RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy759
(230 letters)
>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG
BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP:
c.3.1.2 d.16.1.1
Length = 587
Score = 230 bits (590), Expect = 8e-73
Identities = 49/225 (21%), Positives = 82/225 (36%), Gaps = 31/225 (13%)
Query: 3 GCEGLAYVNTKYNVFPDDLPDIEFIFTAVSLASDGGVSLRQEMGITDHLYNSVYSSVDRK 62
G + + +Y + + L D + F + + ++G ++
Sbjct: 389 GFHNVTALKVQYENYRNWLLDEDVAFAELFMDTEGKINF--------------------- 427
Query: 63 DSWSIWPMILYPRSRGKVLLKDSHPLT-PPLIHANFFNDTRDLDVIVEGIKMAIELSKTK 121
+W + P +RG V + S P FF + DL K+A +L+
Sbjct: 428 ---DLWDL--IPFTRGSVHILSSDPYLWQFANDPKFFLNEFDLLGQAAASKLARDLTSQG 482
Query: 122 AFQSIGSTLHKAPIPGCSQYTFGSDAYWGCSVRHITTQLHHQCGTCKMGPRWDSSAVVDP 181
A + +PG + + + W V H +C M R + VVD
Sbjct: 483 AMKEYF---AGETLPGYNLVQNATLSQWSDYVLQNFRPNWHAVSSCSMMSR-ELGGVVDA 538
Query: 182 QLKVYGVDNLRVVDASIIPVIPGGHTVAVVYMIAEKASDMIKKTW 226
KVYG LRV+D SI P H + + Y +A K +D I +
Sbjct: 539 TAKVYGTQGLRVIDGSIPPTQVSSHVMTIFYGMALKVADAILDDY 583
>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase,
flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}
Length = 566
Score = 228 bits (585), Expect = 2e-72
Identities = 59/223 (26%), Positives = 94/223 (42%), Gaps = 14/223 (6%)
Query: 1 MLGCEGLAYVNTKYNVFPDDLPDIEFIFTAVSLASDGGVSLRQEMGITDHLYNSVYSSVD 60
L LA++ P IF + G S E ++ ++ D
Sbjct: 355 ALIANHLAWLRL---------PSNSSIFQTFPDPAAGPNSAHWETIFSNQWFHPAIPRPD 405
Query: 61 RKDSWSIWPMILYPRSRGKVLLKDSHPLTPPLIHANFFNDTRDLDVIVEGIKMAIELSKT 120
S+ ++ P +RG + L S+P PLI+ + + D+ +++ +K +
Sbjct: 406 TGSFMSVTNALISPVARGDIKLATSNPFDKPLINPQYLSTEFDIFTMIQAVKSNLRFLSG 465
Query: 121 KAFQSIGSTLHKAPIPGCSQYTFGSDAYWGCSVRHITTQLHHQCGTCKMGPRWDSSAVVD 180
+A+ P T DA +R + H GT M PR S VVD
Sbjct: 466 QAWADFVIRPFD---PRLRDPT--DDAAIESYIRDNANTIFHPVGTASMSPRGASWGVVD 520
Query: 181 PQLKVYGVDNLRVVDASIIPVIPGGHTVAVVYMIAEKASDMIK 223
P LKV GVD LR+VD SI+P P HT +Y++ ++ +D+IK
Sbjct: 521 PDLKVKGVDGLRIVDGSILPFAPNAHTQGPIYLVGKQGADLIK 563
>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A
{Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*
Length = 583
Score = 217 bits (554), Expect = 1e-67
Identities = 48/214 (22%), Positives = 79/214 (36%), Gaps = 23/214 (10%)
Query: 18 PDDLPDIEFIFTAVSLASDGGVSLRQEMGITDHLYNSVYSSVDRKDSWSIWPMILYPRSR 77
+ + + + L + +++ L P +R
Sbjct: 392 LLIQYENYRDWIVNHNVAYSELFLDTAGVASFDVWD------------------LLPFTR 433
