BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7590
(358 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B8Z|A Chain A, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
pdb|4B8Z|B Chain B, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
pdb|4B8Z|C Chain C, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
pdb|4B8Z|D Chain D, Crystal Structure Of Human Gdp-l-fucose Synthase With
Bound Nadp And Gdp, Rhombohedral Crystal Form
Length = 320
Score = 383 bits (983), Expect = e-107, Method: Compositional matrix adjust.
Identities = 190/351 (54%), Positives = 231/351 (65%), Gaps = 40/351 (11%)
Query: 7 ILVTGGTGLVGXXXXXXXXXXXXRDDETWIFVSSKEADLSNLESTQQLFSKYKPTHVIHL 66
ILVTGG+GLVG E W+FVSSK+ADL++ T+ LF K +PTHVIHL
Sbjct: 10 ILVTGGSGLVGKAIQKVVADGAGLPGEDWVFVSSKDADLTDTAQTRALFEKVQPTHVIHL 69
Query: 67 AAMVGGLFHNMSHNLDFFRVNMKINDNVLDTSYKQGVKKVVSCLSTCIFPDKTTYPIDET 126
AAMVGGLF N+ +NLDF+R N+ +NDNVL ++++ G +KVVSCLSTCIFPDKTTYPIDET
Sbjct: 70 AAMVGGLFRNIKYNLDFWRKNVHMNDNVLHSAFEVGARKVVSCLSTCIFPDKTTYPIDET 129
Query: 127 MVHNGPPHPSNFGYSHAKRMLDVLNKAYYQQHGVTYTSVIPCNVFGPHDNYNLESSHVIP 186
M+HNGPPH SNFGYS+AKRM+DV N+AY+QQ+G T+T+VIP NVFGPHDN+N+E HV+P
Sbjct: 130 MIHNGPPHNSNFGYSYAKRMIDVQNRAYFQQYGCTFTAVIPTNVFGPHDNFNIEDGHVLP 189
Query: 187 GLIRKLYDTIEKGKDQSVFESRARFPPGANSFGLDKLDLIPFSLFPFCFTGGDEFKVLGT 246
GLI K++ + G V GT
Sbjct: 190 GLIHKVH---------------------------------------LAKSSGSALTVWGT 210
Query: 247 GKPLRQFIYSLDLARLFIWVLREYDSVEPIILSVDEKDXXXXXXXXXXXXXXFQFKGRIT 306
G P RQFIYSLDLA+LFIWVLREY+ VEPIILSV E+D F G +T
Sbjct: 211 GNPRRQFIYSLDLAQLFIWVLREYNEVEPIILSVGEEDEVSIKEAAEAVVEAMDFHGEVT 270
Query: 307 FDTNAADGQLKKTASNRKLRELRGPGFEFTPFQQAVQESVAWFRENHSVAR 357
FDT +DGQ KKTASN KLR P F FTPF+QAV+E+ AWF +N+ AR
Sbjct: 271 FDTTKSDGQFKKTASNSKLRTYL-PDFRFTPFKQAVKETCAWFTDNYEQAR 320
>pdb|4B8W|A Chain A, Crystal Structure Of Human Gdp-L-Fucose Synthase With
Bound Nadp And Gdp, Tetragonal Crystal Form
pdb|4B8W|B Chain B, Crystal Structure Of Human Gdp-L-Fucose Synthase With
Bound Nadp And Gdp, Tetragonal Crystal Form
Length = 319
Score = 383 bits (983), Expect = e-107, Method: Compositional matrix adjust.
Identities = 190/351 (54%), Positives = 231/351 (65%), Gaps = 40/351 (11%)
Query: 7 ILVTGGTGLVGXXXXXXXXXXXXRDDETWIFVSSKEADLSNLESTQQLFSKYKPTHVIHL 66
ILVTGG+GLVG E W+FVSSK+ADL++ T+ LF K +PTHVIHL
Sbjct: 9 ILVTGGSGLVGKAIQKVVADGAGLPGEDWVFVSSKDADLTDTAQTRALFEKVQPTHVIHL 68
Query: 67 AAMVGGLFHNMSHNLDFFRVNMKINDNVLDTSYKQGVKKVVSCLSTCIFPDKTTYPIDET 126
AAMVGGLF N+ +NLDF+R N+ +NDNVL ++++ G +KVVSCLSTCIFPDKTTYPIDET
Sbjct: 69 AAMVGGLFRNIKYNLDFWRKNVHMNDNVLHSAFEVGARKVVSCLSTCIFPDKTTYPIDET 128
Query: 127 MVHNGPPHPSNFGYSHAKRMLDVLNKAYYQQHGVTYTSVIPCNVFGPHDNYNLESSHVIP 186
M+HNGPPH SNFGYS+AKRM+DV N+AY+QQ+G T+T+VIP NVFGPHDN+N+E HV+P
Sbjct: 129 MIHNGPPHNSNFGYSYAKRMIDVQNRAYFQQYGCTFTAVIPTNVFGPHDNFNIEDGHVLP 188
Query: 187 GLIRKLYDTIEKGKDQSVFESRARFPPGANSFGLDKLDLIPFSLFPFCFTGGDEFKVLGT 246
GLI K++ + G V GT
Sbjct: 189 GLIHKVH---------------------------------------LAKSSGSALTVWGT 209
Query: 247 GKPLRQFIYSLDLARLFIWVLREYDSVEPIILSVDEKDXXXXXXXXXXXXXXFQFKGRIT 306
G P RQFIYSLDLA+LFIWVLREY+ VEPIILSV E+D F G +T
Sbjct: 210 GNPRRQFIYSLDLAQLFIWVLREYNEVEPIILSVGEEDEVSIKEAAEAVVEAMDFHGEVT 269
Query: 307 FDTNAADGQLKKTASNRKLRELRGPGFEFTPFQQAVQESVAWFRENHSVAR 357
FDT +DGQ KKTASN KLR P F FTPF+QAV+E+ AWF +N+ AR
Sbjct: 270 FDTTKSDGQFKKTASNSKLRTYL-PDFRFTPFKQAVKETCAWFTDNYEQAR 319
>pdb|1E6U|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase
Length = 321
Score = 120 bits (300), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 90/360 (25%), Positives = 160/360 (44%), Gaps = 53/360 (14%)
Query: 1 MAEEKIILVTGGTGLVGXXXXXXXXXXXXRDDETWIFVSSKEADLSNLESTQQLFSKYKP 60
MA++++ + G G+VG R D + + E +L + + F+ +
Sbjct: 1 MAKQRV-FIAGHRGMVGSAIRRQLEQ---RGDVELVLRTRDELNLLDSRAVHDFFASERI 56
Query: 61 THVIHLAAMVGGLFHNMSHNLDFFRVNMKINDNVLDTSYKQGVKKVVSCLSTCIFPDKTT 120
V AA VGG+ N ++ DF NM I N++ +++ V K++ S+CI+P
Sbjct: 57 DQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAK 116
Query: 121 YPIDETMVHNGPPHPSNFGYSHAKRMLDVLNKAYYQQHGVTYTSVIPCNVFGPHDNYNLE 180
P+ E+ + G P+N Y+ AK L ++Y +Q+G Y SV+P N++GPHDN++
Sbjct: 117 QPMAESELLQGTLEPTNEPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPS 176
Query: 181 SSHVIPGLIRKLYD-TIEKGKDQSVFESRARFPPGANSFGLDKLDLIPFSLFPFCFTGGD 239
