Query psy7597
Match_columns 188
No_of_seqs 154 out of 769
Neff 3.9
Searched_HMMs 46136
Date Fri Aug 16 22:26:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7597.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7597hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2099|consensus 100.0 8.6E-63 1.9E-67 466.0 6.6 173 1-180 100-291 (843)
2 PF00343 Phosphorylase: Carboh 100.0 1.8E-58 3.9E-63 443.8 7.7 161 13-180 1-181 (713)
3 TIGR02093 P_ylase glycogen/sta 100.0 7.1E-55 1.5E-59 422.7 12.8 173 1-180 69-264 (794)
4 PRK14985 maltodextrin phosphor 100.0 9E-55 1.9E-59 422.0 11.9 173 1-180 78-269 (798)
5 cd04300 GT1_Glycogen_Phosphory 100.0 2.3E-54 5E-59 419.5 12.5 173 1-180 72-267 (797)
6 PRK14986 glycogen phosphorylas 100.0 4.7E-54 1E-58 417.9 12.8 172 1-179 89-279 (815)
7 COG0058 GlgP Glucan phosphoryl 100.0 3E-41 6.5E-46 326.1 7.2 150 2-174 82-233 (750)
8 TIGR02094 more_P_ylases alpha- 99.9 7E-28 1.5E-32 228.6 7.2 124 28-174 11-137 (601)
9 cd04299 GT1_Glycogen_Phosphory 99.9 5.1E-26 1.1E-30 221.7 7.6 125 28-175 98-225 (778)
10 PF00814 Peptidase_M22: Glycop 35.9 14 0.00031 32.1 0.4 53 6-60 33-88 (268)
11 PF11212 DUF2999: Protein of u 34.8 40 0.00086 25.5 2.6 22 7-28 57-78 (82)
12 PF13443 HTH_26: Cro/C1-type H 32.5 19 0.00041 23.8 0.5 23 8-30 41-63 (63)
13 PF07499 RuvA_C: RuvA, C-termi 29.8 57 0.0012 21.3 2.5 23 6-28 2-24 (47)
14 KOG4545|consensus 28.7 28 0.00061 30.1 1.1 21 28-48 56-76 (197)
15 PF05706 CDKN3: Cyclin-depende 27.4 40 0.00086 28.5 1.7 18 35-52 141-161 (168)
16 cd03791 GT1_Glycogen_synthase_ 26.9 67 0.0014 28.9 3.2 40 27-66 7-46 (476)
17 PF09278 MerR-DNA-bind: MerR, 26.9 47 0.001 22.2 1.7 17 12-28 8-24 (65)
18 PF04221 RelB: RelB antitoxin; 25.5 65 0.0014 23.3 2.4 22 5-26 11-32 (83)
19 PF11181 YflT: Heat induced st 23.6 77 0.0017 23.6 2.5 29 6-34 69-97 (103)
20 KOG2112|consensus 22.5 1.3E+02 0.0028 26.3 4.0 83 20-110 77-166 (206)
21 PRK11235 bifunctional antitoxi 21.2 95 0.0021 23.1 2.5 22 5-26 11-32 (80)
22 COG3077 RelB DNA-damage-induci 20.5 1E+02 0.0023 23.6 2.7 22 6-27 15-36 (88)
No 1
>KOG2099|consensus
Probab=100.00 E-value=8.6e-63 Score=466.03 Aligned_cols=173 Identities=33% Similarity=0.476 Sum_probs=162.1
Q ss_pred CCCCChhHHHHHHHHHcCCCHHHHHhhhhccCCCCCCchhhHHHHHHHhhccCCCceEEEeccCCceeEEEecCCccccc
Q psy7597 1 MTTLKRPHSRSASHQKLGLDIEELEAIEEDAGLGNGGLGRLAACFLDSMATLGLSAYGYECFMMVLIYTGRIKETLQPQE 80 (188)
Q Consensus 1 ~~~l~~~~~~~~~l~~lG~~l~~i~~~E~d~~LgnGGLGrLAa~~ldS~A~l~lp~~GygirY~~G~FkQ~i~dG~QvE~ 80 (188)
|.+|++...|.+||.+||+|+|+|.++|+||||||||||||||||||||||||+|++||||||+||+|+|+|.+|+|+|.
T Consensus 100 m~Nlglq~~~deAl~qlG~dlEel~e~E~DagLGNGGLGRLAaCFlDSMATlglpA~GYGlRYeyGiF~QkI~~g~Q~E~ 179 (843)
T KOG2099|consen 100 MINLGLQNACDEALYQLGLDLEELEEQEEDAGLGNGGLGRLAACFLDSMATLGLPAYGYGLRYEYGIFKQKITDGWQVEE 179 (843)
T ss_pred HHhccCcchhHHHHHHhCcCHHHHHhcCcCcCcCCcchHHHHHHHHHHHhhcCCccccccceeehhhHHHHhcCCccccc
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccCCCcceEeeCceeEEEecccceeee------e---------eeeeecccccccccccccccCCccceeccCCCC
Q psy7597 81 ATLHQKVTVLFEIAGGRKTETVPALSGQRQK------H---------ETLAPFTGLAFYKANNFVSSKAPGIWQSSKTAP 145 (188)
Q Consensus 81 pd~Wl~~g~pWe~~r~~~~~~v~i~~g~v~~------~---------e~~~PIpG~~t~n~nN~v~~~tlRLW~a~~~~~ 145 (188)
||+||+.|||||+.|++....|.+ ||+|+. | .+++|||||.+. ++||||||+|+++++
T Consensus 180 ~ddWL~~gnPWE~~R~e~~lPV~F-yGkV~~~~~g~kWid~q~V~A~~YD~PvPGyk~n------~vntlRLWsaka~~d 252 (843)
T KOG2099|consen 180 PDDWLRYGNPWEKARPEVMLPVHF-YGKVEHTPDGSKWIDTQVVLAMPYDTPVPGYKNN------TVNTLRLWSAKAPND 252 (843)
T ss_pred hHHHHHcCCchhhcCcceEeEEEE-EEEEEeCCCcceeecceeEEEeccCCCCCCcccC------cceeeeeeccCCCCC
Confidence 999999999999999976666666 998886 2 334999999987 447899999999999
Q ss_pred CCchh----hHHHHhhchhhcccccceeccCcccccccc
Q psy7597 146 QNLLK----TYLKFESNTEHCMALGRVIGTSAALFKSRQ 180 (188)
Q Consensus 146 fnl~~----dy~~a~~~~~~ae~IsrVly~~~~~~~~~~ 180 (188)
|||.+ ||..||.+++.||+|+||||||||+|+|..
