BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy759
(230 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P18172|DHGL_DROPS Glucose dehydrogenase [acceptor] OS=Drosophila pseudoobscura
pseudoobscura GN=Gld PE=3 SV=4
Length = 625
Score = 163 bits (412), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 76/160 (47%), Positives = 104/160 (65%)
Query: 67 IWPMILYPRSRGKVLLKDSHPLTPPLIHANFFNDTRDLDVIVEGIKMAIELSKTKAFQSI 126
I+P +L P+SRG + L+ + PL PP I AN+ D RD+ +VEGIK AI LS+T +
Sbjct: 449 IFPAVLNPKSRGYITLRSADPLDPPRIFANYLTDERDVKTLVEGIKFAIRLSQTSPLKQY 508
Query: 127 GSTLHKAPIPGCSQYTFGSDAYWGCSVRHITTQLHHQCGTCKMGPRWDSSAVVDPQLKVY 186
G L K + GC + F SDAYW C+VR T +HQ G+CKMGP D AVV+ +L+V+
Sbjct: 509 GMRLDKTVVKGCESHAFASDAYWECAVRQNTGPENHQAGSCKMGPSHDPMAVVNHELRVH 568
Query: 187 GVDNLRVVDASIIPVIPGGHTVAVVYMIAEKASDMIKKTW 226
GV LRV+D SI+P + G+T A MIAEK + ++K+ W
Sbjct: 569 GVRGLRVMDTSIMPKVTAGNTHAPAVMIAEKGAYLLKRAW 608
>sp|P18173|DHGL_DROME Glucose dehydrogenase [acceptor] OS=Drosophila melanogaster GN=Gld
PE=3 SV=3
Length = 625
Score = 158 bits (400), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 75/163 (46%), Positives = 104/163 (63%)
Query: 64 SWSIWPMILYPRSRGKVLLKDSHPLTPPLIHANFFNDTRDLDVIVEGIKMAIELSKTKAF 123
S I+P +L PRSRG + L+ + PL PP I AN+ +D+ +VEGIK I LS+T
Sbjct: 446 SIQIFPAVLNPRSRGFIGLRSADPLEPPRIVANYLTHEQDVKTLVEGIKFVIRLSQTTPL 505
Query: 124 QSIGSTLHKAPIPGCSQYTFGSDAYWGCSVRHITTQLHHQCGTCKMGPRWDSSAVVDPQL 183
+ G L K + GC + FGSDAYW C+VR T +HQ G+CKMGP D AVV+ +L
Sbjct: 506 KQYGMRLDKTVVKGCEAHAFGSDAYWECAVRQNTGPENHQAGSCKMGPSHDPMAVVNHEL 565
Query: 184 KVYGVDNLRVVDASIIPVIPGGHTVAVVYMIAEKASDMIKKTW 226
+V+G+ LRV+D SI+P + G+T A MIAEK + ++K+ W
Sbjct: 566 RVHGIRGLRVMDTSIMPKVSSGNTHAPAVMIAEKGAYLLKRAW 608
>sp|Q00593|ALKJ_PSEOL Alcohol dehydrogenase [acceptor] OS=Pseudomonas oleovorans GN=alkJ
PE=1 SV=1
Length = 558
Score = 100 bits (250), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 107/209 (51%), Gaps = 28/209 (13%)
Query: 18 PD-DLPDIEFIFTAVSLASDGGVSLRQEMGITDHLYNSVYSSVDRKDSWSIWPMILYPRS 76
PD D P+++F F L D G + G T H+ + L P+S
Sbjct: 349 PDRDRPNLQFHFLPTYL-KDHGRKIAGGYGYTLHICD------------------LLPKS 389
Query: 77 RGKVLLKDSHPLTPPLIHANFFNDTRDLDVIVEGIKMAIELSKTKAFQSIGSTLHKAPIP 136
RG++ LK ++PL PPLI N+ +D D+ ++ GIK+ + + S+ +P
Sbjct: 390 RGRIGLKSANPLQPPLIDPNYLSDHEDIKTMIAGIKIGRAILQAP---SMAKHFKHEVVP 446
Query: 137 GCSQYTFGSDAYWGCSVRHITTQLHHQCGTCKMGPRWDSSAVVDPQLKVYGVDNLRVVDA 196
G + T D +R ++H GTC+MG D ++VVDP LK+ G+ N+RVVDA
Sbjct: 447 GQAVKT---DDEIIEDIRRRAETIYHPVGTCRMGK--DPASVVDPCLKIRGLANIRVVDA 501
Query: 197 SIIPVIPGGHTVAVVYMIAEKASDMIKKT 225
SI+P + G+T A MIAE A+++I +
Sbjct: 502 SIMPHLVAGNTNAPTIMIAENAAEIIMRN 530
>sp|Q47944|SDH_GLUOY L-sorbose 1-dehydrogenase OS=Gluconobacter oxydans PE=3 SV=1
Length = 531
Score = 96.7 bits (239), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 103/204 (50%), Gaps = 27/204 (13%)
Query: 21 LPDIEFIFTAVSLASDGGVSL-RQEMGITDHLYNSVYSSVDRKDSWSIWPMILYPRSRGK 79
+PD++F F A + A G S+ + GIT + Y +L P+SRG
Sbjct: 351 VPDLQFHFLAEAGAEAGVTSVPKGASGITLNSY------------------VLRPKSRGT 392
Query: 80 VLLKDSHPLTPPLIHANFFNDTRDLDVIVEGIKMAIELSKTKAFQSIGSTLHKAPIPGCS 139
V L+ + P P++ NF D DL+ EG++++ E+ + + + K
Sbjct: 393 VRLRSADPRVNPMVDPNFLGDPADLETSAEGVRLSYEMFSQPSLEK---HIRKTCFFSGK 449
Query: 140 QYTFGSDAYWGCSVRHITTQLHHQCGTCKMGPRWDSSAVVDPQLKVYGVDNLRVVDASII 199
Q T Y + H T H C TCKMG D +VVDP+LKV+G++ +R+ D+S++
Sbjct: 450 QPTM--QMYRDYAREHGRTSYHPTC-TCKMG--RDDMSVVDPRLKVHGLEGIRICDSSVM 504
Query: 200 PVIPGGHTVAVVYMIAEKASDMIK 223
P + G +T A MI+E+A+D I+
Sbjct: 505 PSLLGSNTNAATIMISERAADFIQ 528
>sp|Q9VGP2|NINAG_DROME Neither inactivation nor afterpotential protein G OS=Drosophila
melanogaster GN=ninaG PE=2 SV=2
Length = 581
Score = 96.3 bits (238), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 86/165 (52%), Gaps = 15/165 (9%)
Query: 72 LYPRSRGKVLLKDSHPLTPPLIHANFFNDTRDLDVIVEGIKMAIELSKTKAFQSIGSTLH 131
L P+SRG V L + H PLI N+ + D+ + I+ A+EL + AF ++ +H
Sbjct: 417 LQPKSRGSVGLLNRHMRRNPLIDPNYLSSEEDVACTISAIRSAVELVNSTAFAALHPRIH 476
Query: 132 KAPIPGCSQY---------TFGSDAYWGCSVRHITTQLHHQCGTCKMGPRWDSSAVVDPQ 182
+ CS + SD Y C +RH+ HH GTC +G +VVD Q
Sbjct: 477 WPRVQECSNFGPFERDFFDNRPSDQYLECLMRHVGLGSHHPGGTCALG------SVVDSQ 530
Query: 183 LKVYGVDNLRVVDASIIPVIPGGHTVAVVYMIAEKASDMIKKTWL 227
L++ GV N+RVVDAS++P G+ +VV IA +A+ I K+ L
Sbjct: 531 LRLKGVSNVRVVDASVLPRPISGNPNSVVVAIALRAASWILKSEL 575
>sp|Q9WWW2|ALKJ_PSEPU Alcohol dehydrogenase [acceptor] OS=Pseudomonas putida GN=alkJ PE=3
SV=1
Length = 552
Score = 95.9 bits (237), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 87/151 (57%), Gaps = 8/151 (5%)
Query: 72 LYPRSRGKVLLKDSHPLTPPLIHANFFNDTRDLDVIVEGIKMAIELSKTKAFQSIGSTLH 131
L P+SRG++ LK ++P+ PLI N+ +D D+ ++ GIK+ + S+
Sbjct: 385 LLPKSRGRIGLKSANPMDDPLIDPNYLSDPEDIKTMIAGIKIGRAIFDAP---SMAKHFK 441
Query: 132 KAPIPGCSQYTFGSDAYWGCSVRHITTQLHHQCGTCKMGPRWDSSAVVDPQLKVYGVDNL 191
+ +PG + SD +R ++H GTC+MG D ++VVDP L+V G+ N+
Sbjct: 442 REIVPGPA---VTSDDEIVADIRSRAETIYHPVGTCRMGK--DPASVVDPCLQVRGLRNI 496
Query: 192 RVVDASIIPVIPGGHTVAVVYMIAEKASDMI 222
RVVDASI+P + G+T A MIAE A+++I
Sbjct: 497 RVVDASIMPNLVAGNTNAPTIMIAENAAEII 527
>sp|P64264|Y1310_MYCBO Uncharacterized GMC-type oxidoreductase Mb1310 OS=Mycobacterium
bovis (strain ATCC BAA-935 / AF2122/97) GN=Mb1310 PE=3
SV=1
Length = 528
Score = 92.0 bits (227), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 90/157 (57%), Gaps = 9/157 (5%)
Query: 69 PMILYPRSRGKVLLKDSHPLTPPLIHANFFNDTRDLD--VIVEGIKMAIELSKTKAFQSI 126
P+++ P+SRG++ L+ + P P+I + +D +D ++ G+++ +++ + + +
Sbjct: 378 PILVAPQSRGQITLRSADPHAKPVIEPRYLSDLGGVDRAAMMAGLRICARIAQARPLRDL 437
Query: 127 GSTLHKAPIPGCSQYTFGSDAYWGCSVRHITTQLHHQCGTCKMGPRWDSSAVVDPQLKVY 186
++ + T +A ++ + L+H GTC+MG D ++VVDPQL+V
