Query psy759
Match_columns 230
No_of_seqs 182 out of 1552
Neff 8.0
Searched_HMMs 46136
Date Fri Aug 16 22:16:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy759.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/759hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1238|consensus 100.0 1.2E-59 2.6E-64 432.0 18.9 223 4-229 397-619 (623)
2 TIGR01810 betA choline dehydro 100.0 3.3E-42 7.2E-47 321.2 20.5 157 64-226 374-530 (532)
3 PF05199 GMC_oxred_C: GMC oxid 100.0 7.6E-43 1.7E-47 272.3 11.9 143 74-218 1-144 (144)
4 PRK02106 choline dehydrogenase 100.0 9.8E-41 2.1E-45 313.0 20.5 157 63-227 380-536 (560)
5 PLN02785 Protein HOTHEAD 100.0 2E-40 4.3E-45 311.4 15.5 152 66-227 416-581 (587)
6 COG2303 BetA Choline dehydroge 100.0 8.7E-36 1.9E-40 278.1 13.6 185 9-225 351-536 (542)
7 TIGR02462 pyranose_ox pyranose 99.9 2.2E-22 4.8E-27 187.1 13.1 131 73-226 411-543 (544)
8 COG1252 Ndh NADH dehydrogenase 82.6 2.8 6E-05 38.4 5.4 51 177-227 280-332 (405)
9 TIGR02733 desat_CrtD C-3',4' d 71.6 61 0.0013 29.9 11.2 72 143-225 420-491 (492)
10 TIGR03169 Nterm_to_SelD pyridi 71.2 9.8 0.00021 33.6 5.6 50 177-226 260-310 (364)
11 PTZ00318 NADH dehydrogenase-li 68.3 13 0.00029 33.8 5.9 50 178-227 298-348 (424)
12 KOG2495|consensus 66.1 6.2 0.00014 36.4 3.2 42 178-225 349-391 (491)
13 TIGR02734 crtI_fam phytoene de 64.7 51 0.0011 30.5 9.2 76 143-229 419-495 (502)
14 PF13807 GNVR: G-rich domain o 58.8 22 0.00047 24.5 4.3 35 187-221 37-71 (82)
15 PRK04176 ribulose-1,5-biphosph 47.1 45 0.00098 28.3 5.3 64 163-228 190-256 (257)
16 PRK08274 tricarballylate dehyd 39.8 65 0.0014 29.5 5.5 51 178-228 403-463 (466)
17 PRK07121 hypothetical protein; 34.4 92 0.002 28.9 5.6 49 177-225 432-490 (492)
18 PRK06134 putative FAD-binding 33.1 2.9E+02 0.0063 26.4 8.9 49 177-227 519-572 (581)
19 PRK12844 3-ketosteroid-delta-1 29.8 1.2E+02 0.0025 28.9 5.6 51 178-228 492-552 (557)
20 PRK12839 hypothetical protein; 29.8 1.1E+02 0.0024 29.2 5.4 49 179-227 511-569 (572)
21 TIGR02730 carot_isom carotene 28.9 92 0.002 28.9 4.6 37 186-226 456-492 (493)
22 PRK12845 3-ketosteroid-delta-1 26.7 1.4E+02 0.003 28.5 5.5 47 178-224 507-563 (564)
23 PRK12835 3-ketosteroid-delta-1 26.2 1.4E+02 0.0031 28.6 5.5 50 178-227 512-571 (584)
24 PRK12837 3-ketosteroid-delta-1 26.1 3.9E+02 0.0084 25.0 8.3 60 160-224 446-510 (513)
25 PRK12842 putative succinate de 24.8 1.8E+02 0.0038 27.8 5.8 48 177-226 515-567 (574)
26 PRK12843 putative FAD-binding 23.8 1.9E+02 0.0041 27.6 5.9 50 178-227 514-573 (578)
27 PRK06481 fumarate reductase fl 23.3 2E+02 0.0044 26.8 5.9 49 178-226 446-503 (506)
28 TIGR00292 thiazole biosynthesi 22.7 88 0.0019 26.5 3.0 62 164-227 190-254 (254)
No 1
>KOG1238|consensus
Probab=100.00 E-value=1.2e-59 Score=431.98 Aligned_cols=223 Identities=48% Similarity=0.849 Sum_probs=206.6
Q ss_pred eeEEEEEECCCCCCCCCCCCEEEEeeccccccCCcchhhhhccccccccccccccCCCCCeEEEEEeeeecCCCeEEEcc
Q psy759 4 CEGLAYVNTKYNVFPDDLPDIEFIFTAVSLASDGGVSLRQEMGITDHLYNSVYSSVDRKDSWSIWPMILYPRSRGKVLLK 83 (230)
Q Consensus 4 ~~~~~f~~s~~~~~~~~~pdiq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~P~SrG~V~L~ 83 (230)
.++++|+++.++..+.+|||+|+++.+.....+.+..+....| +++..++.+....+.|.++..+++|+|||+|+|+
T Consensus 397 ~e~~~f~~t~~~~~~~~~PD~~~~~~~~~~~~~~~~~~~~~~~---~~y~~~~~~~~~~~~~~i~~~~l~P~SrG~l~L~ 473 (623)
T KOG1238|consen 397 VETLGFINTVSSNLSLDWPDIELHFVAGSLSSDGLTALRKALG---EIYQALFGELTNSDSFVIFPKLLRPKSRGRLKLR 473 (623)
T ss_pred ceeeEEeccccccCcCCCCCeeEEeccccccccchhhhhhhcc---hHHHHhhhhhhcCceeEEeehhcCCCccceEEec
Confidence 6899999999887778999999999988887776555555554 6776677777777789999999999999999999
Q ss_pred CCCCCCCceeeeCCCCCHHHHHHHHHHHHHHHHHHccchhhhhccccccCCCCCCCCCCCCChhhhhhhhhccccccccc
Q psy759 84 DSHPLTPPLIHANFFNDTRDLDVIVEGIKMAIELSKTKAFQSIGSTLHKAPIPGCSQYTFGSDAYWGCSVRHITTQLHHQ 163 (230)
Q Consensus 84 s~dp~~~P~I~~~yl~~~~D~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~~~~~~~~H~ 163 (230)
|+||.+.|+|+||||++|+|++.+++|++.+.++.++++|++++.+++..+.|+|+.....+|++|+||+|+.+.|.||+
T Consensus 474 s~nP~~~P~I~~NY~~~p~Dv~~~vegi~~~~~l~~s~af~~~~~r~~~~~~~~c~~~~~~sd~yw~c~~R~~~~TiyH~ 553 (623)
T KOG1238|consen 474 STNPRDNPLITPNYFTHPEDVATLVEGIRTIIRLSNSKAFQRFGARLWKKPVPGCDLLAFLSDAYWECFCRHTVVTIYHY 553 (623)
T ss_pred CCCCCcCceeccCcCCCHHHHHHHHHHHHHHHHHHcCHHHHHhcchhccccCCCcccccCCCHHHHHHHHHhccceeecc
Confidence 99999999999999999999999999999999999999999999999988999998877899999999999999999999
Q ss_pred CcccccCCCCCCCCeeCCCCeEEccCCeEEecCcCCCCCCCCCcHHHHHHHHHHHHHHHHhhhCCC
Q psy759 164 CGTCKMGPRWDSSAVVDPQLKVYGVDNLRVVDASIIPVIPGGHTVAVVYMIAEKASDMIKKTWLPN 229 (230)
Q Consensus 164 ~GTc~MG~~~~~~~VVD~~lrV~Gv~nLrVvDaSv~P~~~~~n~~~~~~~iaer~a~~I~~~~~~~ 229 (230)
+|||+||+..|+++|||++||||||+|||||||||||.+|++|||||+||||||+||+||++|..+
T Consensus 554 ~GtckMGp~~D~~aVVD~~lrV~Gv~~LRVVDaSimP~~psgN~nA~v~MIgek~ad~Ik~~~~~~ 619 (623)
T KOG1238|consen 554 SGTCKMGPSSDPTAVVDPQLRVHGVRGLRVVDASIMPESPSGNPNAPVMMIGEKAADMIKEEWLAN 619 (623)
T ss_pred CCceEeCCccCCCcccCCcceeccccCceEeeccccCCCCCCCccHHHHHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999999999999999999999999999999999999999643
No 2
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=100.00 E-value=3.3e-42 Score=321.19 Aligned_cols=157 Identities=36% Similarity=0.544 Sum_probs=142.1
Q ss_pred eEEEEEeeeecCCCeEEEccCCCCCCCceeeeCCCCCHHHHHHHHHHHHHHHHHHccchhhhhccccccCCCCCCCCCCC
Q psy759 64 SWSIWPMILYPRSRGKVLLKDSHPLTPPLIHANFFNDTRDLDVIVEGIKMAIELSKTKAFQSIGSTLHKAPIPGCSQYTF 143 (230)
Q Consensus 64 ~~~~~~~l~~P~SrG~V~L~s~dp~~~P~I~~~yl~~~~D~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~p~~~~~~~ 143 (230)
.+++.+.+++|.|||+|+|+++||++.|.|++||++++.|++.++++++++++++++.+++.+...+. .|+. ..