+SHVIP L+R+ ++ T +K D V+
Sbjct: 177 NSHVIPALLRRFHEATAQKAPDVVVW---------------------------------- 202
Query: 240 EFKVLGTGKPLRQFIYSLDLARLFIWVLR-----EYDSVEPII--LSVDEKDXXXXXXXX 292
G+G P+R+F++ D+A I V+ ++ +P++ ++V
Sbjct: 203 -----GSGTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELA 257
Query: 293 XXXXXXFQFKGRITFDTNAADGQLKKTASNRKLRELRGPGFEFTPFQQAVQESVAWFREN 352
+KGR+ FD + DG +K +L +L G E + + + + WF EN
Sbjct: 258 QTIAKVVGYKGRVVFDASKPDGTPRKLLDVTRLHQL-GWYHEIS-LEAGLASTYQWFLEN 315
>pdb|1E7Q|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase S107a
Length = 321
Score = 119 bits (297), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 88/359 (24%), Positives = 160/359 (44%), Gaps = 51/359 (14%)
Query: 1 MAEEKIILVTGGTGLVGXXXXXXXXXXXXRDDETWIFVSSKEADLSNLESTQQLFSKYKP 60
MA++++ + G G+VG R D + + E +L + + F+ +
Sbjct: 1 MAKQRV-FIAGHRGMVGSAIRRQLEQ---RGDVELVLRTRDELNLLDSRAVHDFFASERI 56
Query: 61 THVIHLAAMVGGLFHNMSHNLDFFRVNMKINDNVLDTSYKQGVKKVVSCLSTCIFPDKTT 120
V AA VGG+ N ++ DF NM I N++ +++ V K++ ++CI+P
Sbjct: 57 DQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGASCIYPKLAK 116
Query: 121 YPIDETMVHNGPPHPSNFGYSHAKRMLDVLNKAYYQQHGVTYTSVIPCNVFGPHDNYNLE 180
P+ E+ + G P+N Y+ AK L ++Y +Q+G Y SV+P N++GPHDN++
Sbjct: 117 QPMAESELLQGTLEPTNEPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPS 176
Query: 181 SSHVIPGLIRKLYDTIEKGKDQSVFESRARFPPGANSFGLDKLDLIPFSLFPFCFTGGDE 240
+SHVIP L+R+ + E+ A+ P D++
Sbjct: 177 NSHVIPALLRRFH------------EATAQSAP----------DVV-------------- 200
Query: 241 FKVLGTGKPLRQFIYSLDLARLFIWVLR-----EYDSVEPII--LSVDEKDXXXXXXXXX 293
V G+G P+R+F++ D+A I V+ ++ +P++ ++V
Sbjct: 201 --VWGSGTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQ 258
Query: 294 XXXXXFQFKGRITFDTNAADGQLKKTASNRKLRELRGPGFEFTPFQQAVQESVAWFREN 352
+KGR+ FD + DG +K +L +L + + + + WF EN
Sbjct: 259 TIAKVVGYKGRVVFDASKPDGTPRKLLDVTRLHQL--GWYHEISLEAGLASTYQWFLEN 315
>pdb|1BSV|A Chain A, Gdp-Fucose Synthetase From Escherichia Coli Complex With
Nadph
pdb|1FXS|A Chain A, Gdp-fucose Synthetase From Escherichia Coli Complex With
Nadp
pdb|1GFS|A Chain A, Gdp-Fucose Synthetase From E. Coli
Length = 321
Score = 118 bits (295), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 89/353 (25%), Positives = 157/353 (44%), Gaps = 50/353 (14%)
Query: 7 ILVTGGTGLVGXXXXXXXXXXXXRDDETWIFVSSKEADLSNLESTQQLFSKYKPTHVIHL 66
+ + G G+VG R D + + E +L + + F+ + V
Sbjct: 6 VFIAGHRGMVGSAIRRQLEQ---RGDVELVLRTRDELNLLDSRAVHDFFASERIDQVYLA 62
Query: 67 AAMVGGLFHNMSHNLDFFRVNMKINDNVLDTSYKQGVKKVVSCLSTCIFPDKTTYPIDET 126
AA VGG+ N ++ DF NM I N++ +++ V K++ S+CI+P P+ E+
Sbjct: 63 AAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAES 122
Query: 127 MVHNGPPHPSNFGYSHAKRMLDVLNKAYYQQHGVTYTSVIPCNVFGPHDNYNLESSHVIP 186
+ G P+N Y+ AK L ++Y +Q+G Y SV+P N++GPHDN++ +SHVIP
Sbjct: 123 ELLQGTLEPTNEPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIP 182
Query: 187 GLIRKLYDTIEKGKDQSVFESRARFPPGANSFGLDKLDLIPFSLFPFCFTGGDEFKVLGT 246
L+R+ + E+ A+ P D++ V G+
Sbjct: 183 ALLRRFH------------EATAQNAP----------DVV----------------VWGS 204
Query: 247 GKPLRQFIYSLDLARLFIWVLR-----EYDSVEPII--LSVDEKDXXXXXXXXXXXXXXF 299
G P+R+F++ D+A I V+ ++ +P++ ++V
Sbjct: 205 GTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVV 264
Query: 300 QFKGRITFDTNAADGQLKKTASNRKLRELRGPGFEFTPFQQAVQESVAWFREN 352
+KGR+ FD + DG +K +L +L G E + + + + WF EN
Sbjct: 265 GYKGRVVFDASKPDGTPRKLLDVTRLHQL-GWYHEIS-LEAGLASTYQWFLEN 315
>pdb|1BWS|A Chain A, Crystal Structure Of Gdp-4-Keto-6-Deoxy-D-Mannose
EpimeraseREDUCTASE From Escherichia Coli A Key Enzyme In
The Biosynthesis Of Gdp-L- Fucose
Length = 321
Score = 118 bits (295), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 88/353 (24%), Positives = 155/353 (43%), Gaps = 50/353 (14%)
Query: 7 ILVTGGTGLVGXXXXXXXXXXXXRDDETWIFVSSKEADLSNLESTQQLFSKYKPTHVIHL 66
+ + G G+VG R D + + E +L + + F+ + V
Sbjct: 6 VFIAGHRGMVGSAIRRQLEQ---RGDVELVLRTRDELNLLDSRAVHDFFASERIDQVYLA 62
Query: 67 AAMVGGLFHNMSHNLDFFRVNMKINDNVLDTSYKQGVKKVVSCLSTCIFPDKTTYPIDET 126
AA VGG+ N ++ DF NM I N++ +++ V K++ S+CI+P P+ E+
Sbjct: 63 AAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAES 122
Query: 127 MVHNGPPHPSNFGYSHAKRMLDVLNKAYYQQHGVTYTSVIPCNVFGPHDNYNLESSHVIP 186
+ G P+N Y+ AK L ++Y +Q+G Y SV+P N++GPHDN++ +SHVIP
Sbjct: 123 ELLQGTLEPTNEPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIP 182
