RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy759
(230 letters)
>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus
niger [TaxId: 5061]}
Length = 385
Score = 88.4 bits (218), Expect = 4e-21
Identities = 29/75 (38%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 156 ITTQLHHQCGTCKMGPRWDSSAVVDPQLKVYGVDNLRVVDASIIPVIPGGHTVAVVYMIA 215
I T + G C M P+ + VVD +VYGV LRV+D SI P H + V Y +A
Sbjct: 312 IDTVVDLPVGLCSMMPK-EMGGVVDNAARVYGVQGLRVIDGSIPPTQMSSHVMTVFYAMA 370
Query: 216 EKASDMIKKTWLPNQ 230
K SD I + + Q
Sbjct: 371 LKISDAILEDYASMQ 385
>d1cf3a2 d.16.1.1 (A:325-520) Glucose oxidase {Aspergillus niger
[TaxId: 5061]}
Length = 196
Score = 80.2 bits (197), Expect = 3e-19
Identities = 23/104 (22%), Positives = 39/104 (37%), Gaps = 6/104 (5%)
Query: 64 SWSIWPMILYPRSRGKVLLKDSHPLT-PPLIHANFFNDTRDLDVIVEGIKMAIELSKTKA 122
S+ +W L P +RG V + D P +F + DL ++A +S + A
Sbjct: 98 SFDVWD--LLPFTRGYVHILDKDPYLHHFAYDPQYFLNELDLLGQAAATQLARNISNSGA 155
Query: 123 FQSIGSTLHKAPIPGCSQYTFGSDAYWGCSVRHITTQLHHQCGT 166
Q+ IPG + + W + + +H GT
Sbjct: 156 MQTY---FAGETIPGDNLAYDADLSAWTEYIPYHFRPNYHGVGT 196
>d1gpea2 d.16.1.1 (A:329-524) Glucose oxidase {Penicillium
amagasakiense [TaxId: 63559]}
Length = 196
Score = 76.7 bits (188), Expect = 5e-18
Identities = 21/104 (20%), Positives = 36/104 (34%), Gaps = 6/104 (5%)
Query: 64 SWSIWPMILYPRSRGKVLLKDSHPLT-PPLIHANFFNDTRDLDVIVEGIKMAIELSKTKA 122
++ +W L P +RG V + S P FF + DL K+A +L+ A
Sbjct: 98 NFDLWD--LIPFTRGSVHILSSDPYLWQFANDPKFFLNEFDLLGQAAASKLARDLTSQGA 155
Query: 123 FQSIGSTLHKAPIPGCSQYTFGSDAYWGCSVRHITTQLHHQCGT 166
+ +PG + + + W V H +
Sbjct: 156 MKEY---FAGETLPGYNLVQNATLSQWSDYVLQNFRPNWHAVSS 196
>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of
flavocytochrome cellobiose dehydrogenase (CDH),
FAD-binding domain {Fungus (Phanerochaete chrysosporium)
[TaxId: 5306]}
Length = 360
Score = 78.9 bits (193), Expect = 8e-18
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 159 QLHHQCGTCKMGPRWDSSAVVDPQLKVYGVDNLRVVDASIIPVIPGGHTVAVVYMIAEKA 218
++ G +G SAVVD +KV+G +NL +VDA IIP +P G+ + AE+A
Sbjct: 291 WINLPVGMTTIGSS-PQSAVVDSNVKVFGTNNLFIVDAGIIPHLPTGNPQGTLMSAAEQA 349
Query: 219 SDMI 222
+ I
Sbjct: 350 AAKI 353
>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot
fungus (Peniophora sp. SG) [TaxId: 204723]}
Length = 379
Score = 71.9 bits (175), Expect = 2e-15
Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 1/84 (1%)
Query: 148 YWGCSVRHITTQLHHQCGTCKMGP-RWDSSAVVDPQLKVYGVDNLRVVDASIIPVIPGGH 206
G +L G+ +MG + + V+ +V+G NL + IP G +
Sbjct: 294 QLGRPNPTNPPELLPSLGSHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGAN 353
Query: 207 TVAVVYMIAEKASDMIKKTWLPNQ 230
+A K+ + IK+ + P+
Sbjct: 354 PTLTAMSLAIKSCEYIKQNFTPSP 377
>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium
amagasakiense [TaxId: 63559]}
Length = 391
Score = 71.9 bits (175), Expect = 2e-15
Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 156 ITTQLHHQCGTCKMGPRWDSSAVVDPQLKVYGVDNLRVVDASIIPVIPGGHTVAVVYMIA 215
+T L G C M R + VVD KVYG LRV+D SI P H + + Y +A
Sbjct: 318 VTQLLDLPVGICSMMSR-ELGGVVDATAKVYGTQGLRVIDGSIPPTQVSSHVMTIFYGMA 376
Query: 216 EKASDMIKKTW 226
K +D I +
Sbjct: 377 LKVADAILDDY 387
>d1ju2a2 d.16.1.1 (A:294-463) Hydroxynitrile lyase {Almond (Prunus
dulcis) [TaxId: 3755]}
Length = 170
Score = 64.4 bits (156), Expect = 1e-13
Identities = 30/152 (19%), Positives = 49/152 (32%), Gaps = 27/152 (17%)