T Consensus 374 ~~~~~~~~~~P~srG~V~L~s~dp~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~---~p~~---~~ 447 (532)
T TIGR01810 374 GFQVHVGPMYSNSRGHVKIKSKDPFEKPEIVFNYMSHEEDWREFREAIRVTREILKQKALDPYRGGEI---SPGP---EV 447 (532)
T ss_pred cEEEEEeecCCCCceEEEecCCCCccCceeccccCCCHHHHHHHHHHHHHHHHHHcCcchhhcccccc---CCCC---CC
Confidence 46777788999999999999999999999999999999999999999999999999988887654332 3433 25
Q ss_pred CChhhhhhhhhcccccccccCcccccCCCCCCCCeeCCCCeEEccCCeEEecCcCCCCCCCCCcHHHHHHHHHHHHHHHH
Q psy759 144 GSDAYWGCSVRHITTQLHHQCGTCKMGPRWDSSAVVDPQLKVYGVDNLRVVDASIIPVIPGGHTVAVVYMIAEKASDMIK 223 (230)
Q Consensus 144 ~~~~~~~~~i~~~~~~~~H~~GTc~MG~~~~~~~VVD~~lrV~Gv~nLrVvDaSv~P~~~~~n~~~~~~~iaer~a~~I~ 223 (230)
.+|++|++|+|+...+.+|++||||||+++++++|||++||||||+|||||||||||.+|++||++|+||||||+||+|+
T Consensus 448 ~~d~~~~~~ir~~~~~~~H~~GTcrMG~~~~~~~VVD~~~rV~Gv~nLrVvDaSv~P~~~~~n~~~t~~aiaeraAd~I~ 527 (532)
T TIGR01810 448 QTDEEIDEFVRRHGETALHPCGTCKMGPASDEMSVVDPETRVHGMEGLRVVDASIMPRITNGNLNAPVIMMGEKAADIIR 527 (532)
T ss_pred CCHHHHHHHHhhhcccccccccceeCCCcccCCCccCCCCeEeccCCcEEeeeccCCCCCCCccHHHHHHHHHHHHHHHh
Confidence 78999999999999999999999999985567899999999999999999999999999999999999999999999999
Q ss_pred hhh
Q psy759 224 KTW 226 (230)
Q Consensus 224 ~~~ 226 (230)
++.
T Consensus 528 ~~~ 530 (532)
T TIGR01810 528 GKK 530 (532)
T ss_pred ccC
Confidence 753
No 3
>PF05199 GMC_oxred_C: GMC oxidoreductase; InterPro: IPR007867 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. The function of this C-terminal conserved domain is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0055114 oxidation-reduction process; PDB: 3BG7_F 2IGM_D 3BLY_A 3BG6_H 3LSK_A 2IGO_A 3K4B_A 3K4L_B 2IGN_B 3K4M_H ....
Probab=100.00 E-value=7.6e-43 Score=272.32 Aligned_cols=143 Identities=42% Similarity=0.740 Sum_probs=117.6
Q ss_pred cCCCeEEEccCCCCCCCceeeeCCCCCHHHHHHHHHHHHHHHHHHccchhhhhcccccc-CCCCCCCCCCCCChhhhhhh
Q psy759 74 PRSRGKVLLKDSHPLTPPLIHANFFNDTRDLDVIVEGIKMAIELSKTKAFQSIGSTLHK-APIPGCSQYTFGSDAYWGCS 152 (230)
Q Consensus 74 P~SrG~V~L~s~dp~~~P~I~~~yl~~~~D~~~~~~g~~~~~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~ 152 (230)
|+|||+|+|+++||++.|.|++||+.+++|++.++++++.+++++++. ++++...... ...+.+......++++|++|
T Consensus 1 P~S~G~V~L~~~d~~~~p~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (144)
T PF05199_consen 1 PKSRGRVTLDSSDPFGQPLIDPNYLSDPRDLEALREGIKRARRILRAA-FEEIGAGELLPGPSPFCPDASLDSDEDLECY 79 (144)
T ss_dssp -SS-BEEEESSSSTTSEEEEE--TTSSHHHHHHHHHHHHHHHHHHTSG-GGGTEEEEEESCGCSCCGCSTTTCHHHHHHH
T ss_pred CCCCcEEEeCCCCCCCCcEEEeCCCCCHHHHHHHHHHHHHHHHHHhhh-hcccccccccccccccccccccccchhhhhh
Confidence 899999999999999999999999999999999999999999999998 7777543332 11222322235678899999
Q ss_pred hhcccccccccCcccccCCCCCCCCeeCCCCeEEccCCeEEecCcCCCCCCCCCcHHHHHHHHHHH
Q psy759 153 VRHITTQLHHQCGTCKMGPRWDSSAVVDPQLKVYGVDNLRVVDASIIPVIPGGHTVAVVYMIAEKA 218 (230)
Q Consensus 153 i~~~~~~~~H~~GTc~MG~~~~~~~VVD~~lrV~Gv~nLrVvDaSv~P~~~~~n~~~~~~~iaer~ 218 (230)
+++...+.+|++||||||++++. +|||++|||||++||||+||||||+.+++||++|+|||||||
T Consensus 80 ~~~~~~~~~H~~Gt~~mG~~~~~-~VvD~~~rv~g~~nL~V~DaSv~P~~~~~np~~t~~ala~ra 144 (144)
T PF05199_consen 80 IRQNVGTSWHPSGTCRMGPDPDT-SVVDPDLRVHGVRNLRVADASVFPTSPGANPTLTIMALAERA 144 (144)
T ss_dssp HHHHGEECSS-BETT-BTSSTTT-TSB-TTSBBTTSBSEEE-SGGGSSS-SSSSSHHHHHHHHHHH
T ss_pred eeeccceecccccceeccccCCc-eeECCCCCeeeeeeEEECCCCcCCCCCCcCcHHHHHHHeeCC
Confidence 99999999999999999987655 999999999999999999999999999999999999999997
No 4
>PRK02106 choline dehydrogenase; Validated
Probab=100.00 E-value=9.8e-41 Score=313.04 Aligned_cols=157 Identities=34% Similarity=0.468 Sum_probs=142.4
Q ss_pred CeEEEEEeeeecCCCeEEEccCCCCCCCceeeeCCCCCHHHHHHHHHHHHHHHHHHccchhhhhccccccCCCCCCCCCC
Q psy759 63 DSWSIWPMILYPRSRGKVLLKDSHPLTPPLIHANFFNDTRDLDVIVEGIKMAIELSKTKAFQSIGSTLHKAPIPGCSQYT 142 (230)
Q Consensus 63 ~~~~~~~~l~~P~SrG~V~L~s~dp~~~P~I~~~yl~~~~D~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~p~~~~~~ 142 (230)
..+++.+.+++|+|||+|+|+++||++.|+|+++|+.++.|++.++++++++++++++++++.+...+. .|++ .
