BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7584
(67 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P08266|RPB2_DROME DNA-directed RNA polymerase II subunit RPB2 OS=Drosophila
melanogaster GN=RpII140 PE=2 SV=2
Length = 1176
Score = 126 bits (317), Expect = 3e-29, Method: Composition-based stats.
Identities = 59/65 (90%), Positives = 61/65 (93%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
L+ TKRFSKRD STFLRNSETGIVDQVMLTLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 882 LDSNTKRFSKRDASTFLRNSETGIVDQVMLTLNSEGYKFCKIRVRSVRIPQIGDKFASRH 941
Query: 63 GQKGT 67
GQKGT
Sbjct: 942 GQKGT 946
>sp|Q8CFI7|RPB2_MOUSE DNA-directed RNA polymerase II subunit RPB2 OS=Mus musculus
GN=Polr2b PE=2 SV=2
Length = 1174
Score = 119 bits (299), Expect = 4e-27, Method: Composition-based stats.
Identities = 55/65 (84%), Positives = 60/65 (92%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
LE T +R++KRD STFLR SETGIVDQVM+TLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 880 LESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRH 939
Query: 63 GQKGT 67
GQKGT
Sbjct: 940 GQKGT 944
>sp|P30876|RPB2_HUMAN DNA-directed RNA polymerase II subunit RPB2 OS=Homo sapiens
GN=POLR2B PE=1 SV=1
Length = 1174
Score = 119 bits (299), Expect = 4e-27, Method: Composition-based stats.
Identities = 55/65 (84%), Positives = 60/65 (92%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
LE T +R++KRD STFLR SETGIVDQVM+TLN +GYKFCKIRVRSVRIPQIGDKFASRH
Sbjct: 880 LESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRH 939
Query: 63 GQKGT 67
GQKGT
Sbjct: 940 GQKGT 944
>sp|Q10578|RPB2_CAEEL DNA-directed RNA polymerase II subunit RPB2 OS=Caenorhabditis
elegans GN=rpb-2 PE=2 SV=2
Length = 1193
Score = 108 bits (270), Expect = 1e-23, Method: Composition-based stats.
Identities = 50/65 (76%), Positives = 58/65 (89%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
L+ + K++ KRD STFLR+SETGIVDQVML+LN DG KF KIR+RSVR+PQIGDKFASRH
Sbjct: 886 LDASGKKYPKRDASTFLRSSETGIVDQVMLSLNSDGNKFVKIRMRSVRLPQIGDKFASRH 945
Query: 63 GQKGT 67
GQKGT
Sbjct: 946 GQKGT 950
>sp|Q54J75|RPB2_DICDI DNA-directed RNA polymerase II subunit rpb2 OS=Dictyostelium
discoideum GN=polr2b PE=3 SV=1
Length = 1170
Score = 99.0 bits (245), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 45/61 (73%), Positives = 56/61 (91%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+R +KRD ST LR+SETGIVDQV+LT + +G+KFCK+RVRS+R+PQIGDKF+SRHGQKG
Sbjct: 880 TRRHTKRDSSTALRSSETGIVDQVILTTSGEGFKFCKVRVRSMRVPQIGDKFSSRHGQKG 939
Query: 67 T 67
T
Sbjct: 940 T 940
>sp|Q42877|RPB2_SOLLC DNA-directed RNA polymerase II subunit RPB2 OS=Solanum lycopersicum
GN=RPB2 PE=2 SV=1
Length = 1191
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 44/64 (68%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G R++++D ST LR+SETG+VDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 886 QGQASRYTRKDHSTSLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 945
Query: 64 QKGT 67
QKGT
Sbjct: 946 QKGT 949
>sp|P38420|RPB2_ARATH DNA-directed RNA polymerase II subunit RPB2 OS=Arabidopsis thaliana
GN=RPB135 PE=2 SV=2
Length = 1188
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 44/64 (68%), Positives = 55/64 (85%)
Query: 4 EGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHG 63
+G + R+++RD S LR+SETG+VDQV+LT N DG +F K+RVRSVRIPQIGDKF+SRHG
Sbjct: 887 QGQSSRYTRRDHSISLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHG 946
Query: 64 QKGT 67
QKGT
Sbjct: 947 QKGT 950
>sp|P08518|RPB2_YEAST DNA-directed RNA polymerase II subunit RPB2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPB2 PE=1
SV=2
Length = 1224
Score = 91.7 bits (226), Expect = 1e-18, Method: Composition-based stats.