T Consensus 253 f~l~~fN~Gdy~~av~~~~~AenI~~VLYPnDnf~eGKe 291 (843)
T KOG2099|consen 253 FDLKDFNVGDYIQAVLDRNLAENISRVLYPNDNFFEGKE 291 (843)
T ss_pred CCHHhccCchHHHHHHHHHhhhhceEEecCCCccccchh
Confidence 99998 999999999999999999999999999864
No 2
>PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 35 GT35 from CAZY comprises enzymes with only one known activity; glycogen and starch phosphorylase (2.4.1.1 from EC). The main role of glycogen phosphorylase (GPase) is to provide phosphorylated glucose molecules (G-1-P) []. GPase is a highly regulated allosteric enzyme. The net effect of the regulatory site allows the enzyme to operate at a variety of rates; the enzyme is not simply regulated as "on" or "off", but rather it can be thought of being set to operate at an ideal rate based on changing conditions at in the cell. The most important allosteric effector is the phosphate molecule covalently attached to Ser14. This switches GPase from the b (inactive) state to the a (active) state. Upon phosphorylation, GPase attains about 80% of its Vmax. When the enzyme is not phosphorylated, GPase activity is practically non-existent at low AMP levels. There is some apparent controversy as to the structure of GPase. All sources agree that the enzyme is multimeric, but there is apparent controversy as to the enzyme being a tetramer or a dimer. Apparently, GPase (in the a form) forms tetramers in the crystal form. The consensus seems to be that `regardless of the a or b form, GPase functions as a dimer in vivo []. The GPase monomer is best described as consisting of two domains, an N-terminal domain and a C-terminal domain []. The C-terminal domain is often referred to as the catalytic domain. It consists of a beta-sheet core surrounded by layers of helical segments []. The vitamin cofactor pyridoxal phosphate (PLP) is covalently attached to the amino acid backbone. The N-terminal domain also consists of a central beta-sheet core and is surrounded by layers of helical segments. The N-terminal domain contains different allosteric effector sites to regulate the enzyme. Bacterial phosphorylases follow the same catalytic mechanisms as their plant and animal counterparts, but differ considerably in terms of their substrate specificity and regulation. The catalytic domains are highly conserved while the regulatory sites are only poorly conserved. For maltodextrin phosphorylase from Escherichia coli the physiological role of the enzyme in the utilisation of maltidextrins is known in detail; that of all the other bacterial phosphorylases is still unclear. Roles in regulatuon of endogenous glycogen metabolism in periods of starvation, and sporulation, stress response or quick adaptation to changing environments are possible [].; GO: 0004645 phosphorylase activity, 0005975 carbohydrate metabolic process; PDB: 1YGP_B 2AW3_B 2AV6_B 1AHP_B 1QM5_A 1L5W_A 2ECP_A 2ASV_A 1L5V_B 1E4O_B ....
Probab=100.00 E-value=1.8e-58 Score=443.83 Aligned_cols=161 Identities=30% Similarity=0.470 Sum_probs=141.7
Q ss_pred HHHHcCCCHHHHHhhhhccCCCCCCchhhHHHHHHHhhccCCCceEEEeccCCceeEEEecCCccccccCCcccCCCcce
Q psy7597 13 SHQKLGLDIEELEAIEEDAGLGNGGLGRLAACFLDSMATLGLSAYGYECFMMVLIYTGRIKETLQPQEATLHQKVTVLFE 92 (188)
Q Consensus 13 ~l~~lG~~l~~i~~~E~d~~LgnGGLGrLAa~~ldS~A~l~lp~~GygirY~~G~FkQ~i~dG~QvE~pd~Wl~~g~pWe 92 (188)
||+++|+++++|+++|+||||||||||||||||||||||+++|++||||||+||+|||+|+||+|+|.||+|+..|||||
T Consensus 1 Al~~lg~~~~~l~~~E~da~LGNGGLGRLAacfldSlAtl~~p~~GygirY~yG~F~Q~i~dG~QvE~pd~Wl~~g~pWe 80 (713)
T PF00343_consen 1 ALKELGFDLEELEEQEPDAGLGNGGLGRLAACFLDSLATLGIPAYGYGIRYEYGLFKQKIVDGWQVELPDNWLRYGNPWE 80 (713)
T ss_dssp HHHHTT--HHHHHTTS--EEESSSHHHHHHHHHHHHHHHTT-EEEEEEE--SCESEEEEEETTEEEEEEEBTTTTG-TTS
T ss_pred ChhHhCCCHHHHHhhCcCccccCcccchhHHHHHHHHHhCCCCceEEEeeecCCCceeEeecCCcccCCCCccCCCCceE
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCceeEEEecccceee----------------eeeeeeecccccccccccccccCCccceeccCCCCCCchh----hH
Q psy7597 93 IAGGRKTETVPALSGQRQ----------------KHETLAPFTGLAFYKANNFVSSKAPGIWQSSKTAPQNLLK----TY 152 (188)
Q Consensus 93 ~~r~~~~~~v~i~~g~v~----------------~~e~~~PIpG~~t~n~nN~v~~~tlRLW~a~~~~~fnl~~----dy 152 (188)
++|++.++.|++ +|+++ +..+++|||||.+. ++||||||+|+++.+||+.. ||
T Consensus 81 ~~r~~~~~~V~f-~G~v~~~~~~~~~~~~~~~v~av~yD~pi~Gy~~~------~vn~LRLw~a~~~~~fd~~~fn~gdy 153 (713)
T PF00343_consen 81 IRRPDESYEVKF-GGRVEDDGGRKVRWEDGETVLAVPYDMPIPGYRTK------TVNTLRLWSAEPSEEFDLESFNRGDY 153 (713)
T ss_dssp EEEGGGEEEEEE-SEEEE-EETTEEEEESCEEEEEEEEEEEEE-SSSS-------EEEEEEEEEEESSSTTHHHHHTTCH
T ss_pred EecCCceEEEec-cceEEecCCCcccccCCeEEEEEecCceeecCCCC------ceEEEEEeccCCCcccChhhcCCCcH
Confidence 999999999999 66665 22567999999988 56889999999999999998 99
Q ss_pred HHHhhchhhcccccceeccCcccccccc
Q psy7597 153 LKFESNTEHCMALGRVIGTSAALFKSRQ 180 (188)
Q Consensus 153 ~~a~~~~~~ae~IsrVly~~~~~~~~~~ 180 (188)
.+||++++.+|+||+||||||+-.+|+.