T Consensus 380 ~~~~~~~~~~~P~srG~V~L~s~d~~~~P~i~~~y~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~---~p~~---~ 453 (560)
T PRK02106 380 HGFQAHVGPMRSPSRGSVKLKSADPRAHPSILFNYMSTEQDWREFRDAIRLTREIMAQPALDPYRGREI---SPGA---D 453 (560)
T ss_pred CeEEEEEEecCCcceEEEEEeCCCCccCceEccccCCCHHHHHHHHHHHHHHHHHHcChhhhhcccccc---CCCc---c
Confidence 457777788999999999999999999999999999999999999999999999999998887654432 4554 2
Q ss_pred CCChhhhhhhhhcccccccccCcccccCCCCCCCCeeCCCCeEEccCCeEEecCcCCCCCCCCCcHHHHHHHHHHHHHHH
Q psy759 143 FGSDAYWGCSVRHITTQLHHQCGTCKMGPRWDSSAVVDPQLKVYGVDNLRVVDASIIPVIPGGHTVAVVYMIAEKASDMI 222 (230)
Q Consensus 143 ~~~~~~~~~~i~~~~~~~~H~~GTc~MG~~~~~~~VVD~~lrV~Gv~nLrVvDaSv~P~~~~~n~~~~~~~iaer~a~~I 222 (230)
..++++|++|+++...+.+|++||||||+ |++||||++|||||++|||||||||||+++++||++|+||||||+||+|
T Consensus 454 ~~~~~~~~~~i~~~~~~~~H~~GTcrMG~--d~~sVVD~~~rV~Gv~nLrVvDaSv~P~~~~~np~~ti~aiaeraAd~I 531 (560)
T PRK02106 454 VQTDEEIDAFVREHAETAYHPSCTCKMGT--DPMAVVDPEGRVHGVEGLRVVDASIMPTITNGNLNAPTIMIAEKAADLI 531 (560)
T ss_pred cCCHHHHHHHHHhccCcCcccCCCeecCC--CCCeeECCCCEEeccCCeEEeeccccCCCCCcchHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999997 4479999999999999999999999999999999999999999999999
Q ss_pred HhhhC
Q psy759 223 KKTWL 227 (230)
Q Consensus 223 ~~~~~ 227 (230)
+++++
T Consensus 532 ~~~~~ 536 (560)
T PRK02106 532 RGRTP 536 (560)
T ss_pred hccCC
Confidence 99873
No 5
>PLN02785 Protein HOTHEAD
Probab=100.00 E-value=2e-40 Score=311.37 Aligned_cols=152 Identities=28% Similarity=0.378 Sum_probs=135.0
Q ss_pred EEEEeeeecCCCeEEEccCCCCCCCceeeeCCCCCHHHHHHHHHHHHHHHHHHccchhhhhccccccC------------
Q psy759 66 SIWPMILYPRSRGKVLLKDSHPLTPPLIHANFFNDTRDLDVIVEGIKMAIELSKTKAFQSIGSTLHKA------------ 133 (230)
Q Consensus 66 ~~~~~l~~P~SrG~V~L~s~dp~~~P~I~~~yl~~~~D~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~------------ 133 (230)
.+...+++|+|||+|+|+|+||.+.|.|++|||++|.|++.+++++|++++++++++++.+...+..+
T Consensus 416 ~~~~~l~~P~SrG~V~L~ssdp~~~P~i~~ny~~~p~Dl~~~~~g~r~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (587)
T PLN02785 416 FILEKIAGPISTGHLSLINTNVDDNPSVTFNYFKHPQDLQRCVYGIRTIEKIVKTNHFTNFTQCDKQTMEKVLNMSVKAN 495 (587)
T ss_pred eEEEEecCCCcceEEEecCCCCCcCCccccccCCCHHHHHHHHHHHHHHHHHHcChhhhhhccccccccccccccccccc
Confidence 34567889999999999999999999999999999999999999999999999999988875322110
Q ss_pred --CCCCCCCCCCCChhhhhhhhhcccccccccCcccccCCCCCCCCeeCCCCeEEccCCeEEecCcCCCCCCCCCcHHHH
Q psy759 134 --PIPGCSQYTFGSDAYWGCSVRHITTQLHHQCGTCKMGPRWDSSAVVDPQLKVYGVDNLRVVDASIIPVIPGGHTVAVV 211 (230)
Q Consensus 134 --~~p~~~~~~~~~~~~~~~~i~~~~~~~~H~~GTc~MG~~~~~~~VVD~~lrV~Gv~nLrVvDaSv~P~~~~~n~~~~~ 211 (230)
..|+ ...+|++|++|+|++..+.||++|||+|| +|||++||||||+|||||||||||.+|++|||+|+
T Consensus 496 ~~~~p~----~~~~d~~l~~~ir~~~~t~~H~~GTc~MG------~VVD~~lrV~GV~~LRVvDaSi~P~~p~~np~atv 565 (587)
T PLN02785 496 INLIPK----HTNDTKSLEQFCKDTVITIWHYHGGCHVG------KVVDQNYKVLGVSRLRVIDGSTFDESPGTNPQATV 565 (587)
T ss_pred cccCCC----CCCCHHHHHHHHHHhcccccCCcccccCC------CeECCCCeEeccCCeEEeecccCCCCCCCccHHHH
Confidence 0121 13577899999999999999999999999 59999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhC
Q psy759 212 YMIAEKASDMIKKTWL 227 (230)
Q Consensus 212 ~~iaer~a~~I~~~~~ 227 (230)
||||||+|++|++++.