Sbjct: 438 LGSIARP-----RNSTELDEATLELALATCSHTLYHPMGTCRMGS--DEASVVDPQLRVR 490
Query: 187 GVDNLRVVDASIIPVIPGGHTVAVVYMIAEKASDMIK 223
GVD LRV DAS++P GHT A +I EKA+D+I+
Sbjct: 491 GVDGLRVADASVMPSTVRGHTHAPSVLIGEKAADLIR 527
>sp|P64263|Y1279_MYCTU Uncharacterized GMC-type oxidoreductase Rv1279/MT1316
OS=Mycobacterium tuberculosis GN=Rv1279 PE=3 SV=1
Length = 528
Score = 92.0 bits (227), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 90/157 (57%), Gaps = 9/157 (5%)
Query: 69 PMILYPRSRGKVLLKDSHPLTPPLIHANFFNDTRDLD--VIVEGIKMAIELSKTKAFQSI 126
P+++ P+SRG++ L+ + P P+I + +D +D ++ G+++ +++ + + +
Sbjct: 378 PILVAPQSRGQITLRSADPHAKPVIEPRYLSDLGGVDRAAMMAGLRICARIAQARPLRDL 437
Query: 127 GSTLHKAPIPGCSQYTFGSDAYWGCSVRHITTQLHHQCGTCKMGPRWDSSAVVDPQLKVY 186
++ + T +A ++ + L+H GTC+MG D ++VVDPQL+V
Sbjct: 438 LGSIARP-----RNSTELDEATLELALATCSHTLYHPMGTCRMGS--DEASVVDPQLRVR 490
Query: 187 GVDNLRVVDASIIPVIPGGHTVAVVYMIAEKASDMIK 223
GVD LRV DAS++P GHT A +I EKA+D+I+
Sbjct: 491 GVDGLRVADASVMPSTVRGHTHAPSVLIGEKAADLIR 527
>sp|A6U6Y8|BETA_SINMW Choline dehydrogenase OS=Sinorhizobium medicae (strain WSM419)
GN=betA PE=3 SV=1
Length = 549
Score = 90.1 bits (222), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/204 (32%), Positives = 95/204 (46%), Gaps = 31/204 (15%)
Query: 22 PDIEFIFTAVSLASDGGVSLRQEMGITDHL-YNSVYSSVDRKDSWSIWPMILYPRSRGKV 80
PDI++ F V+++ DG + + G H+ YN +SRG V
Sbjct: 350 PDIQYHFLPVAISYDGKAAAKSH-GFQVHVGYN-------------------LSKSRGDV 389
Query: 81 LLKDSHPLTPPLIHANFFNDTRDLDVIVEGIKMAIELSKTKAFQSIGSTLHKAP--IPGC 138
L+ S P P+I N+ + D + +++ E+ KAF L++ P PG
Sbjct: 390 TLRSSDPKADPVIRFNYMSHPEDWEKFRHCVRLTREIFGQKAFD-----LYRGPEIQPGE 444
Query: 139 SQYTFGSDAYWGCSVRHITTQLHHQCGTCKMGPRWDSSAVVDPQLKVYGVDNLRVVDASI 198
T D +R +H CGTCKMG + D AVVDP+ +V GVD LRV D+SI
Sbjct: 445 KVRT---DEEIDAFLREHLESAYHPCGTCKMGAKDDPMAVVDPETRVIGVDGLRVADSSI 501
Query: 199 IPVIPGGHTVAVVYMIAEKASDMI 222
P I G+ A M EKA+D I
Sbjct: 502 FPHITYGNLNAPSIMTGEKAADHI 525
>sp|P54223|BETA_RHIME Choline dehydrogenase OS=Rhizobium meliloti (strain 1021) GN=betA
PE=3 SV=2
Length = 549
Score = 88.6 bits (218), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 66/204 (32%), Positives = 95/204 (46%), Gaps = 31/204 (15%)
Query: 22 PDIEFIFTAVSLASDGGVSLRQEMGITDHL-YNSVYSSVDRKDSWSIWPMILYPRSRGKV 80
PDI++ F V+++ DG + + G H+ YN +SRG V
Sbjct: 350 PDIQYHFLPVAISYDGKAAAKSH-GFQVHVGYN-------------------LSKSRGNV 389
Query: 81 LLKDSHPLTPPLIHANFFNDTRDLDVIVEGIKMAIELSKTKAFQSIGSTLHKAP--IPGC 138
L+ S P P+I N+ + D + +++ E+ KAF L++ P PG
Sbjct: 390 SLRSSDPKADPVIRFNYMSHPEDWEKFRHCVRLTREIFGQKAFD-----LYRGPEIQPGE 444
Query: 139 SQYTFGSDAYWGCSVRHITTQLHHQCGTCKMGPRWDSSAVVDPQLKVYGVDNLRVVDASI 198
T D +R +H CGTCKMG + D AVVDP+ +V GVD LRV D+SI
Sbjct: 445 KVQT---DEEIDGFLREHLESAYHPCGTCKMGAKDDPMAVVDPETRVIGVDGLRVADSSI 501
Query: 199 IPVIPGGHTVAVVYMIAEKASDMI 222
P I G+ A M EK++D I
Sbjct: 502 FPHITYGNLNAPSIMTGEKSADHI 525
>sp|B0CKN4|BETA_BRUSI Choline dehydrogenase OS=Brucella suis (strain ATCC 23445 / NCTC
10510) GN=betA PE=3 SV=1
Length = 549
Score = 87.4 bits (215), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 98/219 (44%), Gaps = 30/219 (13%)
Query: 5 EGLAYVNTKYNVFPDDLPDIEFIFTAVSLASDGGVSLRQEMGITDHLYNSVYSSVDRKDS 64
E A+V +K V + PDI++ F V++ DG + Q G H
Sbjct: 336 ESAAFVRSKAGV---EYPDIQYHFLPVAIRYDGKAAA-QSHGFQAH-------------- 377
Query: 65 WSIWPMILYPRSRGKVLLKDSHPLTPPLIHANFFNDTRDLDVIVEGIKMAIELSKTKAFQ 124
+ PM +SRG V L+ ++P P+I N+ + D +++ E+ AF
Sbjct: 378 --VGPM--RSKSRGSVTLRSANPREKPVIKFNYMSHEDDWADFRHCVRLTREIFGQAAFD 433
Query: 125 SI-GSTLHKAPIPGCSQYTFGSDAYWGCSVRHITTQLHHQCGTCKMGPRWDSSAVVDPQL 183
G+ + PG T D +R H CGTCKMG D AVVDP+
Sbjct: 434 PYRGAEIQ----PGAHVQT---DDEIDNFIREHVESAFHPCGTCKMGAVDDPMAVVDPEC 486
Query: 184 KVYGVDNLRVVDASIIPVIPGGHTVAVVYMIAEKASDMI 222
+V GV+ LRV D+SI P I G+ M+ EKASD I
Sbjct: 487 RVIGVEGLRVADSSIFPRITNGNLNGPSIMVGEKASDHI 525
>sp|A5VPA6|BETA_BRUO2 Choline dehydrogenase OS=Brucella ovis (strain ATCC 25840 / 63/290
/ NCTC 10512) GN=betA PE=3 SV=1
Length = 549
Score = 87.4 bits (215), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 98/219 (44%), Gaps = 30/219 (13%)
Query: 5 EGLAYVNTKYNVFPDDLPDIEFIFTAVSLASDGGVSLRQEMGITDHLYNSVYSSVDRKDS 64
E A+V +K V + PDI++ F V++ DG + Q G H
Sbjct: 336 ESAAFVRSKAGV---EYPDIQYHFLPVAIRYDGKAAA-QSHGFQAH-------------- 377
Query: 65 WSIWPMILYPRSRGKVLLKDSHPLTPPLIHANFFNDTRDLDVIVEGIKMAIELSKTKAFQ 124
+ PM +SRG V L+ ++P P+I N+ + D +++ E+ AF
Sbjct: 378 --VGPM--RSKSRGSVTLRSANPREKPVIKFNYMSHEDDWADFRHCVRLTREIFGQAAFD 433
Query: 125 SI-GSTLHKAPIPGCSQYTFGSDAYWGCSVRHITTQLHHQCGTCKMGPRWDSSAVVDPQL 183
G+ + PG T D +R H CGTCKMG D AVVDP+
Sbjct: 434 PYRGAEIQ----PGAHVQT---DDEIDNFIREHVESAFHPCGTCKMGAVDDPMAVVDPEC 486
Query: 184 KVYGVDNLRVVDASIIPVIPGGHTVAVVYMIAEKASDMI 222
+V GV+ LRV D+SI P I G+ M+ EKASD I
Sbjct: 487 RVIGVEGLRVADSSIFPRITNGNLNGPSIMVGEKASDHI 525
>sp|A9M9H8|BETA_BRUC2 Choline dehydrogenase OS=Brucella canis (strain ATCC 23365 / NCTC
10854) GN=betA PE=3 SV=1
Length = 549
Score = 87.4 bits (215), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 98/219 (44%), Gaps = 30/219 (13%)
Query: 5 EGLAYVNTKYNVFPDDLPDIEFIFTAVSLASDGGVSLRQEMGITDHLYNSVYSSVDRKDS 64
E A+V +K V + PDI++ F V++ DG + Q G H
Sbjct: 336 ESAAFVRSKAGV---EYPDIQYHFLPVAIRYDGKAAA-QSHGFQAH-------------- 377
Query: 65 WSIWPMILYPRSRGKVLLKDSHPLTPPLIHANFFNDTRDLDVIVEGIKMAIELSKTKAFQ 124
+ PM +SRG V L+ ++P P+I N+ + D +++ E+ AF
Sbjct: 378 --VGPM--RSKSRGSVTLRSANPREKPVIKFNYMSHEDDWADFRHCVRLTREIFGQAAFD 433
Query: 125 SI-GSTLHKAPIPGCSQYTFGSDAYWGCSVRHITTQLHHQCGTCKMGPRWDSSAVVDPQL 183
G+ + PG T D +R H CGTCKMG D AVVDP+
Sbjct: 434 PYRGAEIQ----PGAHVQT---DDEIDNFIREHVESAFHPCGTCKMGAVDDPMAVVDPEC 486
Query: 184 KVYGVDNLRVVDASIIPVIPGGHTVAVVYMIAEKASDMI 222
+V GV+ LRV D+SI P I G+ M+ EKASD I
