mes-26]
gi|384936034|gb|AFI32447.1| RNA polymerase II subunit 2, partial [Morchella sp. Mes-6]
gi|384936036|gb|AFI32448.1| RNA polymerase II subunit 2, partial [Morchella sp. Mes-8]
gi|384936038|gb|AFI32449.1| RNA polymerase II subunit 2, partial [Morchella sp. Mes-19]
gi|384936040|gb|AFI32450.1| RNA polymerase II subunit 2, partial [Morchella sp. Mes-19]
gi|384936044|gb|AFI32452.1| RNA polymerase II subunit 2, partial [Morchella sp. Mes-16]
gi|384936046|gb|AFI32453.1| RNA polymerase II subunit 2, partial [Morchella sp. Mes-9]
gi|384936048|gb|AFI32454.1| RNA polymerase II subunit 2, partial [Morchella sp. Mes-9]
gi|384936050|gb|AFI32455.1| RNA polymerase II subunit 2, partial [Morchella sp. Mes-9]
gi|384936052|gb|AFI32456.1| RNA polymerase II subunit 2, partial [Morchella sp. Mes-9]
gi|384936054|gb|AFI32457.1| RNA polymerase II subunit 2, partial [Morchella sp. Mes-9]
gi|384936058|gb|AFI32459.1| RNA polymerase II subunit 2, partial [Morchella sp. Mes-6]
gi|384936060|gb|AFI32460.1| RNA polymerase II subunit 2, partial [Morchella sp. Mes-6]
gi|384936062|gb|AFI32461.1| RNA polymerase II subunit 2, partial [Morchella sp. Mes-8]
gi|384936064|gb|AFI32462.1| RNA polymerase II subunit 2, partial [Morchella sp. Mes-8]
gi|384936066|gb|AFI32463.1| RNA polymerase II subunit 2, partial [Morchella sp. Mes-25]
gi|384936068|gb|AFI32464.1| RNA polymerase II subunit 2, partial [Morchella sp. Mes-25]
gi|384936070|gb|AFI32465.1| RNA polymerase II subunit 2, partial [Morchella sp. Mes-19]
gi|384936072|gb|AFI32466.1| RNA polymerase II subunit 2, partial [Morchella sp. Mes-21]
gi|384936074|gb|AFI32467.1| RNA polymerase II subunit 2, partial [Morchella sp. Mes-13]
gi|384936076|gb|AFI32468.1| RNA polymerase II subunit 2, partial [Morchella sp. Mes-21]
gi|384936078|gb|AFI32469.1| RNA polymerase II subunit 2, partial [Morchella sp. Mes-6]
Length = 243
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/60 (68%), Positives = 50/60 (83%)
Query: 8 KRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
K +KRD ST LR++E GIVDQVMLT N +G KF K+R+R+ ++PQIGDKFASRHGQKGT
Sbjct: 112 KYHTKRDVSTPLRSTENGIVDQVMLTTNAEGLKFVKVRMRTTKVPQIGDKFASRHGQKGT 171
>gi|298103856|dbj|BAJ09364.1| RNA polymerase II second largest subunit [Lachnum sp. FC-2355]
Length = 579
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 39/61 (63%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E GIVDQV++T N +G +F K+R+R+ ++PQIGDKFASRHGQKG
Sbjct: 517 TKAHTKRDASTPLRSTENGIVDQVLITTNAEGLRFVKVRMRTTKVPQIGDKFASRHGQKG 576
Query: 67 T 67
T
Sbjct: 577 T 577
>gi|103001284|gb|ABF71500.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
cf. chlorophanum Feuerer 18.2.2003]
Length = 699
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK KRD ST LR++E GIVDQV+LT N +G KF K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 529 TKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKG 588
Query: 67 T 67
T
Sbjct: 589 T 589
>gi|103001826|gb|ABF71523.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
chlorophanum]
Length = 688
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK KRD ST LR++E GIVDQV+LT N +G KF K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 535 TKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKG 594
Query: 67 T 67
T
Sbjct: 595 T 595
>gi|103001854|gb|ABF71524.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
discurrens]
Length = 702
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK KRD ST LR++E GIVDQV+LT N +G KF K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 531 TKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKG 590
Query: 67 T 67
T
Sbjct: 591 T 591
>gi|396941837|gb|AFN89636.1| RNA polymerase II, partial [Eremothecium cymbalariae]
Length = 776
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/57 (70%), Positives = 49/57 (85%)
Query: 11 SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
SKRD ST LR++E GIVDQV++T N +G KF K+RVR+ ++PQIGDKFASRHGQKGT
Sbjct: 626 SKRDASTPLRSTENGIVDQVLITTNQEGLKFVKVRVRTTKVPQIGDKFASRHGQKGT 682
>gi|396941833|gb|AFN89634.1| RNA polymerase II, partial [Lachancea thermotolerans]
Length = 773
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/57 (70%), Positives = 49/57 (85%)
Query: 11 SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
SKRD ST LR++E GIVDQV++T N +G KF K+RVR+ ++PQIGDKFASRHGQKGT
Sbjct: 623 SKRDASTPLRSTENGIVDQVLITTNQEGLKFVKVRVRTTKVPQIGDKFASRHGQKGT 679
>gi|300394756|gb|ADK11916.1| DNA-directed RNA polymerase II subunit two, partial [Serpula
himantioides]
Length = 682
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ ++RD ST L+++E GIVDQV++T N +G KF KIRVRS RIPQIGDKFASRHGQKG
Sbjct: 524 TRTHTRRDVSTPLKSTENGIVDQVLITTNSEGQKFVKIRVRSTRIPQIGDKFASRHGQKG 583
Query: 67 T 67
T
Sbjct: 584 T 584
>gi|296412297|ref|XP_002835861.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295629657|emb|CAZ80018.1| unnamed protein product [Tuber melanosporum]
Length = 436
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/60 (70%), Positives = 50/60 (83%)
Query: 8 KRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
K +KRD ST LR++E GIVDQVMLT N +G KF K+R+R+ +IPQIGDKFASRHGQKGT
Sbjct: 139 KYHTKRDVSTPLRSTENGIVDQVMLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKGT 198
>gi|300394750|gb|ADK11913.1| DNA-directed RNA polymerase II subunit two, partial [Serpula
himantioides]
Length = 685
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ ++RD ST L+++E GIVDQV++T N +G KF KIRVRS RIPQIGDKFASRHGQKG
Sbjct: 524 TRTHTRRDVSTPLKSTENGIVDQVLITTNSEGQKFVKIRVRSTRIPQIGDKFASRHGQKG 583
Query: 67 T 67
T
Sbjct: 584 T 584
>gi|103001406|gb|ABF71506.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
chlorophanum]
Length = 707
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK KRD ST LR++E GIVDQV+LT N +G KF K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 537 TKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKG 596
Query: 67 T 67
T
Sbjct: 597 T 597
>gi|120561257|gb|ABM27013.1| RNA polymerase II second largest subunit, partial [Gigaspora
gigantea]
Length = 894
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/57 (70%), Positives = 48/57 (84%)
Query: 11 SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
+ RD ST +R++E GIVDQVM+T N +G KF K+RVRS RIPQ+GDKFASRHGQKGT
Sbjct: 729 THRDASTPMRSTENGIVDQVMVTTNAEGMKFVKVRVRSTRIPQMGDKFASRHGQKGT 785
>gi|55140709|gb|AAQ01541.2| RNA polymerase II second largest subunit [Crepidotus cf. applanatus
PBM 717]
Length = 688
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ ++RD ST L+++E+GIVDQV++T N +G KF K+RVRS RIPQIGDKFASRHGQKG
Sbjct: 520 TRTHTRRDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKG 579
Query: 67 T 67
T
Sbjct: 580 T 580
>gi|384492104|gb|AFH96457.1| RNA polymerase II subunit 2, partial [Morchella populiphila]
Length = 295
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 53/64 (82%), Gaps = 1/64 (1%)
Query: 5 GTTKRF-SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
G ++F +KRD ST LR++E GIVDQVMLT N +G KF K+R+R+ +IPQIGDKFASRHG
Sbjct: 137 GQRQKFHTKRDVSTPLRSTENGIVDQVMLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHG 196
Query: 64 QKGT 67
QKGT
Sbjct: 197 QKGT 200
>gi|103001369|gb|ABF71504.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
chlorophanum]
Length = 699
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK KRD ST LR++E GIVDQV+LT N +G KF K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 538 TKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKG 597
Query: 67 T 67
T
Sbjct: 598 T 598
>gi|110669594|gb|ABG81892.1| RNA polymerase II second largest subunit [Mycoblastus sanguinarius]
Length = 709
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK KRD ST LR++E GIVDQV+L+ N DG +F K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 535 TKLHVKRDASTPLRSTENGIVDQVLLSTNSDGLRFVKVRMRTTKIPQIGDKFASRHGQKG 594
Query: 67 T 67
T
Sbjct: 595 T 595
>gi|396941961|gb|AFN89697.1| RNA polymerase II, partial [Candida caseinolytica]
Length = 775
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E+G+VDQV+LT N +G KF K+R+R+ ++PQIGDKFASRHGQKG
Sbjct: 621 TKFHTKRDASTPLRSTESGLVDQVLLTTNQEGLKFVKVRMRTTKVPQIGDKFASRHGQKG 680
Query: 67 T 67
T
Sbjct: 681 T 681
>gi|396941843|gb|AFN89639.1| RNA polymerase II, partial [Candida abiesophila]
Length = 785
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 49/61 (80%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR +E G VDQV+LT N +G KF K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 631 TKYHTKRDASTPLRTTENGXVDQVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKG 690
Query: 67 T 67
T
Sbjct: 691 T 691
>gi|103001903|gb|ABF71526.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
flavum]
Length = 699
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK KRD ST LR++E GIVDQV+LT N +G KF K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 530 TKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKG 589
Query: 67 T 67
T
Sbjct: 590 T 590
>gi|103001310|gb|ABF71501.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
chlorophanum]
Length = 683
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK KRD ST LR++E GIVDQV+LT N +G KF K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 522 TKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKG 581
Query: 67 T 67
T
Sbjct: 582 T 582
>gi|103001385|gb|ABF71505.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
chlorophanum]
Length = 709
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK KRD ST LR++E GIVDQV+LT N +G KF K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 539 TKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKG 598
Query: 67 T 67
T
Sbjct: 599 T 599
>gi|103001877|gb|ABF71525.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
flavum]
Length = 714
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK KRD ST LR++E GIVDQV+LT N +G KF K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 538 TKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKG 597
Query: 67 T 67
T
Sbjct: 598 T 598
>gi|55273989|gb|AAV48865.1| RNA polymerase II second largest subunit [Amanita brunnescens]
Length = 694
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ ++RD ST L+++E+GIVDQV++T N +G KF K+RVRS RIPQIGDKFASRHGQKG
Sbjct: 505 TRTHTRRDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKG 564
Query: 67 T 67
T
Sbjct: 565 T 565
>gi|46411490|gb|AAS94316.1| RNA polymerase II [Acarosporina microspora]
Length = 717
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E GIVD+V+LT N +G KF K+R R+ +IPQIGDKFASRHGQKG
Sbjct: 543 TKLHTKRDASTPLRSTENGIVDKVLLTTNAEGLKFVKVRTRTTKIPQIGDKFASRHGQKG 602
