RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7599
(161 letters)
>gnl|CDD|238681 cd01385, MYSc_type_IX, Myosin motor domain, type IX myosins. Myosin
IX is a processive single-headed motor, which might play
a role in signalling. This catalytic (head) domain has
ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 692
Score = 121 bits (304), Expect = 1e-32
Identities = 46/76 (60%), Positives = 57/76 (75%), Gaps = 2/76 (2%)
Query: 26 GSC--FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKP 83
G C FEQLCINYANE LQYYFNQH+F+ EQEEY EGI W +IE++DN C+QL KP
Sbjct: 390 GRCNSFEQLCINYANEQLQYYFNQHIFKLEQEEYQGEGITWTNIEYTDNVGCIQLFSKKP 449
Query: 84 NGLLCVLDDQANWSRG 99
GLL +LD+++N+
Sbjct: 450 TGLLYLLDEESNFPHA 465
>gnl|CDD|214580 smart00242, MYSc, Myosin. Large ATPases. ATPase; molecular motor.
Muscle contraction consists of a cyclical interaction
between myosin and actin. The core of the myosin
structure is similar in fold to that of kinesin.
Length = 677
Score = 117 bits (296), Expect = 3e-31
Identities = 41/65 (63%), Positives = 51/65 (78%)
Query: 29 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 88
FEQLCINYANE LQ +FNQHVF+ EQEEY +EGI W I+F DN C+ L+E KP G+L
Sbjct: 387 FEQLCINYANEKLQQFFNQHVFKLEQEEYEREGIDWTFIDFFDNQDCIDLIEKKPPGILS 446
Query: 89 VLDDQ 93
+LD++
Sbjct: 447 LLDEE 451
>gnl|CDD|238071 cd00124, MYSc, Myosin motor domain. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 679
Score = 110 bits (277), Expect = 9e-29
Identities = 41/66 (62%), Positives = 51/66 (77%)
Query: 28 CFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 87
FEQLCINYANE LQ +FNQHVF+ EQEEY +EGI W I+F+DN + L+E KP GLL
Sbjct: 379 SFEQLCINYANEKLQQFFNQHVFKLEQEEYQEEGIDWESIDFTDNQEVIDLIEKKPGGLL 438
Query: 88 CVLDDQ 93
+LD++
Sbjct: 439 SLLDEE 444
>gnl|CDD|238677 cd01381, MYSc_type_VII, Myosin motor domain, type VII myosins.
Myosins in this group have been associated with
functions in sensory systems such as vision and hearing.
This catalytic (head) domain has ATPase activity and
belongs to the larger group of P-loop NTPases. Myosins
are actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 671
Score = 104 bits (261), Expect = 1e-26
Identities = 40/89 (44%), Positives = 60/89 (67%)
Query: 11 RSLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS 70
S+GV ++ + FEQLCIN+ANE+LQ +F QH+F+ EQEEYN E I W+HIEF
Sbjct: 362 NSIGVLDIFGFENFDVNSFEQLCINFANENLQQFFVQHIFKLEQEEYNLEHINWQHIEFV 421
Query: 71 DNTLCLQLVEGKPNGLLCVLDDQANWSRG 99
DN L L+ KP ++ ++D+++ + +G
Sbjct: 422 DNQDALDLIAIKPLNIMSLIDEESKFPKG 450
>gnl|CDD|215687 pfam00063, Myosin_head, Myosin head (motor domain).
Length = 679
Score = 103 bits (260), Expect = 1e-26
Identities = 40/83 (48%), Positives = 55/83 (66%), Gaps = 1/83 (1%)
Query: 14 GVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DN 72
GV + + + FEQLCINYANE LQ +FN H+F+ EQEEY +EGI W I++ DN
Sbjct: 366 GVLDIYGFEIFEKNSFEQLCINYANEKLQQFFNHHMFKLEQEEYVREGIAWTFIDYGLDN 425
Query: 73 TLCLQLVEGKPNGLLCVLDDQAN 95
C+ L+E KP G+L +LD++
Sbjct: 426 QACIDLIEKKPPGILSLLDEECR 448
>gnl|CDD|238680 cd01384, MYSc_type_XI, Myosin motor domain, plant-specific type XI
myosin, involved in organelle transport. This catalytic
(head) domain has ATPase activity and belongs to the
larger group of P-loop NTPases. Myosins are
actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 674
Score = 102 bits (257), Expect = 4e-26
Identities = 38/64 (59%), Positives = 46/64 (71%)
Query: 29 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 88
FEQ CIN NE LQ +FNQHVF+ EQEEY KE I W +IEF DN L L+E KP G++
Sbjct: 385 FEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIA 444
Query: 89 VLDD 92
+LD+
Sbjct: 445 LLDE 448
>gnl|CDD|238676 cd01380, MYSc_type_V, Myosin motor domain, type V myosins. Myosins
V transport a variety of intracellular cargo
processively along actin filaments, such as membraneous
organelles and mRNA. This catalytic (head) domain has
ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 691
Score = 100 bits (251), Expect = 3e-25
Identities = 40/71 (56%), Positives = 50/71 (70%), Gaps = 1/71 (1%)
Query: 23 HLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGK 82
+ + FEQ CINYANE LQ FNQHVF+ EQEEY KEGI W I+F DN C+ L+E K
Sbjct: 380 TFEKNSFEQFCINYANEKLQQQFNQHVFKLEQEEYLKEGIEWTFIDFYDNQPCIDLIESK 439
Query: 83 PNGLLCVLDDQ 93
G+L +LD++
Sbjct: 440 L-GILSLLDEE 449
>gnl|CDD|238683 cd01387, MYSc_type_XV, Myosin motor domain, type XV myosins. In
vertebrates, myosin XV appears to be expressed in
sensory tissue and play a role in hearing. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Myosins are
actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 677
Score = 99.2 bits (247), Expect = 8e-25
Identities = 39/70 (55%), Positives = 50/70 (71%)
Query: 29 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 88
FEQLCINYANE+LQY FN+ VFQ EQEEY +E + W I F+DN + L+ KP G+L
Sbjct: 379 FEQLCINYANENLQYLFNKIVFQEEQEEYIREQLDWTEIAFADNQPVINLISLKPYGILR 438
Query: 89 VLDDQANWSR 98
+LDDQ + +
Sbjct: 439 ILDDQCCFPQ 448
>gnl|CDD|238679 cd01383, MYSc_type_VIII, Myosin motor domain, plant-specific type
VIII myosins, a subgroup which has been associated with
endocytosis, cytokinesis, cell-to-cell coupling and
gating at plasmodesmata. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 677
Score = 97.6 bits (243), Expect = 3e-24
Identities = 41/89 (46%), Positives = 57/89 (64%)
Query: 11 RSLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS 70
RS+ + + + FEQ CINYANE LQ +FN+H+F+ EQEEY ++GI W +EF
Sbjct: 365 RSISILDIYGFESFDKNSFEQFCINYANERLQQHFNRHLFKLEQEEYEEDGIDWTKVEFE 424
Query: 71 DNTLCLQLVEGKPNGLLCVLDDQANWSRG 99
DN CL L E KP GLL +LD+++ +
Sbjct: 425 DNQECLDLFEKKPLGLLSLLDEESTFPNA 453
>gnl|CDD|238675 cd01379, MYSc_type_III, Myosin motor domain, type III myosins.
Myosin III has been shown to play a role in the vision
process in insects and in hearing in mammals. Myosin
III, an unconventional myosin, does not form dimers.
This catalytic (head) domain has ATPase activity and
belongs to the larger group of P-loop NTPases. Myosins
are actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 653
Score = 89.5 bits (222), Expect = 2e-21
Identities = 43/96 (44%), Positives = 63/96 (65%), Gaps = 6/96 (6%)
Query: 4 QLDIGIHRSLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIR 63
QL++GI L +F ++ K + FEQLCIN ANE +QYYFNQH+F +EQ+EY EG+
Sbjct: 372 QLNVGI---LDIFG---FENFKKNSFEQLCINIANEQIQYYFNQHIFAWEQQEYLNEGVD 425
Query: 64 WRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANWSRG 99
R +E+ DN L + KP GLL +LD+++ + +
Sbjct: 426 ARLVEYEDNRPLLDMFLQKPLGLLALLDEESRFPQA 461
>gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton].
Length = 1463
Score = 88.6 bits (220), Expect = 5e-21
Identities = 39/67 (58%), Positives = 50/67 (74%), Gaps = 1/67 (1%)
Query: 29 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGK-PNGLL 87
FEQLCINY NE LQ +FNQH+F+ EQEEY KEGI W I++ DN C+ L+E K P G+L
Sbjct: 446 FEQLCINYTNEKLQQFFNQHMFKLEQEEYVKEGIEWSFIDYFDNQPCIDLIEKKNPLGIL 505
Query: 88 CVLDDQA 94
+LD++
Sbjct: 506 SLLDEEC 512
>gnl|CDD|238673 cd01377, MYSc_type_II, Myosin motor domain, type II myosins. Myosin
II mediates cortical contraction in cell motility, and
is the motor in smooth and skeletal muscle. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Myosins are
actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 693
Score = 86.9 bits (216), Expect = 1e-20
Identities = 35/66 (53%), Positives = 45/66 (68%), Gaps = 1/66 (1%)
Query: 29 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGKPNGLL 87
FEQLCINY NE LQ +FN H+F EQEEY +EGI W I+F D + L+E P G+L
Sbjct: 392 FEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWTFIDFGLDLQPTIDLIEKNPMGIL 451
Query: 88 CVLDDQ 93
+LD++
Sbjct: 452 SLLDEE 457
>gnl|CDD|238674 cd01378, MYSc_type_I, Myosin motor domain, type I myosins. Myosin I
generates movement at the leading edge in cell motility,
and class I myosins have been implicated in phagocytosis
and vesicle transport. Myosin I, an unconventional
myosin, does not form dimers. This catalytic (head)
domain has ATPase activity and belongs to the larger
group of P-loop NTPases. Myosins are actin-dependent
molecular motors that play important roles in muscle
contraction, cell motility, and organelle transport. The
head domain is a molecular motor, which utilizes ATP
hydrolysis to generate directed movement toward the plus
end along actin filaments. A cyclical interaction
between myosin and actin provides the driving force.
Rates of ATP hydrolysis and consequently the speed of
movement along actin filaments vary widely, from about
0.04 micrometer per second for myosin I to 4.5
micrometer per second for myosin II in skeletal muscle.
Myosin II moves in discrete steps about 5-10 nm long and
generates 1-5 piconewtons of force. Upon ATP binding,
the myosin head dissociates from an actin filament. ATP
hydrolysis causes the head to pivot and associate with a
new actin subunit. The release of Pi causes the head to
pivot and move the filament (power stroke). Release of
ADP completes the cycle.
Length = 674
Score = 85.3 bits (212), Expect = 4e-20
Identities = 33/65 (50%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 29 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGK-PNGLL 87
FEQ CINY NE LQ F + + EQEEY +EGI+W IE+ +N + L+EGK P G+
Sbjct: 384 FEQFCINYVNEKLQQIFIELTLKAEQEEYVREGIKWTPIEYFNNKIVCDLIEGKRPPGIF 443
Query: 88 CVLDD 92
+LDD
Sbjct: 444 SILDD 448
>gnl|CDD|238678 cd01382, MYSc_type_VI, Myosin motor domain, type VI myosins. Myosin
VI is a monomeric myosin, which moves towards the
minus-end of actin filaments, in contrast to most other
myosins. It has been implicated in endocytosis,
secretion, and cell migration. This catalytic (head)
domain has ATPase activity and belongs to the larger
group of P-loop NTPases. Myosins are actin-dependent
molecular motors that play important roles in muscle
contraction, cell motility, and organelle transport. The
head domain is a molecular motor, which utilizes ATP
hydrolysis to generate directed movement toward the
minus end along actin filaments. A cyclical interaction
between myosin and actin provides the driving force.
Rates of ATP hydrolysis and consequently the speed of
movement along actin filaments vary widely, from about
0.04 micrometer per second for myosin I to 4.5
micrometer per second for myosin II in skeletal muscle.
Myosin II moves in discrete steps about 5-10 nm long and
generates 1-5 piconewtons of force. Upon ATP binding,
the myosin head dissociates from an actin filament. ATP
hydrolysis causes the head to pivot and associate with a
new actin subunit. The release of Pi causes the head to
pivot and move the filament (power stroke). Release of
ADP completes the cycle.
Length = 717
Score = 81.4 bits (201), Expect = 1e-18
Identities = 30/66 (45%), Positives = 44/66 (66%)
Query: 29 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 88
FEQ CINY NE LQ +FN+ + + EQE Y +EG+ + + DN C+ L+E K NG+L
Sbjct: 415 FEQFCINYCNEKLQQFFNERILKEEQELYQREGLGVNEVHYVDNQDCIDLIEAKLNGILD 474
Query: 89 VLDDQA 94
+LD++
Sbjct: 475 ILDEEN 480
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 1096
Score = 58.9 bits (142), Expect = 9e-11
Identities = 25/40 (62%), Positives = 31/40 (77%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
+ + + EEEEE+EEEEE+EE+EEEEEEEEEEE EE
Sbjct: 853 DGGGGSDGGDSEEEEEEEEEEEEEEEEEEEEEEEEEENEE 892
Score = 57.7 bits (139), Expect = 2e-10
Identities = 27/47 (57%), Positives = 34/47 (72%), Gaps = 4/47 (8%)
Query: 113 KEKEEEDEDEEQ----EEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
K+ E+ + + EEE+EEEEE+EE+EEEEEEEEEEEEE EE
Sbjct: 846 KQDEKGVDGGGGSDGGDSEEEEEEEEEEEEEEEEEEEEEEEEEENEE 892
Score = 56.9 bits (137), Expect = 4e-10
Identities = 26/46 (56%), Positives = 32/46 (69%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
K EK + + E+EEEEE+EE+EEEEEEEEEEEEEEE +
Sbjct: 846 KQDEKGVDGGGGSDGGDSEEEEEEEEEEEEEEEEEEEEEEEEEENE 891
Score = 55.4 bits (133), Expect = 1e-09
Identities = 25/41 (60%), Positives = 33/41 (80%)
Query: 118 EDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
+ E+EE+EEEEE+EEEEE+EE+EEEEEE EE E ++R
Sbjct: 862 DSEEEEEEEEEEEEEEEEEEEEEEEEEENEEPLSLEWPETR 902
Score = 51.5 bits (123), Expect = 3e-08
Identities = 23/43 (53%), Positives = 31/43 (72%)
Query: 115 KEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
K++E + + + EEE+EE+EEEEEEEEEEEEEEEE+
Sbjct: 846 KQDEKGVDGGGGSDGGDSEEEEEEEEEEEEEEEEEEEEEEEEE 888
Score = 49.6 bits (118), Expect = 1e-07
Identities = 21/43 (48%), Positives = 32/43 (74%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
E +++++ + + + EE+EE+EEEEEEEEEEEEEEEE+
Sbjct: 844 EAKQDEKGVDGGGGSDGGDSEEEEEEEEEEEEEEEEEEEEEEE 886
Score = 44.6 bits (105), Expect = 6e-06
Identities = 21/48 (43%), Positives = 32/48 (66%), Gaps = 4/48 (8%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQE----EQEEEEEEEEEEEEEEEED 156
+E E++ E +++E+ + + E+EEEEEEEEEEEEEEEE+
Sbjct: 835 QELNAENQGEAKQDEKGVDGGGGSDGGDSEEEEEEEEEEEEEEEEEEE 882
Score = 37.3 bits (86), Expect = 0.002
Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 18/61 (29%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQ------------------EEEEEEEEEEEEEEEE 155
E + +D + + E E++ E Q E EEEEEEEEEEEEEEEE
Sbjct: 820 ETQADDTEVKDETGEQELNAENQGEAKQDEKGVDGGGGSDGGDSEEEEEEEEEEEEEEEE 879
Query: 156 D 156
+
Sbjct: 880 E 880
Score = 35.4 bits (81), Expect = 0.010
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
P E++ E E E + E +E + + E E +E E E E E E E+E
Sbjct: 686 PAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDE 729
Score = 35.0 bits (80), Expect = 0.012
Identities = 20/44 (45%), Positives = 25/44 (56%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+ KE + + E + EE E E E E E E+E E E EE EE ED
Sbjct: 700 EAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVED 743
Score = 35.0 bits (80), Expect = 0.012
Identities = 21/47 (44%), Positives = 26/47 (55%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
I+ KE + + E E +E E E E E E E E E E EE EE E+E
Sbjct: 699 IEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEG 745
Score = 35.0 bits (80), Expect = 0.013
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
++ E+E E E + +E + + E E EE E E E E E E+E E
Sbjct: 689 RKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGE 731
Score = 35.0 bits (80), Expect = 0.014
Identities = 20/48 (41%), Positives = 23/48 (47%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
E E E E E E E E EE E+ E E E E E + E E E D +
Sbjct: 715 VEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRK 762
Score = 34.6 bits (79), Expect = 0.018
Identities = 26/74 (35%), Positives = 33/74 (44%), Gaps = 31/74 (41%)
Query: 114 EKEEEDEDEEQEEEEEQ----EEEEEQEEQE---------------------------EE 142
E E ++DE + + E Q E ++E EQE EE
Sbjct: 806 ETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQDEKGVDGGGGSDGGDSEE 865
Query: 143 EEEEEEEEEEEEED 156
EEEEEEEEEEEEE+
Sbjct: 866 EEEEEEEEEEEEEE 879
Score = 34.2 bits (78), Expect = 0.023
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+K + E+E E Q E ++ E+ + + + EEEEEEEEEE+
Sbjct: 828 VKDETGEQELNAENQGEAKQDEKGVDGGGGSDGGDSEEEEEEEEEEE 874
Score = 33.8 bits (77), Expect = 0.030
Identities = 20/45 (44%), Positives = 25/45 (55%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
K + + E E EE E E E E E ++E E E EE EE E+E E
Sbjct: 702 KEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGE 746
Score = 33.0 bits (75), Expect = 0.056
Identities = 15/42 (35%), Positives = 26/42 (61%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
+E E+E E E + + E + E + +E + E E E E +E+E+E
Sbjct: 739 EEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDE 780
Score = 33.0 bits (75), Expect = 0.059
Identities = 14/46 (30%), Positives = 21/46 (45%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+E E E++ E E + E E + E E + E+E E E E
Sbjct: 658 ENGEESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKE 703
Score = 32.7 bits (74), Expect = 0.072
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 112 PKEKEEEDEDE-EQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
E EE E EQE E E + E E E + E + E+E E E E
Sbjct: 656 EGENGEESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKE 703
Score = 32.7 bits (74), Expect = 0.073
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+E E E E + E + + E E + E + E+E E E E +E
Sbjct: 659 NGEESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKE 703
Score = 32.7 bits (74), Expect = 0.077
Identities = 20/45 (44%), Positives = 25/45 (55%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
K + + EE E E + E E E+E E E EE EE E+E E E E
Sbjct: 706 HKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAE 750
Score = 32.3 bits (73), Expect = 0.095
Identities = 15/46 (32%), Positives = 22/46 (47%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+ + E + EE E EQE E E + + E E E E + E+E
Sbjct: 650 ERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPAERKGEQEG 695
Score = 32.3 bits (73), Expect = 0.10
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 115 KEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
K E + +E + E E + E E E + E EE EE E+E E +
Sbjct: 707 KGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGE 748
Score = 32.3 bits (73), Expect = 0.10
Identities = 19/42 (45%), Positives = 24/42 (57%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+ E E E+ E E E E E E++ E E EE EE E+E E E
Sbjct: 707 KGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGE 748
Score = 32.3 bits (73), Expect = 0.11
Identities = 18/41 (43%), Positives = 22/41 (53%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
E E E E E+ EE E E E E E + E E E + +E E E
Sbjct: 727 EDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHE 767
Score = 32.3 bits (73), Expect = 0.11
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
K + + E + E++ E+E E E E +E + + E E EE E E E
Sbjct: 676 KGENESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGE 720
Score = 32.3 bits (73), Expect = 0.12
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
E+E E E E +E + + E E E+ E E E E E E+E E E
Sbjct: 692 EQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIE 733
Score = 31.9 bits (72), Expect = 0.12
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
E+E E E + + E E + E + EQE E E E +E + + E
Sbjct: 667 AEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKEADHKGE 709
Score = 31.9 bits (72), Expect = 0.13
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
+ + E+E E E EE EE E+E E E + + E E E + +E E
Sbjct: 722 EAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETE 765
Score = 31.9 bits (72), Expect = 0.13
Identities = 19/42 (45%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 115 KEEEDEDE-EQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+E EDE E E E + E E E +++E E E E E E +E+E+E
Sbjct: 739 EEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDE 780
Score = 31.9 bits (72), Expect = 0.14
Identities = 15/40 (37%), Positives = 20/40 (50%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
E E+ E+ E E E EE + E+E E E + E E E
Sbjct: 643 ERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESE 682
Score = 31.9 bits (72), Expect = 0.14
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
P E E E+ +E E E++ E E + E E E E E + E+E + I
Sbjct: 652 PTEAEGENGEESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGEI 699
Score = 31.9 bits (72), Expect = 0.15
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+ + + E + E E E E + EQE + E E +E + + E E +
Sbjct: 668 EQEGETETKGENESEGEIPAERKGEQEGEGEIEAKEADHKGETEAE 713
Score = 31.5 bits (71), Expect = 0.16
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
K + E + + E + EQE E E E +E + + E E EE E E
Sbjct: 676 KGENESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVEHEG 719
Score = 31.5 bits (71), Expect = 0.17
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 117 EEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
E EDE + E E+ EE E E + E E + E E E + +++
Sbjct: 724 EGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEH 766
Score = 31.1 bits (70), Expect = 0.22
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
E E + E++ E E + +E + + + E EE E E E E E
Sbjct: 684 EIPAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGT 726
Score = 31.1 bits (70), Expect = 0.25
Identities = 19/42 (45%), Positives = 24/42 (57%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
E E E+ + E E E E E+E + E EE EE E+E E E E
Sbjct: 709 ETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAE 750
Score = 31.1 bits (70), Expect = 0.27
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+ K E + + E E + E+E E E + +E + + E E EE E
Sbjct: 674 ETKGENESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVE 716
Score = 31.1 bits (70), Expect = 0.29
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
E E+E E E + E E + E + + E+E E E E +E + +
Sbjct: 666 EAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKEADHK 707
Score = 30.7 bits (69), Expect = 0.33
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
E E +E + E+E + E + + E E E E + E+E E +
Sbjct: 653 TEAEGENGEESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGE 698
Score = 30.7 bits (69), Expect = 0.35
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
+E E E + E + E E E + ++E E E E +E + + E E +
Sbjct: 667 AEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEV 715
Score = 30.7 bits (69), Expect = 0.35
Identities = 16/40 (40%), Positives = 19/40 (47%)
Query: 115 KEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
EE E + E E EE + EQE E E + E E E E
Sbjct: 645 TGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGE 684
Score = 30.3 bits (68), Expect = 0.40
Identities = 15/44 (34%), Positives = 20/44 (45%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
+E E E E + EE E E++ E E + E E E E E
Sbjct: 645 TGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPAE 688
Score = 30.3 bits (68), Expect = 0.46
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
E E ++ D + E E E+ E E + E E E+E E E EE E
Sbjct: 698 EIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGE 739
Score = 30.3 bits (68), Expect = 0.52
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
E E E E E + E+E E E +E +E E+E E E E + E ++
Sbjct: 714 EVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETE 758
Score = 30.0 bits (67), Expect = 0.67
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
E+ E+ + E E E EE E ++E E E + E E E E
Sbjct: 643 ERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGE 684
Score = 30.0 bits (67), Expect = 0.69
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+E E E E + E E E E E E+ EE E+E E E E + +
Sbjct: 712 AEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHE 754
Score = 29.6 bits (66), Expect = 0.82
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
E+ E + E E EE E EQE + E + E E E E E
Sbjct: 647 EEGERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPAE 688
Score = 28.8 bits (64), Expect = 1.3
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
E E E +E +E E+E E E E + + E E + +E E E E ++
Sbjct: 729 EGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEA 772
Score = 28.8 bits (64), Expect = 1.6
Identities = 13/46 (28%), Positives = 21/46 (45%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
+E E E + E E+ E ++E E E + E E E E + +
Sbjct: 645 TGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPAERK 690
Score = 28.8 bits (64), Expect = 1.6
Identities = 13/49 (26%), Positives = 22/49 (44%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
+ + E +E + E + E E+ E E+E E E + E E + I
Sbjct: 637 EAEHTGERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGEI 685
Score = 28.4 bits (63), Expect = 1.8
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 117 EEDEDEEQEEEEE----QEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+EDEDE + + E + +E + + E E E E E++E E S
Sbjct: 775 KEDEDEGEIQAGEDGEMKGDEGAEGKVEHEGETEAGEKDEHEGQS 819
Score = 26.5 bits (58), Expect = 7.6
Identities = 11/41 (26%), Positives = 22/41 (53%)
Query: 115 KEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+ + E E + E E + +E+E E + + E+ E + +E E
Sbjct: 758 EGDRKETEHEGETEAEGKEDEDEGEIQAGEDGEMKGDEGAE 798
Score = 26.5 bits (58), Expect = 9.2
Identities = 15/44 (34%), Positives = 18/44 (40%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
K E E + EE E E E + EE E E+E E E
Sbjct: 632 KGDVAEAEHTGERTGEEGERPTEAEGENGEESGGEAEQEGETET 675
>gnl|CDD|240229 PTZ00014, PTZ00014, myosin-A; Provisional.
Length = 821
Score = 56.2 bits (136), Expect = 7e-10
Identities = 26/64 (40%), Positives = 36/64 (56%)
Query: 30 EQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCV 89
EQL IN NE LQ F VF+ E + Y EGI +E++ N + L+ GK +L +
Sbjct: 481 EQLFINITNEMLQKNFVDIVFERESKLYKDEGISTEELEYTSNESVIDLLCGKGKSVLSI 540
Query: 90 LDDQ 93
L+DQ
Sbjct: 541 LEDQ 544
>gnl|CDD|217503 pfam03344, Daxx, Daxx Family. The Daxx protein (also known as the
Fas-binding protein) is thought to play a role in
apoptosis, but precise role played by Daxx remains to be
determined. Daxx forms a complex with Axin.
Length = 715
Score = 49.5 bits (118), Expect = 1e-07
Identities = 28/46 (60%), Positives = 35/46 (76%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
P +E E+EE EEEE+EEEEE+EE++E EEEE E+EEEEEE
Sbjct: 432 PSMASQESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVE 477
Score = 49.1 bits (117), Expect = 2e-07
Identities = 28/49 (57%), Positives = 37/49 (75%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
++ EE+E E+EEEEE+EEEEE++E EEEE E+EEEEEE E D+
Sbjct: 434 MASQESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGS 482
Score = 47.2 bits (112), Expect = 9e-07
Identities = 24/44 (54%), Positives = 34/44 (77%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+EEE+E+EE+EEEE++ EEEE E++EEEEE E + EEE +
Sbjct: 444 SVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEME 487
Score = 46.8 bits (111), Expect = 1e-06
Identities = 24/43 (55%), Positives = 34/43 (79%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
E EE+E+EE+EEEEE++E EE+E ++EEEEEE E + EE+
Sbjct: 443 ESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEE 485
Score = 46.4 bits (110), Expect = 1e-06
Identities = 26/44 (59%), Positives = 35/44 (79%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
E+EEE+E+EE+EEE+E EEEE ++E+EEEE E + EEE E S
Sbjct: 446 EEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGS 489
Score = 46.4 bits (110), Expect = 1e-06
Identities = 25/48 (52%), Positives = 34/48 (70%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
+E+EEE+E+EE+EE+E +EEE E EE+EEE E + EEE E S
Sbjct: 444 SVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSE 491
Score = 46.1 bits (109), Expect = 2e-06
Identities = 27/43 (62%), Positives = 33/43 (76%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+ EEE+E+EE+EEEEEQE EEE+ E EEEEEE E + EEE
Sbjct: 443 ESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEE 485
Score = 44.9 bits (106), Expect = 5e-06
Identities = 23/44 (52%), Positives = 35/44 (79%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+E+E +E+EE+EEEEE+EE+E +EE+ E+EEEEEE E + +
Sbjct: 440 EEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSE 483
Score = 42.2 bits (99), Expect = 5e-05
Identities = 21/44 (47%), Positives = 32/44 (72%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
E+EEE+E+EE++E EE+E E+E+EE+E E + EEE E +
Sbjct: 449 EEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEG 492
Score = 39.9 bits (93), Expect = 3e-04
Identities = 23/44 (52%), Positives = 31/44 (70%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
E+EEE+E+E++ EEEE E+EEE+EE E + EEE E E D
Sbjct: 451 EEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGDG 494
Score = 38.7 bits (90), Expect = 6e-04
Identities = 19/46 (41%), Positives = 29/46 (63%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
+ +EEE EDEE+EEE E + E+E + E + + EE EE+ + R
Sbjct: 461 ESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGDGDGEEPEEDAERR 506
Score = 37.6 bits (87), Expect = 0.001
Identities = 19/46 (41%), Positives = 28/46 (60%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+ +E+E EDE+EE+E E + EEE E E + + EE EE+ E
Sbjct: 461 ESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGDGDGEEPEEDAERR 506
Score = 37.6 bits (87), Expect = 0.001
Identities = 22/43 (51%), Positives = 28/43 (65%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
E+EEE+E E +EEE E EEEEE+ E + EEE E E + D
Sbjct: 453 EEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGDGD 495
Score = 35.3 bits (81), Expect = 0.011
Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 9/53 (16%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEE---------EEEEEEEEEEDS 157
E+EE++ +EE+ E+EE+EEE E + EEE E EE EE+ E +S
Sbjct: 456 EEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGDGDGEEPEEDAERRNS 508
Score = 34.9 bits (80), Expect = 0.012
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
E E+E+E+EE E + EEE E + + + EE EE+ E
Sbjct: 466 EGEDEEEEEEVEADNGSEEEMEGSSEGDGDGEEPEEDAERRNSE 509
Score = 34.9 bits (80), Expect = 0.012
Identities = 17/49 (34%), Positives = 24/49 (48%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRIL 160
E EEE+E+ E + E+E E E + EE EE+ E E + I
Sbjct: 466 EGEDEEEEEEVEADNGSEEEMEGSSEGDGDGEEPEEDAERRNSEMAGIS 514
Score = 34.9 bits (80), Expect = 0.015
Identities = 22/45 (48%), Positives = 28/45 (62%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
K E +E +EEE +EE+EEEEEEEEEE+E EEE+
Sbjct: 422 SKASSTSGESPSMASQESEEEESVEEEEEEEEEEEEEEQESEEEE 466
>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated.
Length = 330
Score = 46.4 bits (111), Expect = 1e-06
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 115 KEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+++ DEE +E + + E+EEEEEEEEEEEE EE+
Sbjct: 279 ADKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320
Score = 44.9 bits (107), Expect = 4e-06
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
+K+ DE+ ++ + + +EE+EEEEEEEEEE EEE
Sbjct: 279 ADKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320
Score = 43.7 bits (104), Expect = 1e-05
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
+ ++E +E + Q E+EE+EEEEEEEEE EEE
Sbjct: 279 ADKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320
Score = 41.8 bits (99), Expect = 5e-05
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 117 EEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
++D +E+ +E + + +EEEEEEEEEEEEE E+
Sbjct: 280 DKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320
Score = 41.0 bits (97), Expect = 9e-05
Identities = 17/39 (43%), Positives = 24/39 (61%)
Query: 119 DEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+ + +EE ++ + + EEEEEEEEEEEEEE S
Sbjct: 279 ADKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPS 317
Score = 40.6 bits (96), Expect = 1e-04
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEE 152
+ K+ +E+ E + + EE+EE+EEEEEEEE EEE
Sbjct: 278 LADKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320
>gnl|CDD|220972 pfam11081, DUF2890, Protein of unknown function (DUF2890). This
family is conserved in dsDNA adenoviruses of
vertebrates. The function is not known.