T Consensus 566 ~miaer~A~~Il~~~~ 581 (587)
T PLN02785 566 MMMGRYMGVKILRERL 581 (587)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999998764
No 6
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=100.00 E-value=8.7e-36 Score=278.12 Aligned_cols=185 Identities=30% Similarity=0.520 Sum_probs=156.7
Q ss_pred EEECCCCCCCCCCCCEEEEeeccccccCCcchhhhhccccccccccccccCCCCCeEEEEEeeeecCCCeEEEccCCCCC
Q psy759 9 YVNTKYNVFPDDLPDIEFIFTAVSLASDGGVSLRQEMGITDHLYNSVYSSVDRKDSWSIWPMILYPRSRGKVLLKDSHPL 88 (230)
Q Consensus 9 f~~s~~~~~~~~~pdiq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~P~SrG~V~L~s~dp~ 88 (230)
|+++.. ...+||+|+++.+.+.... .....+.+++....++|.|||.|++++.||.
T Consensus 351 f~~~~~---~~~~p~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~rp~srg~v~~~~~d~~ 406 (542)
T COG2303 351 FVRSGP---AGEYPDGQYHFAPLPLAIR---------------------AAGAEHGFTLHVGPMRPKSRGSVTLRSPDPD 406 (542)
T ss_pred ccccCc---cccCCCccccccccccccc---------------------ccccCCccEEeeccCCCccccceecCCCCCc
Confidence 666552 3467888888876433211 1234578899999999999999999999999
Q ss_pred CCceeeeCCCCCHHHHHHHHHHHHHHHHHHccchhhhhccccccCCCCCCCCCCCCChhhhhhhhhcccccccccCcccc
Q psy759 89 TPPLIHANFFNDTRDLDVIVEGIKMAIELSKTKAFQSIGSTLHKAPIPGCSQYTFGSDAYWGCSVRHITTQLHHQCGTCK 168 (230)
Q Consensus 89 ~~P~I~~~yl~~~~D~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~i~~~~~~~~H~~GTc~ 168 (230)
..|.|++||++++.|++.++++++..+++..+..+..+...+. .|+. .+.+++++..|++....+.+|++||||
T Consensus 407 ~~p~i~~~~~~~~~d~~~~~~~~~~~r~i~~~~~~~~~~~~e~---~~~~---~~~~~~~~~~~~~~~~~t~~H~~GT~r 480 (542)
T COG2303 407 NRPVIDPNYLSAEGDRAIFRAGIRLTREIIGQPALDARRKAEL---APGP---RVTTDEDISAAIRFLARTAYHPMGTCR 480 (542)
T ss_pred CCcccCccccCchhHHHHHHHHHHHHHHHhcCccchhhHHHhh---cCCC---ccccHHHHHHHHHhccCcccccccccc
Confidence 9999999999999999999999999999999877777665443 4544 357888999999999999999999999
Q ss_pred cCCCCCCCCeeC-CCCeEEccCCeEEecCcCCCCCCCCCcHHHHHHHHHHHHHHHHhh
Q psy759 169 MGPRWDSSAVVD-PQLKVYGVDNLRVVDASIIPVIPGGHTVAVVYMIAEKASDMIKKT 225 (230)
Q Consensus 169 MG~~~~~~~VVD-~~lrV~Gv~nLrVvDaSv~P~~~~~n~~~~~~~iaer~a~~I~~~ 225 (230)
||. |+..||| ++|||||++||||||||+||+++++||++|++|||||+|++|+++
T Consensus 481 MG~--Dp~~~V~d~~lrv~g~~nL~VvDaSvmPt~~~~Np~~ti~ala~raA~~I~~~ 536 (542)
T COG2303 481 MGS--DPAAVVDDPYLRVHGLENLRVVDASVMPTSTGVNPNLTIIALAERAADHILGD 536 (542)
T ss_pred CCC--CchhhccccccccccCCCeEEeCcccCcCccCCCccHhHHHHHHHHHHHHhhc
Confidence 995 4455555 999999999999999999999999999999999999999999974
No 7
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=99.88 E-value=2.2e-22 Score=187.06 Aligned_cols=131 Identities=19% Similarity=0.216 Sum_probs=108.6
Q ss_pred ecCCCeEEEccC--CCCCCCceeeeCCCCCHHHHHHHHHHHHHHHHHHccchhhhhccccccCCCCCCCCCCCCChhhhh
Q psy759 73 YPRSRGKVLLKD--SHPLTPPLIHANFFNDTRDLDVIVEGIKMAIELSKTKAFQSIGSTLHKAPIPGCSQYTFGSDAYWG 150 (230)
Q Consensus 73 ~P~SrG~V~L~s--~dp~~~P~I~~~yl~~~~D~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 150 (230)
-|....+|+|++ +|.++.|+....|-.++.|++.+..+.+.+.++++..+.. . +.. ..