T Consensus 154 ~~a~~~~~~~e~is~vLYP~d~~~~Gk~ 181 (713)
T PF00343_consen 154 IKAVEEKNRAENISKVLYPNDSTEEGKE 181 (713)
T ss_dssp HHHHHHHHHHHGGGTBSS-SSSSHHHHH
T ss_pred HHHHHHHHHhhceeeecCCCCccccchh
Confidence 9999999999999999999999988864
No 3
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources.
Probab=100.00 E-value=7.1e-55 Score=422.67 Aligned_cols=173 Identities=28% Similarity=0.423 Sum_probs=160.8
Q ss_pred CCCCChhHHHHHHHHHcCCCHHHHHhhhhccCCCCCCchhhHHHHHHHhhccCCCceEEEeccCCceeEEEecCCccccc
Q psy7597 1 MTTLKRPHSRSASHQKLGLDIEELEAIEEDAGLGNGGLGRLAACFLDSMATLGLSAYGYECFMMVLIYTGRIKETLQPQE 80 (188)
Q Consensus 1 ~~~l~~~~~~~~~l~~lG~~l~~i~~~E~d~~LgnGGLGrLAa~~ldS~A~l~lp~~GygirY~~G~FkQ~i~dG~QvE~ 80 (188)
+.+|++.++++++|+++|+|+++|+++|+|||||||||||||||||||||||++|++||||||+||||+|+|.||+|+|.
T Consensus 69 l~nlgl~~~~~~~l~~lg~~l~~i~~~E~Da~LGnGGLGrLAacfldS~Atl~~P~~GyGirY~yG~F~Q~I~dG~Q~E~ 148 (794)
T TIGR02093 69 LLNLGLYDEVKEALRELGLDLEEILEIENDAGLGNGGLGRLAACFLDSLATLGLPATGYGIRYEYGLFKQKIVDGWQVEL 148 (794)
T ss_pred HHhCCCHHHHHHHHHHhCCCHHHHHhcCCCCCCCCCchHHHHHHHHHHHHhCCCCeEEEEeeecCCceEEEEECCEEEEc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccCCCcceEeeCceeEEEecccceeee-------------------eeeeeecccccccccccccccCCccceecc
Q psy7597 81 ATLHQKVTVLFEIAGGRKTETVPALSGQRQK-------------------HETLAPFTGLAFYKANNFVSSKAPGIWQSS 141 (188)
Q Consensus 81 pd~Wl~~g~pWe~~r~~~~~~v~i~~g~v~~-------------------~e~~~PIpG~~t~n~nN~v~~~tlRLW~a~ 141 (188)
||+|+..++|||++|++.++.|++ +|+++. +.+.+|||||.+. .+||||||+|+
T Consensus 149 pd~Wl~~~~pwe~~r~~~~~~V~f-~G~v~~~~~~g~~~~~w~~~~~v~avpyD~pi~Gy~~~------~vn~LRLW~a~ 221 (794)
T TIGR02093 149 PDDWLRYGNPWEIRRPDRSYEVRF-GGRVELQPDSDRLRPRWVPAETVLAIPYDVPVPGYRTD------TVNTLRLWSAE 221 (794)
T ss_pred CCCcCCCCCCceeecCCcEEEEEe-CCEEeeeccCCcceeEeeCceEEEEeecceeecCCCCC------ceEEEEEEEec
Confidence 999999999999999999999999 664522 1346999999987 45789999999
Q ss_pred CCCCCCchh----hHHHHhhchhhcccccceeccCcccccccc
Q psy7597 142 KTAPQNLLK----TYLKFESNTEHCMALGRVIGTSAALFKSRQ 180 (188)
Q Consensus 142 ~~~~fnl~~----dy~~a~~~~~~ae~IsrVly~~~~~~~~~~ 180 (188)
++..|||.. ||.+|+++++.+++||+||||+|+-.+|+.
T Consensus 222 ~~~~f~l~~fn~gdy~~a~~~~~~~e~It~vLYp~D~~~~Gk~ 264 (794)
T TIGR02093 222 APEEFDLDAFNAGDYYEAVEEKNRAENISRVLYPNDSTYEGKE 264 (794)
T ss_pred CccccCHhhccCccHhhhhhChhhcCccccCCcCCCCccchHH
Confidence 999999888 999999999999999999999998877763
No 4
>PRK14985 maltodextrin phosphorylase; Provisional
Probab=100.00 E-value=9e-55 Score=421.97 Aligned_cols=173 Identities=24% Similarity=0.327 Sum_probs=161.3
Q ss_pred CCCCChhHHHHHHHHHcCCCHHHHHhhhhccCCCCCCchhhHHHHHHHhhccCCCceEEEeccCCceeEEEecCCccccc
Q psy7597 1 MTTLKRPHSRSASHQKLGLDIEELEAIEEDAGLGNGGLGRLAACFLDSMATLGLSAYGYECFMMVLIYTGRIKETLQPQE 80 (188)
Q Consensus 1 ~~~l~~~~~~~~~l~~lG~~l~~i~~~E~d~~LgnGGLGrLAa~~ldS~A~l~lp~~GygirY~~G~FkQ~i~dG~QvE~ 80 (188)
+.+|++.++++++|+++|+|+++|+++|+|||||||||||||||||||||||++|++||||||+||||+|+|.||+|+|.
T Consensus 78 l~nlgl~~~~~~al~~lg~~l~~i~~~E~Da~LGnGGLGrLAacfldS~AtL~lP~~GyGirY~yG~F~Q~I~dG~Q~E~ 157 (798)
T PRK14985 78 LLNLGWYDDVQDVLKAYDINLTDLLEEETDPALGNGGLGRLAACFLDSMATVGQPATGYGLNYQYGLFRQSFVDGKQVEA 157 (798)
T ss_pred HHhcCCHHHHHHHHHHcCCCHHHHhccCCCCCCCCcchHHHHHHHHHHHHhCCCCeEEEEeccCCCCeEEEEECCeEEEC
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccCCCcceEeeCceeEEEecccceeee------e---------eeeeecccccccccccccccCCccceeccCCCC
Q psy7597 81 ATLHQKVTVLFEIAGGRKTETVPALSGQRQK------H---------ETLAPFTGLAFYKANNFVSSKAPGIWQSSKTAP 145 (188)
Q Consensus 81 pd~Wl~~g~pWe~~r~~~~~~v~i~~g~v~~------~---------e~~~PIpG~~t~n~nN~v~~~tlRLW~a~~~~~ 145 (188)
||.|+..++|||++|++.++.|++ +|++.. | .+.+|||||.+. +++|||||+|+++.+
T Consensus 158 pd~Wl~~~~pwe~~r~~~~~~V~f-~G~v~~~~G~~~w~~~~~v~avpyDvpi~Gy~~~------~~n~LRLW~a~~~~~ 230 (798)
T PRK14985 158 PDDWHRDSYPWFRHNEALDVQVGI-GGKVTKQDGRERWEPAFTITGEAWDLPVVGYRNG------VAQPLRLWQATHAHP 230 (798)
T ss_pred CCCcccCCCCceecCCCceEEEee-CCEEEeeCCcEEEECCEEEEEEeccccccCCCCC------ceEEEEEeEcCCCCc
Confidence 999999999999999999999999 665532 1 346999999988 558899999999999
Q ss_pred CCchh----hHHHHhhchhhcccccceeccCcccccccc
Q psy7597 146 QNLLK----TYLKFESNTEHCMALGRVIGTSAALFKSRQ 180 (188)
Q Consensus 146 fnl~~----dy~~a~~~~~~ae~IsrVly~~~~~~~~~~ 180 (188)
|||.+ ||.+|+++++.+++||+||||+|+-.+|+.