Length = 172
Score = 45.3 bits (107), Expect = 2e-06
Identities = 24/44 (54%), Positives = 28/44 (63%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
P + EEED D + EE EE EEE E E +EE+EE EE EEE
Sbjct: 16 PTKDEEEDWDSQAEEVEEDEEEMEDWEDSLDEEDEEAEEVEEET 59
Score = 35.7 bits (82), Expect = 0.004
Identities = 16/37 (43%), Positives = 27/37 (72%)
Query: 120 EDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+DEE++ + + EE EE EE+ E+ E+ +EE+EE E+
Sbjct: 18 KDEEEDWDSQAEEVEEDEEEMEDWEDSLDEEDEEAEE 54
Score = 31.0 bits (70), Expect = 0.15
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
E+ EEDE+E ++ E+ +EE+E+ E+ EEE + S
Sbjct: 29 EEVEEDEEEMEDWEDSLDEEDEEAEEVEEETAASSKAPSSSSKSS 73
Score = 29.1 bits (65), Expect = 0.73
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 130 QEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
++EEE + + EE EE+EEE E+ EDS
Sbjct: 17 TKDEEEDWDSQAEEVEEDEEEMEDWEDS 44
Score = 28.7 bits (64), Expect = 0.89
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 124 QEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
++EEE + + +E +E+EEE E+ E+ +EED
Sbjct: 17 TKDEEEDWDSQAEEVEEDEEEMEDWEDSLDEEDE 50
Score = 28.0 bits (62), Expect = 2.0
Identities = 12/33 (36%), Positives = 23/33 (69%)
Query: 124 QEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
++EE++ + + EE EE+EEE E+ E+ +E+
Sbjct: 16 PTKDEEEDWDSQAEEVEEDEEEMEDWEDSLDEE 48
Score = 28.0 bits (62), Expect = 2.0
Identities = 17/48 (35%), Positives = 21/48 (43%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRILI 161
E EEE ED E +EE EE EE EE+ + + I I
Sbjct: 33 EDEEEMEDWEDSLDEEDEEAEEVEEETAASSKAPSSSSKSSSQETISI 80
Score = 27.2 bits (60), Expect = 3.7
Identities = 12/46 (26%), Positives = 24/46 (52%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
++ E+E ED ++ +EE+E+ EE E+E + + +E
Sbjct: 31 VEEDEEEMEDWEDSLDEEDEEAEEVEEETAASSKAPSSSSKSSSQE 76
>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457). This is
a family of uncharacterized proteins.
Length = 449
Score = 46.1 bits (109), Expect = 2e-06
Identities = 15/47 (31%), Positives = 40/47 (85%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
KE EEE +EE ++EE+ +++++++E +++++++E++E+E+++DS +
Sbjct: 43 KEAEEEAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDEDDDDSTL 89
Score = 42.3 bits (99), Expect = 4e-05
Identities = 14/48 (29%), Positives = 39/48 (81%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
I+ KE E+E E+E+++E++++++ +E E++++++++E++E+E+D
Sbjct: 38 IRKLGKEAEEEAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDEDDD 85
Score = 38.4 bits (89), Expect = 8e-04
Identities = 12/48 (25%), Positives = 36/48 (75%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
++ +E E+E EEE++ EE+++ ++ E+E++++++++E++E++
Sbjct: 36 NAIRKLGKEAEEEAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDED 83
Score = 37.7 bits (87), Expect = 0.002
Identities = 11/44 (25%), Positives = 33/44 (75%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
KE +E EEE +EE++++E+ +++++E+E+++++++++
Sbjct: 34 KENAIRKLGKEAEEEAMEEEDDDEEDDDDDDDEDEDDDDDDDDE 77
Score = 35.7 bits (82), Expect = 0.006
Identities = 12/48 (25%), Positives = 35/48 (72%)
Query: 109 MIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
M K + ++ E+E EE++++EE ++ +++E+E++++++++E+D
Sbjct: 32 MKKENAIRKLGKEAEEEAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDD 79
Score = 35.4 bits (81), Expect = 0.008
Identities = 10/44 (22%), Positives = 36/44 (81%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+EE+D++E+ +++++++E+++ ++ +E++E+E++++ +DS
Sbjct: 50 MEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDEDDDDSTLHDDS 93
Score = 35.0 bits (80), Expect = 0.013
Identities = 10/44 (22%), Positives = 35/44 (79%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
E+E++DE+++ ++++E E++++ ++ E++E+E++++ ++ S
Sbjct: 51 EEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDEDDDDSTLHDDSS 94
Score = 31.9 bits (72), Expect = 0.12
Identities = 8/45 (17%), Positives = 32/45 (71%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+E ++E++D++ ++E+E +++++ +E +E+E++++ ++
Sbjct: 52 EEDDDEEDDDDDDDEDEDDDDDDDDEDDEDEDDDDSTLHDDSSAD 96
Score = 26.5 bits (58), Expect = 8.0
Identities = 8/44 (18%), Positives = 30/44 (68%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+ +++DEDE+ +++++ E++E++++ + ++ ++ E D+
Sbjct: 60 DDDDDDEDEDDDDDDDDEDDEDEDDDDSTLHDDSSADDGNETDN 103
>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein.
Length = 529
Score = 46.3 bits (110), Expect = 2e-06
Identities = 25/52 (48%), Positives = 42/52 (80%)
Query: 108 WMIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
W+ K EKE DE+EE+E+EE++EEEE+ ++EEE +EEEE+EE++++ ++
Sbjct: 26 WVEKEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKV 77
Score = 34.0 bits (78), Expect = 0.029
Identities = 16/44 (36%), Positives = 30/44 (68%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
+ +EK+EE+E +EEE EEEE++E++++ ++ +E E E
Sbjct: 43 EKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWEL 86
Score = 33.2 bits (76), Expect = 0.051
Identities = 16/43 (37%), Positives = 33/43 (76%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
KE+++E+E++ ++EEE +EEEE+EE++++ ++ +E E E
Sbjct: 44 KEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWEL 86
Score = 32.4 bits (74), Expect = 0.092
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 119 DEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEE 150
DEDEE EEE+E+ E E E EE+ E+ + EE
Sbjct: 496 DEDEEVEEEDEEAEVETTEPAEEDAEDSKMEE 527
Score = 31.7 bits (72), Expect = 0.16
Identities = 15/48 (31%), Positives = 34/48 (70%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
K ++KEEE++ ++EEE ++EEE+E+++++ ++ +E E E ++
Sbjct: 44 KEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWELLNKTK 91
Score = 30.5 bits (69), Expect = 0.32
Identities = 12/43 (27%), Positives = 34/43 (79%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+++E+++E+E+ ++EE+ +EEE++E+++++ ++ +E E E
Sbjct: 43 EKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWE 85
Score = 29.4 bits (66), Expect = 0.78
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 109 MIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEE 148
MIK +EDE+ E+E+EE + E E E++ E+ + EE
Sbjct: 488 MIKLGLSIDEDEEVEEEDEEAEVETTEPAEEDAEDSKMEE 527
Score = 29.0 bits (65), Expect = 1.1
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 121 DEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEE 152
DE++E EEE EE E + + EE+ E+ + EE
Sbjct: 496 DEDEEVEEEDEEAEVETTEPAEEDAEDSKMEE 527
Score = 28.6 bits (64), Expect = 1.7
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 125 EEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+E+EE EEE+E+ E E E EE+ E+ + E
Sbjct: 496 DEDEEVEEEDEEAEVETTEPAEEDAEDSKME 526
Score = 28.2 bits (63), Expect = 1.9
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 125 EEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
E+EE +EE+EE E + E EE+ E+ + EE
Sbjct: 497 EDEEVEEEDEEAEVETTEPAEEDAEDSKMEE 527
Score = 27.8 bits (62), Expect = 3.1
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 131 EEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
E+EE +EE EE E E E EE+ EDS+
Sbjct: 497 EDEEVEEEDEEAEVETTEPAEEDAEDSK 524
>gnl|CDD|217829 pfam03985, Paf1, Paf1. Members of this family are components of
the RNA polymerase II associated Paf1 complex. The Paf1
complex functions during the elongation phase of
transcription in conjunction with Spt4-Spt5 and
Spt16-Pob3i.
Length = 431
Score = 45.9 bits (109), Expect = 2e-06
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+ E+EDE+EEQ +E +EEE E E+E + E+ E +
Sbjct: 367 FEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVG 413
Score = 45.5 bits (108), Expect = 3e-06
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
E+ +EDEDEE+E+ ++ EEEE E+ EEE + E+ E
Sbjct: 366 DFEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDV 412
Score = 44.7 bits (106), Expect = 5e-06
Identities = 20/47 (42%), Positives = 30/47 (63%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
P + EE DEDE++EEE+ +E EE+E ++ EEE + E+ E S
Sbjct: 364 PIDFEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSS 410
Score = 41.6 bits (98), Expect = 5e-05
Identities = 15/48 (31%), Positives = 29/48 (60%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
I +E +E++++EE++ +E EEEE ++ +EE + E+ E D
Sbjct: 365 IDFEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDV 412
Score = 41.6 bits (98), Expect = 6e-05
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
+E +++++E+EE+ E EEE+ E EEE + E+ E S
Sbjct: 365 IDFEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSD 411
Score = 41.6 bits (98), Expect = 7e-05
Identities = 13/47 (27%), Positives = 28/47 (59%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
+++E++E+E++ +E E+EE E+ EE+ + E+ E + S
Sbjct: 370 VDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDS 416
Score = 41.3 bits (97), Expect = 7e-05
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+ D +E E+E+E+EE+ E +EEE E+ EEE + ED
Sbjct: 363 DPIDFEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSRED 403
Score = 40.5 bits (95), Expect = 1e-04
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 6/53 (11%)
Query: 111 KPKEKEEEDED------EEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
P KE + D + + EE E+E+E+EEQ +E EEEE E+ EEE S
Sbjct: 346 NPSTKESKMRDKRRARLDPIDFEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGS 398
Score = 36.6 bits (85), Expect = 0.003
Identities = 12/47 (25%), Positives = 24/47 (51%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
+ +EEE ED E+E + +E+ + + + E + ++E DS
Sbjct: 383 DEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADKESASDSD 429
Score = 36.3 bits (84), Expect = 0.004
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
E++ DE EE+E E+ +EE + E E + + E
Sbjct: 378 EEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSES 418
Score = 34.7 bits (80), Expect = 0.014
Identities = 12/48 (25%), Positives = 23/48 (47%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+ +E+E ED +EE + E E + + E + ++E + DS
Sbjct: 383 DEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADKESASDSDS 430
Score = 33.6 bits (77), Expect = 0.029
Identities = 8/49 (16%), Positives = 21/49 (42%)
Query: 109 MIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+E+ E+ E+E + E+ E + + E + ++E + +
Sbjct: 383 DEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADKESASDSDSE 431
>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family. Emg1 and Nop14 are novel
proteins whose interaction is required for the
maturation of the 18S rRNA and for 40S ribosome
production.
Length = 809
Score = 45.8 bits (109), Expect = 3e-06
Identities = 19/43 (44%), Positives = 35/43 (81%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
E++D+D E+EEE+ +EE++E++E+ ++E++EEEEEEE +
Sbjct: 336 EDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEK 378
Score = 45.0 bits (107), Expect = 5e-06
Identities = 17/44 (38%), Positives = 34/44 (77%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
E +DEDEE ++++ +EEEE+ + +EEE+EE+E+ ++E+++
Sbjct: 327 EDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEE 370
Score = 44.2 bits (105), Expect = 9e-06
Identities = 20/43 (46%), Positives = 36/43 (83%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+++EED+D++ EEEEE + ++EE EE+E+ ++E++EEEEE+
Sbjct: 332 DEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEE 374
Score = 44.2 bits (105), Expect = 9e-06
Identities = 15/46 (32%), Positives = 35/46 (76%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
++EDE+++ ++ EE+EE+ + ++EE+EE+E+ ++E++EE+
Sbjct: 327 EDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEE 372
Score = 44.2 bits (105), Expect = 1e-05
Identities = 20/44 (45%), Positives = 37/44 (84%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
E EE+D+D+ +EEEE+ + +E+E++E+E+ ++E++EEEEEE+
Sbjct: 333 EDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEK 376
Score = 43.4 bits (103), Expect = 1e-05
Identities = 19/52 (36%), Positives = 37/52 (71%)
Query: 106 VFWMIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
F + + +E EEE+ED +E+EE ++++ +EE+E+ + +EEE+EE+E+
Sbjct: 313 NFGLGQGEEDEEEEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSD 364
Score = 43.4 bits (103), Expect = 2e-05
Identities = 18/42 (42%), Positives = 36/42 (85%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
E +++D +EE+E+ + +EEE++E+++ ++E++EEEEEEE+E
Sbjct: 336 EDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKE 377
Score = 41.5 bits (98), Expect = 8e-05
Identities = 17/48 (35%), Positives = 36/48 (75%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+ +E+EE+ D+E EE+++ + EEE+E+ + +EEE+EE+E+ +++
Sbjct: 320 EEDEEEEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDED 367
Score = 38.8 bits (91), Expect = 6e-04
Identities = 19/44 (43%), Positives = 37/44 (84%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+ EEE+ED + +EEE EE+E+ +++++EEEEEEE+E+++++ +
Sbjct: 341 DLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKKKKSA 384
Score = 38.8 bits (91), Expect = 7e-04
Identities = 18/45 (40%), Positives = 34/45 (75%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
+ EE+E++ +EE++EE+E + E++EEEEEEE+E++++ S
Sbjct: 340 DDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKKKKSA 384
Score = 38.4 bits (90), Expect = 0.001
Identities = 21/45 (46%), Positives = 35/45 (77%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
E+EEED D EEE+E++E+ + E+ EEEEEEE+E+++++ +S
Sbjct: 342 LEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKKKKSAES 386
Score = 36.1 bits (84), Expect = 0.005
Identities = 17/46 (36%), Positives = 34/46 (73%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
E++ + DEE++EE+E ++E+ EE+EEEE+E+++++ E S +
Sbjct: 346 EEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKKKKSAESTRSEL 391
Score = 35.7 bits (83), Expect = 0.006
Identities = 15/46 (32%), Positives = 30/46 (65%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+ ++ +D D+E E +++ Q E++EEEEE+ ++E+EE+D
Sbjct: 293 EDSKESADDLDDEFEPDDDDNFGLGQGEEDEEEEEDGVDDEDEEDD 338
Score = 35.7 bits (83), Expect = 0.007
Identities = 15/44 (34%), Positives = 30/44 (68%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
KE ++ +DE + ++++ + EE EEEEE+ ++E+EE++D
Sbjct: 296 KESADDLDDEFEPDDDDNFGLGQGEEDEEEEEDGVDDEDEEDDD 339
Score = 35.4 bits (82), Expect = 0.009
Identities = 16/44 (36%), Positives = 31/44 (70%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
E +++D + EE++EEEE+ + E+EE+++++ EEEEE+
Sbjct: 307 EPDDDDNFGLGQGEEDEEEEEDGVDDEDEEDDDDDLEEEEEDVD 350
Score = 35.4 bits (82), Expect = 0.009
Identities = 17/48 (35%), Positives = 35/48 (72%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRILI 161
E+E+ D +E+E+EE+++ ++E +E+EEEEE+E+++++ E L
Sbjct: 345 EEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKKKKSAESTRSELP 392
Score = 35.0 bits (81), Expect = 0.012
Identities = 15/44 (34%), Positives = 32/44 (72%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
++++ Q EE+E+EEE+ ++++EE+++++ EEEEE+ D
Sbjct: 308 PDDDDNFGLGQGEEDEEEEEDGVDDEDEEDDDDDLEEEEEDVDL 351
Score = 35.0 bits (81), Expect = 0.013
Identities = 17/46 (36%), Positives = 38/46 (82%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
+E+EE+ + ++EE+EE E+ ++++++EEEEEE+E+++++ E +R
Sbjct: 343 EEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKKKKSAESTR 388
Score = 33.8 bits (78), Expect = 0.028
Identities = 13/45 (28%), Positives = 30/45 (66%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
P + + + +E+EEE+E+ + E++E+++++ EEEEE+ +
Sbjct: 308 PDDDDNFGLGQGEEDEEEEEDGVDDEDEEDDDDDLEEEEEDVDLS 352
Score = 33.0 bits (76), Expect = 0.048
Identities = 14/45 (31%), Positives = 27/45 (60%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+E +E D+ +E E +++ Q EE+EEEEE+ ++E++
Sbjct: 292 EEDSKESADDLDDEFEPDDDDNFGLGQGEEDEEEEEDGVDDEDEE 336
Score = 32.3 bits (74), Expect = 0.11
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 5/43 (11%)
Query: 120 EDEEQEEEEEQEEEEEQE-----EQEEEEEEEEEEEEEEEEDS 157
E+E +EE E+ ++ E E EEE++EEEE+ +E +D
Sbjct: 260 EEELAKEEAERLKKLEAERLRRMRGEEEDDEEEEDSKESADDL 302
Score = 31.5 bits (72), Expect = 0.19
Identities = 13/44 (29%), Positives = 27/44 (61%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
E+EE+ ++ + ++E E +++ + EE+EEEEE+ +D
Sbjct: 290 EEEEDSKESADDLDDEFEPDDDDNFGLGQGEEDEEEEEDGVDDE 333
Score = 31.1 bits (71), Expect = 0.26
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
EEE EE E ++ E E + + EEE++EEEE+ +E D
Sbjct: 260 EEELAKEEAERLKKLEAERLRRMRGEEEDDEEEEDSKESAD 300
Score = 29.2 bits (66), Expect = 0.94
Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 4/38 (10%)
Query: 126 EEEEQEEEEEQEEQEEEEE----EEEEEEEEEEEDSRI 159
EEE +EE E+ ++ E E EEE++EEEEDS+
Sbjct: 260 EEELAKEEAERLKKLEAERLRRMRGEEEDDEEEEDSKE 297
Score = 28.8 bits (65), Expect = 1.3
Identities = 9/37 (24%), Positives = 21/37 (56%)
Query: 119 DEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
D+D+ +++ +++ E++EE+EEE+ E
Sbjct: 134 DDDDFDDDDLGDLASDDRAAHFGGGEDDEEDEEEQPE 170
Score = 28.0 bits (63), Expect = 2.3
Identities = 14/35 (40%), Positives = 27/35 (77%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEE 147
+++E+ED D+E +EEEE+EE+E+++++ E E
Sbjct: 356 EDEEDEDSDDEDDEEEEEEEKEKKKKKSAESTRSE 390
Score = 28.0 bits (63), Expect = 2.6
Identities = 12/44 (27%), Positives = 29/44 (65%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
E+E+++E+E+ +E + ++E + + ++ + EE+EEEE+
Sbjct: 285 EEEDDEEEEDSKESADDLDDEFEPDDDDNFGLGQGEEDEEEEED 328
Score = 28.0 bits (63), Expect = 2.8
Identities = 9/40 (22%), Positives = 22/40 (55%)
Query: 119 DEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
D+ ++ + + ++ E++EE+EEE+ E + S+
Sbjct: 136 DDFDDDDLGDLASDDRAAHFGGGEDDEEDEEEQPERKKSK 175
Score = 28.0 bits (63), Expect = 2.9
Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 3/44 (6%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEE---EEEEEEEEEEEEED 156
EE+DE+EE +E + ++E E +++ + EE+EEEEE+
Sbjct: 286 EEDDEEEEDSKESADDLDDEFEPDDDDNFGLGQGEEDEEEEEDG 329
Score = 26.9 bits (60), Expect = 5.9
Identities = 15/37 (40%), Positives = 29/37 (78%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEE 149
+E++EEDED + E++EE+EEEE+++++++ E E
Sbjct: 354 EEEDEEDEDSDDEDDEEEEEEEKEKKKKKSAESTRSE 390
Score = 26.9 bits (60), Expect = 6.7
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEE 149
+ +D+D +++ E +EE+EEE+ E
Sbjct: 137 DFDDDDLGDLASDDRAAHFGGGEDDEEDEEEQPE 170
>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional.
Length = 584
Score = 45.0 bits (107), Expect = 4e-06
Identities = 9/40 (22%), Positives = 20/40 (50%)
Query: 117 EEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+ E+E E+ ++ E+EEE+++ E+ E+
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299
Score = 44.2 bits (105), Expect = 9e-06
Identities = 10/40 (25%), Positives = 19/40 (47%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
EE+ E++ + E+EEE+++ E+ EE
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299
Score = 43.5 bits (103), Expect = 2e-05
Identities = 8/41 (19%), Positives = 22/41 (53%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEE 152
P + +E+ +++++ E++EE+++ E+ EE
Sbjct: 259 PAPPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299
Score = 41.5 bits (98), Expect = 7e-05
Identities = 10/40 (25%), Positives = 20/40 (50%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
+ E+E E++++ E EEE+++ E+ EE
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299
Score = 39.2 bits (92), Expect = 4e-04
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 124 QEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+ EEE E++++ E+EEE++D+
Sbjct: 259 PAPPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDA 292
Score = 37.7 bits (88), Expect = 0.001
Identities = 8/43 (18%), Positives = 21/43 (48%)
Query: 109 MIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEE 151
+ + E+E E +++ ++E+E+++ E+ EE
Sbjct: 257 RLPAPPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299
>gnl|CDD|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2
subunit 1; Provisional.
Length = 319
Score = 45.0 bits (107), Expect = 4e-06
Identities = 20/44 (45%), Positives = 35/44 (79%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
E++ E+ E+ EEEEE+++ E E+++EE+E+EEEEE+++E D
Sbjct: 275 DEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGD 318
Score = 42.3 bits (100), Expect = 4e-05
Identities = 22/43 (51%), Positives = 34/43 (79%)
Query: 115 KEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+EED +E E+ EE+EEE++ E E+E+EE+E+EEEEE++D
Sbjct: 274 GDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDE 316
Score = 41.2 bits (97), Expect = 8e-05
Identities = 18/45 (40%), Positives = 34/45 (75%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
EE+ E+ ++ EEE+EE++ E ++E+EE+E+EEEEE++++
Sbjct: 274 GDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGD 318
Score = 40.8 bits (96), Expect = 1e-04
Identities = 19/43 (44%), Positives = 31/43 (72%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
E EE ++ +EEEEE + E ++E EE+E+EEEEE+++E +
Sbjct: 277 EDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319
Score = 38.5 bits (90), Expect = 6e-04
Identities = 16/42 (38%), Positives = 33/42 (78%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
+E ++ EE+EEE++ E E+++E++E+EEEEE+++E ++
Sbjct: 278 DLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319
Score = 33.9 bits (78), Expect = 0.024
Identities = 16/35 (45%), Positives = 29/35 (82%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEE 145
K +E+EEED+ E E+E+E++E+EE+EE ++E ++
Sbjct: 285 KAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319
Score = 33.5 bits (77), Expect = 0.033
Identities = 13/38 (34%), Positives = 32/38 (84%)
Query: 109 MIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEE 146
+++ E+EEE++D + E+E++E+E+E+EE++++E ++
Sbjct: 282 LLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit;
Provisional.
Length = 482
Score = 44.5 bits (106), Expect = 6e-06
Identities = 22/70 (31%), Positives = 46/70 (65%), Gaps = 3/70 (4%)
Query: 91 DDQANWSRGNPMVSCVFWMI---KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEE 147
+++ + G+ + I K++EEE ++++++ +++EEE+EE++E++EEE+
Sbjct: 396 EEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEK 455
Query: 148 EEEEEEEEDS 157
EEEEEE E+
Sbjct: 456 EEEEEEAEEE 465
Score = 43.4 bits (103), Expect = 1e-05
Identities = 25/46 (54%), Positives = 40/46 (86%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+ KEK+++ +++EEEE+EE+E++EE++EEEEEE EEE+EEEE+
Sbjct: 426 EKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEE 471
Score = 43.0 bits (102), Expect = 2e-05
Identities = 24/45 (53%), Positives = 37/45 (82%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
K+K + +E+EEEEE+E++EE++E+EEEE EEE+EEEEE++
Sbjct: 431 KKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKKK 475
Score = 43.0 bits (102), Expect = 2e-05
Identities = 20/44 (45%), Positives = 37/44 (84%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+E+++E + + ++++EEEEE++E++EEE+EEEEEE EEE++
Sbjct: 424 EEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKE 467
Score = 43.0 bits (102), Expect = 2e-05
Identities = 24/48 (50%), Positives = 39/48 (81%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
K K+K+ +++EEEEE++E++E+E++EEEEE EEE+EEEEE+ +
Sbjct: 428 KEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKKK 475
Score = 42.6 bits (101), Expect = 2e-05
Identities = 22/46 (47%), Positives = 39/46 (84%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+ K+++++ +++EEE+EEE+E++E+E+EEEEEE EEE+EEE+
Sbjct: 425 EEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEE 470
Score = 42.6 bits (101), Expect = 3e-05
Identities = 21/49 (42%), Positives = 39/49 (79%)
Query: 109 MIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+ ++KE++ + +++EE+EEEE+++++EE+EEEEEE EEE+EE+
Sbjct: 422 KREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEE 470
Score = 41.8 bits (99), Expect = 5e-05
Identities = 17/49 (34%), Positives = 35/49 (71%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
K +K E ++++EEE+++++++ +++EEEEEEE+E++EEE
Sbjct: 410 KKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEE 458
Score = 41.1 bits (97), Expect = 1e-04
Identities = 22/44 (50%), Positives = 35/44 (79%)
Query: 109 MIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEE 152
K ++ E+EE+EE+E++EEE+E+EE+E EEE+EEEEE++
Sbjct: 430 KKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKK 473
Score = 39.5 bits (93), Expect = 3e-04
Identities = 22/45 (48%), Positives = 38/45 (84%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
K + ++EE+EEE+E++EEE++EE+EE EEE+EEEEE++++ +
Sbjct: 433 KAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKKKQA 477
Score = 38.7 bits (91), Expect = 6e-04
Identities = 16/49 (32%), Positives = 35/49 (71%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
K+ ++ E E++ EEE++E++++ +++EEEEEEE+E++E+ +
Sbjct: 407 KATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEK 455
>gnl|CDD|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit
Rpc31. RNA polymerase III contains seventeen subunits
in yeasts and in human cells. Twelve of these are akin
to RNA polymerase I or II and the other five are RNA pol
III-specific, and form the functionally distinct groups
(i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31,
Rpc34 and Rpc82 form a cluster of enzyme-specific
subunits that contribute to transcription initiation in
S.cerevisiae and H.sapiens. There is evidence that these
subunits are anchored at or near the N-terminal Zn-fold
of Rpc1, itself prolonged by a highly conserved but RNA
polymerase III-specific domain.
Length = 221
Score = 43.6 bits (103), Expect = 8e-06
Identities = 19/44 (43%), Positives = 32/44 (72%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
K E + +E E E+ EE+E+ EE+EEEEEEE+E+ +++++D
Sbjct: 152 KLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEEDEDFDDDDDD 195
Score = 43.2 bits (102), Expect = 1e-05
Identities = 17/43 (39%), Positives = 37/43 (86%)
Query: 109 MIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEE 151
M++ K KE E ED ++E+E+++EEEEE+EE++E+ ++++++++
Sbjct: 155 MLEKKLKELEAEDVDEEDEKDEEEEEEEEEEDEDFDDDDDDDD 197
Score = 42.4 bits (100), Expect = 2e-05
Identities = 16/47 (34%), Positives = 37/47 (78%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
K E++ ++ E E+ +E++E++E+EE+EEEEE+E+ +++++++D
Sbjct: 151 EKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEEDEDFDDDDDDDD 197
Score = 42.0 bits (99), Expect = 3e-05
Identities = 22/44 (50%), Positives = 33/44 (75%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+EEED DE+ E++ +E E E+ +EE+E++EEEEEEEEE+
Sbjct: 142 FTEEEEDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEE 185
Score = 42.0 bits (99), Expect = 4e-05
Identities = 19/47 (40%), Positives = 32/47 (68%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
EK E + +E E E +EE+++++EEEEEEEEE+E+ +++D
Sbjct: 147 EDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEEDEDFDDDD 193
Score = 41.7 bits (98), Expect = 4e-05
Identities = 18/44 (40%), Positives = 38/44 (86%), Gaps = 1/44 (2%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
++K +E E E+ +EE+E++EEEE+EE EEE+E+ +++++++++D
Sbjct: 157 EKKLKELEAEDVDEEDEKDEEEEEEE-EEEDEDFDDDDDDDDDD 199
Score = 34.3 bits (79), Expect = 0.015
Identities = 16/48 (33%), Positives = 31/48 (64%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
K K +E+E+ +E+ E++ +E + E+ +EE+E++EEEEE+
Sbjct: 135 FKRKVGLFTEEEEDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEEEE 182
Score = 33.6 bits (77), Expect = 0.026
Identities = 15/47 (31%), Positives = 30/47 (63%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
K K K +EE++ +E+ E++ ++ E E+ +EE+E++EEE+
Sbjct: 134 KFKRKVGLFTEEEEDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEE 180
Score = 28.6 bits (64), Expect = 1.2
Identities = 12/48 (25%), Positives = 29/48 (60%)
Query: 109 MIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+ K K + E+EE+ +++ +++ +E E E+ +EE+E++E+
Sbjct: 130 LALSKFKRKVGLFTEEEEDIDEKLSMLEKKLKELEAEDVDEEDEKDEE 177
>gnl|CDD|217783 pfam03896, TRAP_alpha, Translocon-associated protein (TRAP), alpha
subunit. The alpha-subunit of the TRAP complex (TRAP
alpha) is a single-spanning membrane protein of the
endoplasmic reticulum (ER) which is found in proximity
of nascent polypeptide chains translocating across the
membrane.
Length = 281
Score = 42.8 bits (101), Expect = 2e-05
Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 101 PMVSCVFWMIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
P V F K +D E++E E++ +E+E++E EE+E E EEEE+E+
Sbjct: 15 PAVLLTFGNGKGPFASAQDLTEDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEE 70
Score = 39.0 bits (91), Expect = 5e-04
Identities = 18/53 (33%), Positives = 30/53 (56%)
Query: 97 SRGNPMVSCVFWMIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEE 149
+ GN +++E ED+ +++EE+E EE++ E EEEE+EE E
Sbjct: 20 TFGNGKGPFASAQDLTEDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGE 72
Score = 37.8 bits (88), Expect = 0.001
Identities = 18/36 (50%), Positives = 25/36 (69%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEE 151
+EE ED+ +E+EE E E++E E EEEE+EE E
Sbjct: 37 DEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGE 72
Score = 37.1 bits (86), Expect = 0.002
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEE 150
E EE ++D E+EE++ EE E + EEEE+EE E
Sbjct: 36 EDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGE 72
Score = 30.1 bits (68), Expect = 0.48
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 127 EEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
++ E+EE E+ +E+EE+E EE+E+
Sbjct: 31 AQDLTEDEEAEDDVVDEDEEDEAVVEEDENE 61
Score = 29.0 bits (65), Expect = 0.89
Identities = 10/32 (31%), Positives = 21/32 (65%)
Query: 126 EEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
++ E+EE +++ +E+EE+E EE+E +
Sbjct: 31 AQDLTEDEEAEDDVVDEDEEDEAVVEEDENEL 62
>gnl|CDD|185603 PTZ00415, PTZ00415, transmission-blocking target antigen s230;
Provisional.