Query: 78 GKVLLKDSHPLT-PPLIHANFFNDTRDLDVIVEGIKMAIELSKTKAFQSIGSTLHKAPIP 136
G V + D P +F + DL ++A +S + A Q+ + IP
Sbjct: 434 GYVHILDKDPYLHHFAYDPQYFLNELDLLGQAAATQLARNISNSGAMQTYFA---GETIP 490
Query: 137 GCSQYTFGSDAYWGCSVRHITTQLHHQCGTCKMGPRWDSSAVVDPQLKVYGVDNLRVVDA 196
G + + W + + +H GTC M P+ + VVD +VYGV LRV+D
Sbjct: 491 GDNLAYDADLSAWTEYIPYHFRPNYHGVGTCSMMPK-EMGGVVDNAARVYGVQGLRVIDG 549
Query: 197 SIIPVIPGGHTVAVVYMIAEKASDMIKKTWLPNQ 230
SI P H + V Y +A K SD I + + Q
Sbjct: 550 SIPPTQMSSHVMTVFYAMALKISDAILEDYASMQ 583
>3q9t_A Choline dehydrogenase and related flavoproteins;
glucose-methanol-choline oxidoreductase family, formate
OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A
{Aspergillus oryzae}
Length = 577
Score = 207 bits (530), Expect = 4e-64
Identities = 56/231 (24%), Positives = 92/231 (39%), Gaps = 12/231 (5%)
Query: 1 MLGCEGLAYVNTKYNVFPDDLPDIEFIFTAVSLASDGGVSLRQEMGITDHL---YNSVYS 57
E + + + D E+ + +
Sbjct: 350 SGLLELVGFPRIDKYLEKDAEYRKAKAANGGKDPFSPLGQPHFELDFVCMFGTAFQWHFP 409
Query: 58 SVDRKDSWSIWPMILYPRSR-GKVLLKDSHPLTPPLIHANFFNDTRDLDVIVEGIKMAIE 116
+ D ++ ++ P S G+V L + P P I+ NFF + D+ + EGI+ + +
Sbjct: 410 TPKTGDHLTVVVDLVRPISDPGEVTLNSADPFQQPNINLNFFANDLDIIAMREGIRFSYD 469
Query: 117 -LSKTKAFQSIGSTLHKAPIPGCSQYTFGSDAYWGCSVRHITTQLHHQCGTCKMGPRWDS 175
L K + F+ + + + +P SD +V H GT ++ D
Sbjct: 470 LLFKGEGFKDLVESEYPWEMP------LDSDKEMHRAVLDRCQTAFHPTGTARLSKNIDQ 523
Query: 176 SAVVDPQLKVYGVDNLRVVDASIIPVIPGGHTVAVVYMIAEKASDMIKKTW 226
VVDP+LKV+G+ LRV DAS+IP+IP VY + EK +DMIK
Sbjct: 524 -GVVDPKLKVHGIKKLRVADASVIPIIPDCRIQNSVYAVGEKCADMIKAEH 573
>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding,
oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}
Length = 526
Score = 189 bits (482), Expect = 2e-57
Identities = 45/204 (22%), Positives = 67/204 (32%), Gaps = 27/204 (13%)
Query: 20 DLPDIEFIFTAVSLASDGGVSLRQEMGITDHLYNSVYSSVDRKDSWSIWPMILYPRSRGK 79
P+I + S+ + + +P SRG
Sbjct: 345 GQPEIVVGCGVAPIVSESFPAPAAGSAYSLLFGI------------------THPTSRGS 386
Query: 80 VLLKDSHPLTPPLIHANFFNDTRDLDVIVEGIKMAIELSKTKAFQSIGSTLHKAPIPGCS 139
V + +I + RD + ++ + + PG
Sbjct: 387 VRISGPELGDRLIIDPAYLQTGRDRERFRRALEASRTIGHRDELAGWRERELL---PGTP 443
Query: 140 QYTFGSDAYWGCSVRHITTQLHHQCGTCKMGPRWDSSAVVDPQLKVYGVDNLRVVDASII 199
S A + HH CGTC+MG D AVVD L++ +DNL VVDASI+
Sbjct: 444 N----SAAEMDDFIARSVITHHHPCGTCRMGK--DPDAVVDANLRLKALDNLFVVDASIM 497
