Query psy7599
Match_columns 161
No_of_seqs 131 out of 1083
Neff 5.8
Searched_HMMs 46136
Date Fri Aug 16 22:28:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7599.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7599hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00014 myosin-A; Provisional 100.0 3.1E-35 6.8E-40 277.2 5.3 103 10-112 461-563 (821)
2 cd01383 MYSc_type_VIII Myosin 100.0 6.2E-35 1.3E-39 270.8 5.7 103 10-112 364-466 (677)
3 cd01387 MYSc_type_XV Myosin mo 100.0 8.7E-35 1.9E-39 269.9 6.0 102 11-112 361-462 (677)
4 cd01381 MYSc_type_VII Myosin m 100.0 1E-34 2.2E-39 269.2 6.4 103 10-112 361-463 (671)
5 COG5022 Myosin heavy chain [Cy 100.0 6.2E-35 1.3E-39 281.6 4.8 105 9-113 426-531 (1463)
6 cd01382 MYSc_type_VI Myosin mo 100.0 1.1E-34 2.3E-39 270.7 5.5 103 10-112 396-498 (717)
7 cd01384 MYSc_type_XI Myosin mo 100.0 1.4E-34 3E-39 268.4 5.5 103 10-112 366-468 (674)
8 cd01379 MYSc_type_III Myosin m 100.0 2.7E-34 5.8E-39 265.7 5.9 103 10-112 372-474 (653)
9 cd01385 MYSc_type_IX Myosin mo 100.0 2.5E-34 5.4E-39 267.4 5.2 103 11-113 376-479 (692)
10 cd01378 MYSc_type_I Myosin mot 100.0 3.2E-34 7E-39 266.0 5.3 105 9-113 364-470 (674)
11 cd01377 MYSc_type_II Myosin mo 100.0 4.6E-34 9.9E-39 265.6 6.1 105 9-113 372-477 (693)
12 cd01380 MYSc_type_V Myosin mot 100.0 1.2E-33 2.6E-38 262.8 5.4 103 10-113 367-469 (691)
13 smart00242 MYSc Myosin. Large 100.0 2.5E-33 5.5E-38 260.0 5.8 104 9-112 367-470 (677)
14 cd00124 MYSc Myosin motor doma 100.0 8.9E-33 1.9E-37 256.4 5.4 104 10-113 361-464 (679)
15 cd01386 MYSc_type_XVIII Myosin 100.0 4.7E-32 1E-36 254.3 5.5 112 1-112 353-495 (767)
16 PF00063 Myosin_head: Myosin h 100.0 4.2E-32 9.2E-37 251.2 3.4 103 10-112 363-466 (689)
17 KOG0161|consensus 100.0 1.4E-31 3E-36 266.1 3.2 107 8-115 445-552 (1930)
18 KOG0164|consensus 100.0 1.1E-30 2.5E-35 239.8 3.3 101 11-111 375-476 (1001)
19 KOG0163|consensus 99.9 2.6E-28 5.6E-33 225.4 5.0 111 1-111 432-551 (1259)
20 KOG0160|consensus 99.9 2.2E-26 4.7E-31 216.6 5.2 100 10-110 367-466 (862)
21 KOG0162|consensus 99.9 1.8E-26 3.8E-31 212.7 1.2 101 9-109 381-486 (1106)
22 KOG4229|consensus 99.9 7.3E-25 1.6E-29 210.2 3.5 103 11-113 427-529 (1062)
23 COG5019 CDC3 Septin family pro 39.5 15 0.00032 32.9 1.1 35 11-45 82-117 (373)
24 PF03344 Daxx: Daxx Family; I 33.0 14 0.00031 35.6 0.0 7 15-21 292-298 (713)
25 cd01850 CDC_Septin CDC/Septin. 28.3 58 0.0013 27.3 2.9 34 12-45 64-98 (276)
26 KOG2655|consensus 27.8 54 0.0012 29.3 2.7 35 12-46 80-115 (366)
No 1
>PTZ00014 myosin-A; Provisional
Probab=100.00 E-value=3.1e-35 Score=277.19 Aligned_cols=103 Identities=28% Similarity=0.359 Sum_probs=99.7
Q ss_pred cceeeeeecCcccCCCcCcchhhhhhhchhhhhhHHHHhhhhhhHHhhhhcCceeeecccCCcHHHHHHhhcCCCccccc
Q psy7599 10 HRSLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCV 89 (161)
Q Consensus 10 ~~~IGILDi~GFE~f~~NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EGI~w~~i~~~dN~~~ldLI~~kp~GLLsL 89 (161)
..+||||||||||+|..|||+|||||||||+||++|++++|+.+|++|.+|||.|..|+|.||++||+||++||.|||+|
T Consensus 461 ~~~IGiLDI~GFE~f~~NSfEQLcINy~NEkLQq~F~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~idLie~k~~GIl~l 540 (821)
T PTZ00014 461 KVFIGMLDIFGFEVFKNNSLEQLFINITNEMLQKNFVDIVFERESKLYKDEGISTEELEYTSNESVIDLLCGKGKSVLSI 540 (821)
T ss_pred CceEEEEecccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCcHHHHHHHhcCCccHHHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCChhHHHHHHhCC
Q psy7599 90 LDDQANWSRGNPMVSCVFWMIKP 112 (161)
Q Consensus 90 LDEEc~~pk~tD~tfl~~l~~~~ 112 (161)
|||+|++|++||.+|+.++..+.
T Consensus 541 LDEec~~p~~tD~~f~~kl~~~~ 563 (821)
T PTZ00014 541 LEDQCLAPGGTDEKFVSSCNTNL 563 (821)
T ss_pred HHHHhCCCCCCHHHHHHHHHHHh
Confidence 99999999999999999998654
No 2
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=100.00 E-value=6.2e-35 Score=270.83 Aligned_cols=103 Identities=40% Similarity=0.717 Sum_probs=99.7
Q ss_pred cceeeeeecCcccCCCcCcchhhhhhhchhhhhhHHHHhhhhhhHHhhhhcCceeeecccCCcHHHHHHhhcCCCccccc
Q psy7599 10 HRSLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCV 89 (161)
Q Consensus 10 ~~~IGILDi~GFE~f~~NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EGI~w~~i~~~dN~~~ldLI~~kp~GLLsL 89 (161)
..+||||||||||+|.+|||+|||||||||+||++|++++|..+|++|.+|||.|..|+|.||++||+||+++|.|||++
T Consensus 364 ~~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~l 443 (677)
T cd01383 364 GRSISILDIYGFESFDKNSFEQFCINYANERLQQHFNRHLFKLEQEEYEEDGIDWTKVEFEDNQECLDLFEKKPLGLLSL 443 (677)
T ss_pred cceEEEeeccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCChhHHHHHHhCC
Q psy7599 90 LDDQANWSRGNPMVSCVFWMIKP 112 (161)
Q Consensus 90 LDEEc~~pk~tD~tfl~~l~~~~ 112 (161)
||++|++|++||.+|+.|+....