Length = 2849
Score = 43.1 bits (101), Expect = 2e-05
Identities = 21/51 (41%), Positives = 38/51 (74%), Gaps = 4/51 (7%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEE----EEEEEEEEEEED 156
+ P++ D+D+E E+E++ +EE+++EE+EEEEE ++E+EE+E ED
Sbjct: 145 MSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDEGGED 195
Score = 41.6 bits (97), Expect = 7e-05
Identities = 17/39 (43%), Positives = 26/39 (66%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
EED + ++E+E E+ ++EE++EEEEEEEEE
Sbjct: 141 AEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEE 179
Score = 41.2 bits (96), Expect = 9e-05
Identities = 21/46 (45%), Positives = 35/46 (76%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
E E+ED+D+E+++EEE+EEEEE + ++E+EE+E E+ E S +
Sbjct: 158 EDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDEGGEDFTYEKSEV 203
Score = 40.0 bits (93), Expect = 3e-04
Identities = 18/49 (36%), Positives = 34/49 (69%), Gaps = 6/49 (12%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEE------EEEED 156
E++ D ++++++E+E+ +++E++EEEEEEEEE E+EED
Sbjct: 142 EEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEED 190
Score = 39.6 bits (92), Expect = 4e-04
Identities = 14/39 (35%), Positives = 29/39 (74%)
Query: 118 EDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+ED + ++++E E++++++EE++EEEEEEEE+
Sbjct: 141 AEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEE 179
Score = 38.5 bits (89), Expect = 8e-04
Identities = 16/45 (35%), Positives = 37/45 (82%)
Query: 108 WMIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEE 152
++I +++E+++D+++E++EE+EEEEE+ + ++E+EE+E E+
Sbjct: 151 FVIDDDDEDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDEGGED 195
Score = 38.1 bits (88), Expect = 0.001
Identities = 13/51 (25%), Positives = 32/51 (62%)
Query: 109 MIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
+I + + +E+ + +++ E+++E++++EE++EEEEEE+ I
Sbjct: 130 IIIKRRRARHLAEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEEI 180
Score = 37.3 bits (86), Expect = 0.002
Identities = 19/43 (44%), Positives = 33/43 (76%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
++++E+D+DEE +EEEE+EEEE + +E+EE+E E+ E+
Sbjct: 158 EDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDEGGEDFTYEK 200
Score = 36.6 bits (84), Expect = 0.004
Identities = 15/48 (31%), Positives = 28/48 (58%)
Query: 109 MIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
MI K + EE + ++ +E E+E++++EE++EEEEE+
Sbjct: 129 MIIIKRRRARHLAEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEE 176
Score = 32.3 bits (73), Expect = 0.098
Identities = 18/43 (41%), Positives = 30/43 (69%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
E ++++ED+E+EEEEE+E + +E EE+E E+ E+ E D
Sbjct: 162 EDDDDEEDDEEEEEEEEEIKGFDDEDEEDEGGEDFTYEKSEVD 204
Score = 31.6 bits (71), Expect = 0.21
Identities = 15/44 (34%), Positives = 31/44 (70%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+ ++E++DEE+EEEEE+ + + E++E+E E+ E+ E + +
Sbjct: 163 DDDDEEDDEEEEEEEEEIKGFDDEDEEDEGGEDFTYEKSEVDKT 206
>gnl|CDD|148051 pfam06213, CobT, Cobalamin biosynthesis protein CobT. This family
consists of several bacterial cobalamin biosynthesis
(CobT) proteins. CobT is involved in the transformation
of precorrin-3 into cobyrinic acid.
Length = 282
Score = 42.9 bits (101), Expect = 2e-05
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+ E+ED+ +E E++++ EEEE E+ + EE E +
Sbjct: 223 DNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSEEMESGE 265
Score = 41.7 bits (98), Expect = 5e-05
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
++ EDED+ +E+E++ + EEE+ + E+ + EE E
Sbjct: 219 ADSEDNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSEEMESG 264
Score = 41.0 bits (96), Expect = 9e-05
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
E E D E E+E+ +E+E ++Q EEEE + E+ D+
Sbjct: 215 EPESADSEDNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDA 256
Score = 39.0 bits (91), Expect = 4e-04
Identities = 11/46 (23%), Positives = 25/46 (54%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
E E++ +++E +++ E+EE + E+ + EE E E ++
Sbjct: 223 DNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSEEMESGEMEA 268
Score = 39.0 bits (91), Expect = 4e-04
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Query: 89 VLDDQANWSRGNPMVSCVFWMIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEE 148
+DDQ ++R V + E+ +E E + ++ E+E + +E+E++++ E
Sbjct: 188 CVDDQQAFAR-------VVRDMLSSMDMAEELGDEPESADSEDNEDEDDPKEDEDDDQGE 240
Query: 149 EEEEEEEDS 157
EEE DS
Sbjct: 241 EEESGSSDS 249
Score = 38.3 bits (89), Expect = 7e-04
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
KE+ED+D+ +EEE + ++ EE E E E E +
Sbjct: 230 PKEDEDDDQGEEEESGSSDSLSEDSDASSEEMESGEMEAAEASA 273
Score = 37.9 bits (88), Expect = 0.001
Identities = 9/47 (19%), Positives = 28/47 (59%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+P+ + ED ++E + +E++++++ +EE+ + E+ + E+
Sbjct: 215 EPESADSEDNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSEEM 261
Score = 35.2 bits (81), Expect = 0.009
Identities = 16/45 (35%), Positives = 22/45 (48%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
PKE E++D+ EE+E E+ + EE E E E E D
Sbjct: 230 PKEDEDDDQGEEEESGSSDSLSEDSDASSEEMESGEMEAAEASAD 274
Score = 34.4 bits (79), Expect = 0.016
Identities = 11/45 (24%), Positives = 26/45 (57%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
E E D ++ ++E++ +E+E++ + +EEE + E+ + S
Sbjct: 215 EPESADSEDNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSE 259
Score = 31.7 bits (72), Expect = 0.11
Identities = 10/42 (23%), Positives = 18/42 (42%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
E+E D E+ + EE E E E E ++ + ++
Sbjct: 241 EEESGSSDSLSEDSDASSEEMESGEMEAAEASADDTPDSDDA 282
>gnl|CDD|219900 pfam08553, VID27, VID27 cytoplasmic protein. This is a family of
fungal and plant proteins and contains many hypothetical
proteins. VID27 is a cytoplasmic protein that plays a
potential role in vacuolar protein degradation.
Length = 794
Score = 42.0 bits (99), Expect = 4e-05
Identities = 19/42 (45%), Positives = 28/42 (66%)
Query: 117 EEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
E+ E +EEEE EEEEE+E+++E +E ++EE EED
Sbjct: 382 EDANTERDDEEEEDEEEEEEEDEDEGPSKEHSDDEEFEEDDV 423
Score = 42.0 bits (99), Expect = 5e-05
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Query: 106 VFWMIKPKEKEEEDEDEEQE------EEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
W K+K + ++ EQ+ E E+ + + EEEE+EEEEEEE+E+E
Sbjct: 351 ALWETLNKQKWTKAKETEQDYILDAFSALEIEDANTERDDEEEEDEEEEEEEDEDEGPS 409
Score = 41.7 bits (98), Expect = 7e-05
Identities = 19/45 (42%), Positives = 32/45 (71%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+ ++ E +DEE+E+EEE+EEE+E E +E ++EE EE++ E
Sbjct: 380 EIEDANTERDDEEEEDEEEEEEEDEDEGPSKEHSDDEEFEEDDVE 424
Score = 40.9 bits (96), Expect = 1e-04
Identities = 16/43 (37%), Positives = 29/43 (67%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
+ E +++EEE+E+EEEEE E++ +E ++EE EE++
Sbjct: 383 DANTERDDEEEEDEEEEEEEDEDEGPSKEHSDDEEFEEDDVES 425
Score = 40.5 bits (95), Expect = 1e-04
Identities = 19/43 (44%), Positives = 31/43 (72%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
E ED + E+++EEE++EEEE+EE E+E +E ++EE E+
Sbjct: 380 EIEDANTERDDEEEEDEEEEEEEDEDEGPSKEHSDDEEFEEDD 422
Score = 40.5 bits (95), Expect = 2e-04
Identities = 20/44 (45%), Positives = 34/44 (77%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
E+++E+E++E+EEEEE E+E +E ++EE EE++ E + EDS
Sbjct: 387 ERDDEEEEDEEEEEEEDEDEGPSKEHSDDEEFEEDDVESKYEDS 430
Score = 40.5 bits (95), Expect = 2e-04
Identities = 18/45 (40%), Positives = 33/45 (73%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
E + D+E+EE+EE+EEEE+++E +E ++EE EE++ +S+
Sbjct: 382 EDANTERDDEEEEDEEEEEEEDEDEGPSKEHSDDEEFEEDDVESK 426
Score = 40.1 bits (94), Expect = 2e-04
Identities = 19/44 (43%), Positives = 31/44 (70%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
E E+ + + + EEEE++EEEEE++E E +E ++EE EE+D
Sbjct: 380 EIEDANTERDDEEEEDEEEEEEEDEDEGPSKEHSDDEEFEEDDV 423
Score = 39.3 bits (92), Expect = 4e-04
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 118 EDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+ E E +EEEE EE+EEEE+E+E +E +D
Sbjct: 377 SALEIEDANTERDDEEEEDEEEEEEEDEDEGPSKEHSDDE 416
Score = 39.0 bits (91), Expect = 5e-04
Identities = 20/48 (41%), Positives = 32/48 (66%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
I+ E +DE+EE EEEEE+E+E+E +E ++EE EE++ E +
Sbjct: 381 IEDANTERDDEEEEDEEEEEEEDEDEGPSKEHSDDEEFEEDDVESKYE 428
Score = 37.0 bits (86), Expect = 0.002
Identities = 17/41 (41%), Positives = 30/41 (73%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
++EEEDE+EE+EE+E++ +E + EE EE++ E + E+
Sbjct: 389 DDEEEEDEEEEEEEDEDEGPSKEHSDDEEFEEDDVESKYED 429
Score = 35.5 bits (82), Expect = 0.008
Identities = 14/44 (31%), Positives = 32/44 (72%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+ +++E+E++EEEEE++E+E ++ ++EE EE++ E + +
Sbjct: 386 TERDDEEEEDEEEEEEEDEDEGPSKEHSDDEEFEEDDVESKYED 429
Score = 35.1 bits (81), Expect = 0.012
Identities = 16/45 (35%), Positives = 33/45 (73%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
E+EE++E+EE+E+E+E +E +++E EE++ E + E+ + +S
Sbjct: 390 DEEEEDEEEEEEEDEDEGPSKEHSDDEEFEEDDVESKYEDSDGNS 434
Score = 34.7 bits (80), Expect = 0.016
Identities = 14/41 (34%), Positives = 29/41 (70%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEE 151
+E+E+E+E+EE++E+E +E +E+ EE++ E + E+
Sbjct: 389 DDEEEEDEEEEEEEDEDEGPSKEHSDDEEFEEDDVESKYED 429
Score = 32.8 bits (75), Expect = 0.063
Identities = 15/41 (36%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEE 150
+ +E EEE+E+E+ E+E +E + EE EE++ E + E+
Sbjct: 390 DEEEEDEEEEEEED-EDEGPSKEHSDDEEFEEDDVESKYED 429
>gnl|CDD|148682 pfam07222, PBP_sp32, Proacrosin binding protein sp32. This family
consists of several mammalian specific proacrosin
binding protein sp32 sequences. sp32 is a sperm specific
protein which is known to bind with with 55- and 53-kDa
proacrosins and the 49-kDa acrosin intermediate. The
exact function of sp32 is unclear, it is thought however
that the binding of sp32 to proacrosin may be involved
in packaging the acrosin zymogen into the acrosomal
matrix.
Length = 243
Score = 42.0 bits (98), Expect = 4e-05
Identities = 20/44 (45%), Positives = 32/44 (72%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
KPK+++ + +E +E + EE++ QEEQEEEE EEE ++EE +
Sbjct: 196 KPKQEQLLSKLQEYLQEHKTEEKQPQEEQEEEEVEEEAKQEEGQ 239
Score = 37.7 bits (87), Expect = 0.001
Identities = 20/43 (46%), Positives = 31/43 (72%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
PK K+E+ + QE +E + EE+Q ++E+EEEE EEE ++EE
Sbjct: 195 PKPKQEQLLSKLQEYLQEHKTEEKQPQEEQEEEEVEEEAKQEE 237
Score = 29.2 bits (65), Expect = 0.86
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 115 KEEEDEDEEQEEEEEQEEEEEQEEQEEEEE 144
K EE + +E++EEEE EEE +QEE + ++
Sbjct: 214 KTEEKQPQEEQEEEEVEEEAKQEEGQGTDD 243
Score = 28.9 bits (64), Expect = 0.99
Identities = 11/47 (23%), Positives = 25/47 (53%)
Query: 109 MIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+ + + ++E+ + +E +E + EE++ +EE+EEEE
Sbjct: 183 SLSLGGSVQVKAPKPKQEQLLSKLQEYLQEHKTEEKQPQEEQEEEEV 229
Score = 28.5 bits (63), Expect = 1.3
Identities = 11/35 (31%), Positives = 24/35 (68%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEE 146
++ + +E + QEE+EE+E EEE +++E + ++
Sbjct: 209 YLQEHKTEEKQPQEEQEEEEVEEEAKQEEGQGTDD 243
Score = 26.9 bits (59), Expect = 5.1
Identities = 11/43 (25%), Positives = 24/43 (55%)
Query: 117 EEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
+ + + ++EQ + QE +E + EE++ +EE+EE+
Sbjct: 188 GSVQVKAPKPKQEQLLSKLQEYLQEHKTEEKQPQEEQEEEEVE 230
Score = 26.5 bits (58), Expect = 5.8
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQE 140
K +EK+ ++E EE+E EEE ++EE Q +
Sbjct: 214 KTEEKQPQEEQEEEEVEEEAKQEEGQGTDD 243
>gnl|CDD|218538 pfam05285, SDA1, SDA1. This family consists of several SDA1
protein homologues. SDA1 is a Saccharomyces cerevisiae
protein which is involved in the control of the actin
cytoskeleton. The protein is essential for cell
viability and is localised in the nucleus.
Length = 317
Score = 41.9 bits (99), Expect = 5e-05
Identities = 19/44 (43%), Positives = 31/44 (70%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+KE E D E EEE+++ ++ +E+ +EE EE+EEE EEE++
Sbjct: 124 DKEIESSDSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEA 167
Score = 40.0 bits (94), Expect = 2e-04
Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
+ EDE+E+ E ++ +E+ ++E EE+EEE EEEE E E +
Sbjct: 131 DSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAEKEKA 174
Score = 37.7 bits (88), Expect = 0.001
Identities = 17/44 (38%), Positives = 31/44 (70%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
K KEEE + +E E+ E ++++++EE+ E EE+E+ ++E E D
Sbjct: 77 KWKEEERKKKEAEQGLESDDDDDEEEEWEVEEDEDSDDEGEWID 120
Score = 37.7 bits (88), Expect = 0.001
Identities = 17/45 (37%), Positives = 27/45 (60%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
E+ E +D++ EEEE + EE+E + E E + E ++E E DS
Sbjct: 88 AEQGLESDDDDDEEEEWEVEEDEDSDDEGEWIDVESDKEIESSDS 132
Score = 36.9 bits (86), Expect = 0.002
Identities = 16/41 (39%), Positives = 28/41 (68%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
E+ E+E +++E EQ E + ++ EEEE E EE+E+ ++E
Sbjct: 76 EKWKEEERKKKEAEQGLESDDDDDEEEEWEVEEDEDSDDEG 116
Score = 36.6 bits (85), Expect = 0.003
Identities = 16/47 (34%), Positives = 32/47 (68%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
K KE+E + ++ EQ E + +++EE+E + EE+E+ ++E E + +S
Sbjct: 77 KWKEEERKKKEAEQGLESDDDDDEEEEWEVEEDEDSDDEGEWIDVES 123
Score = 36.6 bits (85), Expect = 0.003
Identities = 14/41 (34%), Positives = 27/41 (65%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
++D+DEE+E E E++E+ + E + + E ++E E + ED
Sbjct: 94 SDDDDDEEEEWEVEEDEDSDDEGEWIDVESDKEIESSDSED 134
Score = 36.6 bits (85), Expect = 0.003
Identities = 15/42 (35%), Positives = 28/42 (66%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
E+ED D+E E + + ++E + E+EEE++E ++ +EDS
Sbjct: 108 EDEDSDDEGEWIDVESDKEIESSDSEDEEEKDEAAKKAKEDS 149
Score = 36.2 bits (84), Expect = 0.004
Identities = 13/40 (32%), Positives = 27/40 (67%)
Query: 118 EDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
E + E + + E EEE+++ ++ +E+ +EE EE+EE++
Sbjct: 122 ESDKEIESSDSEDEEEKDEAAKKAKEDSDEELSEEDEEEA 161
Score = 36.2 bits (84), Expect = 0.004
Identities = 18/47 (38%), Positives = 30/47 (63%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
K KE E+ E ++ ++EEE+ E EE E+ ++E E + E ++E E S
Sbjct: 84 KKKEAEQGLESDDDDDEEEEWEVEEDEDSDDEGEWIDVESDKEIESS 130
Score = 35.8 bits (83), Expect = 0.005
Identities = 20/51 (39%), Positives = 33/51 (64%), Gaps = 4/51 (7%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE----EDSRIL 160
E EEE ++ ++ +E+ +EE +E++EE EEEE E E+E+ +RIL
Sbjct: 133 EDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAEKEKASELATTRIL 183
Score = 34.6 bits (80), Expect = 0.012
Identities = 14/44 (31%), Positives = 28/44 (63%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+ E +D+D+E+EE E +E+E+ +E E + E ++E E + +
Sbjct: 90 QGLESDDDDDEEEEWEVEEDEDSDDEGEWIDVESDKEIESSDSE 133
Score = 34.6 bits (80), Expect = 0.013
Identities = 15/40 (37%), Positives = 27/40 (67%)
Query: 118 EDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
E EE+ +++E E+ E ++ ++EEEE E EE+E+ +D
Sbjct: 76 EKWKEEERKKKEAEQGLESDDDDDEEEEWEVEEDEDSDDE 115
Score = 34.6 bits (80), Expect = 0.013
Identities = 16/42 (38%), Positives = 31/42 (73%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
EK +E+E +++E E+ E +++ +E+EE E EE+E+ ++E E
Sbjct: 76 EKWKEEERKKKEAEQGLESDDDDDEEEEWEVEEDEDSDDEGE 117
Score = 34.6 bits (80), Expect = 0.014
Identities = 13/47 (27%), Positives = 31/47 (65%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+ K++ E+ + + +++EE+E E E++E ++E E + E ++E +S
Sbjct: 83 RKKKEAEQGLESDDDDDEEEEWEVEEDEDSDDEGEWIDVESDKEIES 129
Score = 33.9 bits (78), Expect = 0.021
Identities = 15/51 (29%), Positives = 33/51 (64%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRILI 161
K +E+++++ ++ E +++ +EEEE E +E+E+ ++E E + E D I
Sbjct: 79 KEEERKKKEAEQGLESDDDDDEEEEWEVEEDEDSDDEGEWIDVESDKEIES 129
Score = 33.9 bits (78), Expect = 0.022
Identities = 14/45 (31%), Positives = 28/45 (62%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
E + + D+E E + ++EEE+ E ++ +E+ +EE EE+E+
Sbjct: 117 EWIDVESDKEIESSDSEDEEEKDEAAKKAKEDSDEELSEEDEEEA 161
Score = 33.9 bits (78), Expect = 0.026
Identities = 15/42 (35%), Positives = 27/42 (64%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
+E+ E +EDE+ ++E E + E +E E + E+EEE++E
Sbjct: 101 EEEWEVEEDEDSDDEGEWIDVESDKEIESSDSEDEEEKDEAA 142
Score = 33.1 bits (76), Expect = 0.042
Identities = 14/44 (31%), Positives = 27/44 (61%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
E E D + ++E E E+EE++++ ++ +E+ +EE EED
Sbjct: 115 EGEWIDVESDKEIESSDSEDEEEKDEAAKKAKEDSDEELSEEDE 158
Score = 32.3 bits (74), Expect = 0.073
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
EEDED + E E E +++ E + E+EEE++E ++
Sbjct: 106 VEEDEDSDDEGEWIDVESDKEIESSDSEDEEEKDEAAKKAKEDS 149
Score = 32.3 bits (74), Expect = 0.082
Identities = 11/43 (25%), Positives = 26/43 (60%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
E E++++ +E E + E ++E + + E+EEE++E ++
Sbjct: 105 EVEEDEDSDDEGEWIDVESDKEIESSDSEDEEEKDEAAKKAKE 147
Score = 31.9 bits (73), Expect = 0.11
Identities = 12/43 (27%), Positives = 29/43 (67%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
E EE+++ +++ E + E ++E E + E+EEE++E ++ ++
Sbjct: 105 EVEEDEDSDDEGEWIDVESDKEIESSDSEDEEEKDEAAKKAKE 147
Score = 30.4 bits (69), Expect = 0.36
Identities = 13/43 (30%), Positives = 27/43 (62%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+ E E D E ++E E + E++EE++E ++ +E+ +EE +
Sbjct: 113 DDEGEWIDVESDKEIESSDSEDEEEKDEAAKKAKEDSDEELSE 155
Score = 28.9 bits (65), Expect = 1.3
Identities = 12/33 (36%), Positives = 22/33 (66%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEE 144
K+ +++ +E+ EE++EE E+EE E E+E
Sbjct: 140 EAAKKAKEDSDEELSEEDEEEAAEEEEAEAEKE 172
Score = 28.1 bits (63), Expect = 2.4
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEE 141
K KE+ DE+ +E+EEE EEEE E ++E
Sbjct: 142 AKKAKEDSDEELSEEDEEEAAEEEEAEAEKE 172
>gnl|CDD|237063 PRK12329, nusA, transcription elongation factor NusA; Provisional.
Length = 449
Score = 42.1 bits (99), Expect = 5e-05
Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 108 WMIKPKEKEEED---EDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
W I K+ E D ED + E Q EEEE ++E EE E E+ E EED+R
Sbjct: 366 WKIDIKDSAEYDQEAEDAKVAELISQREEEEALQREAEERLEAEQAERAEEDAR 419
Score = 40.5 bits (95), Expect = 2e-04
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+ +E+E + E E+ E EQ E+ EE+ E E++
Sbjct: 390 SQREEEEALQREAEERLEAEQAERAEEDARLRELYPLPEDE 430
Score = 40.5 bits (95), Expect = 2e-04
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 109 MIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+I +E+EE + E +E E ++ E +E+ E E+E E+ED
Sbjct: 388 LISQREEEEALQREAEERLEAEQAERAEEDARLRELYPLPEDEFEDEDE 436
Score = 39.0 bits (91), Expect = 6e-04
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+E+ E ++ E EE+ E E E E+E+E EE + EEE+
Sbjct: 402 AEERLEAEQAERAEEDARLRELYPLPEDEFEDEDELEEAQPEEEE 446
Score = 37.8 bits (88), Expect = 0.001
Identities = 12/46 (26%), Positives = 26/46 (56%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+ + E E+ + E+ E+ EE+ + + E+E E+E+E E++
Sbjct: 395 EEALQREAEERLEAEQAERAEEDARLRELYPLPEDEFEDEDELEEA 440
Score = 37.5 bits (87), Expect = 0.002
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
E E+ + EE E E E ++E+E EE + EEEEE
Sbjct: 407 EAEQAERAEEDARLRELYPLPEDEFEDEDELEEAQPEEEEEA 448
Score = 36.7 bits (85), Expect = 0.003
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
++E E+ E ++ E +E+ +E E+E E+E+E EE
Sbjct: 399 QREAEERLEAEQAERAEEDARLRELYPLPEDEFEDEDELEEAQ 441
Score = 36.3 bits (84), Expect = 0.003
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+ + E+ E E++ + ++E E+E+E EE + EEEEE
Sbjct: 404 ERLEAEQAERAEEDARLRELYPLPEDEFEDEDELEEAQPEEEEE 447
Score = 36.3 bits (84), Expect = 0.004
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+ EE + EQ E E++ + E+E E+E+E EE +
Sbjct: 400 REAEERLEAEQAERAEEDARLRELYPLPEDEFEDEDELEEAQPE 443
Score = 36.3 bits (84), Expect = 0.004
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+E EE E E+ E EE E E+E E+E+E EE + +
Sbjct: 399 QREAEERLEAEQAERAEEDARLRELYPLPEDEFEDEDELEEAQPE 443
Score = 35.1 bits (81), Expect = 0.010
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+ + ++ E +E+ E E++ E E+E EE + EEEEE
Sbjct: 405 RLEAEQAERAEEDARLRELYPLPEDEFEDEDELEEAQPEEEEEAR 449
>gnl|CDD|220135 pfam09184, PPP4R2, PPP4R2. PPP4R2 (protein phosphatase 4 core
regulatory subunit R2) is the regulatory subunit of the
histone H2A phosphatase complex. It has been shown to
confer resistance to the anticancer drug cisplatin in
yeast, and may confer resistance in higher eukaryotes.
Length = 285
Score = 41.7 bits (98), Expect = 5e-05
Identities = 21/43 (48%), Positives = 35/43 (81%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
K K+ +DE+++ ++ + EE+E +E++EEEE EEEEEEE+E+E
Sbjct: 243 KNKKSDDEEDDDQDGDYVEEKELKEDEEEEETEEEEEEEDEDE 285
Score = 38.7 bits (90), Expect = 5e-04
Identities = 21/43 (48%), Positives = 33/43 (76%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEE 152
K +EED+D++ + EE+E +E++EE+E EEEEEEE+E+E
Sbjct: 243 KNKKSDDEEDDDQDGDYVEEKELKEDEEEEETEEEEEEEDEDE 285
Score = 34.0 bits (78), Expect = 0.018
Identities = 16/37 (43%), Positives = 27/37 (72%)
Query: 120 EDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+ +EE++ ++ + EE+E +E+EEEEE EEEEE+
Sbjct: 244 NKKSDDEEDDDQDGDYVEEKELKEDEEEEETEEEEEE 280
Score = 29.8 bits (67), Expect = 0.49
Identities = 12/35 (34%), Positives = 27/35 (77%)
Query: 123 EQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
++ ++E++++++ + EE+E +E+EEEEE EE+
Sbjct: 244 NKKSDDEEDDDQDGDYVEEKELKEDEEEEETEEEE 278
Score = 27.9 bits (62), Expect = 2.5
Identities = 12/34 (35%), Positives = 24/34 (70%)
Query: 124 QEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+ ++ + EE+++Q+ EE+E +E+EEEEE +
Sbjct: 243 KNKKSDDEEDDDQDGDYVEEKELKEDEEEEETEE 276
Score = 27.5 bits (61), Expect = 2.9
Identities = 12/41 (29%), Positives = 28/41 (68%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+ D + ++ +++E++++ + EE+E +E+EEEEE E+
Sbjct: 236 GPKGSDVKNKKSDDEEDDDQDGDYVEEKELKEDEEEEETEE 276
Score = 27.5 bits (61), Expect = 3.1
Identities = 11/47 (23%), Positives = 28/47 (59%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
++D + + + ++ ++EE ++Q+ + EE+E +E+EEE+
Sbjct: 227 SDAAASQDDGPKGSDVKNKKSDDEEDDDQDGDYVEEKELKEDEEEEE 273
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein
TolA; Provisional.
Length = 387
Score = 41.7 bits (98), Expect = 6e-05
Identities = 12/45 (26%), Positives = 30/45 (66%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
K E++ + ++++Q EE +Q++ EQE ++ E+E +E++++
Sbjct: 75 KRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQ 119
Score = 39.8 bits (93), Expect = 2e-04
Identities = 12/45 (26%), Positives = 29/45 (64%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+ K+KE++ +E Q+++ ++E +Q E+E +E++++ EE
Sbjct: 80 QRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAA 124
Score = 38.6 bits (90), Expect = 7e-04
Identities = 9/47 (19%), Positives = 30/47 (63%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
++K+ +++ ++ E+E+ +EQ++Q EE ++ ++++ E++
Sbjct: 92 LQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAA 138
Score = 37.5 bits (87), Expect = 0.001
Identities = 12/46 (26%), Positives = 30/46 (65%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+ ++K + +E+++++E+Q+ EE Q++Q E+E ++ E+E
Sbjct: 67 QQQQQKSAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLA 112
Score = 37.1 bits (86), Expect = 0.002
Identities = 9/45 (20%), Positives = 27/45 (60%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
K +++ EE + ++ E+E ++ E++ +E++++ EE ++
Sbjct: 84 KEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAA 128
Score = 37.1 bits (86), Expect = 0.002
Identities = 11/51 (21%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 111 KPKEKEEEDE-----DEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
K KE+++ +E EQE ++ E+E ++++++ EE ++ ++
Sbjct: 82 KKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQK 132
Score = 37.1 bits (86), Expect = 0.002
Identities = 10/45 (22%), Positives = 30/45 (66%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+ ++K+E+ + EE ++++ E+E ++ ++E +E++++ EE
Sbjct: 79 EQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEA 123
Score = 36.3 bits (84), Expect = 0.003
Identities = 10/45 (22%), Positives = 24/45 (53%)
Query: 109 MIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
K ++E + E+E QE++++ EE ++ ++++ EE
Sbjct: 93 QQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEA 137
Score = 34.4 bits (79), Expect = 0.018
Identities = 9/43 (20%), Positives = 22/43 (51%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+ K+ E E +E+++Q EE ++ ++++ EE +
Sbjct: 102 RLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAA 144
Score = 33.6 bits (77), Expect = 0.033
Identities = 9/42 (21%), Positives = 21/42 (50%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEE 151
+K EKE E++++ EE ++ ++++ EE +
Sbjct: 103 LKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAA 144
Score = 32.1 bits (73), Expect = 0.11
Identities = 9/44 (20%), Positives = 30/44 (68%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
+++ + ++ EE+ +++E++Q E+ ++++ E+E ++ E R+
Sbjct: 68 QQQQKSAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERL 111
Score = 29.0 bits (65), Expect = 1.0
Identities = 9/37 (24%), Positives = 26/37 (70%)
Query: 123 EQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
+Q++++ + EEQ +++E+++ EE ++++ E R+
Sbjct: 67 QQQQQKSAKRAEEQRKKKEQQQAEELQQKQAAEQERL 103
Score = 29.0 bits (65), Expect = 1.1
Identities = 8/50 (16%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 110 IKPKEKEEEDEDE-EQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
+E+ ++ E E +E++++ EE ++ ++++ EE + ++
Sbjct: 97 AAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAK 146
Score = 28.2 bits (63), Expect = 2.2
Identities = 7/40 (17%), Positives = 28/40 (70%)
Query: 115 KEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
++++ + + EE+++++E+Q+ +E ++++ E+E ++
Sbjct: 66 RQQQQQKSAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQ 105
Score = 27.8 bits (62), Expect = 2.5
Identities = 10/47 (21%), Positives = 31/47 (65%)
Query: 109 MIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
M+ P E+ ++Q+++ + EE+++++E+++ EE ++++ E+
Sbjct: 54 MVDPGAVVEQYNRQQQQQKSAKRAEEQRKKKEQQQAEELQQKQAAEQ 100
Score = 27.5 bits (61), Expect = 3.5
Identities = 7/43 (16%), Positives = 22/43 (51%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEE 152
+ +E++++ E+ ++ +Q++ EE + + + E E
Sbjct: 111 LAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEA 153
Score = 27.1 bits (60), Expect = 4.6
Identities = 7/44 (15%), Positives = 21/44 (47%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
++K++ +E +Q ++++ EE + + + E E +
Sbjct: 115 EQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAA 158
Score = 26.7 bits (59), Expect = 6.5
Identities = 7/42 (16%), Positives = 20/42 (47%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
K+ E + + + E ++ E +++ E E + E +++
Sbjct: 161 KKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKK 202
Score = 26.7 bits (59), Expect = 6.7
Identities = 8/40 (20%), Positives = 29/40 (72%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
E+ + ++Q++ ++ EE+ +++++++ EE ++++ E+E
Sbjct: 62 EQYNRQQQQQKSAKRAEEQRKKKEQQQAEELQQKQAAEQE 101
Score = 26.3 bits (58), Expect = 7.9
Identities = 9/42 (21%), Positives = 22/42 (52%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
K+K E + ++ E +++ E E + E +++ E E ++
Sbjct: 168 KKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKK 209
>gnl|CDD|203043 pfam04546, Sigma70_ner, Sigma-70, non-essential region. The domain
is found in the primary vegetative sigma factor. The
function of this domain is unclear and can be removed
without loss of function.
