RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7590
(358 letters)
>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP;
1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A*
1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*
Length = 321
Score = 247 bits (632), Expect = 3e-80
Identities = 95/365 (26%), Positives = 164/365 (44%), Gaps = 53/365 (14%)
Query: 1 MAEEKIILVTGGTGLVGKAIEKIVKEEEKRDDETWIFVSSKEADLSNLESTQQLFSKYKP 60
MA++++ + G G+VG AI ++ E+R D + + E +L + + F+ +
Sbjct: 1 MAKQRV-FIAGHRGMVGSAI---RRQLEQRGDVELVLRTRDELNLLDSRAVHDFFASERI 56
Query: 61 THVIHLAAMVGGLFHNMSHNLDFFRVNMKINDNVLDTSYKQGVKKVVSCLSTCIFPDKTT 120
V AA VGG+ N ++ DF NM I N++ +++ V K++ S+CI+P
Sbjct: 57 DQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAK 116
Query: 121 YPIDETMVHNGPPHPSNFGYSHAKRMLDVLNKAYYQQHGVTYTSVIPCNVFGPHDNYNLE 180
P+ E+ + G P+N Y+ AK L ++Y +Q+G Y SV+P N++GPHDN++
Sbjct: 117 QPMAESELLQGTLEPTNEPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPS 176
Query: 181 SSHVIPGLIRKLYDTIEKGKDQSVFESRARFPPGANSFGLDKLDLIPFSLFPFCFTGGDE 240
+SHVIP L+R+ ++ + +
Sbjct: 177 NSHVIPALLRRFHEATAQKA--------------------------------------PD 198
Query: 241 FKVLGTGKPLRQFIYSLDLARLFIWVLREYDSVEPIILSVDEK-------DEVTIAEVAE 293
V G+G P+R+F++ D+A I V+ V + TI E+A+
Sbjct: 199 VVVWGSGTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQ 258
Query: 294 AIANAFQFKGRITFDTNAADGQLKKTASNRKLRELRGPGFEF-TPFQQAVQESVAWFREN 352
IA +KGR+ FD + DG +K +L +L G+ + + + WF EN
Sbjct: 259 TIAKVVGYKGRVVFDASKPDGTPRKLLDVTRLHQL---GWYHEISLEAGLASTYQWFLEN 315
Query: 353 HSVAR 357
R
Sbjct: 316 QDRFR 320
>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase,
GDP-gulose, GDP-galactose, keto intermediate, vitamin C,
SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP:
c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*
Length = 379
Score = 141 bits (358), Expect = 5e-39
Identities = 65/368 (17%), Positives = 126/368 (34%), Gaps = 68/368 (18%)
Query: 1 MAEEKIILVTGGTGLVGKAI-EKIVKE---------EEKRDDETWIFVSSKE-ADLSNLE 49
+E I +TG G + I ++ E ++ +F DL +E
Sbjct: 26 PSENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVME 85
Query: 50 STQQLFSKYKPTHVIHLAAMVGGLFHNMSHNLDFFRVNMKINDNVLDTSYKQGVKKVVSC 109
+ ++ HV +LAA +GG+ S++ N I+ N+++ + G+K+
Sbjct: 86 NCLKVTEG--VDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFF-Y 142
Query: 110 LST-CIFPDKTTYPIDETMVHNGPPHPSNF--GYSHAKRMLDVLNKAYYQQHGVTYTSVI 166
S+ CI+P+ + P+ + K + L K Y + G+
Sbjct: 143 ASSACIYPEFKQLETTNVSLKESDAWPAEPQDAFGLEKLATEELCKHYNKDFGIECRIGR 202
Query: 167 PCNVFGPHDNYNLESSHVIPGLIRKLYDTIEKGKDQSVFESRARFPPGANSFGLDKLDLI 226
N++GP + RK
Sbjct: 203 FHNIYGPFGTWKGGREKAPAAFCRK----------------------------------- 227
Query: 227 PFSLFPFCFTGGDEFKVLGTGKPLRQFIYSLDLARLFIWVLREYDSVEPIILSVDEKDEV 286
T D F++ G G R F + + + L + D EP+ + DE V
Sbjct: 228 -------AQTSTDRFEMWGDGLQTRSFTFIDECVEG-VLRLTKSDFREPVNIGSDE--MV 277
Query: 287 TIAEVAEAIANAFQFKGRITFDTNAADGQLKKTASNRKLRELRG--PGFEFTPFQQAVQE 344
++ E+AE + + + K I +G + + N ++E G P ++ ++
Sbjct: 278 SMNEMAEMVLSFEEKKLPIHH-IPGPEGVRGRNSDNNLIKEKLGWAPN---MRLKEGLRI 333
Query: 345 SVAWFREN 352
+ W +E
Sbjct: 334 TYFWIKEQ 341
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase,
structural genomics, PSI-2, protein structure
initiative; HET: UDP; 2.95A {Bacillus cereus}
Length = 311
Score = 100 bits (252), Expect = 2e-24
Identities = 64/366 (17%), Positives = 126/366 (34%), Gaps = 82/366 (22%)
Query: 7 ILVTGGTGLVGKAI-EKIVKEEEKR---DDETWIFVSSK-----EADLSNLESTQQLFSK 57
I VTGGTG +G+ + E I + + +K E +S+ +
Sbjct: 5 IAVTGGTGFLGQYVVESIKNDGNTPIILTR----SIGNKAINDYEYRVSDYTLEDLINQL 60
Query: 58 YKPTHVIHLAAMVGGLFHNMSHNLDFFRVNMKINDNVLDTSYKQGVKKVVSCLSTCIFPD 117
V+HLAA G + F N + N+ D Y+ + +V + + D
Sbjct: 61 NDVDAVVHLAATRG-----SQGKISEFHDNEILTQNLYDACYENNISNIVYASTISAYSD 115
Query: 118 KTTYPIDETMVHNGPPHPSNFGYSHAKRMLDVLNKAYYQQHGVTYTSVIPCNVFGPHDNY 177
+T+ P +E P P Y +K + + Y ++ G+ ++ +++G ++
Sbjct: 116 ETSLPWNEKE----LPLPDLM-YGVSKLACEHIGNIYSRKKGLCIKNLRFAHLYGFNEKN 170
Query: 178 NLESSHVIPGLIRKLYDTIEKGKDQSVFESRARFPPGANSFGLDKLDLIPFSLFPFCFTG 237
N +I R+ +
Sbjct: 171 NY----MINRFFRQAFH------------------------------------------- 183
Query: 238 GDEFKVLGTGKPLRQFIYSLDLARLFIWVLREYDSVEPIILSVDEKDEVTIAEVAEAIAN 297
G++ + R+F+Y+ D A+ I+ L++ ++ D +T EVA I N
Sbjct: 184 GEQLTLHANSVAKREFLYAKDAAKSVIYALKQEKVSG--TFNIGSGDALTNYEVANTINN 241
Query: 298 AFQFKGRITFDTNAADGQLKKT-ASNRKLRELRG--PGF-------EFTPFQQAVQESVA 347
AF K + A+ + + + K +EL + E + + +
Sbjct: 242 AFGNKDNLLVKNPNANEGIHSSYMDSSKAKELLDFSTDYNFATAVEEIHLLMRGLDDVPL 301
Query: 348 WFRENH 353
W+ +H
Sbjct: 302 WYEGHH 307
>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3-
hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A
{Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*
Length = 317
Score = 97.4 bits (243), Expect = 3e-23
Identities = 47/372 (12%), Positives = 112/372 (30%), Gaps = 83/372 (22%)
Query: 6 IILVTGGTGLVG-KAIEKIVKE------------EEKRDDETWIFVSSKEADLSNLESTQ 52
+ILVTG +G +G + + + ++ + +I D+SN +
Sbjct: 1 MILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRDTGGIKFI-----TLDVSNRDEID 55
Query: 53 QLFSKYKPTHVIHLAAMVGGLFHNMSHNLDFFRVNMKINDNVLDTSYKQGVKKVVSCLST 112
+ KY + HLA ++ ++VNM N+L+ + + V+KVV +
Sbjct: 56 RAVEKYSIDAIFHLAGILSA--KGEKDPALAYKVNMNGTYNILEAAKQHRVEKVVIPSTI 113
Query: 113 CIF-PDKTTYPIDETMVHNGPPHPSNFGYSHAKRMLDVLNKAYYQQHGVTYTSVIPCNVF 171
+F P+ + P + K ++L + YY++ G+ S+ +
Sbjct: 114 GVFGPETPKNKVPSIT----ITRPRTM-FGVTKIAAELLGQYYYEKFGLDVRSLRYPGII 168
Query: 172 GPHDNYNLESSHVIPGLIRKLYDTIEKGKDQSVFESRARFPPGANSFGLDKLDLIPFSLF 231
++ +
Sbjct: 169 SYKAEPTAGTTDYAVEIFYYA--------------------------------------- 189
Query: 232 PFCFTGGDEFKVLGTGKPLRQFIYSLDLARLFIWVLREYDSVEPIILSV--DEKDEVTIA 289
+++K +Y D + + + E D + ++ + T +
Sbjct: 190 ----VKREKYKCYLAPNRALPMMYMPDALKALVDLY-EADRDKLVLRNGYNVTAYTFTPS 244
Query: 290 EVAEAIANAFQFKGRITFDTNAAD---GQLKKTASNRKLRELRGPGFEFTP---FQQAVQ 343
E+ I + I + + D ++ + + G F+ + +
Sbjct: 245 ELYSKIKERIP-EFEIEYKEDFRDKIAATWPESLDSSEASNEWG----FSIEYDLDRTID 299
Query: 344 ESVAWFRENHSV 355
+ + E +
Sbjct: 300 DMIDHISEKLGI 311
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A
{Pseudomonas aeruginosa}
Length = 342
Score = 97.0 bits (242), Expect = 6e-23
Identities = 47/380 (12%), Positives = 94/380 (24%), Gaps = 92/380 (24%)
Query: 7 ILVTGGTGLVGKAIEKIVKEEEKRDDETWIFV--SSK------------EADLSNLESTQ 52
V G TGL+G + + + SS+ A++ + +
Sbjct: 16 YAVLGATGLLGHH---AARAIRAAGHDLVLIHRPSSQIQRLAYLEPECRVAEMLDHAGLE 72
Query: 53 QLFSKYKPTHVIHLAAMVGGLFHNMSHNLDFFRVNMKINDNVLDTSYKQGVKKVVSCLST 112
+ VI A + + + + V +++ +
Sbjct: 73 RALRGL--DGVIFSAGYYP---SRPRRWQEEVASALGQTNPFYAACLQARVPRILYV-GS 126
Query: 113 C--IFPDKTTYPIDETMVHNGPPHPSNFGYSHAKRM--LDVLNKAYYQQHGVTYTSVIPC 168
+ P E + ++ P + Y K ++G+ IP
Sbjct: 127 AYAMPRHPQGLPGHEGLFYDSLPSGKS-SYVLCKWALDEQARE---QARNGLPVVIGIPG 182
Query: 169 NVFGPHDNYNLESSHVIPGLIRKLYDTIEKGKDQSVFESRARFPPGANSFGLDKLDLIPF 228
V G D I ++ I G+
Sbjct: 183 MVLGELD---------IGPTTGRVITAIGNGE---------------------------- 205
Query: 229 SLFPFCFTGGDEF-----------KVLGTGKPLRQFIYS---LDLARLFIWVLREYDSVE 274
G L G+ +++ + L++A L +
Sbjct: 206 --MTHYVAGQRNVIDAAEAGRGLLMALERGRIGERYLLTGHNLEMADLTRRIAELLGQPA 263
Query: 275 PIILSVDEKDEVTIAEVAEAIANAFQFKGRITFDTNAADGQLKKTASNRK-LRELRGPGF 333
P +S+ +A + + + RK EL GF
Sbjct: 264 PQPMSM--AMARALATLGRLRYRVSGQLPLLDETA-IEVMAGGQFLDGRKAREEL---GF 317
Query: 334 -EFTPFQQAVQESVAWFREN 352
T + ++ WFR+N
Sbjct: 318 FSTTALDDTLLRAIDWFRDN 337
>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics,
protein structure initiative, NEW YORK SGX resear for
structural genomics; HET: NAD; 1.87A {Archaeoglobus
fulgidus}
Length = 313
Score = 93.7 bits (234), Expect = 6e-22
Identities = 71/367 (19%), Positives = 127/367 (34%), Gaps = 89/367 (24%)
Query: 7 ILVTGGTGLVG-KAIEKIVKEEE----------KRD--DETWIFVSSKEADLSNLESTQQ 53
I+VTGG G +G ++K+ + E + +E V +ADL+ +
Sbjct: 4 IVVTGGAGFIGSHVVDKLSESNEIVVIDNLSSGNEEFVNEAARLV---KADLAADDIKDY 60
Query: 54 LFSKYKPTHVIHLAAM--VGGLFHNMSHNLDFFRVNMKINDNVLDTSYKQGVKKVV-SCL 110
L V H+AA V + + +R N+ +L+ K GV ++V +
Sbjct: 61 LK---GAEEVWHIAANPDVR---IGAENPDEIYRNNVLATYRLLEAMRKAGVSRIVFT-- 112
Query: 111 STC-IFPDKTTYPIDETMVHNGPPHPSNFGYSHAKRMLDVLNKAYYQQHGVTYTSVIPCN 169
ST ++ + P E P HP + Y +K + L ++Y + N
Sbjct: 113 STSTVYGEAKVIPTPEDY----PTHPISL-YGASKLACEALIESYCHTFDMQAWIYRFAN 167
Query: 170 VFGPHDNYNLESSHVIPGLIRKLYDTIEKGKDQSVFESRARFPPGANSFGLDKLDLIPFS 229
V G + VI I KL
Sbjct: 168 VIGRRSTH-----GVIYDFIMKL------------------------------------- 185
Query: 230 LFPFCFTGGDEFKVLGTGKPLRQFIYSLDLARLFIWVLREYDSVEPIILSVDEKDEVTIA 289
+E ++LG G+ + +IY D ++ LR + V + + D++ +
Sbjct: 186 -----KRNPEELEILGNGEQNKSYIYISDCVDAMLFGLRGDERVNIFNIGSE--DQIKVK 238
Query: 290 EVAEAIANAFQFKGRITF--DTNAADGQLKKT-ASNRKLRELRGPGFE-FTPFQQAVQES 345
+AE + R F G + S KL+ L G++ ++AV+ +
Sbjct: 239 RIAEIVCEELGLSPRFRFTGGDRGWKGDVPVMLLSIEKLKRL---GWKPRYNSEEAVRMA 295
Query: 346 VAWFREN 352
V E+
Sbjct: 296 VRDLVED 302
>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK,
UDP, N-acetylglucosamine, N- acetylgalactosamine,
UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas
aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*
Length = 352
Score = 86.2 bits (214), Expect = 4e-19
Identities = 53/384 (13%), Positives = 121/384 (31%), Gaps = 89/384 (23%)
Query: 2 AEEKIILVTGGTGLVG-------------------------KAIEKIVKEEEKRDDETWI 36
A+ K+ L+TG G +G + ++++ ++ +
Sbjct: 25 AQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFK 84
Query: 37 FVSSKEADLSNLESTQQLFSKYKPTHVIHLAAMVGGLFHNMSHNLDFFRVNMKINDNVLD 96
F+ + D+ NL+ + +V+H AA+ G + +++ + N+ N+L
Sbjct: 85 FI---QGDIRNLDDCNNACAG--VDYVLHQAAL-GSVPRSINDPITSNATNIDGFLNMLI 138
Query: 97 TSYKQGVKKVVSCLSTCIFPDKTTYPIDETMVHNGPPHPSNFGYSHAKRMLDVLNKAYYQ 156
+ V+ S+ + D P E P + Y+ K + ++ + +
Sbjct: 139 AARDAKVQSFTYAASSSTYGDHPGLPKVEDT----IGKPLSP-YAVTKYVNELYADVFSR 193
Query: 157 QHGVTYTSVIPCNVFGPHDNYNLESSHVIPGLIRKLYDTIEKGKDQSVFESRARFPPGAN 216
+G + + NVFG + N + VIP +
Sbjct: 194 CYGFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQ---------------------- 231
Query: 217 SFGLDKLDLIPFSLFPFCFTGGDEFKVLGTGKPLRQFIYSLDLARLFIWVLREYDSVEPI 276
GD+ + G G+ R F Y + + +
Sbjct: 232 ---------------------GDDVYINGDGETSRDFCYIENTVQANLLAATAGLDARNQ 270
Query: 277 ILSVDEKDEVTIAEVAEAIANAFQFKGRITFD----TNAADGQLKKT-ASNRKLRELRG- 330
+ ++ ++ ++ A+ + G + +G ++ + A K +L G
Sbjct: 271 VYNIAVGGRTSLNQLFFALRDGLAENGVSYHREPVYRDFREGDVRHSLADISKAAKLLGY 330
Query: 331 -PGFEFTPFQQAVQESVAWFRENH 353
P V ++ W+
Sbjct: 331 APK---YDVSAGVALAMPWYIMFL 351
>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET:
NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*
Length = 311
Score = 84.1 bits (209), Expect = 1e-18
Identities = 78/372 (20%), Positives = 137/372 (36%), Gaps = 90/372 (24%)
Query: 7 ILVTGGTGLVG--------KAIEKIV--------KEEEKRDDETWIFVSSKEADLSNLES 50
+LVTGG G +G ++ K E + DL + E
Sbjct: 3 VLVTGGAGFIGSHIVEDLLARGLEVAVLDNLATGKRENVPKGVPFF-----RVDLRDKEG 57
Query: 51 TQQLFSKYKPTHVIHLAAM--VGGLFHNMSHNLDFFRVNMKINDNVLDTSYKQGVKKVV- 107
++ F +++PTHV H AA V ++ + F VN+ N+L+ + GV+K+V
Sbjct: 58 VERAFREFRPTHVSHQAAQASVK---VSVEDPVLDFEVNLLGGLNLLEACRQYGVEKLVF 114
Query: 108 SCLSTC-----IFPDKTTYPIDETMVHNGPPHPSNFGYSHAKRMLDVLNKAYYQQHGVTY 162
+ ST P+ +ET PP P + Y+ +K + Y Q +G+ +
Sbjct: 115 A--STGGAIYGEVPEGE--RAEETW----PPRPKSP-YAASKAAFEHYLSVYGQSYGLKW 165
Query: 163 TSVIPCNVFGPHDNYNLESSHVIPGLIRKLYDTIEKGKDQSVFESRARFPPGANSFGLDK 222
S+ NV+GP + + E + V+ ++ KG ++ +
Sbjct: 166 VSLRYGNVYGPRQDPHGE-AGVVAIFAERVL----KGLPVTL-------------YARK- 206
Query: 223 LDLIPFSLFPFCFTGGDEFKVLGTGKPLRQFIYSLDLARLFIWVLREYDSVEPIILSVDE 282
T GD +R ++Y D+A L + + +V
Sbjct: 207 -------------TPGD-------EGCVRDYVYVGDVAEAHALALFSLEGI----YNVGT 242
Query: 283 KDEVTIAEVAEAIANAFQFKGRITFDTNAADGQLKKT-ASNRKLRELRGPGFE-FTPFQQ 340
+ T EV A+A A + G L+++ S KL G+ FQ+
Sbjct: 243 GEGHTTREVLMAVAEAAGKAPEVQP-APPRPGDLERSVLSPLKLMAH---GWRPKVGFQE 298
Query: 341 AVQESVAWFREN 352
++ +V FR
Sbjct: 299 GIRLTVDHFRGA 310
>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NADH complex, sugar binding protein; HET: NAI;
1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A*
2q1u_A*
Length = 377
Score = 84.3 bits (209), Expect = 2e-18