Sbjct: 487 RVIGVEGLRVADSSIFPRITNGNLNGPSIMVGEKASDHI 525
>sp|Q8G1Z8|BETA_BRUSU Choline dehydrogenase OS=Brucella suis biovar 1 (strain 1330)
GN=betA PE=3 SV=1
Length = 549
Score = 87.4 bits (215), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 69/219 (31%), Positives = 98/219 (44%), Gaps = 30/219 (13%)
Query: 5 EGLAYVNTKYNVFPDDLPDIEFIFTAVSLASDGGVSLRQEMGITDHLYNSVYSSVDRKDS 64
E A+V +K V + PDI++ F V++ DG + Q G H
Sbjct: 336 ESAAFVRSKAGV---EYPDIQYHFLPVAIRYDGKAAA-QSHGFQAH-------------- 377
Query: 65 WSIWPMILYPRSRGKVLLKDSHPLTPPLIHANFFNDTRDLDVIVEGIKMAIELSKTKAFQ 124
+ PM +SRG V L+ ++P P+I N+ + D +++ E+ AF
Sbjct: 378 --VGPM--RSKSRGSVTLRSANPREKPVIKFNYMSHEDDWADFRHCVRLTREIFGQAAFD 433
Query: 125 SI-GSTLHKAPIPGCSQYTFGSDAYWGCSVRHITTQLHHQCGTCKMGPRWDSSAVVDPQL 183
G+ + PG T D +R H CGTCKMG D AVVDP+
Sbjct: 434 PYRGAEIQ----PGAHVQT---DDEIDNFIREHVESAFHPCGTCKMGAVDDPMAVVDPEC 486
Query: 184 KVYGVDNLRVVDASIIPVIPGGHTVAVVYMIAEKASDMI 222
+V GV+ LRV D+SI P I G+ M+ EKASD I
Sbjct: 487 RVIGVEGLRVADSSIFPRITNGNLNGPSIMVGEKASDHI 525
>sp|Q985M5|BETA_RHILO Choline dehydrogenase OS=Rhizobium loti (strain MAFF303099) GN=betA
PE=3 SV=1
Length = 550
Score = 87.0 bits (214), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/219 (31%), Positives = 97/219 (44%), Gaps = 30/219 (13%)
Query: 5 EGLAYVNTKYNVFPDDLPDIEFIFTAVSLASDGGVSLRQEMGITDHLYNSVYSSVDRKDS 64
E A+V ++ V D PDI++ F ++ DG + + G H
Sbjct: 337 EAAAFVRSRAGV---DYPDIQYHFIPAAVRYDGKAAAKSH-GFQAH-------------- 378
Query: 65 WSIWPMILYPRSRGKVLLKDSHPLTPPLIHANFFNDTRDLDVIVEGIKMAIELSKTKAFQ 124
+ PM +SRG V L+ P P+I N+ + D I++ E+ AF
Sbjct: 379 --VGPM--RSKSRGSVTLRSPDPKAKPVIRFNYMSHPDDWTEFRHCIRLTREIFGQSAFD 434
Query: 125 SI-GSTLHKAPIPGCSQYTFGSDAYWGCSVRHITTQLHHQCGTCKMGPRWDSSAVVDPQL 183
+ G + PG SD +R +H CGTCKMG D ++VVDP+
Sbjct: 435 AFRGQEIS----PGSH---VQSDDDLDVFIRDHAESAYHPCGTCKMGRADDVTSVVDPEC 487
Query: 184 KVYGVDNLRVVDASIIPVIPGGHTVAVVYMIAEKASDMI 222
+V GVD LRV D+SI P + G+ A M EKASD I
Sbjct: 488 RVIGVDGLRVADSSIFPRVTNGNLNAPSIMTGEKASDHI 526
>sp|Q8UH55|BETA_AGRT5 Choline dehydrogenase OS=Agrobacterium tumefaciens (strain C58 /
ATCC 33970) GN=betA PE=3 SV=2
Length = 549
Score = 85.9 bits (211), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 98/210 (46%), Gaps = 30/210 (14%)
Query: 22 PDIEFIFTAVSLASDGGVSLRQEMGITDHL-YNSVYSSVDRKDSWSIWPMILYPRSRGKV 80
PDI++ F V+++ DG + + G H+ YN +SRG V
Sbjct: 350 PDIQYHFLPVAISYDGKAAAKSH-GFQAHVGYN-------------------LSKSRGNV 389
Query: 81 LLKDSHPLTPPLIHANFFNDTRDLDVIVEGIKMAIELSKTKAFQSI-GSTLHKAPIPGCS 139
L+ + P P+I N+ + D + +++ E+ KAF G + PG +
Sbjct: 390 TLRSADPHDDPVIRFNYMSHPEDWEKFRHCVRLTREIFGQKAFDDFRGPEIQ----PGEN 445
Query: 140 QYTFGSDAYWGCSVRHITTQLHHQCGTCKMGPRWDSSAVVDPQLKVYGVDNLRVVDASII 199
T D +R +H CGTC+MG R D AVVDP+ +V GV+ LRV D+SI
Sbjct: 446 IET---DEQIDAFLREHLESAYHPCGTCRMGDRNDPMAVVDPECRVIGVEGLRVADSSIF 502
Query: 200 PVIPGGHTVAVVYMIAEKASD-MIKKTWLP 228
P + G+ M EKA+D ++ KT LP
Sbjct: 503 PHVTYGNLNGPSIMTGEKAADHILGKTPLP 532
>sp|C3MIE4|BETA_RHISN Choline dehydrogenase OS=Rhizobium sp. (strain NGR234) GN=betA PE=3
SV=1
Length = 549
Score = 85.9 bits (211), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/203 (32%), Positives = 92/203 (45%), Gaps = 29/203 (14%)
Query: 22 PDIEFIFTAVSLASDGGVSLRQEMGITDHL-YNSVYSSVDRKDSWSIWPMILYPRSRGKV 80
PDI++ F V++ DG + G H+ YN +SRG V
Sbjct: 350 PDIQYHFLPVAIRYDGKAAANTH-GFQVHVGYN-------------------LSKSRGSV 389
Query: 81 LLKDSHPLTPPLIHANFFNDTRDLDVIVEGIKMAIELSKTKAF-QSIGSTLHKAPIPGCS 139
L+ S P P+I N+ + D + +++ E+ KAF Q G + PG
Sbjct: 390 TLRASDPKADPVIRFNYMSHPEDWEKFRHCVRLTREIFGQKAFDQYRGPEIQ----PGER 445
Query: 140 QYTFGSDAYWGCSVRHITTQLHHQCGTCKMGPRWDSSAVVDPQLKVYGVDNLRVVDASII 199
T D +R +H CGTCKMG + D AVVDP+ +V GVD LRV D+SI
Sbjct: 446 VQT---DEEIDAFLREHLESAYHPCGTCKMGSKDDPMAVVDPETRVIGVDGLRVADSSIF 502
Query: 200 PVIPGGHTVAVVYMIAEKASDMI 222
P + G+ A M EKA+D I
Sbjct: 503 PHVTYGNLNAPSIMTGEKAADHI 525
>sp|Q2KB43|BETA_RHIEC Choline dehydrogenase OS=Rhizobium etli (strain CFN 42 / ATCC
51251) GN=betA PE=3 SV=1
Length = 549
Score = 85.5 bits (210), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/204 (30%), Positives = 93/204 (45%), Gaps = 31/204 (15%)
Query: 22 PDIEFIFTAVSLASDGGVSLRQEMGITDHL-YNSVYSSVDRKDSWSIWPMILYPRSRGKV 80
PDI++ F V+++ DG + + G H+ YN +SRG V
Sbjct: 350 PDIQYHFLPVAISYDGKAAAKSH-GFQVHVGYN-------------------LSKSRGSV 389
Query: 81 LLKDSHPLTPPLIHANFFNDTRDLDVIVEGIKMAIELSKTKAFQSIGSTLHKAP--IPGC 138
L+ P P++ N+ + D + +++ E+ KAF + ++ P PG
Sbjct: 390 TLRSPDPKADPVLRFNYMSHPEDWEKFRHCVRLTREIFGQKAFDA-----YRGPEIQPGE 444
Query: 139 SQYTFGSDAYWGCSVRHITTQLHHQCGTCKMGPRWDSSAVVDPQLKVYGVDNLRVVDASI 198
SD +R +H CGTCKMG + D AVVDPQ +V GVD LRV D+SI
Sbjct: 445 G---VQSDEQIDSFLREHLESAYHPCGTCKMGAKDDPMAVVDPQTRVIGVDGLRVADSSI 501
Query: 199 IPVIPGGHTVAVVYMIAEKASDMI 222
P + G+ M EKA+D I
Sbjct: 502 FPHVTYGNLNGPSIMTGEKAADHI 525
>sp|Q8YFY2|BETA_BRUME Choline dehydrogenase OS=Brucella melitensis biotype 1 (strain 16M
/ ATCC 23456 / NCTC 10094) GN=betA PE=3 SV=2
Length = 549
Score = 84.7 bits (208), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 68/219 (31%), Positives = 97/219 (44%), Gaps = 30/219 (13%)
Query: 5 EGLAYVNTKYNVFPDDLPDIEFIFTAVSLASDGGVSLRQEMGITDHLYNSVYSSVDRKDS 64
E A+V +K V + PDI++ F V++ DG + Q G H
Sbjct: 336 ESAAFVRSKAGV---EYPDIQYHFLPVAIRYDGKAAA-QSHGFQAH-------------- 377
Query: 65 WSIWPMILYPRSRGKVLLKDSHPLTPPLIHANFFNDTRDLDVIVEGIKMAIELSKTKAFQ 124
+ PM +SRG V L+ ++P P+I N+ + D +++ E+ AF
Sbjct: 378 --VGPM--RSKSRGSVTLRSANPREKPVIKFNYMSHEDDWADFRHCVRLTREIFGQAAFD 433
Query: 125 SI-GSTLHKAPIPGCSQYTFGSDAYWGCSVRHITTQLHHQCGTCKMGPRWDSSAVVDPQL 183
G+ + PG T D +R H CGTCKMG D AVVDP+
Sbjct: 434 PYRGAEIQ----PGAHVQT---DDEIDNFIREHVESAFHPCGTCKMGAVDDPMAVVDPEC 486
Query: 184 KVYGVDNLRVVDASIIPVIPGGHTVAVVYMIAEKASDMI 222