Query: 187 GLIRKLYDTIEKGKDQSVFESRARFPPGANSFGLDKLDLIPFSLFPFCFTGGDEFKVLGT 246
L+R+ + E+ A+ P + V G+
Sbjct: 183 ALLRRFH------------EATAQNAP--------------------------DVVVWGS 204
Query: 247 GKPLRQFIYSLDLARLFIWVLR-----EYDSVEPII--LSVDEKDXXXXXXXXXXXXXXF 299
G P+R+F++ D+A I V+ ++ +P++ ++V
Sbjct: 205 GTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRDLAQTIAKVV 264
Query: 300 QFKGRITFDTNAADGQLKKTASNRKLRELRGPGFEFTPFQQAVQESVAWFREN 352
+KGR+ FD + DG +K +L +L G E + + + + WF EN
Sbjct: 265 GYKGRVVFDASKPDGTPRKLLDVTRLHQL-GWYHEIS-LEAGLASTYQWFLEN 315
>pdb|1E7S|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase K140r
Length = 321
Score = 117 bits (294), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 88/353 (24%), Positives = 157/353 (44%), Gaps = 50/353 (14%)
Query: 7 ILVTGGTGLVGXXXXXXXXXXXXRDDETWIFVSSKEADLSNLESTQQLFSKYKPTHVIHL 66
+ + G G+VG R D + + E +L + + F+ + V
Sbjct: 6 VFIAGHRGMVGSAIRRQLEQ---RGDVELVLRTRDELNLLDSRAVHDFFASERIDQVYLA 62
Query: 67 AAMVGGLFHNMSHNLDFFRVNMKINDNVLDTSYKQGVKKVVSCLSTCIFPDKTTYPIDET 126
AA VGG+ N ++ DF NM I N++ +++ V K++ S+CI+P P+ E+
Sbjct: 63 AAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAES 122
Query: 127 MVHNGPPHPSNFGYSHAKRMLDVLNKAYYQQHGVTYTSVIPCNVFGPHDNYNLESSHVIP 186
+ G P+N Y+ A+ L ++Y +Q+G Y SV+P N++GPHDN++ +SHVIP
Sbjct: 123 ELLQGTLEPTNEPYAIARIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIP 182
Query: 187 GLIRKLYDTIEKGKDQSVFESRARFPPGANSFGLDKLDLIPFSLFPFCFTGGDEFKVLGT 246
L+R+ + E+ A+ P D++ V G+
Sbjct: 183 ALLRRFH------------EATAQSAP----------DVV----------------VWGS 204
Query: 247 GKPLRQFIYSLDLARLFIWVLR-----EYDSVEPII--LSVDEKDXXXXXXXXXXXXXXF 299
G P+R+F++ D+A I V+ ++ +P++ ++V
Sbjct: 205 GTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVV 264
Query: 300 QFKGRITFDTNAADGQLKKTASNRKLRELRGPGFEFTPFQQAVQESVAWFREN 352
+KGR+ FD + DG +K +L +L G E + + + + WF EN
Sbjct: 265 GYKGRVVFDASKPDGTPRKLLDVTRLHQL-GWYHEIS-LEAGLASTYQWFLEN 315
>pdb|1E7R|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase Y136e
Length = 321
Score = 115 bits (288), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 88/353 (24%), Positives = 156/353 (44%), Gaps = 50/353 (14%)
Query: 7 ILVTGGTGLVGXXXXXXXXXXXXRDDETWIFVSSKEADLSNLESTQQLFSKYKPTHVIHL 66
+ + G G+VG R D + + E +L + + F+ + V
Sbjct: 6 VFIAGHRGMVGSAIRRQLEQ---RGDVELVLRTRDELNLLDSRAVHDFFASERIDQVYLA 62
Query: 67 AAMVGGLFHNMSHNLDFFRVNMKINDNVLDTSYKQGVKKVVSCLSTCIFPDKTTYPIDET 126
AA VGG+ N ++ DF NM I N++ +++ V K++ S+CI+P P+ E+
Sbjct: 63 AAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAES 122
Query: 127 MVHNGPPHPSNFGYSHAKRMLDVLNKAYYQQHGVTYTSVIPCNVFGPHDNYNLESSHVIP 186
+ G P+N + AK L ++Y +Q+G Y SV+P N++GPHDN++ +SHVIP
Sbjct: 123 ELLQGTLEPTNEPEAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIP 182
Query: 187 GLIRKLYDTIEKGKDQSVFESRARFPPGANSFGLDKLDLIPFSLFPFCFTGGDEFKVLGT 246
L+R+ + E+ A+ P D++ V G+
Sbjct: 183 ALLRRFH------------EATAQSAP----------DVV----------------VWGS 204
Query: 247 GKPLRQFIYSLDLARLFIWVLR-----EYDSVEPII--LSVDEKDXXXXXXXXXXXXXXF 299
G P+R+F++ D+A I V+ ++ +P++ ++V
Sbjct: 205 GTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVV 264
Query: 300 QFKGRITFDTNAADGQLKKTASNRKLRELRGPGFEFTPFQQAVQESVAWFREN 352
+KGR+ FD + DG +K +L +L G E + + + + WF EN
Sbjct: 265 GYKGRVVFDASKPDGTPRKLLDVTRLHQL-GWYHEIS-LEAGLASTYQWFLEN 315
>pdb|1I3K|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3K|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
Length = 348
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 1/98 (1%)
Query: 38 VSSKEADLSNLESTQQLFSKYKPTHVIHLAAMVGGLFHNMSHNLDFFRVNMKINDNVLDT 97
V +E D+ + + Q+LF KY VIH A + + ++ LD++RVN+ +L+
Sbjct: 60 VEFEEMDILDQGALQRLFKKYSFMAVIHFAGLKA-MGESVQKPLDYYRVNLTGTIQLLEI 118
Query: 98 SYKQGVKKVVSCLSTCIFPDKTTYPIDETMVHNGPPHP 135
GVK +V S ++ + P+DE G +P
Sbjct: 119 MKAHGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNP 156
>pdb|1EK5|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase In Complex
With Nad+
pdb|1EK6|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
pdb|1EK6|B Chain B, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
Length = 348
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 1/98 (1%)
Query: 38 VSSKEADLSNLESTQQLFSKYKPTHVIHLAAMVGGLFHNMSHNLDFFRVNMKINDNVLDT 97
V +E D+ + + Q+LF KY VIH A + + ++ LD++RVN+ +L+