Query: 39 VSLRQEMGITDHLYNSVYSSVDRKDSW-----------------SIWPMILYPRSRGKVL 81
++ +GI++ Y +SS+ + P S G +
Sbjct: 20 PTIVTVLGISNDFYQCSFSSLPFTTPPFGFFPSSSYPLPNSTFAHFASKVAGPLSYGSLT 79
Query: 82 LKDS-HPLTPPLIHANFFNDTRDLDVIVEGIKMAIELSKTKAFQSI-------GSTLHKA 133
LK S + P + N++++ DL V G+K EL T A + +
Sbjct: 80 LKSSSNVRVSPNVKFNYYSNLTDLSHCVSGMKKIGELLSTDALKPYKVEDLPGVEGFNIL 139
Query: 134 PIPGCSQYTFGSDAYWGCSVRHITTQLHHQCG 165
IP T DA + R H G
Sbjct: 140 GIPLPKDQT--DDAAFETFCRESVASYWHYHG 169
>d1kdga2 d.16.1.1 (A:513-693) Flavoprotein domain of flavocytochrome
cellobiose dehydrogenase (CDH), substrate-binding domain
{Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}
Length = 181
Score = 50.2 bits (119), Expect = 2e-08
Identities = 13/159 (8%), Positives = 43/159 (27%), Gaps = 30/159 (18%)
Query: 8 AYVNTKYNVFPDDLPDIEFIFTAVSLASDGGVSLRQEMGITDHLYNSVYSSVDRKDSWSI 67
Y+ + + + + + T +Y
Sbjct: 53 LNFWRAYSGSDGFTRYAQGTVRPGAASVNSSLPYNASQIFTITVY--------------- 97
Query: 68 WPMILYPRSRGKVLLKDSHPLTPPLIHANFFNDTRDLDVIVEGIKMAIELSKTKAFQSIG 127
+ +SRG++ + L ++ + + D V+++ + + + ++
Sbjct: 98 --LSTGIQSRGRIGIDA--ALRGTVLTPPWLVNPVDKTVLLQALHDVVSNIGSIPGLTM- 152
Query: 128 STLHKAPIPGCSQYTFGSDAYWGCSVRHITTQLHHQCGT 166
P +Q + + + T +H +
Sbjct: 153 ------ITPDVTQ----TLEEYVDAYDPATMNSNHWVSS 181
>d1su7a_ e.26.1.2 (A:) Ni-containing carbon monoxide dehydrogenase
{Carboxydothermus hydrogenoformans [TaxId: 129958]}
Length = 633
Score = 26.3 bits (58), Expect = 3.3
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 190 NLRVVDASIIPVIPGGHTVAVVYMIAEKASDMIKK 224
NL V+ A + V GH + +I + +M +
Sbjct: 242 NLGVLKADAVNVAVHGHNPVLSDIIVSVSKEMENE 276
>d1k62b_ a.127.1.1 (B:) Argininosuccinate lyase/delta-crystallin
{Human (Homo sapiens) [TaxId: 9606]}
Length = 459
Score = 26.4 bits (57), Expect = 3.6
Identities = 10/82 (12%), Positives = 19/82 (23%), Gaps = 4/82 (4%)
Query: 93 IHANFFNDTRDLDVIVEGIKMAIELSKTKAFQSIGSTLHKAPIPGCSQYTFGSDAYWGCS 152
+ + T L+ E I A E + + LH +D
Sbjct: 65 VAEEWAQGTFKLNSNDEDIHTANERRLKELIGATAGKLHTGR---SRNDQVVTDLRL-WM 120
Query: 153 VRHITTQLHHQCGTCKMGPRWD 174
+ +T +
Sbjct: 121 RQTCSTLSGLLWELIRTMVDRA 142
>d1kpta_ d.70.1.1 (A:) Virally encoded KP4 toxin {Ustilago maydis,
P4 strain [TaxId: 5270]}
Length = 105
Score = 24.4 bits (53), Expect = 5.9
Identities = 12/47 (25%), Positives = 21/47 (44%)
Query: 144 GSDAYWGCSVRHITTQLHHQCGTCKMGPRWDSSAVVDPQLKVYGVDN 190
+ + RH+T ++H C C P + + V QL V V++
Sbjct: 58 NNCISGTEACRHLTNLVNHGCRVCGSDPLYAGNDVSRGQLTVNYVNS 104
>d1i2aa_ e.24.1.1 (A:) Ribosomal protein L1 {Archaeon Methanococcus
jannaschii [TaxId: 2190]}
Length = 212
Score = 25.1 bits (54), Expect = 8.0
Identities = 9/25 (36%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 103 DLDVIVEGIKMAIELSKTKAF-QSI 126
D + +++ +K A EL+K + F QS
Sbjct: 2 DREALLQAVKEARELAKPRNFTQSF 26
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.137 0.429
Gapped
Lambda K H
0.267 0.0552 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 893,496
Number of extensions: 40039
Number of successful extensions: 112
Number of sequences better than 10.0: 1
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 16
Length of query: 230
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 148
Effective length of database: 1,281,736
Effective search space: 189696928
Effective search space used: 189696928
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.8 bits)