Query: 67 T 67
T
Sbjct: 603 T 603
>gi|119644296|gb|ABL85617.1| RNA polymerase II second largest subunit [uncultured Ascomycota]
Length = 326
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK KRD ST LR++E GI+DQV+LT NV+G KF K+R R+ ++PQIGDKFASRHGQKG
Sbjct: 152 TKLHVKRDVSTPLRSTENGIIDQVLLTTNVEGLKFVKVRTRTTKVPQIGDKFASRHGQKG 211
Query: 67 T 67
T
Sbjct: 212 T 212
>gi|103001965|gb|ABF71529.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
cf. chlorophanum Nash 26]
Length = 714
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK KRD ST LR++E GIVDQV+LT N +G KF K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 538 TKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKG 597
Query: 67 T 67
T
Sbjct: 598 T 598
>gi|292661253|gb|ADE35242.1| RNA polymerase II [Morchella sp. Mel-23]
Length = 295
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 53/64 (82%), Gaps = 1/64 (1%)
Query: 5 GTTKRF-SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
G ++F +KRD ST LR++E GIVDQVMLT N +G KF K+R+R+ +IPQIGDKFASRHG
Sbjct: 135 GQRQKFHTKRDVSTPLRSTENGIVDQVMLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHG 194
Query: 64 QKGT 67
QKGT
Sbjct: 195 QKGT 198
>gi|94410902|gb|ABF18572.1| RNA polymerase II second largest subunit, partial [Agrocybe erebia]
Length = 641
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ ++RD ST L+++E+GIVDQV++T N +G KF K+RVRS RIPQIGDKFASRHGQKG
Sbjct: 524 TRTHTRRDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKG 583
Query: 67 T 67
T
Sbjct: 584 T 584
>gi|312204336|gb|ADQ47485.1| RNA polymerase II second largest subunit [Gyalidea praetermissa]
Length = 247
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK ++RD ST LR++E GIVD+VMLT N +G KF K+R+R+ ++PQIGDKFASRHGQKG
Sbjct: 122 TKIHTRRDASTPLRSTENGIVDKVMLTTNAEGLKFVKVRMRTTKVPQIGDKFASRHGQKG 181
Query: 67 T 67
T
Sbjct: 182 T 182
>gi|293601712|gb|ADE48260.1| RNA polymerase II [Morchella punctipes]
Length = 294
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 53/64 (82%), Gaps = 1/64 (1%)
Query: 5 GTTKRF-SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
G ++F +KRD ST LR++E GIVDQVMLT N +G KF K+R+R+ +IPQIGDKFASRHG
Sbjct: 137 GQRQKFHTKRDVSTPLRSTENGIVDQVMLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHG 196
Query: 64 QKGT 67
QKGT
Sbjct: 197 QKGT 200
>gi|293601700|gb|ADE48254.1| RNA polymerase II [Morchella populiphila]
gi|293601722|gb|ADE48265.1| RNA polymerase II [Morchella populiphila]
Length = 297
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 53/64 (82%), Gaps = 1/64 (1%)
Query: 5 GTTKRF-SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
G ++F +KRD ST LR++E GIVDQVMLT N +G KF K+R+R+ +IPQIGDKFASRHG
Sbjct: 137 GQRQKFHTKRDVSTPLRSTENGIVDQVMLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHG 196
Query: 64 QKGT 67
QKGT
Sbjct: 197 QKGT 200
>gi|292606625|gb|ADE34129.1| RNA polymerase II second largest subunit [Dothideomycetes sp. TRN
267]
Length = 289
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK KRD ST LR++E GIVDQV+LT NV+G KF K+R R+ ++PQIGDKFASRHGQKG
Sbjct: 137 TKLHVKRDVSTPLRSTENGIVDQVLLTTNVEGLKFVKVRTRTTKVPQIGDKFASRHGQKG 196
Query: 67 T 67
T
Sbjct: 197 T 197
>gi|194320153|gb|ACF48300.1| DNA-dependent RNA polymerase II second largest subunit [Catolechia
wahlenbergii]
Length = 317
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK KRD ST LR++E GIVDQV+LT N DG +F K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 150 TKLHIKRDVSTPLRSTENGIVDQVLLTTNADGLRFVKVRMRTTKIPQIGDKFASRHGQKG 209
Query: 67 T 67
T
Sbjct: 210 T 210
>gi|103001731|gb|ABF71519.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
flavum]
Length = 700
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK KRD ST LR++E GIVDQV+LT N +G KF K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 530 TKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKG 589
Query: 67 T 67
T
Sbjct: 590 T 590
>gi|103001677|gb|ABF71517.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
chlorophanum]
Length = 704
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK KRD ST LR++E GIVDQV+LT N +G KF K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 538 TKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKG 597
Query: 67 T 67
T
Sbjct: 598 T 598
>gi|110669602|gb|ABG81896.1| RNA polymerase II second largest subunit [Lecanora hybocarpa]
Length = 703
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E GIVDQV+++ N DG +F K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 529 TKAHTKRDVSTPLRSTENGIVDQVLMSTNADGLRFVKVRMRTTKIPQIGDKFASRHGQKG 588
Query: 67 T 67
T
Sbjct: 589 T 589
>gi|292661243|gb|ADE35237.1| RNA polymerase II [Morchella sp. Mel-20]
gi|292661251|gb|ADE35241.1| RNA polymerase II [Morchella sp. Mel-20]
gi|292661257|gb|ADE35244.1| RNA polymerase II [Morchella sp. Mel-16]
gi|292661261|gb|ADE35246.1| RNA polymerase II [Morchella sp. Mel-17]
gi|293601678|gb|ADE48243.1| RNA polymerase II [Morchella punctipes]
gi|293601682|gb|ADE48245.1| RNA polymerase II [Morchella punctipes]
gi|293601692|gb|ADE48250.1| RNA polymerase II [Morchella semilibera]
gi|293601696|gb|ADE48252.1| RNA polymerase II [Morchella sextelata]
gi|293601698|gb|ADE48253.1| RNA polymerase II [Morchella frustrata]
gi|293601702|gb|ADE48255.1| RNA polymerase II [Morchella frustrata]
gi|293601718|gb|ADE48263.1| RNA polymerase II [Morchella frustrata]
gi|293601726|gb|ADE48267.1| RNA polymerase II [Morchella sextelata]
gi|293601732|gb|ADE48270.1| RNA polymerase II [Morchella sextelata]
gi|293601734|gb|ADE48271.1| RNA polymerase II [Morchella importuna]
gi|293601738|gb|ADE48273.1| RNA polymerase II [Morchella punctipes]
gi|293601740|gb|ADE48274.1| RNA polymerase II [Morchella punctipes]
gi|293601744|gb|ADE48276.1| RNA polymerase II [Morchella septimelata]
gi|293601748|gb|ADE48278.1| RNA polymerase II [Morchella sextelata]
gi|293601750|gb|ADE48279.1| RNA polymerase II [Morchella sp. Mel-20]
gi|293601752|gb|ADE48280.1| RNA polymerase II [Morchella sp. Mel-13]
gi|293601754|gb|ADE48281.1| RNA polymerase II [Morchella septimelata]
Length = 297
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 53/64 (82%), Gaps = 1/64 (1%)
Query: 5 GTTKRF-SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
G ++F +KRD ST LR++E GIVDQVMLT N +G KF K+R+R+ +IPQIGDKFASRHG
Sbjct: 137 GQRQKFHTKRDVSTPLRSTENGIVDQVMLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHG 196
Query: 64 QKGT 67
QKGT
Sbjct: 197 QKGT 200
>gi|94410936|gb|ABF18586.1| RNA polymerase II second largest subunit, partial [Camarophyllopsis
hymenocephala]
Length = 696
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ ++RD ST L+++E+GIVDQV++T N +G KF K+RVRS RIPQIGDKFASRHGQKG
Sbjct: 526 TRTHTRRDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKG 585
Query: 67 T 67
T
Sbjct: 586 T 586
>gi|320172584|gb|ADW24175.1| RNA polymerase II second largest subunit [Gloeophyllum protractum]
Length = 350
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ ++RD ST L+++E+GIVDQV++T N +G KF K+RVRS RIPQIGDKFASRHGQKG
Sbjct: 192 TRLHTRRDVSTALKSTESGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKG 251
Query: 67 T 67
T
Sbjct: 252 T 252
>gi|293601766|gb|ADE48287.1| RNA polymerase II [Morchella sp. Mes-16]
gi|293601780|gb|ADE48294.1| RNA polymerase II [Morchella sp. Mes-16]
gi|293601826|gb|ADE48317.1| RNA polymerase II [Morchella cryptica]
gi|293601866|gb|ADE48195.1| RNA polymerase II, partial [Morchella sp. Mes-14]
gi|293601868|gb|ADE48196.1| RNA polymerase II, partial [Morchella sp. Mes-16]
gi|293601870|gb|ADE48197.1| RNA polymerase II, partial [Morchella cryptica]
gi|293601872|gb|ADE48198.1| RNA polymerase II, partial [Morchella prava]
gi|293601878|gb|ADE48201.1| RNA polymerase II, partial [Morchella sp. Mes-9]
gi|293601880|gb|ADE48202.1| RNA polymerase II, partial [Morchella sp. Mes-8]
gi|293601882|gb|ADE48203.1| RNA polymerase II, partial [Morchella sp. Mes-5]
gi|293601884|gb|ADE48204.1| RNA polymerase II, partial [Morchella sp. Mes-6]
gi|293601888|gb|ADE48206.1| RNA polymerase II, partial [Morchella sp. Mes-13]
gi|293601890|gb|ADE48207.1| RNA polymerase II, partial [Morchella sp. Mes-15]
gi|357065243|gb|AET52412.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mes-17]
gi|357065245|gb|AET52413.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mes-17]
gi|357065247|gb|AET52414.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mes-8]
gi|357065255|gb|AET52418.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mes-8]
gi|357065257|gb|AET52419.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mes-16]
gi|357065259|gb|AET52420.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mes-16]
gi|357065261|gb|AET52421.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mes-17]
gi|357065263|gb|AET52422.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mes-18]
gi|357065265|gb|AET52423.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mes-8]
gi|357065267|gb|AET52424.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mes-8]
gi|357065269|gb|AET52425.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mes-8]
gi|357065271|gb|AET52426.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mes-8]
gi|357065273|gb|AET52427.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mes-17]
gi|357065275|gb|AET52428.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mes-17]
gi|357065277|gb|AET52429.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mes-17]
gi|357065287|gb|AET52434.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mes-16]
gi|357065295|gb|AET52438.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mes-14]
gi|357065303|gb|AET52442.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mes-16]
gi|408691377|gb|AFU82028.1| RNA polymerase II, partial [Morchella prava]
gi|408691379|gb|AFU82029.1| RNA polymerase II, partial [Morchella prava]
gi|408691437|gb|AFU82058.1| RNA polymerase II, partial [Morchella prava]
gi|408691439|gb|AFU82059.1| RNA polymerase II, partial [Morchella prava]
Length = 290
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/60 (68%), Positives = 50/60 (83%)
Query: 8 KRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
K +KRD ST LR++E GIVDQVMLT N +G KF K+R+R+ ++PQIGDKFASRHGQKGT
Sbjct: 135 KYHTKRDVSTPLRSTENGIVDQVMLTTNAEGLKFVKVRMRTTKVPQIGDKFASRHGQKGT 194
>gi|103001649|gb|ABF71516.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
chlorophanum]
Length = 691
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK KRD ST LR++E GIVDQV+LT N +G KF K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 530 TKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKG 589