Identities = 59/370 (15%), Positives = 112/370 (30%), Gaps = 71/370 (19%)
Query: 7 ILVTGGTGLVGKAI-EKIVKEEEKR----------------DDETWIFVSSKEADLSNLE 49
++V GG G VG + +++++ + D F E +++
Sbjct: 35 VMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKINVPDHPAVRFS---ETSITDDA 91
Query: 50 STQQLFSKYKPTHVIHLAAMVGGLFHNMSHNLDFFRVNMKINDNVLDTSYK-QGVKKVVS 108
L + +V HLA G ++ L N + + + +KKVV
Sbjct: 92 LLASLQDE--YDYVFHLATY-HGNQSSIHDPLADHENNTLTTLKLYERLKHFKRLKKVVY 148
Query: 109 CLSTCIF--PDKTTYPIDETMVHNGPPHPSNFGYSHAKRMLDVLNKAYYQQHGVTYTSVI 166
+ C E + + YS +K + + Y++QH +
Sbjct: 149 SAAGCSIAEKTFDDAKATEETDIVSLHNNDSP-YSMSKIFGEFYSVYYHKQHQLPTVRAR 207
Query: 167 PCNVFGPHDNYNLESSHVIPGLIRKLYDTIEKGKDQSVFESRARFPPGANSFGLDKLDLI 226
NV+GP + + R R P +
Sbjct: 208 FQNVYGPG---------------------------EILGAGRWRGTPATVWRNV------ 234
Query: 227 PFSLFPFCFTGGDEFKVLGTGKPLRQFIYSLDLARLFIWVLREYDSVEPIILSVDEKDEV 286
F + G + G R FI+ D+A I + ++ + E
Sbjct: 235 -TPTFIYKALKGMPLPLENGGVATRDFIFVEDVANGLIACAADGTPGGVYNIASGK--ET 291
Query: 287 TIAEVAEAIANAFQFKGRITFDTN-AADGQLKKTASNRKLRELRGPGFEFTP---FQQAV 342
+IA++A I + D K+ S K R G F+ +
Sbjct: 292 SIADLATKINEITGNNTELDRLPKRPWDNSGKRFGSPEKARRELG----FSADVSIDDGL 347
Query: 343 QESVAWFREN 352
++++ W + N
Sbjct: 348 RKTIEWTKAN 357
>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose
4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis}
PDB: 3icp_A* 3aw9_A*
Length = 312
Score = 82.6 bits (205), Expect = 5e-18
Identities = 74/375 (19%), Positives = 129/375 (34%), Gaps = 97/375 (25%)
Query: 7 ILVTGGTGLVG-KAIEKIVKEEE-----------KRD--DETWIFVSSKEADLSNLESTQ 52
I+VTGG G +G ++K+V+ +R+ + + DL +
Sbjct: 3 IVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRREFVNPSAELH---VRDLKDYS--- 56
Query: 53 QLFSKYKPTHVIHLAAM--VGGLFHNMSHNLDFFRVNMKINDNVLDTSYKQGVKKVV-SC 109
+ K V H AA V + + + F N+ NVL+ + + GV+ VV +
Sbjct: 57 -WGAGIKGDVVFHFAANPEVR---LSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFA- 111
Query: 110 LSTC-IFPDKTTYPIDETMVHNGPPHPSNFGYSHAKRMLDVLNKAYYQQHGVTYTSVIPC 168
S+ ++ D P E P P + Y AK +V+ Y + GV +V
Sbjct: 112 -SSSTVYGDADVIPTPEEE----PYKPISV-YGAAKAAGEVMCATYARLFGVRCLAVRYA 165
Query: 169 NVFGPHDNYNLESSHVIPGLIRKLYDTIEKGKDQSVFESRARFPPGANSFGLDKLDLIPF 228
NV GP + VI I KL
Sbjct: 166 NVVGPRLRHG-----VIYDFIMKL------------------------------------ 184
Query: 229 SLFPFCFTGGDEFKVLGTGKPLRQFIYSLDLARLFIWVLR--EYDSVEPIILSVDEKDEV 286
+ +VLG G + ++Y D + + E + L+V D V
Sbjct: 185 ------RRNPNVLEVLGDGTQRKSYLYVRDAVEATLAAWKKFEEMDAPFLALNVGNVDAV 238
Query: 287 TIAEVAEAIANAFQFKGRITFDTNAADGQLKK------TASNRKLRELRGPGFEFTP--- 337
+ ++A+ +A + I + DG+ T + KL +L G + P
Sbjct: 239 RVLDIAQIVAEVLGLRPEIRLVPSTPDGRGWPGDVKYMTLAVTKLMKLTG----WRPTMT 294
Query: 338 FQQAVQESVAWFREN 352
+AV+++ +
Sbjct: 295 SAEAVKKTAEDLAKE 309
>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse,
oxidoreductase; 2.10A {Chromohalobacter salexigens}
Length = 267
Score = 80.8 bits (200), Expect = 1e-17
Identities = 36/203 (17%), Positives = 70/203 (34%), Gaps = 37/203 (18%)
Query: 7 ILVTGGTGLVGKAI-EKIVKE------------EEKRDDETWIFVSSKEADLSNLESTQQ 53
+LVTG G VG AI + E + DL++ ++
Sbjct: 5 LLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGAAEAHEEIV-----ACDLADAQAVHD 59
Query: 54 LFSKYKPTHVIHLAAM-VGGLFHNMSHNLDFFRVNMKINDNVLDTSYKQGVKKVV---SC 109
L +IHL + V ++ D + N+ N+ + + G ++V S
Sbjct: 60 LVKD--CDGIIHLGGVSVERPWN------DILQANIIGAYNLYEAARNLGKPRIVFASS- 110
Query: 110 LSTCIFPDKTTYPIDETMVHNGPPHPSNFGYSHAKRMLDVLNKAYYQQHGVTYTSVIPCN 169
+ I T ID + P P + Y +K + L YY + + ++ +
Sbjct: 111 -NHTIGYYPRTTRIDTEV----PRRPDSL-YGLSKCFGEDLASLYYHKFDIETLNIRIGS 164
Query: 170 VFGPHDNYNLESSHVIPGLIRKL 192
F + + ++ + +L
Sbjct: 165 CFPKPKDARMMATWLSVDDFMRL 187
>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding,
oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB:
3rfv_A* 3rfx_A*
Length = 267
Score = 78.2 bits (193), Expect = 9e-17
Identities = 34/212 (16%), Positives = 74/212 (34%), Gaps = 44/212 (20%)
Query: 1 MAEEKIILVTGGTGLVGKAI-EKIVKE------------EEKRDDETWIFVSSKEADLSN 47
MA +++ LVTG G +G+ + E++ + +E + + DL++
Sbjct: 1 MAMKRL-LVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPAGPNEECV-----QCDLAD 54
Query: 48 LESTQQLFSKYKPTHVIHLAAMVGGLFHNMSHN---LDFFRVNMKINDNVLDTSYKQGVK 104
+ + + ++HL + S + N+ N+ + + G
Sbjct: 55 ANAVNAMVAG--CDGIVHLGGI--------SVEKPFEQILQGNIIGLYNLYEAARAHGQP 104
Query: 105 KVVSCLSTC----IFPDKTTYPIDETMVHNGPPHPSNFGYSHAKRMLDVLNKAYYQQHGV 160
++V S+ +P T + + P P Y +K + L + Y+ + G
Sbjct: 105 RIVFA-SSNHTIGYYPQ--TERLGPDV----PARPDGL-YGVSKCFGENLARMYFDKFGQ 156
Query: 161 TYTSVIPCNVFGPHDNYNLESSHVIPGLIRKL 192
V + +NY + S+ L
Sbjct: 157 ETALVRIGSCTPEPNNYRMLSTWFSHDDFVSL 188
>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1,
oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium
frigidimaris}
Length = 312
Score = 74.6 bits (184), Expect = 3e-15
Identities = 30/200 (15%), Positives = 65/200 (32%), Gaps = 23/200 (11%)
Query: 7 ILVTGGTG-----LVGKAIEKI---------VKEEEKRDDETWIFVSSKEADLSNLESTQ 52
IL+ G G L K + +++ + F + + +
Sbjct: 5 ILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNTDVVNSGPFE---VVNALDFNQIE 61
Query: 53 QLFSKYKPTHVIHLAAMVGGLFHNMSHNLDFFRVNMKINDNVLDTSYKQGVKKVVSCLST 112
L +K T + +AA++ + + +NM +VL+ + + +KK+ S
Sbjct: 62 HLVEVHKITDIYLMAALLSA--TAEKNPAFAWDLNMNSLFHVLNLAKAKKIKKIFWPSSI 119
Query: 113 CIFPDKTTYPIDETMVHNGPPHPSNFGYSHAKRMLDVLNKAYYQQHGVTYTSVIPCNVFG 172
+F T PS Y +K+ + + Y+ +GV S+ +
Sbjct: 120 AVFGPTTPKENTP---QYTIMEPSTV-YGISKQAGERWCEYYHNIYGVDVRSIRYPGLIS 175
Query: 173 PHDNYNLESSHVIPGLIRKL 192
++ + K
Sbjct: 176 WSTPPGGGTTDYAVDIFYKA 195
>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NAD complex, sugar binding protein; HET: NAD;
2.19A {Bordetella bronchiseptica}
Length = 333
Score = 73.8 bits (182), Expect = 7e-15
Identities = 67/367 (18%), Positives = 116/367 (31%), Gaps = 95/367 (25%)
Query: 7 ILVTGGTGLVGKAI-EKIVKEEEK---------------RDDETWIFVSSKEADLSNLES 50
+ +TG G +G I E +++ +K +D FV E +++
Sbjct: 24 VFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHLKDHPNLTFV---EGSIADHAL 80
Query: 51 TQQLFSKYKPTHVIHLAAMVGGLFHNMSHNLDFFRVNMKINDNVLDTSYKQGVKKVV--- 107
QL +P V+H AA + + N NV+ + K V + V
Sbjct: 81 VNQLIGDLQPDAVVHTAASYK----DPDDWYNDTLTNCVGGSNVVQAAKKNNVGRFVYFQ 136
Query: 108 SCLSTCIFPDKTTYPIDETMVHNGPPHPSNFGYSHAKRMLDVLNKAYYQQHGVTYTSVIP 167
+ + C P+ P +P+N Y+ +K N+ Y + G+ + +
Sbjct: 137 T--ALCYGVKPIQQPVRLDH----PRNPANSSYAISKSA----NEDYLEYSGLDFVTFRL 186
Query: 168 CNVFGPHDNYNLESSHVIPGLIRKLYDTIEKGKDQSVFESRARFPPGANSFGLDKLDLIP 227
NV GP N G + + + +GK V
Sbjct: 187 ANVVGPR-NV--------SGPLPIFFQRLSEGKKCFV----------------------- 214
Query: 228 FSLFPFCFTGGDEFKVLGTGKPLRQFIYSLDLARLFIWVLREYDSVEPIILSVDEKDEVT 287
K R F++ DLAR + + D V +V
Sbjct: 215 -------------------TKARRDFVFVKDLARATVRAV---DGVGHGAYHFSSGTDVA 252
Query: 288 IAEVAEAIANAFQFKGRITFDTNAA-DGQLKKT-ASNRKLRELRGPGFE-FTPFQQAVQE 344
I E+ +A+ A + + + G FTP ++ V
Sbjct: 253 IKELYDAVVEAMALPSYPEPEIRELGPDDAPSILLDPSRTIQDF--GKIEFTPLKETVAA 310
Query: 345 SVAWFRE 351
+VA+FRE
Sbjct: 311 AVAYFRE 317
>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium
tumefa structural genomics, PSI-2, protein structure
initiative; 1.85A {Agrobacterium tumefaciens}
Length = 342
Score = 73.6 bits (181), Expect = 8e-15
Identities = 39/209 (18%), Positives = 70/209 (33%), Gaps = 33/209 (15%)
Query: 7 ILVTGGTGLVG---------------KAIEKIV----KEEEKRDDETWIFVSSKEADLSN 47
I + G G+VG K +EK + E + V ++ ADLS
Sbjct: 17 IAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPAGFSGA-VDARAADLSA 75
Query: 48 LESTQQLFSKYKPTHVIHLAAMVGGLFHNMSHNLDFFRVNMKINDNVLDTSYKQGVKKVV 107
++L + +P + HLAA+V G +R+N+ + D K
Sbjct: 76 PGEAEKLV-EARPDVIFHLAAIVSG--EAELDFDKGYRINLDGTRYLFDAIRIANGKDGY 132
Query: 108 SCL----STC-IFPDKTTYPIDETMVHNGPPHPSNFGYSHAKRMLDVLNKAYYQQHGVTY 162
S+ +F YPI + P Y K + ++L Y ++
Sbjct: 133 KPRVVFTSSIAVFGAPLPYPIPDEF----HTTPLTS-YGTQKAICELLLSDYSRRGFFDG 187
Query: 163 TSVIPCNVFGPHDNYNLESSHVIPGLIRK 191
+ + N +S ++R+
Sbjct: 188 IGIRLPTICIRPGKPNAAASGFFSNILRE 216
>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain
rossmann fold, C-terminal mixed alpha/beta domain; HET:
NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2
Length = 310
Score = 73.0 bits (180), Expect = 9e-15
Identities = 64/374 (17%), Positives = 111/374 (29%), Gaps = 94/374 (25%)
Query: 7 ILVTGGTGLVGKAI---------EKIV---------KEEEKRDDETWIFVSSKEADLSNL 48
I+VTGG G +G I I+ K D ++ + D
Sbjct: 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLNIADYMD--KEDFLIQ 59
Query: 49 ESTQQLFSKYKPTHVIHLAAMVGGLFHN----MSHNLDFFRVNMKINDNVLDTSYKQGVK 104
+ F + H A + M +N + + +L ++ +
Sbjct: 60 IMAGEEFGD--VEAIFHEGACSSTTEWDGKYMMDNNYQYSK-------ELLHYCLEREIP 110
Query: 105 KVVSCLSTC-IFPDKTTYPIDETMVHNGPPHPSNF-GYSHAKRMLDVLNKAYYQQHGVTY 162
+ + S+ + +T+ I+ P N GYS K + D + +
Sbjct: 111 FLYA--SSAATYGGRTSDFIESRE----YEKPLNVYGYS--KFLFDEYVRQILPEANSQI 162
Query: 163 TSVIPCNVFGPHDNYNLESSHVIPGLIRKLYDTIEKGKDQSVFESRARFPPGANSFGLDK 222
NV+GP + + + V L + G+
Sbjct: 163 VGFRYFNVYGPREGHKGSMASVAF----HLNTQLNNGES--------------------- 197
Query: 223 LDLIPFSLFPFCFTGGDEFKVLGTGKPLRQFIYSLDLARLFIWVLREYDSVEPIILSVDE 282
P F G + FK R F+Y D+A + +W L E I ++
Sbjct: 198 ---------PKLFEGSENFK--------RDFVYVGDVADVNLWFL-ENGVSG--IFNLGT 237
Query: 283 KDEVTIAEVAEAIANAFQFKGRITFDTNAAD---GQLKKT-ASNRKLRELRGPGFEFTPF 338
+ VA+A + KG+I + T A LR F
Sbjct: 238 GRAESFQAVADATLAYHK-KGQIEYIPFPDKLKGRYQAFTQADLTNLRAAGYDK-PFKTV 295
Query: 339 QQAVQESVAWFREN 352
+ V E +AW +
Sbjct: 296 AEGVTEYMAWLNRD 309
>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate
metabolism, stress response; HET: NAP ADP BMA; 2.36A
{Escherichia coli} PDB: 2x86_A*
Length = 357
Score = 73.5 bits (181), Expect = 9e-15
Identities = 64/376 (17%), Positives = 115/376 (30%), Gaps = 90/376 (23%)
Query: 3 EEKIILVTGGTGLVGKAI-EKIVKEEEKR----DD-----------ETWIFVSSKEADLS 46
E ++I+VTGG G +G I + + + D+ + I + D
Sbjct: 45 EGRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLNIADYMDKEDFL 104
Query: 47 NLESTQQLFSKYKPTHVIHLAAMVGGLFHN----MSHNLDFFRVNMKINDNVLDTSYKQG 102
+ F + H A + M +N + + +L ++
Sbjct: 105 IQIMAGEEFG--DVEAIFHEGACSSTTEWDGKYMMDNNYQYSK-------ELLHYCLERE 155
Query: 103 VKKVVSCLSTC-IFPDKTTYPIDETMVHNGPPHPSNF-GYSHAKRMLDVLNKAYYQQHGV 160
+ + + S+ + +T+ I+ P N GYS K + D + +
Sbjct: 156 IPFLYA--SSAATYGGRTSDFIESRE----YEKPLNVFGYS--KFLFDEYVRQILPEANS 207
Query: 161 TYTSVIPCNVFGPHDNYNLESSHVIPGLIRKLYDTIEKGKDQSVFESRARFPPGANSFGL 220
NV+GP + + + V L + G+
Sbjct: 208 QIVGFRYFNVYGPREGHKGSMASVAF----HLNTQLNNGES------------------- 244
Query: 221 DKLDLIPFSLFPFCFTGGDEFKVLGTGKPLRQFIYSLDLARLFIWVLREYDSVEPIILSV 280
P F G + FK R F+Y D+A + +W L S I ++
Sbjct: 245 -----------PKLFEGSENFK--------RDFVYVGDVADVNLWFLENGVSG---IFNL 282
Query: 281 DEKDEVTIAEVAEAIANAFQFKGRITFDTNAAD---GQLKKT-ASNRKLRELRGPGFEFT 336
+ VA+A + KG+I + T A LR F
Sbjct: 283 GTGRAESFQAVADATLAYHK-KGQIEYIPFPDKLKGRYQAFTQADLTNLRAAGYDK-PFK 340
Query: 337 PFQQAVQESVAWFREN 352
+ V E +AW +
Sbjct: 341 TVAEGVTEYMAWLNRD 356
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD
UDP; 2.00A {Plesiomonas shigelloides} PDB: 3ru9_A*
3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Length = 351
Score = 73.1 bits (180), Expect = 1e-14
Identities = 61/386 (15%), Positives = 126/386 (32%), Gaps = 93/386 (24%)
Query: 1 MAEEKIILVTGGTGLVG-------------------------KAIEKIVKEEEKRDDETW 35
+ K L+TG G +G ++++ +
Sbjct: 22 IFSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRF 81
Query: 36 IFVSSKEADLSNLESTQQLFSKYKPTHVIHLAAMVGGLFHNMSHNLDFFRVNMKINDNVL 95
F+ E D+ +L + +Q+ HV+H AA+ G + ++ + N+ N+L
Sbjct: 82 CFI---EGDIRDLTTCEQVMKG--VDHVLHQAAL-GSVPRSIVDPITTNATNITGFLNIL 135
Query: 96 DTSYKQGVKKVVSCLSTCIFPDKTTYPIDETMVHNGPPHPSNFGYSHAKRMLDVLNKAYY 155
+ V+ S+ + D P E + +P + Y+ K + ++ + Y
Sbjct: 136 HAAKNAQVQSFTYAASSSTYGDHPALPKVEENI----GNPLSP-YAVTKYVNEIYAQVYA 190
Query: 156 QQHGVTYTSVIPCNVFGPHDNYNLESSHVIPGLIRKLYDTIEKGKDQSVFESRARFPPGA 215
+ +G + NVFG + N + VIP +
Sbjct: 191 RTYGFKTIGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLK--------------------- 229
Query: 216 NSFGLDKLDLIPFSLFPFCFTGGDEFKVLGTGKPLRQFIYSLDLARLFIWVLREYDSVEP 275
GD+ + G G+ R F Y ++ ++ I DS +
Sbjct: 230 ----------------------GDDVYINGDGETSRDFCYIDNVIQMNILSALAKDSAKD 267
Query: 276 IILSVDEKDEVTIAEVAEAIANAFQFKGRITFDTNAA-------DGQLKKT-ASNRKLRE 327