Length = 211
Score = 41.0 bits (97), Expect = 6e-05
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
I P E E ++E+ E+ ++ +E+E+E++EEE + D
Sbjct: 30 IDPNAAAAAATAAAIESELDEEDLEDDDDDDEDEDEDDEEEADLGPD 76
Score = 37.2 bits (87), Expect = 0.001
Identities = 9/45 (20%), Positives = 27/45 (60%)
Query: 117 EEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRILI 161
+ + E E ++E+ E++++++E+E+E++EE++ +
Sbjct: 31 DPNAAAAAATAAAIESELDEEDLEDDDDDDEDEDEDDEEEADLGP 75
Score = 31.4 bits (72), Expect = 0.15
Identities = 9/40 (22%), Positives = 25/40 (62%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
+ + ++E+ E+ ++++E E++++EEE + + EE
Sbjct: 40 TAAAIESELDEEDLEDDDDDDEDEDEDDEEEADLGPDPEE 79
Score = 30.2 bits (69), Expect = 0.30
Identities = 10/38 (26%), Positives = 25/38 (65%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEE 149
+ E DE++ ++++++ E+E+E +E+E + + EE
Sbjct: 42 AAIESELDEEDLEDDDDDDEDEDEDDEEEADLGPDPEE 79
Score = 30.2 bits (69), Expect = 0.36
Identities = 12/41 (29%), Positives = 24/41 (58%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
E E EE+ E +++++++E E++EEE + + EE
Sbjct: 39 ATAAAIESELDEEDLEDDDDDDEDEDEDDEEEADLGPDPEE 79
Score = 28.3 bits (64), Expect = 1.6
Identities = 6/34 (17%), Positives = 16/34 (47%)
Query: 124 QEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+ + E +EE+ E++++++ED
Sbjct: 30 IDPNAAAAAATAAAIESELDEEDLEDDDDDDEDE 63
Score = 26.8 bits (60), Expect = 4.6
Identities = 12/36 (33%), Positives = 25/36 (69%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEE 145
I+ + EE+ ED++ ++E+E E++EE+ + + EE
Sbjct: 44 IESELDEEDLEDDDDDDEDEDEDDEEEADLGPDPEE 79
>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein. This
protein is covalently attached to the terminii of
replicating DNA in vivo.
Length = 548
Score = 41.6 bits (98), Expect = 7e-05
Identities = 22/33 (66%), Positives = 24/33 (72%)
Query: 122 EEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
E EEE+EEEEE E+EEEEEEEEE EEE
Sbjct: 301 SPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333
Score = 41.2 bits (97), Expect = 8e-05
Identities = 21/34 (61%), Positives = 24/34 (70%)
Query: 122 EEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
E EE+EEEEE+ +EEEEEEEEEE EEE
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333
Score = 40.0 bits (94), Expect = 2e-04
Identities = 22/36 (61%), Positives = 25/36 (69%)
Query: 123 EQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
E E+EEEEE+E EEEEEEEEEEE EE+ R
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEEVR 335
Score = 38.9 bits (91), Expect = 6e-04
Identities = 21/34 (61%), Positives = 24/34 (70%)
Query: 120 EDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
+ EEEE+EEEE EE+EEEEEEEE EEE
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333
Score = 38.5 bits (90), Expect = 8e-04
Identities = 21/36 (58%), Positives = 25/36 (69%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEE 147
P E E+EE+EEEE EEEEE+EE+EE EEE
Sbjct: 298 PPPSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333
Score = 37.3 bits (87), Expect = 0.002
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 130 QEEEEEQEEQEEEEEEEEEEEEEEEEDSRIL 160
E +EE+EEEEE EEEEEEEEE+ R
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERTF 330
Score = 36.9 bits (86), Expect = 0.002
Identities = 20/34 (58%), Positives = 24/34 (70%)
Query: 118 EDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEE 151
E +EEEEE+EE E+EE+EEEEEE EEE
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333
Score = 36.5 bits (85), Expect = 0.004
Identities = 19/34 (55%), Positives = 24/34 (70%)
Query: 117 EEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEE 150
+ E+EEEEE+E EE+EE+EEEEE EEE
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333
Score = 36.2 bits (84), Expect = 0.005
Identities = 20/34 (58%), Positives = 24/34 (70%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEE 149
E EE+EEEEE+ EEE+EE+EEEE EEE
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEE 333
>gnl|CDD|218223 pfam04712, Radial_spoke, Radial spokehead-like protein. This
family includes the radial spoke head proteins RSP4 and
RSP6 from Chlamydomonas reinhardtii, and several
eukaryotic homologues, including mammalian RSHL1, the
protein product of a familial ciliary dyskinesia
candidate gene.
Length = 481
Score = 41.6 bits (98), Expect = 7e-05
Identities = 21/35 (60%), Positives = 27/35 (77%)
Query: 126 EEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRIL 160
E+++EEEEQE++EEEEEEEE EE E EE +L
Sbjct: 343 NPEQKDEEEEQEDEEEEEEEEEPEEPEPEEGPPLL 377
Score = 40.4 bits (95), Expect = 1e-04
Identities = 18/31 (58%), Positives = 24/31 (77%)
Query: 125 EEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
E++ EEEE+++E+EEEEEEE EE E EE
Sbjct: 343 NPEQKDEEEEQEDEEEEEEEEEPEEPEPEEG 373
Score = 40.4 bits (95), Expect = 2e-04
Identities = 21/43 (48%), Positives = 29/43 (67%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEE 152
I P+ + E+++EEEEQE+EEE+EE+EE EE E EE
Sbjct: 333 ILPQGRCTWVNPEQKDEEEEQEDEEEEEEEEEPEEPEPEEGPP 375
Score = 40.0 bits (94), Expect = 2e-04
Identities = 18/33 (54%), Positives = 26/33 (78%)
Query: 121 DEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
+ EQ++EEE++E+EE+EE+EEE EE E EE
Sbjct: 343 NPEQKDEEEEQEDEEEEEEEEEPEEPEPEEGPP 375
Score = 39.7 bits (93), Expect = 3e-04
Identities = 19/34 (55%), Positives = 25/34 (73%)
Query: 105 CVFWMIKPKEKEEEDEDEEQEEEEEQEEEEEQEE 138
C + + K++EEE EDEE+EEEEE+ EE E EE
Sbjct: 339 CTWVNPEQKDEEEEQEDEEEEEEEEEPEEPEPEE 372
Score = 38.1 bits (89), Expect = 0.001
Identities = 17/31 (54%), Positives = 25/31 (80%)
Query: 125 EEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
E+++E+EE+E++EE+EEEEE EE E EE
Sbjct: 345 EQKDEEEEQEDEEEEEEEEEPEEPEPEEGPP 375
Score = 37.3 bits (87), Expect = 0.002
Identities = 14/35 (40%), Positives = 25/35 (71%)
Query: 108 WMIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEE 142
W+ ++ EEE++++E+EEEEE+E EE + E+
Sbjct: 341 WVNPEQKDEEEEQEDEEEEEEEEEPEEPEPEEGPP 375
Score = 33.5 bits (77), Expect = 0.040
Identities = 23/37 (62%), Positives = 28/37 (75%)
Query: 119 DEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
E EE+EEEEE E +E++E EEEEEEE EE +EEE
Sbjct: 168 REGEEEEEEEEVGEADEEDEGEEEEEEEPEEVPKEEE 204
Score = 31.6 bits (72), Expect = 0.15
Identities = 20/37 (54%), Positives = 28/37 (75%)
Query: 117 EEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
E E+EE+EEE + +EE++ E+EEEEE EE +EEE
Sbjct: 168 REGEEEEEEEEVGEADEEDEGEEEEEEEPEEVPKEEE 204
Score = 31.6 bits (72), Expect = 0.16
Identities = 23/35 (65%), Positives = 26/35 (74%)
Query: 120 EDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
E E +E EEE+EEEE E EE+E EEEEEEE EE
Sbjct: 164 EVELREGEEEEEEEEVGEADEEDEGEEEEEEEPEE 198
Score = 31.2 bits (71), Expect = 0.21
Identities = 21/37 (56%), Positives = 28/37 (75%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEE 152
E +E+EE+EE E +EE+E EE+EEEE EE +EEE
Sbjct: 168 REGEEEEEEEEVGEADEEDEGEEEEEEEPEEVPKEEE 204
Score = 30.4 bits (69), Expect = 0.39
Identities = 19/35 (54%), Positives = 26/35 (74%)
Query: 122 EEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
E + E E+EEEEE+ + +EE+E EEEEEEE E+
Sbjct: 164 EVELREGEEEEEEEEVGEADEEDEGEEEEEEEPEE 198
Score = 30.4 bits (69), Expect = 0.39
Identities = 21/38 (55%), Positives = 25/38 (65%)
Query: 121 DEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
E +EEEEE+E E EE E EEEEEEE EE +E+
Sbjct: 168 REGEEEEEEEEVGEADEEDEGEEEEEEEPEEVPKEEEG 205
Score = 30.4 bits (69), Expect = 0.43
Identities = 18/36 (50%), Positives = 23/36 (63%)
Query: 125 EEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRIL 160
EEEEE+EEEEE E++E EE + E E E + L
Sbjct: 288 EEEEEEEEEEEPAERDELEENPDFEGLEVRELADSL 323
Score = 30.0 bits (68), Expect = 0.48
Identities = 23/41 (56%), Positives = 29/41 (70%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
E E + +EE+EEEE E +EE E +EEEEEE EE +EEE
Sbjct: 164 EVELREGEEEEEEEEVGEADEEDEGEEEEEEEPEEVPKEEE 204
Score = 30.0 bits (68), Expect = 0.51
Identities = 18/36 (50%), Positives = 25/36 (69%)
Query: 126 EEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRILI 161
E E +E EEE+EE+E E +EE+E EEEEE+ +
Sbjct: 164 EVELREGEEEEEEEEVGEADEEDEGEEEEEEEPEEV 199
Score = 29.6 bits (67), Expect = 0.63
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 124 QEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
Q EEEE+EEEEE+ + +E EE + E E +
Sbjct: 286 QLEEEEEEEEEEEPAERDELEENPDFEGLEVRE 318
Score = 29.6 bits (67), Expect = 0.70
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 123 EQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
+EEEEE+EEEE E E EE + E E E
Sbjct: 287 LEEEEEEEEEEEPAERDELEENPDFEGLEVRE 318
Score = 28.9 bits (65), Expect = 1.2
Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 38/78 (48%)
Query: 117 EEDEDEEQEEEEEQEEEEEQEEQE------------------------------------ 140
E+E+EE+EEEE E +E +E +
Sbjct: 287 LEEEEEEEEEEEPAERDELEENPDFEGLEVRELADSLDNWVHHVQHILPQGRCTWVNPEQ 346
Query: 141 --EEEEEEEEEEEEEEED 156
EEEE+E+EEEEEEEE+
Sbjct: 347 KDEEEEQEDEEEEEEEEE 364
Score = 28.9 bits (65), Expect = 1.2
Identities = 20/35 (57%), Positives = 25/35 (71%)
Query: 123 EQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
E E E +EEEEE+E E +EE+E EEEEEEE +
Sbjct: 164 EVELREGEEEEEEEEVGEADEEDEGEEEEEEEPEE 198
Score = 27.7 bits (62), Expect = 2.6
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 126 EEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
EEE+EEEEE+E E +E EE + E E
Sbjct: 287 LEEEEEEEEEEEPAERDELEENPDFEGLEVRE 318
Score = 27.7 bits (62), Expect = 3.0
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 122 EEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
E+EEEEE+EEE + ++ EE + E E E DS
Sbjct: 287 LEEEEEEEEEEEPAERDELEENPDFEGLEVRELADS 322
Score = 26.9 bits (60), Expect = 4.9
Identities = 18/36 (50%), Positives = 25/36 (69%)
Query: 125 EEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRIL 160
E E + EEEE+EE+ E +EE+E EEEEEE+ +
Sbjct: 164 EVELREGEEEEEEEEVGEADEEDEGEEEEEEEPEEV 199
Score = 26.9 bits (60), Expect = 5.3
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEE 152
I P+ + +E+EE+EEEEE E +E EE + E E E +
Sbjct: 279 IAPRGLYQLEEEEEEEEEEEPAERDELEENPDFEGLEVRELAD 321
Score = 26.6 bits (59), Expect = 7.3
Identities = 14/19 (73%), Positives = 14/19 (73%)
Query: 139 QEEEEEEEEEEEEEEEEDS 157
Q EEEEEEEEEEE E D
Sbjct: 286 QLEEEEEEEEEEEPAERDE 304
>gnl|CDD|226920 COG4547, CobT, Cobalamin biosynthesis protein CobT
(nicotinate-mononucleotide:5, 6-dimethylbenzimidazole
phosphoribosyltransferase) [Coenzyme metabolism].
Length = 620
Score = 41.4 bits (97), Expect = 8e-05
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+ EED DEE ++++ + E+ E EE E +E EE+E E +
Sbjct: 223 GDDGIEEDADEEDGDDDQPDNNEDSEAGREESEGSDESEEDEAEAT 268
Score = 39.8 bits (93), Expect = 3e-04
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
P E+ + E+ E ++ EE+E E + E EE E + E EDS
Sbjct: 241 PDNNEDSEAGREESEGSDESEEDEAEATDGEGEEGEMDAAEASEDS 286
Score = 36.7 bits (85), Expect = 0.003
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEE-----EEEEEEEEEEDS 157
+ +E E +E EE E E E EE E + E+ E +E +ED+
Sbjct: 247 SEAGREESEGSDESEEDEAEATDGEGEEGEMDAAEASEDSESDESDEDT 295
Score = 35.2 bits (81), Expect = 0.010
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEE------QEEEEEEEEEEEEEEEEDSR 158
E E DE EE E E E EE E ++ E +E +E+ E ED+R
Sbjct: 253 ESEGSDESEEDEAEATDGEGEEGEMDAAEASEDSESDESDEDTETPGEDAR 303
Score = 29.0 bits (65), Expect = 1.3
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEE 151
+++ E + E +E E + E E E +E +E+ E E
Sbjct: 261 EEDEAEATDGEGEEGEMDAAEASEDSESDESDEDTETPGE 300
>gnl|CDD|218333 pfam04931, DNA_pol_phi, DNA polymerase phi. This family includes
the fifth essential DNA polymerase in yeast EC:2.7.7.7.
Pol5p is localised exclusively to the nucleolus and
binds near or at the enhancer region of rRNA-encoding
DNA repeating units.
Length = 784
Score = 41.0 bits (96), Expect = 1e-04
Identities = 18/44 (40%), Positives = 32/44 (72%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
E+E+ED+ EE +++E++ E E E E E + E+ EE+E+E+D+
Sbjct: 648 EEEDEDDLEETDDDEDECEAIEDSESESESDGEDGEEDEQEDDA 691
Score = 40.2 bits (94), Expect = 2e-04
Identities = 18/48 (37%), Positives = 32/48 (66%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
+ E EEEDED+ +E +++++E E E+ E E E + E+ EE+E++
Sbjct: 643 QLFEGEEEDEDDLEETDDDEDECEAIEDSESESESDGEDGEEDEQEDD 690
Score = 38.3 bits (89), Expect = 8e-04
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 115 KEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
EE D+DE++ E E E E + + E+ EE+E+E++ E E
Sbjct: 655 LEETDDDEDECEAIEDSESESESDGEDGEEDEQEDDAEANEG 696
Score = 36.0 bits (83), Expect = 0.006
Identities = 13/47 (27%), Positives = 29/47 (61%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
++ E E+E++++ EE +++E++ E E+ E E E + E+ E+
Sbjct: 639 SRHQQLFEGEEEDEDDLEETDDDEDECEAIEDSESESESDGEDGEED 685
Score = 34.8 bits (80), Expect = 0.015
Identities = 15/48 (31%), Positives = 27/48 (56%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+K E + + + EEE++++ EE ++ E+E E E+ E E E D
Sbjct: 632 LKADENKSRHQQLFEGEEEDEDDLEETDDDEDECEAIEDSESESESDG 679
Score = 33.7 bits (77), Expect = 0.029
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
E+ ++DEDE + E+ + E E E EE+E+E++ E E
Sbjct: 655 LEETDDDEDECEAIEDSESESESDGEDGEEDEQEDDAEANE 695
Score = 33.7 bits (77), Expect = 0.029
Identities = 12/47 (25%), Positives = 27/47 (57%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
++ E EE++E++ +E +++++E E E+ E E E + E+
Sbjct: 637 NKSRHQQLFEGEEEDEDDLEETDDDEDECEAIEDSESESESDGEDGE 683
Score = 31.4 bits (71), Expect = 0.22
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+ + E +EE+E+ EE + +E E E E+ E E E + +
Sbjct: 635 DENKSRHQQLFEGEEEDEDDLEETDDDEDECEAIEDSESESESDGED 681
Score = 29.5 bits (66), Expect = 0.81
Identities = 12/46 (26%), Positives = 23/46 (50%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
++ E ED E E E + E+ EE E++++ E E ++ +
Sbjct: 663 DECEAIEDSESESESDGEDGEEDEQEDDAEANEGVVPIDKAVRRAL 708
Score = 29.1 bits (65), Expect = 1.2
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRIL 160
E E E ++ + E E E+ E++EQE++ E E ++ R L
Sbjct: 662 EDECEAIEDSESESESDGEDGEEDEQEDDAEANEGVVPIDKAVRRAL 708
Score = 27.5 bits (61), Expect = 3.7
Identities = 11/52 (21%), Positives = 22/52 (42%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRILI 161
I+ E E E + E+ EE+E++++ E E ++ + L
Sbjct: 668 IEDSESESESDGEDGEEDEQEDDAEANEGVVPIDKAVRRALPKVLNLPDALD 719
Score = 26.8 bits (59), Expect = 6.0
Identities = 9/41 (21%), Positives = 21/41 (51%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
E E ++ E + E + ++ EE+++E + E E ++
Sbjct: 663 DECEAIEDSESESESDGEDGEEDEQEDDAEANEGVVPIDKA 703
Score = 26.8 bits (59), Expect = 7.3
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 121 DEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
DE + ++ E EE++E + EE +++E+E E EDS
Sbjct: 635 DENKSRHQQLFEGEEEDEDDLEETDDDEDECEAIEDSES 673
Score = 26.4 bits (58), Expect = 8.3
Identities = 11/45 (24%), Positives = 26/45 (57%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
+++E + E+ E E E + E+ +E+++E++ E E ++ R
Sbjct: 661 DEDECEAIEDSESESESDGEDGEEDEQEDDAEANEGVVPIDKAVR 705
>gnl|CDD|221203 pfam11748, DUF3306, Protein of unknown function (DUF3306). This
family of proteobacterial species proteins has no known
function.
Length = 115
Score = 38.8 bits (91), Expect = 1e-04
Identities = 16/41 (39%), Positives = 18/41 (43%)
Query: 115 KEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
K +E E E EEE EEEEE E E+EE
Sbjct: 10 KLAVRAEEPAEPAETAEEEAAAAAPAPAPEEEEEAELEDEE 50
Score = 37.7 bits (88), Expect = 5e-04
Identities = 17/47 (36%), Positives = 21/47 (44%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
K + EE + + EEE EEEEE E E+EE EE
Sbjct: 10 KLAVRAEEPAEPAETAEEEAAAAAPAPAPEEEEEAELEDEELLEELD 56
Score = 36.5 bits (85), Expect = 0.001
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 120 EDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRIL 160
+E E E EE+ EEEEE E ED +L
Sbjct: 12 AVRAEEPAEPAETAEEEAAAAAPAPAPEEEEEAELEDEELL 52
Score = 33.0 bits (76), Expect = 0.017
Identities = 15/46 (32%), Positives = 19/46 (41%)
Query: 107 FWMIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEE 152
W + E+ E E EE+ EEEEE E E+EE
Sbjct: 5 RWSRRKLAVRAEEPAEPAETAEEEAAAAAPAPAPEEEEEAELEDEE 50
Score = 32.3 bits (74), Expect = 0.034
Identities = 15/46 (32%), Positives = 22/46 (47%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+ +E E E E+E +EE+E E E+EE EE + D
Sbjct: 14 RAEEPAEPAETAEEEAAAAAPAPAPEEEEEAELEDEELLEELDLPD 59
Score = 31.1 bits (71), Expect = 0.090
Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 114 EKEEEDEDEEQEEEEEQ--EEEEEQEEQEEEEEEEEEEEEEEEEDS 157
EE E E EEE EE+EE E E+EE EE +
Sbjct: 14 RAEEPAEPAETAEEEAAAAAPAPAPEEEEEAELEDEELLEELDLPD 59
Score = 30.3 bits (69), Expect = 0.15
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
E +EE EE+EE E E+EE EE + + D+
Sbjct: 21 PAETAEEEAAAAAPAPAPEEEEEAELEDEELLEELDLPDPDT 62
Score = 29.6 bits (67), Expect = 0.29
Identities = 13/43 (30%), Positives = 18/43 (41%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
E+E EEE+E E E EE EE + + + D
Sbjct: 26 EEEAAAAAPAPAPEEEEEAELEDEELLEELDLPDPDTLTPGSD 68
Score = 29.6 bits (67), Expect = 0.37
Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 4/48 (8%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEE----EEEEEEDS 157
E +E+ EEEE+ E E+EE EE + +
Sbjct: 21 PAETAEEEAAAAAPAPAPEEEEEAELEDEELLEELDLPDPDTLTPGSD 68
>gnl|CDD|219408 pfam07423, DUF1510, Protein of unknown function (DUF1510). This
family consists of several hypothetical bacterial
proteins of around 200 residues in length. The function
of this family is unknown.
Length = 214
Score = 40.1 bits (94), Expect = 2e-04
Identities = 20/47 (42%), Positives = 31/47 (65%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
K E+ ED+ E+E++E EEE EE++EE +E E+E EE+ +S
Sbjct: 70 KEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDENEKETEEKTES 116
Score = 39.7 bits (93), Expect = 2e-04
Identities = 19/49 (38%), Positives = 32/49 (65%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
++KE++ + E+++EE E+E EEE EE +E E+E EE+ E + I
Sbjct: 74 NSEDKEDKGDAEKEDEESEEENEEEDEESSDENEKETEEKTESNVEKEI 122
Score = 37.8 bits (88), Expect = 0.001
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+ E+EDE+ E+E EEE EE ++ E+E EE+ E E+E S
Sbjct: 80 DKGDAEKEDEESEEENEEEDEESSDENEKETEEKTESNVEKEITNPS 126
Score = 37.4 bits (87), Expect = 0.001
Identities = 17/47 (36%), Positives = 33/47 (70%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
+E +EE+++ E++E + + E+E++E EEE EEE+EE +E+ +
Sbjct: 63 EEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDENEKE 109
Score = 36.3 bits (84), Expect = 0.003
Identities = 19/45 (42%), Positives = 32/45 (71%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+ E E+ EE++E E++E++ + E+E+EE EEE EEE+E+S
Sbjct: 58 ETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEES 102
Score = 35.5 bits (82), Expect = 0.005
Identities = 18/46 (39%), Positives = 32/46 (69%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
I+ ++EE++ +++E++ + E+E EE EEE EEE+EE +E E
Sbjct: 62 IEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDENE 107
Score = 35.5 bits (82), Expect = 0.005
Identities = 17/44 (38%), Positives = 32/44 (72%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+ +E ++E++E E++E++ + E+++EE EEE EEE+EE D
Sbjct: 61 EIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSD 104
Score = 35.5 bits (82), Expect = 0.006
Identities = 17/45 (37%), Positives = 31/45 (68%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
++ E E+ ++EE+E E+++++ + E+E+EE EEE EEED
Sbjct: 56 DQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDE 100
Score = 35.1 bits (81), Expect = 0.008
Identities = 18/47 (38%), Positives = 32/47 (68%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
K ++E + +E +EEE+E E++E++ + E+E+EE EEE EE+
Sbjct: 53 KSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEED 99
Score = 34.3 bits (79), Expect = 0.013
Identities = 19/46 (41%), Positives = 29/46 (63%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+ E EE E+E++ E +E++ E+E+EE EEE EEE+EE
Sbjct: 58 ETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESS 103
Score = 34.3 bits (79), Expect = 0.014
Identities = 17/47 (36%), Positives = 35/47 (74%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+K +EKE + ++++++ + ++E+EE EE+ EEE+EE +E E+E +
Sbjct: 65 VKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDENEKETE 111
Score = 33.9 bits (78), Expect = 0.018
Identities = 19/48 (39%), Positives = 33/48 (68%), Gaps = 3/48 (6%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEE---QEEQEEEEEEEEEEEEEEEEDS 157
+E ++ D+ E E EE +EEE+E E++E++ + E+E+EE EEE+
Sbjct: 49 QEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENE 96
Score = 32.8 bits (75), Expect = 0.053
Identities = 18/47 (38%), Positives = 29/47 (61%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
K + +E E EE +EEE++ E +E + + E+E+EE EEE E+
Sbjct: 52 KKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEE 98
Score = 32.4 bits (74), Expect = 0.063
Identities = 18/47 (38%), Positives = 33/47 (70%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
KE+E+E + E +E++ E+E++E +EE EEE+EE +E E+++
Sbjct: 65 VKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDENEKETE 111
Score = 30.5 bits (69), Expect = 0.29
Identities = 12/48 (25%), Positives = 26/48 (54%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
P ++ +EQE ++ ++E + E+ +EEE+E E++E+
Sbjct: 36 FPSSPSDQAAADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGD 83
Score = 27.4 bits (61), Expect = 3.4
Identities = 12/51 (23%), Positives = 26/51 (50%)
Query: 107 FWMIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
++ DE++ ++ + +E E EE +EEE+E E++E++
Sbjct: 33 QLFFPSSPSDQAAADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGD 83
>gnl|CDD|239286 cd02988, Phd_like_VIAF, Phosducin (Phd)-like family, Viral
inhibitor of apoptosis (IAP)-associated factor (VIAF)
subfamily; VIAF is a Phd-like protein that functions in
caspase activation during apoptosis. It was identified
as an IAP binding protein through a screen of a human
B-cell library using a prototype IAP. VIAF lacks a
consensus IAP binding motif and while it does not
function as an IAP antagonist, it still plays a
regulatory role in the complete activation of caspases.
VIAF itself is a substrate for IAP-mediated
ubiquitination, suggesting that it may be a target of
IAPs in the prevention of cell death. The similarity of
VIAF to Phd points to a potential role distinct from
apoptosis regulation. Phd functions as a cytosolic
regulator of G protein by specifically binding to G
protein betagamma (Gbg)-subunits. The C-terminal domain
of Phd adopts a thioredoxin fold, but it does not
contain a CXXC motif. Phd interacts with G protein beta
mostly through the N-terminal helical domain.
Length = 192
Score = 39.9 bits (94), Expect = 2e-04
Identities = 16/46 (34%), Positives = 27/46 (58%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+ PK ++E+EE E QE E E++ +E +EE +EEE++
Sbjct: 13 LPPKPPSPKEEEEEALELAIQEAHENALEKKLLDELDEELDEEEDD 58
Score = 37.6 bits (88), Expect = 0.001
Identities = 13/45 (28%), Positives = 26/45 (57%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
KP +EE+E+ + +E E +++ +E +EE +EEE++
Sbjct: 16 KPPSPKEEEEEALELAIQEAHENALEKKLLDELDEELDEEEDDRF 60
Score = 26.1 bits (58), Expect = 7.7
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 11/47 (23%)
Query: 125 EEEEEQEEEEEQEEQEEEEEEEE-----------EEEEEEEEDSRIL 160
+ +EEEE+ + +E E +EE +EEED R L
Sbjct: 15 PKPPSPKEEEEEALELAIQEAHENALEKKLLDELDEELDEEEDDRFL 61
>gnl|CDD|221275 pfam11861, DUF3381, Domain of unknown function (DUF3381). This
domain is functionally uncharacterized. This domain is
found in eukaryotes. This presumed domain is typically
between 156 to 174 amino acids in length. This domain is
found associated with pfam07780, pfam01728.
Length = 154
Score = 39.2 bits (92), Expect = 2e-04
Identities = 18/48 (37%), Positives = 29/48 (60%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
K+++EE+E+EE E EE EEE+ E E+E + + E+ E E +
Sbjct: 96 LDKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQ 143
Score = 35.7 bits (83), Expect = 0.004
Identities = 17/46 (36%), Positives = 28/46 (60%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
K + +++E+EEEEE E EE EE++ +E E+E + + E R
Sbjct: 92 KLLGLDKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRR 137
Score = 33.4 bits (77), Expect = 0.020
Identities = 14/47 (29%), Positives = 31/47 (65%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+ +E+EEE+ + E+ +EEEQ +E ++E + + E+ E E ++++
Sbjct: 99 KEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQKE 145
Score = 33.0 bits (76), Expect = 0.033
Identities = 15/48 (31%), Positives = 31/48 (64%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRIL 160
+E E E+ DEE++ +E E+E + ++E+ E E +++E +E ++L
Sbjct: 107 EEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQKEILKEQMKML 154
Score = 31.1 bits (71), Expect = 0.16
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 5/48 (10%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQE-----EQEEEEEEEEEEEEEE 153
K KE+EEE+E E +E +EE++ +E E + E+ E E +++E
Sbjct: 99 KEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQKEI 146
Score = 30.7 bits (70), Expect = 0.17
Identities = 18/52 (34%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 109 MIKPKEKEEEDEDEEQEEEEEQEE--EEEQEEQEEEEEEEEEEEEEEEEDSR 158
+ K ++++++EE+EEE E EE EEEQ ++ E+E + + E+ E+ R
Sbjct: 90 VRKLLGLDKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENER 141
>gnl|CDD|238682 cd01386, MYSc_type_XVIII, Myosin motor domain, type XVIII myosins.