Query: 67 T 67
T
Sbjct: 590 T 590
>gi|46277366|gb|AAS86873.1| DNA-dependent RNA polymerase II [Peziza howsei]
Length = 562
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E GIVDQVM+T N +G KF K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 401 TKYHTKRDVSTPLRSTENGIVDQVMVTTNQEGLKFVKVRMRTTKIPQIGDKFASRHGQKG 460
Query: 67 T 67
T
Sbjct: 461 T 461
>gi|396941924|gb|AFN89679.1| RNA polymerase II, partial [Candida santjacobensis]
Length = 777
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E GIVDQV+LT N +G +F K+R+R+ ++PQIGDKFASRHGQKG
Sbjct: 623 TKYHTKRDASTPLRSTENGIVDQVLLTTNQEGLRFVKVRMRTTKVPQIGDKFASRHGQKG 682
Query: 67 T 67
T
Sbjct: 683 T 683
>gi|309753162|gb|ADO85604.1| DNA-dependent RNA polymerase II, partial [Morchella elata]
gi|309753164|gb|ADO85605.1| DNA-dependent RNA polymerase II, partial [Morchella elata]
Length = 312
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 53/64 (82%), Gaps = 1/64 (1%)
Query: 5 GTTKRF-SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
G ++F +KRD ST LR++E GIVDQVMLT N +G KF K+R+R+ +IPQIGDKFASRHG
Sbjct: 142 GQRQKFHTKRDVSTPLRSTENGIVDQVMLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHG 201
Query: 64 QKGT 67
QKGT
Sbjct: 202 QKGT 205
>gi|55273985|gb|AAV48863.1| RNA polymerase II second largest subunit [Coprinus comatus]
Length = 699
Score = 88.6 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 40/61 (65%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ ++RD ST L+++E+GIVDQV++T N +G KF K+RVR+ RIPQIGDKFASRHGQKG
Sbjct: 509 TRTHTRRDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRATRIPQIGDKFASRHGQKG 568
Query: 67 T 67
T
Sbjct: 569 T 569
>gi|451350731|gb|AGF39122.1| RNA polymerase II second largest subunit, partial [Echinoplaca
epiphylla]
Length = 284
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E+GIVD+V+LT N D KF KIR R+ ++PQIGDKFASRHGQKG
Sbjct: 128 TKMHTKRDASTPLRSTESGIVDKVLLTTNSDALKFVKIRTRTTKVPQIGDKFASRHGQKG 187
Query: 67 T 67
T
Sbjct: 188 T 188
>gi|384492096|gb|AFH96453.1| RNA polymerase II subunit 2, partial [Morchella frustrata]
Length = 322
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 53/64 (82%), Gaps = 1/64 (1%)
Query: 5 GTTKRF-SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
G ++F +KRD ST LR++E GIVDQVMLT N +G KF K+R+R+ +IPQIGDKFASRHG
Sbjct: 149 GQRQKFHTKRDVSTPLRSTENGIVDQVMLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHG 208
Query: 64 QKGT 67
QKGT
Sbjct: 209 QKGT 212
>gi|384492090|gb|AFH96450.1| RNA polymerase II subunit 2, partial [Morchella septimelata]
Length = 323
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 53/64 (82%), Gaps = 1/64 (1%)
Query: 5 GTTKRF-SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
G ++F +KRD ST LR++E GIVDQVMLT N +G KF K+R+R+ +IPQIGDKFASRHG
Sbjct: 149 GQRQKFHTKRDVSTPLRSTENGIVDQVMLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHG 208
Query: 64 QKGT 67
QKGT
Sbjct: 209 QKGT 212
>gi|293601706|gb|ADE48257.1| RNA polymerase II [Morchella semilibera]
Length = 293
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 53/64 (82%), Gaps = 1/64 (1%)
Query: 5 GTTKRF-SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
G ++F +KRD ST LR++E GIVDQVMLT N +G KF K+R+R+ +IPQIGDKFASRHG
Sbjct: 134 GQRQKFHTKRDVSTPLRSTENGIVDQVMLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHG 193
Query: 64 QKGT 67
QKGT
Sbjct: 194 QKGT 197
>gi|145307898|gb|ABP57253.1| RNA polymerase II second largest subunit, partial [Batkoa major]
Length = 299
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/57 (71%), Positives = 51/57 (89%)
Query: 11 SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
+K+D ST L+++ETGIVD+VMLT+N +G +F K+RVRS RIPQIGDKFASRHGQKGT
Sbjct: 146 TKKDVSTPLKSTETGIVDRVMLTINQEGMRFAKVRVRSTRIPQIGDKFASRHGQKGT 202
>gi|406857868|gb|AFS64679.1| RNA polymerase II second largest subunit, partial [Stegobolus
radians]
Length = 305
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E+GIVD+V+LT N +G KF K+R+R+ ++PQIGDKFASRHGQKG
Sbjct: 144 TKLHTKRDASTPLRSTESGIVDKVLLTTNQEGLKFVKVRMRTTKVPQIGDKFASRHGQKG 203
Query: 67 T 67
T
Sbjct: 204 T 204
>gi|292661195|gb|ADE35213.1| RNA polymerase II [Morchella sp. Mel-19]
gi|292661197|gb|ADE35214.1| RNA polymerase II [Morchella sp. Mel-19]
gi|292661199|gb|ADE35215.1| RNA polymerase II [Morchella sp. Mel-19]
gi|292661201|gb|ADE35216.1| RNA polymerase II [Morchella sp. Mel-20]
gi|292661203|gb|ADE35217.1| RNA polymerase II [Morchella sp. Mel-19]
gi|292661205|gb|ADE35218.1| RNA polymerase II [Morchella sp. Mel-19]
gi|292661233|gb|ADE35232.1| RNA polymerase II [Morchella sp. Mel-20]
gi|292661235|gb|ADE35233.1| RNA polymerase II [Morchella sp. Mel-19]
gi|292661249|gb|ADE35240.1| RNA polymerase II [Morchella sp. Mel-20]
gi|292661271|gb|ADE35251.1| RNA polymerase II [Morchella sp. Mel-20]
gi|292661283|gb|ADE35257.1| RNA polymerase II [Morchella sp. Mel-19]
gi|292661287|gb|ADE35259.1| RNA polymerase II [Morchella sp. Mel-19]
gi|292661289|gb|ADE35260.1| RNA polymerase II [Morchella sp. Mel-20]
gi|292661291|gb|ADE35261.1| RNA polymerase II [Morchella sp. Mel-20]
Length = 298
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 53/64 (82%), Gaps = 1/64 (1%)
Query: 5 GTTKRF-SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
G ++F +KRD ST LR++E GIVDQVMLT N +G KF K+R+R+ +IPQIGDKFASRHG
Sbjct: 137 GQRQKFHTKRDVSTPLRSTENGIVDQVMLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHG 196
Query: 64 QKGT 67
QKGT
Sbjct: 197 QKGT 200
>gi|103001947|gb|ABF71528.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
cf. chlorophanum Riefner 87-426]
Length = 673
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK KRD ST LR++E GIVDQV+LT N +G KF K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 497 TKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKG 556
Query: 67 T 67
T
Sbjct: 557 T 557
>gi|384935654|gb|AFI32317.1| RNA polymerase II subunit 2, partial [Morchella importuna]
Length = 284
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 53/64 (82%), Gaps = 1/64 (1%)
Query: 5 GTTKRF-SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
G ++F +KRD ST LR++E GIVDQVMLT N +G KF K+R+R+ +IPQIGDKFASRHG
Sbjct: 127 GQRQKFHTKRDVSTPLRSTENGIVDQVMLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHG 186
Query: 64 QKGT 67
QKGT
Sbjct: 187 QKGT 190
>gi|384492100|gb|AFH96455.1| RNA polymerase II subunit 2, partial [Morchella prava]
Length = 322
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/60 (68%), Positives = 50/60 (83%)
Query: 8 KRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
K +KRD ST LR++E GIVDQVMLT N +G KF K+R+R+ ++PQIGDKFASRHGQKGT
Sbjct: 153 KYHTKRDVSTPLRSTENGIVDQVMLTTNAEGLKFVKVRMRTTKVPQIGDKFASRHGQKGT 212
>gi|293601894|gb|ADE48209.1| RNA polymerase II, partial [Morchella importuna]
gi|293601898|gb|ADE48211.1| RNA polymerase II, partial [Morchella sextelata]
gi|293601900|gb|ADE48212.1| RNA polymerase II, partial [Morchella frustrata]
gi|293601902|gb|ADE48213.1| RNA polymerase II, partial [Morchella sp. Mel-8]
gi|293601904|gb|ADE48214.1| RNA polymerase II, partial [Morchella populiphila]
gi|293601906|gb|ADE48215.1| RNA polymerase II, partial [Morchella punctipes]
gi|293601908|gb|ADE48216.1| RNA polymerase II, partial [Morchella septimelata]
gi|293601910|gb|ADE48217.1| RNA polymerase II, partial [Morchella semilibera]
gi|293601912|gb|ADE48218.1| RNA polymerase II, partial [Morchella tomentosa]
gi|293601914|gb|ADE48219.1| RNA polymerase II, partial [Morchella sp. Mel-18]
gi|293601916|gb|ADE48220.1| RNA polymerase II, partial [Morchella sp. Mel-13]
gi|293601918|gb|ADE48221.1| RNA polymerase II, partial [Morchella septentrionalis]
gi|293601920|gb|ADE48222.1| RNA polymerase II, partial [Morchella sp. Mel-16]
gi|293601922|gb|ADE48223.1| RNA polymerase II, partial [Morchella sp. Mel-20]
gi|293601924|gb|ADE48224.1| RNA polymerase II, partial [Morchella sp. Mel-21]
gi|293601926|gb|ADE48225.1| RNA polymerase II, partial [Morchella angusticeps]
gi|293601928|gb|ADE48226.1| RNA polymerase II, partial [Morchella sp. Mel-17]
gi|293601930|gb|ADE48227.1| RNA polymerase II, partial [Morchella sp. Mel-23]
gi|293601932|gb|ADE48228.1| RNA polymerase II, partial [Morchella brunnea]
gi|293601934|gb|ADE48229.1| RNA polymerase II, partial [Morchella snyderi]
gi|293601936|gb|ADE48230.1| RNA polymerase II, partial [Morchella sp. Mel-14]
gi|293601938|gb|ADE48231.1| RNA polymerase II, partial [Morchella sp. Mel-19]
gi|293601944|gb|ADE48234.1| RNA polymerase II, partial [Verpa cf. conica M22]
gi|293601948|gb|ADE48236.1| RNA polymerase II, partial [Verpa cf. conica M503]
gi|293601950|gb|ADE48237.1| RNA polymerase II, partial [Verpa sp. M90]
gi|293601952|gb|ADE48238.1| RNA polymerase II, partial [Verpa bohemica]
gi|293601954|gb|ADE48239.1| RNA polymerase II, partial [Verpa sp. M499]
gi|293601956|gb|ADE48240.1| RNA polymerase II, partial [Disciotis venosa]
gi|293601958|gb|ADE48241.1| RNA polymerase II, partial [Disciotis sp. M95]
gi|357064547|gb|AET52094.1| DNA-dependent RNA polymerase II, partial [Morchella populiphila]
gi|357064549|gb|AET52095.1| DNA-dependent RNA polymerase II, partial [Morchella populiphila]
gi|357064551|gb|AET52096.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mel-3]
gi|357064553|gb|AET52097.1| DNA-dependent RNA polymerase II, partial [Morchella importuna]
gi|357064555|gb|AET52098.1| DNA-dependent RNA polymerase II, partial [Morchella septimelata]
gi|357064557|gb|AET52099.1| DNA-dependent RNA polymerase II, partial [Morchella septimelata]
gi|357064559|gb|AET52100.1| DNA-dependent RNA polymerase II, partial [Morchella septimelata]
gi|357064561|gb|AET52101.1| DNA-dependent RNA polymerase II, partial [Morchella septimelata]
gi|357064563|gb|AET52102.1| DNA-dependent RNA polymerase II, partial [Morchella populiphila]
gi|357064565|gb|AET52103.1| DNA-dependent RNA polymerase II, partial [Morchella septimelata]
gi|357064567|gb|AET52104.1| DNA-dependent RNA polymerase II, partial [Morchella septimelata]
gi|357064571|gb|AET52106.1| DNA-dependent RNA polymerase II, partial [Morchella populiphila]
gi|357064573|gb|AET52107.1| DNA-dependent RNA polymerase II, partial [Morchella populiphila]
gi|357064575|gb|AET52108.1| DNA-dependent RNA polymerase II, partial [Morchella importuna]
gi|357064577|gb|AET52109.1| DNA-dependent RNA polymerase II, partial [Morchella frustrata]
gi|357064579|gb|AET52110.1| DNA-dependent RNA polymerase II, partial [Morchella frustrata]
gi|357064581|gb|AET52111.1| DNA-dependent RNA polymerase II, partial [Morchella frustrata]
gi|357064583|gb|AET52112.1| DNA-dependent RNA polymerase II, partial [Morchella frustrata]
