RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7597
         (188 letters)



>d1ygpa_ c.87.1.4 (A:) Glycogen phosphorylase {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 876

 Score = 89.3 bits (221), Expect = 1e-21
 Identities = 29/45 (64%), Positives = 36/45 (80%)

Query: 15  QKLGLDIEELEAIEEDAGLGNGGLGRLAACFLDSMATLGLSAYGY 59
            +LG  +E++   E DAGLGNGGLGRLAACF+DSMAT G+ A+GY
Sbjct: 140 DELGFKLEDVLDQEPDAGLGNGGLGRLAACFVDSMATEGIPAWGY 184


>d2gj4a1 c.87.1.4 (A:12-835) Glycogen phosphorylase {Rabbit
           (Oryctolagus cuniculus) [TaxId: 9986]}
          Length = 824

 Score = 87.4 bits (216), Expect = 5e-21
 Identities = 40/45 (88%), Positives = 43/45 (95%)

Query: 15  QKLGLDIEELEAIEEDAGLGNGGLGRLAACFLDSMATLGLSAYGY 59
            +LGLD+EELE IEEDAGLGNGGLGRLAACFLDSMATLGL+AYGY
Sbjct: 102 YQLGLDMEELEEIEEDAGLGNGGLGRLAACFLDSMATLGLAAYGY 146


>d1l5wa_ c.87.1.4 (A:) Maltodextrin phosphorylase (MALP)
           {Escherichia coli [TaxId: 562]}
          Length = 796

 Score = 85.5 bits (211), Expect = 2e-20
 Identities = 27/45 (60%), Positives = 33/45 (73%)

Query: 15  QKLGLDIEELEAIEEDAGLGNGGLGRLAACFLDSMATLGLSAYGY 59
           +   +++ +L   E D  LGNGGLGRLAACFLDSMAT+G SA GY
Sbjct: 92  KAYDINLTDLLEEEIDPALGNGGLGRLAACFLDSMATVGQSATGY 136


>d2rfra1 d.17.4.28 (A:1-153) Uncharacterized protein Saro3722
           {Novosphingobium aromaticivorans [TaxId: 48935]}
          Length = 153

 Score = 27.0 bits (59), Expect = 1.0
 Identities = 12/126 (9%), Positives = 29/126 (23%), Gaps = 13/126 (10%)

Query: 21  IEELEAIEE--------DAGLGNGGLGRLAACFLDSMATLGLSAYGYECFMMVLIYTGRI 72
           +  LE  EE             +G    L+  +++      +     +    +       
Sbjct: 11  LRLLEDREEIRELIARYGPLADSGDAEALSELWVEDGEYAVVGFATAKGRAAIAALIDGQ 70

Query: 73  KETLQPQEATLHQKVTVLFEIAGGRKTETVPALSGQRQKHETLAPFTGLAFYKANNFVSS 132
                  +   H        + G   T    ++  +       +       +    F   
Sbjct: 71  THRALMADGCAHFLGPATVTVEGDTATARCHSVVFRCVSGTFGSHRVSANRWT---FR-- 125

Query: 133 KAPGIW 138
           + P  W
Sbjct: 126 RTPAGW 131


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.132    0.380 

Gapped
Lambda     K      H
   0.267   0.0510    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 632,707
Number of extensions: 25926
Number of successful extensions: 36
Number of sequences better than 10.0: 1
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 5
Length of query: 188
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 108
Effective length of database: 1,309,196
Effective search space: 141393168
Effective search space used: 141393168
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.6 bits)