T Consensus 231 ~~l~~fn~gdy~~a~en~~~~e~It~~LYp~D~~~~Gk~ 269 (798)
T PRK14985 231 FDLTKFNDGDFLRAEQQGIDAEKLTKVLYPNDNHTAGKK 269 (798)
T ss_pred cCHHHcCCcchhhccccchhhcchhceecCCCCCcchHH
Confidence 99998 999999999999999999999999777763
No 5
>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=100.00 E-value=2.3e-54 Score=419.51 Aligned_cols=173 Identities=27% Similarity=0.426 Sum_probs=159.9
Q ss_pred CCCCChhHHHHHHHHHcCCCHHHHHhhhhccCCCCCCchhhHHHHHHHhhccCCCceEEEeccCCceeEEEecCCccccc
Q psy7597 1 MTTLKRPHSRSASHQKLGLDIEELEAIEEDAGLGNGGLGRLAACFLDSMATLGLSAYGYECFMMVLIYTGRIKETLQPQE 80 (188)
Q Consensus 1 ~~~l~~~~~~~~~l~~lG~~l~~i~~~E~d~~LgnGGLGrLAa~~ldS~A~l~lp~~GygirY~~G~FkQ~i~dG~QvE~ 80 (188)
|.+|++.++++++|+++|+++++|+++|+||||||||||||||||||||||||+|++||||||+||||+|+|.+|+|+|.
T Consensus 72 l~nLgl~~~~~~~L~~lg~~l~~i~~~E~Da~LGnGGLGrLAacfldS~AtLglP~~G~GirY~yG~F~Q~i~~G~Q~E~ 151 (797)
T cd04300 72 LLNLGLYDEVREALAELGVDLEDLEEQEPDAGLGNGGLGRLAACFLDSLATLGLPGYGYGIRYEYGLFKQKIVDGYQVEL 151 (797)
T ss_pred HHhCCcHHHHHHHHHHhCCCHHHHHhcCCCCCCCCCCcchhHHHHHHHHHhCCCCeEEEEecccCCCeEEEEECCEEEec
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccCCCcceEeeCceeEEEecccceeeee-------------------eeeeecccccccccccccccCCccceecc
Q psy7597 81 ATLHQKVTVLFEIAGGRKTETVPALSGQRQKH-------------------ETLAPFTGLAFYKANNFVSSKAPGIWQSS 141 (188)
Q Consensus 81 pd~Wl~~g~pWe~~r~~~~~~v~i~~g~v~~~-------------------e~~~PIpG~~t~n~nN~v~~~tlRLW~a~ 141 (188)
||+|+..++|||++|++.+++|++ +|++..+ .+++|||||.+. .++|||||+|+
T Consensus 152 pd~Wl~~~~pwe~~r~~~~~~V~f-~G~~~~~~~~G~~~~~w~~~~~v~avpyDvpi~Gy~~~------~~n~LRLW~a~ 224 (797)
T cd04300 152 PDNWLRYGNPWEIRRPDVAVPVRF-GGRVEHYEDGGRLRVRWVDGETVLAVPYDTPIPGYGTN------TVNTLRLWSAE 224 (797)
T ss_pred CCCccCCCCCceEecCCcEEEEEE-CCEEEEeecCCcceeeecCcceEEeeecceeecCCCCC------ceEEEEEEEee
Confidence 999999999999999999999999 5545321 345999999987 45789999999
Q ss_pred CCCCCCchh----hHHHHhhchhhcccccceeccCcccccccc
Q psy7597 142 KTAPQNLLK----TYLKFESNTEHCMALGRVIGTSAALFKSRQ 180 (188)
Q Consensus 142 ~~~~fnl~~----dy~~a~~~~~~ae~IsrVly~~~~~~~~~~ 180 (188)
++..||+.. ||.+|+++.+.+++||+||||+|+-.+|+.
T Consensus 225 ~~~~~dl~~fn~gdy~~a~~~~~~~~~It~~LYp~Ds~~~Gk~ 267 (797)
T cd04300 225 ASEEFDLDAFNRGDYIRAVEEKNRAENISKVLYPNDSTEEGKE 267 (797)
T ss_pred CCCCcCHHHhcCCchhhHHhhHHHhhhhhcccCCCCCchhHHH
Confidence 999998765 999999999999999999999998877753
No 6
>PRK14986 glycogen phosphorylase; Provisional
Probab=100.00 E-value=4.7e-54 Score=417.86 Aligned_cols=172 Identities=28% Similarity=0.415 Sum_probs=160.2
Q ss_pred CCCCChhHHHHHHHHHcCCCHHHHHhhhhccCCCCCCchhhHHHHHHHhhccCCCceEEEeccCCceeEEEecCCccccc
Q psy7597 1 MTTLKRPHSRSASHQKLGLDIEELEAIEEDAGLGNGGLGRLAACFLDSMATLGLSAYGYECFMMVLIYTGRIKETLQPQE 80 (188)
Q Consensus 1 ~~~l~~~~~~~~~l~~lG~~l~~i~~~E~d~~LgnGGLGrLAa~~ldS~A~l~lp~~GygirY~~G~FkQ~i~dG~QvE~ 80 (188)
+.+|++.++++++|+++|+|+++|+++|+||||||||||||||||||||||||+|++||||||+||||+|+|.||+|+|.