T Consensus 444 Ldee~~~p~~tD~~f~~kl~~~~ 466 (677)
T cd01383 444 LDEESTFPNATDLTFANKLKQHL 466 (677)
T ss_pred hHHHHcCCCCCHHHHHHHHHHHh
Confidence 99999999999999999998654
No 3
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=100.00 E-value=8.7e-35 Score=269.87 Aligned_cols=102 Identities=40% Similarity=0.621 Sum_probs=99.0
Q ss_pred ceeeeeecCcccCCCcCcchhhhhhhchhhhhhHHHHhhhhhhHHhhhhcCceeeecccCCcHHHHHHhhcCCCcccccc
Q psy7599 11 RSLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVL 90 (161)
Q Consensus 11 ~~IGILDi~GFE~f~~NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EGI~w~~i~~~dN~~~ldLI~~kp~GLLsLL 90 (161)
.+||||||||||+|..|||+|||||||||+||++|++++|..+|++|.+|||.|..|+|.||++|++||.++|.|||+||
T Consensus 361 ~~IgILDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~vF~~eq~eY~~EgI~~~~i~f~dN~~~ldLi~~kp~Gil~lL 440 (677)
T cd01387 361 LSIAILDIYGFEDLSFNSFEQLCINYANENLQYLFNKIVFQEEQEEYIREQLDWTEIAFADNQPVINLISLKPYGILRIL 440 (677)
T ss_pred ceEEEEecCccccCCCCCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCcCChHHHHHHHhcCCCchHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCChhHHHHHHhCC
Q psy7599 91 DDQANWSRGNPMVSCVFWMIKP 112 (161)
Q Consensus 91 DEEc~~pk~tD~tfl~~l~~~~ 112 (161)
|++|++|++||.+|+.++..+.
T Consensus 441 dee~~~p~~td~~~~~kl~~~~ 462 (677)
T cd01387 441 DDQCCFPQATDHTFLQKCHYHH 462 (677)
T ss_pred HHHhcCCCCchHHHHHHHHHhc
Confidence 9999999999999999997654
No 4
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=100.00 E-value=1e-34 Score=269.18 Aligned_cols=103 Identities=39% Similarity=0.675 Sum_probs=99.4
Q ss_pred cceeeeeecCcccCCCcCcchhhhhhhchhhhhhHHHHhhhhhhHHhhhhcCceeeecccCCcHHHHHHhhcCCCccccc
Q psy7599 10 HRSLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCV 89 (161)
Q Consensus 10 ~~~IGILDi~GFE~f~~NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EGI~w~~i~~~dN~~~ldLI~~kp~GLLsL 89 (161)
..+||||||||||+|.+|||+|||||||||+||++|++++|..++++|.+|||.|.+|+|.||++||+||++||.|||++
T Consensus 361 ~~~IgiLDIfGFE~f~~NsfEQLcINy~NEkLQ~~f~~~vf~~eq~eY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~l 440 (671)
T cd01381 361 RNSIGVLDIFGFENFDVNSFEQLCINFANENLQQFFVQHIFKLEQEEYNLEHINWQHIEFVDNQDALDLIAIKPLNIMSL 440 (671)
T ss_pred cceEEEEecCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccCccCcHHHHHHHhcCCCCccee
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCChhHHHHHHhCC
Q psy7599 90 LDDQANWSRGNPMVSCVFWMIKP 112 (161)
Q Consensus 90 LDEEc~~pk~tD~tfl~~l~~~~ 112 (161)
||++|++|++||.+|+.++..+.
T Consensus 441 LDee~~~p~~td~~f~~kl~~~~ 463 (671)
T cd01381 441 IDEESKFPKGTDQTMLEKLHSQH 463 (671)
T ss_pred chHhhcCCCCCHHHHHHHHHHHh
Confidence 99999999999999999997643
No 5
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=100.00 E-value=6.2e-35 Score=281.59 Aligned_cols=105 Identities=38% Similarity=0.668 Sum_probs=100.2
Q ss_pred ccceeeeeecCcccCCCcCcchhhhhhhchhhhhhHHHHhhhhhhHHhhhhcCceeeecccCCcHHHHHHhhc-CCCccc
Q psy7599 9 IHRSLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEG-KPNGLL 87 (161)
Q Consensus 9 i~~~IGILDi~GFE~f~~NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EGI~w~~i~~~dN~~~ldLI~~-kp~GLL 87 (161)
..+|||||||+|||+|..|||+|||||||||+|||+|++++|+.+|++|.+|||.|.+|+|.||++|+|||++ +|.|||
T Consensus 426 ~~~fIGVLDIyGFEiFEkNSFEQlCINYtNEKLQQ~Fn~h~FklEQEeY~kE~IeW~~Idy~DnQ~~IDLIE~~~p~GIl 505 (1463)
T COG5022 426 ASNFIGVLDIYGFEIFEKNSFEQLCINYTNEKLQQFFNQHMFKLEQEEYVKEGIEWSFIDYFDNQPCIDLIEKKNPLGIL 505 (1463)
T ss_pred cccceeEEeecchhhhccCcHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCcchhHHHhccCCCchH
Confidence 4589999999999999999999999999999999999999999999999999999999999999999999997 478999
Q ss_pred cccccccccCCCCChhHHHHHHhCCC
Q psy7599 88 CVLDDQANWSRGNPMVSCVFWMIKPK 113 (161)
Q Consensus 88 sLLDEEc~~pk~tD~tfl~~l~~~~~ 113 (161)
++|||+|..|.|||++|.++|...-.