T Consensus 411 lP~~~NrV~Ld~~~~D~~G~P~~~i~~~~~~~d~~~~~~~~~~~~~i~~~~G~~-----~-----~~~-------~~--- 470 (544)
T TIGR02462 411 EPKEENKLVFQDKVTDTYNMPQPTFDFRFSAADSKRARRMMTDMCNVAAKIGGY-----L-----PGS-------LP--- 470 (544)
T ss_pred CCCCCCeEEcCCCCcCCCCCeeEEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCC-----c-----ccc-------cc---
Confidence 488889999975 5999999999999999999999999999999987554321 1 110 00
Q ss_pred hhhhcccccccccCcccccCCCCCCCCeeCCCCeEEccCCeEEecCcCCCCCCCCCcHHHHHHHHHHHHHHHHhhh
Q psy759 151 CSVRHITTQLHHQCGTCKMGPRWDSSAVVDPQLKVYGVDNLRVVDASIIPVIPGGHTVAVVYMIAEKASDMIKKTW 226 (230)
Q Consensus 151 ~~i~~~~~~~~H~~GTc~MG~~~~~~~VVD~~lrV~Gv~nLrVvDaSv~P~~~~~n~~~~~~~iaer~a~~I~~~~ 226 (230)
.+. ....++|++||||||.+ +.++|||+++||||++||||+|+|+||+.+++||++|+|++|+|+|+.|++++
T Consensus 471 ~~~--~~~~~~H~~Gt~rMG~d-p~~sVvd~~~rv~g~~NL~V~d~s~~Pt~~~~nPtlTi~ala~r~a~~i~~~~ 543 (544)
T TIGR02462 471 QFM--EPGLALHLAGTTRIGFD-EQTTVANTDSKVHNFKNLYVGGNGNIPTAFGANPTLTSMCYAIKSAEYIINNF 543 (544)
T ss_pred ccc--CCCccccCCCCeecCCC-CCCceECCCCcEeCCCCeEEeccCcCCCCCCCCcHHHHHHHHHHHHHHHHHhc
Confidence 010 12357899999999975 46799999999999999999999999999999999999999999999999875
No 8
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=82.58 E-value=2.8 Score=38.35 Aligned_cols=51 Identities=25% Similarity=0.226 Sum_probs=36.5
Q ss_pred CeeCCCCeEEccCCeEEe-cCcCCCCC-CCCCcHHHHHHHHHHHHHHHHhhhC
Q psy759 177 AVVDPQLKVYGVDNLRVV-DASIIPVI-PGGHTVAVVYMIAEKASDMIKKTWL 227 (230)
Q Consensus 177 ~VVD~~lrV~Gv~nLrVv-DaSv~P~~-~~~n~~~~~~~iaer~a~~I~~~~~ 227 (230)
=+||+.|++.|.++++++ |++-++.. |.-.+.=..+.-|+.+|+.|++.++
T Consensus 280 l~V~~~L~~~~~~~IFa~GD~A~~~~~~p~P~tAQ~A~Qqg~~~a~ni~~~l~ 332 (405)
T COG1252 280 LVVNPTLQVPGHPDIFAAGDCAAVIDPRPVPPTAQAAHQQGEYAAKNIKARLK 332 (405)
T ss_pred EEeCCCcccCCCCCeEEEeccccCCCCCCCCChhHHHHHHHHHHHHHHHHHhc
Confidence 589999999999999987 88888875 1112222345566777777777664
No 9
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=71.60 E-value=61 Score=29.94 Aligned_cols=72 Identities=14% Similarity=-0.074 Sum_probs=42.4
Q ss_pred CCChhhhhhhhhcccccccccCcccccCCCCCCCCeeCCCCeEEccCCeEEecCcCCCCCCCCCcHHHHHHHHHHHHHHH
Q psy759 143 FGSDAYWGCSVRHITTQLHHQCGTCKMGPRWDSSAVVDPQLKVYGVDNLRVVDASIIPVIPGGHTVAVVYMIAEKASDMI 222 (230)
Q Consensus 143 ~~~~~~~~~~i~~~~~~~~H~~GTc~MG~~~~~~~VVD~~lrV~Gv~nLrVvDaSv~P~~~~~n~~~~~~~iaer~a~~I 222 (230)
+.+...|+.|.....++.+|..=+..... ... ...+ ..++||+.|.+|++|- +-. ..+++=|..+|+.|
T Consensus 420 v~TP~t~~~~~~~~~G~~~G~~~~~~q~~---~~~---~~~~-t~i~gLyl~G~~~~pG---~Gv-~g~~~sg~~~a~~i 488 (492)
T TIGR02733 420 LATPRTFERWTGRPQGIVGGLGQRPSTFG---PFG---LSSR-TPVKGLWLCGDSIHPG---EGT-AGVSYSALMVVRQI 488 (492)
T ss_pred ccCCchHHHHhCCCCcEECCCCcCccccC---CcC---CCCC-CCCCCeEEecCccCCC---CcH-HHHHHHHHHHHHHH
Confidence 45677788876555555555433222110 001 1113 3799999999999883 111 23556688888888
Q ss_pred Hhh
Q psy759 223 KKT 225 (230)
Q Consensus 223 ~~~ 225 (230)
+++
T Consensus 489 ~~~ 491 (492)
T TIGR02733 489 LAS 491 (492)
T ss_pred hhc
Confidence 653
No 10
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=71.19 E-value=9.8 Score=33.60 Aligned_cols=50 Identities=16% Similarity=0.168 Sum_probs=35.6
Q ss_pred CeeCCCCeEEccCCeEEe-cCcCCCCCCCCCcHHHHHHHHHHHHHHHHhhh
Q psy759 177 AVVDPQLKVYGVDNLRVV-DASIIPVIPGGHTVAVVYMIAEKASDMIKKTW 226 (230)
Q Consensus 177 ~VVD~~lrV~Gv~nLrVv-DaSv~P~~~~~n~~~~~~~iaer~a~~I~~~~ 226 (230)
=+||..+|..+++|++++ |++.++..+...+...++.-|+.+|..|.+..
T Consensus 260 i~vd~~l~~~~~~~Iya~GD~~~~~~~~~~~~~~~A~~~g~~~a~ni~~~l 310 (364)
T TIGR03169 260 LRVDPTLQSLSHPHVFAAGDCAVITDAPRPKAGVYAVRQAPILAANLRASL 310 (364)
T ss_pred EEECCccccCCCCCEEEeeeeeecCCCCCCCchHHHHHhHHHHHHHHHHHh
Confidence 358889999899999998 67766655444444456667777787776554
No 11
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=68.34 E-value=13 Score=33.83 Aligned_cols=50 Identities=16% Similarity=0.081 Sum_probs=36.5
Q ss_pred eeCCCCeEEccCCeEEe-cCcCCCCCCCCCcHHHHHHHHHHHHHHHHhhhC
Q psy759 178 VVDPQLKVYGVDNLRVV-DASIIPVIPGGHTVAVVYMIAEKASDMIKKTWL 227 (230)
Q Consensus 178 VVD~~lrV~Gv~nLrVv-DaSv~P~~~~~n~~~~~~~iaer~a~~I~~~~~ 227 (230)
.||+.+|+.+++|++++ |++-++..+...+...++.-|..+|..|.+..+
T Consensus 298 ~Vd~~l~~~~~~~IfAiGD~a~~~~~~~~~~~~~A~~qg~~~A~ni~~~l~ 348 (424)
T PTZ00318 298 SVDDHLRVKPIPNVFALGDCAANEERPLPTLAQVASQQGVYLAKEFNNELK 348 (424)
T ss_pred EeCCCcccCCCCCEEEEeccccCCCCCCCCchHHHHHHHHHHHHHHHHHhc
Confidence 58999999999999965 888776543333444566778888888876653
No 12
>KOG2495|consensus
Probab=66.13 E-value=6.2 Score=36.36 Aligned_cols=42 Identities=26% Similarity=0.263 Sum_probs=30.2
Q ss_pred eeCCCCeEEccCCeEE-ecCcCCCCCCCCCcHHHHHHHHHHHHHHHHhh
Q psy759 178 VVDPQLKVYGVDNLRV-VDASIIPVIPGGHTVAVVYMIAEKASDMIKKT 225 (230)
Q Consensus 178 VVD~~lrV~Gv~nLrV-vDaSv~P~~~~~n~~~~~~~iaer~a~~I~~~ 225 (230)
.||+.|||.|++|++- -|++..|..+. +..+|++=+..+.+.