Sbjct: 60 VEFEEMDILDQGALQRLFKKYSFMAVIHFAGLKA-VGESVQKPLDYYRVNLTGTIQLLEI 118
Query: 98 SYKQGVKKVVSCLSTCIFPDKTTYPIDETMVHNGPPHP 135
GVK +V S ++ + P+DE G +P
Sbjct: 119 MKAHGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNP 156
>pdb|1HZJ|A Chain A, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
pdb|1HZJ|B Chain B, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
Length = 348
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 1/98 (1%)
Query: 38 VSSKEADLSNLESTQQLFSKYKPTHVIHLAAMVGGLFHNMSHNLDFFRVNMKINDNVLDT 97
V +E D+ + + Q+LF KY VIH A + + ++ LD++RVN+ +L+
Sbjct: 60 VEFEEMDILDQGALQRLFKKYSFMAVIHFAGLKA-VGESVQKPLDYYRVNLTGTIQLLEI 118
Query: 98 SYKQGVKKVVSCLSTCIFPDKTTYPIDETMVHNGPPHP 135
GVK +V S ++ + P+DE G +P
Sbjct: 119 MKAHGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNP 156
>pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5Y|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-glucose
4- Epimerase Complex With Nad
Length = 311
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 75/169 (44%), Gaps = 13/169 (7%)
Query: 44 DLSNLESTQQLFSKYKPTHVIHLAAMVGGLFHNMSHNLDFFRVNMKINDNVLDTSYKQGV 103
DL + E ++ F +++PTHV H AA LD F VN+ N+L+ + GV
Sbjct: 51 DLRDKEGVERAFREFRPTHVSHQAAQASVKVSVEDPVLD-FEVNLLGGLNLLEACRQYGV 109
Query: 104 KKVV-SCLSTCIFPDKTTYPIDETMVHNGPPHPSNFGYSHAKRMLDVLNKAYYQQHGVTY 162
+K+V + I+ + P E PP P + Y+ +K + Y Q +G+ +
Sbjct: 110 EKLVFASTGGAIYGE---VPEGERAEETWPPRPKS-PYAASKAAFEHYLSVYGQSYGLKW 165
Query: 163 TSVIPCNVFGPHDNYNLESS-------HVIPGLIRKLYDTIEKGKDQSV 204
S+ NV+GP + + E+ V+ GL LY G + V
Sbjct: 166 VSLRYGNVYGPRQDPHGEAGVVAIFAERVLKGLPVTLYARKTPGDEGCV 214
>pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose
MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces
Cerevisiae Complexed With Nad, Udp-Glucose, And
Galactose
Length = 699
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 64/295 (21%), Positives = 108/295 (36%), Gaps = 74/295 (25%)
Query: 5 KIILVTGGTGLVGXXXX------------XXXXXXXXRDDETWIFVSSK------EADLS 46
KI+LVTGG G +G D + V +K E DL
Sbjct: 12 KIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLC 71
Query: 47 NLESTQQLFSKYKPTHVIHLAAMVGGLFHNMSHNLDFFRVNMKINDNVLDTSYKQGVKKV 106
+ + +++F +YK VIH A + + + L ++ N+ +L+ + V K
Sbjct: 72 DRKGLEKVFKEYKIDSVIHFAGL-KAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKF 130
Query: 107 VSCLSTCIFPDKTTYPIDETMVHNGPPHPSNFGYSHAKRMLDVLNKAYYQQHGVTYTSVI 166
V S ++ D T +P + P P+N Y H K
Sbjct: 131 VFSSSATVYGDATRFPNMIPIPEECPLGPTN-PYGHTK---------------------- 167
Query: 167 PCNVFGPHDNYNLESSHVIPGLIRKLYDTIEKGKDQSVFESRARFPPGANSFGLDKLDL- 225
+ I ++ LY++ +K ++ R P GA+ GL D
Sbjct: 168 ----------------YAIENILNDLYNSDKKSWKFAIL--RYFNPIGAHPSGLIGEDPL 209
Query: 226 -IPFSLFPF-----------CFTGGDEFKVLGTGKPLRQFIYSLDLARLFIWVLR 268
IP +L P+ + GD++ G P+R +I+ +DLA+ I L+
Sbjct: 210 GIPNNLLPYMAQVAVGRREKLYIFGDDYDSR-DGTPIRDYIHVVDLAKGHIAALQ 263
>pdb|2C59|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site.
pdb|2C59|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site
Length = 379
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 61/143 (42%), Gaps = 10/143 (6%)
Query: 62 HVIHLAAMVGGL-FHNMSHNLDFFRVNMKINDNVLDTSYKQGVKKVVSCLSTCIFP---- 116
HV +LAA +GG+ F +H++ + N I+ N+++ + G+K+ S CI+P
Sbjct: 96 HVFNLAADMGGMGFIQSNHSVIMYN-NTMISFNMIEAARINGIKRFFYASSACIYPEFKQ 154
Query: 117 -DKTTYPIDETMVHNGPPHPSNFGYSHAKRMLDVLNKAYYQQHGVTYTSVIPCNVFGPHD 175
+ T + E+ P P + Y K + L K Y + G+ N++GP
Sbjct: 155 LETTNVSLKESDAW--PAEPQD-AYGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFG 211
Query: 176 NYNLESSHVIPGLIRKLYDTIEK 198
+ RK + ++
Sbjct: 212 TWKGGREKAPAAFCRKAQTSTDR 234
>pdb|2C5E|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active
Site.
pdb|2C5E|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active Site
Length = 379
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 10/118 (8%)
Query: 62 HVIHLAAMVGGL-FHNMSHNLDFFRVNMKINDNVLDTSYKQGVKKVVSCLSTCIFP---- 116
HV +LAA +GG+ F +H++ + N I+ N+++ + G+K+ S CI+P
Sbjct: 96 HVFNLAADMGGMGFIQSNHSVIMYN-NTMISFNMIEAARINGIKRFFYASSACIYPEFKQ 154
Query: 117 -DKTTYPIDETMVHNGPPHPSNFGYSHAKRMLDVLNKAYYQQHGVTYTSVIPCNVFGP 173
+ T + E+ P P + Y K + L K Y + G+ N++GP
Sbjct: 155 LETTNVSLKESDAW--PAEPQD-AYGLEKLATEELCKHYNKDFGIECRIGRFHNIYGP 209
>pdb|2C54|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site.