gi|357064585|gb|AET52113.1| DNA-dependent RNA polymerase II, partial [Morchella frustrata]
gi|357064587|gb|AET52114.1| DNA-dependent RNA polymerase II, partial [Morchella frustrata]
gi|357064589|gb|AET52115.1| DNA-dependent RNA polymerase II, partial [Morchella frustrata]
gi|357064591|gb|AET52116.1| DNA-dependent RNA polymerase II, partial [Morchella frustrata]
gi|357064593|gb|AET52117.1| DNA-dependent RNA polymerase II, partial [Morchella frustrata]
gi|357064595|gb|AET52118.1| DNA-dependent RNA polymerase II, partial [Morchella importuna]
gi|357064597|gb|AET52119.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mel-3]
gi|357064599|gb|AET52120.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mel-3]
gi|357064601|gb|AET52121.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mel-3]
gi|357064603|gb|AET52122.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mel-3]
gi|357064605|gb|AET52123.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mel-3]
gi|357064633|gb|AET52137.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mel-3]
gi|357064937|gb|AET52259.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mel-16]
gi|357064939|gb|AET52260.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mel-26]
gi|357064941|gb|AET52261.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mel-20]
gi|357064943|gb|AET52262.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mel-31]
gi|357064945|gb|AET52263.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mel-31]
gi|357064947|gb|AET52264.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mel-28]
gi|357064949|gb|AET52265.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mel-13]
gi|357064951|gb|AET52266.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mel-32]
gi|357064955|gb|AET52268.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mel-27]
gi|357064959|gb|AET52270.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mel-20]
gi|357064961|gb|AET52271.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mel-19]
gi|357064963|gb|AET52272.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mel-29]
gi|357064965|gb|AET52273.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mel-29]
gi|357064967|gb|AET52274.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mel-31]
gi|357064969|gb|AET52275.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mel-32]
gi|357064971|gb|AET52276.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mel-27]
gi|357064973|gb|AET52277.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mel-32]
gi|357064979|gb|AET52280.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mel-28]
gi|357064981|gb|AET52281.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mel-26]
gi|357064983|gb|AET52282.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mel-26]
gi|357064985|gb|AET52283.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mel-28]
gi|357064987|gb|AET52284.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mel-27]
gi|357064989|gb|AET52285.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mel-27]
gi|357064995|gb|AET52288.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mel-16]
gi|357064997|gb|AET52289.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mel-19]
gi|357064999|gb|AET52290.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mel-32]
gi|357065001|gb|AET52291.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mel-30]
gi|357065003|gb|AET52292.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mel-20]
gi|408691369|gb|AFU82024.1| RNA polymerase II, partial [Morchella septentrionalis]
gi|408691371|gb|AFU82025.1| RNA polymerase II, partial [Morchella septentrionalis]
gi|408691373|gb|AFU82026.1| RNA polymerase II, partial [Morchella septentrionalis]
gi|408691375|gb|AFU82027.1| RNA polymerase II, partial [Morchella angusticeps]
gi|408691385|gb|AFU82032.1| RNA polymerase II, partial [Morchella angusticeps]
gi|408691387|gb|AFU82033.1| RNA polymerase II, partial [Morchella angusticeps]
gi|408691395|gb|AFU82037.1| RNA polymerase II, partial [Morchella angusticeps]
gi|408691407|gb|AFU82043.1| RNA polymerase II, partial [Morchella septentrionalis]
gi|408691411|gb|AFU82045.1| RNA polymerase II, partial [Morchella angusticeps]
gi|408691413|gb|AFU82046.1| RNA polymerase II, partial [Morchella snyderi]
gi|408691415|gb|AFU82047.1| RNA polymerase II, partial [Morchella septentrionalis]
gi|408691417|gb|AFU82048.1| RNA polymerase II, partial [Morchella capitata]
gi|408691419|gb|AFU82049.1| RNA polymerase II, partial [Morchella capitata]
gi|408691421|gb|AFU82050.1| RNA polymerase II, partial [Morchella capitata]
gi|408691423|gb|AFU82051.1| RNA polymerase II, partial [Morchella capitata]
gi|408691427|gb|AFU82053.1| RNA polymerase II, partial [Morchella importuna]
gi|408691429|gb|AFU82054.1| RNA polymerase II, partial [Morchella frustrata]
gi|408691433|gb|AFU82056.1| RNA polymerase II, partial [Morchella importuna]
gi|408691445|gb|AFU82062.1| RNA polymerase II, partial [Morchella angusticeps]
gi|408691453|gb|AFU82066.1| RNA polymerase II, partial [Morchella sextelata]
gi|408691455|gb|AFU82067.1| RNA polymerase II, partial [Morchella septimelata]
gi|408691457|gb|AFU82068.1| RNA polymerase II, partial [Morchella septentrionalis]
gi|408691459|gb|AFU82069.1| RNA polymerase II, partial [Morchella punctipes]
Length = 290
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 53/64 (82%), Gaps = 1/64 (1%)
Query: 5 GTTKRF-SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
G ++F +KRD ST LR++E GIVDQVMLT N +G KF K+R+R+ +IPQIGDKFASRHG
Sbjct: 131 GQRQKFHTKRDVSTPLRSTENGIVDQVMLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHG 190
Query: 64 QKGT 67
QKGT
Sbjct: 191 QKGT 194
>gi|255717775|ref|XP_002555168.1| KLTH0G02970p [Lachancea thermotolerans]
gi|238936552|emb|CAR24731.1| KLTH0G02970p [Lachancea thermotolerans CBS 6340]
Length = 1220
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/57 (70%), Positives = 49/57 (85%)
Query: 11 SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
SKRD ST LR++E GIVDQV++T N +G KF K+RVR+ ++PQIGDKFASRHGQKGT
Sbjct: 929 SKRDASTPLRSTENGIVDQVLITTNQEGLKFVKVRVRTTKVPQIGDKFASRHGQKGT 985
>gi|103001800|gb|ABF71522.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
chlorophanum]
Length = 716
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK KRD ST LR++E GIVDQV+LT N +G KF K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 540 TKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKG 599
Query: 67 T 67
T
Sbjct: 600 T 600
>gi|406857846|gb|AFS64668.1| RNA polymerase II second largest subunit, partial [Chapsa dilatata]
Length = 305
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E GIVD+V+LT N +G KF K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 144 TKLHTKRDASTPLRSTENGIVDKVLLTTNQEGLKFVKVRMRTTKIPQIGDKFASRHGQKG 203
Query: 67 T 67
T
Sbjct: 204 T 204
>gi|293601946|gb|ADE48235.1| RNA polymerase II, partial [Verpa sp. M203]
Length = 290
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 53/64 (82%), Gaps = 1/64 (1%)
Query: 5 GTTKRF-SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
G ++F +KRD ST LR++E GIVDQVMLT N +G KF K+R+R+ +IPQIGDKFASRHG
Sbjct: 131 GQRQKFHTKRDVSTPLRSTENGIVDQVMLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHG 190
Query: 64 QKGT 67
QKGT
Sbjct: 191 QKGT 194
>gi|293601896|gb|ADE48210.1| RNA polymerase II, partial [Morchella populiphila]
gi|408691381|gb|AFU82030.1| RNA polymerase II, partial [Morchella populiphila]
gi|408691383|gb|AFU82031.1| RNA polymerase II, partial [Morchella populiphila]
gi|408691435|gb|AFU82057.1| RNA polymerase II, partial [Morchella populiphila]
Length = 290
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 53/64 (82%), Gaps = 1/64 (1%)
Query: 5 GTTKRF-SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
G ++F +KRD ST LR++E GIVDQVMLT N +G KF K+R+R+ +IPQIGDKFASRHG
Sbjct: 131 GQRQKFHTKRDVSTPLRSTENGIVDQVMLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHG 190
Query: 64 QKGT 67
QKGT
Sbjct: 191 QKGT 194
>gi|293601762|gb|ADE48285.1| RNA polymerase II [Morchella sp. Mes-8]
gi|293601764|gb|ADE48286.1| RNA polymerase II [Morchella sp. Mes-8]
gi|293601784|gb|ADE48296.1| RNA polymerase II [Morchella sp. Mes-8]
gi|293601800|gb|ADE48304.1| RNA polymerase II [Morchella sp. Mes-8]
gi|293601808|gb|ADE48308.1| RNA polymerase II [Morchella sp. Mes-8]
gi|357065315|gb|AET52448.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mes-8]
Length = 288
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/60 (68%), Positives = 50/60 (83%)
Query: 8 KRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
K +KRD ST LR++E GIVDQVMLT N +G KF K+R+R+ ++PQIGDKFASRHGQKGT
Sbjct: 135 KYHTKRDVSTPLRSTENGIVDQVMLTTNAEGLKFVKVRMRTTKVPQIGDKFASRHGQKGT 194
>gi|292661207|gb|ADE35219.1| RNA polymerase II [Morchella sp. Mel-19]
gi|292661209|gb|ADE35220.1| RNA polymerase II [Morchella sp. Mel-18]
gi|292661211|gb|ADE35221.1| RNA polymerase II [Morchella sp. Mel-13]
gi|292661213|gb|ADE35222.1| RNA polymerase II [Morchella angusticeps]
gi|292661215|gb|ADE35223.1| RNA polymerase II [Morchella septentrionalis]
gi|292661217|gb|ADE35224.1| RNA polymerase II [Morchella sp. Mel-21]
gi|292661219|gb|ADE35225.1| RNA polymerase II [Morchella angusticeps]
gi|292661221|gb|ADE35226.1| RNA polymerase II [Morchella snyderi]
gi|292661223|gb|ADE35227.1| RNA polymerase II [Morchella brunnea]
gi|292661225|gb|ADE35228.1| RNA polymerase II [Morchella brunnea]
gi|292661227|gb|ADE35229.1| RNA polymerase II [Morchella angusticeps]
gi|292661229|gb|ADE35230.1| RNA polymerase II [Morchella angusticeps]
gi|292661231|gb|ADE35231.1| RNA polymerase II [Morchella sp. Mel-23]
gi|292661237|gb|ADE35234.1| RNA polymerase II [Morchella sp. Mel-16]
gi|292661239|gb|ADE35235.1| RNA polymerase II [Morchella sp. Mel-16]
gi|292661241|gb|ADE35236.1| RNA polymerase II [Morchella brunnea]
gi|292661245|gb|ADE35238.1| RNA polymerase II [Morchella snyderi]
gi|292661247|gb|ADE35239.1| RNA polymerase II [Morchella snyderi]
gi|292661259|gb|ADE35245.1| RNA polymerase II [Morchella angusticeps]
gi|292661263|gb|ADE35247.1| RNA polymerase II [Morchella sp. Mel-13]
gi|292661265|gb|ADE35248.1| RNA polymerase II [Morchella sp. Mel-16]
gi|292661267|gb|ADE35249.1| RNA polymerase II [Morchella angusticeps]
gi|292661269|gb|ADE35250.1| RNA polymerase II [Morchella sp. Mel-23]
gi|292661273|gb|ADE35252.1| RNA polymerase II [Morchella angusticeps]
gi|292661275|gb|ADE35253.1| RNA polymerase II [Morchella brunnea]