Identities = 43/61 (70%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T SKRD ST LR++E GIVDQV++T N DG KF K+RVR+ +IPQIGDKFASRHGQKG
Sbjct: 929 TAYHSKRDASTPLRSTENGIVDQVLVTTNQDGLKFVKVRVRTTKIPQIGDKFASRHGQKG 988
Query: 67 T 67
T
Sbjct: 989 T 989
>sp|Q6FLD5|RPB2_CANGA DNA-directed RNA polymerase II subunit RPB2 OS=Candida glabrata
(strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 /
NRRL Y-65) GN=RPB2 PE=3 SV=1
Length = 1223
Score = 91.7 bits (226), Expect = 1e-18, Method: Composition-based stats.
Identities = 42/61 (68%), Positives = 50/61 (81%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T SKRD ST LR++E GIVDQV++T N DG KF K+RVR+ ++PQIGDKFASRHGQKG
Sbjct: 928 TAYHSKRDASTPLRSTENGIVDQVLITTNQDGLKFVKVRVRTTKVPQIGDKFASRHGQKG 987
Query: 67 T 67
T
Sbjct: 988 T 988
>sp|Q02061|RPB2_SCHPO DNA-directed RNA polymerase II subunit RPB2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpb2 PE=1 SV=2
Length = 1210
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 43/61 (70%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST LR++E+GIVDQVM+T N +G KF K+R+RS RIPQIGDKFASRHGQKG
Sbjct: 918 TQLHAKRDVSTPLRSTESGIVDQVMVTTNQEGLKFVKVRMRSTRIPQIGDKFASRHGQKG 977
Query: 67 T 67
T
Sbjct: 978 T 978
>sp|A5DHT2|RPB2_PICGU DNA-directed RNA polymerase II subunit RPB2 OS=Meyerozyma
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 /
JCM 1539 / NBRC 10279 / NRRL Y-324) GN=RPB2 PE=3 SV=3
Length = 1236
Score = 90.1 bits (222), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 52/61 (85%)
Query: 7 TKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
T+ +KRD ST LR++E+GIVDQV+LT N DG KF K+R+R+ ++PQIGDKFASRHGQKG
Sbjct: 938 TQYHTKRDASTPLRSTESGIVDQVLLTTNGDGAKFVKVRMRTTKVPQIGDKFASRHGQKG 997
Query: 67 T 67
T
Sbjct: 998 T 998
>sp|Q753Q4|RPB2_ASHGO DNA-directed RNA polymerase II subunit RPB2 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=RPB2 PE=3 SV=1
Length = 1222
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 40/57 (70%), Positives = 49/57 (85%)
Query: 11 SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
SKRD ST LR++E GIVDQV++T N +G KF K+RVR+ ++PQIGDKFASRHGQKGT
Sbjct: 931 SKRDASTPLRSTENGIVDQVLITTNQEGLKFVKVRVRTTKVPQIGDKFASRHGQKGT 987
>sp|Q8SR75|RPB2_ENCCU DNA-directed RNA polymerase II subunit RPB2 OS=Encephalitozoon
cuniculi (strain GB-M1) GN=RPB2 PE=3 SV=1
Length = 1141
Score = 79.0 bits (193), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 38/58 (65%), Positives = 47/58 (81%), Gaps = 1/58 (1%)
Query: 10 FSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
+ +D ST +R +ETGIVD V++T N DGYKF K++VRS RIPQ+GDKFASRH QKGT
Sbjct: 857 YVYKDSSTAMRRTETGIVDTVIVT-NKDGYKFSKVKVRSGRIPQMGDKFASRHAQKGT 913
>sp|P11513|RPOB_SULAC DNA-directed RNA polymerase subunit B OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=rpoB PE=3 SV=2
Length = 1126
Score = 73.6 bits (179), Expect = 3e-13, Method: Composition-based stats.
