RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7584
         (67 letters)



>d1twfb_ e.29.1.1 (B:) RBP2 {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 1207

 Score = 67.6 bits (164), Expect = 7e-16
 Identities = 44/65 (67%), Positives = 51/65 (78%)

Query: 3   LEGTTKRFSKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFASRH 62
           L   T   SKRD ST LR++E GIVDQV++T N DG KF K+RVR+ +IPQIGDKFASRH
Sbjct: 908 LGQRTAYHSKRDASTPLRSTENGIVDQVLVTTNQDGLKFVKVRVRTTKIPQIGDKFASRH 967

Query: 63  GQKGT 67
           GQKGT
Sbjct: 968 GQKGT 972


>d1smyc_ e.29.1.1 (C:) RNA-polymerase beta {Thermus thermophilus
           [TaxId: 274]}
          Length = 1119

 Score = 53.2 bits (127), Expect = 8e-11
 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 8/69 (11%)

Query: 7   TKRFSKRDGSTFLRNSETGIVDQV--------MLTLNVDGYKFCKIRVRSVRIPQIGDKF 58
            K    +D S  +   E GIV +          + L     +  ++ V   R  Q+GDK 
Sbjct: 780 EKARDVKDTSLRVPPGEGGIVVRTVRLRRGDPGVELKPGVREVVRVYVAQKRKLQVGDKL 839

Query: 59  ASRHGQKGT 67
           A+RHG KG 
Sbjct: 840 ANRHGNKGV 848


>d1k9aa2 d.93.1.1 (A:77-177) Carboxyl-terminal src kinase (csk)
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 101

 Score = 24.2 bits (52), Expect = 1.2
 Identities = 6/51 (11%), Positives = 15/51 (29%), Gaps = 1/51 (1%)

Query: 11 SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGD-KFAS 60
              G   +R S     D  +        +  +I   + ++    +  F +
Sbjct: 22 PPETGLFLVRESTNYPGDYTLCVSCEGKVEHYRIMYHASKLSIDEEVYFEN 72


>d2shpa2 d.93.1.1 (A:2-110) Tyrosine phoshatase shp-2 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 109

 Score = 23.8 bits (51), Expect = 1.5
 Identities = 12/49 (24%), Positives = 17/49 (34%), Gaps = 1/49 (2%)

Query: 13 RDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGD-KFAS 60
           DGS   R S++   D  +           KI+         G  KFA+
Sbjct: 24 VDGSFLARPSKSNPGDLTLSVRRNGAVTHIKIQNTGDYYDLYGGEKFAT 72


>d1r1qa_ d.93.1.1 (A:) GRB2-related adaptor protein 2 (MONA, GRID)
          {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 97

 Score = 22.9 bits (49), Expect = 2.7
 Identities = 7/38 (18%), Positives = 15/38 (39%)

Query: 11 SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRS 48
           K  G   +R S++   D  +   + D  +  K+   +
Sbjct: 24 GKDIGFFIIRASQSSPGDFSISVRHEDDVQHFKVMRDT 61


>d1jwoa_ d.93.1.1 (A:) Csk homologous kinase Chk {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 97

 Score = 23.0 bits (49), Expect = 2.9
 Identities = 6/35 (17%), Positives = 10/35 (28%)

Query: 11 SKRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIR 45
             DG   +R S     D V+           ++ 
Sbjct: 22 PPEDGLFLVRESARHPGDYVLCVSFGRDVIHYRVL 56


>d1mila_ d.93.1.1 (A:) Shc adaptor protein {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 104

 Score = 22.6 bits (48), Expect = 3.9
 Identities = 9/49 (18%), Positives = 16/49 (32%)

Query: 12 KRDGSTFLRNSETGIVDQVMLTLNVDGYKFCKIRVRSVRIPQIGDKFAS 60
          + +G   +R S T     V+  L     K   +      +     +F S
Sbjct: 24 QLNGDFLVRESTTTPGQYVLTGLQSGQPKHLLLVDPEGVVRTKDHRFES 72


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.137    0.398 

Gapped
Lambda     K      H
   0.267   0.0558    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 229,875
Number of extensions: 8040
Number of successful extensions: 31
Number of sequences better than 10.0: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 8
Length of query: 67
Length of database: 2,407,596
Length adjustment: 36
Effective length of query: 31
Effective length of database: 1,913,316
Effective search space: 59312796
Effective search space used: 59312796
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.3 bits)