Query: 200 PVIPGGHTVAVVYMIAEKASDMIK 223
P + G A V IAE +
Sbjct: 498 PNLTAGPIHAAVLAIAETFARQYH 521
>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond,
cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A
{Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A*
3gdn_A*
Length = 536
Score = 188 bits (479), Expect = 5e-57
Identities = 47/217 (21%), Positives = 74/217 (34%), Gaps = 33/217 (15%)
Query: 39 VSLRQEMGITDHLYNSVYSSVDRKDS-----------------WSIWPMILYPRSRGKVL 81
++ +GI++ Y +SS+ + P S G +
Sbjct: 313 PTIVTVLGISNDFYQCSFSSLPFTTPPFGFFPSSSYPLPNSTFAHFASKVAGPLSYGSLT 372
Query: 82 LKDS-HPLTPPLIHANFFNDTRDLDVIVEGIKMAIELSKTKAFQ-------SIGSTLHKA 133
LK S + P + N++++ DL V G+K EL T A + +
Sbjct: 373 LKSSSNVRVSPNVKFNYYSNLTDLSHCVSGMKKIGELLSTDALKPYKVEDLPGVEGFNIL 432
Query: 134 PIPGCSQYTFGSDAYWGCSVRHITTQLHHQCGTCKMGPRWDSSAVVDPQLKVYGVDNLRV 193
IP T DA + R H G C +G V+D +V G++ LRV
Sbjct: 433 GIPLPKDQT--DDAAFETFCRESVASYWHYHGGCLVG------KVLDGDFRVTGINALRV 484
Query: 194 VDASIIPVIPGGHTVAVVYMIAEKASDMIKKTWLPNQ 230
VD S P P H M+ I + +
Sbjct: 485 VDGSTFPYTPASHPQGFYLMLGRYVGIKILQERSASD 521
>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently
linked FAD, C4A-adduct, flavoprotein, oxidoreductase;
HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A*
3ljp_A*
Length = 546
Score = 182 bits (464), Expect = 1e-54
Identities = 51/208 (24%), Positives = 82/208 (39%), Gaps = 28/208 (13%)
Query: 20 DLPDIEFIFTAVSLASDGGVSLRQEM--GITDHLYNSVYSSVDRKDSWSIWPMILYPRSR 77
D PD+ + +V + G + + RSR
Sbjct: 344 DRPDLMMHYGSVPFDMNTLRHGYPTTENGFSLTPNV------------------THARSR 385
Query: 78 GKVLLKDSHPLTPPLIHANFFND--TRDLDVIVEGIKMAIELSKTKAFQSIGSTLHKAPI 135
G V L+ P++ +F D D+ V+V GI+ A E++ A
Sbjct: 386 GTVRLRSRDFRDKPMVDPRYFTDPEGHDMRVMVAGIRKAREIAAQPAMAEWTGRELS--- 442
Query: 136 PGCSQYTFGSDAYWGCSVRHITTQLHHQCGTCKMGPRWDSSAVVDPQLKVYGVDNLRVVD 195
PG +D +R ++H GT +MG D + +DP+L+V GV LRV D
Sbjct: 443 PGVE---AQTDEELQDYIRKTHNTVYHPVGTVRMGAVEDEMSPLDPELRVKGVTGLRVAD 499
Query: 196 ASIIPVIPGGHTVAVVYMIAEKASDMIK 223
AS++P + V MI E+ +D+I+
Sbjct: 500 ASVMPEHVTVNPNITVMMIGERCADLIR 527
>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold,
alpha/beta structure, rossman 6-hydroxylated FAD,
oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A
{Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1
PDB: 1naa_A*
Length = 546
Score = 165 bits (421), Expect = 2e-48
Identities = 37/205 (18%), Positives = 73/205 (35%), Gaps = 33/205 (16%)