Identities = 33/56 (58%), Positives = 43/56 (76%)
Query: 11 SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
+KRD S R+ E GIVD V++T ++G K K+RVR +RIP+IGDKFA+RHGQKG
Sbjct: 829 AKRDTSIVTRHGENGIVDLVLITETLEGNKLVKVRVRDLRIPEIGDKFATRHGQKG 884
>sp|O27124|RPOB1_METTH DNA-directed RNA polymerase subunit B' OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rpoB1 PE=3 SV=1
Length = 603
Score = 70.1 bits (170), Expect = 4e-12, Method: Composition-based stats.
Identities = 32/55 (58%), Positives = 41/55 (74%)
Query: 12 KRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
+R+ S +R+ E GIVD V+LT V+G + KIRVR R P++GDKFASRHGQKG
Sbjct: 317 RRETSVTVRHGEKGIVDAVLLTETVEGSRLAKIRVREQRQPELGDKFASRHGQKG 371
>sp|P31814|RPOB_THECE DNA-directed RNA polymerase subunit B OS=Thermococcus celer GN=rpoB
PE=3 SV=1
Length = 1122
Score = 68.9 bits (167), Expect = 8e-12, Method: Composition-based stats.
Identities = 31/55 (56%), Positives = 41/55 (74%)
Query: 12 KRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
+R+ S +R SETG+VD+V++T DG K K+ R +RIP+ GDKFASRHGQKG
Sbjct: 835 RRETSLTVRPSETGVVDKVIITETGDGTKLVKVTTRDLRIPEFGDKFASRHGQKG 889
>sp|Q60181|RPOB1_METJA DNA-directed RNA polymerase subunit B' OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=rpoB1 PE=3 SV=1
Length = 636
Score = 68.6 bits (166), Expect = 1e-11, Method: Composition-based stats.
Identities = 29/55 (52%), Positives = 42/55 (76%)
Query: 12 KRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
+RD S +R+ E G +D+V+LT +G + K++VR +RIP++GDKFASRHGQKG
Sbjct: 322 RRDSSVVVRHGEEGYIDKVILTETKEGNRLVKVKVRDLRIPELGDKFASRHGQKG 376
>sp|O28392|RPOB1_ARCFU DNA-directed RNA polymerase subunit B' OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=rpoB1 PE=4 SV=1
Length = 604
Score = 67.4 bits (163), Expect = 2e-11, Method: Composition-based stats.
Identities = 30/55 (54%), Positives = 41/55 (74%)
Query: 12 KRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
+R+ S +R++E G+VD V L + G K K+RVR +RIP++GDKFASRHGQKG
Sbjct: 317 RRETSVTMRSNEKGVVDAVFLMQSEGGSKLAKVRVRDLRIPELGDKFASRHGQKG 371
>sp|P41557|RPOB1_METVS DNA-directed RNA polymerase subunit B' OS=Methanococcus vannielii
(strain SB / ATCC 35089 / DSM 1224) GN=rpoB1 PE=3 SV=2
Length = 611
Score = 66.6 bits (161), Expect = 5e-11, Method: Composition-based stats.
Identities = 29/55 (52%), Positives = 41/55 (74%)
Query: 12 KRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
+RD S +R+ E G+VD V+L+ +G + K+RVR +R+P+ GDKFASRHGQKG
Sbjct: 318 RRDTSVTIRHGEEGVVDLVILSETKEGNRLGKVRVRDLRVPEFGDKFASRHGQKG 372
>sp|P09845|RPOB1_METTW DNA-directed RNA polymerase subunit B' OS=Methanothermobacter
thermoautotrophicus (strain Winter) GN=rpoB1 PE=3 SV=2
Length = 604
Score = 65.9 bits (159), Expect = 7e-11, Method: Composition-based stats.
Identities = 33/56 (58%), Positives = 41/56 (73%), Gaps = 1/56 (1%)
Query: 12 KRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQ-IGDKFASRHGQKG 66
+R+ S +R+ E GIVD V+LT V+G + KIRVR R P+ IGDKFASRHGQKG
Sbjct: 317 RRETSVTVRHGEEGIVDAVLLTETVEGSRLAKIRVREQRQPEFIGDKFASRHGQKG 372
>sp|Q03587|RPOB_THEAC DNA-directed RNA polymerase subunit B OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=rpoB PE=3 SV=1
Length = 1195
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 41/56 (73%)
Query: 12 KRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
+R+ S +R +E+G VD V LT++ + KI+VRS RIP++GDKFASRHGQKG
Sbjct: 906 RRESSVTMRPNESGYVDNVFLTVSESNSRVVKIKVRSERIPELGDKFASRHGQKGV 961
>sp|P0CX03|RPOB1_HALSA DNA-directed RNA polymerase subunit B' OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=rpoB1 PE=3
SV=1
Length = 608
Score = 64.7 bits (156), Expect = 2e-10, Method: Composition-based stats.