+V GV+ LRV D+SI P I G+ M+ EKAS I
Sbjct: 487 RVIGVEGLRVADSSIFPRITNGNLNGPSIMVGEKASGHI 525
>sp|B9JBA2|BETA_AGRRK Choline dehydrogenase OS=Agrobacterium radiobacter (strain K84 /
ATCC BAA-868) GN=betA PE=3 SV=1
Length = 549
Score = 84.7 bits (208), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 90/203 (44%), Gaps = 29/203 (14%)
Query: 22 PDIEFIFTAVSLASDGGVSLRQEMGITDHL-YNSVYSSVDRKDSWSIWPMILYPRSRGKV 80
PDI++ F V+++ DG + + G H+ YN +SRG V
Sbjct: 350 PDIQYHFLPVAISYDGKAAAKSH-GFQAHVGYN-------------------LSKSRGAV 389
Query: 81 LLKDSHPLTPPLIHANFFNDTRDLDVIVEGIKMAIELSKTKAFQSI-GSTLHKAPIPGCS 139
L+ S P P+I N+ + D + +++ E+ KAF G + P
Sbjct: 390 TLRSSDPKADPVIRFNYMSHPEDWEKFRHCVRLTREIFGQKAFDDYRGPEIQPGP----- 444
Query: 140 QYTFGSDAYWGCSVRHITTQLHHQCGTCKMGPRWDSSAVVDPQLKVYGVDNLRVVDASII 199
+D +R +H CGTCKMG + D AVVDP +V GV+ LRV D+SI
Sbjct: 445 --DVQTDDQIDAFLREHLESAYHPCGTCKMGSKDDPMAVVDPDTRVIGVEGLRVADSSIF 502
Query: 200 PVIPGGHTVAVVYMIAEKASDMI 222
P + G+ M EKA+D I
Sbjct: 503 PSLTYGNLNGPSIMTGEKAADHI 525
>sp|Q9X2M2|BETA_STAXY Choline dehydrogenase OS=Staphylococcus xylosus GN=betA PE=3 SV=1
Length = 560
Score = 84.3 bits (207), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 101/221 (45%), Gaps = 31/221 (14%)
Query: 5 EGLAYVNTKYNVFPDDLPDIEFIFTAVSLASDGGVSLRQEMGITDHLYNSVYSSVDRKDS 64
EG +V + +V D P++ F F +++ DG +
Sbjct: 343 EGGGFVRSNDDV---DYPNLMFHFLPIAVRYDG-------------------TKAPAAHG 380
Query: 65 WSIWPMILYPRSRGKVLLKDSHPLTPPLIHANFFNDTRDLDVIVEGIKMAIELSKTKAFQ 124
+ + +Y SRG + +K P P N+ + D VE IK+A + K KA
Sbjct: 381 YQVHVGPMYSNSRGHLKIKSKDPFEKPEFVFNYLSTEEDKREWVEAIKVARNILKQKALD 440
Query: 125 SI-GSTLHKAPIPGCSQYTFGSDAYWGCSVRHITTQLHHQCGTCKMGPRWDSSAVVDPQ- 182
G + PG T W R T LH C +C+MGP D +VVDP+
Sbjct: 441 PFNGGEIS----PGPEVQTDEEIIEW--VKRDGETALHPSC-SCRMGPASDEMSVVDPET 493
Query: 183 LKVYGVDNLRVVDASIIPVIPGGHTVAVVYMIAEKASDMIK 223
KV+G++NLRVVDAS++P G+ + V M+AE+ASD+I+
Sbjct: 494 FKVHGMENLRVVDASVMPRTTNGNIHSPVLMMAERASDIIR 534
>sp|Q8BJ64|CHDH_MOUSE Choline dehydrogenase, mitochondrial OS=Mus musculus GN=Chdh PE=1
SV=1
Length = 596
Score = 84.3 bits (207), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 95/203 (46%), Gaps = 27/203 (13%)
Query: 22 PDIEFIFTAVSLASDGGVSLRQEMGITDHLYNSVYSSVDRKDSWSIWPMILYPRSRGKVL 81
PDI+F F + G +QE ++ + + S G +
Sbjct: 398 PDIQFHFLPSQVIDHGRKPTQQE-------------------AYQVHVGTMRATSVGWLK 438
Query: 82 LKDSHPLTPPLIHANFFNDTRDLDVIVEGIKMAIELSKTKAFQSI-GSTLHKAPIPGCSQ 140
L+ ++P P+IH N+ + D++ + ++++ E+ +A G L PG
Sbjct: 439 LRSANPRDHPVIHPNYLSTETDVEDFRQCVRLSREIFAQEALAPFRGKELQ----PGSH- 493
Query: 141 YTFGSDAYWGCSVRHITTQLHHQCGTCKMGPRWDSSAVVDPQLKVYGVDNLRVVDASIIP 200
SD VR +H TCKMG D +AVVD Q KV GV+NLRVVDASI+P
Sbjct: 494 --VQSDKEIDAFVRAKADSAYHPSCTCKMGRSSDPTAVVDAQTKVIGVENLRVVDASIMP 551
Query: 201 VIPGGHTVAVVYMIAEKASDMIK 223
+ G+ A MIAEKA+D+IK
Sbjct: 552 SVVSGNLNAPTVMIAEKAADIIK 574
>sp|B5ZUG2|BETA_RHILW Choline dehydrogenase OS=Rhizobium leguminosarum bv. trifolii
(strain WSM2304) GN=betA PE=3 SV=1
Length = 549
Score = 84.0 bits (206), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 92/203 (45%), Gaps = 29/203 (14%)
Query: 22 PDIEFIFTAVSLASDGGVSLRQEMGITDHL-YNSVYSSVDRKDSWSIWPMILYPRSRGKV 80
PDI++ F V+++ DG + + G H+ YN +SRG V
Sbjct: 350 PDIQYHFLPVAISYDGKAAAKSH-GFQVHVGYN-------------------LSKSRGSV 389
Query: 81 LLKDSHPLTPPLIHANFFNDTRDLDVIVEGIKMAIELSKTKAFQSI-GSTLHKAPIPGCS 139
L+ P P++ N+ + D + +++ EL AF G+ + PG S
Sbjct: 390 TLRSPDPKADPVLRFNYMSHAEDWEKFRHCVRLTRELFGQAAFDDYRGAEIQ----PGES 445
Query: 140 QYTFGSDAYWGCSVRHITTQLHHQCGTCKMGPRWDSSAVVDPQLKVYGVDNLRVVDASII 199
SD +R +H CGTCKMG + D AVVDPQ +V GV+ LRV D+SI
Sbjct: 446 ---VQSDEEIDAFLREHLESAYHPCGTCKMGAKDDPMAVVDPQTRVIGVEALRVADSSIF 502
Query: 200 PVIPGGHTVAVVYMIAEKASDMI 222
P + G+ M EKA+D I
Sbjct: 503 PHVTYGNLNGPSIMTGEKAADHI 525
>sp|Q7MF12|BETA_VIBVY Choline dehydrogenase OS=Vibrio vulnificus (strain YJ016) GN=betA
PE=3 SV=1
Length = 560
Score = 84.0 bits (206), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 107/257 (41%), Gaps = 52/257 (20%)
Query: 4 CEGLAYVNTKYNVFPDDLPDIEFIFTAVSLASDGGVSLRQEMGITDHLYNSVYSSVDRKD 63
C+ +N K + F L E+I T R+ +G T+H + + R
Sbjct: 305 CQKPITLNGKLDWFSKGLIGTEWILT------------RKGLGATNHFESCAFI---RSR 349
Query: 64 SWSIWPMILY----------------------------PRSRGKVLLKDSHPLTPPLIHA 95
+ WP I Y P SRG+V + ++PL P I
Sbjct: 350 AGLKWPNIQYHFLPAAMRYDGQAAFDGHGFQVHVGPNKPESRGRVEIVSANPLDKPKIQF 409
Query: 96 NFFNDTRDLDVIVEGIKMAIELSKTKAFQSI-GSTLHKAPIPGCSQYTFGSDAYWGCSVR 154
N+ + RD + I++ E+ A G + PG + T W V+
Sbjct: 410 NYLSTERDRQDWRDCIRLTREILAQPAMDEFRGEEIQ----PGINVATDAEIDQW---VK 462
Query: 155 HITTQLHHQCGTCKMGPRWDSSAVVDPQLKVYGVDNLRVVDASIIPVIPGGHTVAVVYMI 214
+H +CKMG D AV+D + +V G+ NLRVVD+S+ P IP G+ A M+
Sbjct: 463 ENVESAYHPSCSCKMGADDDPMAVLDEECRVRGITNLRVVDSSVFPTIPNGNLNAPTIMV 522
Query: 215 AEKASDMI-KKTWLPNQ 230
AE+A+D+I K LP Q
Sbjct: 523 AERAADLILHKQPLPPQ 539
>sp|B3PTE0|BETA_RHIE6 Choline dehydrogenase OS=Rhizobium etli (strain CIAT 652) GN=betA
PE=3 SV=1
Length = 549
Score = 83.6 bits (205), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/204 (30%), Positives = 92/204 (45%), Gaps = 31/204 (15%)
Query: 22 PDIEFIFTAVSLASDGGVSLRQEMGITDHL-YNSVYSSVDRKDSWSIWPMILYPRSRGKV 80
PDI++ F V+++ DG + + G H+ YN +SRG V
Sbjct: 350 PDIQYHFLPVAISYDGKAAAKSH-GFQVHVGYN-------------------LSKSRGSV 389
Query: 81 LLKDSHPLTPPLIHANFFNDTRDLDVIVEGIKMAIELSKTKAFQSIGSTLHKAP--IPGC 138
L+ P P++ N+ + D + +++ E+ AF + ++ P PG
Sbjct: 390 TLRSPDPKAEPVLRFNYMSHPEDWEKFRHCVRLTREIFGQTAFDA-----YRGPEIQPGE 444
Query: 139 SQYTFGSDAYWGCSVRHITTQLHHQCGTCKMGPRWDSSAVVDPQLKVYGVDNLRVVDASI 198
SD +R +H CGTCKMG + D AVVDPQ +V GVD LRV D+SI
Sbjct: 445 G---VQSDEQIDAFLREHLESAYHPCGTCKMGAKDDPMAVVDPQTRVIGVDGLRVADSSI 501
Query: 199 IPVIPGGHTVAVVYMIAEKASDMI 222
P + G+ M EKA+D I