I +V D T+ E++ I + I + G ++ + A K +
Sbjct: 268 NIYNVAVGDRTTLNELSGYIYDEL---NLIHHIDKLSIKYREFRSGDVRHSQADVTKAID 324
Query: 328 LRGPGFE-FTPFQQAVQESVAWFREN 352
L + ++ ++ S+ W+
Sbjct: 325 LL--KYRPNIKIREGLRLSMPWYVRF 348
>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NAD complex, protein-nucleotide comple binding
protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica}
PDB: 2pzl_A* 2pzk_A*
Length = 330
Score = 68.7 bits (169), Expect = 3e-13
Identities = 42/191 (21%), Positives = 67/191 (35%), Gaps = 46/191 (24%)
Query: 7 ILVTGGTGLVG--------KAIEKIV--------KEEEKRDDETWIFVSSKEADLSNLES 50
IL+TGG G +G +I+ K E + E +++
Sbjct: 23 ILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPPVAGLSVI---EGSVTDAGL 79
Query: 51 TQQLFSKYKPTHVIHLAAMVGGLFHNMSHNLDFFRVNMKINDNVLDTSYKQGVKKVV-SC 109
++ F +KPTHV+H AA + + N++ + NV + K GVK+++
Sbjct: 80 LERAFDSFKPTHVVHSAAAY----KDPDDWAEDAATNVQGSINVAKAASKAGVKRLLNF- 134
Query: 110 LSTCIFPDKTTY------PIDETMVHNGPPHPSNFGYSHAKRMLDVLNKAYYQQHGVTYT 163
T Y PI P P Y +K + A+ V
Sbjct: 135 -QTA-----LCYGRPATVPIPIDS----PTAPFTS-YGISKTAGE----AFLMMSDVPVV 179
Query: 164 SVIPCNVFGPH 174
S+ NV GP
Sbjct: 180 SLRLANVTGPR 190
>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins,
biosynthesis, EXO-glycal, rossman transferase; HET: UD1
NAD; 1.90A {Streptomyces chartreusis}
Length = 321
Score = 67.6 bits (166), Expect = 6e-13
Identities = 48/359 (13%), Positives = 105/359 (29%), Gaps = 74/359 (20%)
Query: 7 ILVTGGTGLVGKAI-EKIVKEEEKRDDETWI---FVSSKEADLSNLESTQQ--LFSKYK- 59
IL+TGG G +G + +V +E + + + +
Sbjct: 10 ILITGGAGFIGGHLARALVA----SGEEVTVLDDLRVPPMIPPEGTGKFLEKPVLELEER 65
Query: 60 ----PTHVIHLAAMVGGLFHNMSHNLDFFRVNMKINDNVLDTSYKQGVKKVVSCLSTCIF 115
V HLA+ + + + N+ ++L GV KVV + ++
Sbjct: 66 DLSDVRLVYHLASHK-SVPRSF-KQPLDYLDNVDSGRHLLALCTSVGVPKVVVGSTCEVY 123
Query: 116 PDKTTYPIDETMVHNGPPHPSNFGYSHAKRMLDVLNKAYYQQHGVTYTSVI-PCNVFGPH 174
T P E P P + Y+ +K L+++ A+ + ++ NV+GP
Sbjct: 124 GQADTLPTPEDS----PLSPRSP-YAASKVGLEMVAGAHQRASVAPEVGIVRFFNVYGPG 178
Query: 175 DNYNLESSHVIPGLIRKLYDTIEKGKDQSVFESRARFPPGANSFGLDKLDLIPFSLFPFC 234
+ + ++P L L
Sbjct: 179 ERPDA----LVPRLCANLLT---------------------------------------- 194
Query: 235 FTGGDEFKVLGTGKPLRQFIYSLDLARLFIWVLREYDSVEPIILSVDEKDEVTIAEVAEA 294
+E V G G+ R F Y D+ + + + + +++ +V
Sbjct: 195 ---RNELPVEGDGEQRRDFTYITDVVDKLVALA-NRPLPSVVNFGSGQ--SLSVNDVIRI 248
Query: 295 IANAFQFKGRITFDTNAADGQLKKTASNRKLRELRGPGFEFTPFQQAVQESVAWFRENH 353
+ + + + A G ++ ++ ++ W++
Sbjct: 249 LQATSP-AAEVARKQPRPNEITEFRADTALQTRQIGERSGGIGIEEGIRLTLEWWQSRD 306
>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold,
cupid domain, short-chain dehydrogenase/reduc NADPH;
2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A
Length = 369
Score = 67.3 bits (164), Expect = 1e-12
Identities = 40/187 (21%), Positives = 67/187 (35%), Gaps = 37/187 (19%)
Query: 7 ILVTGGTGLVGKA-IEKIVKEEEKRDDETWIFVSSKEADLSNLESTQQLFSKYKPTHVIH 65
I++TG G VGK + + IF ++ LES K ++H
Sbjct: 3 IVITGAKGFVGKNLKADLTSTTDHH-----IFEVHRQTKEEELESALL-----KADFIVH 52
Query: 66 LAAMVGGLFHNMSHNLDFFRVNMKINDNVLDTSYKQGVKKVVSCLSTCIFPDKTTYPIDE 125
LA + + H+ +F N+ D+VLD + K + S+
Sbjct: 53 LAGV-----NRPEHDKEFSLGNVSYLDHVLDILTRNTKKPAILLSSS------------- 94
Query: 126 TMVHNGPPHPSNFGYSHAKRMLDVLNKAYYQQHGVTYTSVIPCNVFGPHDNYNLESSHVI 185
+ +P Y +K + L + Y +++G T N+FG N S VI
Sbjct: 95 --IQATQDNP----YGESKLQGEQLLREYAEEYGNTVYIYRWPNLFGKWCKPNYNS--VI 146
Query: 186 PGLIRKL 192
K+
Sbjct: 147 ATFCYKI 153
>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD
binding, isomerase; HET: NAD; 2.55A {Helicobacter
pylori}
Length = 362
Score = 66.5 bits (163), Expect = 2e-12
Identities = 55/393 (13%), Positives = 108/393 (27%), Gaps = 118/393 (30%)
Query: 3 EEKIILVTGGTGLVG------------------------------KAIEKIVKEEEKRDD 32
E + IL+TGG G VG + +
Sbjct: 9 ENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGF 68
Query: 33 ETWIFVSSKEADLSNLESTQQLFSKYKPTHVIHLAAMVGGLFHN----MSHNLDFFRVNM 88
+ + AD++N ++L K ++ H AA+ N M N F
Sbjct: 69 KGEVI----AADINNPLDLRRLE-KLHFDYLFHQAAVSDTTMLNQELVMKTNYQAFL--- 120
Query: 89 KINDNVLDTSYKQGVKKVVSCLSTCIFPDKTTY-----PIDETMVHNGPPHPSNF-GYSH 142
N+L+ + + K + + S+ Y P P N G+S
Sbjct: 121 ----NLLEIARSKKAKVIYA--SSA-----GVYGNTKAPNVVGK----NESPENVYGFS- 164
Query: 143 AKRMLDVLNKAYYQQHGVTYTSVIPCNVFGPHDNYNLESSHVIPGLIRKLYDTIEKGKDQ 202
K +D + + NV+GP + Y +++ ++ +L K
Sbjct: 165 -KLCMDEF--VLSHSNDNVQVGLRYFNVYGPREFYKEKTASMVL----QLALGAMAFK-- 215
Query: 203 SVFESRARFPPGANSFGLDKLDLIPFSLFPFCFTGGDEFKVLGTGKPLRQFIYSLDLARL 262
LF G+ LR F+Y D+ +
Sbjct: 216 ------------------------EVKLF-------------EFGEQLRDFVYIEDVIQA 238
Query: 263 FIWVLREYDSVEPIILSVDEKDEVTIAEVAEAIANAFQFKGRITFDTNAADGQLKKT-AS 321
+ + + + +V + E+ + ++T+ N K T A
Sbjct: 239 NVKAM-KAQKSG--VYNVGYSQARSYNEIVSILKEHLG-DFKVTYIKNPYAFFQKHTQAH 294
Query: 322 NRKLRELRGPGFE-FTPFQQAVQESVAWFRENH 353
+ + +++ +
Sbjct: 295 IEPTILDL--DYTPLYDLESGIKDYLPHIHAIF 325
>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain
dehydrogenase/reductase, rossmann fold, BIO protein;
HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2
PDB: 1i2c_A* 1i2b_A* 1qrr_A*
Length = 404
Score = 65.9 bits (161), Expect = 3e-12
Identities = 55/362 (15%), Positives = 99/362 (27%), Gaps = 73/362 (20%)
Query: 20 IEKIVKEEEKRDDETWIFVSSKEADLSNLESTQQLFSKYKPTHVIHLAAM--VGGLFHNM 77
I + + ++ D+ + E + F ++P V+H +
Sbjct: 64 IHDRISRWKALTGKSIELY---VGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDR 120
Query: 78 SHNLDFFRVNMKINDNVLDTSYKQGVKKVVSCLSTCIFPDKTTY-----PIDETMV---H 129
S + N+ NVL + G + + L T Y I+E + H
Sbjct: 121 SRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGT-----MGEYGTPNIDIEEGYITITH 175
Query: 130 NG-------PPHPSNFGYSHAKRMLDVLNKAYYQQHGVTYTSVIPCNVFGPHDNYNLESS 182
NG P S+F Y +K + G+ T + V+G
Sbjct: 176 NGRTDTLPYPKQASSF-YHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVK-------- 226
Query: 183 HVIPGLIRKLYDTIEKGKDQSVFESRARFPPGANSFGLDKLDLIPFSLFPFCF--TGGDE 240
T E + N D + +L FC G
Sbjct: 227 ------------TDETEMHEE----------LRNRLDYD--AVFGTALNRFCVQAAVGHP 262
Query: 241 FKVLGTGKPLRQFIYSLDLARLFIWVLREYDSVEP--IILSVDEKDEVTIAEVAEAIANA 298
V G G R ++ D + + + E+ ++ E+A + A
Sbjct: 263 LTVYGKGGQTRGYLDIRDTVQCVEIAIANPAKAGEFRVFNQFTEQ--FSVNELASLVTKA 320
Query: 299 FQFKGR-----ITFDTNAADGQLKKTASNRKLRELRGPGFEFT-PFQQAVQESVAWFREN 352
G + + A + KL EL G E + + + +
Sbjct: 321 GSKLGLDVKKMTVPNPRVEAEEHYYNAKHTKLMEL---GLEPHYLSDSLLDSLLNFAVQF 377
Query: 353 HS 354
Sbjct: 378 KD 379
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370,
Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2;
2.00A {Bacteroides thetaiotaomicron}
Length = 227
Score = 58.9 bits (143), Expect = 2e-10
Identities = 28/188 (14%), Positives = 60/188 (31%), Gaps = 35/188 (18%)
Query: 1 MAEEKIILVTGGTGLVGKAIEK-----------IV----KEEEKRDDETWIFVSSKEADL 45
M + K I++ G +G VG A+ +V K + + + +AD+
Sbjct: 1 MEKVKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIENEHLKVK-----KADV 55
Query: 46 SNLESTQQLFSKYKPTHVIHLAAMVGGLFHNMSHNLDFFRVNMKINDNVLDTSYKQGVKK 105
S+L+ ++ VI N D + +K+ ++D K GV +
Sbjct: 56 SSLDEVCEVCKGA--DAVISAFNPGWN-------NPDIYDETIKVYLTIIDGVKKAGVNR 106
Query: 106 VVSCLSTCIFPDKTTYPIDETMVHNGPPHPSNFGYSHAKRMLDVLNKAYYQQHGVTYTSV 165
+ + + + + P N K + + ++ + +
Sbjct: 107 FLMVGGA-----GSLFIAPGLRLMDSGEVPENI-LPGVKALGEFYLNFLMKEKEIDWVFF 160
Query: 166 IPCNVFGP 173
P P
Sbjct: 161 SPAADMRP 168
>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase,
oxidoreductase, SDR, cardenolides, cardiac glycosides;
HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*
Length = 364
Score = 58.6 bits (141), Expect = 8e-10
Identities = 44/219 (20%), Positives = 77/219 (35%), Gaps = 48/219 (21%)
Query: 5 KIILVTGGTGLVGKAI-------------EKIV-----KEEEKRDDETWIFVSSKEADLS 46
+ L+ G TG++G ++ K+ +D +V D+S
Sbjct: 2 SVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAWHEDNPINYVQ---CDIS 58
Query: 47 NLESTQQLFSKYKPTHVIHLAAMVGGLFHNMSHNLDFFRVNMKINDNVLDT--------- 97
+ + +Q S V H+ + + N S + N K+ NVLD
Sbjct: 59 DPDDSQAKLSPLTD--VTHVFYVT---WANRSTEQENCEANSKMFRNVLDAVIPNCPNLK 113
Query: 98 --SYKQGVKKVVSCLSTCIFPDKTTYPIDETMVHNGPPHPS-NFGYSHAKRMLDVLNKAY 154
S + G K + + + P E + P NF Y ML +
Sbjct: 114 HISLQTGRKHYMGPFESYGKIESHDPPYTEDL----PRLKYMNFYYDLEDIML----EEV 165
Query: 155 YQQHGVTYTSVIPCNVFG--PHDNYNLESSHVIPGLIRK 191
++ G+T++ P N+FG P+ NL + + I K
Sbjct: 166 EKKEGLTWSVHRPGNIFGFSPYSMMNLVGTLCVYAAICK 204
>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint
center for structural genomics, JCSG, protein structu
initiative; HET: NAI UNL; 2.05A {Clostridium
acetobutylicum} SCOP: c.2.1.2
Length = 292
Score = 55.2 bits (134), Expect = 7e-09
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 7 ILVTGGTGLVGKAIEKIVKEEEKRDDETWIFVSSKEADLSNLESTQQLFSKYKPTHVIHL 66
IL+TG G +G+ I+K +K + + I ++ D++N+ + + F++ KP VI+
Sbjct: 15 ILITGANGQLGREIQKQLKGK----NVEVIPTDVQDLDITNVLAVNKFFNEKKPNVVINC 70
Query: 67 AA 68
AA
Sbjct: 71 AA 72
>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics,
infectious diseases, bacillus anthracis STR. AMES,
rhamnose biosynthetic pathway; HET: NAP; 2.65A
{Bacillus anthracis}
Length = 287
Score = 54.8 bits (133), Expect = 1e-08
Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 7 ILVTGGTGLVGKAIEKIVKEEEKRDDETWIFVSSKEADLSNLESTQQLFSKYKPTHVIHL 66
+++TG G +GK +++ + E + K D++N+ QQ+ + +P +IH
Sbjct: 8 VIITGANGQLGKQLQEELNPE----EYDIYPFDKKLLDITNISQVQQVVQEIRPHIIIHC 63
Query: 67 AA 68
AA
Sbjct: 64 AA 65
>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase;
2.25A {Homo sapiens} PDB: 2ydx_A
Length = 315
Score = 54.2 bits (131), Expect = 2e-08
Identities = 15/66 (22%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 7 ILVTGGTGLVGKAIEKIVKE---EEKRDDETWIFVSSKEADLSNLESTQQLFSKYKPTHV 63
+LVTG TGL+G+A+ K ++ ++ +L + + + ++P +
Sbjct: 5 VLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRARPKFEQVNLLDSNAVHHIIHDFQPHVI 64
Query: 64 IHLAAM 69
+H AA
Sbjct: 65 VHCAAE 70
>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha,
beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus
tokodaii}
Length = 273
Score = 53.7 bits (130), Expect = 2e-08
Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 7 ILVTGGTGLVGKAIEKIVKE--EEKRDDETWIFVSSKEADLSNLESTQQLFSKYKPTHVI 64
L+TG +G +G + +++ E E + + + DL++ + K +P +I
Sbjct: 3 TLITGASGQLGIELSRLLSERHEVIKVYNSSEIQGGYKLDLTDFPRLEDFIIKKRPDVII 62
Query: 65 HLAAM 69
+ AAM
Sbjct: 63 NAAAM 67
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.4 bits (133), Expect = 2e-08
Identities = 53/261 (20%), Positives = 88/261 (33%), Gaps = 74/261 (28%)
Query: 50 STQQLFSKYKPTHVIHLAAMVGGLFHNMSHNLDFFRVNMKINDNVLDTSYKQGVKKVVSC 109
+ +L S K H +V + + + + F V+++ + + GV+
Sbjct: 259 TPGELRSYLKGA-TGHSQGLVTAVAIAETDSWESFFVSVR---KAITVLFFIGVR----- 309
Query: 110 LSTCIFPDKTTYP--IDETMVHN-GPPHPSNFGYSHAKRMLDV--LNKAYYQQHGVTYTS 164
+P+ + P +++++ +N G P P ML + L + Q + V T
Sbjct: 310 -CYEAYPNTSLPPSILEDSLENNEGVPSP----------MLSISNLTQEQVQDY-VNKT- 356
Query: 165 VIPCNVFGPHDN------YNLESSHVIPGLIRKLY---DTIEK-----GKDQSVFESRAR 210
N P N + V+ G + LY T+ K G DQS R
Sbjct: 357 ----NSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSER 412
Query: 211 FPPGANSFGLDKLDL---IPF-S--LFP-------------FCFTGGD-EFKVLGT--GK 248
+N F L PF S L P F D + V T G
Sbjct: 413 KLKFSNRF------LPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGS 466
Query: 249 PLRQFIYSLDLARLFIWVLRE 269
LR S+ R+ ++R
Sbjct: 467 DLRVLSGSI-SERIVDCIIRL 486
Score = 42.7 bits (100), Expect = 2e-04
Identities = 68/428 (15%), Positives = 117/428 (27%), Gaps = 165/428 (38%)
Query: 35 WIFVS-SKEADLSNL-ESTQQLFSKYKPTHVIHLAAMVGGLFHNMSHNLDFFRVNMKIND 92
+ S +E L E T+ + +PT L F L + V+ +
Sbjct: 27 FFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGK----F------LGY--VSSLVEP 74
Query: 93 NVLDTSYKQGVKKVVSCLSTCIFPDKTTYPIDETMVHN---GPPHPSNFGYSHAKRMLDV 149
+ + + Q + ++ C D +H ++ K ++
Sbjct: 75 SKV-GQFDQVLNLCLTEFENCYLEGN-----D---IHALAAKLLQENDTTLVKTKELI-- 123
Query: 150 LNKAYYQQHGVTYTSVIPCN-----------------VF---GPHDNYNLESSHVIPGLI 189
K Y + + +F G D+Y E +
Sbjct: 124 --KNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEE--------L 173
Query: 190 RKLYDT--------IEKGKDQSVFESRARFPPGANSF---GLDK---------------L 223
R LY T I+ R A GL+ L