T Consensus 89 l~nlg~~~~~~~al~~lg~~l~~l~~~E~Da~LGnGGLGrLAac~ldS~A~LglP~~G~Gi~Y~yG~F~Q~I~dG~Q~E~ 168 (815)
T PRK14986 89 LLSLGIYDDVQGALEAMGLDLEELIDEENDPGLGNGGLGRLAACFLDSLATLGLPGRGYGIRYDYGMFKQNIVNGRQKES 168 (815)
T ss_pred HHhcCcHHHHHHHHHHcCCCHHHHHhcCCCCCCCCcchHHHHHHHHHHHHhCCCCeEEEEecccCCCeEEEEECCEEEEc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccCCCcceEeeCceeEEEecccceeee------e---------eeeeecccccccccccccccCCccceeccCCCC
Q psy7597 81 ATLHQKVTVLFEIAGGRKTETVPALSGQRQK------H---------ETLAPFTGLAFYKANNFVSSKAPGIWQSSKTAP 145 (188)
Q Consensus 81 pd~Wl~~g~pWe~~r~~~~~~v~i~~g~v~~------~---------e~~~PIpG~~t~n~nN~v~~~tlRLW~a~~~~~ 145 (188)
||+|+..|+|||+.|++.++.|+| +|++.. | .+++|||||+|. .++|||||+|+++.+
T Consensus 169 pd~w~~~~~pwe~~r~~~~~~V~f-~g~~~~~g~~~~w~~~~~v~avpyD~pipgy~t~------~vn~lRLW~a~~~~~ 241 (815)
T PRK14986 169 PDYWLEYGNPWEFKRHNTRYKVRF-GGRIQQEGKKTRWIETEEILAVAYDQIIPGYDTD------ATNTLRLWSAQASSE 241 (815)
T ss_pred CCCccCCCCceeEecCCcEEEEEe-CCEEEecCceeEeeCCeeEEEEeCCccccCCCCC------ceEEEEEEEeecCcc
Confidence 999999999999999999999999 665543 1 344799999765 348899999999999
Q ss_pred CCchh----hHHHHhhchhhcccccceeccCccccccc
Q psy7597 146 QNLLK----TYLKFESNTEHCMALGRVIGTSAALFKSR 179 (188)
Q Consensus 146 fnl~~----dy~~a~~~~~~ae~IsrVly~~~~~~~~~ 179 (188)
||+.. +|..|+.+++.+++||+||||+|++.+|+
T Consensus 242 fd~~~fn~g~y~~a~~~~n~~e~Is~~LYp~D~~y~Gk 279 (815)
T PRK14986 242 INLGKFNQGDYFAAVEDKNHSENVSRVLYPDDSTYSGR 279 (815)
T ss_pred cCHhhcccccHHHHhhccchhhccccccCCCCCCcccH
Confidence 99988 99999999999999999999999988875
No 7
>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3e-41 Score=326.10 Aligned_cols=150 Identities=27% Similarity=0.325 Sum_probs=136.8
Q ss_pred CCCChhHHHHHHHHHcCCCHHHHHhhhhccCCCCCCchhhHHHHHHHhhccCCCceEEEeccCCceeEEEecCCcccccc
Q psy7597 2 TTLKRPHSRSASHQKLGLDIEELEAIEEDAGLGNGGLGRLAACFLDSMATLGLSAYGYECFMMVLIYTGRIKETLQPQEA 81 (188)
Q Consensus 2 ~~l~~~~~~~~~l~~lG~~l~~i~~~E~d~~LgnGGLGrLAa~~ldS~A~l~lp~~GygirY~~G~FkQ~i~dG~QvE~p 81 (188)
.+++.-+.++++|+++|+++.|+.+.|+||++| |||||||||||||||+||+|++||||||+||||+|++.||+|+|.|
T Consensus 82 ~n~g~~~~~~~~l~~~~~~~~e~~~~e~~p~lg-GGLGrLAgcfldS~a~Lg~P~~G~Gl~Y~~GyF~Q~~~dG~Q~E~p 160 (750)
T COG0058 82 WNLGIYDDVQEALKELGYFLMEFGEHESDPGLG-GGLGRLAGCFLDSAADLGLPLTGYGLRYRYGYFRQSDVDGWQVELP 160 (750)
T ss_pred hhhcchHHHHhhHHhhhccHHHHhhcccCcccc-ccHHHHHHhHHHHHHhcCCCceEEEeeecCCceeeeccCCceEecc
Confidence 467888899999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCcceEeeCceeEEEecccceeeeeeeeeecccccccccccccccCCccceeccCCC-CCCchh-hHHHHhhch
Q psy7597 82 TLHQKVTVLFEIAGGRKTETVPALSGQRQKHETLAPFTGLAFYKANNFVSSKAPGIWQSSKTA-PQNLLK-TYLKFESNT 159 (188)
Q Consensus 82 d~Wl~~g~pWe~~r~~~~~~v~i~~g~v~~~e~~~PIpG~~t~n~nN~v~~~tlRLW~a~~~~-~fnl~~-dy~~a~~~~ 159 (188)
|.|+..|+|||+.|+.. +..+.+||+||++ + .+|||||++++.. +|+|.+ +-- ++.
T Consensus 161 ~~w~~~~~pwe~~r~~~------------a~~~d~~V~g~~~-~------~~~lrlW~a~~~~~~~~l~~~n~~---e~~ 218 (750)
T COG0058 161 DEWLKYGNPWEFLRDAE------------GVPYDVPVPGYDN-R------VVTLRLWQAQVGRVPLYLLDFNVG---ENK 218 (750)
T ss_pred hhhhccCCcceeecccC------------CceeeeeEEeccC-c------EEEEEEEEEecCccceEeecCCCc---ccc
Confidence 99999999999998711 3366799999996 2 2679999999999 999988 222 899
Q ss_pred hhcccccceeccCcc
Q psy7597 160 EHCMALGRVIGTSAA 174 (188)
Q Consensus 160 ~~ae~IsrVly~~~~ 174 (188)
..+++||+||||+|+
T Consensus 219 ~~~~~iT~~LYp~Ds 233 (750)
T COG0058 219 NDARNITRVLYPGDS 233 (750)
T ss_pred hhhhhHHhhcCCCCc
Confidence 999999999999994
No 8
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=99.94 E-value=7e-28 Score=228.63 Aligned_cols=124 Identities=19% Similarity=0.189 Sum_probs=99.6
Q ss_pred hhccCCCCCCchhhHHHHHHHhhccCCCceEEEeccCCceeEEEec-CCccccccCCcccCCCcceEeeCceeEEEeccc
Q psy7597 28 EEDAGLGNGGLGRLAACFLDSMATLGLSAYGYECFMMVLIYTGRIK-ETLQPQEATLHQKVTVLFEIAGGRKTETVPALS 106 (188)
Q Consensus 28 E~d~~LgnGGLGrLAa~~ldS~A~l~lp~~GygirY~~G~FkQ~i~-dG~QvE~pd~Wl~~g~pWe~~r~~~~~~v~i~~ 106 (188)
.+..++|||||||||||||||||+||+|++||||+|+||||+|+|. ||+|+|.|++|...+.||+.... ..