T Consensus 506 slLDEE~~~p~atd~s~~sKL~~~l~ 531 (1463)
T COG5022 506 SLLDEECVMPHATDESFTSKLAQRLN 531 (1463)
T ss_pred hhhcHHhcCCCCCchHHHHHHHHHhc
Confidence 99999999999999999999987544
No 6
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=100.00 E-value=1.1e-34 Score=270.71 Aligned_cols=103 Identities=32% Similarity=0.569 Sum_probs=99.7
Q ss_pred cceeeeeecCcccCCCcCcchhhhhhhchhhhhhHHHHhhhhhhHHhhhhcCceeeecccCCcHHHHHHhhcCCCccccc
Q psy7599 10 HRSLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCV 89 (161)
Q Consensus 10 ~~~IGILDi~GFE~f~~NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EGI~w~~i~~~dN~~~ldLI~~kp~GLLsL 89 (161)
..+||||||||||+|.+|||+||||||||||||++|++++|..++++|.+|||+|.+|+|.||++||+||++||.|||++
T Consensus 396 ~~~IgiLDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~if~~Eq~~Y~~EgI~~~~i~~~DN~~~ldLie~k~~Gil~l 475 (717)
T cd01382 396 SNFIGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQREGLGVNEVHYVDNQDCIDLIEAKLNGILDI 475 (717)
T ss_pred CcEEEEEeccccccCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccHHHHHHHhcCCccHHHH
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCChhHHHHHHhCC
Q psy7599 90 LDDQANWSRGNPMVSCVFWMIKP 112 (161)
Q Consensus 90 LDEEc~~pk~tD~tfl~~l~~~~ 112 (161)
||++|++|++||.+|+.++..+.
T Consensus 476 LDee~~~p~~tD~~f~~kl~~~~ 498 (717)
T cd01382 476 LDEENRLPQPSDQHFTSVVHQKH 498 (717)
T ss_pred hHHHhcCCCCCHHHHHHHHHHHh
Confidence 99999999999999999998654
No 7
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=100.00 E-value=1.4e-34 Score=268.41 Aligned_cols=103 Identities=40% Similarity=0.622 Sum_probs=99.9
Q ss_pred cceeeeeecCcccCCCcCcchhhhhhhchhhhhhHHHHhhhhhhHHhhhhcCceeeecccCCcHHHHHHhhcCCCccccc
Q psy7599 10 HRSLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCV 89 (161)
Q Consensus 10 ~~~IGILDi~GFE~f~~NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EGI~w~~i~~~dN~~~ldLI~~kp~GLLsL 89 (161)
..+||||||||||+|.+|||+|||||||||+||++|++++|..+|++|.+|||.|..|+|.||++||+||.++|.|||++
T Consensus 366 ~~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~if~~eq~eY~~EgI~~~~i~~~DN~~~ldLie~~~~Gil~l 445 (674)
T cd01384 366 KSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIAL 445 (674)
T ss_pred CeEEEEEecccccccCcCCHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccCCChHHHHHHHhcCCccHHHH
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCChhHHHHHHhCC
Q psy7599 90 LDDQANWSRGNPMVSCVFWMIKP 112 (161)
Q Consensus 90 LDEEc~~pk~tD~tfl~~l~~~~ 112 (161)
||++|++|++||.+|+.++....
T Consensus 446 Ldee~~~p~~td~~f~~kl~~~~ 468 (674)
T cd01384 446 LDEACMFPKSTHETFAQKLYQTF 468 (674)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHh
Confidence 99999999999999999998754
No 8
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=100.00 E-value=2.7e-34 Score=265.72 Aligned_cols=103 Identities=37% Similarity=0.641 Sum_probs=99.8
Q ss_pred cceeeeeecCcccCCCcCcchhhhhhhchhhhhhHHHHhhhhhhHHhhhhcCceeeecccCCcHHHHHHhhcCCCccccc
Q psy7599 10 HRSLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCV 89 (161)
Q Consensus 10 ~~~IGILDi~GFE~f~~NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EGI~w~~i~~~dN~~~ldLI~~kp~GLLsL 89 (161)
..+||||||||||+|..|||+||||||||||||++|++++|..++++|.+|||+|..++|.||++||+||.+||.|||++
T Consensus 372 ~~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~vf~~Eq~eY~~EgI~~~~i~~~dN~~~ldli~~kp~Gil~l 451 (653)
T cd01379 372 QLNVGILDIFGFENFKKNSFEQLCINIANEQIQYYFNQHIFAWEQQEYLNEGVDARLVEYEDNRPLLDMFLQKPLGLLAL 451 (653)
T ss_pred cceEEEEeccccccCCCCCHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHhHccCCCcHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCChhHHHHHHhCC
Q psy7599 90 LDDQANWSRGNPMVSCVFWMIKP 112 (161)
Q Consensus 90 LDEEc~~pk~tD~tfl~~l~~~~ 112 (161)
||++|++|++||.+|+.|+..+.