Sbjct: 174 RDLYQTYHVLVGDLIKFS--AETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYL 231
Query: 224 DLIPFSLFP------------FCFTGG---DEFK-----VLGTGKPL------------R 251
IP S P G E + G + L
Sbjct: 232 LSIPIS-CPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWE 290
Query: 252 QFIYSLDLA-RLFIWV-LR---EY-----------DSVE-------PIILSVDEKDEVTI 288
F S+ A + ++ +R Y DS+E P +LS+ + +T
Sbjct: 291 SFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSP-MLSI--SN-LTQ 346
Query: 289 AEVAEAIA--NAFQFKGR---ITFDTNAAD-----G---QLKKTASNRKLRELRGP-GFE 334
+V + + N+ G+ I+ N A G L N LR+ + P G +
Sbjct: 347 EQVQDYVNKTNSHLPAGKQVEISL-VNGAKNLVVSGPPQSLY--GLNLTLRKAKAPSGLD 403
Query: 335 FT--PFQQ 340
+ PF +
Sbjct: 404 QSRIPFSE 411
Score = 32.7 bits (74), Expect = 0.25
Identities = 22/120 (18%), Positives = 46/120 (38%), Gaps = 38/120 (31%)
Query: 15 LVGKAIEKIVKEEEKRDDETW--------IFVSSKEADLSNLEST------QQLFS---- 56
L+ A + I ++ +++ ++ ++ + +DL L + +
Sbjct: 431 LLVPASDLI-NKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVK 489
Query: 57 -----KYKPTHVIHL----AAMVGGLFHNMSHNLD--FFRV----NMKINDNVLDTSYKQ 101
++K TH++ A+ +G L H N D RV + IN + D +KQ
Sbjct: 490 WETTTQFKATHILDFGPGGASGLGVLTH---RNKDGTGVRVIVAGTLDINPD-DDYGFKQ 545
Score = 29.2 bits (65), Expect = 2.4
Identities = 23/158 (14%), Positives = 46/158 (29%), Gaps = 57/158 (36%)
Query: 225 LIPFSLFPFCFTGGDEF-KVLGTGKPLRQFIY------SLDLARLFI------------- 264
L+P + F ++F K+L P F +L F+
Sbjct: 21 LVPTASFFIASQLQEQFNKILPE--PTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVG 78
Query: 265 -------WVLREYDS-------VEPIILSVDEKDEVTIAEVAEAIANAFQFKGRITFD-- 308
L E+++ + + + ++++ T+ + E I N RI
Sbjct: 79 QFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYIT--ARIMAKRP 136
Query: 309 ----------TNAADGQLKKTA-------SNRKLRELR 329
+G + A ++ ELR
Sbjct: 137 FDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELR 174
>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase,
structural genomics, STRU genomics consortium, SGC,
lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP:
c.2.1.2 PDB: 4ef7_A*
Length = 343
Score = 53.5 bits (129), Expect = 3e-08
Identities = 64/325 (19%), Positives = 116/325 (35%), Gaps = 73/325 (22%)
Query: 5 KIILVTGGTGLVGK-AIEKIVKEEEK---RDDETWIFVSSKEADLSNLES---------- 50
K IL+TGG G VG +K++ + + D+ F + ++ ++ +
Sbjct: 28 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDN----FFTGRKRNVEHWIGHENFELINHD 83
Query: 51 -TQQLFSKYKPTHVIHLAAMVGGLFHNMSHNLDFFRVNMKINDNVLDTSYKQGVKKVVSC 109
+ L+ + + HLA+ + M + + + N N+L + + G + +++
Sbjct: 84 VVEPLYIEVD--QIYHLASPAS-PPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLA- 139
Query: 110 LST-CIFPDKTTYPIDETMVHNGPPHPSNFGYSHAKRMLDVLNKAYYQQHGVTYTSVIPC 168
ST ++ D +P E + P Y KR+ + + AY +Q GV
Sbjct: 140 -STSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIF 198
Query: 169 NVFGPHDNYNLESSHVIPGLIRKLYDTIEKGKDQSVFESRARFPPGANSFGLDKLDLIPF 228
N FGP ++ V+ I + +G+ +V+
Sbjct: 199 NTFGP--RMHMNDGRVVSNFILQAL----QGEPLTVY----------------------- 229
Query: 229 SLFPFCFTGGDEFKVLGTGKPLRQFIYSLDLARLFIWVLREYDSVEPIILSVDEKDEVTI 288
G+G R F Y DL + L + P+ L +E TI
Sbjct: 230 ----------------GSGSQTRAFQYVSDLVNGLV-ALMNSNVSSPVNLGNP--EEHTI 270
Query: 289 AEVAEAIANAFQFKGRITFDTNAAD 313
E A+ I N I F + A D
Sbjct: 271 LEFAQLIKNLVGSGSEIQFLSEAQD 295
>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose
metabolism, isomerase, NAD, spine; HET: NAD; 2.7A
{Bacillus anthracis}
Length = 330
Score = 52.8 bits (128), Expect = 5e-08
Identities = 37/186 (19%), Positives = 65/186 (34%), Gaps = 47/186 (25%)
Query: 5 KIILVTGGTGLVG--------KAIEKIV--------KEEEKRDDETWIFVSSKEADLSNL 48
IL+ GG G +G +V E+ + + DL +
Sbjct: 2 NSILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHEDAITEGAKFY-----NGDLRDK 56
Query: 49 ESTQQLFSKYKPTHVIHLAAM--VGGLFHNMSHNLDFFRVNMKINDNVLDTSYKQGVKKV 106
+ +F++ V+H AA VG +M L ++ N+ +L+ + V K
Sbjct: 57 AFLRDVFTQENIEAVMHFAADSLVG---VSMEKPLQYYNNNVYGALCLLEVMDEFKVDKF 113
Query: 107 V-SCLSTCIFPDKTTY------PIDETMVHNGPPHPSN-FGYSHAKRMLDVLNKAYYQQH 158
+ S ST TY I E +P+N +G + K ++ + Y Q
Sbjct: 114 IFS--STA-----ATYGEVDVDLITEET----MTNPTNTYGET--KLAIEKMLHWYSQAS 160
Query: 159 GVTYTS 164
+ Y
Sbjct: 161 NLRYKI 166
>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for
infectious disease, ssgcid, isomerase, NAD; HET: NAD
GUD; 1.90A {Burkholderia pseudomallei 1710B}
Length = 341
Score = 52.1 bits (126), Expect = 1e-07
Identities = 44/185 (23%), Positives = 70/185 (37%), Gaps = 66/185 (35%)
Query: 1 MAEEKIILVTGGTGLVG----------------------------KAIEKIVKEEEKRDD 32
M+ + ILVTGG G +G IEKI +
Sbjct: 2 MSTKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKITGKTPA--- 58
Query: 33 ETWIFVSSKEADLSNLESTQQLFSKYKPTHVIHLAAM--VGGLFHNMSHNLDFFRVNMKI 90
F E D+S+ + ++F + T IH AA+ VG +++ ++++R N+
Sbjct: 59 ----FH---ETDVSDERALARIFDAHPITAAIHFAALKAVG---ESVAKPIEYYRNNLDS 108
Query: 91 NDNVLDTSYKQGVKKVV---SCLSTCIFPDKTTY------PIDETMVHNGPPHPSNFGYS 141
++L ++ VK++V S T Y PIDET P +N Y
Sbjct: 109 LLSLLRVMRERAVKRIVFSSSA---------TVYGVPERSPIDETF----PLSATN-PYG 154
Query: 142 HAKRM 146
K M
Sbjct: 155 QTKLM 159
>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad,
SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A
{Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A*
2gna_A*
Length = 344
Score = 50.3 bits (121), Expect = 4e-07
Identities = 35/143 (24%), Positives = 59/143 (41%), Gaps = 31/143 (21%)
Query: 1 MAEEKIILVTGGTGLVGKA----------IEKIV---KEEEKRDDETWIFVSSKE----A 43
M + + IL+TGGTG GK +KI+ ++E K+ + F +
Sbjct: 18 MLDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFNDPRMRFFIG 77
Query: 44 DLSNLESTQQLFSKYKPTHVIHLAAM--VGGL-FHNMSHNLDFFRVNMKINDNVLDTSYK 100
D+ +LE IH AA+ V ++ + + + N+ NV++ K
Sbjct: 78 DVRDLERLNYALEG--VDICIHAAALKHVPIAEYNPL----ECIKTNIMGASNVINACLK 131
Query: 101 QGVKKVVSCLSTCIFPDKTTYPI 123
+ +V+ LST DK PI
Sbjct: 132 NAISQVI-ALST----DKAANPI 149
>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N
biosynthes methyltransferase, transferase; 2.3A
{Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A
1z75_A 1z7b_A 1z74_A
Length = 345
Score = 50.5 bits (121), Expect = 4e-07
Identities = 65/385 (16%), Positives = 130/385 (33%), Gaps = 89/385 (23%)
Query: 7 ILVTGGTGLVGKA-IEKIVKE---------------EEKRDDETWIFVSSKEADLSNLES 50
+L+ G G +G E++++E + + FV E D+S
Sbjct: 3 VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFV---EGDISIHSE 59
Query: 51 TQQLFSKYKPTHVIHLAAMVGGLFHNMSHNLDFFRVNMKINDNVLDTSYKQGVKKVVSCL 110
+ K K V+ L A+ + L F ++ + N ++ K + +
Sbjct: 60 WIEYHVK-KCDVVLPLVAIAT-PIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFP-- 115
Query: 111 STC-IFPDKTTYPIDETM--VHNGPPHPSNFGYSHAKRMLDVLNKAYYQQHGVTYTSVIP 167
ST ++ + DE + GP + + YS +K++LD + AY ++ G+ +T P
Sbjct: 116 STSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRP 175
Query: 168 CNVFGP----HDNYNLESSHVIPGLIRKLYDTIEKGKDQSVFESRARFPPGANSFGLDKL 223
N GP + + SS I LI L +G +
Sbjct: 176 FNWMGPRLDNLNAARIGSSRAITQLILNLV----EGSPIKLI------------------ 213
Query: 224 DLIPFSLFPFCFTGGDEFKVLGTGKPLRQFIYSLDLARLFIWVLR-EYDSVEPIILSV-D 281
GK R F D ++ + + I+++ +
Sbjct: 214 ---------------------DGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGN 252
Query: 282 EKDEVTIAEVAEAIANAFQFKGRITFDTNAADGQLKKTASNRKLRE----LRGP------ 331
++E +I E+ E + +F+ A ++ +++S R P
Sbjct: 253 PENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNAH 312
Query: 332 ---GFE-FTPFQQAVQESVAWFREN 352
+E Q+ + E++ +F
Sbjct: 313 RCLDWEPKIDMQETIDETLDFFLRT 337
>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG;
1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A*
1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A*
2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A*
1a9y_A*
Length = 338
Score = 49.0 bits (118), Expect = 1e-06
Identities = 34/179 (18%), Positives = 56/179 (31%), Gaps = 65/179 (36%)
Query: 7 ILVTGGTGLVG----------------------------KAIEKIVKEEEKRDDETWIFV 38
+LVTGG+G +G IE++ + FV
Sbjct: 3 VLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPT-------FV 55
Query: 39 SSKEADLSNLESTQQLFSKYKPTHVIHLAAM--VGGLFHNMSHNLDFFRVNMKINDNVLD 96
E D+ N ++ + VIH A + VG ++ L+++ N+ ++
Sbjct: 56 ---EGDIRNEALMTEILHDHAIDTVIHFAGLKAVG---ESVQKPLEYYDNNVNGTLRLIS 109
Query: 97 TSYKQGVKKVV---SCLSTCIFPDKTTY------PIDETMVHNGPPHPSNFGYSHAKRM 146
VK + S T Y P E+ P P Y +K M
Sbjct: 110 AMRAANVKNFIFSSSA---------TVYGDNPKIPYVESFPTGTPQSP----YGKSKLM 155
>3slg_A PBGP3 protein; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, melioidosis,
glanders; 2.10A {Burkholderia pseudomallei}
Length = 372
Score = 48.6 bits (116), Expect = 1e-06
Identities = 39/214 (18%), Positives = 80/214 (37%), Gaps = 33/214 (15%)
Query: 3 EEKIILVTGGTGLVGKA-IEKIVKE---------------EEKRDDETWIFVSSKEADLS 46
+ K +L+ G G +G ++I++ + E F E D++
Sbjct: 23 KAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVKHERMHFF---EGDIT 79
Query: 47 NLESTQQLFSKYKPTHVIHLAAMVGGLFHNMSHNLDFFRVNMKINDNVLDTSYKQGVKKV 106
+ + K K ++ L A+ + L F ++ + N ++ ++ K G V
Sbjct: 80 INKEWVEYHVK-KCDVILPLVAIAT-PATYVKQPLRVFELDFEANLPIVRSAVKYGKHLV 137
Query: 107 VSCLSTC----IFPDKTTYPIDETMVHNGPPHPSNFGYSHAKRMLDVLNKAYYQQHGVTY 162
ST + D+ P + + GP + + Y+ +K+++D + Y G+ +
Sbjct: 138 FP--STSEVYGMCADEQFDPDASALTY-GPINKPRWIYACSKQLMDRVIWGYG-MEGLNF 193
Query: 163 TSVIPCNVFGP----HDNYNLESSHVIPGLIRKL 192
T P N GP SS V+ + +
Sbjct: 194 TLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHI 227
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.1 bits (116), Expect = 2e-06
Identities = 67/407 (16%), Positives = 113/407 (27%), Gaps = 139/407 (34%)
Query: 4 EKIILVTGGTGLVGK---AIE--KIVKEEEKRDDET-WIFVSSKEADLSNLESTQQLFSK 57
K +L+ G G GK A++ K + K D + W+ + + + + LE Q+L +
Sbjct: 150 AKNVLIDGVLG-SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208
Query: 58 YKPTHVIHLAAMVG-------------GLFHNMSHN--------------LDFFRVNMKI 90
P L + + + F ++ KI
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI 268
Query: 91 -----NDNVLDTSYKQGVKKVV------------------SCLSTCIFPD-----KTTYP 122
V D + L C D TT P
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD-CRPQDLPREVLTTNP 327
Query: 123 -----IDETMVHNGPPHPSNFGYSHAKRM-------LDVLN----KAYYQQHGVTYTSV- 165
I E + +G N+ + + ++ L+VL + + + V S
Sbjct: 328 RRLSIIAE-SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH 386
Query: 166 IPCNVFG-------PHD---------NYNL------ESSHVIPGLIRKLYDTIEKGKD-- 201
IP + D Y+L ES+ IP + +L +E
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH 446
Query: 202 QSVFES---RARFPPGANSFGLDKLD----------LIP------FSLFPFCFTGGD-EF 241
+S+ + F + LD L +LF F D F
Sbjct: 447 RSIVDHYNIPKTFDS--DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL--DFRF 502
Query: 242 ---KVLGTGKPLRQFIYSLDLARLFIWVLREYDSVEPIILSVDEKDE 285
K+ L+ + L+ Y +P I D K E
Sbjct: 503 LEQKIRHDSTAWNASGSILNT----LQQLKFY---KPYICDNDPKYE 542
Score = 42.1 bits (98), Expect = 3e-04
Identities = 39/342 (11%), Positives = 86/342 (25%), Gaps = 82/342 (23%)
Query: 75 HNMSHNLDFFRVNMKINDNVLDTSYKQGVKKVVSCLSTCIFPDK--TTYPIDETMVHNGP 132
H+ H++DF + + + ++ C P + ID +
Sbjct: 1 HHHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHII---MS 57
Query: 133 PHPSNFGY-----------SHAKRML-DVLNKAY----------YQQHGVTYTSVIPC-- 168
+ ++ + +VL Y +Q + I
Sbjct: 58 KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD 117
Query: 169 ---NVFGPHDNYNLESSHVIPGLIRKLY-DTIEK----------GKDQSV--------FE 206
N YN+ L + L K GK + ++
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK--TWVALDVCLSYK 175
Query: 207 SRARFPPGAN--SFG-LDKLDLIPFSLFPFCFTGGDEFKVLGTG-KPLRQFIYSLDLARL 262
+ + + + + + L + + ++ I+S+
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235
Query: 263 FIWVLREY-DSVEPIILSVDEKDEVTIAEVAEAIANAFQFKGRI---TFDTNAADGQLKK 318
+ + Y + + ++L V A+ AF +I T D
Sbjct: 236 RLLKSKPYENCL--LVL-----LNVQNAKAWN----AFNLSCKILLTTRFKQVTDFLSAA 284
Query: 319 TASNRKLRELRGPGFEFTPFQQAVQESVAWFRE--NHSVARL 358
T ++ L TP E + + + L
Sbjct: 285 TTTHISLDHHSMT---LTP-----DEVKSLLLKYLDCRPQDL 318
Score = 37.1 bits (85), Expect = 0.009
Identities = 45/382 (11%), Positives = 96/382 (25%), Gaps = 106/382 (27%)
Query: 21 EKIVKEEEKRDDETWIFVSSKEADLSNLESTQQLFSKY-----KPTHVIHLAAM----VG 71
I E+ + T +++ ++ L + Q+F+KY +P + A +
Sbjct: 96 SPIKTEQRQPSMMTRMYIEQRD----RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAK 151