T Consensus 11 ~~~~p~ysGGLG~LAgd~l~saa~l~~p~~g~gl~Y~~Gyf~Q~i~~~g~Q~e~~~~~~~~~~p~~~~~~--------~~ 82 (601)
T TIGR02094 11 HESLPIYSGGLGVLAGDHLKSASDLGLPLVAVGLLYKQGYFRQRLDEDGWQQEAYPNNDFESLPIEKVLD--------TD 82 (601)
T ss_pred CCCCCccCchHHHHHHHHHHHHHhCCCCeEEEEeccCCCceeEEECCCCceeecCCccccCCCceEEEec--------CC
Confidence 4567999999999999999999999999999999999999999997 99999999999999999987321 12
Q ss_pred ceeeeeeeeeecccccccccccccccCCccceeccCCC-CCCchh-hHHHHhhchhhcccccceeccCcc
Q psy7597 107 GQRQKHETLAPFTGLAFYKANNFVSSKAPGIWQSSKTA-PQNLLK-TYLKFESNTEHCMALGRVIGTSAA 174 (188)
Q Consensus 107 g~v~~~e~~~PIpG~~t~n~nN~v~~~tlRLW~a~~~~-~fnl~~-dy~~a~~~~~~ae~IsrVly~~~~ 174 (188)
|+ ...+.+||||.. .++|+|++++.. ++-|.+ +. .++...+.+||++|||+|.
T Consensus 83 g~--~~~~~v~i~g~~----------~~~rlw~~~~~~v~lylld~~~---~~n~~~~R~it~~LY~~D~ 137 (601)
T TIGR02094 83 GK--WLKISVRIRGRD----------VYAKVWRVQVGRVPLYLLDTNI---PENSEDDRWITGRLYGGDK 137 (601)
T ss_pred CC--eEEEEEecCCcE----------EEEEEEEEEeCCCCEEEecCCC---cccchhhcCccCCCCCCCH
Confidence 21 124458999732 459999999732 233333 43 5667788999999999883
No 9
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=99.92 E-value=5.1e-26 Score=221.68 Aligned_cols=125 Identities=18% Similarity=0.259 Sum_probs=100.0
Q ss_pred hhccCCCCCCchhhHHHHHHHhhccCCCceEEEeccCCceeEEEec-CCccccccCCcccCCCcceEeeCceeEEEeccc
Q psy7597 28 EEDAGLGNGGLGRLAACFLDSMATLGLSAYGYECFMMVLIYTGRIK-ETLQPQEATLHQKVTVLFEIAGGRKTETVPALS 106 (188)
Q Consensus 28 E~d~~LgnGGLGrLAa~~ldS~A~l~lp~~GygirY~~G~FkQ~i~-dG~QvE~pd~Wl~~g~pWe~~r~~~~~~v~i~~ 106 (188)
.+..++|||||||||||||||+|+||+|++||||+|++|||+|+|. ||+|+|.++.|...+.||+..+.. .
T Consensus 98 ~~~lpiYsGGLG~LAgd~lksasdLg~P~vgvGllY~~GyF~Q~i~~dG~Q~e~~~~~~~~~~p~~~~~~~--------~ 169 (778)
T cd04299 98 HESLPIYSGGLGILAGDHLKAASDLGLPLVGVGLLYRQGYFRQRLDADGWQQETYPVNDFEQLPLEPVRDA--------D 169 (778)
T ss_pred CCCCCccCchHHHHHHHHHHHHHhCCCCEEEEEeCcCCCCeEEEECCCCceeecCCCcCCCCCceEEEecC--------C
Confidence 3457899999999999999999999999999999999999999997 999999999999999999874331 1
Q ss_pred ceeeeeeeeeecccccccccccccccCCccceeccCCC-CCCchh-hHHHHhhchhhcccccceeccCccc
Q psy7597 107 GQRQKHETLAPFTGLAFYKANNFVSSKAPGIWQSSKTA-PQNLLK-TYLKFESNTEHCMALGRVIGTSAAL 175 (188)
Q Consensus 107 g~v~~~e~~~PIpG~~t~n~nN~v~~~tlRLW~a~~~~-~fnl~~-dy~~a~~~~~~ae~IsrVly~~~~~ 175 (188)
|+- ..+.+||||+.++ +|+|++++.. ++-|.+ +.. +|......||.+||+.|+-
T Consensus 170 G~~--~~v~v~l~g~~v~----------~rvw~~~vg~v~lylLDtd~~---~n~~~~R~iT~~LYg~D~~ 225 (778)
T cd04299 170 GEP--VRVSVELPGRTVY----------ARVWKAQVGRVPLYLLDTDIP---ENSPDDRGITDRLYGGDQE 225 (778)
T ss_pred CCe--EEEEEeeCCCceE----------EEEEEEEcCCCCEEEecCCcc---ccchhhcccccCCCCCcHH
Confidence 211 1234899998765 9999999853 233333 322 5566778999999998863
No 10
>PF00814 Peptidase_M22: Glycoprotease family; InterPro: IPR000905 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M22 (clan MK). The type example being O-sialoglycoprotein endopeptidase (3.4.24.57 from EC) from Pasteurella haemolytica (Mannheimia haemolytica). O-Sialoglycoprotein endopeptidase is secreted by the bacterium P. haemolytica, and digests only proteins that are heavily sialylated, in particular those with sialylated serine and threonine residues []. Substrate proteins include glycophorin A and leukocyte surface antigens CD34, CD43, CD44 and CD45 [, ]. Removal of glycosylation, by treatment with neuraminidase, completely negates susceptibility to O-sialoglycoprotein endopeptidase digestion [, ]. Sequence similarity searches have revealed other members of the M22 family, from yeast, Mycobacterium, Haemophilus influenzae and the cyanobacterium Synechocystis []. The zinc-binding and catalytic residues of this family have not been determined, although the motif HMEGH may be a zinc-binding region [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2A6A_A 2GEL_G 2GEM_B 1OKJ_B 3ENO_A 3EN9_B 2VWB_B 3ENH_B 2IVO_D 2IVP_A ....