This catalytic (head) domain has ATPase activity and
belongs to the larger group of P-loop NTPases. Myosins
are actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 767
Score = 40.2 bits (94), Expect = 2e-04
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 10/67 (14%)
Query: 25 KGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPN 84
+ + FE+LC NY E LQ F+ F E Y +EG+ +EF L E P
Sbjct: 393 RAATFEELCHNYLQERLQLLFHHRTFVQPLERYAEEGVE---VEFD-------LAEPSPG 442
Query: 85 GLLCVLD 91
+ ++D
Sbjct: 443 TTVALVD 449
>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein. The YqfQ-like protein family
includes the B. subtilis YqfQ protein, also known as
VrrA, which is functionally uncharacterized. This family
of proteins is found in bacteria. Proteins in this
family are typically between 146 and 237 amino acids in
length. There are two conserved sequence motifs: QYGP
and PKLY.
Length = 155
Score = 39.0 bits (91), Expect = 2e-04
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 108 WMIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEE 151
W I + +DE+EE EEE E E+E + + E +E+++ E
Sbjct: 85 WKIFRELSSSDDEEEETEEESTDETEQEDPPETKTESKEKKKRE 128
Score = 38.2 bits (89), Expect = 4e-04
Identities = 19/59 (32%), Positives = 32/59 (54%)
Query: 101 PMVSCVFWMIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
P+V + M K + +DEE+E EEE +E EQE+ E + E +E+++ E +
Sbjct: 76 PLVRNLPAMWKIFRELSSSDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKT 134
Score = 38.2 bits (89), Expect = 4e-04
Identities = 13/48 (27%), Positives = 28/48 (58%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
+ EEE+ +EE +E EQE+ E + + +E+++ E + + E++
Sbjct: 92 SSSDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKP 139
>gnl|CDD|130712 TIGR01651, CobT, cobaltochelatase, CobT subunit. This model
describes Pseudomonas denitrificans CobT gene product,
which is a cobalt chelatase subunit that functions in
cobalamin biosynthesis. Cobalamin (vitamin B12) can be
synthesized via several pathways, including an aerobic
pathway (found in Pseudomonas denitrificans) and an
anaerobic pathway (found in P. shermanii and Salmonella
typhimurium). These pathways differ in the point of
cobalt insertion during corrin ring formation. There are
apparently a number of variations on these two pathways,
where the major differences seem to be concerned with
the process of ring contraction. Confusion regarding the
functions of enzymes found in the aerobic vs. anaerobic
pathways has arisen because nonhomologous genes in these
different pathways were given the same gene symbols.
Thus, cobT in the aerobic pathway (P. denitrificans) is
not a homolog of cobT in the anaerobic pathway (S.
typhimurium). It should be noted that E. coli
synthesizes cobalamin only when it is supplied with the
precursor cobinamide, which is a complex intermediate.
Additionally, all E. coli cobalamin synthesis genes
(cobU, cobS and cobT) were named after their Salmonella
typhimurium homologs which function in the anaerobic
cobalamin synthesis pathway. This model describes the
aerobic cobalamin pathway Pseudomonas denitrificans CobT
gene product, which is a cobalt chelatase subunit, with
a MW ~70 kDa. The aerobic pathway cobalt chelatase is a
heterotrimeric, ATP-dependent enzyme that catalyzes
cobalt insertion during cobalamin biosynthesis. The
other two subunits are the P. denitrificans CobS
(TIGR01650) and CobN (pfam02514 CobN/Magnesium
Chelatase) proteins. To avoid potential confusion with
the nonhomologous Salmonella typhimurium/E.coli cobT
gene product, the P. denitrificans gene symbol is not
used in the name of this model [Biosynthesis of
cofactors, prosthetic groups, and carriers, Heme,
porphyrin, and cobalamin].
Length = 600
Score = 39.9 bits (93), Expect = 2e-04
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 111 KPKEKEEEDEDE---EQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
E EE+ +D+ E E+EE+ E E E +E +E E + E E +
Sbjct: 207 TESEDEEDGDDDQPTENEQEEQGEGEGEGQEGSAPQESEATDRESESGE 255
Score = 38.0 bits (88), Expect = 0.001
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+P E E+E++ E + E +E +E E + E E EEE + ++D
Sbjct: 219 QPTENEQEEQGEGEGEGQEGSAPQESEATDRESESGEEEMVQSDQD 264
Score = 35.7 bits (82), Expect = 0.007
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 117 EEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
E+E EEQ E E + +E ++ E + E E EEE S
Sbjct: 221 TENEQEEQGEGEGEGQEGSAPQESEATDRESESGEEEMVQS 261
Score = 34.1 bits (78), Expect = 0.024
Identities = 11/43 (25%), Positives = 22/43 (51%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+ E E E +E +E E + + E EEE + ++++ +E
Sbjct: 228 QGEGEGEGQEGSAPQESEATDRESESGEEEMVQSDQDDLPDES 270
Score = 33.4 bits (76), Expect = 0.037
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEE-------EEEEEEEEDS 157
E+EE+ E E + +E +E E ++E E EEE + +E ++DS
Sbjct: 224 EQEEQGEGEGEGQEGSAPQESEATDRESESGEEEMVQSDQDDLPDESDDDS 274
Score = 30.3 bits (68), Expect = 0.40
Identities = 10/45 (22%), Positives = 20/45 (44%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
E E E + E E EEE + +++ +E +++ E +
Sbjct: 237 EGSAPQESEATDRESESGEEEMVQSDQDDLPDESDDDSETPGEGA 281
Score = 29.1 bits (65), Expect = 1.1
Identities = 8/40 (20%), Positives = 20/40 (50%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEE 151
++ E + E + EEE + ++ + +E +++ E E
Sbjct: 240 APQESEATDRESESGEEEMVQSDQDDLPDESDDDSETPGE 279
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family. Atrophin-1 is the
protein product of the dentatorubral-pallidoluysian
atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive
neurodegenerative disorder. It is caused by the
expansion of a CAG repeat in the DRPLA gene on
chromosome 12p. This results in an extended
polyglutamine region in atrophin-1, that is thought to
confer toxicity to the protein, possibly through
altering its interactions with other proteins. The
expansion of a CAG repeat is also the underlying defect
in six other neurodegenerative disorders, including
Huntington's disease. One interaction of expanded
polyglutamine repeats that is thought to be pathogenic
is that with the short glutamine repeat in the
transcriptional coactivator CREB binding protein, CBP.
This interaction draws CBP away from its usual nuclear
location to the expanded polyglutamine repeat protein
aggregates that are characteristic of the polyglutamine
neurodegenerative disorders. This interferes with
CBP-mediated transcription and causes cytotoxicity.
Length = 979
Score = 39.7 bits (92), Expect = 3e-04
Identities = 17/41 (41%), Positives = 28/41 (68%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
K++EE E ++E E++ EE E+E+++E+E E E E E E
Sbjct: 579 KKREEAVEKAKREAEQKAREEREREKEKEKEREREREREAE 619
Score = 39.3 bits (91), Expect = 5e-04
Identities = 17/48 (35%), Positives = 29/48 (60%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
K +K EE ++ + E E++ EE + E+E+E+E E E E E E ++
Sbjct: 576 KLAKKREEAVEKAKREAEQKAREEREREKEKEKEREREREREAERAAK 623
Score = 34.3 bits (78), Expect = 0.022
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
K K E ++ +E E E+E+E+E+E + E E E + +SR+
Sbjct: 587 KAKREAEQKAREEREREKEKEKEREREREREAERAAKASSSSHESRM 633
>gnl|CDD|218561 pfam05340, DUF740, Protein of unknown function (DUF740). This
family consists of several uncharacterized plant
proteins of unknown function.
Length = 565
Score = 39.6 bits (92), Expect = 3e-04
Identities = 21/47 (44%), Positives = 30/47 (63%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
I P EE+E+ E EE+EE E+E + +E+ EEEEEEE + +D
Sbjct: 134 IVPDLVLEEEEEVEMEEDEEYYEKEPGKVVDEKSEEEEEEELKTMKD 180
Score = 34.2 bits (78), Expect = 0.019
Identities = 19/40 (47%), Positives = 27/40 (67%)
Query: 119 DEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
D E+EEE E EE+EE E+E + +E+ EEEEEE+ +
Sbjct: 137 DLVLEEEEEVEMEEDEEYYEKEPGKVVDEKSEEEEEEELK 176
Score = 34.2 bits (78), Expect = 0.020
Identities = 20/44 (45%), Positives = 27/44 (61%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
KP + E+EE+ E EE EE E+E + +E+ EEEEEEE
Sbjct: 131 RKPIVPDLVLEEEEEVEMEEDEEYYEKEPGKVVDEKSEEEEEEE 174
Score = 28.5 bits (63), Expect = 1.7
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 138 EQEEEEEEEEEEEEEEEEDSRILI 161
+EEEE E EE+EE E++ ++
Sbjct: 140 LEEEEEVEMEEDEEYYEKEPGKVV 163
Score = 28.1 bits (62), Expect = 2.3
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEE-----EEEEEEEED 156
I P E + E + +EEEE + E++EE E+E +E+ EEEE+
Sbjct: 121 IAPPEIDPEPRKPIVPDLVLEEEEEVEMEEDEEYYEKEPGKVVDEKSEEEEE 172
Score = 26.5 bits (58), Expect = 9.0
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 137 EEQEEEEEEEEEEEEEEEEDSRIL 160
E+EEE E EE+EE E+E +++
Sbjct: 140 LEEEEEVEMEEDEEYYEKEPGKVV 163
>gnl|CDD|222792 PHA00435, PHA00435, capsid assembly protein.
Length = 306
Score = 39.4 bits (92), Expect = 3e-04
Identities = 23/44 (52%), Positives = 26/44 (59%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
P E+DE + E EEEE EE EE+EEEE EEE EE E
Sbjct: 60 PDPFGEDDEGRIEVRISEDGEEEEVEEGEEDEEEEGEEESEEFE 103
Score = 35.2 bits (81), Expect = 0.008
Identities = 21/43 (48%), Positives = 26/43 (60%)
Query: 118 EDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRIL 160
ED+E E E+ E+EE EE EE+EEEE EEE E+ L
Sbjct: 63 FGEDDEGRIEVRISEDGEEEEVEEGEEDEEEEGEEESEEFEPL 105
Score = 34.8 bits (80), Expect = 0.013
Identities = 20/40 (50%), Positives = 24/40 (60%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
E +E + E+ E+EE EE EE EEEE EEE EE E
Sbjct: 65 EDDEGRIEVRISEDGEEEEVEEGEEDEEEEGEEESEEFEP 104
Score = 34.4 bits (79), Expect = 0.014
Identities = 20/39 (51%), Positives = 21/39 (53%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEE 150
E E E EEEE EE EE EE+E EEE EE E
Sbjct: 66 DDEGRIEVRISEDGEEEEVEEGEEDEEEEGEEESEEFEP 104
Score = 34.4 bits (79), Expect = 0.014
Identities = 18/39 (46%), Positives = 23/39 (58%)
Query: 119 DEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
D E +E + E E+EE EE EE+EEEE EE+S
Sbjct: 61 DPFGEDDEGRIEVRISEDGEEEEVEEGEEDEEEEGEEES 99
Score = 32.9 bits (75), Expect = 0.049
Identities = 16/46 (34%), Positives = 21/46 (45%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+ + E++E E E EEEE EE EE+EEEE
Sbjct: 51 ETSDDPYGNPDPFGEDDEGRIEVRISEDGEEEEVEEGEEDEEEEGE 96
Score = 31.3 bits (71), Expect = 0.15
Identities = 19/39 (48%), Positives = 25/39 (64%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEE 148
++ E EE+E EE EE+EE+E EEE EE E + EE
Sbjct: 73 VRISEDGEEEEVEEGEEDEEEEGEEESEEFEPLGDTPEE 111
Score = 31.3 bits (71), Expect = 0.16
Identities = 19/35 (54%), Positives = 24/35 (68%)
Query: 120 EDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
ED E+EE EE EE+EE+E +EE EE E + EE
Sbjct: 77 EDGEEEEVEEGEEDEEEEGEEESEEFEPLGDTPEE 111
Score = 31.0 bits (70), Expect = 0.20
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+ E +D + E++E + E E+ EEEE EE EED
Sbjct: 48 AEPETSDDPYGNPDPFGEDDEGRIEVRISEDGEEEEVEEGEEDE 91
Score = 31.0 bits (70), Expect = 0.22
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
E ++ EE+E EE +E+EEE+ E+E EE E + EE
Sbjct: 72 EVRISEDGEEEEVEEGEEDEEEEGEEESEEFEPLGDTPEE 111
Score = 30.6 bits (69), Expect = 0.32
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
E ++ +EEE E+ EE+E+EE EEE EE E + EE
Sbjct: 72 EVRISEDGEEEEVEEGEEDEEEEGEEESEEFEPLGDTPEE 111
Score = 30.2 bits (68), Expect = 0.40
Identities = 22/44 (50%), Positives = 27/44 (61%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+E EE +EDEE+E EEE EE E + EE E E+ EE EE
Sbjct: 81 EEEVEEGEEDEEEEGEEESEEFEPLGDTPEELTEASEQLEEHEE 124
Score = 30.2 bits (68), Expect = 0.46
Identities = 21/44 (47%), Positives = 27/44 (61%)
Query: 117 EEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRIL 160
ED +EE+ EE E++EEEE EE+ EE E + EE E S L
Sbjct: 76 SEDGEEEEVEEGEEDEEEEGEEESEEFEPLGDTPEELTEASEQL 119
Score = 29.8 bits (67), Expect = 0.50
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+ E ++ E+ E E E+ EEEE EE EE+EE
Sbjct: 47 LAEPETSDDPYGNPDPFGEDDEGRIEVRISEDGEEEEVEEGEEDEE 92
Score = 27.9 bits (62), Expect = 2.6
Identities = 21/42 (50%), Positives = 26/42 (61%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
E+EE +E EE EEEE +EE EE E + EE E E+ EE
Sbjct: 80 EEEEVEEGEEDEEEEGEEESEEFEPLGDTPEELTEASEQLEE 121
Score = 27.5 bits (61), Expect = 3.1
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+ +D + E +E + E+ EEEE EE EE+E+
Sbjct: 50 PETSDDPYGNPDPFGEDDEGRIEVRISEDGEEEEVEEGEEDEEE 93
>gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein. CDC45 is an essential gene
required for initiation of DNA replication in S.
cerevisiae, forming a complex with MCM5/CDC46.
Homologues of CDC45 have been identified in human, mouse
and smut fungus among others.
Length = 583
Score = 39.2 bits (92), Expect = 4e-04
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
EE+ +E ++ + EE ++ +EE +EE+EE + E+D
Sbjct: 103 DGDIEEELQDEPRYDDAYRDLEEDDDDDEESDEEDEESSKSEDD 146
Score = 38.4 bits (90), Expect = 8e-04
Identities = 14/42 (33%), Positives = 29/42 (69%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
EEE +DE + ++ ++ EE+ ++ EE +EE+EE + E+++
Sbjct: 107 EEELQDEPRYDDAYRDLEEDDDDDEESDEEDEESSKSEDDED 148
Score = 37.3 bits (87), Expect = 0.002
Identities = 10/49 (20%), Positives = 33/49 (67%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
+ D +E+ +++EE +EE+E+ + E++E++++++++++ +R
Sbjct: 113 EPRYDDAYRDLEEDDDDDEESDEEDEESSKSEDDEDDDDDDDDDDIATR 161
Score = 37.3 bits (87), Expect = 0.002
Identities = 12/41 (29%), Positives = 25/41 (60%)
Query: 118 EDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
D +EE ++E ++ E++++++EE +EE+EE S
Sbjct: 104 GDIEEELQDEPRYDDAYRDLEEDDDDDEESDEEDEESSKSE 144
Score = 36.1 bits (84), Expect = 0.004
Identities = 12/43 (27%), Positives = 29/43 (67%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
E++D+DEE +EE+E+ + E +E +++++++++ E R
Sbjct: 125 EDDDDDEESDEEDEESSKSEDDEDDDDDDDDDDIATRERSLER 167
Score = 36.1 bits (84), Expect = 0.005
Identities = 9/43 (20%), Positives = 31/43 (72%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
+ +ED++ +EE ++E+EE + +++E++++++++++ R
Sbjct: 121 RDLEEDDDDDEESDEEDEESSKSEDDEDDDDDDDDDDIATRER 163
Score = 35.7 bits (83), Expect = 0.006
Identities = 10/48 (20%), Positives = 33/48 (68%)
Query: 109 MIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+ ++ D E+++++++E +EE EE + E++E+++++++++D
Sbjct: 110 LQDEPRYDDAYRDLEEDDDDDEESDEEDEESSKSEDDEDDDDDDDDDD 157
Score = 35.7 bits (83), Expect = 0.007
Identities = 11/45 (24%), Positives = 30/45 (66%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
E++++D++E EE+EE + E+ E+ ++++++++ E + R
Sbjct: 124 EEDDDDDEESDEEDEESSKSEDDEDDDDDDDDDDIATRERSLERR 168
Score = 35.3 bits (82), Expect = 0.009
Identities = 12/42 (28%), Positives = 24/42 (57%)
Query: 117 EEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
+ E+E Q+E + + EE ++++EE +EE+EE +
Sbjct: 104 GDIEEELQDEPRYDDAYRDLEEDDDDDEESDEEDEESSKSED 145
Score = 34.6 bits (80), Expect = 0.015
Identities = 13/46 (28%), Positives = 30/46 (65%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
EED+D+++E +EE EE + E+ E++++++++++ E S
Sbjct: 121 RDLEEDDDDDEESDEEDEESSKSEDDEDDDDDDDDDDIATRERSLE 166
Score = 31.9 bits (73), Expect = 0.14
Identities = 11/45 (24%), Positives = 26/45 (57%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
+ ++E+ DEE EE + E++E+ ++ +++++ E E R
Sbjct: 127 DDDDEESDEEDEESSKSEDDEDDDDDDDDDDIATRERSLERRRRR 171
>gnl|CDD|221250 pfam11831, Myb_Cef, pre-mRNA splicing factor component. This
family is a region of the Myb-Related Cdc5p/Cef1
proteins, in fungi, and is part of the pre-mRNA splicing
factor complex.
Length = 363
Score = 38.9 bits (91), Expect = 5e-04
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 111 KPK---EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
KPK E E +E+EE+ EE E+E EE+ +++ + EE +E+EE R
Sbjct: 140 KPKNEFELELPEEEEEEPEEMEEELEEDAADRDARKRAAEEAKEQEELRRR 190
>gnl|CDD|237284 PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase;
Reviewed.
Length = 460
Score = 38.8 bits (90), Expect = 6e-04
Identities = 6/42 (14%), Positives = 13/42 (30%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+ + + + EE + +E E E E+
Sbjct: 382 QAPAAHQVDAEAASAAPEEPAALASEAHDETEPEVPEKAAPI 423
Score = 37.7 bits (87), Expect = 0.001
Identities = 6/46 (13%), Positives = 15/46 (32%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+ + + + + + + EE E +E E E +
Sbjct: 373 REQPGDLAGQAPAAHQVDAEAASAAPEEPAALASEAHDETEPEVPE 418
Score = 37.7 bits (87), Expect = 0.001
Identities = 10/44 (22%), Positives = 15/44 (34%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
E+E+ + Q Q + E EE E +E E
Sbjct: 372 EREQPGDLAGQAPAAHQVDAEAASAAPEEPAALASEAHDETEPE 415
Score = 35.3 bits (81), Expect = 0.008
Identities = 8/42 (19%), Positives = 12/42 (28%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+ + E EE E +E E E E+
Sbjct: 380 AGQAPAAHQVDAEAASAAPEEPAALASEAHDETEPEVPEKAA 421
Score = 35.0 bits (80), Expect = 0.011
Identities = 9/47 (19%), Positives = 17/47 (36%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+P + + Q + E E+ E +E E E E+ +
Sbjct: 375 QPGDLAGQAPAAHQVDAEAASAAPEEPAALASEAHDETEPEVPEKAA 421
Score = 33.8 bits (77), Expect = 0.026
Identities = 7/43 (16%), Positives = 12/43 (27%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+ D + EE + E E E E+ +
Sbjct: 385 AAHQVDAEAASAAPEEPAALASEAHDETEPEVPEKAAPIPDPA 427
Score = 28.4 bits (63), Expect = 1.6
Identities = 5/39 (12%), Positives = 13/39 (33%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEE 152
E+ E +E E + ++ + + +E
Sbjct: 393 AASAAPEEPAALASEAHDETEPEVPEKAAPIPDPAKPDE 431
Score = 28.0 bits (62), Expect = 2.6
Identities = 5/36 (13%), Positives = 11/36 (30%)
Query: 122 EEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
EE E + + E+ + + + E
Sbjct: 364 EETSEADIEREQPGDLAGQAPAAHQVDAEAASAAPE 399
Score = 26.9 bits (59), Expect = 6.0
Identities = 8/41 (19%), Positives = 14/41 (34%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
E E +E E E E+ + + +E +D
Sbjct: 400 EPAALASEAHDETEPEVPEKAAPIPDPAKPDELAVAGPGDD 440
>gnl|CDD|222648 pfam14283, DUF4366, Domain of unknown function (DUF4366). This
family of proteins is found in bacteria and eukaryotes.
Proteins in this family are typically between 227 and
387 amino acids in length.
Length = 213
Score = 38.1 bits (89), Expect = 6e-04
Identities = 14/42 (33%), Positives = 15/42 (35%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
EEED E E E E E EEE E+ S
Sbjct: 115 EEEDAAAPTCSCCPVCSVNMTECTGPEPEPEPEPEEEPEKKS 156
Score = 32.7 bits (75), Expect = 0.044
Identities = 10/36 (27%), Positives = 23/36 (63%)
Query: 107 FWMIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEE 142
F KPK++E+ D++ +E + +E+EE++++
Sbjct: 178 FKFYKPKQQEKGAPDDDLDEYDYGDEDEEEDDEPPW 213
Score = 28.1 bits (63), Expect = 2.1
Identities = 16/79 (20%), Positives = 28/79 (35%), Gaps = 31/79 (39%)
Query: 109 MIKPKEKEEEDEDEEQEEEEE-------------------------------QEEEEEQE 137
M + E E E E +EE E+ QE+ +
Sbjct: 134 MTECTGPEPEPEPEPEEEPEKKSGMGPLLLVLAVALIGGGAYYYFKFYKPKQQEKGAPDD 193
Query: 138 EQEEEEEEEEEEEEEEEED 156
+ +E + +E+EEE++E
Sbjct: 194 DLDEYDYGDEDEEEDDEPP 212
Score = 26.9 bits (60), Expect = 4.1
Identities = 10/28 (35%), Positives = 11/28 (39%)
Query: 123 EQEEEEEQEEEEEQEEQEEEEEEEEEEE 150
E E E Q E + E E EEE
Sbjct: 26 EPEPEVPQTEATDPSEVVVETVTEEEGG 53
Score = 26.1 bits (58), Expect = 8.3
Identities = 10/26 (38%), Positives = 11/26 (42%)
Query: 129 EQEEEEEQEEQEEEEEEEEEEEEEEE 154
E E E Q E + E E EEE
Sbjct: 26 EPEPEVPQTEATDPSEVVVETVTEEE 51
>gnl|CDD|237622 PRK14140, PRK14140, heat shock protein GrpE; Provisional.
Length = 191
Score = 38.1 bits (89), Expect = 7e-04
Identities = 20/44 (45%), Positives = 28/44 (63%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
E+ ++ EE+ EE E EE E E +EE EEE E E +EE ++I
Sbjct: 3 EKNEQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAKI 46
Score = 36.1 bits (84), Expect = 0.003
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
EK E+ E+E +E E E+ E+E EE+ EEE E E +EE+
Sbjct: 3 EKNEQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQA 44
Score = 35.4 bits (82), Expect = 0.006
Identities = 16/45 (35%), Positives = 28/45 (62%)
Query: 109 MIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
M + E+ EE+ +E + EE ++E EE+ +EE E E +EE+ +
Sbjct: 1 MEEKNEQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAK 45
Score = 33.4 bits (77), Expect = 0.029
Identities = 20/45 (44%), Positives = 27/45 (60%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
K ++ EEE E+ E EE E E EEE E+E E E +EE+ + E
Sbjct: 4 KNEQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAKIAE 48
Score = 32.7 bits (75), Expect = 0.046
Identities = 17/45 (37%), Positives = 27/45 (60%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+ E+E E+ + E+ E+E EEE +EE E E +EE+ + E E
Sbjct: 6 EQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAKIAELE 50
Score = 32.7 bits (75), Expect = 0.050
Identities = 17/46 (36%), Positives = 27/46 (58%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+ +E+ EE E EE E+E +EE E+E + E +EE+ + E E
Sbjct: 7 QVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAKIAELEAK 52
Score = 32.3 bits (74), Expect = 0.073
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 123 EQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+E+ E+ EEE E+ E EE E+E EEE EEE
Sbjct: 1 MEEKNEQVEEEVEETEVEEAVEDEVEEETVEEESE 35
Score = 31.9 bits (73), Expect = 0.097
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 122 EEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
EE+ E+ E+E EE + E+ E+E EEE EEE E
Sbjct: 2 EEKNEQVEEEVEETEVEEAVEDEVEEETVEEESEAE 37
Score = 31.5 bits (72), Expect = 0.10
Identities = 17/43 (39%), Positives = 26/43 (60%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+E E E+ E++ EEE EEE E E +EE+ + E E + +E
Sbjct: 13 EETEVEEAVEDEVEEETVEEESEAELLDEEQAKIAELEAKLDE 55
Score = 30.7 bits (70), Expect = 0.24
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 120 EDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
E++ ++ EEE EE E +E E+E EEE EEE E E
Sbjct: 2 EEKNEQVEEEVEETEVEEAVEDEVEEETVEEESEAE 37
Score = 30.4 bits (69), Expect = 0.27
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
E EE EDE +EE E+E E E ++E+ + E E + +E E+
Sbjct: 16 EVEEAVEDEVEEETVEEESEAELLDEEQAKIAELEAKLDELEER 59
Score = 30.0 bits (68), Expect = 0.44
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 109 MIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
+ + E+ E +E E E EEE EEE + E +EE+ + E E +
Sbjct: 8 VEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAKIAELEAK 52
Score = 28.8 bits (65), Expect = 1.1
Identities = 20/46 (43%), Positives = 26/46 (56%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
E+ EDE EE+ EEE E E EEQ + E E + +E EE R+
Sbjct: 18 EEAVEDEVEEETVEEESEAELLDEEQAKIAELEAKLDELEERYLRL 63
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional.
Length = 509
Score = 38.4 bits (90), Expect = 8e-04
Identities = 7/46 (15%), Positives = 34/46 (73%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+ +++D+ ++ + +++ ++E++ E+ ++++ ++E+EE++E ++
Sbjct: 132 DDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKE 177
Score = 37.7 bits (88), Expect = 0.001
Identities = 12/47 (25%), Positives = 34/47 (72%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRIL 160
+ +E+D++++ +++ + E+EE++E +E E+ ++++ +E+DS L
Sbjct: 151 DDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDEDDSEAL 197
Score = 37.7 bits (88), Expect = 0.001
Identities = 8/45 (17%), Positives = 34/45 (75%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+ +++ +D++ +++++ E+++E ++ ++ ++E+EE++E +E +
Sbjct: 136 DDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEK 180
Score = 37.7 bits (88), Expect = 0.001
Identities = 11/44 (25%), Positives = 33/44 (75%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+ + +D+D + ++++E ++E++ ++ ++E+EE++E +E E+ S
Sbjct: 139 DDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLS 182
Score = 37.7 bits (88), Expect = 0.002
Identities = 8/45 (17%), Positives = 32/45 (71%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+ E++DED++ ++ ++++EE+++ ++ E+ ++++ +E++
Sbjct: 150 DDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDEDDS 194
Score = 37.3 bits (87), Expect = 0.002
Identities = 9/44 (20%), Positives = 33/44 (75%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+ +++DED++++++++ ++E++E++E +E E+ ++++ D
Sbjct: 148 DDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDE 191
Score = 37.3 bits (87), Expect = 0.002
Identities = 11/45 (24%), Positives = 32/45 (71%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
E ++ED+D++ ++E++E++E +E ++ ++++ +E++ E R
Sbjct: 154 EDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDEDDSEALR 198
Score = 36.9 bits (86), Expect = 0.003
Identities = 8/49 (16%), Positives = 34/49 (69%)
Query: 109 MIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+ + +++D+DE+ +E+++ ++ ++++E+++E +E E+ ++++
Sbjct: 141 DLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVW 189
Score = 36.5 bits (85), Expect = 0.004
Identities = 9/45 (20%), Positives = 33/45 (73%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+ ++ D+D+ +++++++++E+ ++ + ++E+EE++E +E E
Sbjct: 137 DDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKL 181
Score = 36.5 bits (85), Expect = 0.004
Identities = 8/47 (17%), Positives = 33/47 (70%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+ +++D+D + ++ ++ +++E+ +E +++++ ++E+EE++E
Sbjct: 130 ADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAK 176
Score = 35.7 bits (83), Expect = 0.006
Identities = 6/47 (12%), Positives = 39/47 (82%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+ + +++D+D++ ++++ ++++++++ E++++++ ++E+EE++++
Sbjct: 129 QADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEA 175
Score = 35.0 bits (81), Expect = 0.010
Identities = 12/44 (27%), Positives = 32/44 (72%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+ ++ED+DE+ ++++ +E+EE++E +E E+ ++++ +ED
Sbjct: 150 DDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDEDD 193
Score = 34.6 bits (80), Expect = 0.017
Identities = 6/44 (13%), Positives = 33/44 (75%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+ +++++D+E +++++ ++E+E++++ +E E+ ++++ ++
Sbjct: 149 DDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDED 192
Score = 34.6 bits (80), Expect = 0.017
Identities = 7/46 (15%), Positives = 35/46 (76%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+ +++D+D+ +++ + ++++E +++++++++ ++E+EE++E
Sbjct: 131 DDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAK 176
Score = 34.6 bits (80), Expect = 0.018
Identities = 9/47 (19%), Positives = 32/47 (68%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
++ +E+D+D++ ++E+E+++E ++ E+ ++++ +E++ E
Sbjct: 152 DDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDEDDSEALR 198
Score = 34.2 bits (79), Expect = 0.022
Identities = 9/45 (20%), Positives = 32/45 (71%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
+ ++D+ ++ +++E+ +E+++ ++ ++E+EE++E +E E+
Sbjct: 140 DDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDD 184
Score = 33.0 bits (76), Expect = 0.058
Identities = 10/45 (22%), Positives = 31/45 (68%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
+++++D+D + E+EE++E +E ++ ++++ +E++ E +R
Sbjct: 157 DEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDEDDSEALRQAR 201
Score = 31.9 bits (73), Expect = 0.13
Identities = 7/47 (14%), Positives = 35/47 (74%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+ + +++D+D++ + +++ ++++ +E ++E++++++ ++E+EE
Sbjct: 126 VLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEK 172
Score = 27.3 bits (61), Expect = 4.1
Identities = 7/44 (15%), Positives = 27/44 (61%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+ ++ D+++E+++E ++ E+ ++ +E++ E + +D+
Sbjct: 161 DDDDVDDEDEEKKEAKELEKLSDDDDFVWDEDDSEALRQARKDA 204
>gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D. This
model represents one of two ATPase subunits of the
trimeric magnesium chelatase responsible for insertion
of magnesium ion into protoporphyrin IX. This is an
essential step in the biosynthesis of both chlorophyll
and bacteriochlorophyll. This subunit is found in green
plants, photosynthetic algae, cyanobacteria and other
photosynthetic bacteria. Unlike subunit I (TIGR02030),
this subunit is not found in archaea [Biosynthesis of
cofactors, prosthetic groups, and carriers, Chlorophyll
and bacteriochlorphyll].