Identities = 30/55 (54%), Positives = 38/55 (69%)
Query: 12 KRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
+R+ S +R+ E G+VD V L DG K K+ VR RIP++GDKFASRHGQKG
Sbjct: 321 RRETSVTMRSGEDGVVDTVTLMEGEDGSKLAKVSVRDERIPELGDKFASRHGQKG 375
>sp|B0R8D5|RPOB1_HALS3 DNA-directed RNA polymerase subunit B' OS=Halobacterium salinarum
(strain ATCC 29341 / DSM 671 / R1) GN=rpoB1 PE=1 SV=1
Length = 608
Score = 64.7 bits (156), Expect = 2e-10, Method: Composition-based stats.
Identities = 30/55 (54%), Positives = 38/55 (69%)
Query: 12 KRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
+R+ S +R+ E G+VD V L DG K K+ VR RIP++GDKFASRHGQKG
Sbjct: 321 RRETSVTMRSGEDGVVDTVTLMEGEDGSKLAKVSVRDERIPELGDKFASRHGQKG 375
>sp|Q7T6X7|RPO2_MIMIV DNA-directed RNA polymerase subunit 2 OS=Acanthamoeba polyphaga
mimivirus GN=RPO2 PE=1 SV=2
Length = 1196
Score = 62.4 bits (150), Expect = 8e-10, Method: Composition-based stats.
Identities = 28/55 (50%), Positives = 39/55 (70%)
Query: 13 RDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
+D S+ ++ G VD+V+ +N DGY K+R+RS RIP +GDKF+SR GQKGT
Sbjct: 904 KDASSIYKSLIPGAVDKVITEVNNDGYPIIKMRIRSERIPNVGDKFSSRAGQKGT 958
>sp|Q6GZR3|RPB2_FRG3G Putative DNA-directed RNA polymerase II subunit RPB2 homolog OS=Frog
virus 3 (isolate Goorha) GN=FV3-062L PE=3 SV=1
Length = 1221
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 26/56 (46%), Positives = 39/56 (69%)
Query: 12 KRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
+RD S ++ SE G +D+V + ++ DG K K+R+R+ R P++GDKFAS QKGT
Sbjct: 945 RRDVSLTVKQSEEGYLDRVTVDVDSDGKKLVKVRLRTPRHPEMGDKFASFTAQKGT 1000
>sp|Q9LV32|RPD2B_ARATH DNA-directed RNA polymerase D subunit 2b OS=Arabidopsis thaliana
GN=NRPD2b PE=2 SV=1
Length = 1119
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 38/57 (66%)
Query: 11 SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
S D S L+++E GIV +V+L+ N +G F + +R VR P +GDKF+S HGQKG
Sbjct: 813 SGADHSIKLKHTERGIVQKVVLSSNDEGKNFAAVSLRQVRSPCLGDKFSSMHGQKGV 869
>sp|Q9LK40|RPD2A_ARATH DNA-directed RNA polymerase D subunit 2a OS=Arabidopsis thaliana
GN=NRPD2a PE=1 SV=1
Length = 1172
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 38/57 (66%)
Query: 11 SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
S D S L+++E GIV +V+L+ N +G F + +R VR P +GDKF+S HGQKG
Sbjct: 867 SGADHSIKLKHTERGIVQKVVLSSNDEGKNFAAVSLRQVRSPCLGDKFSSMHGQKGV 923
>sp|P22276|RPC2_YEAST DNA-directed RNA polymerase III subunit RPC2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RET1 PE=1
SV=2
Length = 1149
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 34/55 (61%)
Query: 13 RDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
R+ R E +DQVM++++ + K+ +R R P++GDKF+SRHGQKG
Sbjct: 867 REAPVIYRGPEPSHIDQVMMSVSDNDQALIKVLLRQNRRPELGDKFSSRHGQKGV 921
>sp|P25167|RPC2_DROME DNA-directed RNA polymerase III subunit RPC2 OS=Drosophila
melanogaster GN=RpIII128 PE=2 SV=2
Length = 1137
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 37/65 (56%)
Query: 3 LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