Probab=35.88 E-value=14 Score=32.14 Aligned_cols=53 Identities=23% Similarity=0.404 Sum_probs=38.3
Q ss_pred hhHHHHHHHHHcCCCHHHHHhh--hhccCCCCCCchhhHHHHHHHhhc-cCCCceEEE
Q psy7597 6 RPHSRSASHQKLGLDIEELEAI--EEDAGLGNGGLGRLAACFLDSMAT-LGLSAYGYE 60 (188)
Q Consensus 6 ~~~~~~~~l~~lG~~l~~i~~~--E~d~~LgnGGLGrLAa~~ldS~A~-l~lp~~Gyg 60 (188)
+...++++|++.|++++||-.+ =.-||++. || |.+..+.+.+|. +++|.+|+.
T Consensus 33 L~~~i~~~l~~~~~~~~did~iavt~GPGsft-gL-rvG~~~Ak~La~~~~~Pli~v~ 88 (268)
T PF00814_consen 33 LPPLIEELLKEAGISLSDIDAIAVTRGPGSFT-GL-RVGLSFAKGLALALNIPLIGVS 88 (268)
T ss_dssp HHHHHHHHHHHHTS-GGGESEEEEEEESS-HH-HH-HHHHHHHHHHHHHTT--EEEEE
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEEecCCCccc-cc-HHHHHHHHHHHHHhCCCeEeec
Confidence 4567899999999999977543 44566664 77 888889998885 999999985
No 11
>PF11212 DUF2999: Protein of unknown function (DUF2999); InterPro: IPR021376 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=34.83 E-value=40 Score=25.50 Aligned_cols=22 Identities=32% Similarity=0.521 Sum_probs=18.8
Q ss_pred hHHHHHHHHHcCCCHHHHHhhh
Q psy7597 7 PHSRSASHQKLGLDIEELEAIE 28 (188)
Q Consensus 7 ~~~~~~~l~~lG~~l~~i~~~E 28 (188)
+.-+++++.|||+|+..+++..
T Consensus 57 P~LikeAv~ELgLDFsKve~Ak 78 (82)
T PF11212_consen 57 PALIKEAVEELGLDFSKVEAAK 78 (82)
T ss_pred hHHHHHHHHHhCCcHHHHHHHH
Confidence 4568999999999999998764
No 12
>PF13443 HTH_26: Cro/C1-type HTH DNA-binding domain; PDB: 3TYR_A 3TYS_A 3B7H_A.
Probab=32.55 E-value=19 Score=23.76 Aligned_cols=23 Identities=26% Similarity=0.193 Sum_probs=16.6
Q ss_pred HHHHHHHHHcCCCHHHHHhhhhc
Q psy7597 8 HSRSASHQKLGLDIEELEAIEED 30 (188)
Q Consensus 8 ~~~~~~l~~lG~~l~~i~~~E~d 30 (188)
+.+....+-||++++||++.|+|
T Consensus 41 ~~l~~ia~~l~~~~~el~~~~~d 63 (63)
T PF13443_consen 41 DTLEKIAKALNCSPEELFEYEPD 63 (63)
T ss_dssp HHHHHHHHHHT--HHHCTECCE-
T ss_pred HHHHHHHHHcCCCHHHHhhcCCC
Confidence 45667778899999999999887
No 13
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=29.82 E-value=57 Score=21.33 Aligned_cols=23 Identities=13% Similarity=0.042 Sum_probs=17.8
Q ss_pred hhHHHHHHHHHcCCCHHHHHhhh
Q psy7597 6 RPHSRSASHQKLGLDIEELEAIE 28 (188)
Q Consensus 6 ~~~~~~~~l~~lG~~l~~i~~~E 28 (188)
..+++.++|..||++-.++...=
T Consensus 2 ~~~d~~~AL~~LGy~~~e~~~av 24 (47)
T PF07499_consen 2 ALEDALEALISLGYSKAEAQKAV 24 (47)
T ss_dssp HHHHHHHHHHHTTS-HHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH
Confidence 45788999999999998887543
No 14
>KOG4545|consensus
Probab=28.74 E-value=28 Score=30.10 Aligned_cols=21 Identities=24% Similarity=0.216 Sum_probs=17.5
Q ss_pred hhccCCCCCCchhhHHHHHHH
Q psy7597 28 EEDAGLGNGGLGRLAACFLDS 48 (188)
Q Consensus 28 E~d~~LgnGGLGrLAa~~ldS 48 (188)
-.-++++-||||.+++|++..
T Consensus 56 P~kA~vy~~glgf~~~a~~~n 76 (197)
T KOG4545|consen 56 PKKALVYGTGLGFMYQANLKN 76 (197)
T ss_pred CcceEEEEcchHHHHHHhhcC
Confidence 345889999999999998753
No 15
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=27.44 E-value=40 Score=28.54 Aligned_cols=18 Identities=50% Similarity=0.946 Sum_probs=13.9
Q ss_pred CCCchh---hHHHHHHHhhcc
Q psy7597 35 NGGLGR---LAACFLDSMATL 52 (188)
Q Consensus 35 nGGLGr---LAa~~ldS~A~l 52 (188)
.||||| .|||+|=.+.+.
T Consensus 141 ~GGlGRtGlvAAcLLl~L~~~ 161 (168)
T PF05706_consen 141 RGGLGRTGLVAACLLLELGDT 161 (168)
T ss_dssp SSSSSHHHHHHHHHHHHH-SS
T ss_pred CCCCCHHHHHHHHHHHHHcCC
Confidence 699999 689999777643
No 16
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=26.93 E-value=67 Score=28.89 Aligned_cols=40 Identities=20% Similarity=0.153 Sum_probs=33.4
Q ss_pred hhhccCCCCCCchhhHHHHHHHhhccCCCceEEEeccCCc
Q psy7597 27 IEEDAGLGNGGLGRLAACFLDSMATLGLSAYGYECFMMVL 66 (188)
Q Consensus 27 ~E~d~~LgnGGLGrLAa~~ldS~A~l~lp~~GygirY~~G 66 (188)
-|-.|-.-.||||...+.+-++|+.+|..+.=+.-+|...