Query: 72 GLF-HNM---------SHNLDFFRVNMKINDNV--LDTSYKQGVKKVVSCLST-CIFPDK 118
+ + ++V K++ + L+ + V+ L D
Sbjct: 152 NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP 211
Query: 119 TTYPIDETMVHNGPPHPSNFGYSHAKRML-------------DVLNKAYYQQHG------ 159
+ + + + +R+L +V N +
Sbjct: 212 NWTSRSDHSSN--IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL 269
Query: 160 VT--YTSVIPCNVFGPHDNYNLESSHVIPGLIRKLYDTIEKGKDQSVFESRARFPPGANS 217
+T + V + ++ H L + +S+
Sbjct: 270 LTTRFKQVT--DFLSAATTTHISLDHHSMTL--------TPDEVKSLL---------LKY 310
Query: 218 FGLDKLDL-------IPF--SLFPFCFTGG----DEFKVLGTGKPLRQFIYSLDLARLFI 264
DL P S+ G D +K + K L I L L
Sbjct: 311 LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK-LTTII-ESSLNVLEP 368
Query: 265 WVLREY--------DSVEPI---ILSV--DEKDEVTIAEVAEAIANAFQFKGRITFDTNA 311
R+ S I +LS+ + + + N +
Sbjct: 369 AEYRKMFDRLSVFPPSA-HIPTILLSLIWFDVIK----SDVMVVVNKLHKYSLVEKQPKE 423
Query: 312 A-----DGQLKKTASNRKLREL 328
+ L+ L
Sbjct: 424 STISIPSIYLELKVKLENEYAL 445
Score = 30.2 bits (67), Expect = 1.3
Identities = 36/332 (10%), Positives = 78/332 (23%), Gaps = 131/332 (39%)
Query: 7 ILVTGGTGLVGKAIEKIVKEEEKRDDETWIFVSSKEADLSNLESTQQLFSKY-------- 58
IL+T V + D + + + L KY
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE---------VKSLLLKYLDCRPQDL 318
Query: 59 ----KPTHVIHLAAMVGGLFHNMSHNLDFFR-VNMKINDNVLDTSYKQ------------ 101
T+ L+ ++ + D ++ VN ++++S
Sbjct: 319 PREVLTTNPRRLS-IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR 377
Query: 102 ------GVK---KVVSCL------------------STCIF--PDKTTYPI--------- 123
++S + + + P ++T I
Sbjct: 378 LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV 437
Query: 124 ---DETMVH---------------NGPPHPSNFGYS------HAKRM-----LDVLNKAY 154
+E +H + P Y H K + + + +
Sbjct: 438 KLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF 497
Query: 155 ----YQQHGVTYTSVIPCNVFGPHDN-------YNLESSHVI---PGLIRKLYDTIEKGK 200
+ + + + S N G N Y ++ P R + ++
Sbjct: 498 LDFRFLEQKIRHDS-TAWNASGSILNTLQQLKFY---KPYICDNDPKYERLVNAILD--- 550
Query: 201 DQSVFESRARFPPGANSFGLDKLDLIPFSLFP 232
F + N DL+ +L
Sbjct: 551 ----FLPK----IEENLICSKYTDLLRIALMA 574
>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism,
isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces
cerevisiae} SCOP: b.30.5.4 c.2.1.2
Length = 699
Score = 48.2 bits (115), Expect = 3e-06
Identities = 42/182 (23%), Positives = 63/182 (34%), Gaps = 56/182 (30%)
Query: 1 MAEEKIILVTGGTGLVG----------------------------KAIEKIVKEEEKRDD 32
+ KI+LVTGG G +G +E + K
Sbjct: 8 ESTSKIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHIP--- 64
Query: 33 ETWIFVSSKEADLSNLESTQQLFSKYKPTHVIHLAAM--VGGLFHNMSHNLDFFRVNMKI 90
F E DL + + +++F +YK VIH A + VG + L ++ N+
Sbjct: 65 ----FY---EVDLCDRKGLEKVFKEYKIDSVIHFAGLKAVG---ESTQIPLRYYHNNILG 114
Query: 91 NDNVLDTSYKQGVKKVV---SCL---STCIFPDKTTYPIDETMVHNGPPHPSNFGYSHAK 144
+L+ + V K V S FP+ PI E P P+N Y H K
Sbjct: 115 TVVLLELMQQYNVSKFVFSSSATVYGDATRFPNMI--PIPEEC----PLGPTN-PYGHTK 167
Query: 145 RM 146
Sbjct: 168 YA 169
>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold,
sugar-nucleotide-binding domain; HET: NAD; 2.00A
{Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A*
1kc3_A* 1kbz_A*
Length = 299
Score = 47.2 bits (113), Expect = 3e-06
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 7 ILVTGGTGLVGKAIEKIVKEEEKRDDETWIFVSSKE--ADLSNLESTQQLFSKYKPTHVI 64
IL+ G TG VG +++ + + + V SKE D SN + + K +P ++
Sbjct: 3 ILLFGKTGQVGWELQRSLAP---VGNLIALDVHSKEFCGDFSNPKGVAETVRKLRPDVIV 59
Query: 65 HLAA 68
+ AA
Sbjct: 60 NAAA 63
>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia,
isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP:
c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A*
1i3n_A*
Length = 348
Score = 44.8 bits (107), Expect = 2e-05
Identities = 41/187 (21%), Positives = 66/187 (35%), Gaps = 71/187 (37%)
Query: 5 KIILVTGGTGLVG----------------------------------KAIEKIVKEEEKR 30
+ +LVTGG G +G + ++++ +
Sbjct: 3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVE- 61
Query: 31 DDETWIFVSSKEADLSNLESTQQLFSKYKPTHVIHLAAM--VGGLFHNMSHNLDFFRVNM 88
F E D+ + + Q+LF KY VIH A + VG ++ LD++RVN+
Sbjct: 62 ------FE---EMDILDQGALQRLFKKYSFMAVIHFAGLKAVG---ESVQKPLDYYRVNL 109
Query: 89 KINDNVLDTSYKQGVKKVV---SCLSTCIFPDKTTY------PIDETMVHNGPPHPSNFG 139
+L+ GVK +V S T Y P+DE G +P
Sbjct: 110 TGTIQLLEIMKAHGVKNLVFSSSA---------TVYGNPQYLPLDEAHPTGGCTNP---- 156
Query: 140 YSHAKRM 146
Y +K
Sbjct: 157 YGKSKFF 163
>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription;
HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB:
2fmu_A
Length = 242
Score = 44.0 bits (104), Expect = 3e-05
Identities = 18/121 (14%), Positives = 38/121 (31%), Gaps = 21/121 (17%)
Query: 5 KIILVTGGTGLVGKAI----------EKI---VKEEEKRDDETWIFVSSKEADLSNLEST 51
K + + G +G G+ + K+ + + D+E + V+ + D L+
Sbjct: 19 KSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDY 78
Query: 52 QQLFSKYKPTHVIHLAAMVGGLFHNMSHNLDFFRVNMKINDNVLDTSYKQGVKK--VVSC 109
F + G + F RV+ + + G K ++S
Sbjct: 79 ASAFQGHD--VGFCC----LGTTRGKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSS 132
Query: 110 L 110
Sbjct: 133 K 133
>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia
pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*
Length = 357
Score = 44.1 bits (104), Expect = 4e-05
Identities = 37/216 (17%), Positives = 68/216 (31%), Gaps = 42/216 (19%)
Query: 5 KIILVTGGTGLVGK----------------AIEKIVKEEEKRDDETWIFVSSKEADLSNL 48
K + VTG TG G ++ + S+ D+ +
Sbjct: 10 KRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQ 69
Query: 49 ESTQQLFSKYKPTHVIHLAA--MVGGLFHNMSHNLDFFRVNMKINDNVLDT-SYKQGVKK 105
+ +++P V H+AA +V + + NV+ T + ++
Sbjct: 70 NKLLESIREFQPEIVFHMAAQPLVRLSYSEPVET---------YSTNVMGTVYLLEAIRH 120
Query: 106 VVSCLSTCIFPDKTTYPIDETMVHNGPPHPSNFG--YSHAKRMLDVL---------NKAY 154
V + Y E + YS++K +++ N A
Sbjct: 121 VGGVKAVVNITSDKCYDNKEWIWGYRENEAMGGYDPYSNSKGCAELVTSSYRNSFFNPAN 180
Query: 155 YQQHGVTYTSVIPCNVFGPHDNYNLESSHVIPGLIR 190
Y QHG +V NV G D ++P ++R
Sbjct: 181 YGQHGTAVATVRAGNVIGGGD---WALDRIVPDILR 213
>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A
{Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*
Length = 397
Score = 43.0 bits (102), Expect = 8e-05
Identities = 30/214 (14%), Positives = 64/214 (29%), Gaps = 75/214 (35%)
Query: 7 ILVTGGTGLVG--------------------------------------KAIEKIVKEEE 28
+LV GG G +G + +++ +
Sbjct: 5 VLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKP 64
Query: 29 KRDDETWIFVSSKEADLSNLESTQQLFSKYKPTH-VIHLAAM--VGGLFHNMSHNLDFFR 85
D D+ N + +F+++ P V+H+ A VG ++ L ++
Sbjct: 65 PWADRYAALE---VGDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVG---ESVRDPLKYYD 118
Query: 86 VNMKINDNVLDTSYKQGVKKVV-SCLSTCIFPDKTTY-------------PIDETMVHNG 131
N+ +L K++ S S+ + PID
Sbjct: 119 NNVVGILRLLQAMLLHKCDKIIFS--SSA-----AIFGNPTMGSVSTNAEPIDINA---- 167
Query: 132 PPHPSN-FGYSHAKRMLDVLNKAYYQQHGVTYTS 164
P + +G S K + + + + + +G+
Sbjct: 168 KKSPESPYGES--KLIAERMIRDCAEAYGIKGIC 199
>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain
dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A
{Salmonella typhi} SCOP: c.2.1.2
Length = 347
Score = 42.6 bits (101), Expect = 1e-04
Identities = 17/84 (20%), Positives = 26/84 (30%), Gaps = 23/84 (27%)
Query: 5 KIILVTGGTGLVGKA-IEKIVKEEEK-------------------RDDETWIFVSSKEAD 44
+L+TGG G +G + + + FV D
Sbjct: 2 AKLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFV---HGD 58
Query: 45 LSNLESTQQLFSKYKPTHVIHLAA 68
+ N +L +KY P HLA
Sbjct: 59 IRNKNDVTRLITKYMPDSCFHLAG 82
>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET:
TYD NAD; 1.80A {Salmonella enterica subsp} SCOP:
c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A*
Length = 361
Score = 42.1 bits (100), Expect = 1e-04
Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 24/83 (28%)
Query: 7 ILVTGGTGLVGKA-IEKIVKEEEKR--------------------DDETWIFVSSKEADL 45
IL+TGG G +G A + I+K + + + F AD+
Sbjct: 3 ILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFE---HADI 59
Query: 46 SNLESTQQLFSKYKPTHVIHLAA 68
+ ++F +Y+P V+HLAA
Sbjct: 60 CDSAEITRIFEQYQPDAVMHLAA 82
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent
epimerase/dehydratase, LMR162, NESG, structural
genomics, PSI-2; 2.73A {Listeria monocytogenes}
Length = 221
Score = 41.1 bits (96), Expect = 2e-04
Identities = 23/184 (12%), Positives = 49/184 (26%), Gaps = 38/184 (20%)
Query: 7 ILVTGGTGLVGKAIEK-----------IV----KEEEKRDDETWIFVSSKEADLSNLEST 51
I + G TG G I + IV K + D + + D+ +L
Sbjct: 3 IGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTHKDINIL-----QKDIFDL--- 54
Query: 52 QQLFSKYKPTHVIHLAAMVGGLFHNMSHNLDFFRVNMKINDNVLDTSYKQGVKKVVSCLS 111
+ + + + D ++ D+++ +++
Sbjct: 55 -----------TLSDLSDQNVVVDAYGISPDEAEKHVTSLDHLISVLNGTVSPRLLVVGG 103
Query: 112 TCIFPDKTTYPIDETMVHNGPPHPSNFGYSHAKRMLDVLNKAYYQQHGVTYTSVIPCNVF 171
D + Y A+ L Q ++T + P +F
Sbjct: 104 AASLQIDE----DGNTLLESKGLREAPYYPTARAQAKQLEHLKSHQAEFSWTYISPSAMF 159
Query: 172 GPHD 175
P +
Sbjct: 160 EPGE 163
>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA;
3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1
Length = 660
Score = 41.9 bits (99), Expect = 2e-04
Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 10/137 (7%)
Query: 63 VIHLAAMVGGLFHNMSHNLDFFRVNMKINDNVLDTSYKQGVKKVVSCLSTC-IFPDKTTY 121
V+ L A+ + + + L F ++ + N ++ K + + ST ++ +
Sbjct: 386 VLPLVAIATPIEYT-RNPLRVFELDFEENLRIIRYCVKYRKRIIFP--STSEVYGMCSDK 442
Query: 122 PIDETMVH--NGPPHPSNFGYSHAKRMLDVLNKAYYQQHGVTYTSVIPCNVFGPH-DNYN 178
DE + GP + + YS +K++LD + AY ++ G+ +T P N GP DN N
Sbjct: 443 YFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLN 502
Query: 179 ---LESSHVIPGLIRKL 192
+ SS I LI L
Sbjct: 503 AARIGSSRAITQLILNL 519
>3nzo_A UDP-N-acetylglucosamine 4,6-dehydratase; structural genomics,
PSI-2, protein structure initiative, MI center for
structural genomics, MCSG, NAD; HET: MSE NAD; 2.10A
{Vibrio fischeri} PDB: 3pvz_A*
Length = 399
Score = 41.2 bits (97), Expect = 3e-04
Identities = 29/147 (19%), Positives = 51/147 (34%), Gaps = 36/147 (24%)
Query: 3 EEKIILVTGGTGLVGKAI------------------E----KIVKEEEKRDDETWIFVSS 40
+ LV GG G +G+A+ E ++V++ +
Sbjct: 34 SQSRFLVLGGAGSIGQAVTKEIFKRNPQKLHVVDISENNMVELVRDIRSSFGYINGDFQT 93
Query: 41 KEADLSNLESTQQLFSKYKPTHVIHLAA-----MVGGLFHNMSHNLDFFRVNMKINDNVL 95
D+ ++E + + + +V++L+A F M VN+ D +
Sbjct: 94 FALDIGSIEYDAFIKADGQYDYVLNLSALKHVRSEKDPFTLMR----MIDVNVFNTDKTI 149
Query: 96 DTSYKQGVKKVVSCLSTCIFPDKTTYP 122
S G KK C+ST DK P
Sbjct: 150 QQSIDAGAKKYF-CVST----DKAANP 171
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural
genomics, PSI-2, protein structure initiative; HET: NDP;
1.78A {Lactobacillus casei atcc 334}
Length = 224
Score = 40.0 bits (93), Expect = 5e-04
Identities = 24/178 (13%), Positives = 47/178 (26%), Gaps = 27/178 (15%)
Query: 7 ILVTGGTGLVGKAIEK-----------IVKEEEKRDDETWIFVSSKEADLSNLESTQQLF 55
I V G TG G AI +V++ +K D V L T+
Sbjct: 3 IAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLGATV--ATLVKEPLVLTEADL 60
Query: 56 SKYKPTHVIHLAAMVGGLFHNMSHNLDFFRVNMKINDNVLDTSYKQGVKKVVSCLSTCIF 115
V+ ++ G +++ +++ V S +
Sbjct: 61 D--SVDAVVDALSVPWG--------SGRGYLHLDFATHLVSLLRNSDTLAVFILGSASLA 110
Query: 116 PDKTTYPIDETMVHNGPPHPSNFGYSHAKRMLDVLNKAYYQQHGVTYTSVIPCNVFGP 173
D M+ + P ++ + + V + + P F
Sbjct: 111 MP----GADHPMILDFPESAASQPWYDGALYQYYEYQFLQMNANVNWIGISPSEAFPS 164
>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for
structural genomics of infectio diseases, csgid, niaid;
HET: NAD SUC; 3.00A {Bacillus anthracis}
Length = 346
Score = 39.8 bits (94), Expect = 0.001
Identities = 15/90 (16%), Positives = 33/90 (36%), Gaps = 25/90 (27%)
Query: 1 MAEEKIILVTGGTGLVGKA-IEKIVKE---------------------EEKRDDETWIFV 38
+ ILVTGG G +G + +++ + +D + FV
Sbjct: 21 QSNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSGNLNNVKSIQDHPNYYFV 80
Query: 39 SSKEADLSNLESTQQLFSKYKPTHVIHLAA 68
+ ++ N E + + + +++ AA
Sbjct: 81 ---KGEIQNGELLEHVIKERDVQVIVNFAA 107
>1xq6_A Unknown protein; structural genomics, protein structure initiative,
CESG, AT5G02240, NADP, center for eukaryotic structural
genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP:
c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*
Length = 253
Score = 39.5 bits (92), Expect = 0.001