T Consensus 452 Ldee~~~~~~td~~~~~kl~~~~ 474 (653)
T cd01379 452 LDEESRFPQATDQTLVEKFEDNL 474 (653)
T ss_pred HHHHhcCCCCCHHHHHHHHHHhc
Confidence 99999999999999999997764
No 9
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=100.00 E-value=2.5e-34 Score=267.35 Aligned_cols=103 Identities=47% Similarity=0.822 Sum_probs=99.5
Q ss_pred ceeeeeecCcccCCCc-CcchhhhhhhchhhhhhHHHHhhhhhhHHhhhhcCceeeecccCCcHHHHHHhhcCCCccccc
Q psy7599 11 RSLGVFKTSLVKHLKG-SCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCV 89 (161)
Q Consensus 11 ~~IGILDi~GFE~f~~-NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EGI~w~~i~~~dN~~~ldLI~~kp~GLLsL 89 (161)
.+||||||||||+|.+ |+|+|||||||||+||++|++++|..+|++|.+|||.|..|+|.||++||+||.+||.|||++
T Consensus 376 ~~IgiLDI~GFE~f~~~NsfEQLcINyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~f~dN~~~ldLie~k~~Gil~l 455 (692)
T cd01385 376 LSIGVLDIFGFEDFGRCNSFEQLCINYANEQLQYYFNQHIFKLEQEEYQGEGITWTNIEYTDNVGCIQLFSKKPTGLLYL 455 (692)
T ss_pred eEEEEEecCccccCCCCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHH
Confidence 5799999999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCChhHHHHHHhCCC
Q psy7599 90 LDDQANWSRGNPMVSCVFWMIKPK 113 (161)
Q Consensus 90 LDEEc~~pk~tD~tfl~~l~~~~~ 113 (161)
||++|++|++||.+|+.++....+
T Consensus 456 Ldee~~~p~~td~~~l~kl~~~~~ 479 (692)
T cd01385 456 LDEESNFPHATSQTLLAKFNQQHK 479 (692)
T ss_pred hHHHhcCCCCCHHHHHHHHHHHhC
Confidence 999999999999999999987543
No 10
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=100.00 E-value=3.2e-34 Score=265.96 Aligned_cols=105 Identities=34% Similarity=0.581 Sum_probs=100.8
Q ss_pred ccceeeeeecCcccCCCcCcchhhhhhhchhhhhhHHHHhhhhhhHHhhhhcCceeeecccCCcHHHHHHhhc-CCCccc
Q psy7599 9 IHRSLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEG-KPNGLL 87 (161)
Q Consensus 9 i~~~IGILDi~GFE~f~~NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EGI~w~~i~~~dN~~~ldLI~~-kp~GLL 87 (161)
...+||||||||||+|.+|||+|||||||||+||++|++++|..++++|.+|||.|..|+|.||++|++||.+ +|.|||
T Consensus 364 ~~~~IgILDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~~F~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~~~~~Gil 443 (674)
T cd01378 364 KNKVIGVLDIYGFEIFQKNSFEQFCINYVNEKLQQIFIELTLKAEQEEYVREGIKWTPIEYFNNKIVCDLIEGKRPPGIF 443 (674)
T ss_pred CcceEEEEecccccccccccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCcCChHHHHHHHhcCCCcchH
Confidence 3578999999999999999999999999999999999999999999999999999999999999999999999 899999
Q ss_pred cccccccccC-CCCChhHHHHHHhCCC
Q psy7599 88 CVLDDQANWS-RGNPMVSCVFWMIKPK 113 (161)
Q Consensus 88 sLLDEEc~~p-k~tD~tfl~~l~~~~~ 113 (161)
++||++|++| ++||.+|+.|+.....
T Consensus 444 ~lLdee~~~p~~~tD~~~~~kl~~~~~ 470 (674)
T cd01378 444 SILDDVCATPHEGTDQTFLEKLNKKFS 470 (674)
T ss_pred HHHHHHHcCCCCCChHHHHHHHHHHhc
Confidence 9999999999 9999999999987543
No 11
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=100.00 E-value=4.6e-34 Score=265.64 Aligned_cols=105 Identities=35% Similarity=0.602 Sum_probs=100.0
Q ss_pred ccceeeeeecCcccCCCcCcchhhhhhhchhhhhhHHHHhhhhhhHHhhhhcCceeeeccc-CCcHHHHHHhhcCCCccc
Q psy7599 9 IHRSLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLL 87 (161)
Q Consensus 9 i~~~IGILDi~GFE~f~~NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EGI~w~~i~~-~dN~~~ldLI~~kp~GLL 87 (161)
...+||||||||||+|..|||+|||||||||+||++|++++|+.++++|.+|||.|..++| .||++||+||++||.|||
T Consensus 372 ~~~~IgiLDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~~~~dn~~~ldLie~~~~Gil 451 (693)
T cd01377 372 RAYFIGVLDIAGFEIFDFNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWTFIDFGLDLQPTIDLIEKNPMGIL 451 (693)
T ss_pred CCceEEEEecccccccCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCCcHHHHHHHhcCCCchH
Confidence 3468999999999999999999999999999999999999999999999999999999999 599999999999999999
Q ss_pred cccccccccCCCCChhHHHHHHhCCC
Q psy7599 88 CVLDDQANWSRGNPMVSCVFWMIKPK 113 (161)
Q Consensus 88 sLLDEEc~~pk~tD~tfl~~l~~~~~ 113 (161)
++||++|++|++||.+|+.++.....
T Consensus 452 ~lLdee~~~~~~tD~~~~~kl~~~~~ 477 (693)
T cd01377 452 SLLDEECVFPKATDKTFVEKLYDNHL 477 (693)
T ss_pred hhhhHHhcCCCCCHHHHHHHHHHHhc
Confidence 99999999999999999999986543
No 12
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=99.98 E-value=1.2e-33 Score=262.80 Aligned_cols=103 Identities=42% Similarity=0.686 Sum_probs=98.9
Q ss_pred cceeeeeecCcccCCCcCcchhhhhhhchhhhhhHHHHhhhhhhHHhhhhcCceeeecccCCcHHHHHHhhcCCCccccc
Q psy7599 10 HRSLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCV 89 (161)
Q Consensus 10 ~~~IGILDi~GFE~f~~NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EGI~w~~i~~~dN~~~ldLI~~kp~GLLsL 89 (161)
..+||||||||||+|.+|||+|||||||||+||++|++++|..+|++|.+|||.|..++|.||++||+||.+ |.|||++
T Consensus 367 ~~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~~f~~~iF~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~-~~Gil~l 445 (691)
T cd01380 367 TSFIGVLDIYGFETFEKNSFEQFCINYANEKLQQQFNQHVFKLEQEEYLKEGIEWTFIDFYDNQPCIDLIES-KLGILSL 445 (691)
T ss_pred cceEEEEecCcccccCCCCHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCccccCCCCHHHHHHHhC-CCchHHH
Confidence 457999999999999999999999999999999999999999999999999999999999999999999996 6999999
Q ss_pred cccccccCCCCChhHHHHHHhCCC
Q psy7599 90 LDDQANWSRGNPMVSCVFWMIKPK 113 (161)
Q Consensus 90 LDEEc~~pk~tD~tfl~~l~~~~~ 113 (161)
||++|++|++||.+|+.|+..+..