Length = 589
Score = 38.3 bits (89), Expect = 0.001
Identities = 8/47 (17%), Positives = 21/47 (44%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+ P+ + + + E E EE+ +E ++ + ++ EE +
Sbjct: 259 LLPRATRLPEPEPQPPPPPPPPEPPEPEEEPDEPDQTDPDDGEETDQ 305
Score = 36.3 bits (84), Expect = 0.004
Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 117 EEDEDEEQEE---EEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
E E + E E EEE +E ++ + ++ EE ++ E+
Sbjct: 267 PEPEPQPPPPPPPPEPPEPEEEPDEPDQTDPDDGEETDQIPEE 309
Score = 34.4 bits (79), Expect = 0.018
Identities = 11/43 (25%), Positives = 22/43 (51%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
P+ + + E E EEE ++ +Q + ++ EE ++ EE
Sbjct: 267 PEPEPQPPPPPPPPEPPEPEEEPDEPDQTDPDDGEETDQIPEE 309
Score = 34.4 bits (79), Expect = 0.020
Identities = 10/40 (25%), Positives = 18/40 (45%)
Query: 120 EDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
E E Q E + E+E +E ++ + ++ EE D
Sbjct: 268 EPEPQPPPPPPPPEPPEPEEEPDEPDQTDPDDGEETDQIP 307
Score = 33.2 bits (76), Expect = 0.039
Identities = 8/41 (19%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 123 EQEEEEEQEE--EEEQEEQEEEEEEEEEEEEEEEEDSRILI 161
+ E + E E EEE +E ++ + ++ E++ +
Sbjct: 267 PEPEPQPPPPPPPPEPPEPEEEPDEPDQTDPDDGEETDQIP 307
Score = 32.9 bits (75), Expect = 0.053
Identities = 7/41 (17%), Positives = 17/41 (41%)
Query: 121 DEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRILI 161
E E + + + EEE +E ++ + ++ + I
Sbjct: 266 LPEPEPQPPPPPPPPEPPEPEEEPDEPDQTDPDDGEETDQI 306
Score = 32.9 bits (75), Expect = 0.064
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRIL 160
P E E EE+ +E +Q + ++ EE ++ EE + E + IL
Sbjct: 276 PPPPPEPPEPEEEPDEPDQTDPDDGEETDQIPEELMFDAVEADLPDNIL 324
>gnl|CDD|221490 pfam12253, CAF1A, Chromatin assembly factor 1 subunit A. The CAF-1
or chromatin assembly factor-1 consists of three
subunits, and this is the first, or A. The A domain is
uniquely required for the progression of S phase in
mouse cells, independent of its ability to promote
histone deposition but dependent on its ability to
interact with HP1 - heterochromatin protein 1-rich
heterochromatin domains next to centromeres that are
crucial for chromosome segregation during mitosis. This
HP1-CAF-1 interaction module functions as a built-in
replication control for heterochromatin, which, like a
control barrier, has an impact on S-phase progression in
addition to DNA-based checkpoints.
Length = 76
Score = 35.7 bits (83), Expect = 0.001
Identities = 17/46 (36%), Positives = 30/46 (65%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
P ++ D + + + E EEEEE E+ E E+EE+EEE+++++ D
Sbjct: 29 NPLSQDLPGLDYDYDSDAEWEEEEEGEDLESEDEEDEEEDDDDDMD 74
>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional.
Length = 413
Score = 38.0 bits (88), Expect = 0.001
Identities = 12/46 (26%), Positives = 15/46 (32%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
P E + +Q Q E+ EE E E E DS
Sbjct: 144 PGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDS 189
Score = 34.6 bits (79), Expect = 0.014
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
P + DE E + ++ Q+ E E+E E E E
Sbjct: 202 PPPQSPPDEPGE-PQSPTPQQAPSPNTQQAVEHEDEPTEPEREGP 245
Score = 33.4 bits (76), Expect = 0.037
Identities = 9/46 (19%), Positives = 12/46 (26%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
P E E +Q + E+ EE E S
Sbjct: 138 PSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTS 183
Score = 32.6 bits (74), Expect = 0.066
Identities = 9/45 (20%), Positives = 16/45 (35%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
+E E + ++ +Q + E+E E E E R
Sbjct: 207 PPDEPGEPQSPTPQQAPSPNTQQAVEHEDEPTEPEREGPPFPGHR 251
Score = 32.2 bits (73), Expect = 0.085
Identities = 8/43 (18%), Positives = 13/43 (30%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
P E + Q+ + E +E E E E +
Sbjct: 149 PAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPG 191
Score = 32.2 bits (73), Expect = 0.086
Identities = 4/45 (8%), Positives = 8/45 (17%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
P E E ++ + E+
Sbjct: 131 PASHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSP 175
Score = 32.2 bits (73), Expect = 0.10
Identities = 8/44 (18%), Positives = 15/44 (34%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
P E +++ + E+ EE E E E + +
Sbjct: 151 PPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQ 194
Score = 31.9 bits (72), Expect = 0.11
Identities = 8/47 (17%), Positives = 14/47 (29%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
+E E + Q+ ++ E E+E E R
Sbjct: 196 ETPTSSPPPQSPPDEPGEPQSPTPQQAPSPNTQQAVEHEDEPTEPER 242
Score = 31.9 bits (72), Expect = 0.12
Identities = 6/45 (13%), Positives = 6/45 (13%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
P EE E E E
Sbjct: 107 PSGSAEELASGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAP 151
Score = 31.9 bits (72), Expect = 0.13
Identities = 7/43 (16%), Positives = 13/43 (30%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
E + ++ + E+ EE E E E +
Sbjct: 149 PAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPG 191
Score = 31.9 bits (72), Expect = 0.13
Identities = 7/42 (16%), Positives = 16/42 (38%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
P ++ E + ++ ++ E ++E E E E
Sbjct: 207 PPDEPGEPQSPTPQQAPSPNTQQAVEHEDEPTEPEREGPPFP 248
Score = 31.9 bits (72), Expect = 0.14
Identities = 8/44 (18%), Positives = 11/44 (25%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
P E E Q+ + E+ EE E
Sbjct: 137 PPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEP 180
Score = 31.5 bits (71), Expect = 0.15
Identities = 7/45 (15%), Positives = 12/45 (26%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
P + + ++ Q E+ EE E E
Sbjct: 141 PSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEP 185
Score = 31.1 bits (70), Expect = 0.20
Identities = 6/44 (13%), Positives = 14/44 (31%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
P+ E E + + + Q +E E + ++
Sbjct: 178 PEPPTSEPEPDSPGPPQSETPTSSPPPQSPPDEPGEPQSPTPQQ 221
Score = 31.1 bits (70), Expect = 0.23
Identities = 6/42 (14%), Positives = 9/42 (21%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
E E Q+ + E+ EE
Sbjct: 136 PPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEE 177
Score = 30.7 bits (69), Expect = 0.28
Identities = 4/44 (9%), Positives = 5/44 (11%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
EE + E S
Sbjct: 99 SVGSPTPSPSGSAEELASGLSPENTSGSSPESPASHSPPPSPPS 142
Score = 30.7 bits (69), Expect = 0.31
Identities = 9/44 (20%), Positives = 10/44 (22%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
EKEE + E EE E S
Sbjct: 83 EKEERGQGGPSGSGSESVGSPTPSPSGSAEELASGLSPENTSGS 126
Score = 30.3 bits (68), Expect = 0.41
Identities = 4/41 (9%), Positives = 5/41 (12%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
E+ E E E
Sbjct: 117 GLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNP 157
Score = 30.3 bits (68), Expect = 0.46
Identities = 5/43 (11%), Positives = 5/43 (11%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
E EE E E
Sbjct: 95 SGSESVGSPTPSPSGSAEELASGLSPENTSGSSPESPASHSPP 137
Score = 29.9 bits (67), Expect = 0.63
Identities = 10/44 (22%), Positives = 14/44 (31%), Gaps = 1/44 (2%)
Query: 114 EKEEEDEDEEQEE-EEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+ ED EE E E E + Q E + +E
Sbjct: 168 QPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPPDEP 211
Score = 29.6 bits (66), Expect = 0.67
Identities = 7/44 (15%), Positives = 14/44 (31%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
P ++ + E+ EE E + E + + E
Sbjct: 157 PSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTS 200
Score = 29.6 bits (66), Expect = 0.77
Identities = 6/44 (13%), Positives = 11/44 (25%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
P + E ++ + E+ EE E
Sbjct: 136 PPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPE 179
Score = 29.2 bits (65), Expect = 0.94
Identities = 4/42 (9%), Positives = 5/42 (11%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+ EE E E
Sbjct: 93 SGSGSESVGSPTPSPSGSAEELASGLSPENTSGSSPESPASH 134
Score = 29.2 bits (65), Expect = 0.95
Identities = 3/43 (6%), Positives = 4/43 (9%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
E + E E
Sbjct: 119 SPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQ 161
Score = 29.2 bits (65), Expect = 1.0
Identities = 8/44 (18%), Positives = 16/44 (36%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
P+ + Q +E E + Q+ ++ E E+E
Sbjct: 193 PQSETPTSSPPPQSPPDEPGEPQSPTPQQAPSPNTQQAVEHEDE 236
Score = 28.8 bits (64), Expect = 1.2
Identities = 7/44 (15%), Positives = 13/44 (29%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
P + E D + E Q +E E + ++
Sbjct: 181 PTSEPEPDSPGPPQSETPTSSPPPQSPPDEPGEPQSPTPQQAPS 224
Score = 28.8 bits (64), Expect = 1.3
Identities = 4/43 (9%), Positives = 9/43 (20%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
E E ++ + E+ E+
Sbjct: 135 SPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEE 177
Score = 28.8 bits (64), Expect = 1.4
Identities = 3/42 (7%), Positives = 4/42 (9%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
E+ E E
Sbjct: 103 PTPSPSGSAEELASGLSPENTSGSSPESPASHSPPPSPPSHP 144
Score = 28.4 bits (63), Expect = 1.6
Identities = 9/42 (21%), Positives = 14/42 (33%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
++ Q E+ EE E E E + + E S
Sbjct: 160 NQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSS 201
Score = 28.4 bits (63), Expect = 1.7
Identities = 9/45 (20%), Positives = 15/45 (33%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+ + + D E EE E+EE+ + E S
Sbjct: 64 QGHRQTESDTETAEESRHGEKEERGQGGPSGSGSESVGSPTPSPS 108
Score = 28.4 bits (63), Expect = 1.8
Identities = 3/43 (6%), Positives = 8/43 (18%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
E E ++ + E+ +
Sbjct: 134 HSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPE 176
Score = 28.4 bits (63), Expect = 2.0
Identities = 7/44 (15%), Positives = 13/44 (29%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
P + ++ EE E E E + + E +
Sbjct: 163 PSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQS 206
Score = 28.0 bits (62), Expect = 2.2
Identities = 4/43 (9%), Positives = 4/43 (9%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
EE E E
Sbjct: 101 GSPTPSPSGSAEELASGLSPENTSGSSPESPASHSPPPSPPSH 143
Score = 27.6 bits (61), Expect = 3.7
Identities = 10/47 (21%), Positives = 16/47 (34%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
KP + EQ + + + E EE E+EE +
Sbjct: 45 KPAPPAPTTSGPQVRAVAEQGHRQTESDTETAEESRHGEKEERGQGG 91
Score = 27.2 bits (60), Expect = 3.9
Identities = 6/44 (13%), Positives = 8/44 (18%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
++E E EE E S
Sbjct: 84 KEERGQGGPSGSGSESVGSPTPSPSGSAEELASGLSPENTSGSS 127
Score = 27.2 bits (60), Expect = 4.2
Identities = 6/43 (13%), Positives = 14/43 (32%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
P ++ +E E E E + + + + +E
Sbjct: 169 PSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPPDEP 211
Score = 27.2 bits (60), Expect = 4.3
Identities = 7/37 (18%), Positives = 14/37 (37%)
Query: 121 DEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
++ + E E E+ E+EE + +S
Sbjct: 63 EQGHRQTESDTETAEESRHGEKEERGQGGPSGSGSES 99
Score = 27.2 bits (60), Expect = 4.5
Identities = 6/41 (14%), Positives = 6/41 (14%)
Query: 117 EEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
E EE E E S
Sbjct: 95 SGSESVGSPTPSPSGSAEELASGLSPENTSGSSPESPASHS 135
Score = 26.9 bits (59), Expect = 5.7
Identities = 6/43 (13%), Positives = 8/43 (18%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
KE+ + E EE E
Sbjct: 84 KEERGQGGPSGSGSESVGSPTPSPSGSAEELASGLSPENTSGS 126
Score = 26.9 bits (59), Expect = 6.4
Identities = 6/41 (14%), Positives = 9/41 (21%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
E E Q E + +E E +
Sbjct: 180 PPTSEPEPDSPGPPQSETPTSSPPPQSPPDEPGEPQSPTPQ 220
Score = 26.5 bits (58), Expect = 7.2
Identities = 8/45 (17%), Positives = 13/45 (28%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
K + E+ + E + E EE E+E
Sbjct: 41 ARAAKPAPPAPTTSGPQVRAVAEQGHRQTESDTETAEESRHGEKE 85
Score = 26.5 bits (58), Expect = 8.0
Identities = 10/40 (25%), Positives = 14/40 (35%)
Query: 118 EDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
E + E + E EE E+EE + E S
Sbjct: 63 EQGHRQTESDTETAEESRHGEKEERGQGGPSGSGSESVGS 102
Score = 26.5 bits (58), Expect = 8.4
Identities = 8/44 (18%), Positives = 18/44 (40%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
P+ + ++ Q E + + EE + ++EE + E
Sbjct: 56 PQVRAVAEQGHRQTESDTETAEESRHGEKEERGQGGPSGSGSES 99
>gnl|CDD|145949 pfam03066, Nucleoplasmin, Nucleoplasmin. Nucleoplasmins are also
known as chromatin decondensation proteins. They bind to
core histones and transfer DNA to them in a reaction
that requires ATP. This is thought to play a role in the
assembly of regular nucleosomal arrays.
Length = 146
Score = 36.9 bits (86), Expect = 0.001
Identities = 14/32 (43%), Positives = 29/32 (90%)
Query: 126 EEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
EE++ +++E++E+EE++EE+++E+E EEE+S
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEES 140
Score = 36.1 bits (84), Expect = 0.002
Identities = 16/31 (51%), Positives = 27/31 (87%)
Query: 125 EEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
EE+E +++EE EE+E++EE+++E+E EEEE
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 35.8 bits (83), Expect = 0.003
Identities = 15/31 (48%), Positives = 26/31 (83%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEE 144
+E+E +D+E++EEEE +EE++ E++ EEEE
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 34.6 bits (80), Expect = 0.007
Identities = 16/31 (51%), Positives = 26/31 (83%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEE 146
EEDE ++ EE+EE+E++EE ++++E EEEE
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 34.6 bits (80), Expect = 0.007
Identities = 16/30 (53%), Positives = 25/30 (83%)
Query: 120 EDEEQEEEEEQEEEEEQEEQEEEEEEEEEE 149
E++E +++EE EEEE+ EE ++E+E EEEE
Sbjct: 110 EEDESDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 34.6 bits (80), Expect = 0.007
Identities = 15/31 (48%), Positives = 26/31 (83%)
Query: 123 EQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
+E+E + +EE+E+EE +EE+++E+E EEEE
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 34.2 bits (79), Expect = 0.009
Identities = 15/31 (48%), Positives = 26/31 (83%)
Query: 122 EEQEEEEEQEEEEEQEEQEEEEEEEEEEEEE 152
E++E ++ EE+EE+E+ EE+++E+E EEEE
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 33.1 bits (76), Expect = 0.023
Identities = 13/31 (41%), Positives = 26/31 (83%)
Query: 117 EEDEDEEQEEEEEQEEEEEQEEQEEEEEEEE 147
E+++ + +EE+E+EE++E+++ E+E EEEE
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 33.1 bits (76), Expect = 0.027
Identities = 13/30 (43%), Positives = 26/30 (86%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEE 142
+E E +D++E++EEE+++E+++E E +EEE
Sbjct: 110 EEDESDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 32.3 bits (74), Expect = 0.049
Identities = 12/33 (36%), Positives = 25/33 (75%)
Query: 124 QEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
Q +E+E + +E++EEEE++EE+++E+E +
Sbjct: 104 QHLVASEEDESDDDEEDEEEEDDEEDDDEDESE 136
Score = 28.1 bits (63), Expect = 1.5
Identities = 11/28 (39%), Positives = 21/28 (75%)
Query: 130 QEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
Q +E++ +++EE+EEEE++EE+D
Sbjct: 104 QHLVASEEDESDDDEEDEEEEDDEEDDD 131
>gnl|CDD|235549 PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated.
Length = 619
Score = 37.9 bits (89), Expect = 0.001
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 117 EEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRIL 160
D + E++ E EE ++ E+EEEEE+E ++ D L
Sbjct: 173 FVDPNAEEDPAHVGSELEELDDDEDEEEEEDENDDSLAADESEL 216
Score = 35.2 bits (82), Expect = 0.010
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 121 DEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
D + E++ E EE +++E+EEEEE+E D
Sbjct: 171 DGFVDPNAEEDPAHVGSELEELDDDEDEEEEEDENDD 207
Score = 34.4 bits (80), Expect = 0.020
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 119 DEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRILI 161
D EE+ E +E ++E+EEEEE+E ++ +
Sbjct: 173 FVDPNAEEDPAHVGSELEELDDDEDEEEEEDENDDSLAADESE 215
Score = 34.4 bits (80), Expect = 0.020
Identities = 11/41 (26%), Positives = 23/41 (56%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+ED E +E +++++E+EEE+E ++ +E E
Sbjct: 176 PNAEEDPAHVGSELEELDDDEDEEEEEDENDDSLAADESEL 216
Score = 34.0 bits (79), Expect = 0.023
Identities = 11/43 (25%), Positives = 22/43 (51%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
+ + +E+ + EE + +E EEEEE+E ++ +E
Sbjct: 174 VDPNAEEDPAHVGSELEELDDDEDEEEEEDENDDSLAADESEL 216
Score = 34.0 bits (79), Expect = 0.026
Identities = 12/43 (27%), Positives = 24/43 (55%)
Query: 115 KEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+E D + EE+ + E+ +++E+EEEEE+E ++
Sbjct: 167 RELIDGFVDPNAEEDPAHVGSELEELDDDEDEEEEEDENDDSL 209
Score = 33.6 bits (78), Expect = 0.031
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
+ EE E EE ++++EEEEE+E ++ ++S +
Sbjct: 173 FVDPNAEEDPAHVGSELEELDDDEDEEEEEDENDDSLAADESEL 216
Score = 33.6 bits (78), Expect = 0.034
Identities = 11/42 (26%), Positives = 22/42 (52%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+ E++ E EE ++ E++EEEE+E ++ +E
Sbjct: 173 FVDPNAEEDPAHVGSELEELDDDEDEEEEEDENDDSLAADES 214
Score = 32.1 bits (74), Expect = 0.096
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
EED E EE +++E++EE+E+E ++ +E E
Sbjct: 176 PNAEEDPAHVGSELEELDDDEDEEEEEDENDDSLAADESE 215
Score = 32.1 bits (74), Expect = 0.12
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
P +E+ + EE + +E+EE+EE E ++ +E E E+
Sbjct: 176 PNAEEDPAHVGSELEELDDDEDEEEEEDENDDSLAADESELPEK 219
Score = 29.8 bits (68), Expect = 0.67
Identities = 11/38 (28%), Positives = 15/38 (39%)
Query: 117 EEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
EE D + E E + + +E EEE E E
Sbjct: 61 EEAPDADDLLLAENEADAQTDEDAEEEAAAALSSVESE 98
>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha
subunit (TFIIF-alpha). Transcription initiation factor
IIF, alpha subunit (TFIIF-alpha) or RNA polymerase
II-associating protein 74 (RAP74) is the large subunit
of transcription factor IIF (TFIIF), which is essential
for accurate initiation and stimulates elongation by RNA
polymerase II.
Length = 528
Score = 37.6 bits (87), Expect = 0.001
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
EE ED+ E + E E+ E+ EE EEE+ EEE +
Sbjct: 293 SGNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSK 336
Score = 36.9 bits (85), Expect = 0.002
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
D E+ E++ E + E E++E+ EE EEE+ EE+
Sbjct: 291 SASGNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEG 332
Score = 36.1 bits (83), Expect = 0.005
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
++ EE+E++ E + E +++E+ EE EEE+ EEE
Sbjct: 290 SSASGNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEG 332
Score = 36.1 bits (83), Expect = 0.006
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+ E+ +++ E + E EQ+E EE EEE+ EEE
Sbjct: 294 GNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKK 337
Score = 35.3 bits (81), Expect = 0.009
Identities = 12/45 (26%), Positives = 28/45 (62%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
P+E+E++ E + E +++E+ +E +EE+ EEE ++ ++
Sbjct: 297 PEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKL 341
Score = 35.3 bits (81), Expect = 0.010
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
D +E +++ + + + EQ+E+ EE EEE+ EEE
Sbjct: 291 SASGNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGG 333
Score = 34.9 bits (80), Expect = 0.013
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+ + EE E++ E + E E++E+ EE EEE+ +
Sbjct: 289 DSSASGNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEE 330
Score = 34.9 bits (80), Expect = 0.013
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
+ E+ E + E + E E+ E+ EE EEE+ EEE S+
Sbjct: 294 GNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSK 336
Score = 33.4 bits (76), Expect = 0.039
Identities = 10/38 (26%), Positives = 21/38 (55%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEE 148
K + + EQ+E+ E+ EEE+ EE+ ++ ++
Sbjct: 303 KLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKK 340
Score = 33.0 bits (75), Expect = 0.053
Identities = 9/38 (23%), Positives = 19/38 (50%)
Query: 119 DEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+ + E+ E++ E + E E++E+ EE E+
Sbjct: 288 SDSSASGNDPEEREDKLSPEIPAKPEIEQDEDSEESEE 325
Score = 31.1 bits (70), Expect = 0.23
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
E EED + EE E + E + E E++E+ E+S
Sbjct: 280 EGREEDYISDSSASGNDPEEREDKLSPEIPAKPEIEQDEDSEES 323
Score = 31.1 bits (70), Expect = 0.27
Identities = 10/44 (22%), Positives = 21/44 (47%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
K+ + +D+ E + + ++E +EE + + EE ED
Sbjct: 259 KKGKRGGDDDADEYDSDDGDDEGREEDYISDSSASGNDPEERED 302
Score = 30.3 bits (68), Expect = 0.41
Identities = 14/48 (29%), Positives = 29/48 (60%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
I K + E+DED E+ EEE+ EEE ++ ++ ++ + ++ ++D
Sbjct: 308 IPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLKGKKNGLDKDD 355
>gnl|CDD|220102 pfam09073, BUD22, BUD22. BUD22 has been shown in yeast to be a
nuclear protein involved in bud-site selection. It plays
a role in positioning the proximal bud pole signal. More
recently it has been shown to be involved in ribosome
biogenesis.
Length = 424
Score = 37.5 bits (87), Expect = 0.001
Identities = 18/44 (40%), Positives = 31/44 (70%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
K++ +E D++ EEE E E+E + EE E++ ++EEEE+ + ED
Sbjct: 160 KKEAKESSDKDDEEESESEDESKSEESAEDDSDDEEEEDSDSED 203
Score = 36.7 bits (85), Expect = 0.003
Identities = 17/47 (36%), Positives = 33/47 (70%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
K +K ++ E +E +++++EE E ++E + EE E++ ++EEEEDS
Sbjct: 153 KKTKKSKKKEAKESSDKDDEEESESEDESKSEESAEDDSDDEEEEDS 199
Score = 36.4 bits (84), Expect = 0.004
Identities = 16/46 (34%), Positives = 31/46 (67%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
K +K+E E ++++EEE E E+E + +E E++ ++EEEE+ +
Sbjct: 156 KKSKKKEAKESSDKDDEEESESEDESKSEESAEDDSDDEEEEDSDS 201
Score = 32.9 bits (75), Expect = 0.063
Identities = 13/46 (28%), Positives = 31/46 (67%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
K K K++ + +++E +E ++++E+E + E+E + EE E++ +D
Sbjct: 148 KGKAKKKTKKSKKKEAKESSDKDDEEESESEDESKSEESAEDDSDD 193
Score = 32.1 bits (73), Expect = 0.10
Identities = 13/40 (32%), Positives = 25/40 (62%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEE 150
K ++++E+ E E+E + EE E + +EEEE+ + E+
Sbjct: 164 KESSDKDDEEESESEDESKSEESAEDDSDDEEEEDSDSED 203
Score = 31.7 bits (72), Expect = 0.13
Identities = 12/49 (24%), Positives = 28/49 (57%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
+K + + ++ +++E +E +++++EE E E+E + EE ED
Sbjct: 143 ETKAKKGKAKKKTKKSKKKEAKESSDKDDEEESESEDESKSEESAEDDS 191
Score = 31.7 bits (72), Expect = 0.14
Identities = 12/48 (25%), Positives = 30/48 (62%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
K + +++ + +++E +E +++++EE E E+E + EE E++ D
Sbjct: 146 AKKGKAKKKTKKSKKKEAKESSDKDDEEESESEDESKSEESAEDDSDD 193
Score = 29.0 bits (65), Expect = 1.2
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 14/60 (23%)
Query: 114 EKEEEDEDEEQEEEEEQE--------------EEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
E E+D D+E+EE+ + E EEE +E E+ E E +E DS I
Sbjct: 185 ESAEDDSDDEEEEDSDSEDYSQYDGMLVDSSDEEEGEEAPSINYNEDTSESESDESDSEI 244
Score = 27.9 bits (62), Expect = 2.9
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 10/56 (17%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQ----------EEQEEEEEEEEEEEEEEEEDSR 158
E+ ED+ +++EEE+ E+ Q EE+ EE E+ E +S
Sbjct: 183 SEESAEDDSDDEEEEDSDSEDYSQYDGMLVDSSDEEEGEEAPSINYNEDTSESESD 238
Score = 27.5 bits (61), Expect = 3.9
Identities = 12/47 (25%), Positives = 29/47 (61%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
I+ K K+ + + + ++ ++++ +E ++ EEE E E+E + EE +
Sbjct: 142 IETKAKKGKAKKKTKKSKKKEAKESSDKDDEEESESEDESKSEESAE 188
Score = 27.5 bits (61), Expect = 4.1
Identities = 13/48 (27%), Positives = 18/48 (37%)
Query: 109 MIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
M+ EEE E+ E E E +E + E E + EE
Sbjct: 210 MLVDSSDEEEGEEAPSINYNEDTSESESDESDSEISESRSVSDSEESS 257
Score = 26.3 bits (58), Expect = 9.5
Identities = 11/45 (24%), Positives = 16/45 (35%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
++EE +E E+ E E E E E + EE
Sbjct: 216 DEEEGEEAPSINYNEDTSESESDESDSEISESRSVSDSEESSPPS 260
>gnl|CDD|235396 PRK05299, rpsB, 30S ribosomal protein S2; Provisional.
Length = 258
Score = 37.5 bits (88), Expect = 0.001
Identities = 20/33 (60%), Positives = 23/33 (69%)
Query: 123 EQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+ E EEEEE+ E+EEEEEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 36.7 bits (86), Expect = 0.002
Identities = 20/33 (60%), Positives = 24/33 (72%)
Query: 122 EEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
+ + E +EEEEE EE+EEEEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 36.7 bits (86), Expect = 0.003
Identities = 20/36 (55%), Positives = 24/36 (66%)
Query: 122 EEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
E ++ + EEE+EE EEEEEEEEEEE EE E
Sbjct: 223 EGRQGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 35.9 bits (84), Expect = 0.004
Identities = 18/34 (52%), Positives = 24/34 (70%)
Query: 115 KEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEE 148
++ + +EEEEE EEEEE+EE+EE EE E E
Sbjct: 225 RQGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 35.9 bits (84), Expect = 0.005
Identities = 19/33 (57%), Positives = 23/33 (69%)
Query: 120 EDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEE 152
+ E EE+EEE E+EE+EEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 35.1 bits (82), Expect = 0.007
Identities = 19/33 (57%), Positives = 23/33 (69%)
Query: 117 EEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEE 149
+ E EEEEE+ EEEE+EE+EEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 34.8 bits (81), Expect = 0.010
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEE 146
++ + EE+EEE E+EEEEE+EE+ EE E E
Sbjct: 225 RQGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 34.4 bits (80), Expect = 0.015
Identities = 19/33 (57%), Positives = 23/33 (69%)
Query: 118 EDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEE 150
+ E EEEE+E EEE+EE+EEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 32.1 bits (74), Expect = 0.088
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEE 142
+ E+E+EE EEEEE+EEEEE EE E E
Sbjct: 228 RLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 31.3 bits (72), Expect = 0.14
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEE 141
+ E EE+E+E +EEEEE+EEEE +E + E
Sbjct: 228 RLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
>gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase
chain; Provisional.
Length = 1033
Score = 37.5 bits (87), Expect = 0.002
Identities = 15/47 (31%), Positives = 27/47 (57%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+ + EEEDE+E + + + +E E+E+E+EE++EE E
Sbjct: 5 VNTQANEEEDEEELEAVARSAGSDSDDDEVPAEDEDEDEEDDEEAES 51
Score = 36.3 bits (84), Expect = 0.005
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 117 EEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
EE++ Q EEE EEE E + + +++E E+ED
Sbjct: 1 EEEQVNTQANEEEDEEELEAVARSAGSDSDDDEVPAEDED 40
Score = 35.2 bits (81), Expect = 0.012
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
EEE + + EEE++EE E + +++E E+E++
Sbjct: 1 EEEQVNTQANEEEDEEELEAVARSAGSDSDDDEVPAEDEDE 41
Score = 34.4 bits (79), Expect = 0.020
Identities = 13/44 (29%), Positives = 27/44 (61%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+ EE+++EE E + +++ E+E+E+EE++EE +S
Sbjct: 8 QANEEEDEEELEAVARSAGSDSDDDEVPAEDEDEDEEDDEEAES 51
Score = 34.4 bits (79), Expect = 0.022
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+ +EE EEE E + +++E E+E+E+EE+D
Sbjct: 6 NTQANEEEDEEELEAVARSAGSDSDDDEVPAEDEDEDEEDDE 47
Score = 34.0 bits (78), Expect = 0.023
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
EE+ + EEE+E+E E + +++E E+E+ED
Sbjct: 2 EEQVNTQANEEEDEEELEAVARSAGSDSDDDEVPAEDEDEDE 43
Score = 33.6 bits (77), Expect = 0.034
Identities = 12/44 (27%), Positives = 25/44 (56%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
E++ + E+E+EEE E + +++E E+E+E+E+
Sbjct: 2 EEQVNTQANEEEDEEELEAVARSAGSDSDDDEVPAEDEDEDEED 45
Score = 30.9 bits (70), Expect = 0.29
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 123 EQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
E+E+ Q EEE EE+ E + +++E
Sbjct: 1 EEEQVNTQANEEEDEEELEAVARSAGSDSDDDEVP 35
Score = 30.9 bits (70), Expect = 0.32
Identities = 9/40 (22%), Positives = 20/40 (50%)
Query: 118 EDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
E+E + EE++EEE + + +++E E++
Sbjct: 1 EEEQVNTQANEEEDEEELEAVARSAGSDSDDDEVPAEDED 40
Score = 26.7 bits (59), Expect = 7.9
Identities = 10/41 (24%), Positives = 21/41 (51%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
KE + ++ + ++ + E EE + EE+EE+E+
Sbjct: 778 KEVRYLMQAHQKGQLKDTIDVAEPEEPGDPLTAEEQEEKEQ 818
>gnl|CDD|227693 COG5406, COG5406, Nucleosome binding factor SPN, SPT16 subunit
[Transcription / DNA replication, recombination, and
repair / Chromatin structure and dynamics].