Identities = 31/225 (13%), Positives = 66/225 (29%), Gaps = 51/225 (22%)
Query: 5 KIILVTGGTGLVGKAIEK-------------IVKEEEKRDDETWIFVSSKEADLSNLEST 51
+LVTG +G G+ + K +V+ + ++ D+++ +S
Sbjct: 5 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGE-ADVFIGDITDADSI 63
Query: 52 QQLFSKYKPTHVIHLAAMVGG------------LFHNMSHNLDFFRVNMKINDNVLDTSY 99
F ++ L + V +V+ N +D +
Sbjct: 64 NPAFQGI--DALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAK 121
Query: 100 KQGVKKVVSCLSTCIFPDKTTYPIDETMVHNGPPHPSNFGYSHAKRMLDVLNKAYYQQHG 159
GVK +V + + +P+++ N KR + Y G
Sbjct: 122 VAGVKHIV--VVGSMGGTNPDHPLNKL---------GNGNILVWKRKAE----QYLADSG 166
Query: 160 VTYTSVIPCNVFGPHDNYNLESSHVIPGLIRKLYDTIEKGKDQSV 204
YT + + L+ D + + ++V
Sbjct: 167 TPYTIIRAGGLLDKEGGVR--------ELLVGKDDELLQTDTKTV 203
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics,
PSI-2, protein structure initiative; 1.40A {Lactococcus
lactis subsp}
Length = 219
Score = 39.2 bits (92), Expect = 0.001
Identities = 25/179 (13%), Positives = 57/179 (31%), Gaps = 39/179 (21%)
Query: 7 ILVTGGTGLVGKAIEKIVKEEEKRDDETWIFV--SSKEADLSNLESTQ-----------Q 53
I + G TG VGK+ ++K D + + + +N+++ +
Sbjct: 3 IFIVGSTGRVGKS---LLKSLSTTDYQIYAGARKVEQVPQYNNVKAVHFDVDWTPEEMAK 59
Query: 54 LFSKYKPTHVIHLAAMVGGLFHNMSHNLDFFRVNMKINDNVLDTSYKQGVKKVVSCLSTC 113
+I+++ S +V++ ++ + K VK+ +
Sbjct: 60 QLHGM--DAIINVSG---------SGGKSLLKVDLYGAVKLMQAAEKAEVKRFILL---- 104
Query: 114 IFPDKTTYPIDETMVHNGPPHPSNFGYSHAKRMLDVLNKAYYQQHGVTYTSVIPCNVFG 172
+T + G + Y AK D ++ + YT + P +
Sbjct: 105 -----STIFSLQPEKWIGAGFDALKDYYIAKHFAD---LYLTKETNLDYTIIQPGALTE 155
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation,
flavin reductase, diaphorase, green HAEM binding
protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2
PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Length = 206
Score = 37.7 bits (88), Expect = 0.003
Identities = 27/133 (20%), Positives = 41/133 (30%), Gaps = 22/133 (16%)
Query: 1 MAEEKIILVTGGTGLVGKAIEK-----------IVKEEEKRDDETWIFVSSKEADLSNLE 49
MA +KI + G TG G +V++ + E D+
Sbjct: 1 MAVKKI-AIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAA 59
Query: 50 STQQLFSKYKPTHVIHLAAMVGGLFHNMSHNLDFFRVNMKINDNVLDTSYKQGVKKVVSC 109
+ + VI L L V + N++ GV KVV+C
Sbjct: 60 DVDKTVA--GQDAVIVLLGTRND--------LSPTTVMSEGARNIVAAMKAHGVDKVVAC 109
Query: 110 LSTCIFPDKTTYP 122
S + D T P
Sbjct: 110 TSAFLLWDPTKVP 122
>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase
reductase, NADPH, dihydroquercetin, rossmann fold,
oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera}
PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*
Length = 337
Score = 37.2 bits (87), Expect = 0.006
Identities = 37/241 (15%), Positives = 81/241 (33%), Gaps = 80/241 (33%)
Query: 1 MAEE-KIILVTGGTGLVGKAI---------------------EKI--VKEEEKRDDETWI 36
M + + + VTG +G +G + +K+ + + K + +
Sbjct: 1 MGSQSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAETHLTL 60
Query: 37 FVSSKEADLSNLESTQQLFSKYKPTHVIHLAAMVG--GLFHNMSHNLDFFRVNMKIND-- 92
+ +ADL++ S F A+ G G+FH + ++ + D
Sbjct: 61 W----KADLADEGS----FD----------EAIKGCTGVFHVATP------MDFESKDPE 96
Query: 93 ------------NVLDTSYKQG-VKKVV--SCLSTCIFPDKTTYPIDET----MVHNGPP 133
++ + V+++V S T + DE+ M
Sbjct: 97 NEVIKPTIEGMLGIMKSCAAAKTVRRLVFTSSAGTVNIQEHQLPVYDESCWSDMEFCRAK 156
Query: 134 HPSNFGYSHAKRMLDVLNKA---YYQQHGVTYTSVIPCNVFGP--HDNYNLESSHVIPGL 188
+ + Y +K + + +A Y +++ + + ++IP V GP + S
Sbjct: 157 KMTAWMYFVSKTLAE---QAAWKYAKENNIDFITIIPTLVVGPFIMSSMP-PSLITALSP 212
Query: 189 I 189
I
Sbjct: 213 I 213
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics,
APC7755, NADP, P protein structure initiative; HET: MSE
NAP; 2.10A {Bacillus halodurans}
Length = 236
Score = 36.6 bits (85), Expect = 0.008
Identities = 28/180 (15%), Positives = 56/180 (31%), Gaps = 42/180 (23%)
Query: 7 ILVTGGTGLVGKAIEKIVKEEEKRDDETWIFV--SSKEADLSNL-----------ESTQQ 53
+LV G G V + ++ E + + E V + +L E
Sbjct: 24 VLVVGANGKVARY---LLSELKNKGHEPVAMVRNEEQGPELRERGASDIVVANLEEDFSH 80
Query: 54 LFSKYKPTHVIHLAAMVGGLFHNMSHNLDFFRVNMKINDNVLDTSYKQGVKKVVSCLSTC 113
F+ V+ A + +++ + + K+G+K+ + +S+
Sbjct: 81 AFASI--DAVVFAAGSGPHTGADK-----TILIDLWGAIKTIQEAEKRGIKRFI-MVSSV 132
Query: 114 IFPDKTTYPIDETMVHNGPPHPSNF-GYSHAKRMLDVLNKAYYQQHGVTYTSVIPCNVFG 172
+ P N Y AKR+ D ++ + YT V P +
Sbjct: 133 -------------GTVDPDQGPMNMRHYLVAKRLAD----DELKRSSLDYTIVRPGPLSN 175
>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant
protein; 1.40A {Medicago sativa}
Length = 322
Score = 36.8 bits (86), Expect = 0.008
Identities = 21/120 (17%), Positives = 43/120 (35%), Gaps = 16/120 (13%)
Query: 93 NVLDTSYKQG-VKKVV--SCLSTCIFPDKTTYPIDET----MVHNGPPHPSNFGYSHAKR 145
+L VK+ + S S F K +DE+ + P + Y+ +K
Sbjct: 106 GILKACVNSKTVKRFIYTSSGSAVSFNGKDKDVLDESDWSDVDLLRSVKPFGWNYAVSKT 165
Query: 146 MLDVLNKA---YYQQHGVTYTSVIPCNVFGP--HDNYNLESSHVIPGLIRKLYDTIEKGK 200
+ + KA + +Q+G+ ++I + G +S L+ + I +
Sbjct: 166 LAE---KAVLEFGEQNGIDVVTLILPFIVGRFVCPKLP-DSIEKALVLVLGKKEQIGVTR 221
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 35.3 bits (80), Expect = 0.012
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 8/32 (25%)
Query: 100 KQGVKKVVSCLSTCIF-PDKTTYP---IDETM 127
KQ +KK+ + L ++ D P I TM
Sbjct: 19 KQALKKLQASLK--LYADDSA--PALAIKATM 46
Score = 28.8 bits (63), Expect = 1.8
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 6/32 (18%)
Query: 41 KEADLSNLESTQQLFSKYKPTHVIHLA--AMV 70
K+A L L+++ +L Y LA A +
Sbjct: 19 KQA-LKKLQASLKL---YADDSAPALAIKATM 46
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm
2008} PDB: 3r14_A*
Length = 221
Score = 35.8 bits (82), Expect = 0.014
Identities = 13/172 (7%), Positives = 45/172 (26%), Gaps = 24/172 (13%)
Query: 7 ILVTGGTGLVGKAIEKIVKEEEKRDDETWIFV--SSKEADLSNLESTQQLFSKYKPTHVI 64
I + G G + + + + D ++ ++ + + +
Sbjct: 8 ITILGAAGQIAQXLTATLL--TYTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPG 65
Query: 65 HLAAMVGG---LFHNMSHNLDFFRVNMKINDNVLDTSYKQGVKKVVSCLSTCIFPDKTTY 121
L V +F + +++ + +++V+ + +
Sbjct: 66 XLEQAVTNAEVVFVGAMESGSDMA-------SIVKALSRXNIRRVIGVSMAGLSGEFPVA 118
Query: 122 PIDETMVHNGPPHPSNFGYSHAKRMLDVLNKAYYQQHGVTYTSVIPCNVFGP 173
T + Y +R ++ + YT + ++
Sbjct: 119 LEKWTFDNLPIS------YVQGERQAR----NVLRESNLNYTILRLTWLYND 160
>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C,
northeast structural genomics consortium, NESG, C
PSI-biology; 2.00A {Corynebacterium glutamicum}
Length = 516
Score = 35.4 bits (82), Expect = 0.025
Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 9/65 (13%)
Query: 7 ILVTGGTGLVGKAIEKIVKEEEKRDDETWIFV----SSKEADLSNLESTQQLFSKYKPTH 62
+ +TG GLVG+A + + + E V + L L
Sbjct: 150 VAITGSRGLVGRA---LTAQLQTGGHEVIQLVRKEPKPGKRFWDPLNPASDLLDGA--DV 204
Query: 63 VIHLA 67
++HLA
Sbjct: 205 LVHLA 209
>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif,
rossmann fold, short chain dehydrogenase/REDU family,
reductase; 2.30A {Mycobacterium tuberculosis}
Length = 478
Score = 34.9 bits (80), Expect = 0.035
Identities = 29/192 (15%), Positives = 55/192 (28%), Gaps = 58/192 (30%)
Query: 2 AEEKIILVTGGTGLVGK---------------------------AIEKIVKEEEKRDDET 34
E + +L+TG TG +G+ A ++ K + D E
Sbjct: 71 PELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDSGDPEL 130
Query: 35 WIFVSSK--------EADLS--NL----ESTQQLFSKYKPTHVIHLAAMVGGLFHNMSHN 80
D S +L ++L ++ AAMV +
Sbjct: 131 LRHFKELAADRLEVVAGDKSEPDLGLDQPMWRRLAETV--DLIVDSAAMV-------NAF 181
Query: 81 --LDFFRVNMKINDNVLDTSYKQGVKKV--VSCLSTCIFPDKTTYPIDETMVHNGPPHPS 136
+ F N+ ++ + +K VS + + + D + P
Sbjct: 182 PYHELFGPNVAGTAELIRIALTTKLKPFTYVSTADVGAAIEPSAFTEDADIRVISPTRTV 241
Query: 137 N----FGYSHAK 144
+ GY +K
Sbjct: 242 DGGWAGGYGTSK 253
>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain
dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis
vinifera} PDB: 3hfs_A
Length = 338
Score = 34.5 bits (80), Expect = 0.040
Identities = 21/93 (22%), Positives = 40/93 (43%), Gaps = 15/93 (16%)
Query: 93 NVLDTSYK-QGVKKVV---SCLSTCIFP-DKTTYPIDET----MVHNGPPHPSNFGYSHA 143
NV+ + + VK+V+ S + I D T +DE + P +GY +
Sbjct: 112 NVMKACTRAKSVKRVILTSSAAAVTINQLDGTGLVVDEKNWTDIEFLTSAKPPTWGYPAS 171
Query: 144 KRMLDVLNKA---YYQQHGVTYTSVIPCNVFGP 173
K + + KA + +++ + +VIP + G
Sbjct: 172 KTLAE---KAAWKFAEENNIDLITVIPTLMAGS 201
>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura
genomics, PSI, protein structure initiative; 1.50A
{Pseudomonas aeruginosa} SCOP: c.2.1.2
Length = 215
Score = 33.8 bits (78), Expect = 0.044
Identities = 16/109 (14%), Positives = 35/109 (32%), Gaps = 10/109 (9%)
Query: 5 KIILVTGGTGLVGKAIEKIVKEEEKRDDETWIFVSSKEADLSNLEST----QQLFSKYKP 60
K +L+ G TGL G+ + + E + A+ L++ +L +
Sbjct: 6 KRVLLAGATGLTGEHLLDRILSEPTL-AKVIAPARKALAEHPRLDNPVGPLAELLPQLDG 64
Query: 61 T--HVIHLAAMVGGLFHNMSHNLDFFRVNMKINDNVLDTSYKQGVKKVV 107
+ +G F V+ + V + + G + +
Sbjct: 65 SIDTAFCC---LGTTIKEAGSEEAFRAVDFDLPLAVGKRALEMGARHYL 110
>2wm3_A NMRA-like family domain containing protein 1; unknown function;
HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A*
3dxf_A 3e5m_A
Length = 299
Score = 34.3 bits (79), Expect = 0.047
Identities = 8/20 (40%), Positives = 15/20 (75%)
Query: 1 MAEEKIILVTGGTGLVGKAI 20
M ++K+++V GGTG G ++
Sbjct: 2 MVDKKLVVVFGGTGAQGGSV 21
>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein
structure initiative, midwest center for structural
genomics, MCSG; 2.06A {Listeria innocua}
Length = 202
Score = 33.4 bits (77), Expect = 0.068
Identities = 13/93 (13%), Positives = 37/93 (39%), Gaps = 13/93 (13%)
Query: 5 KIILVTGGTGLVGKAIEKIVKEEEKRDDETWIFVSSKE----ADLSNLESTQQLFSKYKP 60
IL+ G +G +G A+++ ++++ + I D++N++S ++++ +
Sbjct: 4 MKILLIGASGTLGSAVKERLEKKAEV-----ITAGRHSGDVTVDITNIDSIKKMYEQVGK 58
Query: 61 THVIHLAAMVG--GLFHNMSHNLDFFRVNMKIN 91
I A ++ + V +
Sbjct: 59 VDAIVSATGSATFSPLTELT--PEKNAVTISSK 89
>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase,
oxidoreductase, structural genomics; 2.10A
{Burkholderia pseudomallei 1710B}
Length = 269
Score = 33.7 bits (78), Expect = 0.070
Identities = 14/79 (17%), Positives = 26/79 (32%), Gaps = 26/79 (32%)
Query: 1 MAEEKIILVTGGTGLVGKAI----------------------EKIVKEEEKRDDETWIFV 38
M +++ VTGG G +G AI + E + +
Sbjct: 22 MQAKRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSERNDHVSTWLMHERDAGRDFKAYA 81
Query: 39 SSKEADLSNLESTQQLFSK 57
D+++ ES ++ K
Sbjct: 82 ----VDVADFESCERCAEK 96
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent
aromatic alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP:
c.2.1.2
Length = 308
Score = 33.3 bits (76), Expect = 0.085
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 1 MAEEKIILVTGGTGLVGKAI 20
M IL+ G TG +G+ +
Sbjct: 1 MGSRSRILLIGATGYIGRHV 20
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta
protein, NAD(P)-binding rossmann fold, csgid,
oxidoreductase; 1.95A {Francisella tularensis subsp}
Length = 247
Score = 32.5 bits (75), Expect = 0.15
Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 25/76 (32%)
Query: 3 EEKIILVTGGTGLVGKAI---------------------EKIVKEEEKRDDETWIFVSSK 41
EK+ LVTG + +G + EK +++ + V
Sbjct: 4 NEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKGFKARGLV--- 60
Query: 42 EADLSNLESTQQLFSK 57
++S++ES Q F++
Sbjct: 61 -LNISDIESIQNFFAE 75
>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain
dehydrogenase reductase, oxidoreductase; HET: NMN AMP;
1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB:
1ujm_A* 1zze_A
Length = 342
Score = 32.6 bits (75), Expect = 0.16
Identities = 32/241 (13%), Positives = 67/241 (27%), Gaps = 64/241 (26%)
Query: 1 MAEEKIILVTGGTGLVGKAI---------------------EKIVK--EEEKRDDETWIF 37
+ E ++LVTG G V + + K + +
Sbjct: 8 LPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAV 67
Query: 38 VSSKEADLSNLESTQQLFSKYKPTHVIHLAAMVGGLFHNMSHNLDFFRVNMKINDNVLDT 97
V D+ + ++ V H+A+ + + + + N L
Sbjct: 68 V----EDMLKQGAYDEVIKGA--AGVAHIAS----VVSFSNKYDEVVTPAIGGTLNALRA 117
Query: 98 SYKQG-VKKVV--SCLSTCIFPDKTT--YPIDETM---------VHNGPPHPSN--FGYS 141
+ VK+ V S + + P +DE P + Y+
Sbjct: 118 AAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKTLPESDPQKSLWVYA 177
Query: 142 HAKRMLDVL-NKA---YYQQHGVTY--TSVIPCNVFGP--HDNYNLESSHVIPGLIRKLY 193
+K A + ++ + +V+P G S+ G + L+
Sbjct: 178 ASK----TEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTS---GWMMSLF 230
Query: 194 D 194
+
Sbjct: 231 N 231