Query: 20 DLPDIEFIFTAVSLASDGGVSLRQEMGITDHLYNSVYSSVDRKDSWSIWPMILYPRSRGK 79
+ + + + + T +Y S +SRG+
Sbjct: 368 FTRYAQGTVRPGAASVNSSLPYNASQIFTITVYLS-----------------TGIQSRGR 410
Query: 80 VLLKDSHPLTPPLIHANFFNDTRDLDVIVEGIKMAI-ELSKTKAFQSIGSTLHKAPIPGC 138
+ + L ++ + + D V+++ + + + I P
Sbjct: 411 IGIDA--ALRGTVLTPPWLVNPVDKTVLLQALHDVVSNIGSIPGLTMIT--------PDV 460
Query: 139 SQYTFGSDAYWGCSVRHITTQLHHQCGTCKMGPRWDSSAVVDPQLKVYGVDNLRVVDASI 198
+Q + + + T +H + +G SAVVD +KV+G +NL +VDA I
Sbjct: 461 TQ----TLEEYVDAYDPATMNSNHWVSSTTIGSS-PQSAVVDSNVKVFGTNNLFIVDAGI 515
Query: 199 IPVIPGGHTVAVVYMIAEKASDMIK 223
IP +P G+ + AE+A+ I
Sbjct: 516 IPHLPTGNPQGTLMSAAEQAAAKIL 540
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism,
oxidoreductase, atomic RESO; HET: FAD; 0.92A
{Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A*
1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A*
1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*
Length = 504
Score = 75.1 bits (184), Expect = 7e-16
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
Query: 162 HQCGTCKMGPRWDSSAVVDPQLKVYGVDNLRVVDASIIPVIPGGHTVAVVYMIAEKASDM 221
H G C +G D +V G NL V D S+IP G + + +AE+ +
Sbjct: 442 HPLGGCVLG------KATDDYGRVAGYKNLYVTDGSLIPGSVGVNPFVTITALAERNVER 495
Query: 222 I 222
I
Sbjct: 496 I 496
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD;
1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1
PDB: 3cox_A*
Length = 507
Score = 66.3 bits (161), Expect = 6e-13
Identities = 27/160 (16%), Positives = 50/160 (31%), Gaps = 20/160 (12%)
Query: 65 WSIWPMILYPRSRGKVLLKDSHPLTPPLIHANFFNDTRDLDVIVEGIKMAIELSK--TKA 122
I P+ + + L + N DL + I+++K
Sbjct: 360 AEIAPLPAGLETYVSLYLAITKNPERARFQFNSGTGKVDLTWAQSQNQKGIDMAKKVFDK 419
Query: 123 FQSIGSTLHKAPIPGCSQYTFGSDAYWGCSVRHITTQLHHQCGTCKMGPRWDSSAVVDPQ 182
T+++ + G T+G D + H G + D
Sbjct: 420 INQKEGTIYRTDLFGVYYKTWGDDFTY------------HPLGGVLLN------KATDNF 461
Query: 183 LKVYGVDNLRVVDASIIPVIPGGHTVAVVYMIAEKASDMI 222
++ L VVD S++P G + + +AE+ D I
Sbjct: 462 GRLPEYPGLYVVDGSLVPGNVGVNPFVTITALAERNMDKI 501
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer,
GMC oxidoredu PHBH fold, rossmann domain,
oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes
ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A*
2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A*
3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A*
3fdy_A* ...