T Consensus 446 Ldee~~~p~~td~~f~~kl~~~~~ 469 (691)
T cd01380 446 LDEECRLPKGSDESWAQKLYNKLP 469 (691)
T ss_pred hHHhhcCCCCChHHHHHHHHHHhc
Confidence 999999999999999999987654
No 13
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=99.98 E-value=2.5e-33 Score=260.03 Aligned_cols=104 Identities=41% Similarity=0.707 Sum_probs=100.5
Q ss_pred ccceeeeeecCcccCCCcCcchhhhhhhchhhhhhHHHHhhhhhhHHhhhhcCceeeecccCCcHHHHHHhhcCCCcccc
Q psy7599 9 IHRSLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 88 (161)
Q Consensus 9 i~~~IGILDi~GFE~f~~NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EGI~w~~i~~~dN~~~ldLI~~kp~GLLs 88 (161)
...+||||||||||+|.+|||+||||||||||||++|++++|..++++|.+|||.|..++|.||++||+||.++|.|||+
T Consensus 367 ~~~~IgiLDifGFE~f~~NsfEQLcINyaNEkLq~~f~~~~f~~eq~~y~~EgI~~~~i~~~dN~~~l~li~~~~~Gil~ 446 (677)
T smart00242 367 STYFIGVLDIYGFEIFEVNSFEQLCINYANEKLQQFFNQHVFKLEQEEYEREGIDWTFIDFFDNQDCIDLIEKKPPGILS 446 (677)
T ss_pred CceEEEEEecccccccccCCHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHHcCCccHHH
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCChhHHHHHHhCC
Q psy7599 89 VLDDQANWSRGNPMVSCVFWMIKP 112 (161)
Q Consensus 89 LLDEEc~~pk~tD~tfl~~l~~~~ 112 (161)
+||++|++|++||.+|+.++..+.
T Consensus 447 lLdee~~~~~~td~~~~~kl~~~~ 470 (677)
T smart00242 447 LLDEECRFPKATDQTFLEKLNQTH 470 (677)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHh
Confidence 999999999999999999998754
No 14
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=99.97 E-value=8.9e-33 Score=256.39 Aligned_cols=104 Identities=43% Similarity=0.720 Sum_probs=100.3
Q ss_pred cceeeeeecCcccCCCcCcchhhhhhhchhhhhhHHHHhhhhhhHHhhhhcCceeeecccCCcHHHHHHhhcCCCccccc
Q psy7599 10 HRSLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCV 89 (161)
Q Consensus 10 ~~~IGILDi~GFE~f~~NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EGI~w~~i~~~dN~~~ldLI~~kp~GLLsL 89 (161)
..+||||||||||+|..|+|+|||||||||+||++|++++|..++++|.+|||.|..++|.||++|++||.++|.|||++
T Consensus 361 ~~~IgiLDi~GFE~f~~NsfEQLcINy~NEkLq~~f~~~~f~~eq~~y~~EgI~~~~i~~~dn~~~ldli~~~~~Gi~~l 440 (679)
T cd00124 361 SLFIGILDIFGFEIFEKNSFEQLCINYANEKLQQFFNQHVFKLEQEEYQEEGIDWESIDFTDNQEVIDLIEKKPGGLLSL 440 (679)
T ss_pred CceeeEEeccccccCCCCCHHHHhcccchHHHHHHHHHHHHHHHHHHHHhcCCCccCCcCCCCHHHHHHHhcCCCcHHHH
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCChhHHHHHHhCCC
Q psy7599 90 LDDQANWSRGNPMVSCVFWMIKPK 113 (161)
Q Consensus 90 LDEEc~~pk~tD~tfl~~l~~~~~ 113 (161)
||++|++|++||.+|+.++.....
T Consensus 441 Ldee~~~~~~~d~~~~~kl~~~~~ 464 (679)
T cd00124 441 LDEECLFPKGTDETFLEKLNNKLK 464 (679)
T ss_pred HHHHhCCCCCCHHHHHHHHHHHhc
Confidence 999999999999999999986654
No 15
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=99.97 E-value=4.7e-32 Score=254.35 Aligned_cols=112 Identities=24% Similarity=0.319 Sum_probs=100.4
Q ss_pred Cccccccccc----------ceeeeeecCcccCCCc------CcchhhhhhhchhhhhhHHHHhhhhhhHHhhhhcCcee
Q psy7599 1 MYLQLDIGIH----------RSLGVFKTSLVKHLKG------SCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRW 64 (161)
Q Consensus 1 ~~~~~~i~i~----------~~IGILDi~GFE~f~~------NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EGI~w 64 (161)
||.|++..|+ .+||||||||||+|.+ |||+|||||||||+||++|++++|+.+|++|.+|||+|
T Consensus 353 LF~wiV~~IN~~l~~~~~~~~~IgiLDIfGFE~f~~n~~~~~NsfEQLcINyaNEkLQq~f~~~vF~~Eq~eY~~EGI~~ 432 (767)
T cd01386 353 LFAAVVSLINRSISSSHHSIASIMLVDTPGFQNPASQGKDRAATFEELCHNYLQERLQLLFHHRTFVQPLERYAEEGVEV 432 (767)
T ss_pred HHHHHHHHHHHHhCCCCCCCcEEEEEecccccccccccccCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCc
Confidence 4566665543 5799999999999974 89999999999999999999999999999999999999
Q ss_pred eeccc-CCcHHHHHHhhcCC--------------CccccccccccccCCCCChhHHHHHHhCC
Q psy7599 65 RHIEF-SDNTLCLQLVEGKP--------------NGLLCVLDDQANWSRGNPMVSCVFWMIKP 112 (161)
Q Consensus 65 ~~i~~-~dN~~~ldLI~~kp--------------~GLLsLLDEEc~~pk~tD~tfl~~l~~~~ 112 (161)
..+.+ +||.+||+||+++| .|||+||||+|++|++||.+|+.|+..+.