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
csgid, center for structural genomics O infectious
diseases; 1.90A {Staphylococcus aureus subsp} PDB:
3sj7_A*
Length = 246
Score = 32.5 bits (75), Expect = 0.16
Identities = 12/79 (15%), Positives = 31/79 (39%), Gaps = 26/79 (32%)
Query: 1 MAEEKIILVTGGTGLVGKAI----------------------EKIVKEEEKRDDETWIFV 38
M K LVTG + +G++I E +V+E + + +++
Sbjct: 1 MKMTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQ 60
Query: 39 SSKEADLSNLESTQQLFSK 57
A++++ + + + +
Sbjct: 61 ----ANVADADEVKAMIKE 75
>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase,
oxidoreductase, structural genomics; HET: P4C; 2.25A
{Burkholderia pseudomallei 1710B}
Length = 256
Score = 32.5 bits (75), Expect = 0.17
Identities = 14/79 (17%), Positives = 31/79 (39%), Gaps = 26/79 (32%)
Query: 1 MAEEKIILVTGGTGLVGKAI----------------------EKIVKEEEKRDDETWIFV 38
+ ++I VTGG G +G +I K +++++ + +
Sbjct: 10 VMSQRIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLEDQKALGFDFYASE 69
Query: 39 SSKEADLSNLESTQQLFSK 57
++ + +ST+Q F K
Sbjct: 70 ----GNVGDWDSTKQAFDK 84
>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl
carrier protein) reductase, short-chain
dehydrogenase/reductase (SDR); 2.4A {Bacillus
anthracis}
Length = 246
Score = 32.1 bits (74), Expect = 0.24
Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 26/79 (32%)
Query: 1 MAEEKIILVTGGTGLVGKAI----------------------EKIVKEEEKRDDETWIFV 38
M + K+ LVTG + +G+AI ++V E +K +
Sbjct: 1 MLKGKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKKLGSDAIAVR 60
Query: 39 SSKEADLSNLESTQQLFSK 57
AD++N E + +
Sbjct: 61 ----ADVANAEDVTNMVKQ 75
>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain
dehydrogenase/reductase, rossmann fold, oxidoreductase;
HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}
Length = 321
Score = 32.2 bits (74), Expect = 0.25
Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 15/76 (19%)
Query: 5 KIILVTGGTGLVGKA-----IEK------IVKEEEKRDDETWIFVSSKEADLSNLESTQQ 53
L+TG G VGK E+ + E + + D+ + + ++
Sbjct: 13 MRALITGVAGFVGKYLANHLTEQNVEVFGTSRNNEAKLPNVEMI----SLDIMDSQRVKK 68
Query: 54 LFSKYKPTHVIHLAAM 69
+ S KP ++ HLAA
Sbjct: 69 VISDIKPDYIFHLAAK 84
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic
alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.50A {Thuja plicata}
SCOP: c.2.1.2
Length = 313
Score = 31.4 bits (71), Expect = 0.34
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 1 MAEEKIILVTGGTGLVGKAI 20
M ++ +L+ GGTG +GK I
Sbjct: 1 MDKKSRVLIVGGTGYIGKRI 20
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, unknown function;
HET: MNB; 2.30A {Shigella flexneri 2A}
Length = 236
Score = 31.3 bits (71), Expect = 0.37
Identities = 21/169 (12%), Positives = 49/169 (28%), Gaps = 40/169 (23%)
Query: 7 ILVTGGTGLVGKAIEK------------IVKEEEKRDDETWIFVSSKEADLSNLESTQQL 54
+L+ G G + + + ++ K D+ N + +Q
Sbjct: 26 VLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTNSQIIMGDVLNHAALKQA 85
Query: 55 FSKYKPTHVIHLAAMVGGLFHNMSHNLDFFRVNMKINDNVLDTSYKQGVKKVVSCLSTCI 114
+ +++ L ++V+ VK+++ LS I
Sbjct: 86 M---QGQDIVYANLTGEDLDIQA--------------NSVIAAMKACDVKRLIFVLSLGI 128
Query: 115 FPDKTTYPIDETMVHNGPPHPSNFGYSHAKRMLDVLNKAYYQQHGVTYT 163
+ + ++ G P +R D + + G+ YT
Sbjct: 129 YDEVPGKFVEWNNAVIGEP------LKPFRRAADAI-----EASGLEYT 166
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase, FAT
biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia
prowazekii}
Length = 249
Score = 30.9 bits (71), Expect = 0.48
Identities = 18/74 (24%), Positives = 24/74 (32%), Gaps = 22/74 (29%)
Query: 3 EEKIILVTGGTGLVGKAI------------------EKIVKEEEKRDDETWIFVSSKEAD 44
K L+TG + +G AI EK+ D I V +
Sbjct: 13 TGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNALKDNYTIEV----CN 68
Query: 45 LSNLESTQQLFSKY 58
L+N E L SK
Sbjct: 69 LANKEECSNLISKT 82
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG,
short-chain alcohol reductase, fatty acid biosynthesis,
apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Length = 285
Score = 31.0 bits (71), Expect = 0.48
Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 25/76 (32%)
Query: 3 EEKIILVTGGTGLVGKAI---------------------EKIVKEEEKRDDETWIFVSSK 41
E K+ LVTG +G+ I + +V E + E+ +
Sbjct: 43 ENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYA--- 99
Query: 42 EADLSNLESTQQLFSK 57
D+S E ++ +K
Sbjct: 100 -GDVSKKEEISEVINK 114
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid,
3-ketoacyl-(acyl-carrier- protein) reductase,
oxidoreductase, structural genomics; 2.05A
{Burkholderia pseudomallei}
Length = 270
Score = 31.0 bits (71), Expect = 0.50
Identities = 11/76 (14%), Positives = 26/76 (34%), Gaps = 25/76 (32%)
Query: 3 EEKIILVTGGTGLVGKAI---------------------EKIVKEEEKRDDETWIFVSSK 41
++++ +VTG + +G+AI E I ++ E V
Sbjct: 27 DKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQAGLEGRGAV--- 83
Query: 42 EADLSNLESTQQLFSK 57
++++ + L
Sbjct: 84 -LNVNDATAVDALVES 98
>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold,
transcriptional regulation, short chain dehyd
reductase, NADP binding; 1.40A {Emericella nidulans}
SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A*
2vus_A 2vut_A* 2vuu_A*
Length = 352
Score = 30.9 bits (70), Expect = 0.52
Identities = 9/21 (42%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Query: 1 MA-EEKIILVTGGTGLVGKAI 20
MA ++K I V G TG G ++
Sbjct: 1 MAQQKKTIAVVGATGRQGASL 21
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics,
oxidoreductase, S structural genomics center for
infectious disease, ssgcid; 2.09A {Bartonella henselae}
PDB: 3enn_A 3emk_A
Length = 266
Score = 31.0 bits (71), Expect = 0.52
Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 22/73 (30%)
Query: 3 EEKIILVTGGTGLVGKAI------------------EKIVKEEEKRDDETWIFVSSKEAD 44
+ LVTG TG +G+AI +K+ + + ++F A+
Sbjct: 26 TGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADLGKDVFVFS----AN 81
Query: 45 LSNLESTQQLFSK 57
LS+ +S +QL
Sbjct: 82 LSDRKSIKQLAEV 94
>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics,
southeast collaboratory for structural genomics, secsg,
PSI; 1.90A {Clostridium thermocellum}
Length = 247
Score = 30.1 bits (69), Expect = 0.77
Identities = 12/77 (15%), Positives = 23/77 (29%), Gaps = 26/77 (33%)
Query: 3 EEKIILVTGGTGLVGKAI----------------------EKIVKEEEKRDDETWIFVSS 40
+ K +VTG + +GKAI + +E + +
Sbjct: 4 KGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEFKAAGINVVVAK-- 61
Query: 41 KEADLSNLESTQQLFSK 57
D+ N E + +
Sbjct: 62 --GDVKNPEDVENMVKT 76
>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX
NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB:
1ker_A* 1ket_A* 1kep_A*
Length = 348
Score = 30.6 bits (70), Expect = 0.83
Identities = 17/89 (19%), Positives = 31/89 (34%), Gaps = 26/89 (29%)
Query: 1 MAEEKIILVTGGTGLVGKA-IEKIVKEEEKR--------------------DDETWIFVS 39
M++ K I+VTGG G +G + + + V
Sbjct: 1 MSQFKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILGDRVELV- 59
Query: 40 SKEADLSNLESTQQLFSKYKPTHVIHLAA 68
D+++ E +L + K ++H AA
Sbjct: 60 --VGDIADAELVDKLAA--KADAIVHYAA 84
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold,
oxoacyl-ACP reductase, NADP binding, fatty AC
biosynthsis, oxidoreductase; HET: NAP; 2.38A
{Synechococcus elongatus} PDB: 4dml_A*
Length = 269
Score = 30.2 bits (69), Expect = 0.86
Identities = 15/77 (19%), Positives = 27/77 (35%), Gaps = 26/77 (33%)
Query: 3 EEKIILVTGGTGLVGKAI----------------------EKIVKEEEKRDDETWIFVSS 40
++I LVTG + +G+AI +++V E +
Sbjct: 27 TDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAAGGEAFAVK-- 84
Query: 41 KEADLSNLESTQQLFSK 57
AD+S + LF+
Sbjct: 85 --ADVSQESEVEALFAA 99
>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold,
structural genomics, NPPSFA; HET: NAD; 2.07A
{Pyrococcus horikoshii}
Length = 336
Score = 30.5 bits (70), Expect = 0.87
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 27/84 (32%)
Query: 7 ILVTGGTGLVGKA-IEKIVKE---------------------EEKRDDETWIFVSSKEAD 44
+LVTGG G +G I I+++ ++ DD + FV + D
Sbjct: 6 LLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANLKDLEDDPRYTFV---KGD 62
Query: 45 LSNLESTQQLFSKYKPTHVIHLAA 68
+++ E ++L K V+HLAA
Sbjct: 63 VADYELVKELVRK--VDGVVHLAA 84
>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain
oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE
MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*
Length = 248
Score = 29.8 bits (68), Expect = 1.1
Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 18/73 (24%)
Query: 3 EEKIILVTGGTGLVGKAI------------------EKIVKEEEKRDDETWIFVSSKEAD 44
+ K+ LVTG T +G+AI E+ E+ ++ + E +
Sbjct: 6 QGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKYGVKAHGVEMN 65
Query: 45 LSNLESTQQLFSK 57
L + ES + F +
Sbjct: 66 LLSEESINKAFEE 78
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short
chain dehydrogenase reductase, flavonoi oxidoreductase;
HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A*
3i6q_A*
Length = 346
Score = 30.0 bits (67), Expect = 1.3
Identities = 10/56 (17%), Positives = 20/56 (35%), Gaps = 3/56 (5%)
Query: 2 AEEKIILVTGGTGLVGKAIEKIVKEEEKRDDETWIFVSSKEADLSNLESTQQLFSK 57
+ + +L+ G TG +G+ + T+I S + + L K
Sbjct: 8 SPKGRVLIAGATGFIGQF---VATASLDAHRPTYILARPGPRSPSKAKIFKALEDK 60
>3dw0_A Class A carbapenemase KPC-2; beta-lactamase, antibiotic resistance,
hydrolase; 1.60A {Escherichia coli}
Length = 294
Score = 29.5 bits (66), Expect = 1.5
Identities = 10/39 (25%), Positives = 14/39 (35%), Gaps = 8/39 (20%)
Query: 274 EPIILSV--------DEKDEVTIAEVAEAIANAFQFKGR 304
PI+L+V D+ E IA A G+
Sbjct: 255 APIVLAVYTRAPNKDDKHSEAVIAAAARLALEGLGVNGQ 293
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold,
oxidoreductase; 1.70A {Clostridium thermocellum atcc
27405} PDB: 3dij_A* 3ged_A 3geg_A*
Length = 247
Score = 29.0 bits (66), Expect = 1.9
Identities = 12/70 (17%), Positives = 24/70 (34%), Gaps = 21/70 (30%)
Query: 5 KIILVTGGTGLVGKAI-----------------EKIVKEEEKRDDETWIFVSSKEADLSN 47
+ ++VTGG +GK I EK + K + F D+++
Sbjct: 3 RGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAKERPNLFYF----HGDVAD 58
Query: 48 LESTQQLFSK 57
+ ++
Sbjct: 59 PLTLKKFVEY 68
>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold,
rossmann fold, oxidoreductase; HET: NAP; 2.30A
{Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G
Length = 244
Score = 29.0 bits (66), Expect = 2.1
Identities = 13/75 (17%), Positives = 25/75 (33%), Gaps = 26/75 (34%)
Query: 5 KIILVTGGTGLVGKAI----------------------EKIVKEEEKRDDETWIFVSSKE 42
+++VTG + +GKAI E++ K+ E + F
Sbjct: 2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGGQAITFG---- 57
Query: 43 ADLSNLESTQQLFSK 57
D+S + +
Sbjct: 58 GDVSKEADVEAMMKT 72
>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW
YORK structural genomi research consortium, nysgrc;
2.45A {Sinorhizobium meliloti}
Length = 260
Score = 29.1 bits (66), Expect = 2.1
Identities = 9/66 (13%), Positives = 24/66 (36%), Gaps = 14/66 (21%)
Query: 3 EEKIILVTGGTGLVGKAI-EKIVKE----------EEKRDDETWIFVSSKEADLSNLEST 51
++K++++TG + +G + + D V D+S E+
Sbjct: 27 QQKVVVITGASQGIGAGLVRAYRDRNYRVVATSRSIKPSADPDIHTV---AGDISKPETA 83
Query: 52 QQLFSK 57
++ +
Sbjct: 84 DRIVRE 89
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann
fold, oxidoreductase (AC NADH), NADH binding,
oxidoreductase; HET: NAD; 2.16A {Dictyostelium
discoideum}
Length = 251
Score = 28.8 bits (65), Expect = 2.2
Identities = 18/104 (17%), Positives = 31/104 (29%), Gaps = 24/104 (23%)
Query: 5 KIILVTGGTGLVGKAIEKIVKEE----------EKRDDETWIFVSSKEADLSNLESTQQL 54
K ILV GG+G +G + K K + E + + S E + +
Sbjct: 23 KNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPNADHSF-----TIKDSGEEEIKSV 77
Query: 55 FSKYKPTH-----VIHLA--AMVGGLFHNMSHNLDFFRVNMKIN 91
K + A G + L + + +N
Sbjct: 78 IEKINSKSIKVDTFVCAAGGWSGGNASSDEF--LKSVKGMIDMN 119
>4e4y_A Short chain dehydrogenase family protein; structural genomics,
the center for structural genomics of I diseases,
csgid, niaid; 1.80A {Francisella tularensis subsp}
Length = 244
Score = 28.7 bits (65), Expect = 2.4
Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 14/64 (21%)
Query: 5 KIILVTGGTGLVGKAI-EKIVKE----------EEKRDDETWIFVSSKEADLSNLESTQQ 53
LVTGG+ +GKA+ E +++ ++ E F+ +ADL+ +
Sbjct: 5 ANYLVTGGSKGIGKAVVELLLQNKNHTVINIDIQQSFSAENLKFI---KADLTKQQDITN 61