Sbjct: 502 FPHVTYGNLNGPSIMTGEKAADHI 525
>sp|Q6UPE0|CHDH_RAT Choline dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Chdh
PE=1 SV=1
Length = 599
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 95/203 (46%), Gaps = 27/203 (13%)
Query: 22 PDIEFIFTAVSLASDGGVSLRQEMGITDHLYNSVYSSVDRKDSWSIWPMILYPRSRGKVL 81
PDI+F F + G +QE ++ + + S G +
Sbjct: 401 PDIQFHFLPSQVIDHGRKPTQQE-------------------AYQVHVGTMRATSVGWLK 441
Query: 82 LKDSHPLTPPLIHANFFNDTRDLDVIVEGIKMAIELSKTKAFQSI-GSTLHKAPIPGCSQ 140
L+ ++P P+I+ N+ + D++ + +K+ E+ +AF G L PG
Sbjct: 442 LRSTNPQDHPMINPNYLSTETDVEDFRQCVKLTREIFAQEAFAPFRGKELQ----PGSH- 496
Query: 141 YTFGSDAYWGCSVRHITTQLHHQCGTCKMGPRWDSSAVVDPQLKVYGVDNLRVVDASIIP 200
SD VR +H TCKMG D +AVVD Q +V GV+NLRV+DASI+P
Sbjct: 497 --VQSDKEIDAFVRAKADSAYHPSCTCKMGQPSDPTAVVDQQTRVIGVENLRVIDASIMP 554
Query: 201 VIPGGHTVAVVYMIAEKASDMIK 223
+ G+ A MIAEKA+D+IK
Sbjct: 555 SVVSGNLNAPTIMIAEKAADVIK 577
>sp|A8Z5A4|BETA_STAAT Choline dehydrogenase OS=Staphylococcus aureus (strain USA300 /
TCH1516) GN=betA PE=3 SV=1
Length = 569
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/221 (32%), Positives = 100/221 (45%), Gaps = 31/221 (14%)
Query: 5 EGLAYVNTKYNVFPDDLPDIEFIFTAVSLASDGGVSLRQEMGITDHLYNSVYSSVDRKDS 64
EG +V + V D P++ F F +++ DG + H Y
Sbjct: 346 EGGGFVRSNNEV---DYPNLMFHFLPIAVRYDG------QKAAVAHGYQV---------- 386
Query: 65 WSIWPMILYPRSRGKVLLKDSHPLTPPLIHANFFNDTRDLDVIVEGIKMAIELSKTKAFQ 124
+ PM Y SRG + +K P P I N+ + D VE I++A + KA
Sbjct: 387 -HVGPM--YSNSRGSLKIKSKDPFEKPSIRFNYLSTEEDKKEWVEAIRVARNILSQKAMD 443
Query: 125 SI-GSTLHKAPIPGCSQYTFGSDAYWGCSVRHITTQLHHQCGTCKMGPRWDSSAVVDP-Q 182
G + PG T W R T LH C + KMGP D AVVDP
Sbjct: 444 PFNGGEIS----PGPEVQTDEEILDW--VRRDGETALHPSC-SAKMGPASDPMAVVDPLT 496
Query: 183 LKVYGVDNLRVVDASIIPVIPGGHTVAVVYMIAEKASDMIK 223
+KV+G++NLRVVDAS +P G+ A V M+AEKA+D+I+
Sbjct: 497 MKVHGMENLRVVDASAMPRTTNGNIHAPVLMLAEKAADIIR 537
>sp|Q6GDJ1|BETA_STAAR Choline dehydrogenase OS=Staphylococcus aureus (strain MRSA252)
GN=betA PE=3 SV=1
Length = 569
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/221 (32%), Positives = 100/221 (45%), Gaps = 31/221 (14%)
Query: 5 EGLAYVNTKYNVFPDDLPDIEFIFTAVSLASDGGVSLRQEMGITDHLYNSVYSSVDRKDS 64
EG +V + V D P++ F F +++ DG + H Y
Sbjct: 346 EGGGFVRSNNEV---DYPNLMFHFLPIAVRYDG------QKAAVAHGYQV---------- 386
Query: 65 WSIWPMILYPRSRGKVLLKDSHPLTPPLIHANFFNDTRDLDVIVEGIKMAIELSKTKAFQ 124
+ PM Y SRG + +K P P I N+ + D VE I++A + KA
Sbjct: 387 -HVGPM--YSNSRGSLKIKSKDPFEKPSIRFNYLSTEEDKKEWVEAIRVARNILSQKAMD 443
Query: 125 SI-GSTLHKAPIPGCSQYTFGSDAYWGCSVRHITTQLHHQCGTCKMGPRWDSSAVVDP-Q 182
G + PG T W R T LH C + KMGP D AVVDP
Sbjct: 444 PFNGGEIS----PGPEVQTDEEILDW--VRRDGETALHPSC-SAKMGPASDPMAVVDPLT 496
Query: 183 LKVYGVDNLRVVDASIIPVIPGGHTVAVVYMIAEKASDMIK 223
+KV+G++NLRVVDAS +P G+ A V M+AEKA+D+I+
Sbjct: 497 MKVHGMENLRVVDASAMPRTTNGNIHAPVLMLAEKAADIIR 537
>sp|P60337|BETA_STAAN Choline dehydrogenase OS=Staphylococcus aureus (strain N315)
GN=betA PE=1 SV=1
Length = 569
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/221 (32%), Positives = 100/221 (45%), Gaps = 31/221 (14%)
Query: 5 EGLAYVNTKYNVFPDDLPDIEFIFTAVSLASDGGVSLRQEMGITDHLYNSVYSSVDRKDS 64
EG +V + V D P++ F F +++ DG + H Y
Sbjct: 346 EGGGFVRSNNEV---DYPNLMFHFLPIAVRYDG------QKAAVAHGYQV---------- 386
Query: 65 WSIWPMILYPRSRGKVLLKDSHPLTPPLIHANFFNDTRDLDVIVEGIKMAIELSKTKAFQ 124
+ PM Y SRG + +K P P I N+ + D VE I++A + KA
Sbjct: 387 -HVGPM--YSNSRGSLKIKSKDPFEKPSIRFNYLSTEEDKKEWVEAIRVARNILSQKAMD 443
Query: 125 SI-GSTLHKAPIPGCSQYTFGSDAYWGCSVRHITTQLHHQCGTCKMGPRWDSSAVVDP-Q 182
G + PG T W R T LH C + KMGP D AVVDP
Sbjct: 444 PFNGGEIS----PGPEVQTDEEILDW--VRRDGETALHPSC-SAKMGPASDPMAVVDPLT 496
Query: 183 LKVYGVDNLRVVDASIIPVIPGGHTVAVVYMIAEKASDMIK 223
+KV+G++NLRVVDAS +P G+ A V M+AEKA+D+I+
Sbjct: 497 MKVHGMENLRVVDASAMPRTTNGNIHAPVLMLAEKAADIIR 537
>sp|P60336|BETA_STAAM Choline dehydrogenase OS=Staphylococcus aureus (strain Mu50 / ATCC
700699) GN=betA PE=1 SV=1
Length = 569
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/221 (32%), Positives = 100/221 (45%), Gaps = 31/221 (14%)
Query: 5 EGLAYVNTKYNVFPDDLPDIEFIFTAVSLASDGGVSLRQEMGITDHLYNSVYSSVDRKDS 64
EG +V + V D P++ F F +++ DG + H Y
Sbjct: 346 EGGGFVRSNNEV---DYPNLMFHFLPIAVRYDG------QKAAVAHGYQV---------- 386
Query: 65 WSIWPMILYPRSRGKVLLKDSHPLTPPLIHANFFNDTRDLDVIVEGIKMAIELSKTKAFQ 124
+ PM Y SRG + +K P P I N+ + D VE I++A + KA
Sbjct: 387 -HVGPM--YSNSRGSLKIKSKDPFEKPSIRFNYLSTEEDKKEWVEAIRVARNILSQKAMD 443
Query: 125 SI-GSTLHKAPIPGCSQYTFGSDAYWGCSVRHITTQLHHQCGTCKMGPRWDSSAVVDP-Q 182
G + PG T W R T LH C + KMGP D AVVDP
Sbjct: 444 PFNGGEIS----PGPEVQTDEEILDW--VRRDGETALHPSC-SAKMGPASDPMAVVDPLT 496
Query: 183 LKVYGVDNLRVVDASIIPVIPGGHTVAVVYMIAEKASDMIK 223
+KV+G++NLRVVDAS +P G+ A V M+AEKA+D+I+
Sbjct: 497 MKVHGMENLRVVDASAMPRTTNGNIHAPVLMLAEKAADIIR 537
>sp|A6QK99|BETA_STAAE Choline dehydrogenase OS=Staphylococcus aureus (strain Newman)
GN=betA PE=3 SV=1
Length = 569
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/221 (32%), Positives = 100/221 (45%), Gaps = 31/221 (14%)
Query: 5 EGLAYVNTKYNVFPDDLPDIEFIFTAVSLASDGGVSLRQEMGITDHLYNSVYSSVDRKDS 64
EG +V + V D P++ F F +++ DG + H Y
Sbjct: 346 EGGGFVRSNNEV---DYPNLMFHFLPIAVRYDG------QKAAVAHGYQV---------- 386
Query: 65 WSIWPMILYPRSRGKVLLKDSHPLTPPLIHANFFNDTRDLDVIVEGIKMAIELSKTKAFQ 124
+ PM Y SRG + +K P P I N+ + D VE I++A + KA
Sbjct: 387 -HVGPM--YSNSRGSLKIKSKDPFEKPSIRFNYLSTEEDKKEWVEAIRVARNILSQKAMD 443
Query: 125 SI-GSTLHKAPIPGCSQYTFGSDAYWGCSVRHITTQLHHQCGTCKMGPRWDSSAVVDP-Q 182
G + PG T W R T LH C + KMGP D AVVDP
Sbjct: 444 PFNGGEIS----PGPEVQTDEEILDW--VRRDGETALHPSC-SAKMGPASDPMAVVDPLT 496
Query: 183 LKVYGVDNLRVVDASIIPVIPGGHTVAVVYMIAEKASDMIK 223
+KV+G++NLRVVDAS +P G+ A V M+AEKA+D+I+
Sbjct: 497 MKVHGMENLRVVDASAMPRTTNGNIHAPVLMLAEKAADIIR 537