T Consensus 349 ~vDE~LrV~G~~nvfAiGDca~~~~~~~------tAQVA~QqG~yLAk~ 391 (491)
T KOG2495|consen 349 AVDEWLRVKGVKNVFAIGDCADQRGLKP------TAQVAEQQGAYLAKN 391 (491)
T ss_pred eeeceeeccCcCceEEeccccccccCcc------HHHHHHHHHHHHHHH
Confidence 7999999999999985 48885555432 566777766555443
No 13
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=64.74 E-value=51 Score=30.53 Aligned_cols=76 Identities=16% Similarity=0.032 Sum_probs=44.7
Q ss_pred CCChhhhhhhhhcccccccccCcccc-cCCCCCCCCeeCCCCeEEccCCeEEecCcCCCCCCCCCcHHHHHHHHHHHHHH
Q psy759 143 FGSDAYWGCSVRHITTQLHHQCGTCK-MGPRWDSSAVVDPQLKVYGVDNLRVVDASIIPVIPGGHTVAVVYMIAEKASDM 221 (230)
Q Consensus 143 ~~~~~~~~~~i~~~~~~~~H~~GTc~-MG~~~~~~~VVD~~lrV~Gv~nLrVvDaSv~P~~~~~n~~~~~~~iaer~a~~ 221 (230)
+.|...|+.|.....++.+|..-|.. ++. .-+..+-..++||+.+.+|++|-. -. ..+++=|..+|+.
T Consensus 419 ~~TP~t~~~~~~~~~G~~~G~~~~~~q~~~-------~rp~~~~t~i~gLyl~G~~~~pG~---Gv-~g~~~sg~~~a~~ 487 (502)
T TIGR02734 419 TFTPADFRDRYNAWLGSAFSLEHTLTQSAW-------FRPHNRDRKIDNLYLVGAGTHPGA---GV-PGVLGSAKATAKL 487 (502)
T ss_pred EcCHHHHHHhcCCCCccccchhhchhhccc-------CCCCCCCCCCCCEEEeCCCCCCCC---CH-HHHHHHHHHHHHH
Confidence 45677788775444444554433222 110 011123457999999999998831 22 2345567888888
Q ss_pred HHhhhCCC
Q psy759 222 IKKTWLPN 229 (230)
Q Consensus 222 I~~~~~~~ 229 (230)
|+++.+.+
T Consensus 488 il~~~~~~ 495 (502)
T TIGR02734 488 MLGDLAPG 495 (502)
T ss_pred HHhhccCC
Confidence 88877543
No 14
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=58.78 E-value=22 Score=24.52 Aligned_cols=35 Identities=26% Similarity=0.383 Sum_probs=29.1
Q ss_pred ccCCeEEecCcCCCCCCCCCcHHHHHHHHHHHHHH
Q psy759 187 GVDNLRVVDASIIPVIPGGHTVAVVYMIAEKASDM 221 (230)
Q Consensus 187 Gv~nLrVvDaSv~P~~~~~n~~~~~~~iaer~a~~ 221 (230)
.+.|.||+|..+.|..|....-+.++++|-=++-+
T Consensus 37 ~~~~~~ivd~A~~P~~P~~P~~~lil~l~~~~Gl~ 71 (82)
T PF13807_consen 37 NVSNVRIVDPAIVPDKPVSPKRALILALGLFLGLI 71 (82)
T ss_pred cCCCceeccccccCCCCCCCcHHHHHHHHHHHHHH
Confidence 45688999999999999999999988888655443
No 15
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=47.05 E-value=45 Score=28.28 Aligned_cols=64 Identities=17% Similarity=0.110 Sum_probs=45.4
Q ss_pred cCcccccCCCCCCCCeeCCCCeEEccCCeEEecCcCCCC---CCCCCcHHHHHHHHHHHHHHHHhhhCC
Q psy759 163 QCGTCKMGPRWDSSAVVDPQLKVYGVDNLRVVDASIIPV---IPGGHTVAVVYMIAEKASDMIKKTWLP 228 (230)
Q Consensus 163 ~~GTc~MG~~~~~~~VVD~~lrV~Gv~nLrVvDaSv~P~---~~~~n~~~~~~~iaer~a~~I~~~~~~ 228 (230)
..|--.|-.+.....||+.-.+| +.||+|+.-++--. .==|++..-.+.=++|+|+.|+++++.
T Consensus 190 ~~g~~~~~~~~~e~~v~~~t~~~--~~g~~~~gm~~~~~~~~~rmg~~fg~m~~sg~~~a~~~~~~~~~ 256 (257)
T PRK04176 190 VPGEKSMWAERGEKLVVENTGEV--YPGLYVAGMAANAVHGLPRMGPIFGGMLLSGKKVAELILEKLKK 256 (257)
T ss_pred cCCccccccCchHHHHHhcCCeE--cCCEEEeehhhhhhcCCCccCchhHhHHHhHHHHHHHHHHHhhc
Confidence 34555555444456899999999 78999988654332 223556666677899999999998875
No 16
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=39.77 E-value=65 Score=29.52 Aligned_cols=51 Identities=18% Similarity=0.159 Sum_probs=36.5
Q ss_pred eeCCCCeEEc-----cCCeEEec---Cc-CCCC-CCCCCcHHHHHHHHHHHHHHHHhhhCC
Q psy759 178 VVDPQLKVYG-----VDNLRVVD---AS-IIPV-IPGGHTVAVVYMIAEKASDMIKKTWLP 228 (230)
Q Consensus 178 VVD~~lrV~G-----v~nLrVvD---aS-v~P~-~~~~n~~~~~~~iaer~a~~I~~~~~~ 228 (230)
.+|.++||.. |.|||.+. ++ ++-. -+++|..+-++..|..+++.+.+.-++
T Consensus 403 ~~d~~~~vl~~~g~~I~GLYAaGe~~gg~~~g~~y~~g~~l~~~~~~G~iag~~aa~~~~~ 463 (466)
T PRK08274 403 KVDEDARVRFADGRPSPNLFAAGEMMAGNVLGKGYPAGVGLTIGAVFGRIAGEEAARHAQH 463 (466)
T ss_pred EECCCceEECCCCCCCCCceecccccccccccCCCccccchhhhhhhHHHHHHHHHHHhhh
Confidence 4777777764 89999997 33 5532 345777888888888888887765544
No 17
>PRK07121 hypothetical protein; Validated
Probab=34.37 E-value=92 Score=28.90 Aligned_cols=49 Identities=16% Similarity=0.150 Sum_probs=38.0
Q ss_pred CeeCCC-CeEEc-----cCCeEEec---CcCCCC-CCCCCcHHHHHHHHHHHHHHHHhh
Q psy759 177 AVVDPQ-LKVYG-----VDNLRVVD---ASIIPV-IPGGHTVAVVYMIAEKASDMIKKT 225 (230)
Q Consensus 177 ~VVD~~-lrV~G-----v~nLrVvD---aSv~P~-~~~~n~~~~~~~iaer~a~~I~~~ 225 (230)
=++|.+ +||.. +.|||.+. ++++=. -++|+..+.++..|..+++.+.+.