L+G + + + E +++VM++ N + KI +R RIP+IGDKF+SRH
Sbjct: 848 LQGQSAQVPYTAVPISYKGPEPSYIERVMVSANAEEDFLIKILLRQTRIPEIGDKFSSRH 907
Query: 63 GQKGT 67
GQKG
Sbjct: 908 GQKGV 912
>sp|Q10233|RPC2_SCHPO DNA-directed RNA polymerase III subunit RPC2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpc2 PE=2 SV=1
Length = 1165
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 29/44 (65%)
Query: 23 ETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
E G +D+VMLT K+ +R R P++GDKF+SRHGQKG
Sbjct: 893 EPGYIDKVMLTTTDSDQTLIKVLMRQTRRPELGDKFSSRHGQKG 936
>sp|Q9NW08|RPC2_HUMAN DNA-directed RNA polymerase III subunit RPC2 OS=Homo sapiens
GN=POLR3B PE=1 SV=2
Length = 1133
Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats.
Identities = 19/40 (47%), Positives = 29/40 (72%)
Query: 27 VDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
+++VM++ N + K+ +R R P+IGDKF+SRHGQKG
Sbjct: 866 IEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKG 905
>sp|P59470|RPC2_MOUSE DNA-directed RNA polymerase III subunit RPC2 OS=Mus musculus
GN=Polr3b PE=2 SV=2
Length = 1133
Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats.
Identities = 19/40 (47%), Positives = 29/40 (72%)
Query: 27 VDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKG 66
+++VM++ N + K+ +R R P+IGDKF+SRHGQKG
Sbjct: 866 IEKVMISSNAEDAFLIKMLLRQTRRPEIGDKFSSRHGQKG 905
>sp|Q54IZ9|RPC2_DICDI DNA-directed RNA polymerase III subunit rpc2 OS=Dictyostelium
discoideum GN=polr3b PE=3 SV=1
Length = 1608
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 29/43 (67%)
Query: 25 GIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
+D+V+LT D K+ +RS R P++GDKF+SRHGQKG
Sbjct: 1341 AFIDKVLLTSGDDEQLLIKMLMRSTRRPELGDKFSSRHGQKGV 1383
>sp|Q9P7X8|RPA2_SCHPO Probable DNA-directed RNA polymerase I subunit RPA2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rpa2 PE=3 SV=2
Length = 1174
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 36/63 (57%), Gaps = 6/63 (9%)
Query: 10 FSKRDGSTFLRN---SETGIVDQVMLTLNVDGYKFCK---IRVRSVRIPQIGDKFASRHG 63
+ + G F+ +E G VD+V L N G C+ +++R R P IGDKF+SRHG
Sbjct: 848 YDESTGQNFIETYHGTEPGFVDEVRLLGNDVGDSECQQIHVKLRITRSPIIGDKFSSRHG 907
Query: 64 QKG 66
QKG
Sbjct: 908 QKG 910
>sp|O54888|RPA2_RAT DNA-directed RNA polymerase I subunit RPA2 OS=Rattus norvegicus
GN=Polr1b PE=1 SV=1
Length = 1135
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 18 FLRNSETGIVDQVMLTLNVDG---YKFCKIRVRSVRIPQIGDKFASRHGQKG 66
+ ++ E +VD + + N G +K + VR R P IGDKFASRHGQKG
Sbjct: 840 YYKSKENCVVDNIKVCSNDTGSGKFKCVCVTVRVPRNPTIGDKFASRHGQKG 891
>sp|Q5REE8|RPA2_PONAB DNA-directed RNA polymerase I subunit RPA2 OS=Pongo abelii
GN=POLR1B PE=2 SV=1
Length = 1136
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 18 FLRNSETGIVDQVMLTLNVDG---YKFCKIRVRSVRIPQIGDKFASRHGQKG 66
+ ++ E +VD + + N G +K I +R R P IGDKFASRHGQKG
Sbjct: 840 YYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKG 891
>sp|Q9H9Y6|RPA2_HUMAN DNA-directed RNA polymerase I subunit RPA2 OS=Homo sapiens
GN=POLR1B PE=1 SV=2
Length = 1135