Length = 623
Score = 65.6 bits (159), Expect = 1e-12
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 161 HHQCGTCKMG--PRWDSSAVVDPQLKVYGVDNLRVVDASIIPVIPGGHTVAVVYMIAEKA 218
H GT +MG + D+ V+ +V+G NL + IP G + +A K+
Sbjct: 547 LHLGGTHRMGFDEKEDNC-CVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIKS 605
Query: 219 SDMIKKTWLPN 229
+ IK+ + P+
Sbjct: 606 CEYIKQNFTPS 616
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.2 bits (83), Expect = 0.008
Identities = 51/244 (20%), Positives = 77/244 (31%), Gaps = 89/244 (36%)
Query: 1 MLGCEGL--AYVNTKYNVFPDDLPDIEFIFTAVSL--ASDGGV------SLRQEMGITDH 50
ML L V N LP + + +SL + V SL G+
Sbjct: 338 MLSISNLTQEQVQDYVNKTNSHLPAGKQV--EISLVNGAKNLVVSGPPQSLY---GLNLT 392
Query: 51 LYNSVYSSVDRK-------DSWSIWPMILYPRSRGKVLLKDSH---PLTPPLIHANFFND 100
L RK D I P S K LK S+ P+ P H++
Sbjct: 393 L---------RKAKAPSGLDQSRI------PFSERK--LKFSNRFLPVASPF-HSHLLVP 434
Query: 101 TRDL---DVIVEGIKMAIELSKTKAFQSIGSTLHKAPIPGCSQY-TF-GSDAYWGCSVRH 155
DL D++ + + IP Y TF GSD +R
Sbjct: 435 ASDLINKDLVKNNVSFN------------AKDIQ---IP---VYDTFDGSD------LRV 470
Query: 156 ITTQLHH---QCGTCKMGP-RWDSSA------VVD--PQLKVYGVDNL--RVVDASIIPV 201
++ + C P +W+++ ++D P G+ L R D + + V
Sbjct: 471 LSGSISERIVDCIIRL--PVKWETTTQFKATHILDFGP-GGASGLGVLTHRNKDGTGVRV 527
Query: 202 IPGG 205
I G
Sbjct: 528 IVAG 531
Score = 35.4 bits (81), Expect = 0.014
Identities = 51/302 (16%), Positives = 86/302 (28%), Gaps = 126/302 (41%)
Query: 18 PDDLPDIEFIFTA-VSL--------------ASDGGVS---LRQEM-GITDHL------- 51
P + PD +++ + +S A G + LR + G T H
Sbjct: 222 PSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAV 281
Query: 52 -------YNSVYSSVDRKDSWSIWPMI------LYPR-SRGKVLLKDS------HPLTPP 91
+ S + SV + + + I YP S +L+DS P +P
Sbjct: 282 AIAETDSWESFFVSVRKAITVLFF--IGVRCYEAYPNTSLPPSILEDSLENNEGVP-SPM 338
Query: 92 L--------------------------IHANFFNDTRDLDVIVEG-----IKMAIELSKT 120
L + + N ++L +V G + + L K
Sbjct: 339 LSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNL--VVSGPPQSLYGLNLTLRKA 396
Query: 121 KAFQSIGSTLHKAP-----IPGCSQY---T--FGSDAYWGCSVRHITTQLHHQCGTCKMG 170
KA G + P + +++ F S + I L
Sbjct: 397 KA--PSGLDQSRIPFSERKLKFSNRFLPVASPFHSH-LLVPASDLINKDLVKN------N 447
Query: 171 PRWDSSAVVDPQLK--VY----GVDNLRVVDASIIPVIPGGHTVAVVYMIAEKASDMIKK 224
+++ ++ VY G D LRV+ SI I V I
Sbjct: 448 VSFNAK-----DIQIPVYDTFDGSD-LRVLSGSISERI--------VDCIIRLPVK---- 489
Query: 225 TW 226
W
Sbjct: 490 -W 490
>2zjr_S 50S ribosomal protein L25; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: b.53.1.1 PDB: 1njm_T* 1nwx_T* 1njp_T*
1xbp_T* 2zjp_S* 2zjq_S 1nwy_T 3cf5_S* 3dll_S* 3pio_S*
3pip_S* 1nkw_T 1sm1_T* 1yl3_V 2b66_Z 2b9n_Z 2b9p_Z
1pnu_T 1pny_T 1vor_W ...