pdb|2C54|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site
Length = 379
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 61/143 (42%), Gaps = 10/143 (6%)
Query: 62 HVIHLAAMVGGL-FHNMSHNLDFFRVNMKINDNVLDTSYKQGVKKVVSCLSTCIFP---- 116
HV +LAA +GG+ F +H++ + N I+ N+++ + G+K+ S CI+P
Sbjct: 96 HVFNLAADMGGMGFIQSNHSVIMYN-NTMISFNMIEAARINGIKRFFYASSACIYPEFKQ 154
Query: 117 -DKTTYPIDETMVHNGPPHPSNFGYSHAKRMLDVLNKAYYQQHGVTYTSVIPCNVFGPHD 175
+ T + E+ P P + Y + + L K Y + G+ N++GP
Sbjct: 155 LETTNVSLKESDAW--PAEPQD-AYGLERLATEELCKHYNKDFGIECRIGRFHNIYGPFG 211
Query: 176 NYNLESSHVIPGLIRKLYDTIEK 198
+ RK + ++
Sbjct: 212 TWKGGREKAPAAFCRKAQTSTDR 234
>pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|B Chain B, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|C Chain C, Structure Of Udp-Galactose 4-Epimerase Mutant
Length = 308
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 5/91 (5%)
Query: 84 FRVNMKINDNVLDTSYKQGVKKVVSCLSTCIFPDKTTYPIDETMVHNGPPHPSNFGYSHA 143
F N+ NVL+ + + GV+ VV S+ ++ D P E P+ Y A
Sbjct: 82 FNENVVATFNVLEWARQTGVRTVVFASSSTVYGDADVIPTPEE-----EPYKPISVYGAA 136
Query: 144 KRMLDVLNKAYYQQHGVTYTSVIPCNVFGPH 174
K +V+ Y + GV +V NV GP
Sbjct: 137 KAAGEVMCATYARLFGVRCLAVRYANVVGPR 167
>pdb|2C5A|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
pdb|2C5A|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
Length = 379
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 61/143 (42%), Gaps = 10/143 (6%)
Query: 62 HVIHLAAMVGGL-FHNMSHNLDFFRVNMKINDNVLDTSYKQGVKKVVSCLSTCIFP---- 116
HV +LAA +GG+ F +H++ + N I+ N+++ + G+K+ S CI+P
Sbjct: 96 HVFNLAADMGGMGFIQSNHSVIMYN-NTMISFNMIEAARINGIKRFFYASSACIYPEFKQ 154
Query: 117 -DKTTYPIDETMVHNGPPHPSNFGYSHAKRMLDVLNKAYYQQHGVTYTSVIPCNVFGPHD 175
+ T + E+ P + FG K + L K Y + G+ N++GP
Sbjct: 155 LETTNVSLKESDAWPAEPQDA-FGLE--KLATEELCKHYNKDFGIECRIGRFHNIYGPFG 211
Query: 176 NYNLESSHVIPGLIRKLYDTIEK 198
+ RK + ++
Sbjct: 212 TWKGGREKAPAAFCRKAQTSTDR 234
>pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
pdb|3KO8|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
Length = 312
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 5/91 (5%)
Query: 84 FRVNMKINDNVLDTSYKQGVKKVVSCLSTCIFPDKTTYPIDETMVHNGPPHPSNFGYSHA 143
F N+ NVL+ + + GV+ VV S+ ++ D P E P+ Y A
Sbjct: 86 FNENVVATFNVLEWARQTGVRTVVFASSSTVYGDADVIPTPEE-----EPYKPISVYGAA 140
Query: 144 KRMLDVLNKAYYQQHGVTYTSVIPCNVFGPH 174
K +V+ Y + GV +V NV GP
Sbjct: 141 KAAGEVMCATYARLFGVRCLAVRYANVVGPR 171
>pdb|2PZK|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad
pdb|2PZK|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad
pdb|2PZL|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZL|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZM|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
pdb|2PZM|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmg In Complex With Nad And Udp
Length = 330
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 60/138 (43%), Gaps = 15/138 (10%)
Query: 38 VSSKEADLSNLESTQQLFSKYKPTHVIHLAAMVGGLFHNMSHNLDFFRVNMKINDNVLDT 97
+S E +++ ++ F +KPTHV+H AA + + + N++ + NV
Sbjct: 67 LSVIEGSVTDAGLLERAFDSFKPTHVVHSAAA----YKDPDDWAEDAATNVQGSINVAKA 122
Query: 98 SYKQGVKKVVSCLSTCIFPDKTTYPIDETMVHNGPPHP-SNFGYSHAKRMLDVLNKAYYQ 156
+ K GVK++++ + + T PI + P P +++G S +A+
Sbjct: 123 ASKAGVKRLLNFQTALCYGRPATVPIP----IDSPTAPFTSYGISKTA------GEAFLM 172
Query: 157 QHGVTYTSVIPCNVFGPH 174
V S+ NV GP
Sbjct: 173 MSDVPVVSLRLANVTGPR 190
>pdb|1Z73|A Chain A, Crystal Structure Of E. Coli Arna Dehydrogenase
(decarboxylase) Domain, S433a Mutant
Length = 358
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 9/84 (10%)
Query: 131 GPPHPSNFGYSHAKRMLDVLNKAYYQQHGVTYTSVIPCNVFGPH-DNYN---LESSHVIP 186
GP + + YS +K++LD + AY ++ G+ +T P N GP DN N + SS I
Sbjct: 152 GPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAIT 211
Query: 187 GLIRKLYD-----TIEKGKDQSVF 205
LI L + I+ GK + F
Sbjct: 212 QLILNLVEGSPIKLIDGGKQKRCF 235
>pdb|2BLL|A Chain A, Apo-Structure Of The C-Terminal Decarboxylase Domain Of
Arna
Length = 345
Score = 35.4 bits (80), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 9/84 (10%)
Query: 131 GPPHPSNFGYSHAKRMLDVLNKAYYQQHGVTYTSVIPCNVFGPH-DNYN---LESSHVIP 186
GP + + YS +K++LD + AY ++ G+ +T P N GP DN N + SS I
Sbjct: 139 GPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAIT 198
Query: 187 GLIRKLYD-----TIEKGKDQSVF 205
LI L + I+ GK + F
Sbjct: 199 QLILNLVEGSPIKLIDGGKQKRCF 222
>pdb|1Z75|A Chain A, Crystal Structure Of Arna Dehydrogenase (decarboxylase)
Domain, R619m Mutant
Length = 358
Score = 35.4 bits (80), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 9/84 (10%)
Query: 131 GPPHPSNFGYSHAKRMLDVLNKAYYQQHGVTYTSVIPCNVFGPH-DNYN---LESSHVIP 186
GP + + YS +K++LD + AY ++ G+ +T P N GP DN N + SS I
Sbjct: 152 GPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAIT 211
Query: 187 GLIRKLYD-----TIEKGKDQSVF 205
LI L + I+ GK + F
Sbjct: 212 QLILNLVEGSPIKLIDGGKQKRCF 235
>pdb|1Z7B|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619e Mutant
Length = 358