Length = 1001
Score = 37.7 bits (87), Expect = 0.002
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
E +E DEDEE +E E E+E E +EE+ E+ +E E + +
Sbjct: 948 ESDETDEDEESDESSEDLSEDESENDSSDEEDGEDWDELESKAAY 992
Score = 36.5 bits (84), Expect = 0.004
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
E +E++E +E E+ ++E E EE+ E+ +E E + DSR
Sbjct: 951 ETDEDEESDESSEDLSEDESENDSSDEEDGEDWDELESKAAYDSR 995
Score = 36.1 bits (83), Expect = 0.005
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
+E DE +E EE +E E+ ++E E + +EE+ E+ +E +S+
Sbjct: 945 SDDESDETDEDEESDESSEDLSEDESENDSSDEEDGEDWDELESK 989
Score = 35.8 bits (82), Expect = 0.006
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
E E +DE E +E++E +E E+ E+E E + +EE+ ED
Sbjct: 940 EYEASSDDESDETDEDEESDESSEDLSEDESENDSSDEEDGED 982
Score = 35.4 bits (81), Expect = 0.010
Identities = 16/42 (38%), Positives = 27/42 (64%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+E DE EE+ E E ++E +E +E+EE +E E+ E++S
Sbjct: 929 DESDESEEEVSEYEASSDDESDETDEDEESDESSEDLSEDES 970
Score = 34.6 bits (79), Expect = 0.019
Identities = 14/45 (31%), Positives = 21/45 (46%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
E EE DE E E+E E + EE E+ +E E + + +
Sbjct: 954 EDEESDESSEDLSEDESENDSSDEEDGEDWDELESKAAYDSRPGK 998
Score = 32.7 bits (74), Expect = 0.086
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
E+ E E +E +E +E+EE +E E+ E+E E + +E+
Sbjct: 936 EEVSEYEASSDDESDETDEDEESDESSEDLSEDESENDSSDEED 979
Score = 31.5 bits (71), Expect = 0.17
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
E E+E E E + E +E E++E +E E+ E+E E DS
Sbjct: 933 ESEEEVSEYEASSDDESDETDEDEESDESSEDLSEDESENDS 974
Score = 28.8 bits (64), Expect = 1.6
Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
E +E ED E+E E + +E++ ++ +E E + + R
Sbjct: 957 ESDESSEDLS-EDESENDSSDEEDGEDWDELESKAAYDSRPGKRR 1000
Score = 26.5 bits (58), Expect = 7.7
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 122 EEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+ E +E +EE E E ++E +E +E+EE +E S
Sbjct: 927 SDDESDESEEEVSEYEASSDDESDETDEDEESDESS 962
>gnl|CDD|218734 pfam05758, Ycf1, Ycf1. The chloroplast genomes of most higher
plants contain two giant open reading frames designated
ycf1 and ycf2. Although the function of Ycf1 is unknown,
it is known to be an essential gene.
Length = 832
Score = 37.3 bits (87), Expect = 0.002
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 107 FWMIKPK-----EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
F+ K K E+ EE+ D E E E + ++++E EE+ EE+E+ D
Sbjct: 221 FFTKKLKETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPD 275
Score = 34.2 bits (79), Expect = 0.024
Identities = 13/56 (23%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 109 MIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEE---EEEEEEEEEEEEDSRILI 161
+ +E+E + E E E + ++E+E +E+ EE+E+ ++ E+ D ++
Sbjct: 231 ETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLEIL 286
Score = 31.5 bits (72), Expect = 0.17
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
K+ +E E EE+EEE + E E E + ++E+E EE+ S
Sbjct: 221 FFTKKLKETSETEEREEETDVEIETTSETKGTKQEQEG---STEEDPS 265
Score = 31.1 bits (71), Expect = 0.20
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 121 DEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRIL 160
E E EE +EE + + E E + ++E+E E+ L
Sbjct: 227 KETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSL 266
Score = 30.4 bits (69), Expect = 0.40
Identities = 11/45 (24%), Positives = 23/45 (51%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
E E + +QE+E EE+ +E+E+ ++ E+ ++ E
Sbjct: 243 IETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLEILK 287
Score = 29.6 bits (67), Expect = 0.67
Identities = 11/43 (25%), Positives = 27/43 (62%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
K+E++ E++ EE+E+ ++ E+ ++ E +E+++EE
Sbjct: 251 GTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLEILKEKKDEE 293
Score = 28.0 bits (63), Expect = 2.8
Identities = 13/33 (39%), Positives = 24/33 (72%)
Query: 108 WMIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQE 140
W+ K KE + D EE+ ++EE++E+ ++EE+E
Sbjct: 646 WIEKKKEFKILDYTEEKTKKEEKKEKNKREEKE 678
>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682). The
members of this family are all hypothetical eukaryotic
proteins of unknown function. One member is described as
being an adipocyte-specific protein, but no evidence of
this was found.
Length = 322
Score = 36.5 bits (85), Expect = 0.003
Identities = 16/44 (36%), Positives = 30/44 (68%)
Query: 115 KEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
+EEE++ + EEE QEE +E++E++++EE E + + E+ R
Sbjct: 266 EEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQR 309
Score = 33.4 bits (77), Expect = 0.032
Identities = 13/39 (33%), Positives = 25/39 (64%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEE 152
E++ EE+ +EE QE++EE++++E E + + EE
Sbjct: 269 EEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEE 307
Score = 33.0 bits (76), Expect = 0.051
Identities = 16/45 (35%), Positives = 29/45 (64%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
K ++ +EE+E+ + EEE QEE +E++EE+++EE E +
Sbjct: 258 LRKVDKTREEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAK 302
Score = 31.8 bits (73), Expect = 0.11
Identities = 13/38 (34%), Positives = 26/38 (68%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEE 150
++ + E+E QEE +E++EE+++EE+E + + EE
Sbjct: 270 EKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEE 307
Score = 28.4 bits (64), Expect = 1.5
Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 113 KEKEEEDEDEEQEEEEEQE-EEEEQEEQEEEEEEEEEEEEEEEE 155
K EEE ++E QE++EE++ EE E + + EE+ + EE+E +
Sbjct: 274 KAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERK 317
Score = 28.0 bits (63), Expect = 2.1
Identities = 14/35 (40%), Positives = 25/35 (71%)
Query: 126 EEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRIL 160
EEEE++ + EE+ +EE +E++EE+++EE L
Sbjct: 266 EEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKL 300
>gnl|CDD|184539 PRK14150, PRK14150, heat shock protein GrpE; Provisional.
Length = 193
Score = 36.1 bits (84), Expect = 0.003
Identities = 17/42 (40%), Positives = 29/42 (69%)
Query: 118 EDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
+E+++ +E+ EE E + EQ+EE +E E E+E +E D+RI
Sbjct: 2 SNEEQKTPQEQVSEEIEAEVEQQEEADEAELEDELDEADARI 43
Score = 32.2 bits (74), Expect = 0.072
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 109 MIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
M ++K +++ E+ E E +++EE E + E+E +E + E E
Sbjct: 1 MSNEEQKTPQEQVSEEIEAEVEQQEEADEAELEDELDEADARIAELE 47
Score = 30.3 bits (69), Expect = 0.29
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
K +E+ +E + E E+QEE +E E ++E +E + E E
Sbjct: 7 KTPQEQVSEEIEAEVEQQEEADEAELEDELDEADARIAELEA 48
>gnl|CDD|227496 COG5167, VID27, Protein involved in vacuole import and degradation
[Intracellular trafficking and secretion].
Length = 776
Score = 36.9 bits (85), Expect = 0.003
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
E + ++ E+ E E E+ E EEE E+ E+E + RI
Sbjct: 359 PLEKQFDDILYFEKMEIENRNPEESEHEEEVEDYEDENDHSKRI 402
Score = 36.1 bits (83), Expect = 0.005
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+ E++ ++ E+ + E EE E EEE E+ ED
Sbjct: 354 DSSSVPLEKQFDDILYFEKMEIENRNPEESEHEEEVEDYEDE 395
Score = 33.4 bits (76), Expect = 0.044
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+ +++ ++ E+ E + EE E EEE E+ E+E
Sbjct: 354 DSSSVPLEKQFDDILYFEKMEIENRNPEESEHEEEVEDYEDE 395
Score = 32.3 bits (73), Expect = 0.11
Identities = 14/50 (28%), Positives = 22/50 (44%)
Query: 108 WMIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
W + E+++ D E+Q ++ E+ E E EE E EEE
Sbjct: 341 WGNEEAERKDYILDSSSVPLEKQFDDILYFEKMEIENRNPEESEHEEEVE 390
Score = 31.9 bits (72), Expect = 0.14
Identities = 13/45 (28%), Positives = 21/45 (46%)
Query: 107 FWMIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEE 151
+ + E+ D+ E+ + E EE E EEE E+ E+E
Sbjct: 351 YILDSSSVPLEKQFDDILYFEKMEIENRNPEESEHEEEVEDYEDE 395
Score = 31.1 bits (70), Expect = 0.22
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
K+ ++ E+ E E EE E EE+ E+ E+E + + +D
Sbjct: 362 KQFDDILYFEKMEIENRNPEESEHEEEVEDYEDENDHSKRICDD 405
Score = 30.7 bits (69), Expect = 0.30
Identities = 11/47 (23%), Positives = 23/47 (48%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+ E E + +E + EEE ++ E+E + + +++E E D
Sbjct: 370 FEKMEIENRNPEESEHEEEVEDYEDENDHSKRICDDDELENHFRAAD 416
Score = 30.3 bits (68), Expect = 0.39
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 112 PKEKEEEDEDE-EQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
P EK+ +D E+ E E + EE + E+E E+ E+E + + D
Sbjct: 359 PLEKQFDDILYFEKMEIENRNPEESEHEEEVEDYEDENDHSKRICDD 405
Score = 28.0 bits (62), Expect = 2.9
Identities = 12/48 (25%), Positives = 25/48 (52%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRILI 161
E +E E +EE E+ E+E + ++ +++E E +E + L+
Sbjct: 376 ENRNPEESEHEEEVEDYEDENDHSKRICDDDELENHFRAADEKNSHLV 423
Score = 28.0 bits (62), Expect = 3.0
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
E+ + + EE E EEE E E E + + +++E E R
Sbjct: 371 EKMEIENRNPEESEHEEEVEDYEDENDHSKRICDDDELENHFR 413
Score = 27.3 bits (60), Expect = 4.4
Identities = 10/43 (23%), Positives = 23/43 (53%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEE 152
I+ + EE + +EE E+ E++ + ++ ++E E +E
Sbjct: 375 IENRNPEESEHEEEVEDYEDENDHSKRICDDDELENHFRAADE 417
Score = 27.3 bits (60), Expect = 4.7
Identities = 9/48 (18%), Positives = 27/48 (56%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRILI 161
+ E+ + E+E E+ ++E + + +++E E +E++S +++
Sbjct: 377 NRNPEESEHEEEVEDYEDENDHSKRICDDDELENHFRAADEKNSHLVV 424
>gnl|CDD|237047 PRK12298, obgE, GTPase CgtA; Reviewed.
Length = 390
Score = 36.4 bits (85), Expect = 0.003
Identities = 15/45 (33%), Positives = 29/45 (64%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
P+E+ EE E E+ E + EQ E+ EEE++++ +++ +E+D
Sbjct: 336 PREEAEEAEAPEKVEFMWDDYHREQLEEVEEEDDDDWDDDWDEDD 380
Score = 36.4 bits (85), Expect = 0.003
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+ EE E+ E E+ E ++ EQ EE EEE++++ +++ D
Sbjct: 334 ENPREEAEEAEAPEKVEFMWDDYHREQLEEVEEEDDDDWDDDWD 377
Score = 35.6 bits (83), Expect = 0.006
Identities = 13/44 (29%), Positives = 28/44 (63%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+E EE + E+ E + E+ EE EEE++++ +++ +E++D
Sbjct: 338 EEAEEAEAPEKVEFMWDDYHREQLEEVEEEDDDDWDDDWDEDDD 381
Score = 34.8 bits (81), Expect = 0.010
Identities = 10/49 (20%), Positives = 29/49 (59%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
+ E+ E E E ++ E+ E+ E+E++++ +++ +E+++E +
Sbjct: 338 EEAEEAEAPEKVEFMWDDYHREQLEEVEEEDDDDWDDDWDEDDDEGVEV 386
Score = 34.1 bits (79), Expect = 0.021
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
E+ +E EE E E+ E + +E+ EE EEE++++ ++D
Sbjct: 333 EENPREEAEEAEAPEKVEFMWDDYHREQLEEVEEEDDDDWDDD 375
>gnl|CDD|218556 pfam05327, RRN3, RNA polymerase I specific transcription initiation
factor RRN3. This family consists of several eukaryotic
proteins which are homologous to the yeast RRN3 protein.
RRN3 is one of the RRN genes specifically required for
the transcription of rDNA by RNA polymerase I (Pol I) in
Saccharomyces cerevisiae.
Length = 554
Score = 36.5 bits (85), Expect = 0.003
Identities = 11/42 (26%), Positives = 26/42 (61%)
Query: 119 DEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRIL 160
D+ +++EEE +E++ +E + + ++++EEE + E R
Sbjct: 223 DDIDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVERTS 264
Score = 36.1 bits (84), Expect = 0.005
Identities = 10/42 (23%), Positives = 28/42 (66%)
Query: 117 EEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
++ +DEE+E E+++++++ + ++++EEE + E E +
Sbjct: 223 DDIDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVERTS 264
Score = 33.8 bits (78), Expect = 0.026
Identities = 9/50 (18%), Positives = 28/50 (56%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRILI 161
+ +++E+E +E+ ++E++ + ++++EEE + E E + +
Sbjct: 221 ELDDIDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVERTSTIKEVS 270
Score = 30.3 bits (69), Expect = 0.37
Identities = 9/36 (25%), Positives = 24/36 (66%)
Query: 122 EEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
E Q E ++ ++EEE+ +E++++E++ + ++D
Sbjct: 217 EIQNELDDIDDEEEERVLADEDDDDEDDMFDMDDDD 252
Score = 26.5 bits (59), Expect = 7.3
Identities = 9/36 (25%), Positives = 23/36 (63%)
Query: 121 DEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
D E + E + ++EE+E +E++++E++ + +D
Sbjct: 215 DVEIQNELDDIDDEEEERVLADEDDDDEDDMFDMDD 250
>gnl|CDD|235795 PRK06402, rpl12p, 50S ribosomal protein L12P; Reviewed.
Length = 106
Score = 34.9 bits (81), Expect = 0.003
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 131 EEEEEQEEQEEEEEEEEEEEEEEEEDS 157
EE++EEEEEEEE+EE EEE +
Sbjct: 72 AAAAAAEEKKEEEEEEEEKEESEEEAA 98
Score = 34.2 bits (79), Expect = 0.006
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 126 EEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
EE++EE+EEEEE+EE EEE
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEEAAA 99
Score = 34.2 bits (79), Expect = 0.007
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 129 EQEEEEEQEEQEEEEEEEEEEEEEEEED 156
E+++EEEEEEEE+EE EE+
Sbjct: 69 AAAAAAAAAEEKKEEEEEEEEKEESEEE 96
Score = 33.4 bits (77), Expect = 0.012
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 127 EEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
EE++E+EEEEEE+EE EEE
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEEAAA 99
Score = 33.0 bits (76), Expect = 0.019
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 123 EQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
EE+++EE+EEEE+EE EEE
Sbjct: 69 AAAAAAAAAEEKKEEEEEEEEKEESEEEAAA 99
Score = 32.2 bits (74), Expect = 0.038
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 132 EEEEQEEQEEEEEEEEEEEEEEEEDS 157
+E++EEEEEEEE+EE E+
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEE 96
Score = 31.8 bits (73), Expect = 0.050
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 122 EEQEEEEEQEEEEEQEEQEEEEEEEEEE 149
EE++EEEE+EE++EE EEE
Sbjct: 72 AAAAAAEEKKEEEEEEEEKEESEEEAAA 99
Score = 31.5 bits (72), Expect = 0.065
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 120 EDEEQEEEEEQEEEEEQEEQEEEEEEEEE 148
EE++EEEEE+EE+EE EEE
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEEAAA 99
Score = 31.1 bits (71), Expect = 0.082
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 118 EDEDEEQEEEEEQEEEEEQEEQEEEEEEE 146
EE++E+EEEEE++E+ EEE
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEEAAA 99
Score = 30.3 bits (69), Expect = 0.16
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 117 EEDEDEEQEEEEEQEEEEEQEEQEEEEEE 145
+E++EE+EEEEE+EE EEE
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEEAAA 99
Score = 29.5 bits (67), Expect = 0.31
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEE 143
EE++EEEE+EEE+E+ E+E
Sbjct: 72 AAAAAAEEKKEEEEEEEEKEESEEEAAA 99
Score = 29.2 bits (66), Expect = 0.38
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEE 135
E++ EE+EEEEE+EE EE
Sbjct: 72 AAAAAAEEKKEEEEEEEEKEESEE 95
Score = 29.2 bits (66), Expect = 0.43
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEE 134
EE+ E+EE+EEE+E+ EEE
Sbjct: 74 AAAAEEKKEEEEEEEEKEESEEE 96
Score = 29.2 bits (66), Expect = 0.46
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEE 135
EE ++EE+EEEE++E EEE
Sbjct: 73 AAAAAEEKKEEEEEEEEKEESEEE 96
Score = 28.8 bits (65), Expect = 0.49
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEE 144
E+++EEE+EEEE++E +EE
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEEAAA 99
Score = 27.6 bits (62), Expect = 1.2
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQE 137
+E +E+EEEEE++EE E+E
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEE 96
Score = 26.5 bits (59), Expect = 4.1
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEE 135
E+++E+E+EE+E+EE +EE
Sbjct: 75 AAAEEKKEEEEEEEEKEESEEEAAA 99
>gnl|CDD|221429 pfam12118, SprA-related, SprA-related family. This protein is
found in bacteria. Proteins in this family are typically
between 234 to 465 amino acids in length. There is a
conserved GEV sequence motif.Most members are annotated
as being SprA-related.
Length = 261
Score = 36.3 bits (84), Expect = 0.004
Identities = 11/42 (26%), Positives = 30/42 (71%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
K+ E +++E EEE ++++ E +Q ++++E++++EE++
Sbjct: 71 KQASESNDEEVVGEEEPEKDQAEAGKQLSQKQQEQQQQEEKQ 112
Score = 34.4 bits (79), Expect = 0.013
Identities = 9/40 (22%), Positives = 27/40 (67%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEE 150
+ +EE EE+ E+++ E ++ ++++E++++EE++
Sbjct: 73 ASESNDEEVVGEEEPEKDQAEAGKQLSQKQQEQQQQEEKQ 112
Score = 34.0 bits (78), Expect = 0.018
Identities = 9/42 (21%), Positives = 30/42 (71%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+K+ + ++E+ EE+ E+++ E ++ ++++E++++EE+
Sbjct: 70 QKQASESNDEEVVGEEEPEKDQAEAGKQLSQKQQEQQQQEEK 111
Score = 34.0 bits (78), Expect = 0.018
Identities = 9/48 (18%), Positives = 30/48 (62%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRIL 160
++ ++ E +EE EEE E+++ E ++ ++++E+++++ + +
Sbjct: 66 SQELQKQASESNDEEVVGEEEPEKDQAEAGKQLSQKQQEQQQQEEKQV 113
Score = 33.2 bits (76), Expect = 0.042
Identities = 10/48 (20%), Positives = 27/48 (56%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRILI 161
+E + + E +EE EEE +++Q E ++ ++++E+++ +
Sbjct: 66 SQELQKQASESNDEEVVGEEEPEKDQAEAGKQLSQKQQEQQQQEEKQV 113
Score = 32.8 bits (75), Expect = 0.054
Identities = 9/42 (21%), Positives = 27/42 (64%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEE 152
K + ++E +EE E+ + E ++ ++++E++++EE++
Sbjct: 71 KQASESNDEEVVGEEEPEKDQAEAGKQLSQKQQEQQQQEEKQ 112
Score = 32.4 bits (74), Expect = 0.066
Identities = 11/42 (26%), Positives = 28/42 (66%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
+ E DE+ EEE E+++ E ++ ++++E++++EE++
Sbjct: 71 KQASESNDEEVVGEEEPEKDQAEAGKQLSQKQQEQQQQEEKQ 112
Score = 31.3 bits (71), Expect = 0.18
Identities = 8/44 (18%), Positives = 27/44 (61%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+E +++ + EE +EE E+ + + ++ ++++E++++E
Sbjct: 66 SQELQKQASESNDEEVVGEEEPEKDQAEAGKQLSQKQQEQQQQE 109
Score = 30.9 bits (70), Expect = 0.25
Identities = 10/45 (22%), Positives = 29/45 (64%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+ +++ E ++E E+E E++Q E ++ ++++E++++EE
Sbjct: 66 SQELQKQASESNDEEVVGEEEPEKDQAEAGKQLSQKQQEQQQQEE 110
Score = 29.8 bits (67), Expect = 0.55
Identities = 9/42 (21%), Positives = 23/42 (54%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+E + + +EE EEE E+ + E ++ ++++E++
Sbjct: 65 ASQELQKQASESNDEEVVGEEEPEKDQAEAGKQLSQKQQEQQ 106
>gnl|CDD|183610 PRK12585, PRK12585, putative monovalent cation/H+ antiporter
subunit G; Reviewed.
Length = 197
Score = 35.8 bits (82), Expect = 0.004
Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
K E ED++E++ E EEQ EE+ ++ E E E++E E E ++D
Sbjct: 150 KIDEREDQEEQEREREEQTIEEQSDDSEHEIIEQDESETESDDDK 194
Score = 34.3 bits (78), Expect = 0.014
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
I+ +E E+ +E E E +E+ +E+E+QEE+E E EE+ EE+ D
Sbjct: 128 IEKARQEREELEERMEWERREEKIDEREDQEEQEREREEQTIEEQSD 174
Score = 33.1 bits (75), Expect = 0.034
Identities = 18/45 (40%), Positives = 32/45 (71%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
++++ E +E+EE EE+ E E +EE+ +E E++EE+E E EE +
Sbjct: 124 RQEQIEKARQEREELEERMEWERREEKIDEREDQEEQEREREEQT 168
Score = 32.7 bits (74), Expect = 0.043
Identities = 21/49 (42%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Query: 113 KEKEEEDEDEEQEEEEEQ-EEEEEQEEQEEEEEEEEEEEEEEEEDSRIL 160
+E+EE +E E E EE+ +E E+QEEQE E EE+ EE+ ++ + I+
Sbjct: 133 QEREELEERMEWERREEKIDEREDQEEQEREREEQTIEEQSDDSEHEII 181
Score = 32.0 bits (72), Expect = 0.095
Identities = 15/46 (32%), Positives = 29/46 (63%)
Query: 115 KEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRIL 160
++E+ E QE EE +E E + +E+ +E E++EE+E E + + +
Sbjct: 124 RQEQIEKARQEREELEERMEWERREEKIDEREDQEEQEREREEQTI 169
Score = 31.6 bits (71), Expect = 0.13
Identities = 18/47 (38%), Positives = 30/47 (63%)
Query: 109 MIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+I +E+ E+ E +E EE E E +E+ +E E++EE+E E EE+
Sbjct: 121 LIIRQEQIEKARQEREELEERMEWERREEKIDEREDQEEQEREREEQ 167
Score = 29.3 bits (65), Expect = 0.62
Identities = 16/40 (40%), Positives = 27/40 (67%)
Query: 117 EEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
E E++ E E+++E+E E+EEQ EE+ ++ E E E+D
Sbjct: 145 ERREEKIDEREDQEEQEREREEQTIEEQSDDSEHEIIEQD 184
Score = 28.1 bits (62), Expect = 2.0
Identities = 14/44 (31%), Positives = 29/44 (65%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
E E +E ++ E++E++E E +E+ EE+ ++ E E E+++S
Sbjct: 143 EWERREEKIDEREDQEEQEREREEQTIEEQSDDSEHEIIEQDES 186
Score = 27.3 bits (60), Expect = 2.8
Identities = 16/47 (34%), Positives = 31/47 (65%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
IK K+ +++ ++ +E+EE EE+ E E EE+ +E E++EE++
Sbjct: 115 IKKKKSLIIRQEQIEKARQEREELEERMEWERREEKIDEREDQEEQE 161
>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional.
Length = 651
Score = 36.2 bits (84), Expect = 0.004
Identities = 11/45 (24%), Positives = 31/45 (68%)
Query: 109 MIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
+ K +KEE ++E++E ++++ + +++EE++++E E+ E+
Sbjct: 544 VWKLDDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEK 588
Score = 35.0 bits (81), Expect = 0.013
Identities = 13/38 (34%), Positives = 29/38 (76%)
Query: 118 EDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+D++E Q E+EE+E +EQ+ + +++EE++++E E+
Sbjct: 548 DDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEK 585
Score = 28.8 bits (65), Expect = 1.2
Identities = 11/38 (28%), Positives = 28/38 (73%)
Query: 121 DEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
D+++E + E+EE+E +EQ+ + +++EE++++E +
Sbjct: 548 DDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEK 585
Score = 26.9 bits (60), Expect = 5.8
Identities = 10/46 (21%), Positives = 28/46 (60%), Gaps = 5/46 (10%)
Query: 118 EDEDEE-----QEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
ED+ + +++EE + E+E++E +E++ + +++EE+ +
Sbjct: 536 EDKPDGPSVWKLDDKEELQREKEEKEALKEQKRLRKLKKQEEKKKK 581
>gnl|CDD|215914 pfam00428, Ribosomal_60s, 60s Acidic ribosomal protein. This
family includes archaebacterial L12, eukaryotic P0, P1
and P2.
Length = 88
Score = 34.5 bits (80), Expect = 0.004
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 135 EQEEQEEEEEEEEEEEEEEEED 156
EEE++EEEEEEEE++D
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDDD 82
Score = 31.4 bits (72), Expect = 0.044
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 134 EEQEEQEEEEEEEEEEEEEEE 154
EEE++EEEEEEEE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 30.7 bits (70), Expect = 0.087
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 133 EEEQEEQEEEEEEEEEEEEEE 153
+EE++EEEEEEEE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 30.7 bits (70), Expect = 0.097
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 131 EEEEEQEEQEEEEEEEEEEEE 151
EE+++EEEEEEEE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 29.9 bits (68), Expect = 0.15
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 132 EEEEQEEQEEEEEEEEEEEEE 152
E+E++EEEEEEEE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 28.7 bits (65), Expect = 0.39
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 140 EEEEEEEEEEEEEEEEDS 157
EEE++EEEEEE+
Sbjct: 62 AAAAAEEEKKEEEEEEEE 79
Score = 28.4 bits (64), Expect = 0.68
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 127 EEEQEEEEEQEEQEEEEEEEE 147
EEE++E+EEEEEE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 28.0 bits (63), Expect = 0.75
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 129 EQEEEEEQEEQEEEEEEEEEE 149
E+E++EEEEEEEE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 27.6 bits (62), Expect = 1.1
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 126 EEEEQEEEEEQEEQEEEEEEE 146
EEE++EE+EEEEE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 27.6 bits (62), Expect = 1.1
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEE 134
E+E++EEEEE+EE++
Sbjct: 59 AAAAAAAAEEEKKEEEEEEEEDD 81
Score = 27.6 bits (62), Expect = 1.2
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 125 EEEEEQEEEEEQEEQEEEEEE 145
EEE+++EE+EEEE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 27.6 bits (62), Expect = 1.2
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 128 EEQEEEEEQEEQEEEEEEEEE 148
EE++++EEEEEEE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 26.8 bits (60), Expect = 2.1
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 116 EEEDEDEEQEEEEEQEEEEE 135
+EE++EEEE+EEE++
Sbjct: 62 AAAAAEEEKKEEEEEEEEDD 81
Score = 26.4 bits (59), Expect = 2.7
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 121 DEEQEEEEEQEEEEEQEEQEE 141
EEE++EEEE+EE+++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 26.0 bits (58), Expect = 3.8
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEE 135
EE+++EEE+EEEE+
Sbjct: 57 AAAAAAAAAAEEEKKEEEEEEEED 80
Score = 25.7 bits (57), Expect = 5.5
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 123 EQEEEEEQEEEEEQEEQEEEE 143
E+E++EE+EE+EE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 25.3 bits (56), Expect = 8.5
Identities = 8/19 (42%), Positives = 15/19 (78%)
Query: 120 EDEEQEEEEEQEEEEEQEE 138
+EE++E+EEEEE+++
Sbjct: 63 AAAAEEEKKEEEEEEEEDD 81
>gnl|CDD|234311 TIGR03685, L12P_arch, 50S ribosomal protein L12P. This model
represents the L12P protein of the large (50S) subunit
of the archaeal ribosome.
