RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7597
(188 letters)
>2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence,
starch degrading, transferase, glycosyltransferase; HET:
PLP; 1.9A {Corynebacterium callunae}
Length = 796
Score = 93.7 bits (234), Expect = 1e-22
Identities = 25/45 (55%), Positives = 31/45 (68%)
Query: 15 QKLGLDIEELEAIEEDAGLGNGGLGRLAACFLDSMATLGLSAYGY 59
++LG ++ ++ IE DA LGNGGLGRLAACFLDS T GY
Sbjct: 93 RELGHELTDILEIENDAALGNGGLGRLAACFLDSAVTQDYPVTGY 137
>1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex,
trans; HET: GLC PLP; 1.80A {Escherichia coli} SCOP:
c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A*
2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A*
Length = 796
Score = 93.3 bits (233), Expect = 1e-22
Identities = 27/45 (60%), Positives = 33/45 (73%)
Query: 15 QKLGLDIEELEAIEEDAGLGNGGLGRLAACFLDSMATLGLSAYGY 59
+ +++ +L E D LGNGGLGRLAACFLDSMAT+G SA GY
Sbjct: 92 KAYDINLTDLLEEEIDPALGNGGLGRLAACFLDSMATVGQSATGY 136
>1ygp_A Yeast glycogen phosphorylase; phosphorylated form,
glycosyltransferase; HET: PLP; 2.80A {Saccharomyces
cerevisiae} SCOP: c.87.1.4
Length = 879
Score = 93.0 bits (232), Expect = 1e-22
Identities = 29/45 (64%), Positives = 36/45 (80%)
Query: 15 QKLGLDIEELEAIEEDAGLGNGGLGRLAACFLDSMATLGLSAYGY 59
+LG +E++ E DAGLGNGGLGRLAACF+DSMAT G+ A+GY
Sbjct: 143 DELGFKLEDVLDQEPDAGLGNGGLGRLAACFVDSMATEGIPAWGY 187
>2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH;
1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB:
2gm9_A* 1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A*
3l7b_A* 3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A*
1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ...
Length = 824
Score = 92.6 bits (231), Expect = 2e-22
Identities = 40/45 (88%), Positives = 43/45 (95%)
Query: 15 QKLGLDIEELEAIEEDAGLGNGGLGRLAACFLDSMATLGLSAYGY 59
+LGLD+EELE IEEDAGLGNGGLGRLAACFLDSMATLGL+AYGY
Sbjct: 102 YQLGLDMEELEEIEEDAGLGNGGLGRLAACFLDSMATLGLAAYGY 146
>3ps0_A Crispr-associated protein, CSA2; viral resistance, CAS, CASS, RNA-
RNA-recognition motif, nucleic-acid binding; 2.00A
{Sulfolobus solfataricus}
Length = 328
Score = 32.9 bits (74), Expect = 0.049
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 82 TLHQKVTVLFEIAGGRKTETVPALSGQRQKHE 113
T H+ V+ + + G VP +SG+ H
Sbjct: 32 TKHRTAPVVLKTSTGYLVRYVPVISGEALAHA 63
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.7 bits (74), Expect = 0.064
Identities = 10/75 (13%), Positives = 26/75 (34%), Gaps = 20/75 (26%)
Query: 122 AFYKANN---FVSSKAPGIWQSSKTAPQNLLKTYLKFESNTEHCMALGRVI--GTSAALF 176
+ + N+ + ++ + L+K Y + + R +++ALF
Sbjct: 94 CYLEGNDIHALAAK-LLQENDTTLVKTKELIKNY--ITA----RIMAKRPFDKKSNSALF 146
Query: 177 KSRQ--------VFG 183
++ +FG
Sbjct: 147 RAVGEGNAQLVAIFG 161
Score = 31.2 bits (70), Expect = 0.24
Identities = 40/205 (19%), Positives = 77/205 (37%), Gaps = 42/205 (20%)
Query: 3 TLKRPHSRSASHQKLGLDIEE-LEAIEEDAGLGNGGLGRLAACFLDSMATLGLSAYG-YE 60