>sp|Q5HCU1|BETA_STAAC Choline dehydrogenase OS=Staphylococcus aureus (strain COL) GN=betA
PE=3 SV=1
Length = 569
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/221 (32%), Positives = 100/221 (45%), Gaps = 31/221 (14%)
Query: 5 EGLAYVNTKYNVFPDDLPDIEFIFTAVSLASDGGVSLRQEMGITDHLYNSVYSSVDRKDS 64
EG +V + V D P++ F F +++ DG + H Y
Sbjct: 346 EGGGFVRSNNEV---DYPNLMFHFLPIAVRYDG------QKAAVAHGYQV---------- 386
Query: 65 WSIWPMILYPRSRGKVLLKDSHPLTPPLIHANFFNDTRDLDVIVEGIKMAIELSKTKAFQ 124
+ PM Y SRG + +K P P I N+ + D VE I++A + KA
Sbjct: 387 -HVGPM--YSNSRGSLKIKSKDPFEKPSIRFNYLSTEEDKKEWVEAIRVARNILSQKAMD 443
Query: 125 SI-GSTLHKAPIPGCSQYTFGSDAYWGCSVRHITTQLHHQCGTCKMGPRWDSSAVVDP-Q 182
G + PG T W R T LH C + KMGP D AVVDP
Sbjct: 444 PFNGGEIS----PGPEVQTDEEILDW--VRRDGETALHPSC-SAKMGPASDPMAVVDPLT 496
Query: 183 LKVYGVDNLRVVDASIIPVIPGGHTVAVVYMIAEKASDMIK 223
+KV+G++NLRVVDAS +P G+ A V M+AEKA+D+I+
Sbjct: 497 MKVHGMENLRVVDASAMPRTTNGNIHAPVLMLAEKAADIIR 537
>sp|Q2YWJ5|BETA_STAAB Choline dehydrogenase OS=Staphylococcus aureus (strain bovine RF122
/ ET3-1) GN=betA PE=3 SV=1
Length = 569
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/221 (32%), Positives = 100/221 (45%), Gaps = 31/221 (14%)
Query: 5 EGLAYVNTKYNVFPDDLPDIEFIFTAVSLASDGGVSLRQEMGITDHLYNSVYSSVDRKDS 64
EG +V + V D P++ F F +++ DG + H Y
Sbjct: 346 EGGGFVRSNNEV---DYPNLMFHFLPIAVRYDG------QKAAVAHGYQV---------- 386
Query: 65 WSIWPMILYPRSRGKVLLKDSHPLTPPLIHANFFNDTRDLDVIVEGIKMAIELSKTKAFQ 124
+ PM Y SRG + +K P P I N+ + D VE I++A + KA
Sbjct: 387 -HVGPM--YSNSRGSLKIKSKDPFEKPSIRFNYLSTEEDKKEWVEAIRVARNILSQKAMD 443
Query: 125 SI-GSTLHKAPIPGCSQYTFGSDAYWGCSVRHITTQLHHQCGTCKMGPRWDSSAVVDP-Q 182
G + PG T W R T LH C + KMGP D AVVDP
Sbjct: 444 PFNGGEIS----PGPEVQTDEEILDW--VRRDGETALHPSC-SAKMGPASDPMAVVDPLT 496
Query: 183 LKVYGVDNLRVVDASIIPVIPGGHTVAVVYMIAEKASDMIK 223
+KV+G++NLRVVDAS +P G+ A V M+AEKA+D+I+
Sbjct: 497 MKVHGMENLRVVDASAMPRTTNGNIHAPVLMLAEKAADIIR 537
>sp|A5IW37|BETA_STAA9 Choline dehydrogenase OS=Staphylococcus aureus (strain JH9) GN=betA
PE=3 SV=1
Length = 569
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/221 (32%), Positives = 100/221 (45%), Gaps = 31/221 (14%)
Query: 5 EGLAYVNTKYNVFPDDLPDIEFIFTAVSLASDGGVSLRQEMGITDHLYNSVYSSVDRKDS 64
EG +V + V D P++ F F +++ DG + H Y
Sbjct: 346 EGGGFVRSNNEV---DYPNLMFHFLPIAVRYDG------QKAAVAHGYQV---------- 386
Query: 65 WSIWPMILYPRSRGKVLLKDSHPLTPPLIHANFFNDTRDLDVIVEGIKMAIELSKTKAFQ 124
+ PM Y SRG + +K P P I N+ + D VE I++A + KA
Sbjct: 387 -HVGPM--YSNSRGSLKIKSKDPFEKPSIRFNYLSTEEDKKEWVEAIRVARNILSQKAMD 443
Query: 125 SI-GSTLHKAPIPGCSQYTFGSDAYWGCSVRHITTQLHHQCGTCKMGPRWDSSAVVDP-Q 182
G + PG T W R T LH C + KMGP D AVVDP
Sbjct: 444 PFNGGEIS----PGPEVQTDEEILDW--VRRDGETALHPSC-SAKMGPASDPMAVVDPLT 496
Query: 183 LKVYGVDNLRVVDASIIPVIPGGHTVAVVYMIAEKASDMIK 223
+KV+G++NLRVVDAS +P G+ A V M+AEKA+D+I+
Sbjct: 497 MKVHGMENLRVVDASAMPRTTNGNIHAPVLMLAEKAADIIR 537
>sp|Q2FV11|BETA_STAA8 Choline dehydrogenase OS=Staphylococcus aureus (strain NCTC 8325)
GN=betA PE=3 SV=1
Length = 569
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/221 (32%), Positives = 100/221 (45%), Gaps = 31/221 (14%)
Query: 5 EGLAYVNTKYNVFPDDLPDIEFIFTAVSLASDGGVSLRQEMGITDHLYNSVYSSVDRKDS 64
EG +V + V D P++ F F +++ DG + H Y
Sbjct: 346 EGGGFVRSNNEV---DYPNLMFHFLPIAVRYDG------QKAAVAHGYQV---------- 386
Query: 65 WSIWPMILYPRSRGKVLLKDSHPLTPPLIHANFFNDTRDLDVIVEGIKMAIELSKTKAFQ 124
+ PM Y SRG + +K P P I N+ + D VE I++A + KA
Sbjct: 387 -HVGPM--YSNSRGSLKIKSKDPFEKPSIRFNYLSTEEDKKEWVEAIRVARNILSQKAMD 443
Query: 125 SI-GSTLHKAPIPGCSQYTFGSDAYWGCSVRHITTQLHHQCGTCKMGPRWDSSAVVDP-Q 182
G + PG T W R T LH C + KMGP D AVVDP
Sbjct: 444 PFNGGEIS----PGPEVQTDEEILDW--VRRDGETALHPSC-SAKMGPASDPMAVVDPLT 496
Query: 183 LKVYGVDNLRVVDASIIPVIPGGHTVAVVYMIAEKASDMIK 223
+KV+G++NLRVVDAS +P G+ A V M+AEKA+D+I+
Sbjct: 497 MKVHGMENLRVVDASAMPRTTNGNIHAPVLMLAEKAADIIR 537
>sp|Q2FDP9|BETA_STAA3 Choline dehydrogenase OS=Staphylococcus aureus (strain USA300)
GN=betA PE=3 SV=1
Length = 569
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/221 (32%), Positives = 100/221 (45%), Gaps = 31/221 (14%)
Query: 5 EGLAYVNTKYNVFPDDLPDIEFIFTAVSLASDGGVSLRQEMGITDHLYNSVYSSVDRKDS 64
EG +V + V D P++ F F +++ DG + H Y
Sbjct: 346 EGGGFVRSNNEV---DYPNLMFHFLPIAVRYDG------QKAAVAHGYQV---------- 386
Query: 65 WSIWPMILYPRSRGKVLLKDSHPLTPPLIHANFFNDTRDLDVIVEGIKMAIELSKTKAFQ 124
+ PM Y SRG + +K P P I N+ + D VE I++A + KA
Sbjct: 387 -HVGPM--YSNSRGSLKIKSKDPFEKPSIRFNYLSTEEDKKEWVEAIRVARNILSQKAMD 443
Query: 125 SI-GSTLHKAPIPGCSQYTFGSDAYWGCSVRHITTQLHHQCGTCKMGPRWDSSAVVDP-Q 182
G + PG T W R T LH C + KMGP D AVVDP
Sbjct: 444 PFNGGEIS----PGPEVQTDEEILDW--VRRDGETALHPSC-SAKMGPASDPMAVVDPLT 496
Query: 183 LKVYGVDNLRVVDASIIPVIPGGHTVAVVYMIAEKASDMIK 223
+KV+G++NLRVVDAS +P G+ A V M+AEKA+D+I+
Sbjct: 497 MKVHGMENLRVVDASAMPRTTNGNIHAPVLMLAEKAADIIR 537
>sp|A6U4Z2|BETA_STAA2 Choline dehydrogenase OS=Staphylococcus aureus (strain JH1) GN=betA
PE=3 SV=1
Length = 569
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/221 (32%), Positives = 100/221 (45%), Gaps = 31/221 (14%)
Query: 5 EGLAYVNTKYNVFPDDLPDIEFIFTAVSLASDGGVSLRQEMGITDHLYNSVYSSVDRKDS 64
EG +V + V D P++ F F +++ DG + H Y
Sbjct: 346 EGGGFVRSNNEV---DYPNLMFHFLPIAVRYDG------QKAAVAHGYQV---------- 386
Query: 65 WSIWPMILYPRSRGKVLLKDSHPLTPPLIHANFFNDTRDLDVIVEGIKMAIELSKTKAFQ 124
+ PM Y SRG + +K P P I N+ + D VE I++A + KA
Sbjct: 387 -HVGPM--YSNSRGSLKIKSKDPFEKPSIRFNYLSTEEDKKEWVEAIRVARNILSQKAMD 443
Query: 125 SI-GSTLHKAPIPGCSQYTFGSDAYWGCSVRHITTQLHHQCGTCKMGPRWDSSAVVDP-Q 182
G + PG T W R T LH C + KMGP D AVVDP
Sbjct: 444 PFNGGEIS----PGPEVQTDEEILDW--VRRDGETALHPSC-SAKMGPASDPMAVVDPLT 496
Query: 183 LKVYGVDNLRVVDASIIPVIPGGHTVAVVYMIAEKASDMIK 223
+KV+G++NLRVVDAS +P G+ A V M+AEKA+D+I+
Sbjct: 497 MKVHGMENLRVVDASAMPRTTNGNIHAPVLMLAEKAADIIR 537