T Consensus 7 ~E~~p~~k~GGl~~~~~~L~~aL~~~G~~V~Vi~p~y~~~ 46 (476)
T cd03791 7 SEVAPFAKTGGLGDVVGALPKALAKLGHDVRVIMPKYGRI 46 (476)
T ss_pred ccccccccCCcHHHHHHHHHHHHHHCCCeEEEEecCCcch
Confidence 3556667899999999999999999999888777766654
No 17
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=26.90 E-value=47 Score=22.16 Aligned_cols=17 Identities=24% Similarity=0.516 Sum_probs=12.6
Q ss_pred HHHHHcCCCHHHHHhhh
Q psy7597 12 ASHQKLGLDIEELEAIE 28 (188)
Q Consensus 12 ~~l~~lG~~l~~i~~~E 28 (188)
..++++|++++||.++=
T Consensus 8 ~~~r~lGfsL~eI~~~l 24 (65)
T PF09278_consen 8 RRLRELGFSLEEIRELL 24 (65)
T ss_dssp HHHHHTT--HHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHH
Confidence 46889999999998875
No 18
>PF04221 RelB: RelB antitoxin; InterPro: IPR007337 Plasmids may be maintained stably in bacterial populations through the action of addiction modules, in which a toxin and antidote are encoded in a cassette on the plasmid. In any daughter cell that lacks the plasmid, the toxin persists and is lethal after the antidote protein is depleted. Toxin/antitoxin pairs are also found on main chromosomes, and likely represent selfish DNA. Sequences in the seed for this alignment all were found adjacent to toxin genes. Several toxin/antitoxin pairs may occur in a single species. RelE and RelB form a toxin-antitoxin system; RelE represses translation, probably through binding ribosomes [, ]. RelB stably binds RelE, presumably deactivating it.; PDB: 2KC8_B 2K29_A.
Probab=25.50 E-value=65 Score=23.31 Aligned_cols=22 Identities=18% Similarity=0.249 Sum_probs=16.8
Q ss_pred ChhHHHHHHHHHcCCCHHHHHh
Q psy7597 5 KRPHSRSASHQKLGLDIEELEA 26 (188)
Q Consensus 5 ~~~~~~~~~l~~lG~~l~~i~~ 26 (188)
+.++++.+.|+++|+++.+.+.
T Consensus 11 ~lK~~a~~il~~~Glt~s~ai~ 32 (83)
T PF04221_consen 11 ELKEEAEAILEELGLTLSDAIN 32 (83)
T ss_dssp HHHHHHHHHHHHTT--HHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHH
Confidence 3577889999999999998875
No 19
>PF11181 YflT: Heat induced stress protein YflT
Probab=23.58 E-value=77 Score=23.65 Aligned_cols=29 Identities=28% Similarity=0.350 Sum_probs=24.6
Q ss_pred hhHHHHHHHHHcCCCHHHHHhhhhccCCC
Q psy7597 6 RPHSRSASHQKLGLDIEELEAIEEDAGLG 34 (188)
Q Consensus 6 ~~~~~~~~l~~lG~~l~~i~~~E~d~~Lg 34 (188)
..++.++.|.+||++-++...+|.+.--|
T Consensus 69 ~~d~~~~~l~~lGl~~~ea~~y~~~l~~G 97 (103)
T PF11181_consen 69 GGDELRSKLESLGLSEDEAERYEEELDQG 97 (103)
T ss_pred CcHHHHHHHHHcCCCHHHHHHHHHHHHCC
Confidence 57889999999999999999998875433
No 20
>KOG2112|consensus
Probab=22.53 E-value=1.3e+02 Score=26.31 Aligned_cols=83 Identities=22% Similarity=0.189 Sum_probs=53.9
Q ss_pred CHHHHHhhhhccCC-----CCCCchhhHHHHHHHhhccCCCceEEEeccCCceeE--EEecCCccccccCCcccCCCcce
Q psy7597 20 DIEELEAIEEDAGL-----GNGGLGRLAACFLDSMATLGLSAYGYECFMMVLIYT--GRIKETLQPQEATLHQKVTVLFE 92 (188)
Q Consensus 20 ~l~~i~~~E~d~~L-----gnGGLGrLAa~~ldS~A~l~lp~~GygirY~~G~Fk--Q~i~dG~QvE~pd~Wl~~g~pWe 92 (188)
.+..|.+.|...++ +.||.+..|++-|-+.-++.....|+ .=.+|++- +.+..|++...+ .-|=-
T Consensus 77 ~i~~Li~~e~~~Gi~~~rI~igGfs~G~a~aL~~~~~~~~~l~G~--~~~s~~~p~~~~~~~~~~~~~~------~~~i~ 148 (206)
T KOG2112|consen 77 NIANLIDNEPANGIPSNRIGIGGFSQGGALALYSALTYPKALGGI--FALSGFLPRASIGLPGWLPGVN------YTPIL 148 (206)
T ss_pred HHHHHHHHHHHcCCCccceeEcccCchHHHHHHHHhcccccccee--eccccccccchhhccCCccccC------cchhh
Confidence 46678999999996 79999999999999999885555444 44455544 333466555433 11222
Q ss_pred EeeCceeEEEecccceee
Q psy7597 93 IAGGRKTETVPALSGQRQ 110 (188)
Q Consensus 93 ~~r~~~~~~v~i~~g~v~ 110 (188)
.-.++.+..||+..|+..
T Consensus 149 ~~Hg~~d~~vp~~~g~~s 166 (206)
T KOG2112|consen 149 LCHGTADPLVPFRFGEKS 166 (206)
T ss_pred eecccCCceeehHHHHHH
Confidence 234556677777655433
No 21
>PRK11235 bifunctional antitoxin/transcriptional repressor RelB; Provisional
Probab=21.24 E-value=95 Score=23.14 Aligned_cols=22 Identities=23% Similarity=0.128 Sum_probs=18.8
Q ss_pred ChhHHHHHHHHHcCCCHHHHHh
Q psy7597 5 KRPHSRSASHQKLGLDIEELEA 26 (188)
Q Consensus 5 ~~~~~~~~~l~~lG~~l~~i~~ 26 (188)
+.++++.+.++++|+++.+...
T Consensus 11 ~lK~~A~~vl~~lGls~S~Ai~ 32 (80)
T PRK11235 11 ELKARAYAVLEKLGVTPSEALR 32 (80)
T ss_pred HHHHHHHHHHHHhCCCHHHHHH
Confidence 3578899999999999998775
No 22
>COG3077 RelB DNA-damage-inducible protein J [DNA replication, recombination, and repair]
Probab=20.49 E-value=1e+02 Score=23.58 Aligned_cols=22 Identities=18% Similarity=0.299 Sum_probs=18.6
Q ss_pred hhHHHHHHHHHcCCCHHHHHhh
Q psy7597 6 RPHSRSASHQKLGLDIEELEAI 27 (188)
Q Consensus 6 ~~~~~~~~l~~lG~~l~~i~~~ 27 (188)
.++++.++|+++|+++.+.+..
T Consensus 15 vK~eA~~Vl~~mGlt~S~airm 36 (88)
T COG3077 15 VKEEATAVLEEMGLTISDAIRM 36 (88)
T ss_pred HHHHHHHHHHHhCCCHHHHHHH
Confidence 4678889999999999998753
Done!