gi|292661277|gb|ADE35254.1| RNA polymerase II [Morchella snyderi]
gi|292661279|gb|ADE35255.1| RNA polymerase II [Morchella brunnea]
gi|292661281|gb|ADE35256.1| RNA polymerase II [Morchella sp. Mel-14]
gi|292661285|gb|ADE35258.1| RNA polymerase II [Morchella sp. Mel-14]
gi|292661293|gb|ADE35262.1| RNA polymerase II [Morchella sp. Mel-13]
Length = 301
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/57 (71%), Positives = 49/57 (85%)
Query: 11 SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
+KRD ST LR++E GIVDQVMLT N +G KF K+R+R+ +IPQIGDKFASRHGQKGT
Sbjct: 144 TKRDVSTPLRSTENGIVDQVMLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKGT 200
>gi|292606616|gb|ADE34124.1| RNA polymerase II second largest subunit [Dothideomycetes sp. TRN
138]
Length = 187
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK KRD ST LR++E GIVDQV+LT NV+G KF K+R R+ ++PQIGDKFASRHGQKG
Sbjct: 121 TKLHVKRDVSTPLRSTENGIVDQVLLTTNVEGLKFVKVRTRTTKVPQIGDKFASRHGQKG 180
Query: 67 T 67
T
Sbjct: 181 T 181
>gi|103001922|gb|ABF71527.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
flavum]
Length = 701
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK KRD ST LR++E GIVDQV+LT N +G KF K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 529 TKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKG 588
Query: 67 T 67
T
Sbjct: 589 T 589
>gi|103001753|gb|ABF71520.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
chlorophanum]
Length = 699
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK KRD ST LR++E GIVDQV+LT N +G KF K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 527 TKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKG 586
Query: 67 T 67
T
Sbjct: 587 T 587
>gi|55273991|gb|AAV48866.1| RNA polymerase II second largest subunit [Ampulloclitocybe
clavipes]
Length = 654
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ ++RD ST L+++E+GIVDQV++T N +G KF K+RVRS RIPQIGDKFASRHGQKG
Sbjct: 523 TRTHTRRDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKG 582
Query: 67 T 67
T
Sbjct: 583 T 583
>gi|52699827|gb|AAU86975.1| DNA-dependent RNA polymerase II second largest subunit [Lecanora
concolor]
Length = 708
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E GIVDQV+++ N DG +F K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 534 TKAHTKRDISTPLRSTENGIVDQVLMSTNADGLRFAKVRMRTTKIPQIGDKFASRHGQKG 593
Query: 67 T 67
T
Sbjct: 594 T 594
>gi|396941918|gb|AFN89676.1| RNA polymerase II, partial [Zygoascus hellenicus]
Length = 779
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E GIVDQV+LT N +G +F K+R+R+ ++PQIGDKFASRHGQKG
Sbjct: 625 TKYHTKRDASTPLRSTENGIVDQVLLTTNQEGLRFVKVRMRTTKVPQIGDKFASRHGQKG 684
Query: 67 T 67
T
Sbjct: 685 T 685
>gi|396941809|gb|AFN89622.1| RNA polymerase II, partial [Saccharomycopsis capsularis]
Length = 773
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR +E GIVDQV+LT N +G KF K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 619 TKFHTKRDASTALRITENGIVDQVLLTTNQEGLKFSKVRMRTTKIPQIGDKFASRHGQKG 678
Query: 67 T 67
T
Sbjct: 679 T 679
>gi|357064621|gb|AET52131.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mel-8]
gi|357064635|gb|AET52138.1| DNA-dependent RNA polymerase II, partial [Morchella punctipes]
Length = 288
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 53/64 (82%), Gaps = 1/64 (1%)
Query: 5 GTTKRF-SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
G ++F +KRD ST LR++E GIVDQVMLT N +G KF K+R+R+ +IPQIGDKFASRHG
Sbjct: 131 GQRQKFHTKRDVSTPLRSTENGIVDQVMLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHG 190
Query: 64 QKGT 67
QKGT
Sbjct: 191 QKGT 194
>gi|103001334|gb|ABF71502.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
flavum]
Length = 690
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK KRD ST LR++E GIVDQV+LT N +G KF K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 520 TKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKG 579
Query: 67 T 67
T
Sbjct: 580 T 580
>gi|52699880|gb|AAU87001.1| DNA-dependent RNA polymerase II second largest subunit [Sporastatia
polyspora]
Length = 713
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK KRD ST LR++E GIVDQV+LT N +G +F K+R+R+ ++PQIGDKFASRHGQKG
Sbjct: 537 TKLHVKRDASTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKVPQIGDKFASRHGQKG 596
Query: 67 T 67
T
Sbjct: 597 T 597
>gi|45120564|gb|AAO64650.2| RNA polymerase II subunit RPB2, partial [Bondarzewia montana]
Length = 867
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ ++RD ST L+++E+GIVDQV++T N +G KF K+RVRS RIPQIGDKFASRHGQKG
Sbjct: 712 TRTHTRRDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKG 771
Query: 67 T 67
T
Sbjct: 772 T 772
>gi|6606111|gb|AAF19068.1|AF107796_1 DNA-dependent RNA polymerase II RPB140 [Exophiala jeanselmei]
Length = 937
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 41/60 (68%), Positives = 51/60 (85%)
Query: 8 KRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
K+ KRD ST LR++E+GIVDQVMLT DG++F K+RVR+ ++PQIGDKFASRHGQKGT
Sbjct: 737 KQHVKRDVSTPLRSTESGIVDQVMLTTTNDGHRFAKVRVRTTKVPQIGDKFASRHGQKGT 796
>gi|312204312|gb|ADQ47473.1| RNA polymerase II second largest subunit [Coenogonium pineti]
Length = 693
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 39/61 (63%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E+GIVD+V++T N +G KF K+R R+ ++PQIGDKFASRHGQKG
Sbjct: 544 TKLHTKRDASTALRSTESGIVDKVLITTNAEGLKFVKVRTRTTKVPQIGDKFASRHGQKG 603
Query: 67 T 67
T
Sbjct: 604 T 604
>gi|111283850|gb|ABH09217.1| RNA polymerase II second largest subunit, partial [Rhodotorula
mucilaginosa]
Length = 356
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/60 (70%), Positives = 50/60 (83%)
Query: 8 KRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
K +KRD ST L+++E G+VDQV+LT N +G KF KIRVRS RIP+IGDKFASRHGQKGT
Sbjct: 192 KTHTKRDVSTPLKSTENGLVDQVLLTTNSEGLKFVKIRVRSTRIPEIGDKFASRHGQKGT 251
>gi|300394680|gb|ADK11878.1| DNA-directed RNA polymerase II subunit two, partial [Amylocorticium
subsulphureum]
Length = 344
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ S+RD ST L+++E GIVDQV++T N +G KF K+RVRS R+PQIGDKFASRHGQKG
Sbjct: 182 TRTHSRRDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTRVPQIGDKFASRHGQKG 241
Query: 67 T 67
T
Sbjct: 242 T 242
>gi|92090854|gb|ABE73203.1| RNA polymerase II second largest subunit, partial [Hydropus cf.
scabripes PBM 2513]
Length = 687
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T + +KRD ST L+++E G VDQV++T N DG F K+RVRS+RIPQIGDKFASRHGQKG
Sbjct: 519 TSKHTKRDVSTPLKSTENGTVDQVLITTNSDGQTFVKVRVRSIRIPQIGDKFASRHGQKG 578
Query: 67 T 67
T
Sbjct: 579 T 579
>gi|406857794|gb|AFS64642.1| RNA polymerase II second largest subunit, partial [Myriotrema sp.
809canopy]
Length = 305
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E GIVD+V+LT N +G KF K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 144 TKLHTKRDASTPLRSTENGIVDKVLLTTNQEGLKFVKVRMRTTKIPQIGDKFASRHGQKG 203
Query: 67 T 67
T
Sbjct: 204 T 204
>gi|384492092|gb|AFH96451.1| RNA polymerase II subunit 2, partial [Morchella sextelata]
gi|384492094|gb|AFH96452.1| RNA polymerase II subunit 2, partial [Morchella septentrionalis]
gi|384492098|gb|AFH96454.1| RNA polymerase II subunit 2, partial [Morchella angusticeps]
Length = 321
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 41/57 (71%), Positives = 49/57 (85%)
Query: 11 SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
+KRD ST LR++E GIVDQVMLT N +G KF K+R+R+ +IPQIGDKFASRHGQKGT
Sbjct: 155 TKRDVSTPLRSTENGIVDQVMLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKGT 211
>gi|293601686|gb|ADE48247.1| RNA polymerase II [Morchella tomentosa]
gi|293601694|gb|ADE48251.1| RNA polymerase II [Morchella tomentosa]
gi|293601708|gb|ADE48258.1| RNA polymerase II [Morchella tomentosa]
gi|293601724|gb|ADE48266.1| RNA polymerase II [Morchella tomentosa]
gi|293601728|gb|ADE48268.1| RNA polymerase II [Morchella tomentosa]
gi|293601742|gb|ADE48275.1| RNA polymerase II [Morchella tomentosa]
gi|357064623|gb|AET52132.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mel-1]
gi|357064647|gb|AET52144.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mel-1]
Length = 288
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 53/64 (82%), Gaps = 1/64 (1%)
Query: 5 GTTKRF-SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
G ++F +KRD ST LR++E GIVDQVMLT N +G KF K+R+R+ +IPQIGDKFASRHG
Sbjct: 128 GQRQKFHTKRDVSTPLRSTENGIVDQVMLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHG 187
Query: 64 QKGT 67
QKGT
Sbjct: 188 QKGT 191
>gi|293601680|gb|ADE48244.1| RNA polymerase II [Morchella populiphila]
gi|357064613|gb|AET52127.1| DNA-dependent RNA polymerase II, partial [Morchella populiphila]
gi|357064629|gb|AET52135.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mel-3]
Length = 289
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 53/64 (82%), Gaps = 1/64 (1%)
Query: 5 GTTKRF-SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
G ++F +KRD ST LR++E GIVDQVMLT N +G KF K+R+R+ +IPQIGDKFASRHG
Sbjct: 129 GQRQKFHTKRDVSTPLRSTENGIVDQVMLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHG 188
Query: 64 QKGT 67
QKGT
Sbjct: 189 QKGT 192
>gi|292661255|gb|ADE35243.1| RNA polymerase II [Morchella sp. Mel-21]
Length = 296
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 41/57 (71%), Positives = 49/57 (85%)
Query: 11 SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
+KRD ST LR++E GIVDQVMLT N +G KF K+R+R+ +IPQIGDKFASRHGQKGT
Sbjct: 139 TKRDVSTPLRSTENGIVDQVMLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKGT 195
>gi|145307913|gb|ABP57260.1| RNA polymerase II second largest subunit, partial [Batkoa major]
Length = 302
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 41/57 (71%), Positives = 51/57 (89%)
Query: 11 SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
+K+D ST L+++ETGIVD+VMLT+N +G +F K+RVRS RIPQIGDKFASRHGQKGT
Sbjct: 145 TKKDVSTPLKSTETGIVDRVMLTINQEGMRFAKVRVRSTRIPQIGDKFASRHGQKGT 201
>gi|156065749|ref|XP_001598796.1| hypothetical protein SS1G_00885 [Sclerotinia sclerotiorum 1980]
gi|154691744|gb|EDN91482.1| hypothetical protein SS1G_00885 [Sclerotinia sclerotiorum 1980 UF-70]
Length = 1267
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK KRD ST LR++E+G+VDQV+LT N +G +F K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 970 TKAHVKRDASTPLRSTESGLVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKG 1029
Query: 67 T 67
T
Sbjct: 1030 T 1030
>gi|93278291|gb|ABF06601.1| RNA polymerase II second largest subunit, partial [Cheimonophyllum
candidissimum]
Length = 690
Score = 88.6 bits (218), Expect = 5e-16, Method: Composition-based stats.