Length = 237
Score = 27.4 bits (61), Expect = 3.3
Identities = 8/33 (24%), Positives = 11/33 (33%), Gaps = 2/33 (6%)
Query: 79 KVLLKD--SHPLTPPLIHANFFNDTRDLDVIVE 109
L+K IH +F+ T V V
Sbjct: 63 PALVKAVQMDKRKRAPIHVDFYMVTYGEPVEVS 95
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.5 bits (57), Expect = 5.4
Identities = 6/23 (26%), Positives = 12/23 (52%), Gaps = 4/23 (17%)
Query: 179 VDPQLKVYGVDN---LRVVDASI 198
+ LK+Y D+ L + A++
Sbjct: 25 LQASLKLYADDSAPAL-AIKATM 46
>2jif_A Short/branched chain specific acyl-COA dehydrogen; mitochondrion,
oxidoreductase, transit peptide, fatty acid metabolism,
FAD, flavoprotein; HET: FAD COS; 2.0A {Homo sapiens}
Length = 404
Score = 26.7 bits (60), Expect = 7.3
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 194 VDASIIPVIPGGHTVAVVYMIAEKASDMIKKTWLP 228
VDAS+ V + +I + ++ K T+LP
Sbjct: 103 VDASV-AVFCEIQNTLINTLIRKHGTEEQKATYLP 136
>1b75_A Protein (50S ribosomal protein L25); RNA-binding protein, RNA
binding protein; NMR {Escherichia coli} SCOP: b.53.1.1
PDB: 1d6k_A 1dfu_P 1giy_V 1ml5_v* 1p85_T 1p86_T 1vs6_V
1vs8_V 1vt2_V 2aw4_V 2awb_V 2gya_T 2gyc_T 2i2t_V 2i2v_V
2j28_V 2qam_V* 2qao_V* 2qba_V* 2qbc_V* ...
Length = 94
Score = 25.2 bits (56), Expect = 8.3
Identities = 9/21 (42%), Positives = 11/21 (52%), Gaps = 2/21 (9%)
Query: 79 KVLLKD--SHPLTPPLIHANF 97
KV +D HP P L H +F
Sbjct: 71 KVKAQDVQRHPYKPKLQHIDF 91
>2b5i_C Cytokine receptor common gamma chain; four-helix bundle,
fibronectin domain, cytokine-cytokine REC complex; HET:
NAG; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB:
3bpl_C* 3qb7_C* 3qaz_C*
Length = 199
Score = 26.2 bits (57), Expect = 8.5
Identities = 11/61 (18%), Positives = 20/61 (32%), Gaps = 3/61 (4%)
Query: 128 STLHKAPIPGCSQYTFGSDAYWGCSVRHITTQLHHQ---CGTCKMGPRWDSSAVVDPQLK 184
+ CS Y F + GC ++ L+ PR ++ ++ Q
Sbjct: 37 KNSDNDKVQKCSHYLFSEEITSGCQLQKKEIHLYQTFVVQLQDPREPRRQATQMLKLQNL 96
Query: 185 V 185
V
Sbjct: 97 V 97
>1feu_A 50S ribosomal protein L25; general stress protein CTC, 5S
rRNA-protein complex, cadmium IONS, ribosome; 2.30A
{Thermus thermophilus} SCOP: b.53.1.1 PDB: 2j01_Z
1vsp_T 2hgj_Y 2hgq_Y 2hgu_Y 1vsa_T 2j03_Z 2jl6_Z 2jl8_Z
2v47_Z 2v49_Z 2wdi_Z 2wdj_Z 2wdl_Z 2wdn_Z 2wh2_Z 2wh4_Z
2wrj_Z 2wrl_Z 2wro_Z ...
Length = 206
Score = 26.2 bits (58), Expect = 9.1
Identities = 4/22 (18%), Positives = 7/22 (31%), Gaps = 2/22 (9%)
Query: 79 KVLLKD--SHPLTPPLIHANFF 98
L++ H +FF
Sbjct: 68 PTLVRQVNLDKRRRRPEHVDFF 89
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.429
Gapped
Lambda K H
0.267 0.0845 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,644,510
Number of extensions: 209317
Number of successful extensions: 427
Number of sequences better than 10.0: 1
Number of HSP's gapped: 399
Number of HSP's successfully gapped: 28
Length of query: 230
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 140
Effective length of database: 4,188,903
Effective search space: 586446420
Effective search space used: 586446420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.1 bits)