L R + GL+I E LE + L + + S +G+ Y
Sbjct: 197 ELIRTTLDAEKVFTQGLNILEWLEN-PSNT----PDKDYLLSIPI-SCPLIGVIQLAHYV 250
Query: 61 CFMMVLIYT-GRIKETLQPQEATLHQK--VTVLFEIAGGRKTETVPALSGQRQKHETLAP 117
+L +T G ++ L + AT H + VT + IA ++ + +K T+
Sbjct: 251 VTAKLLGFTPGELRSYL--KGATGHSQGLVTAVA-IAET---DSWESFFVSVRKAITVLF 304
Query: 118 FTGLAFYKANNF-VSSKAPGIWQSS----KTAP----------QNLLKTYLKFESNTEHC 162
F G+ Y+A + +S P I + S + P Q ++ Y+ ++N+
Sbjct: 305 FIGVRCYEA--YPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVN-KTNSH-- 359
Query: 163 MALGRVIGTSAALFKSRQVFGDKVL 187
+ G+ + +L + V+
Sbjct: 360 LPAGKQV--EISLVNGAKNL---VV 379
Score = 30.0 bits (67), Expect = 0.50
Identities = 29/163 (17%), Positives = 50/163 (30%), Gaps = 56/163 (34%)
Query: 37 GLGR-------LAACFLDSMATLGLSAYGYECFMMVLIYTGRIKETLQPQEATLHQKVTV 89
G+G A + YG F ++ I + P T+H
Sbjct: 1630 GMGMDLYKTSKAAQDVWNRADNHFKDTYG---FSILDI----VIN--NPVNLTIH----- 1675
Query: 90 LFEIAGGRK-TETVPALSGQ-----RQKHETLAPFTGLAFYKANNFVSSKAPGIWQSSKT 143
F G++ E A+ + + K E + +K N S+ ++S
Sbjct: 1676 -FGGEKGKRIRENYSAMIFETIVDGKLKTEKI--------FKEINEHSTSY--TFRS--- 1721
Query: 144 APQNLL-KTYLKFESNTEHCMALGRVIGTSAALF---KSRQVF 182
+ LL T T+ + L A F KS+ +
Sbjct: 1722 -EKGLLSAT-----QFTQPALTL-----MEKAAFEDLKSKGLI 1753
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.14
Identities = 9/34 (26%), Positives = 17/34 (50%), Gaps = 11/34 (32%)
Query: 73 KETLQPQEATLHQKVTVLFEIAGGRKTETVPALS 106
K+ L+ +A+L K L+ ++ PAL+
Sbjct: 19 KQALKKLQASL--K---LYA------DDSAPALA 41
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain,
BRCT domain, phosphoprotein binding, phosp binding, DNA
repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe}
PDB: 3hue_A* 3i0m_A* 3i0n_A*
Length = 325
Score = 26.4 bits (57), Expect = 5.7
Identities = 12/53 (22%), Positives = 21/53 (39%)
Query: 65 VLIYTGRIKETLQPQEATLHQKVTVLFEIAGGRKTETVPALSGQRQKHETLAP 117
VL E + E + L++I R + + + +R K+ TL P
Sbjct: 272 VLNNAVYDSEKISFPEGIFCLTIEQLWKIIIERNSRELISKEIERLKYATLVP 324
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo
sapiens} PDB: 3odr_A 3ods_A 3o2q_A* 3o2s_A
Length = 386
Score = 26.3 bits (57), Expect = 8.1
Identities = 10/44 (22%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 146 QNLLKTYLKF-ESNTEHCMALGRVIGTSAALFKSRQVFGDKVLN 188
+ L+ LKF + L +G+ A + + R +F +V+
Sbjct: 224 KAALEQLLKFMVHPAISSINLTTALGSLANIARQRPMFMSEVIQ 267
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.132 0.380
Gapped
Lambda K H
0.267 0.0486 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,696,128
Number of extensions: 148198
Number of successful extensions: 258
Number of sequences better than 10.0: 1
Number of HSP's gapped: 257
Number of HSP's successfully gapped: 11
Length of query: 188
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 100
Effective length of database: 4,244,745
Effective search space: 424474500
Effective search space used: 424474500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.2 bits)