Identities = 40/61 (65%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T ++RD ST L+++E+G+VDQV++T N DG KF K+R+RS RIPQIGDKFASRHGQKG
Sbjct: 520 TPTHTRRDVSTPLKSTESGMVDQVLITTNHDGQKFVKVRIRSTRIPQIGDKFASRHGQKG 579
Query: 67 T 67
T
Sbjct: 580 T 580
>gi|406864058|gb|EKD17104.1| DNA-directed RNA polymerase II subunit RPB2 [Marssonina brunnea f.
sp. 'multigermtubi' MB_m1]
Length = 1266
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 41/60 (68%), Positives = 50/60 (83%)
Query: 8 KRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
K +KRD ST LR++E GIVDQV+LT N +G KF K+R+R+ +IPQIGDKFASRHGQKGT
Sbjct: 971 KAHTKRDASTPLRSTENGIVDQVLLTTNSEGQKFVKVRMRTTKIPQIGDKFASRHGQKGT 1030
>gi|357064611|gb|AET52126.1| DNA-dependent RNA polymerase II, partial [Morchella importuna]
gi|357064617|gb|AET52129.1| DNA-dependent RNA polymerase II, partial [Morchella sextelata]
gi|357064619|gb|AET52130.1| DNA-dependent RNA polymerase II, partial [Morchella frustrata]
gi|357064625|gb|AET52133.1| DNA-dependent RNA polymerase II, partial [Morchella sextelata]
gi|357064639|gb|AET52140.1| DNA-dependent RNA polymerase II, partial [Morchella frustrata]
gi|357064641|gb|AET52141.1| DNA-dependent RNA polymerase II, partial [Morchella
septentrionalis]
gi|357064643|gb|AET52142.1| DNA-dependent RNA polymerase II, partial [Morchella populiphila]
gi|357064645|gb|AET52143.1| DNA-dependent RNA polymerase II, partial [Morchella importuna]
gi|357064649|gb|AET52145.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mel-20]
gi|357064651|gb|AET52146.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mel-13]
gi|357065027|gb|AET52304.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mel-20]
gi|357065031|gb|AET52306.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mel-17]
Length = 291
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 53/64 (82%), Gaps = 1/64 (1%)
Query: 5 GTTKRF-SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
G ++F +KRD ST LR++E GIVDQVMLT N +G KF K+R+R+ +IPQIGDKFASRHG
Sbjct: 131 GQRQKFHTKRDVSTPLRSTENGIVDQVMLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHG 190
Query: 64 QKGT 67
QKGT
Sbjct: 191 QKGT 194
>gi|293601690|gb|ADE48249.1| RNA polymerase II [Morchella importuna]
Length = 290
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 53/64 (82%), Gaps = 1/64 (1%)
Query: 5 GTTKRF-SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
G ++F +KRD ST LR++E GIVDQVMLT N +G KF K+R+R+ +IPQIGDKFASRHG
Sbjct: 130 GQRQKFHTKRDVSTPLRSTENGIVDQVMLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHG 189
Query: 64 QKGT 67
QKGT
Sbjct: 190 QKGT 193
>gi|83415475|gb|ABC17945.1| RNA polymerase II second largest subunit, partial [Scutellospora
heterogama]
Length = 761
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 40/57 (70%), Positives = 48/57 (84%)
Query: 11 SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
+ RD ST +R++E GIVDQVM+T N +G KF K+RVRS RIPQ+GDKFASRHGQKGT
Sbjct: 564 THRDASTPMRSTENGIVDQVMVTTNAEGMKFVKVRVRSTRIPQMGDKFASRHGQKGT 620
>gi|406857860|gb|AFS64675.1| RNA polymerase II second largest subunit, partial [Stegobolus
anamorphus]
Length = 305
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E+GIVD+V+LT N +G KF K+R+R+ ++PQIGDKFASRHGQKG
Sbjct: 144 TKLHTKRDASTPLRSTESGIVDKVLLTTNQEGLKFVKVRMRTTKVPQIGDKFASRHGQKG 203
Query: 67 T 67
T
Sbjct: 204 T 204
>gi|406857842|gb|AFS64666.1| RNA polymerase II second largest subunit, partial [Rhabdodiscus
isidiiferus]
Length = 305
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E GIVD+V+LT N +G KF K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 144 TKLHTKRDASTPLRSTENGIVDKVLLTTNQEGLKFVKVRMRTTKIPQIGDKFASRHGQKG 203
Query: 67 T 67
T
Sbjct: 204 T 204
>gi|297528107|gb|ADI46098.1| DNA-dependent RNA polymerase II [Morchella sp. Mes-8]
gi|297528109|gb|ADI46099.1| DNA-dependent RNA polymerase II [Morchella sp. Mes-17]
gi|297528149|gb|ADI46119.1| DNA-dependent RNA polymerase II [Morchella sp. Mes-17]
gi|297528151|gb|ADI46120.1| DNA-dependent RNA polymerase II [Morchella sp. Mes-17]
Length = 318
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 41/60 (68%), Positives = 50/60 (83%)
Query: 8 KRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
K +KRD ST LR++E GIVDQVMLT N +G KF K+R+R+ ++PQIGDKFASRHGQKGT
Sbjct: 151 KYHTKRDVSTPLRSTENGIVDQVMLTTNAEGLKFVKVRMRTTKVPQIGDKFASRHGQKGT 210
>gi|297528029|gb|ADI46059.1| DNA-dependent RNA polymerase II [Morchella sp. Mel-31]
gi|297528031|gb|ADI46060.1| DNA-dependent RNA polymerase II [Morchella sp. Mel-27]
gi|297528033|gb|ADI46061.1| DNA-dependent RNA polymerase II [Morchella importuna]
gi|297528035|gb|ADI46062.1| DNA-dependent RNA polymerase II [Morchella sp. Mel-27]
gi|297528037|gb|ADI46063.1| DNA-dependent RNA polymerase II [Morchella sp. Mel-26]
gi|297528039|gb|ADI46064.1| DNA-dependent RNA polymerase II [Morchella sp. Mel-26]
gi|297528041|gb|ADI46065.1| DNA-dependent RNA polymerase II [Morchella sp. Mel-20]
gi|297528043|gb|ADI46066.1| DNA-dependent RNA polymerase II [Morchella sp. Mel-26]
gi|297528045|gb|ADI46067.1| DNA-dependent RNA polymerase II [Morchella frustrata]
gi|297528047|gb|ADI46068.1| DNA-dependent RNA polymerase II [Morchella frustrata]
gi|297528049|gb|ADI46069.1| DNA-dependent RNA polymerase II [Morchella frustrata]
gi|297528051|gb|ADI46070.1| DNA-dependent RNA polymerase II [Morchella sp. Mel-29]
gi|297528053|gb|ADI46071.1| DNA-dependent RNA polymerase II [Morchella sp. Mel-26]
gi|297528057|gb|ADI46073.1| DNA-dependent RNA polymerase II [Morchella sp. Mel-20]
gi|297528059|gb|ADI46074.1| DNA-dependent RNA polymerase II [Morchella populiphila]
gi|297528061|gb|ADI46075.1| DNA-dependent RNA polymerase II [Morchella sp. Mel-20]
gi|297528063|gb|ADI46076.1| DNA-dependent RNA polymerase II [Morchella sp. Mel-2]
gi|297528065|gb|ADI46077.1| DNA-dependent RNA polymerase II [Morchella sp. Mel-2]
gi|297528067|gb|ADI46078.1| DNA-dependent RNA polymerase II [Morchella sp. Mel-20]
gi|297528069|gb|ADI46079.1| DNA-dependent RNA polymerase II [Morchella sp. Mel-20]
gi|297528071|gb|ADI46080.1| DNA-dependent RNA polymerase II [Morchella sp. Mel-20]
gi|297528073|gb|ADI46081.1| DNA-dependent RNA polymerase II [Morchella sp. Mel-20]
gi|297528075|gb|ADI46082.1| DNA-dependent RNA polymerase II [Morchella sp. Mel-20]
gi|297528079|gb|ADI46084.1| DNA-dependent RNA polymerase II [Morchella sp. Mel-20]
gi|297528081|gb|ADI46085.1| DNA-dependent RNA polymerase II [Morchella sp. Mel-30]
gi|297528083|gb|ADI46086.1| DNA-dependent RNA polymerase II [Morchella sp. Mel-20]
gi|297528085|gb|ADI46087.1| DNA-dependent RNA polymerase II [Morchella sp. Mel-2]
gi|297528087|gb|ADI46088.1| DNA-dependent RNA polymerase II [Morchella sp. Mel-2]
gi|297528089|gb|ADI46089.1| DNA-dependent RNA polymerase II [Morchella sp. Mel-2]
gi|297528091|gb|ADI46090.1| DNA-dependent RNA polymerase II [Morchella sp. Mel-8]
gi|297528093|gb|ADI46091.1| DNA-dependent RNA polymerase II [Morchella sp. Mel-31]
gi|297528095|gb|ADI46092.1| DNA-dependent RNA polymerase II [Morchella sp. Mel-31]
gi|297528097|gb|ADI46093.1| DNA-dependent RNA polymerase II [Morchella sp. Mel-27]
gi|297528099|gb|ADI46094.1| DNA-dependent RNA polymerase II [Morchella sp. Mel-31]
gi|297528101|gb|ADI46095.1| DNA-dependent RNA polymerase II [Morchella sp. Mel-3]
gi|297528103|gb|ADI46096.1| DNA-dependent RNA polymerase II [Morchella sp. Mel-3]
gi|297528105|gb|ADI46097.1| DNA-dependent RNA polymerase II [Morchella sp. Mel-3]
gi|297528111|gb|ADI46100.1| DNA-dependent RNA polymerase II [Morchella septimelata]
gi|297528113|gb|ADI46101.1| DNA-dependent RNA polymerase II [Morchella importuna]
gi|297528115|gb|ADI46102.1| DNA-dependent RNA polymerase II [Morchella septimelata]
gi|297528117|gb|ADI46103.1| DNA-dependent RNA polymerase II [Morchella septimelata]
gi|297528119|gb|ADI46104.1| DNA-dependent RNA polymerase II [Morchella septimelata]
gi|297528121|gb|ADI46105.1| DNA-dependent RNA polymerase II [Morchella septimelata]
gi|297528123|gb|ADI46106.1| DNA-dependent RNA polymerase II [Morchella septimelata]
gi|297528125|gb|ADI46107.1| DNA-dependent RNA polymerase II [Morchella sp. Mel-27]
gi|297528127|gb|ADI46108.1| DNA-dependent RNA polymerase II [Morchella sp. Mel-8]
gi|297528129|gb|ADI46109.1| DNA-dependent RNA polymerase II [Morchella sp. Mel-20]
gi|297528131|gb|ADI46110.1| DNA-dependent RNA polymerase II [Morchella sp. Mel-20]
gi|297528133|gb|ADI46111.1| DNA-dependent RNA polymerase II [Morchella sp. Mel-29]
gi|297528135|gb|ADI46112.1| DNA-dependent RNA polymerase II [Morchella sp. Mel-20]
gi|297528137|gb|ADI46113.1| DNA-dependent RNA polymerase II [Morchella sp. Mel-8]
gi|297528141|gb|ADI46115.1| DNA-dependent RNA polymerase II [Morchella sp. Mel-29]
gi|297528143|gb|ADI46116.1| DNA-dependent RNA polymerase II [Morchella importuna]
gi|297528147|gb|ADI46118.1| DNA-dependent RNA polymerase II [Morchella septimelata]
Length = 318
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 41/57 (71%), Positives = 49/57 (85%)
Query: 11 SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
+KRD ST LR++E GIVDQVMLT N +G KF K+R+R+ +IPQIGDKFASRHGQKGT
Sbjct: 154 TKRDVSTPLRSTENGIVDQVMLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKGT 210
>gi|293601756|gb|ADE48282.1| RNA polymerase II [Morchella sp. Mes-5]
gi|293601760|gb|ADE48284.1| RNA polymerase II [Morchella sp. Mes-8]
gi|293601774|gb|ADE48291.1| RNA polymerase II [Morchella cryptica]
gi|293601782|gb|ADE48295.1| RNA polymerase II [Morchella sp. Mes-9]
gi|293601794|gb|ADE48301.1| RNA polymerase II [Morchella sp. Mes-9]
gi|293601802|gb|ADE48305.1| RNA polymerase II [Morchella cryptica]
gi|293601810|gb|ADE48309.1| RNA polymerase II [Morchella cryptica]
gi|293601820|gb|ADE48314.1| RNA polymerase II [Morchella cryptica]
gi|357065279|gb|AET52430.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mes-5]
gi|357065283|gb|AET52432.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mes-8]
gi|357065299|gb|AET52440.1| DNA-dependent RNA polymerase II, partial [Morchella cryptica]
gi|357065305|gb|AET52443.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mes-9]
gi|357065309|gb|AET52445.1| DNA-dependent RNA polymerase II, partial [Morchella prava]
gi|357065313|gb|AET52447.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mes-9]
gi|357065319|gb|AET52450.1| DNA-dependent RNA polymerase II, partial [Morchella cryptica]
Length = 291
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 41/60 (68%), Positives = 50/60 (83%)
Query: 8 KRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
K +KRD ST LR++E GIVDQVMLT N +G KF K+R+R+ ++PQIGDKFASRHGQKGT
Sbjct: 135 KYHTKRDVSTPLRSTENGIVDQVMLTTNAEGLKFVKVRMRTTKVPQIGDKFASRHGQKGT 194
>gi|384935650|gb|AFI32315.1| RNA polymerase II subunit 2, partial [Morchella sp. Mel-13]
gi|384935652|gb|AFI32316.1| RNA polymerase II subunit 2, partial [Morchella importuna]
gi|384935656|gb|AFI32318.1| RNA polymerase II subunit 2, partial [Morchella septimelata]