T Consensus 433 ~~~~~~~dn~~~i~lid~~p~~~~~~~~~~~~~~~GIl~lLDEec~~p~~tD~~f~~kl~~~~ 495 (767)
T cd01386 433 EFDLAEPSPGTTVALVDQAPQQVVVPAGLRAEDARGLLWLLDEEALVPGSSDDTFLERLFAAY 495 (767)
T ss_pred cccccCCCchhhHHHhhcccccccccchhhccCCCchhhhhhHhhcCCCCcHHHHHHHHHHHh
Confidence 87555 79999999999865 59999999999999999999999998654
No 16
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=99.97 E-value=4.2e-32 Score=251.23 Aligned_cols=103 Identities=44% Similarity=0.776 Sum_probs=93.0
Q ss_pred cceeeeeecCcccCCCcCcchhhhhhhchhhhhhHHHHhhhhhhHHhhhhcCceeeeccc-CCcHHHHHHhhcCCCcccc
Q psy7599 10 HRSLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLC 88 (161)
Q Consensus 10 ~~~IGILDi~GFE~f~~NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EGI~w~~i~~-~dN~~~ldLI~~kp~GLLs 88 (161)
..+||||||||||+|..|+|+||||||||||||++|++++|..++.+|.+|||.|..++| .||.+||+||.++|.|||+
T Consensus 363 ~~~IgILDi~GFE~~~~N~fEQLciNyanErLq~~f~~~~f~~e~~~y~~EgI~~~~i~~~~dn~~~ldLi~~~~~Gil~ 442 (689)
T PF00063_consen 363 SSSIGILDIFGFENFSVNSFEQLCINYANERLQQFFNQHIFKSEQEEYKEEGIDWPFIDFNPDNQPCLDLIEKKPKGILS 442 (689)
T ss_dssp SEEEEEEEEE-B---SSB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCS-GCGHHHHHHHHHHSSTTSHHH
T ss_pred cccCcccCccccccccccccccceeeeccccccceeeeecccccccccccccccccccccccCchhhhhhhccccCCHHH
Confidence 478999999999999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred ccccccccCCCCChhHHHHHHhCC
Q psy7599 89 VLDDQANWSRGNPMVSCVFWMIKP 112 (161)
Q Consensus 89 LLDEEc~~pk~tD~tfl~~l~~~~ 112 (161)
+||++|++|++||.+|+.++..+.
T Consensus 443 lLdee~~~~~~sd~~fl~kl~~~~ 466 (689)
T PF00063_consen 443 LLDEECLLPRGSDESFLEKLLKRH 466 (689)
T ss_dssp HHHHHCTSTTS-HHHHHHHHHHHH
T ss_pred HhhhhhhcccchhhHHHHHHHhhc
Confidence 999999999999999999998765
No 17
>KOG0161|consensus
Probab=99.97 E-value=1.4e-31 Score=266.13 Aligned_cols=107 Identities=36% Similarity=0.575 Sum_probs=100.8
Q ss_pred cccceeeeeecCcccCCCcCcchhhhhhhchhhhhhHHHHhhhhhhHHhhhhcCceeeeccc-CCcHHHHHHhhcCCCcc
Q psy7599 8 GIHRSLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGL 86 (161)
Q Consensus 8 ~i~~~IGILDi~GFE~f~~NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EGI~w~~i~~-~dN~~~ldLI~~kp~GL 86 (161)
....|||||||+||++|..|||+||||||+||+||++|++++|..+|.+|.++||.|.+|+| .|-+||++||.+ |+||
T Consensus 445 ~~~~fIgvLDiaGFEIfe~nSFEQLciNytnEkLQqfFnh~mFvlEqeeY~~EgIew~fidfG~Dlq~~idLIEk-p~Gi 523 (1930)
T KOG0161|consen 445 QRDYFIGVLDIAGFEIFEFNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWDFIDFGLDLQPTIDLIEK-PMGI 523 (1930)
T ss_pred ccCCcceeeeeccccccCcCCHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHhCCceeeeccccchhhhHHHHhc-hhhH
Confidence 34478999999999999999999999999999999999999999999999999999999999 799999999995 7899
Q ss_pred ccccccccccCCCCChhHHHHHHhCCCCC
Q psy7599 87 LCVLDDQANWSRGNPMVSCVFWMIKPKEK 115 (161)
Q Consensus 87 LsLLDEEc~~pk~tD~tfl~~l~~~~~~~ 115 (161)
||+||++|++|++||.||+.+|+....-|
T Consensus 524 ~slLdEEc~~PkAtd~tf~~kL~~~~~gk 552 (1930)
T KOG0161|consen 524 LSLLDEECVVPKATDKTFLEKLCDQHLGK 552 (1930)
T ss_pred HHHHHHHHhcCCCccchHHHHHHHHhhcc
Confidence 99999999999999999999999877433
No 18
>KOG0164|consensus
Probab=99.96 E-value=1.1e-30 Score=239.78 Aligned_cols=101 Identities=35% Similarity=0.554 Sum_probs=96.9
Q ss_pred ceeeeeecCcccCCCcCcchhhhhhhchhhhhhHHHHhhhhhhHHhhhhcCceeeecccCCcHHHHHHhhcCCCcccccc
Q psy7599 11 RSLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVL 90 (161)
Q Consensus 11 ~~IGILDi~GFE~f~~NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EGI~w~~i~~~dN~~~ldLI~~kp~GLLsLL 90 (161)
.+||+||||||++|..|||+|||||||||+||++|+..+++.+|++|.+|||.|.+|+|++|..++||++.+..|||+||
T Consensus 375 ~Vigvldiygfeif~~NSFEQfcINYCNEKLQQlFIel~LKqEQEEY~rEgI~W~~i~YFnN~iIcdLvE~~~~GIlail 454 (1001)
T KOG0164|consen 375 TVIGVLDIYGFEIFQDNSFEQFCINYCNEKLQQLFIELVLKQEQEEYEREGIEWTHIDYFNNKIICDLVEQPHKGILAIL 454 (1001)
T ss_pred eEEEEEEeeeEEeecCCcHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCCceehhhcCCceeeehhccCccchhhhh
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCC-CCChhHHHHHHhC
Q psy7599 91 DDQANWSR-GNPMVSCVFWMIK 111 (161)
Q Consensus 91 DEEc~~pk-~tD~tfl~~l~~~ 111 (161)
|++|+.|+ .||.+|+.+|-.+
T Consensus 455 De~Cl~~G~vtD~tfL~~l~~~ 476 (1001)
T KOG0164|consen 455 DEACLRPGTVTDETFLEKLNQK 476 (1001)
T ss_pred hHHhcCCCccchHHHHHHHHHH
Confidence 99999996 7999999888654
No 19
>KOG0163|consensus
Probab=99.94 E-value=2.6e-28 Score=225.38 Aligned_cols=111 Identities=34% Similarity=0.532 Sum_probs=103.1
Q ss_pred Cccccccccc---------ceeeeeecCcccCCCcCcchhhhhhhchhhhhhHHHHhhhhhhHHhhhhcCceeeecccCC
Q psy7599 1 MYLQLDIGIH---------RSLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSD 71 (161)
Q Consensus 1 ~~~~~~i~i~---------~~IGILDi~GFE~f~~NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EGI~w~~i~~~d 71 (161)
||-|++.-|+ .+|||||+.|||.|.+|||+|||||||||+||++|+.++++.+|+.|.+||+.++.|.|.|
T Consensus 432 LFD~lV~~iNqsiPFe~St~fiGVLDiAGFEyf~~NSFEQFCINyCNEKLQ~FFNerILkeEQElYekEGLnv~ei~f~D 511 (1259)
T KOG0163|consen 432 LFDWLVGRINQSIPFEKSTFFIGVLDIAGFEYFAVNSFEQFCINYCNEKLQKFFNERILKEEQELYEKEGLNVPEIEFTD 511 (1259)
T ss_pred HHHHHHHHhhcccccccccceeEEEeeccceeeecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEecc
Confidence 3566666655 5689999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHhhcCCCccccccccccccCCCCChhHHHHHHhC
Q psy7599 72 NTLCLQLVEGKPNGLLCVLDDQANWSRGNPMVSCVFWMIK 111 (161)
Q Consensus 72 N~~~ldLI~~kp~GLLsLLDEEc~~pk~tD~tfl~~l~~~ 111 (161)
|++|++||+.|..|||.|||++.++|+++++.|..+..-.