>sp|A7X6Z3|BETA_STAA1 Choline dehydrogenase OS=Staphylococcus aureus (strain Mu3 / ATCC
700698) GN=betA PE=3 SV=1
Length = 569
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/221 (32%), Positives = 100/221 (45%), Gaps = 31/221 (14%)
Query: 5 EGLAYVNTKYNVFPDDLPDIEFIFTAVSLASDGGVSLRQEMGITDHLYNSVYSSVDRKDS 64
EG +V + V D P++ F F +++ DG + H Y
Sbjct: 346 EGGGFVRSNNEV---DYPNLMFHFLPIAVRYDG------QKAAVAHGYQV---------- 386
Query: 65 WSIWPMILYPRSRGKVLLKDSHPLTPPLIHANFFNDTRDLDVIVEGIKMAIELSKTKAFQ 124
+ PM Y SRG + +K P P I N+ + D VE I++A + KA
Sbjct: 387 -HVGPM--YSNSRGSLKIKSKDPFEKPSIRFNYLSTEEDKKEWVEAIRVARNILSQKAMD 443
Query: 125 SI-GSTLHKAPIPGCSQYTFGSDAYWGCSVRHITTQLHHQCGTCKMGPRWDSSAVVDP-Q 182
G + PG T W R T LH C + KMGP D AVVDP
Sbjct: 444 PFNGGEIS----PGPEVQTDEEILDW--VRRDGETALHPSC-SAKMGPASDPMAVVDPLT 496
Query: 183 LKVYGVDNLRVVDASIIPVIPGGHTVAVVYMIAEKASDMIK 223
+KV+G++NLRVVDAS +P G+ A V M+AEKA+D+I+
Sbjct: 497 MKVHGMENLRVVDASAMPRTTNGNIHAPVLMLAEKAADIIR 537
>sp|Q8NUM0|BETA_STAAW Choline dehydrogenase OS=Staphylococcus aureus (strain MW2) GN=betA
PE=3 SV=1
Length = 569
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/221 (32%), Positives = 100/221 (45%), Gaps = 31/221 (14%)
Query: 5 EGLAYVNTKYNVFPDDLPDIEFIFTAVSLASDGGVSLRQEMGITDHLYNSVYSSVDRKDS 64
EG +V + V D P++ F F +++ DG + H Y
Sbjct: 346 EGGGFVRSNNEV---DYPNLMFHFLPIAVRYDG------QKAAVAHGYQV---------- 386
Query: 65 WSIWPMILYPRSRGKVLLKDSHPLTPPLIHANFFNDTRDLDVIVEGIKMAIELSKTKAFQ 124
+ PM Y SRG + +K P P I N+ + D VE I++A + KA
Sbjct: 387 -HVGPM--YSNSRGSLKIKSKDPFEKPSIRFNYLSTEEDKKEWVEAIRVARNILSQKAMD 443
Query: 125 SI-GSTLHKAPIPGCSQYTFGSDAYWGCSVRHITTQLHHQCGTCKMGPRWDSSAVVDP-Q 182
G + PG T W R T LH C + KMGP D AVVDP
Sbjct: 444 PFNGGEIS----PGPEVQTDEEILDW--VRRDGETALHPSC-SAKMGPASDPMAVVDPLT 496
Query: 183 LKVYGVDNLRVVDASIIPVIPGGHTVAVVYMIAEKASDMIK 223
+KV+G++NLRVVDAS +P G+ A V M+AEKA+D+I+
Sbjct: 497 MKVHGMENLRVVDASAMPRTTNGNIHAPVLMLAEKAADIIR 537
>sp|Q6G664|BETA_STAAS Choline dehydrogenase OS=Staphylococcus aureus (strain MSSA476)
GN=betA PE=3 SV=1
Length = 569
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/221 (32%), Positives = 100/221 (45%), Gaps = 31/221 (14%)
Query: 5 EGLAYVNTKYNVFPDDLPDIEFIFTAVSLASDGGVSLRQEMGITDHLYNSVYSSVDRKDS 64
EG +V + V D P++ F F +++ DG + H Y
Sbjct: 346 EGGGFVRSNNEV---DYPNLMFHFLPIAVRYDG------QKAAVAHGYQV---------- 386
Query: 65 WSIWPMILYPRSRGKVLLKDSHPLTPPLIHANFFNDTRDLDVIVEGIKMAIELSKTKAFQ 124
+ PM Y SRG + +K P P I N+ + D VE I++A + KA
Sbjct: 387 -HVGPM--YSNSRGSLKIKSKDPFEKPSIRFNYLSTEEDKKEWVEAIRVARNILSQKAMD 443
Query: 125 SI-GSTLHKAPIPGCSQYTFGSDAYWGCSVRHITTQLHHQCGTCKMGPRWDSSAVVDP-Q 182
G + PG T W R T LH C + KMGP D AVVDP
Sbjct: 444 PFNGGEIS----PGPEVQTDEEILDW--VRRDGETALHPSC-SAKMGPASDPMAVVDPLT 496
Query: 183 LKVYGVDNLRVVDASIIPVIPGGHTVAVVYMIAEKASDMIK 223
+KV+G++NLRVVDAS +P G+ A V M+AEKA+D+I+
Sbjct: 497 MKVHGMENLRVVDASAMPRTTNGNIHAPVLMLAEKAADIIR 537
>sp|Q1MJU4|BETA_RHIL3 Choline dehydrogenase OS=Rhizobium leguminosarum bv. viciae (strain
3841) GN=betA PE=3 SV=1
Length = 549
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 92/204 (45%), Gaps = 31/204 (15%)
Query: 22 PDIEFIFTAVSLASDGGVSLRQEMGITDHL-YNSVYSSVDRKDSWSIWPMILYPRSRGKV 80
PDI++ F V+++ DG + + G H+ YN +SRG V
Sbjct: 350 PDIQYHFLPVAISYDGKAAAKSH-GFQVHVGYN-------------------LSKSRGSV 389
Query: 81 LLKDSHPLTPPLIHANFFNDTRDLDVIVEGIKMAIELSKTKAFQSIGSTLHKAP--IPGC 138
L+ + P P++ N+ + D + +++ E+ AF ++ P PG
Sbjct: 390 SLRSADPKADPVLRFNYMSHAEDWEKFRHCVRLTREIFGQSAFHD-----YRGPEIQPGE 444
Query: 139 SQYTFGSDAYWGCSVRHITTQLHHQCGTCKMGPRWDSSAVVDPQLKVYGVDNLRVVDASI 198
SD +R +H CGTC+MG + D AVVDPQ +V G+D LRV D+SI
Sbjct: 445 G---VQSDEEIDAFLREHLESAYHPCGTCRMGAKDDPMAVVDPQTRVIGIDGLRVADSSI 501
Query: 199 IPVIPGGHTVAVVYMIAEKASDMI 222
P + G+ M EKA+D I
Sbjct: 502 FPHVTYGNLNGPSIMTGEKAADHI 525
>sp|Q8NE62|CHDH_HUMAN Choline dehydrogenase, mitochondrial OS=Homo sapiens GN=CHDH PE=2
SV=2
Length = 594
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 94/203 (46%), Gaps = 27/203 (13%)
Query: 22 PDIEFIFTAVSLASDGGVSLRQEMGITDHLYNSVYSSVDRKDSWSIWPMILYPRSRGKVL 81
PDI+F F + G V +QE ++ + + S G +
Sbjct: 396 PDIQFHFLPSQVIDHGRVPTQQE-------------------AYQVHVGPMRGTSVGWLK 436
Query: 82 LKDSHPLTPPLIHANFFNDTRDLDVIVEGIKMAIELSKTKAFQSI-GSTLHKAPIPGCSQ 140
L+ ++P P+I N+ + D++ +K+ E+ +A G L PG
Sbjct: 437 LRSANPQDHPVIQPNYLSTETDIEDFRLCVKLTREIFAQEALAPFRGKELQ----PGSH- 491
Query: 141 YTFGSDAYWGCSVRHITTQLHHQCGTCKMGPRWDSSAVVDPQLKVYGVDNLRVVDASIIP 200
SD VR +H TCKMG D +AVVDPQ +V GV+NLRVVDASI+P
Sbjct: 492 --IQSDKEIDAFVRAKADSAYHPSCTCKMGQPSDPTAVVDPQTRVLGVENLRVVDASIMP 549
Query: 201 VIPGGHTVAVVYMIAEKASDMIK 223
+ G+ A MIAEKA+D+IK
Sbjct: 550 SMVSGNLNAPTIMIAEKAADIIK 572
>sp|A6X2G7|BETA_OCHA4 Choline dehydrogenase OS=Ochrobactrum anthropi (strain ATCC 49188 /
DSM 6882 / NCTC 12168) GN=betA PE=3 SV=1
Length = 549
Score = 82.0 bits (201), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 97/219 (44%), Gaps = 30/219 (13%)
Query: 5 EGLAYVNTKYNVFPDDLPDIEFIFTAVSLASDGGVSLRQEMGITDHLYNSVYSSVDRKDS 64
E A++ +K V + PDI++ F V++ DG + Q G H
Sbjct: 336 ESAAFLRSKAGV---EYPDIQYHFLPVAIRYDGKAAA-QSHGFQAH-------------- 377
Query: 65 WSIWPMILYPRSRGKVLLKDSHPLTPPLIHANFFNDTRDLDVIVEGIKMAIELSKTKAFQ 124
+ PM +SRG V L+ ++P P+I N+ + D +++ E+ AF
Sbjct: 378 --VGPM--RSKSRGSVTLRSANPREKPVIKFNYMSHEDDWADFRHCVRLTREIFGQAAFN 433
Query: 125 SI-GSTLHKAPIPGCSQYTFGSDAYWGCSVRHITTQLHHQCGTCKMGPRWDSSAVVDPQL 183
G+ + PG SD ++ H CGTCKMG D AVVD +
Sbjct: 434 PYRGAEIQ----PGAH---VQSDDEIDNFIKEHVESAFHPCGTCKMGAVDDPMAVVDAEC 486
Query: 184 KVYGVDNLRVVDASIIPVIPGGHTVAVVYMIAEKASDMI 222
+V GV+ LRV D+SI P I G+ M+ EKASD I
Sbjct: 487 RVIGVEGLRVADSSIFPRITNGNLNGPSIMVGEKASDHI 525
>sp|Q4A0Q1|BETA_STAS1 Choline dehydrogenase OS=Staphylococcus saprophyticus subsp.