Query: 54 LFSK 57
+
Sbjct: 62 VLDI 65
>1w7f_A Beta-lactamase; hydrolase, isocitrate, bacillus licheniformis
hydrolase; HET: ICT; 1.80A {Bacillus licheniformis}
Length = 307
Score = 28.8 bits (64), Expect = 2.4
Identities = 9/39 (23%), Positives = 18/39 (46%), Gaps = 8/39 (20%)
Query: 274 EPIILSV--------DEKDEVTIAEVAEAIANAFQFKGR 304
+P++L+V + D+ IAE + + A G+
Sbjct: 269 DPVVLAVLSSRDKKDAKYDDKLIAEATKVVVKALNMNGK 307
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 516
Score = 29.1 bits (65), Expect = 2.6
Identities = 16/83 (19%), Positives = 26/83 (31%), Gaps = 2/83 (2%)
Query: 227 PFSLFPFCFTGGDEFKVLGTGKPLRQFI--YSLDLARLFIWVLREYDSVEPIILSVDEKD 284
PF + G + L I Y D + + Y S P +L +
Sbjct: 282 PFDIAHKMLDGQIYSDIGSRNFTLNDKIALYFDDFDFTPLMIQENYLSTRPSVLKPGQSH 341
Query: 285 EVTIAEVAEAIANAFQFKGRITF 307
+AE A I+ + +I
Sbjct: 342 LEAVAEAANCISLGDIVEKKIRS 364
>2wk0_A Beta-lactamase; hydrolase, iodopenicillanate, antibiotic
resistance; HET: BIY CIT; 1.65A {Bacillus licheniformis}
PDB: 2x71_A* 3b3x_A* 1i2s_A* 1i2w_A* 2y91_A* 2blm_A
4blm_A 3sh9_A* 3sh7_A* 3sh8_A* 3ly3_A 3kgo_A* 3ly4_A*
3kgm_A* 3kgn_A* 3m2j_A* 3m2k_A* 3soi_A* 1mbl_A
Length = 265
Score = 28.7 bits (64), Expect = 2.6
Identities = 9/39 (23%), Positives = 18/39 (46%), Gaps = 8/39 (20%)
Query: 274 EPIILSV--------DEKDEVTIAEVAEAIANAFQFKGR 304
+P++L+V + D+ IAE + + A G+
Sbjct: 227 DPVVLAVLSSRDKKDAKYDDKLIAEATKVVVKALNMNGK 265
>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A
{Escherichia coli} PDB: 2zcv_A*
Length = 286
Score = 28.4 bits (64), Expect = 3.5
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 7 ILVTGGTGLVGKAI 20
I +TG TG +G +
Sbjct: 2 IAITGATGQLGHYV 15
>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics,
3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus
thuringiensis serovar kurstakorganism_taxid}
Length = 264
Score = 28.3 bits (64), Expect = 3.9
Identities = 10/77 (12%), Positives = 24/77 (31%), Gaps = 26/77 (33%)
Query: 3 EEKIILVTGGTGLVGKAI----------------------EKIVKEEEKRDDETWIFVSS 40
+ L+T GT +GK + E + + + ++
Sbjct: 6 FVRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAMETMKETYKDVEERLQFVQ-- 63
Query: 41 KEADLSNLESTQQLFSK 57
AD++ E ++ +
Sbjct: 64 --ADVTKKEDLHKIVEE 78
>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid
synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH
binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus
subtilis} PDB: 3oic_A*
Length = 258
Score = 27.9 bits (63), Expect = 4.3
Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 26/79 (32%)
Query: 1 MAEEKIILVTGGTGLVGKAI----------------------EKIVKEEEKRDDETWIFV 38
M + K LVTG + VGKA + +E EK + +
Sbjct: 1 MEQNKCALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEKLGVKVLVV- 59
Query: 39 SSKEADLSNLESTQQLFSK 57
+A++ +++F +
Sbjct: 60 ---KANVGQPAKIKEMFQQ 75
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET:
NDP; 2.40A {Streptomyces griseoruber}
Length = 279
Score = 28.0 bits (63), Expect = 4.3
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 1 MAEEKIILVTGGTGLVGKAI 20
M+ + VTG + +G A+
Sbjct: 21 MSRPQTAFVTGVSSGIGLAV 40
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta
protein., structural genomics, PSI-2, protein STR
initiative; 1.60A {Staphylococcus aureus subsp}
Length = 289
Score = 28.0 bits (63), Expect = 4.5
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 7 ILVTGGTGLVGKAI 20
I++TG TG +G I
Sbjct: 3 IMLTGATGHLGTHI 16
>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE
NAP; 1.60A {Vibrio cholerae o1 biovar el tor} PDB:
3rsh_A* 3rro_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A*
1i01_A* 1q7c_A* 2cf2_E
Length = 248
Score = 27.8 bits (63), Expect = 4.8
Identities = 14/73 (19%), Positives = 23/73 (31%), Gaps = 22/73 (30%)
Query: 3 EEKIILVTGGTGLVGKAI------------------EKIVKEEEKRDDETWIFVSSKEAD 44
E K+ LVTG + +GKAI + D +
Sbjct: 8 EGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLGDNGKGMA----LN 63
Query: 45 LSNLESTQQLFSK 57
++N ES + +
Sbjct: 64 VTNPESIEAVLKA 76
>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural
genomics, southea collaboratory for structural
genomics, secsg; 1.91A {Thermus thermophilus HB8}
Length = 245
Score = 27.8 bits (63), Expect = 4.8
Identities = 14/75 (18%), Positives = 27/75 (36%), Gaps = 25/75 (33%)
Query: 5 KIILVTGGTGLVGKAI----------------------EKIVKEEEKRDDETWIFVSSKE 42
+ L+TG + +G+AI E++ +E +R V+
Sbjct: 2 RKALITGASRGIGRAIALRLAEDGFALAIHYGQNREKAEEVAEEARRRGSPL---VAVLG 58
Query: 43 ADLSNLESTQQLFSK 57
A+L E+ L +
Sbjct: 59 ANLLEAEAATALVHQ 73
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease; 1.75A {Mycobacterium smegmatis}
Length = 262
Score = 27.9 bits (63), Expect = 5.0
Identities = 13/76 (17%), Positives = 27/76 (35%), Gaps = 24/76 (31%)
Query: 3 EEKIILVTGGTGLVGKAI---------------------EKIVKEEEKRDDETWIFVSSK 41
+ + ++VTGGT +G+ I + V + ++ I V
Sbjct: 9 QGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLGSGKVIGV--- 65
Query: 42 EADLSNLESTQQLFSK 57
+ D+S+ L +
Sbjct: 66 QTDVSDRAQCDALAGR 81
>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET:
NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A
2vrc_D
Length = 287
Score = 27.6 bits (62), Expect = 5.3
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 7 ILVTGGTGLVGKAI 20
I VTG TG +G +
Sbjct: 3 IAVTGATGQLGGLV 16
>3td9_A Branched chain amino acid ABC transporter, peripl amino
acid-binding protein; leucine binding, structural
genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Length = 366
Score = 28.0 bits (63), Expect = 5.4
Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 6/54 (11%)
Query: 270 YDSVEPIILSVDEKDEVTIAEVAEAIANAFQFK---GRITFDTNAADGQLKKTA 320
YD+ ++ +++ ++AE I F G I D +G K+
Sbjct: 294 YDAYMVLLDAIERAGSFDREKIAEEIRKTRNFNGASGIINID---ENGDAIKSV 344
>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas;
oxidoreductase; 1.99A {Streptomyces coelicolor}
Length = 253
Score = 27.5 bits (62), Expect = 5.8
Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 16/66 (24%)
Query: 3 EEKIILVTGGTGLVGKAI-EKIVKE----------EEKRDDETWIFVSSKEADLSNLEST 51
+ +LVTGG +G AI E + + + D+++ E
Sbjct: 20 MSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSGEPPEG-----FLAVKCDITDTEQV 74
Query: 52 QQLFSK 57
+Q + +
Sbjct: 75 EQAYKE 80
>3rih_A Short chain dehydrogenase or reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: PG5; 2.15A {Mycobacterium
abscessus}
Length = 293
Score = 27.6 bits (62), Expect = 5.9
Identities = 14/76 (18%), Positives = 22/76 (28%), Gaps = 24/76 (31%)
Query: 3 EEKIILVTGGTGLVGKAI---------------------EKIVKEEEKRDDETWIFVSSK 41
+ +LVTGGT +G+ I + E + I V
Sbjct: 40 SARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELGAGNVIGV--- 96
Query: 42 EADLSNLESTQQLFSK 57
D+S+ S
Sbjct: 97 RLDVSDPGSCADAART 112
>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain
dehydrogenase, ketone BODY, beta hydroxybutyrate,
oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi}
SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A*
2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*
Length = 260
Score = 27.6 bits (62), Expect = 6.0
Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 25/79 (31%)
Query: 1 MAEEKIILVTGGTGLVGKAI----------------------EKIVKEEEKRDDETWIFV 38
M + K+ +VTG T +G I EK+ + ++
Sbjct: 1 MLKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYD 60
Query: 39 SSKEADLSNLESTQQLFSK 57
ADLS E+ + L
Sbjct: 61 ---GADLSKGEAVRGLVDN 76
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase;
1.60A {Medicago sativa}
Length = 307
Score = 27.5 bits (61), Expect = 6.5
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 7 ILVTGGTGLVGKAI 20
IL+ G TG +G+ I
Sbjct: 5 ILILGPTGAIGRHI 18
>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural
protein; HET: GDP; 1.90A {Escherichia coli} SCOP:
c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A*
2zhc_A* 3iku_A 3iky_A
Length = 320
Score = 27.5 bits (60), Expect = 6.7
Identities = 7/44 (15%), Positives = 19/44 (43%), Gaps = 6/44 (13%)
Query: 4 EKIILVTGGTGLVGKAIEKIVKEEEKRDDETWIFVSSKEADLSN 47
++++ GG L+ A++K + ++R F + +
Sbjct: 274 THVMVIGGGAELICDAVKKHTQIRDER------FFKTNNSQYDL 311
>2bgs_A Aldose reductase; holoenzyme, aldo/keto reductase, oxidoreductase;
HET: NDP; 1.64A {Hordeum vulgare} PDB: 2bgq_A* 2vdg_A*
Length = 344
Score = 27.6 bits (62), Expect = 6.9
Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 3/26 (11%)
Query: 16 VGKAIEKIVKEEEKRDDETWIFVSSK 41
VGK ++ ++ R D +FV+SK
Sbjct: 90 VGKGLKAAMEAGIDRKD---LFVTSK 112
>3qhy_A Beta-lactamase; enyzme-inhibitor complex, beta-propeller,
protein:protein interaction; 2.06A {Bacillus anthracis}
Length = 271
Score = 27.2 bits (60), Expect = 7.3
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 8/35 (22%)
Query: 274 EPIILSV--------DEKDEVTIAEVAEAIANAFQ 300
PII+++ D IAE AE I NAF+
Sbjct: 237 APIIIAILSSKDEKGATYDNQLIAEAAEVIVNAFR 271
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase,
combinatorial biosynthesis, short chain
dehydrogenase/reductase; HET: NAP EMO; 2.10A
{Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A*
1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A*
1xr3_A*
Length = 277
Score = 27.2 bits (61), Expect = 7.9
Identities = 12/76 (15%), Positives = 23/76 (30%), Gaps = 25/76 (32%)
Query: 3 EEKIILVTGGTGLVGKAI---------------------EKIVKEEEKRDDETWIFVSSK 41
+ ++ LVTG T +G I +KE + E
Sbjct: 21 DSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRT--- 77
Query: 42 EADLSNLESTQQLFSK 57
D+ ++ + L +
Sbjct: 78 -CDVRSVPEIEALVAA 92
>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, center for structural genomics of infec
diseases, csgid; 2.80A {Bacillus anthracis}
Length = 267
Score = 27.1 bits (61), Expect = 8.1
Identities = 23/112 (20%), Positives = 37/112 (33%), Gaps = 31/112 (27%)
Query: 5 KIILVTGGTGLVGKAI---------------------EKIVKEEEKRDDETWIFVSSKEA 43
K LVTG T +GKAI + +KE + + + A
Sbjct: 11 KTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDA--ILQPVVA 68
Query: 44 DLSNLESTQQLFSKYKPTHVIHLAAMVG----GLFHNMSHN--LDFFRVNMK 89
DL + Q + KY + L +G + ++ F VN+
Sbjct: 69 DLGTEQGCQDVIEKYPKVDI--LINNLGIFEPVEYFDIPDEDWFKLFEVNIM 118
>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl
reductase, oxidoreductase; 1.49A {Mycobacterium
tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A
Length = 247
Score = 27.1 bits (61), Expect = 8.3
Identities = 13/61 (21%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
Query: 3 EEKIILVTGGTGLVGKAI-EKIVKEEEK-----RDDETWIFVSSKEADLSNLESTQQLFS 56
+ +LVTGG +G AI +++ + K R + E D+++ ++ + F+
Sbjct: 14 VSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGLFGVEVDVTDSDAVDRAFT 73
Query: 57 K 57
Sbjct: 74 A 74
>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain
dehydrogenase/reductase, steroid metabolism, LIP
metabolism, structural genomics; HET: NAD; 2.00A {Homo
sapiens}
Length = 264
Score = 27.1 bits (61), Expect = 9.0
Identities = 11/79 (13%), Positives = 24/79 (30%), Gaps = 24/79 (30%)
Query: 3 EEKIILVTGGTGLVGKAI---------------------EKIVKEEEKRDDETWIFVSSK 41
+ LVTG +G+A+ ++ V+ + +
Sbjct: 6 RSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGPGSKEGPPRGNH 65
Query: 42 EA---DLSNLESTQQLFSK 57
A D+S + + L +
Sbjct: 66 AAFQADVSEARAARCLLEQ 84
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, plant protein; HET: NDP; 1.50A
{Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A*
3c3x_A* 2qw8_A*
Length = 318
Score = 27.2 bits (60), Expect = 9.3
Identities = 9/23 (39%), Positives = 13/23 (56%), Gaps = 3/23 (13%)
Query: 1 MAEEKI---ILVTGGTGLVGKAI 20
M E + IL+ GGTG +G +
Sbjct: 5 MEENGMKSKILIFGGTGYIGNHM 27
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.406
Gapped
Lambda K H
0.267 0.0825 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,611,510
Number of extensions: 340973
Number of successful extensions: 1169
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1090
Number of HSP's successfully gapped: 157
Length of query: 358
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 263
Effective length of database: 4,049,298
Effective search space: 1064965374
Effective search space used: 1064965374
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (25.9 bits)