T Consensus 512 NqDcIeL~E~K~~GifdlLDEEaklP~~s~qhFT~~vHe~ 551 (1259)
T KOG0163|consen 512 NQDCIELIEAKSNGIFDLLDEEAKLPKPSYQHFTARVHES 551 (1259)
T ss_pred chhHHHHHHHhccchhhhhhhhccCCCcchHHHHHHHHHh
Confidence 9999999999999999999999999999999998876543
No 20
>KOG0160|consensus
Probab=99.92 E-value=2.2e-26 Score=216.64 Aligned_cols=100 Identities=45% Similarity=0.732 Sum_probs=97.2
Q ss_pred cceeeeeecCcccCCCcCcchhhhhhhchhhhhhHHHHhhhhhhHHhhhhcCceeeecccCCcHHHHHHhhcCCCccccc
Q psy7599 10 HRSLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCV 89 (161)
Q Consensus 10 ~~~IGILDi~GFE~f~~NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EGI~w~~i~~~dN~~~ldLI~~kp~GLLsL 89 (161)
..+|||||++||+.|..|+|+|||||||||+||+.|++|+|+.+|++|..++|.|..++|.||++|+++|.+ |.|+++|
T Consensus 367 ~~~igVLDiYgFEsF~~nsfeQfcINyanEkLqq~fnqHvfk~Eqeey~~e~i~Ws~ief~dNq~~~~lie~-~~Gi~~L 445 (862)
T KOG0160|consen 367 ERFIGVLDIYGFESFEVNSFEQFCINYANEKLQQQFNQHVFKLEQEEYTKEEIDWSGIEFRDNQECLDLIEK-PLGILAL 445 (862)
T ss_pred cceeeeehcccccccccCcHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHhhccccccccCcCccchhhhhcc-ccchhhc
Confidence 478999999999999999999999999999999999999999999999999999999999999999999997 9999999
Q ss_pred cccccccCCCCChhHHHHHHh
Q psy7599 90 LDDQANWSRGNPMVSCVFWMI 110 (161)
Q Consensus 90 LDEEc~~pk~tD~tfl~~l~~ 110 (161)
||++|++|++||.+|..+|..
T Consensus 446 lde~c~lp~~t~~~~a~KL~~ 466 (862)
T KOG0160|consen 446 LDEECMLPKGTDETLAQKLYQ 466 (862)
T ss_pred cchhccCCCCCcchHHHHHHH
Confidence 999999999999999998875
No 21
>KOG0162|consensus
Probab=99.92 E-value=1.8e-26 Score=212.75 Aligned_cols=101 Identities=32% Similarity=0.555 Sum_probs=94.5
Q ss_pred ccceeeeeecCcccCCCcCcchhhhhhhchhhhhhHHHHhhhhhhHHhhhhcCceeeecccCCcHHHHHHhhc-CCCccc
Q psy7599 9 IHRSLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEG-KPNGLL 87 (161)
Q Consensus 9 i~~~IGILDi~GFE~f~~NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EGI~w~~i~~~dN~~~ldLI~~-kp~GLL 87 (161)
...+||||||+|||+|.+|||+||||||.||+||+.|++.+++.+|++|.+|||.|.+|.|+||.-++|||+. +|.|||
T Consensus 381 ~~~sIGiLDIYGFEIFe~N~FEQ~CINfVNEKLQQIFIeLTLKaEQEeYvrE~I~WTpIkYFnNKvVCDLIE~K~PPGim 460 (1106)
T KOG0162|consen 381 EEYSIGILDIYGFEIFENNGFEQFCINFVNEKLQQIFIELTLKAEQEEYVREGIKWTPIKYFNNKVVCDLIENKRPPGIM 460 (1106)
T ss_pred cccceeeEEeeeeeecccCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcccccchhhcCCeeeeehhhccCCchHH
Confidence 4468999999999999999999999999999999999999999999999999999999999999999999997 588999
Q ss_pred cccccccccC----CCCChhHHHHHH
Q psy7599 88 CVLDDQANWS----RGNPMVSCVFWM 109 (161)
Q Consensus 88 sLLDEEc~~p----k~tD~tfl~~l~ 109 (161)
++||+.|... .|.|++|+.+|-
T Consensus 461 s~ldD~~At~Ha~~~~aDqa~~qrLn 486 (1106)
T KOG0162|consen 461 SALDDVCATAHADSEGADQALLQRLN 486 (1106)
T ss_pred HHHHHHHHHhccccchhHHHHHHHHH
Confidence 9999999864 578889988875
No 22
>KOG4229|consensus
Probab=99.90 E-value=7.3e-25 Score=210.17 Aligned_cols=103 Identities=41% Similarity=0.749 Sum_probs=99.7
Q ss_pred ceeeeeecCcccCCCcCcchhhhhhhchhhhhhHHHHhhhhhhHHhhhhcCceeeecccCCcHHHHHHhhcCCCcccccc
Q psy7599 11 RSLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVL 90 (161)
Q Consensus 11 ~~IGILDi~GFE~f~~NsfEQLcINyaNErLq~~f~~~if~~eqeeY~~EGI~w~~i~~~dN~~~ldLI~~kp~GLLsLL 90 (161)
.+|||||+|||++|..|+|+|+||||||++||.+|++++|..++.+|..++|.|..+.|.||.+|+++|..||+|||.+|
T Consensus 427 ~~IgiLdiFgfE~f~~nsfEq~~in~Ane~lQ~~fnqhIf~~Eq~ey~~e~I~w~~i~~~dN~~~ldli~~kp~gil~li 506 (1062)
T KOG4229|consen 427 LSIGILDIFGFENFERNSFEQLCINLANEQLQYYFNQHIFALEQEEYDNESIDWRNIEFADNRRRLDLISPKPMGILSLI 506 (1062)
T ss_pred ceeehhhhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCCCeeeeeeeeccchhhhhccCccchhhee
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCChhHHHHHHhCCC
Q psy7599 91 DDQANWSRGNPMVSCVFWMIKPK 113 (161)
Q Consensus 91 DEEc~~pk~tD~tfl~~l~~~~~ 113 (161)
|++|.+|++||.|++.|+-....