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 9/84 (10%)
Query: 131 GPPHPSNFGYSHAKRMLDVLNKAYYQQHGVTYTSVIPCNVFGPH-DNYN---LESSHVIP 186
GP + + YS +K++LD + AY ++ G+ +T P N GP DN N + SS I
Sbjct: 152 GPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAIT 211
Query: 187 GLIRKLYD-----TIEKGKDQSVF 205
LI L + I+ GK + F
Sbjct: 212 QLILNLVEGSPIKLIDGGKQKRCF 235
>pdb|1U9J|A Chain A, Crystal Structure Of E. Coli Arna (Pmri) Decarboxylase
Domain
Length = 358
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 9/84 (10%)
Query: 131 GPPHPSNFGYSHAKRMLDVLNKAYYQQHGVTYTSVIPCNVFGPH-DNYN---LESSHVIP 186
GP + + YS +K++LD + AY ++ G+ +T P N GP DN N + SS I
Sbjct: 152 GPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAIT 211
Query: 187 GLIRKLYD-----TIEKGKDQSVF 205
LI L + I+ GK + F
Sbjct: 212 QLILNLVEGSPIKLIDGGKQKRCF 235
>pdb|1Z74|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619y Mutant
Length = 358
Score = 35.4 bits (80), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 9/84 (10%)
Query: 131 GPPHPSNFGYSHAKRMLDVLNKAYYQQHGVTYTSVIPCNVFGPH-DNYN---LESSHVIP 186
GP + + YS +K++LD + AY ++ G+ +T P N GP DN N + SS I
Sbjct: 152 GPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAIT 211
Query: 187 GLIRKLYD-----TIEKGKDQSVF 205
LI L + I+ GK + F
Sbjct: 212 QLILNLVEGSPIKLIDGGKQKRCF 235
>pdb|1Z7E|A Chain A, Crystal Structure Of Full Length Arna
pdb|1Z7E|B Chain B, Crystal Structure Of Full Length Arna
pdb|1Z7E|C Chain C, Crystal Structure Of Full Length Arna
pdb|1Z7E|D Chain D, Crystal Structure Of Full Length Arna
pdb|1Z7E|E Chain E, Crystal Structure Of Full Length Arna
pdb|1Z7E|F Chain F, Crystal Structure Of Full Length Arna
Length = 660
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 9/84 (10%)
Query: 131 GPPHPSNFGYSHAKRMLDVLNKAYYQQHGVTYTSVIPCNVFGPH-DNYN---LESSHVIP 186
GP + + YS +K++LD + AY ++ G+ +T P N GP DN N + SS I
Sbjct: 454 GPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAIT 513
Query: 187 GLIRKLYD-----TIEKGKDQSVF 205
LI L + I+ GK + F
Sbjct: 514 QLILNLVEGSPIKLIDGGKQKRCF 537
>pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydratase)
From Streptomyces Venezuelae With Nad And Tyd Bound
Length = 337
Score = 35.4 bits (80), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 47/112 (41%), Gaps = 9/112 (8%)
Query: 83 FFRVNMKINDNVLDTSYKQGVKKVVSCLSTCIFPDKTTYPIDETMVHNGPPHPSNFGYSH 142
F N++ +L + GV +VV + D+ ID P N Y+
Sbjct: 99 FTETNVQGTQTLLQCAVDAGVGRVVH-----VSTDEVYGSIDSGSWTESSPLEPNSPYAA 153
Query: 143 AKRMLDVLNKAYYQQHGVTYTSVIPCNVFGPHDNYNLESSHVIPGLIRKLYD 194
+K D++ +AY++ +G+ CN +GP+ + +IP + L D
Sbjct: 154 SKAGSDLVARAYHRTYGLDVRITRCCNNYGPYQH----PEKLIPLFVTNLLD 201
>pdb|4EF7|A Chain A, Udp-Xylose Synthase
pdb|4EF7|B Chain B, Udp-Xylose Synthase
pdb|4GLL|A Chain A, Crystal Structure Of Human Udp-Xylose Synthase.
pdb|4GLL|B Chain B, Crystal Structure Of Human Udp-Xylose Synthase
Length = 337
Score = 35.0 bits (79), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 73/189 (38%), Gaps = 19/189 (10%)
Query: 3 EEKIILVTGGTGLVGXXXXXXXX-------------XXXXRDDETWIFVSSKEADLSNLE 49
+ K IL+TGG G VG R+ E WI + +L N +
Sbjct: 4 DRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWI--GHENFELINHD 61
Query: 50 STQQLFSKYKPTHVIHLAAMVGGLFHNMSHNLDFFRVNMKINDNVLDTSYKQGVKKVVSC 109
+ L+ + + HLA+ + M + + + N N+L + + G + +++
Sbjct: 62 VVEPLYIEVD--QIYHLASPASPPNY-MYNPIKTLKTNTIGTLNMLGLAKRVGARLLLAS 118
Query: 110 LSTCIFPDKTTYPIDETMVHNGPPHPSNFGYSHAKRMLDVLNKAYYQQHGVTYTSVIPCN 169
S ++ D +P E + P Y KR+ + + AY +Q GV N
Sbjct: 119 TSE-VYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFN 177
Query: 170 VFGPHDNYN 178
FGP + N
Sbjct: 178 TFGPRMHMN 186
>pdb|3ENK|A Chain A, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
pdb|3ENK|B Chain B, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
Length = 341
Score = 35.0 bits (79), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 61/144 (42%), Gaps = 19/144 (13%)
Query: 1 MAEEKIILVTGGTGLVGXXXXXXXXXXXXRDDETWIFVSSK------------------E 42
M+ + ILVTGG G +G V+SK E
Sbjct: 2 MSTKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKITGKTPAFHE 61
Query: 43 ADLSNLESTQQLFSKYKPTHVIHLAAMVGGLFHNMSHNLDFFRVNMKINDNVLDTSYKQG 102
D+S+ + ++F + T IH AA+ + +++ ++++R N+ ++L ++
Sbjct: 62 TDVSDERALARIFDAHPITAAIHFAAL-KAVGESVAKPIEYYRNNLDSLLSLLRVMRERA 120
Query: 103 VKKVVSCLSTCIFPDKTTYPIDET 126
VK++V S ++ PIDET
Sbjct: 121 VKRIVFSSSATVYGVPERSPIDET 144
>pdb|1WVG|A Chain A, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
Typhi
pdb|1WVG|B Chain B, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
Typhi
Length = 359
Score = 35.0 bits (79), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 73/169 (43%), Gaps = 28/169 (16%)
Query: 37 FVSSKEADLSNLESTQQLFSKYKPTHVIHLAAMVGGLFHNMSHN--LDFFRVNMKINDNV 94
+ S D+ + E + +++KP V H+AA +S+ + + N+ ++
Sbjct: 58 LMESHIGDIRDFEKLRSSIAEFKPEIVFHMAAQP---LVRLSYEQPIKTYSTNVMGTVHL 114
Query: 95 LDTSYKQG-VKKVVSCLSTCIFPDKTT---YPIDETMVHNGPPHPSNFGYSHAKRMLDVL 150
L+T + G +K VV+ S + ++ Y +E M P YS++K +++