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 18 FLRNSETGIVDQVMLTLNVDG---YKFCKIRVRSVRIPQIGDKFASRHGQKG 66
+ ++ E +VD + + N G +K I +R R P IGDKFASRHGQKG
Sbjct: 840 YYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKG 891
>sp|P70700|RPA2_MOUSE DNA-directed RNA polymerase I subunit RPA2 OS=Mus musculus
GN=Polr1b PE=2 SV=2
Length = 1135
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/52 (46%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 18 FLRNSETGIVDQVMLTLNVDG---YKFCKIRVRSVRIPQIGDKFASRHGQKG 66
+ ++ E +VD + + N G +K I VR R P IGDKFASRHGQKG
Sbjct: 840 YYKSKENCVVDNIKVCSNDMGSGKFKCICITVRIPRNPTIGDKFASRHGQKG 891
>sp|Q197F1|RPB2_IIV3 Probable DNA-directed RNA polymerase II subunit RPB2 homolog
OS=Invertebrate iridescent virus 3 GN=IIV3-009R PE=3
SV=1
Length = 1140
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 14 DGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
D S +++ E G VD+++ + +DG + K+ + +R P+IGDKF S QKGT
Sbjct: 861 DSSVIVQHGEEGYVDRIVDNV-IDGCRIVKVVIGQMRTPEIGDKFCSGMAQKGT 913
>sp|Q75DS1|RPA2_ASHGO DNA-directed RNA polymerase I subunit RPA2 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=RPA2 PE=3 SV=2
Length = 1196
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 4/51 (7%)
Query: 21 NSETGIVDQVML----TLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
+SE +++V L + ++ I+ R R+PQIGDKF+SRHGQKG
Sbjct: 869 SSEPAYIEEVTLIGDESNKFQELQYITIKYRIRRVPQIGDKFSSRHGQKGV 919
>sp|P22138|RPA2_YEAST DNA-directed RNA polymerase I subunit RPA135 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPA135 PE=1
SV=1
Length = 1203
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 6/52 (11%)
Query: 21 NSETGIVDQVMLTLNVDGYKFCKIRVRSV-----RIPQIGDKFASRHGQKGT 67
+SE +++V L + + KF +++ S+ R PQIGDKF+SRHGQKG
Sbjct: 876 SSEPAYIEEVNL-IGDESNKFQELQTVSIKYRIRRTPQIGDKFSSRHGQKGV 926
>sp|O74633|RPA2_NEUCR DNA-directed RNA polymerase I subunit RPA2 OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=acr-2 PE=1 SV=2
Length = 1234
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 6/60 (10%)
Query: 13 RDGSTFL---RNSETGIVDQVMLTLNVDG---YKFCKIRVRSVRIPQIGDKFASRHGQKG 66
RDG T ++SE V++V + +G + I++R R P IGDKF+SRHGQKG
Sbjct: 881 RDGVTHYERYKDSEDAFVEEVRVIGADNGTEPLQTVSIKLRIPRSPVIGDKFSSRHGQKG 940
>sp|P28365|RPA2_EUPOC DNA-directed RNA polymerase I subunit RPA2 OS=Euplotes
octocarinatus GN=RPA2 PE=3 SV=2
Length = 1166
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/22 (72%), Positives = 18/22 (81%)
Query: 46 VRSVRIPQIGDKFASRHGQKGT 67
+R RIP IGDKF+SRHGQKG
Sbjct: 882 IRYSRIPVIGDKFSSRHGQKGV 903
>sp|Q91F97|RPB2_IIV6 Probable DNA-directed RNA polymerase II subunit RPB2 homolog
OS=Invertebrate iridescent virus 6 GN=IIV6-428L PE=3
SV=1
Length = 1193
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 14 DGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRHGQKGT 67
D ST + SE G VD+++ T + G KI + + P+IGDKF S QKGT
Sbjct: 901 DHSTIVSISEEGKVDRIIRT-SKKGILMFKIVIAQQKRPEIGDKFCSAMAQKGT 953
>sp|Q54BM1|RPA2_DICDI DNA-directed RNA polymerase I subunit rpa2 OS=Dictyostelium