T Consensus 432 l~id~~~~qVld~~g~pI~GLYAaG~~~gg~~g~~y~~G~~l~~~~~~GriAg~~aa~~ 490 (492)
T PRK07121 432 LRVDEDTGEVLRADGAPIPGLYAAGRCASGIASNGYVSGLSLADCSFFGRRAGRHAAAR 490 (492)
T ss_pred eeECCCcceEECCCCCCcCceEecccccccCCCCCCCCccccchhHHHHHHHHHHHHhh
Confidence 458888 88886 89999997 345422 347899999999999999987653
No 18
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=33.06 E-value=2.9e+02 Score=26.36 Aligned_cols=49 Identities=20% Similarity=0.150 Sum_probs=34.8
Q ss_pred CeeCCCCeEEccCCeEEec---CcCCC--CCCCCCcHHHHHHHHHHHHHHHHhhhC
Q psy759 177 AVVDPQLKVYGVDNLRVVD---ASIIP--VIPGGHTVAVVYMIAEKASDMIKKTWL 227 (230)
Q Consensus 177 ~VVD~~lrV~Gv~nLrVvD---aSv~P--~~~~~n~~~~~~~iaer~a~~I~~~~~ 227 (230)
-|+|.+++ =|.|||.+. ++++= ...+|+..+.++..|..+++.+.+...
T Consensus 519 qVld~~g~--pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~~~ 572 (581)
T PRK06134 519 RVLDQAGQ--PIPGLYAAGNDMASVMGGFYPSGGITLGPALTFGYIAGRHIAGASG 572 (581)
T ss_pred ceECCCCC--CcCcceeccccccccccCCcCCcchhHHHHHHHHHHHHHHHhhcCC
Confidence 45665555 379999997 34442 123688899999999999998876553
No 19
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=29.77 E-value=1.2e+02 Score=28.89 Aligned_cols=51 Identities=16% Similarity=0.249 Sum_probs=35.6
Q ss_pred eeCCCCeEEc-----cCCeEEecC---cCCCC-CCC-CCcHHHHHHHHHHHHHHHHhhhCC
Q psy759 178 VVDPQLKVYG-----VDNLRVVDA---SIIPV-IPG-GHTVAVVYMIAEKASDMIKKTWLP 228 (230)
Q Consensus 178 VVD~~lrV~G-----v~nLrVvDa---Sv~P~-~~~-~n~~~~~~~iaer~a~~I~~~~~~ 228 (230)
.+|.++||.. |.|||.+.. +++-. -++ |+..+.++..|..+++.+.+..+.
T Consensus 492 ~in~~~qVld~~g~pIpGLYAAG~~~gg~~g~~Y~~~G~~l~~a~~~GriAg~~aa~~~~~ 552 (557)
T PRK12844 492 LTDEHARVLREDGSVIPGLYATGNCTASVMGRTYPGAGASIGNSFVFGYIAALHAAGARSA 552 (557)
T ss_pred cCCCCceEECCCCCCccceeeccccccccccCCCCcCccchHHHHHHHHHHHHHHHhccCC
Confidence 3555555555 899999963 45532 233 788999999999999988766543
No 20
>PRK12839 hypothetical protein; Provisional
Probab=29.77 E-value=1.1e+02 Score=29.20 Aligned_cols=49 Identities=18% Similarity=0.171 Sum_probs=35.5
Q ss_pred eCCCCeEEc-----cCCeEEec---CcCCCC--CCCCCcHHHHHHHHHHHHHHHHhhhC
Q psy759 179 VDPQLKVYG-----VDNLRVVD---ASIIPV--IPGGHTVAVVYMIAEKASDMIKKTWL 227 (230)
Q Consensus 179 VD~~lrV~G-----v~nLrVvD---aSv~P~--~~~~n~~~~~~~iaer~a~~I~~~~~ 227 (230)
+|.++||.+ |.|||.+. +|++-. ..+|+....++..|..|++.+.+.-.
T Consensus 511 in~~~qVLd~dg~pIpGLYAAG~~~gg~~g~~Y~~~G~~lg~a~~fGriAg~~aA~~~~ 569 (572)
T PRK12839 511 ADGKSRVLRDDDTPIDGLYAAGNDQASVMGGHYPSGGINLGPAMTFGYIAGRELAGSTG 569 (572)
T ss_pred CCCCceEECCCCCCcCCceeccccccccccCCCCCcccchhHHHHHHHHHHHHHHhccc
Confidence 455555554 89999997 355532 23688999999999999999876543
No 21
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=28.85 E-value=92 Score=28.89 Aligned_cols=37 Identities=14% Similarity=0.078 Sum_probs=27.3
Q ss_pred EccCCeEEecCcCCCCCCCCCcHHHHHHHHHHHHHHHHhhh
Q psy759 186 YGVDNLRVVDASIIPVIPGGHTVAVVYMIAEKASDMIKKTW 226 (230)
Q Consensus 186 ~Gv~nLrVvDaSv~P~~~~~n~~~~~~~iaer~a~~I~~~~ 226 (230)
-.++||+.+.+|++|- +-. ..+++=|..+|+.|.++.
T Consensus 456 t~i~gLyl~G~~~~pG---~Gv-~g~~~sG~~~a~~i~~~~ 492 (493)
T TIGR02730 456 TAIPGLYCVGDSCFPG---QGL-NAVAFSGFACAHRVAADL 492 (493)
T ss_pred CCCCCeEEecCcCCCC---CCH-HHHHHHHHHHHHHHHhhc
Confidence 5799999999999883 222 335566888888888763
No 22
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=26.66 E-value=1.4e+02 Score=28.50 Aligned_cols=47 Identities=21% Similarity=0.287 Sum_probs=33.9
Q ss_pred eeCCCCeEEc-----cCCeEEec---CcCCC-CCCC-CCcHHHHHHHHHHHHHHHHh
Q psy759 178 VVDPQLKVYG-----VDNLRVVD---ASIIP-VIPG-GHTVAVVYMIAEKASDMIKK 224 (230)
Q Consensus 178 VVD~~lrV~G-----v~nLrVvD---aSv~P-~~~~-~n~~~~~~~iaer~a~~I~~ 224 (230)
.+|.++||.+ |.|||.+. ++++- .-++ |+..+.++..|..|++.+.+
T Consensus 507 ~id~~~qVLd~dg~pI~GLYAaG~~~gg~~g~~Y~g~G~~lg~a~~fGriAg~~aa~ 563 (564)
T PRK12845 507 RADERARVLREDGSVIDGLYAIGNTAANAFGATYPGAGATIGQGLVYGYIAAQDAAA 563 (564)
T ss_pred eECCCceEECCCCCCCCCeeEeeeeccccccCCCCCcchhhHHHHHHHHHHHHHHhc
Confidence 3555555554 89999996 45553 3343 88999999999999988753
No 23
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=26.23 E-value=1.4e+02 Score=28.58 Aligned_cols=50 Identities=18% Similarity=0.173 Sum_probs=33.9
Q ss_pred eeCCCCeEEc-----cCCeEEec---CcCCCC-CC-CCCcHHHHHHHHHHHHHHHHhhhC
Q psy759 178 VVDPQLKVYG-----VDNLRVVD---ASIIPV-IP-GGHTVAVVYMIAEKASDMIKKTWL 227 (230)
Q Consensus 178 VVD~~lrV~G-----v~nLrVvD---aSv~P~-~~-~~n~~~~~~~iaer~a~~I~~~~~ 227 (230)