Sbjct: 115 LETVKQVGNIKAVVNITSDKCYDNREWVWGYRENEPMGGYDP-------YSNSKGCAELV 167
Query: 151 ---------NKAYYQQHGVTYTSVIPCNVFGPHDNYNLESSHVIPGLIR 190
N A Y+QHGV SV NV G D +IP ++R
Sbjct: 168 ASAFRNSFFNPANYEQHGVGLASVRAGNVIGGGD---WAKDRLIPDILR 213
>pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose
4,6- Dehydratase) From Streptomyces Venezuelae With Nad
And Dau Bound
Length = 337
Score = 34.7 bits (78), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 47/112 (41%), Gaps = 9/112 (8%)
Query: 83 FFRVNMKINDNVLDTSYKQGVKKVVSCLSTCIFPDKTTYPIDETMVHNGPPHPSNFGYSH 142
F N++ +L + GV +VV + ++ ID P N Y+
Sbjct: 99 FTETNVQGTQTLLQCAVDAGVGRVVHVSTNQVYGS-----IDSGSWTESSPLEPNSPYAA 153
Query: 143 AKRMLDVLNKAYYQQHGVTYTSVIPCNVFGPHDNYNLESSHVIPGLIRKLYD 194
+K D++ +AY++ +G+ CN +GP+ + +IP + L D
Sbjct: 154 SKAGSDLVARAYHRTYGLDVRITRCCNNYGPYQH----PEKLIPLFVTNLLD 201
>pdb|2B69|A Chain A, Crystal Structure Of Human Udp-Glucoronic Acid
Decarboxylase
Length = 343
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 72/190 (37%), Gaps = 21/190 (11%)
Query: 3 EEKIILVTGGTGLVGXXXXXXXX-------------XXXXRDDETWIFVSSKEADLSNLE 49
+ K IL+TGG G VG R+ E WI + +L N +
Sbjct: 26 DRKRILITGGAGFVGSHLTDKLXXDGHEVTVVDNFFTGRKRNVEHWI--GHENFELINHD 83
Query: 50 STQQLFSKYKPTHVIHLAAMVGGLFHNMSHN-LDFFRVNMKINDNVLDTSYKQGVKKVVS 108
+ L+ + + HLA+ N +N + + N N L + + G + +++
Sbjct: 84 VVEPLYIEVD--QIYHLASPASPP--NYXYNPIKTLKTNTIGTLNXLGLAKRVGARLLLA 139
Query: 109 CLSTCIFPDKTTYPIDETMVHNGPPHPSNFGYSHAKRMLDVLNKAYYQQHGVTYTSVIPC 168
S ++ D +P E + P Y KR+ + AY +Q GV
Sbjct: 140 STSE-VYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETXCYAYXKQEGVEVRVARIF 198
Query: 169 NVFGPHDNYN 178
N FGP + N
Sbjct: 199 NTFGPRXHXN 208
>pdb|3LU1|A Chain A, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|B Chain B, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|C Chain C, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|D Chain D, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
Length = 364
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 63/154 (40%), Gaps = 8/154 (5%)
Query: 33 ETWIFVSSKEADLSNLESTQQLFSKYKPTHVIHLAAMVGGLFHNMSHNLDFFRVNMKIND 92
E W E D+ +L + +Q+ HV+H AA+ G + ++ + N+
Sbjct: 89 EQWSRFCFIEGDIRDLTTCEQVMKGVD--HVLHQAAL-GSVPRSIVDPITTNATNITGFL 145
Query: 93 NVLDTSYKQGVKKVVSCLSTCIFPDKTTYPIDETMVHNGPPHPSNFGYSHAKRMLDVLNK 152
N+L + V+ S+ + D P E + N P P Y+ K + ++ +
Sbjct: 146 NILHAAKNAQVQSFTYAASSSTYGDHPALPKVEENIGN-PLSP----YAVTKYVNEIYAQ 200
Query: 153 AYYQQHGVTYTSVIPCNVFGPHDNYNLESSHVIP 186
Y + +G + NVFG + N + VIP
Sbjct: 201 VYARTYGFKTIGLRYFNVFGRRQDPNGAYAAVIP 234
>pdb|1KEP|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KEP|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KER|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KER|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KET|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1KET|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1OC2|A Chain A, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
pdb|1OC2|B Chain B, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
Length = 348
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 3/112 (2%)
Query: 242 KVLGTGKPLRQFIYSLDLARLFIWVLREYDSVEPIILSVD-EKDXXXXXXXXXXXXXXFQ 300
K+ G GK +R +I++ D + +L + E ++ D EK+ Q
Sbjct: 216 KLYGEGKNVRDWIHTNDHSTGVWAILTKGRMGETYLIGADGEKNNKEVLELILEKMG--Q 273
Query: 301 FKGRITFDTNAADGQLKKTASNRKLRELRGPGFEFTPFQQAVQESVAWFREN 352
K T+ A L+ KLR+ G +FT F + ++E++ W+ +N
Sbjct: 274 PKDAYDHVTDRAGHDLRYAIDASKLRDELGWTPQFTDFSEGLEETIQWYTDN 325
>pdb|3RUC|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 63/154 (40%), Gaps = 8/154 (5%)
Query: 33 ETWIFVSSKEADLSNLESTQQLFSKYKPTHVIHLAAMVGGLFHNMSHNLDFFRVNMKIND 92
E W E D+ +L + +Q+ HV+H AA+ G + ++ + N+
Sbjct: 76 EQWSRFCFIEGDIRDLTTCEQVMKGVD--HVLHQAAL-GSVPRSIVDPITTNATNITGFL 132
Query: 93 NVLDTSYKQGVKKVVSCLSTCIFPDKTTYPIDETMVHNGPPHPSNFGYSHAKRMLDVLNK 152
N+L + V+ S+ + D P E + N P P Y+ K + ++ +
Sbjct: 133 NILHAAKNAQVQSFTYAASSSTYGDHPALPKVEENIGN-PLSP----YAVTKYVNEIYAQ 187
Query: 153 AYYQQHGVTYTSVIPCNVFGPHDNYNLESSHVIP 186
Y + +G + NVFG + N + VIP
Sbjct: 188 VYARTYGFKTIGLRYFNVFGRRQDPNGAYAAVIP 221
>pdb|3RU9|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUD|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
Length = 351
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 63/154 (40%), Gaps = 8/154 (5%)
Query: 33 ETWIFVSSKEADLSNLESTQQLFSKYKPTHVIHLAAMVGGLFHNMSHNLDFFRVNMKIND 92
E W E D+ +L + +Q+ HV+H AA+ G + ++ + N+
Sbjct: 76 EQWSRFCFIEGDIRDLTTCEQVMKGVD--HVLHQAAL-GSVPRSIVDPITTNATNITGFL 132
Query: 93 NVLDTSYKQGVKKVVSCLSTCIFPDKTTYPIDETMVHNGPPHPSNFGYSHAKRMLDVLNK 152
N+L + V+ S+ + D P E + N P P Y+ K + ++ +
Sbjct: 133 NILHAAKNAQVQSFTYAASSSTYGDHPALPKVEENIGN-PLSP----YAVTKYVNEIYAQ 187
Query: 153 AYYQQHGVTYTSVIPCNVFGPHDNYNLESSHVIP 186
Y + +G + NVFG + N + VIP
Sbjct: 188 VYARTYGFKTIGLRYFNVFGRRQDPNGAYAAVIP 221
>pdb|3RU7|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 63/154 (40%), Gaps = 8/154 (5%)