discoideum GN=polr1b PE=3 SV=1
Length = 1130
Score = 35.8 bits (81), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 15/23 (65%), Positives = 19/23 (82%)
Query: 44 IRVRSVRIPQIGDKFASRHGQKG 66
+++R R P IGDKF+SRHGQKG
Sbjct: 869 VKLRFNRNPVIGDKFSSRHGQKG 891
>sp|A0T0R1|RPOB_THAPS DNA-directed RNA polymerase subunit beta OS=Thalassiosira pseudonana
GN=rpoB PE=3 SV=1
Length = 1386
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 25/59 (42%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Query: 13 RDGSTFLRNSETGIVDQVMLTLNVD---GYKFCKIRV--RSVRIPQIGDKFASRHGQKG 66
RD S + E G V + LT N YKF KI++ +R Q+GDK A RHG KG
Sbjct: 1063 RDTSFRMPEGEYGRVIET-LTFNRRTKLAYKFEKIQIFIAQIRKIQVGDKIAGRHGNKG 1120
>sp|Q3ZJ93|RPOB_PSEAK DNA-directed RNA polymerase subunit beta OS=Pseudendoclonium akinetum
GN=rpoB PE=3 SV=1
Length = 2178
Score = 33.9 bits (76), Expect = 0.29, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 5 GTTKRFSKRDGSTF---LRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASR 61
G+ K S DG F L+ ++T ++ Q M + G + I + R QIGDK A R
Sbjct: 1872 GSQKENSNADGLQFYNPLKKTKTKVL-QPMEKTSFSGPQKVHIYLAEKRKLQIGDKIAGR 1930
Query: 62 HGQKG 66
HG KG
Sbjct: 1931 HGNKG 1935
>sp|P49466|RPOB_ODOSI DNA-directed RNA polymerase subunit beta OS=Odontella sinensis
GN=rpoB PE=3 SV=1
Length = 1379
Score = 33.9 bits (76), Expect = 0.33, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 13 RDGSTFLRNSETG-IVDQVMLTLNVD-GYKFCKIRV--RSVRIPQIGDKFASRHGQKG 66
RD S + + G +VD+V YKF KI+V +R ++GDK A RHG KG
Sbjct: 1056 RDTSFRMPKGKYGRVVDRVTFNRKTKLAYKFEKIQVFIAQIRKIKVGDKIAGRHGNKG 1113
>sp|Q6MJ09|RPOB_BDEBA DNA-directed RNA polymerase subunit beta OS=Bdellovibrio
bacteriovorus (strain ATCC 15356 / DSM 50701 / NCIB 9529
/ HD100) GN=rpoB PE=3 SV=2
Length = 1412
Score = 32.7 bits (73), Expect = 0.65, Method: Composition-based stats.
Identities = 15/27 (55%), Positives = 17/27 (62%)
Query: 40 KFCKIRVRSVRIPQIGDKFASRHGQKG 66
K K+ V R Q+GDKFA RHG KG
Sbjct: 1089 KMVKVYVAIKRKMQVGDKFAGRHGNKG 1115
>sp|P20028|RPA2_DROME DNA-directed RNA polymerase I subunit RPA2 OS=Drosophila
melanogaster GN=RpI135 PE=2 SV=2
Length = 1129
Score = 32.7 bits (73), Expect = 0.67, Method: Composition-based stats.
Identities = 16/27 (59%), Positives = 17/27 (62%)
Query: 40 KFCKIRVRSVRIPQIGDKFASRHGQKG 66
K I +R R IGDKFASR GQKG
Sbjct: 856 KMVAITLRVPRPATIGDKFASRAGQKG 882
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.137 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,934,992
Number of Sequences: 539616
Number of extensions: 661619
Number of successful extensions: 2047
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 101
Number of HSP's that attempted gapping in prelim test: 1893
Number of HSP's gapped (non-prelim): 253
length of query: 67
length of database: 191,569,459
effective HSP length: 39
effective length of query: 28
effective length of database: 170,524,435
effective search space: 4774684180
effective search space used: 4774684180
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)