++|.++||.+ |.|||.+. ++++-. -+ .|+..+.++..|..|++.+.+..+
T Consensus 512 ~in~~~qVLd~~g~pIpGLYAAGe~~Gg~~g~~Y~g~G~slg~a~~fGriAG~~aa~~~~ 571 (584)
T PRK12835 512 RTDEHARVLREDDSVIPGLYAVGNTSASVMGRSYAGAGATIGPAMTFGYVAARHAAAVVA 571 (584)
T ss_pred cCCCCceEECCCCCCccceeeeeecccccccCCCCcCccchHHHHHHHHHHHHHHHHhhh
Confidence 3455555554 78999997 455532 22 377788889999998888766543
No 24
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=26.06 E-value=3.9e+02 Score=25.03 Aligned_cols=60 Identities=13% Similarity=0.209 Sum_probs=38.9
Q ss_pred ccccCcccccCCCCCCCCeeCCCCeEEccCCeEEecC---cCC-CCCC-CCCcHHHHHHHHHHHHHHHHh
Q psy759 160 LHHQCGTCKMGPRWDSSAVVDPQLKVYGVDNLRVVDA---SII-PVIP-GGHTVAVVYMIAEKASDMIKK 224 (230)
Q Consensus 160 ~~H~~GTc~MG~~~~~~~VVD~~lrV~Gv~nLrVvDa---Sv~-P~~~-~~n~~~~~~~iaer~a~~I~~ 224 (230)
.+|.+|.+++=. ..-|+|.++++ |.|||.+.. +++ ..-+ +||..+.++..+..|+..+.+
T Consensus 446 ~~~T~GGl~in~---~~qVl~~~g~p--IpGLYAaG~~~gg~~g~~Y~~~G~~~~~a~~fGriAg~~aa~ 510 (513)
T PRK12837 446 DLGTKGGLRTDT---AARVLDTDGRP--IPGLYAAGNTMAAVSGTTYPGGGNPIGASMLFSHLAALDMAG 510 (513)
T ss_pred cceeCCCceECC---CceEECCCCCE--eCCceecccccccccccCCCCCccchHHHHHHHHHHHHHHhc
Confidence 344445554432 23466666654 699999865 344 2223 489899999999999988743
No 25
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=24.81 E-value=1.8e+02 Score=27.77 Aligned_cols=48 Identities=21% Similarity=0.218 Sum_probs=34.3
Q ss_pred CeeCCCCeEEccCCeEEec---CcCCCC-CC-CCCcHHHHHHHHHHHHHHHHhhh
Q psy759 177 AVVDPQLKVYGVDNLRVVD---ASIIPV-IP-GGHTVAVVYMIAEKASDMIKKTW 226 (230)
Q Consensus 177 ~VVD~~lrV~Gv~nLrVvD---aSv~P~-~~-~~n~~~~~~~iaer~a~~I~~~~ 226 (230)
-|+|.++++ |.|||.+. ++++-. -+ .|++.+.++..|..|++.+.+..
T Consensus 515 qVld~~g~p--IpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~~ 567 (574)
T PRK12842 515 EVLDADGTP--IAGLYAVGNDRASIMGGNYPGAGITLGPIMTFGYITGRHLAGVA 567 (574)
T ss_pred eEECCCCCC--cCCceecccccccCccCCCCCCcccHHHHHHHHHHHHHHHHhhh
Confidence 466666553 79999998 345432 12 48889999999999999887654
No 26
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=23.85 E-value=1.9e+02 Score=27.60 Aligned_cols=50 Identities=26% Similarity=0.214 Sum_probs=33.5
Q ss_pred eeCCCCeEEc-----cCCeEEec---CcCCCC--CCCCCcHHHHHHHHHHHHHHHHhhhC
Q psy759 178 VVDPQLKVYG-----VDNLRVVD---ASIIPV--IPGGHTVAVVYMIAEKASDMIKKTWL 227 (230)
Q Consensus 178 VVD~~lrV~G-----v~nLrVvD---aSv~P~--~~~~n~~~~~~~iaer~a~~I~~~~~ 227 (230)
.+|.++||.. |.|||.+. ++++-. ...|++.+.++..|..+++.+.+..+
T Consensus 514 ~in~~~qVld~dg~pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~~~ 573 (578)
T PRK12843 514 VTDASARVLNADGQPISGLYACGNDMASIMGGTYPGPGITLGPAIVFAYLAARHAAKRTL 573 (578)
T ss_pred cCCCCceEECCCCCCcCCceeccccccccccCCCCCcccchHHHHHHHHHHHHHHHHhhh
Confidence 3455555554 79999986 344432 12477888899999998888766543
No 27
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=23.33 E-value=2e+02 Score=26.84 Aligned_cols=49 Identities=14% Similarity=0.185 Sum_probs=35.7
Q ss_pred eeCCCCeEEc-----cCCeEEecC---cCCC-CCCCCCcHHHHHHHHHHHHHHHHhhh
Q psy759 178 VVDPQLKVYG-----VDNLRVVDA---SIIP-VIPGGHTVAVVYMIAEKASDMIKKTW 226 (230)
Q Consensus 178 VVD~~lrV~G-----v~nLrVvDa---Sv~P-~~~~~n~~~~~~~iaer~a~~I~~~~ 226 (230)
.+|.++||.. |+|||.+.- +++- .-++|+..+.++..|..+++.+.+..
T Consensus 446 ~in~~~qVld~~g~pI~GLYAaGe~~gg~~g~~~~~G~~l~~~~~~GriAg~~aa~~~ 503 (506)
T PRK06481 446 KINTNTEVLKKDGSPITGLYAAGEVTGGLHGENRIGGNSVADIIIFGRQAGTQSAEFA 503 (506)
T ss_pred EECCCceEEcCCCCEeCCeeeceeccccCCCCCCCchhhHHHHHHHHHHHHHHHHHhh
Confidence 4777777754 899999854 4442 34568889999999999988876543
No 28
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=22.72 E-value=88 Score=26.49 Aligned_cols=62 Identities=18% Similarity=0.157 Sum_probs=41.7
Q ss_pred CcccccCCCCCCCCeeCCCCeEEccCCeEEecCcCCCC---CCCCCcHHHHHHHHHHHHHHHHhhhC
Q psy759 164 CGTCKMGPRWDSSAVVDPQLKVYGVDNLRVVDASIIPV---IPGGHTVAVVYMIAEKASDMIKKTWL 227 (230)
Q Consensus 164 ~GTc~MG~~~~~~~VVD~~lrV~Gv~nLrVvDaSv~P~---~~~~n~~~~~~~iaer~a~~I~~~~~ 227 (230)
.|--.|-....+..||+.-..| +.||+|+.-++--. .==|++..-.++=++|+|+.|+++++
T Consensus 190 ~g~~~~~~~~~e~~~~~~t~~~--~~g~~~~gm~~~~~~~~~rmgp~fg~m~~sg~~~a~~~~~~~~ 254 (254)
T TIGR00292 190 GGEKSMWAEVAEVAIHENTREV--VPNLYVAGMAVAAVHGLPRMGPIFGGMLLSGKHVAEQILEKLK 254 (254)
T ss_pred CCchhhhhhhhHHHHHhccCcc--cCCEEEechhhhhhcCCCCcCchHHHHHHhhHHHHHHHHHHhC
Confidence 3444443333345788888888 78999988665422 22355566667789999999998764
Done!