saprophyticus (strain ATCC 15305 / DSM 20229) GN=betA
PE=3 SV=1
Length = 560
Score = 81.6 bits (200), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 100/221 (45%), Gaps = 31/221 (14%)
Query: 5 EGLAYVNTKYNVFPDDLPDIEFIFTAVSLASDGGVSLRQEMGITDHLYNSVYSSVDRKDS 64
EG +V + +V D P++ F F +++ DG +
Sbjct: 343 EGGGFVRSNEDV---DYPNLMFHFLPIAVRYDG-------------------TKAPAAHG 380
Query: 65 WSIWPMILYPRSRGKVLLKDSHPLTPPLIHANFFNDTRDLDVIVEGIKMAIELSKTKAFQ 124
+ + +Y SRG + +K P P N+ + D VE IK+A + KA
Sbjct: 381 YQVHVGPMYSNSRGHLKIKSKDPFVKPDFVFNYLSTEEDKREWVEAIKVARNILGQKALD 440
Query: 125 SI-GSTLHKAPIPGCSQYTFGSDAYWGCSVRHITTQLHHQCGTCKMGPRWDSSAVVDPQ- 182
G + PG T W R T LH C +C+MGP D +VVDP+
Sbjct: 441 PYNGGEIS----PGPEVQTDEEIIEW--VKRDGETALHPSC-SCRMGPASDEMSVVDPET 493
Query: 183 LKVYGVDNLRVVDASIIPVIPGGHTVAVVYMIAEKASDMIK 223
KV+G++NLRVVDAS++P G+ + V M+AEKA+D+I+
Sbjct: 494 FKVHGMENLRVVDASVMPRTTNGNIHSPVLMMAEKAADIIR 534
>sp|Q8D3K2|BETA_VIBVU Choline dehydrogenase OS=Vibrio vulnificus (strain CMCP6) GN=betA
PE=3 SV=1
Length = 560
Score = 80.9 bits (198), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 106/257 (41%), Gaps = 52/257 (20%)
Query: 4 CEGLAYVNTKYNVFPDDLPDIEFIFTAVSLASDGGVSLRQEMGITDHLYNSVYSSVDRKD 63
C+ +N K + F L E+I T R+ +G T+H + + R
Sbjct: 305 CQKPITLNGKLDWFSKGLIGAEWILT------------RKGLGATNHFESCAFI---RSR 349
Query: 64 SWSIWPMILY----------------------------PRSRGKVLLKDSHPLTPPLIHA 95
+ WP I Y P SRG+V + ++P P I
Sbjct: 350 AGLKWPNIQYHFLPAAMRYDGQAAFDGHGFQVHVGPNKPESRGRVEIVSANPSDKPKIQF 409
Query: 96 NFFNDTRDLDVIVEGIKMAIELSKTKAFQSI-GSTLHKAPIPGCSQYTFGSDAYWGCSVR 154
N+ + RD + I++ E+ A G + PG + T W V+
Sbjct: 410 NYLSTERDRQDWRDCIRLTREILAQPAMDEFRGEEIQ----PGINVATDAEIDQW---VK 462
Query: 155 HITTQLHHQCGTCKMGPRWDSSAVVDPQLKVYGVDNLRVVDASIIPVIPGGHTVAVVYMI 214
+H +CKMG D AV+D + +V G+ NLRVVD+S+ P IP G+ A M+
Sbjct: 463 ENVESAYHPSCSCKMGADDDPMAVLDEECRVRGITNLRVVDSSVFPTIPNGNLNAPTIMV 522
Query: 215 AEKASDMI-KKTWLPNQ 230
AE+A+D+I K LP Q
Sbjct: 523 AERAADLILHKQPLPPQ 539
>sp|Q9HTJ2|BETA_PSEAE Choline dehydrogenase OS=Pseudomonas aeruginosa (strain ATCC 15692
/ PAO1 / 1C / PRS 101 / LMG 12228) GN=betA PE=3 SV=1
Length = 561
Score = 80.9 bits (198), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 98/204 (48%), Gaps = 31/204 (15%)
Query: 22 PDIEFIFTAVSLASDGGVSLRQEMGITDHLYNSVYSSVDRKDSWSIWPMILYPRSRGKVL 81
P+I+F F V++ +G + QE G H+ S+ S SRG++
Sbjct: 360 PNIQFHFLPVAINYNGSKGV-QEHGFQAHM-GSMRSP-----------------SRGRIH 400
Query: 82 LKDSHPLTPPLIHANFFNDTRDLDVIVEGIKMAIELSKTKAFQSI-GSTLHKAPIPGCSQ 140
LK P P I N+ + +D +GI++ E+ A G L PG S
Sbjct: 401 LKSRDPRQHPSILFNYMSHEQDWQEFRDGIRLTREIMNQPALDPYRGRELS----PGVS- 455
Query: 141 YTFGSDAYWGCSVR-HITTQLHHQCGTCKMGPRWDSSAVVDPQLKVYGVDNLRVVDASII 199
SDA +R H T H C +CKMG D AVVD Q +V+G++ LRVVDASI+
Sbjct: 456 --VQSDAELDEFIRNHAETAFHPSC-SCKMGS--DDMAVVDGQGRVHGMEGLRVVDASIM 510
Query: 200 PVIPGGHTVAVVYMIAEKASDMIK 223
P+I G+ A M+AEK +D I+
Sbjct: 511 PLIITGNLNATTIMMAEKIADRIR 534
>sp|B7V5R3|BETA_PSEA8 Choline dehydrogenase OS=Pseudomonas aeruginosa (strain LESB58)
GN=betA PE=3 SV=1
Length = 561
Score = 80.9 bits (198), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 98/204 (48%), Gaps = 31/204 (15%)
Query: 22 PDIEFIFTAVSLASDGGVSLRQEMGITDHLYNSVYSSVDRKDSWSIWPMILYPRSRGKVL 81
P+I+F F V++ +G + QE G H+ S+ S SRG++
Sbjct: 360 PNIQFHFLPVAINYNGSKGV-QEHGFQAHM-GSMRSP-----------------SRGRIH 400
Query: 82 LKDSHPLTPPLIHANFFNDTRDLDVIVEGIKMAIELSKTKAFQSI-GSTLHKAPIPGCSQ 140
LK P P I N+ + +D +GI++ E+ A G L PG S
Sbjct: 401 LKSRDPRQHPSILFNYMSHEQDWQEFRDGIRLTREIMNQPALDPYRGRELS----PGVS- 455
Query: 141 YTFGSDAYWGCSVR-HITTQLHHQCGTCKMGPRWDSSAVVDPQLKVYGVDNLRVVDASII 199
SDA +R H T H C +CKMG D AVVD Q +V+G++ LRVVDASI+
Sbjct: 456 --VQSDAELDEFIRNHAETAFHPSC-SCKMGS--DDMAVVDGQGRVHGMEGLRVVDASIM 510
Query: 200 PVIPGGHTVAVVYMIAEKASDMIK 223
P+I G+ A M+AEK +D I+
Sbjct: 511 PLIITGNLNATTIMMAEKIADRIR 534
>sp|Q8CMY2|BETA_STAES Choline dehydrogenase OS=Staphylococcus epidermidis (strain ATCC
12228) GN=betA PE=3 SV=1
Length = 572
Score = 80.9 bits (198), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 72/221 (32%), Positives = 102/221 (46%), Gaps = 31/221 (14%)
Query: 5 EGLAYVNTKYNVFPDDLPDIEFIFTAVSLASDGGVSLRQEMGITDHLYNSVYSSVDRKDS 64
EG +V + +V D P++ F F +++ DG + H Y
Sbjct: 348 EGGGFVRSNDDV---DYPNLMFHFLPIAVRYDG------QKAPVAHGYQV---------- 388
Query: 65 WSIWPMILYPRSRGKVLLKDSHPLTPPLIHANFFNDTRDLDVIVEGIKMAIELSKTKAFQ 124
+ PM Y SRG + +K P P I N+ + D VE I++A + K KA
Sbjct: 389 -HVGPM--YSNSRGSLKIKSKDPFEKPSIVFNYLSTKEDEREWVEAIRVARNILKQKAMD 445
Query: 125 SI-GSTLHKAPIPGCSQYTFGSDAYWGCSVRHITTQLHHQCGTCKMGPRWDSSAVVDP-Q 182
G + PG T W + T LH C + KMGP D AVVDP
Sbjct: 446 PFNGGEIS----PGPQVQTDEEILDW--VRKDGETALHPSC-SAKMGPASDPMAVVDPLT 498
Query: 183 LKVYGVDNLRVVDASIIPVIPGGHTVAVVYMIAEKASDMIK 223
+KV+G++NLRVVDAS +P G+ A V M+AEKA+D+I+
Sbjct: 499 MKVHGMENLRVVDASAMPRTTNGNIHAPVLMLAEKAADIIR 539
>sp|Q5HL11|BETA_STAEQ Choline dehydrogenase OS=Staphylococcus epidermidis (strain ATCC
35984 / RP62A) GN=betA PE=3 SV=1
Length = 572
Score = 80.5 bits (197), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 102/221 (46%), Gaps = 31/221 (14%)
Query: 5 EGLAYVNTKYNVFPDDLPDIEFIFTAVSLASDGGVSLRQEMGITDHLYNSVYSSVDRKDS 64
EG +V + +V D P++ F F +++ DG + H Y
Sbjct: 348 EGGGFVRSNDDV---DYPNLMFHFLPIAVRYDG------QKAPVAHGYQV---------- 388
Query: 65 WSIWPMILYPRSRGKVLLKDSHPLTPPLIHANFFNDTRDLDVIVEGIKMAIELSKTKAFQ 124
+ PM Y SRG + +K P P I N+ + D +E I++A + K KA
Sbjct: 389 -HVGPM--YSNSRGSLKIKSKDPFEKPSIVFNYLSTKEDEREWIEAIRVARNILKQKAMD 445
Query: 125 SI-GSTLHKAPIPGCSQYTFGSDAYWGCSVRHITTQLHHQCGTCKMGPRWDSSAVVDP-Q 182
G + PG T W + T LH C + KMGP D AVVDP
Sbjct: 446 PFNGGEIS----PGPQVQTDEEILDW--VRKDGETALHPSC-SAKMGPASDPMAVVDPLT 498
Query: 183 LKVYGVDNLRVVDASIIPVIPGGHTVAVVYMIAEKASDMIK 223
+KV+G++NLRVVDAS +P G+ A V M+AEKA+D+I+
Sbjct: 499 MKVHGMENLRVVDASAMPRTTNGNIHAPVLMLAEKAADIIR 539
>sp|Q1RFM3|BETA_ECOUT Choline dehydrogenase OS=Escherichia coli (strain UTI89 / UPEC)
GN=betA PE=3 SV=2
Length = 562
Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/155 (37%), Positives = 78/155 (50%), Gaps = 11/155 (7%)
Query: 76 SRGKVLLKDSHPLTPPLIHANFFNDTRDLDVIVEGIKMAIELSKTKAF-QSIGSTLHKAP 134
SRG V +K P P I N+ + +D + I++ E+ A Q G +
Sbjct: 393 SRGHVRIKSRDPHQHPAILFNYMSHEQDWQEFRDAIRITREIMHQPALDQYRGREIS--- 449
Query: 135 IPGCSQYTFGSDAYWGCSVRHITTQLHHQCGTCKMGPRWDSSAVVDPQLKVYGVDNLRVV 194
PG T D VR+ H CGTCKMG +D AVVD + +V+G++ LRVV
Sbjct: 450 -PGVECQT---DEQLDEFVRNHAETAFHPCGTCKMG--YDEMAVVDAEGRVHGLEGLRVV 503
Query: 195 DASIIPVIPGGHTVAVVYMIAEKASDMIK-KTWLP 228
DASI+P I G+ A MI EK +DMI+ K LP
Sbjct: 504 DASIMPQIITGNLNATTIMIGEKMADMIRGKDALP 538
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,679,311
Number of Sequences: 539616
Number of extensions: 3418511
Number of successful extensions: 6689
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 6435
Number of HSP's gapped (non-prelim): 164
length of query: 230
length of database: 191,569,459
effective HSP length: 114
effective length of query: 116
effective length of database: 130,053,235
effective search space: 15086175260
effective search space used: 15086175260
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)