T Consensus 507 Dees~fP~~td~tl~~k~~~q~~ 529 (1062)
T KOG4229|consen 507 DEESRFPKATDQTLLLKLNMQHG 529 (1062)
T ss_pred cccCcCCchHHHHHHHHhhhhhh
Confidence 99999999999999999877654
No 23
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=39.50 E-value=15 Score=32.93 Aligned_cols=35 Identities=14% Similarity=0.245 Sum_probs=23.2
Q ss_pred ceeeeeecCcccCCCcCcc-hhhhhhhchhhhhhHH
Q psy7599 11 RSLGVFKTSLVKHLKGSCF-EQLCINYANEHLQYYF 45 (161)
Q Consensus 11 ~~IGILDi~GFE~f~~Nsf-EQLcINyaNErLq~~f 45 (161)
--+.|+|+|||..+-.|+. -+-.++|...+..+|+
T Consensus 82 ~~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl 117 (373)
T COG5019 82 LNLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYL 117 (373)
T ss_pred EEEEEeccCCccccccccccHHHHHHHHHHHHHHHH
Confidence 3478999999998766653 2344566666655554
No 24
>PF03344 Daxx: Daxx Family; InterPro: IPR005012 Daxx is a ubiquitously expressed protein that functions, in part, as a transcriptional co-repressor through its interaction with a growing number of nuclear, DNA-associated proteins. Human Daxx contains four structural domains commonly found in transcriptional regulatory proteins: two predicted paired amphipathic helices, an acid-rich domain and a Ser/Pro/Thr (SPT)-rich domain. The post-translational modification status of the SPT-domain of hDaxx regulates its association with transcription factors such as Pax3 and ETS-1, effectively bringing hDaxx to sites of active transcription. Through its presence at the site of active transcription, hDaxx could then be able to associate with acetylated histones present in the nucleosomes and Dek that is associated with chromatin. Through its association with the SPT-domain of hDaxx, histone deacetylases may also be brought to the site of active transcription. As a consequence, nucleosomes in the vicinity of the site of active transcription will have the histone tails deacetylated, allowing the deactylated tail to bind to DNA, thereby leading to an inactive chromatin structure and transcriptional repression []. The Daxx protein (also known as the Fas-binding protein) is thought to play a role in apoptosis as a component of nuclear promyelocytic leukemia protein (PML) oncogenic domains (PODS). Daxx associates with PODs through a direct interaction with PML, a critical component of PODs. The interaction is a dynamic, cell cycle regulated event and is dependent on the post-translational modification of PML by the small ubiquitin-related modifier SUMO-1. ; PDB: 2KZS_A 2KZU_A.
Probab=32.99 E-value=14 Score=35.65 Aligned_cols=7 Identities=0% Similarity=-0.425 Sum_probs=0.0
Q ss_pred eeecCcc
Q psy7599 15 VFKTSLV 21 (161)
Q Consensus 15 ILDi~GF 21 (161)
-..+|-|
T Consensus 292 ~~~fPD~ 298 (713)
T PF03344_consen 292 MDNFPDY 298 (713)
T ss_dssp -------
T ss_pred ccccccc
Confidence 3344444
No 25
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=28.30 E-value=58 Score=27.30 Aligned_cols=34 Identities=15% Similarity=0.206 Sum_probs=23.2
Q ss_pred eeeeeecCcccCCCcCcc-hhhhhhhchhhhhhHH
Q psy7599 12 SLGVFKTSLVKHLKGSCF-EQLCINYANEHLQYYF 45 (161)
Q Consensus 12 ~IGILDi~GFE~f~~Nsf-EQLcINyaNErLq~~f 45 (161)
.+.|+|+|||..+..|+. -+..++|.+.++..|.
T Consensus 64 ~l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l 98 (276)
T cd01850 64 KLTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYL 98 (276)
T ss_pred EEEEEecCCccccccchhhHHHHHHHHHHHHHHHH
Confidence 478999999987755542 2455567777766555
No 26
>KOG2655|consensus
Probab=27.79 E-value=54 Score=29.33 Aligned_cols=35 Identities=17% Similarity=0.264 Sum_probs=25.6
Q ss_pred eeeeeecCcccCCCcCcch-hhhhhhchhhhhhHHH
Q psy7599 12 SLGVFKTSLVKHLKGSCFE-QLCINYANEHLQYYFN 46 (161)
Q Consensus 12 ~IGILDi~GFE~f~~NsfE-QLcINyaNErLq~~f~ 46 (161)
-+.|+|+|||-.+-.|+.. +-.++|...+.++|+.
T Consensus 80 ~LtvidtPGfGD~vdns~~w~pi~~yi~~q~~~yl~ 115 (366)
T KOG2655|consen 80 NLTVIDTPGFGDAVDNSNCWRPIVNYIDSQFDQYLD 115 (366)
T ss_pred eeEEeccCCCcccccccccchhhhHHHHHHHHHHHh
Confidence 3678999999887555542 5666888887777764
Done!