gi|384935658|gb|AFI32319.1| RNA polymerase II subunit 2, partial [Morchella sextelata]
gi|384935662|gb|AFI32321.1| RNA polymerase II subunit 2, partial [Morchella populiphila]
gi|384935664|gb|AFI32322.1| RNA polymerase II subunit 2, partial [Morchella populiphila]
gi|384935666|gb|AFI32323.1| RNA polymerase II subunit 2, partial [Morchella populiphila]
gi|384935668|gb|AFI32324.1| RNA polymerase II subunit 2, partial [Morchella sp. Mel-21]
gi|384935670|gb|AFI32325.1| RNA polymerase II subunit 2, partial [Morchella sp. Mel-21]
gi|384935672|gb|AFI32326.1| RNA polymerase II subunit 2, partial [Morchella sp. Mel-13]
gi|384935674|gb|AFI32327.1| RNA polymerase II subunit 2, partial [Morchella sp. Mel-13]
gi|384935676|gb|AFI32328.1| RNA polymerase II subunit 2, partial [Morchella sp. Mel-13]
gi|384935678|gb|AFI32329.1| RNA polymerase II subunit 2, partial [Morchella sp. Mel-14]
gi|384935680|gb|AFI32330.1| RNA polymerase II subunit 2, partial [Morchella sp. Mel-13]
gi|384935682|gb|AFI32331.1| RNA polymerase II subunit 2, partial [Morchella sp. Mel-31]
gi|384935686|gb|AFI32333.1| RNA polymerase II subunit 2, partial [Morchella sp. Mel-14]
gi|384935688|gb|AFI32334.1| RNA polymerase II subunit 2, partial [Morchella sp. Mel-13]
gi|384935690|gb|AFI32335.1| RNA polymerase II subunit 2, partial [Morchella sp. Mel-33]
gi|384935692|gb|AFI32336.1| RNA polymerase II subunit 2, partial [Morchella sp. Mel-21]
gi|384935694|gb|AFI32337.1| RNA polymerase II subunit 2, partial [Morchella sp. Mel-20]
gi|384935696|gb|AFI32338.1| RNA polymerase II subunit 2, partial [Morchella sp. Mel-34]
gi|384935698|gb|AFI32339.1| RNA polymerase II subunit 2, partial [Morchella sp. Mel-31]
gi|384935700|gb|AFI32340.1| RNA polymerase II subunit 2, partial [Morchella sp. Mel-16]
gi|384935702|gb|AFI32341.1| RNA polymerase II subunit 2, partial [Morchella sp. Mel-16]
gi|384935704|gb|AFI32342.1| RNA polymerase II subunit 2, partial [Morchella sp. Mel-13]
gi|384935706|gb|AFI32343.1| RNA polymerase II subunit 2, partial [Morchella septimelata]
gi|384935708|gb|AFI32344.1| RNA polymerase II subunit 2, partial [Morchella importuna]
gi|384935710|gb|AFI32345.1| RNA polymerase II subunit 2, partial [Morchella importuna]
gi|384935712|gb|AFI32346.1| RNA polymerase II subunit 2, partial [Morchella sp. Mel-13]
Length = 284
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 53/64 (82%), Gaps = 1/64 (1%)
Query: 5 GTTKRF-SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
G ++F +KRD ST LR++E GIVDQVMLT N +G KF K+R+R+ +IPQIGDKFASRHG
Sbjct: 127 GQRQKFHTKRDVSTPLRSTENGIVDQVMLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHG 186
Query: 64 QKGT 67
QKGT
Sbjct: 187 QKGT 190
>gi|293601704|gb|ADE48256.1| RNA polymerase II [Morchella sextelata]
gi|293601714|gb|ADE48261.1| RNA polymerase II [Morchella sextelata]
Length = 293
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 53/64 (82%), Gaps = 1/64 (1%)
Query: 5 GTTKRF-SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
G ++F +KRD ST LR++E GIVDQVMLT N +G KF K+R+R+ +IPQIGDKFASRHG
Sbjct: 133 GQRQKFHTKRDVSTPLRSTENGIVDQVMLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHG 192
Query: 64 QKGT 67
QKGT
Sbjct: 193 QKGT 196
>gi|293601688|gb|ADE48248.1| RNA polymerase II [Morchella sextelata]
gi|293601730|gb|ADE48269.1| RNA polymerase II [Morchella populiphila]
gi|293601736|gb|ADE48272.1| RNA polymerase II [Morchella importuna]
Length = 294
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 53/64 (82%), Gaps = 1/64 (1%)
Query: 5 GTTKRF-SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
G ++F +KRD ST LR++E GIVDQVMLT N +G KF K+R+R+ +IPQIGDKFASRHG
Sbjct: 134 GQRQKFHTKRDVSTPLRSTENGIVDQVMLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHG 193
Query: 64 QKGT 67
QKGT
Sbjct: 194 QKGT 197
>gi|189030780|gb|ABD59038.2| RNA polymerase II second largest subunit [Lepista irina]
Length = 659
Score = 88.6 bits (218), Expect = 5e-16, Method: Composition-based stats.
Identities = 40/61 (65%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ ++RD ST L+++E+GIVDQV++T N +G KF K+RVRS RIPQ GDKFASRHGQKG
Sbjct: 520 TRTHTRRDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRSTRIPQTGDKFASRHGQKG 579
Query: 67 T 67
T
Sbjct: 580 T 580
>gi|120561243|gb|ABM27006.1| RNA polymerase II second largest subunit, partial [Zancudomyces
culisetae]
gi|363543580|gb|AEW26268.1| RPB2 [Zancudomyces culisetae]
Length = 899
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 41/57 (71%), Positives = 48/57 (84%)
Query: 11 SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
+K D S LR +E+GIVDQV+LT N DG+KF K+RVRS R+PQIGDKFASRHGQKGT
Sbjct: 702 TKLDASKPLRATESGIVDQVLLTTNGDGFKFVKVRVRSTRVPQIGDKFASRHGQKGT 758
>gi|46277356|gb|AAS86868.1| DNA-dependent RNA polymerase II [Peziza sp. PM-120-97]
Length = 548
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E GIVDQVM+T N +G KF K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 392 TKFHTKRDTSTPLRSTENGIVDQVMVTTNQEGLKFVKVRMRTTKIPQIGDKFASRHGQKG 451
Query: 67 T 67
T
Sbjct: 452 T 452
>gi|396941935|gb|AFN89684.1| RNA polymerase II, partial [Starmerella bombicola]
Length = 774
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E+GIVDQV+LT N +G +F K+R+R+ ++PQIGDKFASRHGQKG
Sbjct: 620 TKFHTKRDASTPLRSTESGIVDQVLLTTNQEGLRFVKVRMRTTKVPQIGDKFASRHGQKG 679
Query: 67 T 67
T
Sbjct: 680 T 680
>gi|384935660|gb|AFI32320.1| RNA polymerase II subunit 2, partial [Morchella sp. Mel-19]
gi|384935684|gb|AFI32332.1| RNA polymerase II subunit 2, partial [Morchella sp. Mel-19]
Length = 284
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 53/64 (82%), Gaps = 1/64 (1%)
Query: 5 GTTKRF-SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
G ++F +KRD ST LR++E GIVDQVMLT N +G KF K+R+R+ +IPQIGDKFASRHG
Sbjct: 127 GQRQKFHTKRDVSTPLRSTENGIVDQVMLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHG 186
Query: 64 QKGT 67
QKGT
Sbjct: 187 QKGT 190
>gi|357064615|gb|AET52128.1| DNA-dependent RNA polymerase II, partial [Morchella populiphila]
gi|357064631|gb|AET52136.1| DNA-dependent RNA polymerase II, partial [Morchella populiphila]
Length = 291
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 53/64 (82%), Gaps = 1/64 (1%)
Query: 5 GTTKRF-SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
G ++F +KRD ST LR++E GIVDQVMLT N +G KF K+R+R+ +IPQIGDKFASRHG
Sbjct: 131 GQRQKFHTKRDVSTPLRSTENGIVDQVMLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHG 190
Query: 64 QKGT 67
QKGT
Sbjct: 191 QKGT 194
>gi|219564063|gb|ACL28215.1| RNA polymerase II second largest subunit, partial [Discinella
schimperi]
Length = 239
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK KRD ST LR++E GIVDQV++T N +G +F K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 140 TKAHVKRDASTPLRSTENGIVDQVLITTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKG 199
Query: 67 T 67
T
Sbjct: 200 T 200
>gi|103001602|gb|ABF71514.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
flavum]
Length = 694
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK KRD ST LR++E GIVDQV+LT N +G KF K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 524 TKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKG 583
Query: 67 T 67
T
Sbjct: 584 T 584
>gi|6606135|gb|AAF19080.1|AF107808_1 DNA-dependent RNA polymerase II RPB140, partial [Sclerotinia
sclerotiorum]
Length = 938
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK KRD ST LR++E+G+VDQV+LT N +G +F K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 737 TKAHVKRDASTPLRSTESGLVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKG 796
Query: 67 T 67
T
Sbjct: 797 T 797
>gi|45198922|ref|NP_985951.1| AFR404Cp [Ashbya gossypii ATCC 10895]
gi|51701974|sp|Q753Q4.1|RPB2_ASHGO RecName: Full=DNA-directed RNA polymerase II subunit RPB2;
Short=RNA polymerase II subunit 2; Short=RNA polymerase
II subunit B2
gi|44984951|gb|AAS53775.1| AFR404Cp [Ashbya gossypii ATCC 10895]
gi|374109181|gb|AEY98087.1| FAFR404Cp [Ashbya gossypii FDAG1]
Length = 1222
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 40/57 (70%), Positives = 49/57 (85%)
Query: 11 SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
SKRD ST LR++E GIVDQV++T N +G KF K+RVR+ ++PQIGDKFASRHGQKGT
Sbjct: 931 SKRDASTPLRSTENGIVDQVLITTNQEGLKFVKVRVRTTKVPQIGDKFASRHGQKGT 987
>gi|357065005|gb|AET52293.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mel-20]
gi|357065007|gb|AET52294.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mel-19]
gi|357065047|gb|AET52314.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mel-19]
Length = 292
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 53/64 (82%), Gaps = 1/64 (1%)
Query: 5 GTTKRF-SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
G ++F +KRD ST LR++E GIVDQVMLT N +G KF K+R+R+ +IPQIGDKFASRHG
Sbjct: 131 GQRQKFHTKRDVSTPLRSTENGIVDQVMLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHG 190
Query: 64 QKGT 67
QKGT
Sbjct: 191 QKGT 194
>gi|194320135|gb|ACF48288.1| DNA-dependent RNA polymerase II second largest subunit [Lecanora
polytropa]
Length = 316
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E GIVDQV+++ N DG +F K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 149 TKAHTKRDISTPLRSTENGIVDQVLMSTNADGLRFAKVRMRTTKIPQIGDKFASRHGQKG 208
Query: 67 T 67
T
Sbjct: 209 T 209
>gi|293601768|gb|ADE48288.1| RNA polymerase II [Morchella sp. Mes-14]
gi|293601778|gb|ADE48293.1| RNA polymerase II [Morchella sp. Mes-6]
gi|293601792|gb|ADE48300.1| RNA polymerase II [Morchella sp. Mes-5]
gi|293601798|gb|ADE48303.1| RNA polymerase II [Morchella sp. Mes-14]
gi|293601806|gb|ADE48307.1| RNA polymerase II [Morchella sp. Mes-13]
gi|293601840|gb|ADE48324.1| RNA polymerase II [Morchella prava]
gi|293601858|gb|ADE48333.1| RNA polymerase II [Morchella prava]
gi|357065289|gb|AET52435.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mes-14]
gi|357065291|gb|AET52436.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mes-13]
gi|357065301|gb|AET52441.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mes-6]
gi|357065311|gb|AET52446.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mes-5]
gi|357065317|gb|AET52449.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mes-5]
gi|357065323|gb|AET52452.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mes-13]
gi|357065325|gb|AET52453.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mes-15]
gi|357065327|gb|AET52454.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mes-6]
gi|357065335|gb|AET52458.1| DNA-dependent RNA polymerase II, partial [Morchella prava]
Length = 293
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 41/60 (68%), Positives = 50/60 (83%)
Query: 8 KRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
K +KRD ST LR++E GIVDQVMLT N +G KF K+R+R+ ++PQIGDKFASRHGQKGT
Sbjct: 135 KYHTKRDVSTPLRSTENGIVDQVMLTTNAEGLKFVKVRMRTTKVPQIGDKFASRHGQKGT 194
>gi|123979384|gb|ABM81517.1| RNA polymerase II second largest subunit [Parmeliella sp. AFTOL
334]
Length = 631
Score = 88.6 bits (218), Expect = 5e-16, Method: Composition-based stats.