Query: 33 ETWIFVSSKEADLSNLESTQQLFSKYKPTHVIHLAAMVGGLFHNMSHNLDFFRVNMKIND 92
E W E D+ +L + +Q+ HV+H AA+ G + ++ + N+
Sbjct: 70 EQWSRFCFIEGDIRDLTTCEQVMKGVD--HVLHQAAL-GSVPRSIVDPITTNATNITGFL 126
Query: 93 NVLDTSYKQGVKKVVSCLSTCIFPDKTTYPIDETMVHNGPPHPSNFGYSHAKRMLDVLNK 152
N+L + V+ S+ + D P E + N P P Y+ K + ++ +
Sbjct: 127 NILHAAKNAQVQSFTYAASSSTYGDHPALPKVEENIGN-PLSP----YAVTKYVNEIYAQ 181
Query: 153 AYYQQHGVTYTSVIPCNVFGPHDNYNLESSHVIP 186
Y + +G + NVFG + N + VIP
Sbjct: 182 VYARTYGFKTIGLRYFNVFGRRQDPNGAYAAVIP 215
>pdb|3A1N|A Chain A, Crystal Structure Of L-Threonine Dehydrogenase From
Hyperthermophilic Archaeon Thermoplasma Volcanium
pdb|3A1N|B Chain B, Crystal Structure Of L-Threonine Dehydrogenase From
Hyperthermophilic Archaeon Thermoplasma Volcanium
pdb|3A4V|A Chain A, Crystal Structure Of Pyruvate Bound L-Threonine
Dehydrogenase From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3A4V|B Chain B, Crystal Structure Of Pyruvate Bound L-Threonine
Dehydrogenase From Hyperthermophilic Archaeon
Thermoplasma Volcanium
Length = 317
Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 39/182 (21%), Positives = 66/182 (36%), Gaps = 42/182 (23%)
Query: 6 IILVTGGTGLVGX-----------XXXXXXXXXXXRDDETWIFVSSKEADLSNLESTQQL 54
+ILVTG +G +G RD F++ D+SN + +
Sbjct: 1 MILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRDTGGIKFIT---LDVSNRDEIDRA 57
Query: 55 FSKYKPTHVIHLAAMVGGLFHNMSHNLDFFRVNMKINDNVLDTSYKQGVKKVVSCLSTCI 114
KY + HLA ++ ++VNM N+L+ + + V+KVV + +
Sbjct: 58 VEKYSIDAIFHLAGILSA--KGEKDPALAYKVNMNGTYNILEAAKQHRVEKVVIPSTIGV 115
Query: 115 FPDKTTYPIDETMVHNGPPHPSN-----------FGYSHAKRMLDVLNKAYYQQHGVTYT 163
F GP P N Y K ++L + YY++ G+
Sbjct: 116 F---------------GPETPKNKVPSITITRPRTMYGVTKIAAELLGQYYYEKFGLDVR 160
Query: 164 SV 165
S+
Sbjct: 161 SL 162
>pdb|3A9W|A Chain A, Crystal Structure Of L-Threonine Bound L-Threonine
Dehydrogenase (Y137f) From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3A9W|B Chain B, Crystal Structure Of L-Threonine Bound L-Threonine
Dehydrogenase (Y137f) From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3AJR|A Chain A, Crystal Structure Of L-3-Hydroxynorvaline Bound
L-Threonine Dehydrogenase (Y137f) From Hyperthermophilic
Archaeon Thermoplasma Volcanium
pdb|3AJR|B Chain B, Crystal Structure Of L-3-Hydroxynorvaline Bound
L-Threonine Dehydrogenase (Y137f) From Hyperthermophilic
Archaeon Thermoplasma Volcanium
Length = 317
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 70/171 (40%), Gaps = 20/171 (11%)
Query: 6 IILVTGGTGLVGX-----------XXXXXXXXXXXRDDETWIFVSSKEADLSNLESTQQL 54
+ILVTG +G +G RD F++ D+SN + +
Sbjct: 1 MILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRDTGGIKFIT---LDVSNRDEIDRA 57
Query: 55 FSKYKPTHVIHLAAMVGGLFHNMSHNLDFFRVNMKINDNVLDTSYKQGVKKVVSCLSTCI 114
KY + HLA ++ ++VNM N+L+ + + V+KVV + +
Sbjct: 58 VEKYSIDAIFHLAGILSA--KGEKDPALAYKVNMNGTYNILEAAKQHRVEKVVIPSTIGV 115
Query: 115 FPDKTTYPIDETMVHNGPPHPSNFGYSHAKRMLDVLNKAYYQQHGVTYTSV 165
F +T ++ P + FG + K ++L + YY++ G+ S+
Sbjct: 116 FGPETPKNKVPSITITRP--RTMFGVT--KIAAELLGQYYYEKFGLDVRSL 162
>pdb|3M2P|A Chain A, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|B Chain B, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|C Chain C, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|D Chain D, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|E Chain E, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|F Chain F, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
Length = 311
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 39/196 (19%), Positives = 82/196 (41%), Gaps = 27/196 (13%)
Query: 7 ILVTGGTGLVGXXXXXXXXXXXXRDDETWIFVSSKEAD--LSNLE------STQQLFSKY 58
I VTGGTG +G D T I ++ + +++ E + + L ++
Sbjct: 5 IAVTGGTGFLG----QYVVESIKNDGNTPIILTRSIGNKAINDYEYRVSDYTLEDLINQL 60
Query: 59 KPTH-VIHLAAMVGGLFHNMSHNLDFFRVNMKINDNVLDTSYKQGVKKVVSCLSTCIFPD 117
V+HLAA G + F N + N+ D Y+ + +V + + D
Sbjct: 61 NDVDAVVHLAATRGS-----QGKISEFHDNEILTQNLYDACYENNISNIVYASTISAYSD 115
Query: 118 KTTYPIDETMVHNGPPHPSNFGYSHAKRMLDVLNKAYYQQHGVTYTSVIPCNVFGPHDNY 177
+T+ P +E + P P + Y +K + + Y ++ G+ ++ +++G +
Sbjct: 116 ETSLPWNEKEL----PLP-DLXYGVSKLACEHIGNIYSRKKGLCIKNLRFAHLYG----F 166
Query: 178 NLESSHVIPGLIRKLY 193
N ++++ I R+ +
Sbjct: 167 NEKNNYXINRFFRQAF 182
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 163 TSVIPCNVFGPHDNYNLESSHVIPGLIRKLYDTIEKGKDQSVFES 207
T + PC P Y SHVI GL + T + D S+FES
Sbjct: 136 TELTPCETENPMGGYGKTISHVIIGL-KTAKGTKQLKLDPSIFES 179
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,593,537
Number of Sequences: 62578
Number of extensions: 434979
Number of successful extensions: 975
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 902
Number of HSP's gapped (non-prelim): 69
length of query: 358
length of database: 14,973,337
effective HSP length: 100
effective length of query: 258
effective length of database: 8,715,537
effective search space: 2248608546
effective search space used: 2248608546
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)