Identities = 41/61 (67%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK KRD ST LR++E GIVDQV+LT N +G +F K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 474 TKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLRFVKVRMRTTKIPQIGDKFASRHGQKG 533
Query: 67 T 67
T
Sbjct: 534 T 534
>gi|46277360|gb|AAS86870.1| DNA-dependent RNA polymerase II [Peziza obtuspiculata]
Length = 490
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E GIVDQVM+T N +G KF K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 362 TKFHTKRDTSTPLRSTENGIVDQVMVTTNQEGLKFVKVRMRTTKIPQIGDKFASRHGQKG 421
Query: 67 T 67
T
Sbjct: 422 T 422
>gi|357065009|gb|AET52295.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mel-18]
gi|357065011|gb|AET52296.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mel-13]
gi|357065013|gb|AET52297.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mel-21]
gi|357065015|gb|AET52298.1| DNA-dependent RNA polymerase II, partial [Morchella snyderi]
gi|357065017|gb|AET52299.1| DNA-dependent RNA polymerase II, partial [Morchella brunnea]
gi|357065019|gb|AET52300.1| DNA-dependent RNA polymerase II, partial [Morchella angusticeps]
gi|357065021|gb|AET52301.1| DNA-dependent RNA polymerase II, partial [Morchella angusticeps]
gi|357065023|gb|AET52302.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mel-23]
gi|357065025|gb|AET52303.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mel-16]
gi|357065029|gb|AET52305.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mel-21]
gi|357065033|gb|AET52307.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mel-13]
gi|357065035|gb|AET52308.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mel-16]
gi|357065037|gb|AET52309.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mel-23]
gi|357065039|gb|AET52310.1| DNA-dependent RNA polymerase II, partial [Morchella snyderi]
gi|357065041|gb|AET52311.1| DNA-dependent RNA polymerase II, partial [Morchella brunnea]
gi|357065043|gb|AET52312.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mel-14]
gi|357065045|gb|AET52313.1| DNA-dependent RNA polymerase II, partial [Morchella sp. Mel-14]
Length = 295
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 41/57 (71%), Positives = 49/57 (85%)
Query: 11 SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
+KRD ST LR++E GIVDQVMLT N +G KF K+R+R+ +IPQIGDKFASRHGQKGT
Sbjct: 138 TKRDVSTPLRSTENGIVDQVMLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKGT 194
>gi|320172596|gb|ADW24181.1| RNA polymerase II second largest subunit [Neolentinus lepideus]
Length = 655
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ ++RD ST L+++E GIVDQV++T N +G KF K+RVRS RIPQIGDKFASRHGQKG
Sbjct: 525 TRSHTRRDVSTALKSTEQGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKG 584
Query: 67 T 67
T
Sbjct: 585 T 585
>gi|258562134|gb|ACV81789.1| RNA polymerase II second largest subunit [Tephrocybe rancida]
Length = 622
Score = 88.6 bits (218), Expect = 5e-16, Method: Composition-based stats.
Identities = 40/61 (65%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ ++RD ST L+++E+GIVDQV++T N +G KF K+RVRS RIPQ GDKFASRHGQKG
Sbjct: 501 TRTHTRRDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRSTRIPQTGDKFASRHGQKG 560
Query: 67 T 67
T
Sbjct: 561 T 561
>gi|88976158|gb|ABD59039.1| RNA polymerase II second largest subunit, partial [Macrolepiota
dolichaula]
Length = 882
Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ ++RD ST L+++E+GIVDQV++T N +G KF K+RVRS RIPQIGDKFASRHGQKG
Sbjct: 696 TRTHTRRDVSTPLKSTESGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKG 755
Query: 67 T 67
T
Sbjct: 756 T 756
>gi|323449030|gb|EGB04921.1| hypothetical protein AURANDRAFT_38738 [Aureococcus anophagefferens]
Length = 1147
Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 39/59 (66%), Positives = 51/59 (86%)
Query: 9 RFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
+F+K+D ST +R +E+G+VDQVML+ N +G KF K+R R++RIPQIGDKFASRHGQKGT
Sbjct: 835 QFTKQDSSTAMRPNESGLVDQVMLSTNQEGMKFTKVRTRTIRIPQIGDKFASRHGQKGT 893
>gi|224177811|gb|ACN38877.1| RNA polymerase II subunit [Mycosphaerella pneumatophorae]
Length = 594
Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E GIVDQV+LT N +G KF K+R R+ ++PQIGDKFASRHGQKG
Sbjct: 515 TKMHTKRDVSTPLRSTENGIVDQVLLTTNTEGNKFVKVRTRTTKVPQIGDKFASRHGQKG 574
Query: 67 T 67
T
Sbjct: 575 T 575
>gi|103002027|gb|ABF71533.1| DNA-dependent RNA polymerase II second largest subunit [Pleopsidium
sp. Zhurbenko 92515]
Length = 305
Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK KRD ST LR++E GIVDQV+LT N +G KF K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 132 TKLHVKRDVSTPLRSTENGIVDQVLLTTNAEGLKFVKVRMRTTKIPQIGDKFASRHGQKG 191
Query: 67 T 67
T
Sbjct: 192 T 192
>gi|46277354|gb|AAS86867.1| DNA-dependent RNA polymerase II [Peziza succosa]
Length = 561
Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E GIVDQVM+T N +G KF K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 399 TKFHTKRDTSTPLRSTENGIVDQVMVTTNQEGLKFVKVRMRTTKIPQIGDKFASRHGQKG 458
Query: 67 T 67
T
Sbjct: 459 T 459
>gi|363752349|ref|XP_003646391.1| hypothetical protein Ecym_4538 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890026|gb|AET39574.1| hypothetical protein Ecym_4538 [Eremothecium cymbalariae
DBVPG#7215]
Length = 1222
Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 40/57 (70%), Positives = 49/57 (85%)
Query: 11 SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
SKRD ST LR++E GIVDQV++T N +G KF K+RVR+ ++PQIGDKFASRHGQKGT
Sbjct: 931 SKRDASTPLRSTENGIVDQVLITTNQEGLKFVKVRVRTTKVPQIGDKFASRHGQKGT 987
>gi|320172582|gb|ADW24174.1| RNA polymerase II second largest subunit [Gloeophyllum carbonarium]
Length = 461
Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ ++RD ST L+++E+GIVDQV++T N +G KF K+RVRS R+PQIGDKFASRHGQKG
Sbjct: 304 TRSHTRRDVSTALKSTESGIVDQVLITTNSEGQKFVKVRVRSTRVPQIGDKFASRHGQKG 363
Query: 67 T 67
T
Sbjct: 364 T 364
>gi|312204326|gb|ADQ47480.1| RNA polymerase II second largest subunit [Graphis scripta]
Length = 502
Score = 88.2 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 40/61 (65%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E GIVD+V+LT N +G KF K+R+R+ ++PQIGDKFASRHGQKG
Sbjct: 365 TKLHTKRDASTPLRSTENGIVDKVLLTTNQEGLKFVKVRMRTTKVPQIGDKFASRHGQKG 424
Query: 67 T 67
T
Sbjct: 425 T 425
>gi|86559341|gb|ABD04078.1| RNA polymerase II second largest subunit, partial [Aureoboletus
thibetanus]
Length = 692
Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ ++RD ST L+++E GIVDQV++T N +G KF K+RVRS RIPQIGDKFASRHGQKG
Sbjct: 516 TRTHTRRDVSTPLKSTENGIVDQVLITTNSEGQKFVKVRVRSTRIPQIGDKFASRHGQKG 575
Query: 67 T 67
T
Sbjct: 576 T 576
>gi|406857850|gb|AFS64670.1| RNA polymerase II second largest subunit, partial [Rhabdodiscus
isidiiferus]
Length = 305
Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E GIVD+V+LT N +G KF K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 144 TKLHTKRDASTPLRSTENGIVDKVLLTTNQEGLKFVKVRMRTTKIPQIGDKFASRHGQKG 203
Query: 67 T 67
T
Sbjct: 204 T 204
>gi|312204358|gb|ADQ47496.1| RNA polymerase II second largest subunit [Porina byssophila]
Length = 687
Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E GIVD+VMLT N +G F K+R+R+ ++PQIGDKFASRHGQKG
Sbjct: 563 TKLHTKRDASTPLRSTENGIVDKVMLTTNAEGLPFVKVRMRTTKVPQIGDKFASRHGQKG 622
Query: 67 T 67
T
Sbjct: 623 T 623
>gi|406857858|gb|AFS64674.1| RNA polymerase II second largest subunit, partial [Rhabdodiscus
isidiiferus]
Length = 305
Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 51/61 (83%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
TK +KRD ST LR++E GIVD+V+LT N +G KF K+R+R+ +IPQIGDKFASRHGQKG
Sbjct: 144 TKLHTKRDASTPLRSTENGIVDKVLLTTNQEGLKFVKVRMRTTKIPQIGDKFASRHGQKG 203
Query: 67 T 67
T
Sbjct: 204 T 204
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.322 0.137 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 942,739,828
Number of Sequences: 23463169
Number of extensions: 26434992
Number of successful extensions: 54364
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 3968
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 50153
Number of HSP's gapped (non-prelim): 4009
length of query: 67
length of database: 8,064,228,071
effective HSP length: 39
effective length of query: 28
effective length of database: 7,149,164,480
effective search space: 200176605440
effective search space used: 200176605440
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 69 (31.2 bits)