Length = 105
Score = 34.6 bits (80), Expect = 0.004
Identities = 17/25 (68%), Positives = 19/25 (76%)
Query: 130 QEEEEEQEEQEEEEEEEEEEEEEEE 154
E+EE+EEEEEEEEEEE EEE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 34.2 bits (79), Expect = 0.007
Identities = 17/26 (65%), Positives = 19/26 (73%)
Query: 131 EEEEEQEEQEEEEEEEEEEEEEEEED 156
+EE+EEEEEEEEEEEE EEE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEEA 96
Score = 33.9 bits (78), Expect = 0.010
Identities = 17/26 (65%), Positives = 20/26 (76%)
Query: 132 EEEEQEEQEEEEEEEEEEEEEEEEDS 157
EE+EEEEEEEEEEEEE EE++
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEEA 96
Score = 33.1 bits (76), Expect = 0.016
Identities = 17/25 (68%), Positives = 19/25 (76%)
Query: 127 EEEQEEEEEQEEQEEEEEEEEEEEE 151
EEEE+EE+EEEEEEEE EEE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 32.7 bits (75), Expect = 0.022
Identities = 17/25 (68%), Positives = 19/25 (76%)
Query: 129 EQEEEEEQEEQEEEEEEEEEEEEEE 153
EE+EE+EEEEEEEEEE EEE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 32.7 bits (75), Expect = 0.024
Identities = 16/25 (64%), Positives = 19/25 (76%)
Query: 124 QEEEEEQEEEEEQEEQEEEEEEEEE 148
E+EEEEE+EE+EEEEE EEE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 32.7 bits (75), Expect = 0.025
Identities = 17/25 (68%), Positives = 19/25 (76%)
Query: 126 EEEEQEEEEEQEEQEEEEEEEEEEE 150
EEEEE+EE+EEEEEEE EEE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 32.3 bits (74), Expect = 0.027
Identities = 17/25 (68%), Positives = 19/25 (76%)
Query: 128 EEQEEEEEQEEQEEEEEEEEEEEEE 152
EEE+EE+EEEEEEEEE EEE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 31.6 bits (72), Expect = 0.067
Identities = 16/24 (66%), Positives = 19/24 (79%)
Query: 122 EEQEEEEEQEEEEEQEEQEEEEEE 145
EEEE+EEEEE+EE+EE EEE
Sbjct: 72 AAAAEEEEEEEEEEEEEEEESEEE 95
Score = 31.2 bits (71), Expect = 0.070
Identities = 16/25 (64%), Positives = 19/25 (76%)
Query: 125 EEEEEQEEEEEQEEQEEEEEEEEEE 149
+EEEEE+EE+EEEEEE EEE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 31.2 bits (71), Expect = 0.091
Identities = 16/25 (64%), Positives = 19/25 (76%)
Query: 123 EQEEEEEQEEEEEQEEQEEEEEEEE 147
EE+EEEEE+EE+EEEE EEE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 30.8 bits (70), Expect = 0.094
Identities = 16/25 (64%), Positives = 19/25 (76%)
Query: 122 EEQEEEEEQEEEEEQEEQEEEEEEE 146
EEE+EEEEE+EE+EEE EEE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 30.0 bits (68), Expect = 0.20
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEE 135
EE+E+EE+EEEEE+EE EE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEE 94
Score = 29.6 bits (67), Expect = 0.29
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQE 137
E+E+EE+EEEEE+EEE E+E
Sbjct: 72 AAAAEEEEEEEEEEEEEEEESEEE 95
Score = 29.2 bits (66), Expect = 0.33
Identities = 14/23 (60%), Positives = 19/23 (82%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEE 134
+EEE+E+EE+EEEEE+ EEE
Sbjct: 73 AAAEEEEEEEEEEEEEEEESEEE 95
Score = 29.2 bits (66), Expect = 0.37
Identities = 15/23 (65%), Positives = 18/23 (78%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEE 138
E+EE+EEEEE+EEEEE EE
Sbjct: 72 AAAAEEEEEEEEEEEEEEEESEE 94
Score = 29.2 bits (66), Expect = 0.40
Identities = 16/23 (69%), Positives = 19/23 (82%)
Query: 120 EDEEQEEEEEQEEEEEQEEQEEE 142
E+EEEEE+EEEEE+EE EEE
Sbjct: 73 AAAEEEEEEEEEEEEEEEESEEE 95
Score = 29.2 bits (66), Expect = 0.44
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEE 138
+E+EE+EEEEE+EEEE +EE
Sbjct: 69 AAAAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 27.7 bits (62), Expect = 1.2
Identities = 15/23 (65%), Positives = 19/23 (82%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEE 133
E+EEE+E+EE+EEEEE EEE
Sbjct: 73 AAAEEEEEEEEEEEEEEEESEEE 95
Score = 27.3 bits (61), Expect = 1.7
Identities = 15/25 (60%), Positives = 19/25 (76%)
Query: 117 EEDEDEEQEEEEEQEEEEEQEEQEE 141
EE+EEEEE+EEEEE+E +EE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 27.3 bits (61), Expect = 1.8
Identities = 14/25 (56%), Positives = 19/25 (76%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQE 140
+EE+EEEEE+EEEEE+ E+E
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
>gnl|CDD|227447 COG5117, NOC3, Protein involved in the nuclear export of
pre-ribosomes [Translation, ribosomal structure and
biogenesis / Intracellular trafficking and secretion].
Length = 657
Score = 36.2 bits (83), Expect = 0.004
Identities = 8/46 (17%), Positives = 23/46 (50%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
E E E E + ++++++ +E++ E +++ + E+E
Sbjct: 94 FLSESESEASLEIDSDIKDEKQKSLEEQKIAPEIPVKQQIDSEKER 139
Score = 31.5 bits (71), Expect = 0.19
Identities = 10/43 (23%), Positives = 21/43 (48%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
+E E E E E + ++E+Q+ EE++ E +++
Sbjct: 90 NGEEFLSESESEASLEIDSDIKDEKQKSLEEQKIAPEIPVKQQ 132
Score = 30.4 bits (68), Expect = 0.42
Identities = 12/45 (26%), Positives = 23/45 (51%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
IK K+ D + +E E E E E + ++E+++ EE++
Sbjct: 78 IKTKDNVVADVNNGEEFLSESESEASLEIDSDIKDEKQKSLEEQK 122
>gnl|CDD|212055 cd11486, SLC5sbd_SGLT1, Na(+)/glucose cotransporter SGLT1;solute
binding domain. Human SGLT1 (hSGLT1) is a
high-affinity/low-capacity glucose transporter, which
can also transport galactose. In the transport
mechanism, two Na+ ions first bind to the extracellular
side of the transporter and induce a conformational
change in the glucose binding site. This results in an
increased affinity for glucose. A second conformational
change in the transporter follows, bringing the Na+ and
glucose binding sites to the inner surface of the
membrane. Glucose is then released, followed by the Na+
ions. In the process, hSGLT1 is also able to transport
water and urea and may be a major pathway for transport
of these across the intestinal brush-border membrane.
hSGLT1 is encoded by the SLC5A1 gene and expressed
mostly in the intestine, but also in the trachea,
kidney, heart, brain, testis, and prostate. The
WHO/UNICEF oral rehydration solution (ORS) for the
treatment of secretory diarrhea contains salt and
glucose. The glucose, along with sodium ions, is
transported by hSGLT1 and water is either co-transported
along with these or follows by osmosis. Mutations in
SGLT1 are associated with intestinal glucose galactose
malabsorption (GGM). Up-regulation of intestinal SGLT1
may protect against enteric infections. SGLT1 is
expressed in colorectal, head and neck, and prostate
tumors. Epidermal growth factor receptor (EGFR)
functions in cell survival by stabilizing SGLT1, and
thereby maintaining intracellular glucose levels. SGLT1
is predicted to have 14 membrane-spanning regions. This
subgroup belongs to the solute carrier 5
(SLC5)transporter family.
Length = 635
Score = 36.4 bits (84), Expect = 0.005
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEE 144
+ EE D + ++ E E+E E E EE ++
Sbjct: 538 RNSTEERIDLDADDWTEDEDENEMETDEERKK 569
Score = 36.0 bits (83), Expect = 0.006
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 108 WMIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEE 142
W ++ +E D D + E+E E E E +E+ ++
Sbjct: 535 WSLRNSTEERIDLDADDWTEDEDENEMETDEERKK 569
Score = 32.9 bits (75), Expect = 0.052
Identities = 8/29 (27%), Positives = 18/29 (62%)
Query: 124 QEEEEEQEEEEEQEEQEEEEEEEEEEEEE 152
EE + + ++ E+++E E E +EE ++
Sbjct: 541 TEERIDLDADDWTEDEDENEMETDEERKK 569
Score = 32.5 bits (74), Expect = 0.091
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 128 EEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
EE+ + + + E+E+E E E +EE ++
Sbjct: 542 EERIDLDADDWTEDEDENEMETDEERKK 569
Score = 32.1 bits (73), Expect = 0.097
Identities = 8/28 (28%), Positives = 18/28 (64%)
Query: 122 EEQEEEEEQEEEEEQEEQEEEEEEEEEE 149
EE+ + + + E+++E E E +EE ++
Sbjct: 542 EERIDLDADDWTEDEDENEMETDEERKK 569
Score = 31.8 bits (72), Expect = 0.14
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 126 EEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
EE + ++ E E+E E E +EE ++
Sbjct: 542 EERIDLDADDWTEDEDENEMETDEERKK 569
Score = 31.0 bits (70), Expect = 0.26
Identities = 7/28 (25%), Positives = 17/28 (60%)
Query: 123 EQEEEEEQEEEEEQEEQEEEEEEEEEEE 150
E+ + + ++ E E++ E E +EE ++
Sbjct: 542 EERIDLDADDWTEDEDENEMETDEERKK 569
Score = 31.0 bits (70), Expect = 0.28
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 129 EQEEEEEQEEQEEEEEEEEEEEEEEEED 156
E+ + + ++ E+E+E E E +EE +
Sbjct: 542 EERIDLDADDWTEDEDENEMETDEERKK 569
Score = 29.8 bits (67), Expect = 0.58
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 127 EEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
EE + + + ++E+E E E +EE ++
Sbjct: 542 EERIDLDADDWTEDEDENEMETDEERKK 569
Score = 29.1 bits (65), Expect = 1.0
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 130 QEEEEEQEEQEEEEEEEEEEEEEEEE 155
EE + + + E+E+E E E +EE
Sbjct: 541 TEERIDLDADDWTEDEDENEMETDEE 566
Score = 28.7 bits (64), Expect = 1.5
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 132 EEEEQEEQEEEEEEEEEEEEEEEEDSR 158
EE + ++ E+E+E E E +E+ +
Sbjct: 542 EERIDLDADDWTEDEDENEMETDEERK 568
>gnl|CDD|218312 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle control protein.
This family represents Cwf15/Cwc15 (from
Schizosaccharomyces pombe and Saccharomyces cerevisiae
respectively) and their homologues. The function of
these proteins is unknown, but they form part of the
spliceosome and are thus thought to be involved in mRNA
splicing.
Length = 241
Score = 35.9 bits (83), Expect = 0.005
Identities = 17/47 (36%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Query: 114 EKEEEDEDEEQEEEEE--QEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
++ D+D+ ++E +E E+ ++E+ EE+E EEEE+ EEE +R
Sbjct: 131 SDDDSDDDDSEDETAALLRELEKIKKERAEEKEREEEEKAAEEEKAR 177
Score = 35.1 bits (81), Expect = 0.007
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 8/51 (15%)
Query: 114 EKEEEDEDEEQEEEEEQE--------EEEEQEEQEEEEEEEEEEEEEEEED 156
+ ++D D++ E+E ++E EE+E EEEE+ EEE+ E+
Sbjct: 129 DSSDDDSDDDDSEDETAALLRELEKIKKERAEEKEREEEEKAAEEEKAREE 179
Score = 34.7 bits (80), Expect = 0.011
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 10/57 (17%)
Query: 114 EKEEEDEDEEQEEEEEQEEEE----------EQEEQEEEEEEEEEEEEEEEEDSRIL 160
+ +D+ +++ E E E+ E++E EEEE+ EEE+ + IL
Sbjct: 126 SDSDSSDDDSDDDDSEDETAALLRELEKIKKERAEEKEREEEEKAAEEEKAREEEIL 182
Score = 28.5 bits (64), Expect = 1.5
Identities = 14/28 (50%), Positives = 21/28 (75%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQE 140
K K+E E++E+EEEE+ EEE+ E+E
Sbjct: 153 KIKKERAEEKEREEEEKAAEEEKAREEE 180
Score = 28.2 bits (63), Expect = 1.6
Identities = 5/41 (12%), Positives = 18/41 (43%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
K K E++ + ++ + ++ ++++ E+E
Sbjct: 106 KRKRIEEDARNSDADDSDSSSDSDSSDDDSDDDDSEDETAA 146
Score = 27.8 bits (62), Expect = 2.6
Identities = 4/44 (9%), Positives = 21/44 (47%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+ K + E++ + + + + + +++ ++++ E+E
Sbjct: 103 DEIKRKRIEEDARNSDADDSDSSSDSDSSDDDSDDDDSEDETAA 146
Score = 27.4 bits (61), Expect = 3.1
Identities = 8/44 (18%), Positives = 24/44 (54%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+ +ED+DEE E + ++ EE+ + ++ + + + +++
Sbjct: 93 NEGDEDDDEEDEIKRKRIEEDARNSDADDSDSSSDSDSSDDDSD 136
Score = 27.0 bits (60), Expect = 4.5
Identities = 7/42 (16%), Positives = 22/42 (52%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEE 151
IK K EE+ + + ++ + + + ++ ++++ E+E
Sbjct: 105 IKRKRIEEDARNSDADDSDSSSDSDSSDDDSDDDDSEDETAA 146
Score = 25.8 bits (57), Expect = 9.7
Identities = 5/48 (10%), Positives = 24/48 (50%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
++++++EDE + + E++ + + + + +++ ++D
Sbjct: 92 SNEGDEDDDEEDEIKRKRIEEDARNSDADDSDSSSDSDSSDDDSDDDD 139
>gnl|CDD|235548 PRK05657, PRK05657, RNA polymerase sigma factor RpoS; Validated.
Length = 325
Score = 36.1 bits (84), Expect = 0.005
Identities = 13/52 (25%), Positives = 22/52 (42%)
Query: 109 MIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRIL 160
M ED D ++ E +E+ EE+ + + EEE + R+L
Sbjct: 1 MTLKVHDLNEDADFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVL 52
Score = 29.2 bits (66), Expect = 0.84
Identities = 9/43 (20%), Positives = 18/43 (41%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+ + ++ E +E+ EEE + EEE + + D
Sbjct: 11 DADFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLD 53
>gnl|CDD|226894 COG4499, COG4499, Predicted membrane protein [Function unknown].
Length = 434
Score = 35.9 bits (83), Expect = 0.005
Identities = 13/46 (28%), Positives = 34/46 (73%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
+ K+E D EE E + ++E+ +++E +++++E+ +E++E+ ++D R
Sbjct: 387 EVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQKDER 432
Score = 34.4 bits (79), Expect = 0.018
Identities = 13/45 (28%), Positives = 31/45 (68%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
+K E +DE EE + + +E++ ++EE E++++E+ +E+++ R
Sbjct: 383 KKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKR 427
Score = 32.8 bits (75), Expect = 0.050
Identities = 11/46 (23%), Positives = 32/46 (69%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
K + E+ + + +EE+ ++EE E++++E+ +E++E+ +++E +
Sbjct: 389 KDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQKDERKK 434
Score = 32.8 bits (75), Expect = 0.065
Identities = 14/43 (32%), Positives = 30/43 (69%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
K+ E ++ + EE E + +EE+ +QEE E++++E+ +E++E
Sbjct: 383 KKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKE 425
Score = 32.5 bits (74), Expect = 0.069
Identities = 11/46 (23%), Positives = 29/46 (63%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+K K+ +D ++ E +++ + E+ E + +EE+ ++EE E+++
Sbjct: 371 LKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQ 416
Score = 32.5 bits (74), Expect = 0.073
Identities = 7/45 (15%), Positives = 25/45 (55%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+++E ++ ++ ++ ++ E +++ + EE E + +EE+
Sbjct: 365 DKRQELLKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQ 409
Score = 31.3 bits (71), Expect = 0.17
Identities = 11/46 (23%), Positives = 30/46 (65%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
++ K+ + +E + EE E + ++E+ ++EE E++++E+ +E+
Sbjct: 378 LQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADED 423
Score = 31.3 bits (71), Expect = 0.18
Identities = 13/46 (28%), Positives = 28/46 (60%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
KE ++ +D ++ E ++E + EE E + +EE+ ++EE E+ +
Sbjct: 372 KEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQK 417
Score = 29.4 bits (66), Expect = 0.85
Identities = 9/48 (18%), Positives = 31/48 (64%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
K ++ ++ + + E + +E E + +E++ ++EE E++++E+ ++ +
Sbjct: 377 KLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDK 424
>gnl|CDD|145361 pfam02161, Prog_receptor, Progesterone receptor.
Length = 456
Score = 35.8 bits (82), Expect = 0.005
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 126 EEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
+ +E+ +E+ Q++Q + E E E E
Sbjct: 54 QGQEEPDEKTQDQQSLSDVERAEPEVEASRGRG 86
Score = 35.4 bits (81), Expect = 0.008
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 124 QEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
Q +EE E+ ++Q+ + E E E E
Sbjct: 54 QGQEEPDEKTQDQQSLSDVERAEPEVEASRGRGEG 88
Score = 35.4 bits (81), Expect = 0.009
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 122 EEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+ QEE +E+ ++++ E E E E E S
Sbjct: 54 QGQEEPDEKTQDQQSLSDVERAEPEVEASRGRGEGS 89
Score = 31.9 bits (72), Expect = 0.13
Identities = 11/47 (23%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Query: 120 EDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE------EEDSRIL 160
+ +E+ +E+ Q+++ + + E E E E E+DS +L
Sbjct: 54 QGQEEPDEKTQDQQSLSDVERAEPEVEASRGRGEGSSRPPEKDSGLL 100
Score = 31.9 bits (72), Expect = 0.14
Identities = 8/34 (23%), Positives = 15/34 (44%)
Query: 124 QEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+ QEE +E+ + ++ + E E E E
Sbjct: 50 PRSCQGQEEPDEKTQDQQSLSDVERAEPEVEASR 83
>gnl|CDD|234352 TIGR03779, Bac_Flav_CT_M, Bacteroides conjugative transposon TraM
protein. Members of this protein family are designated
TraM and are found in a proposed transfer region of a
class of conjugative transposon found in the Bacteroides
lineage [Cellular processes, DNA transformation].
Length = 410
Score = 35.9 bits (83), Expect = 0.005
Identities = 12/40 (30%), Positives = 17/40 (42%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
E + DE++E E E+ E E E EE+ E
Sbjct: 138 EYPKTDEEKELLREVEELESRLATEPSPAPELEEQLALME 177
Score = 33.6 bits (77), Expect = 0.028
Identities = 8/37 (21%), Positives = 16/37 (43%)
Query: 118 EDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
+ ++E++ E +E E + E EE+ E
Sbjct: 141 KTDEEKELLREVEELESRLATEPSPAPELEEQLALME 177
Score = 32.8 bits (75), Expect = 0.062
Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 2/56 (3%)
Query: 93 QANWSRGNPMVSCVFWMIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEE 148
A + S F+ ++E+E E +E E E + EE+ E
Sbjct: 124 AAYRDINRELGS--FYEYPKTDEEKELLREVEELESRLATEPSPAPELEEQLALME 177
Score = 32.8 bits (75), Expect = 0.068
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
E DEE+E E EE E + E E EE+ E S
Sbjct: 138 EYPKTDEEKELLREVEELESRLATEPSPAPELEEQLALMEKS 179
Score = 31.6 bits (72), Expect = 0.13
Identities = 10/39 (25%), Positives = 16/39 (41%)
Query: 117 EEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
E ++E+E +E EE + E E EE+
Sbjct: 137 YEYPKTDEEKELLREVEELESRLATEPSPAPELEEQLAL 175
Score = 31.2 bits (71), Expect = 0.20
Identities = 8/38 (21%), Positives = 15/38 (39%)
Query: 119 DEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
E + +E++E + E+ E E E E+
Sbjct: 134 GSFYEYPKTDEEKELLREVEELESRLATEPSPAPELEE 171
Score = 31.2 bits (71), Expect = 0.20
Identities = 10/39 (25%), Positives = 16/39 (41%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
E + +E++E + EE E E E EE+
Sbjct: 137 YEYPKTDEEKELLREVEELESRLATEPSPAPELEEQLAL 175
Score = 31.2 bits (71), Expect = 0.20
Identities = 11/39 (28%), Positives = 15/39 (38%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEE 150
+ +EE E + EE E E E EE+ E
Sbjct: 139 YPKTDEEKELLREVEELESRLATEPSPAPELEEQLALME 177
Score = 26.6 bits (59), Expect = 6.6
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 127 EEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
E + +EE+E E EE E E +
Sbjct: 137 YEYPKTDEEKELLREVEELESRLATEPSPAPEL 169
>gnl|CDD|220112 pfam09110, HAND, HAND. The HAND domain adopts a secondary
structure consisting of four alpha helices, three of
which (H2, H3, H4) form an L-like configuration. Helix
H2 runs antiparallel to helices H3 and H4, packing
closely against helix H4, whilst helix H1 reposes in the
concave surface formed by these three helices and runs
perpendicular to them. The domain confers DNA and
nucleosome binding properties to the protein.
Length = 109
Score = 34.6 bits (80), Expect = 0.005
Identities = 19/45 (42%), Positives = 26/45 (57%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
K + D DEE EEE E + + EQE+ + E EEEEEE++
Sbjct: 60 KVPLDDVGDGDEEDEEEREAKRKLEQEKIDNAEPLTEEEEEEKQR 104
Score = 31.1 bits (71), Expect = 0.099
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
EE++E+ E + + EQE+ + E EEEEEE++ EE
Sbjct: 69 GDEEDEEEREAKRKLEQEKIDNAEPLTEEEEEEKQRLLEE 108
Score = 30.7 bits (70), Expect = 0.12
Identities = 18/43 (41%), Positives = 27/43 (62%)
Query: 118 EDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRIL 160
+D + EE+EE+ E + + EQE+ + E EEEEEE R+L
Sbjct: 64 DDVGDGDEEDEEEREAKRKLEQEKIDNAEPLTEEEEEEKQRLL 106
>gnl|CDD|227563 COG5238, RNA1, Ran GTPase-activating protein (RanGAP) involved in
mRNA processing and transport [Signal transduction
mechanisms / RNA processing and modification].
Length = 388
Score = 35.7 bits (82), Expect = 0.005
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
EK+E D E+ +EE E+E E +E EE E E E + +D
Sbjct: 336 EKQEGDVVTEESTDEESEDEVEIDESVIEEVAEMELLEVQVDD 378
Score = 33.4 bits (76), Expect = 0.037
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 117 EEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
EE DEE E+E E +E +E E E E + ++ E
Sbjct: 345 EESTDEESEDEVEIDESVIEEVAEMELLEVQVDDLAER 382
Score = 33.0 bits (75), Expect = 0.045
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 115 KEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEE 152
+E DE+ E E E ++ EE E E E + ++ E
Sbjct: 345 EESTDEESEDEVEIDESVIEEVAEMELLEVQVDDLAER 382
Score = 31.4 bits (71), Expect = 0.18
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+E +E+ ++E E +E EE + E E + ++ E E E
Sbjct: 345 EESTDEESEDEVEIDESVIEEVAEMELLEVQVDDLAERLAETE 387
Score = 31.1 bits (70), Expect = 0.22
Identities = 16/47 (34%), Positives = 21/47 (44%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRIL 160
E E+ E + EE EE E++ E +E EE E E E L
Sbjct: 333 EVVEKQEGDVVTEESTDEESEDEVEIDESVIEEVAEMELLEVQVDDL 379
Score = 29.5 bits (66), Expect = 0.83
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
E+ E E E++E + E+ EE E+E E +E EE
Sbjct: 326 EDIFEVVEVVEKQEGDVVTEESTDEESEDEVEIDESVIEE 365
Score = 28.7 bits (64), Expect = 1.5
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 118 EDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
ED E E E+QE + EE +EE E+E E +E +
Sbjct: 326 EDIFEVVEVVEKQEGDVVTEESTDEESEDEVEIDESVIEEV 366
Score = 28.0 bits (62), Expect = 2.3
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
++ E E E++E + EE EE E+E E +E EE E
Sbjct: 326 EDIFEVVEVVEKQEGDVVTEESTDEESEDEVEIDESVIEEVAEME 370
Score = 26.4 bits (58), Expect = 7.4
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 119 DEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
D E+ E E E++E + EE +EE E+E E ++S I
Sbjct: 323 DYYEDIFEVVEVVEKQEGDVVTEESTDEESEDEVEIDESVI 363
>gnl|CDD|218003 pfam04281, Tom22, Mitochondrial import receptor subunit Tom22. The
mitochondrial protein translocase family, which is
responsible for movement of nuclear encoded pre-proteins
into mitochondria, is very complex with at least 19
components. These proteins include several chaperone
proteins, four proteins of the outer membrane
translocase (Tom) import receptor, five proteins of the
Tom channel complex, five proteins of the inner membrane
translocase (Tim) and three "motor" proteins. This
family represents the Tom22 proteins. The N terminal
region of Tom22 has been shown to have chaperone-like
activity, and the C terminal region faces the
intermembrane face.
Length = 136
Score = 34.5 bits (80), Expect = 0.006
Identities = 11/41 (26%), Positives = 24/41 (58%)
Query: 117 EEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
E EDE +E+ + QEE ++++E++ + + + +DS
Sbjct: 5 TEVEDETFQEKPAAPKNLAQEESDDDDEDDTDTDSDISDDS 45
Score = 30.7 bits (70), Expect = 0.18
Identities = 7/41 (17%), Positives = 23/41 (56%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
E EDE +++ + +E+ + ++E++ + + + ++ D
Sbjct: 6 EVEDETFQEKPAAPKNLAQEESDDDDEDDTDTDSDISDDSD 46
Score = 29.9 bits (68), Expect = 0.29
Identities = 9/46 (19%), Positives = 24/46 (52%)
Query: 109 MIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
M+K E E+E E+ + +EE ++ E++ + + + ++ +
Sbjct: 1 MVKLTEVEDETFQEKPAAPKNLAQEESDDDDEDDTDTDSDISDDSD 46
Score = 29.1 bits (66), Expect = 0.55
Identities = 5/41 (12%), Positives = 22/41 (53%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
E +++ QE+ + ++E +++E++ + + + ++
Sbjct: 5 TEVEDETFQEKPAAPKNLAQEESDDDDEDDTDTDSDISDDS 45
Score = 28.4 bits (64), Expect = 1.1
Identities = 9/37 (24%), Positives = 22/37 (59%)
Query: 123 EQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
+ E+E +E+ + +EE ++++E++ + DS I
Sbjct: 5 TEVEDETFQEKPAAPKNLAQEESDDDDEDDTDTDSDI 41
>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27. This protein forms
the C subunit of DNA polymerase delta. It carries the
essential residues for binding to the Pol1 subunit of
polymerase alpha, from residues 293-332, which are
characterized by the motif D--G--VT, referred to as the
DPIM motif. The first 160 residues of the protein form
the minimal domain for binding to the B subunit, Cdc1,
of polymerase delta, the final 10 C-terminal residues,
362-372, being the DNA sliding clamp, PCNA, binding
motif.
Length = 427
Score = 35.6 bits (82), Expect = 0.007
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 97 SRGNPMVSCVFWMIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+ N M S F+ K KEK+E+ E E +EE EEE + + E+E E +E+ED
Sbjct: 213 KKSNIMSS--FFKKKTKEKKEKKEASESTVKEESEEESGKRDVILEDESAEPTGLDEDED 270
Score = 34.8 bits (80), Expect = 0.011
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+K ++E++++E + E EEEE EE E ++EEE+EE S
Sbjct: 298 LKKMMEDEDEDEEMEIVPESPVEEEESEEPEPPPLPKKEEEKEEVTVS 345
Score = 33.3 bits (76), Expect = 0.046
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 113 KEKEEE----DEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
KEK + EDE+++EE E E EE+E EE E ++EEE +
Sbjct: 292 KEKRKRLKKMMEDEDEDEEMEIVPESPVEEEESEEPEPPPLPKKEEEKEEV 342
Score = 32.5 bits (74), Expect = 0.081
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 9/54 (16%)
Query: 110 IKPKEKEEEDED---------EEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
E E+EDE EE+ EE+E+E+ + ++ E+E+E+EE E E
Sbjct: 263 TGLDEDEDEDEPKPSGERSDSEEETEEKEKEKRKRLKKMMEDEDEDEEMEIVPE 316
Score = 32.1 bits (73), Expect = 0.097
Identities = 14/46 (30%), Positives = 28/46 (60%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
K+ E+++++E+ E + EE+E +E E ++EEE+EE +
Sbjct: 299 KKMMEDEDEDEEMEIVPESPVEEEESEEPEPPPLPKKEEEKEEVTV 344
Score = 32.1 bits (73), Expect = 0.10
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+ KEK+E E +EE EE+ + + ++E E +E+E+E++
Sbjct: 228 EKKEKKEASESTVKEESEEESGKRDVILEDESAEPTGLDEDEDEDE 273
Score = 32.1 bits (73), Expect = 0.11
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEE--EEEEEEEDSRILI 161
E+EDEDE + E + EEE EE+E+E+ + + E+E+E++ ++
Sbjct: 261 EPTGLDEDEDEDEPKPSGERSDSEEETEEKEKEKRKRLKKMMEDEDEDEEMEIV 314
Score = 31.3 bits (71), Expect = 0.18
Identities = 16/44 (36%), Positives = 27/44 (61%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
E+ EE E E+++ ++ E+E+++E+ E E EEEE EE
Sbjct: 285 EETEEKEKEKRKRLKKMMEDEDEDEEMEIVPESPVEEEESEEPE 328
Score = 31.0 bits (70), Expect = 0.22
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEE----EQEEQEEEEEEEEEEEEEEEEDSR 158
E D +EE EE+E+++ + ++E E+EE E E EEE+S
Sbjct: 274 PKPSGERSDSEEETEEKEKEKRKRLKKMMEDEDEDEEMEIVPESPVEEEESE 325
Score = 31.0 bits (70), Expect = 0.25
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 11/57 (19%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEE-----------EEEEEEEEEEED 156
+E EEE + E+E E +E E+E+E EE EE+E+E+
Sbjct: 240 VKEESEEESGKRDVILEDESAEPTGLDEDEDEDEPKPSGERSDSEEETEEKEKEKRK 296
Score = 29.8 bits (67), Expect = 0.54
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 109 MIKPKEKEEEDEDEEQEEEE-EQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+ +EE +E E+++ + ++ E+E E++E E E EEEE E+
Sbjct: 278 GERSDSEEETEEKEKEKRKRLKKMMEDEDEDEEMEIVPESPVEEEESEEP 327
Score = 27.5 bits (61), Expect = 3.7
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 12/62 (19%)
Query: 110 IKPKEKE--EEDEDEEQEEEEEQEEEEEQEEQEEEEE----------EEEEEEEEEEEDS 157
++E EE + E+E E +E E+E+E EEE EE+E+E+
Sbjct: 237 ESTVKEESEEESGKRDVILEDESAEPTGLDEDEDEDEPKPSGERSDSEEETEEKEKEKRK 296
Query: 158 RI 159
R+
Sbjct: 297 RL 298
>gnl|CDD|222571 pfam14153, Spore_coat_CotO, Spore coat protein CotO. Bacillus
spores are protected by a protein shell consisting of
over 50 different polypeptides, known as the coat. This
family of proteins has an important morphogenetic role
in coat assembly, it is involved in the assembly of at
least 5 different coat proteins including CotB, CotG,
CotS, CotSA and CotW. It is likely to act at a late
stage of coat assembly.
Length = 185
Score = 35.2 bits (81), Expect = 0.007
Identities = 21/50 (42%), Positives = 34/50 (68%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
+ ++K E +E E+++E E E E+ E+QE+EE +EEE+EEE ED +
Sbjct: 53 KEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEEEKEEEAEDVKQ 102
Score = 34.0 bits (78), Expect = 0.017
Identities = 21/45 (46%), Positives = 33/45 (73%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
K KE+E++ E EE E+E+E E E ++ E++E+EE +EEE+EE
Sbjct: 51 KSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEEEKEE 95
Score = 33.3 bits (76), Expect = 0.033
Identities = 19/45 (42%), Positives = 30/45 (66%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
K +EKE DE + +EEE++ E EE E+++E E E E+ E++E
Sbjct: 39 KEEEKENSDEHVKSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQE 83
Score = 32.5 bits (74), Expect = 0.054
Identities = 18/42 (42%), Positives = 31/42 (73%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
EKE+E + E+E+ EQ+E+EE ++EE+EEE E+ +++E
Sbjct: 65 EKEKEAGEPEREDIAEQQEKEEIAQEEEKEEEAEDVKQQEVF 106
Score = 32.1 bits (73), Expect = 0.079
Identities = 17/46 (36%), Positives = 29/46 (63%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
K + +E E E E E E E E++++E+ +EEE+EEE E+ ++
Sbjct: 58 KIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEEEKEEEAEDVKQQ 103
Score = 31.3 bits (71), Expect = 0.12
Identities = 16/43 (37%), Positives = 28/43 (65%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
KEKE + + E E++++EE QEE++EEE E+ +++E
Sbjct: 65 EKEKEAGEPEREDIAEQQEKEEIAQEEEKEEEAEDVKQQEVFS 107
Score = 31.3 bits (71), Expect = 0.12
Identities = 18/43 (41%), Positives = 31/43 (72%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+E E+E E E E E+ E++E++E +EEE+EEE E+ +++E
Sbjct: 62 EEAEKEKEAGEPEREDIAEQQEKEEIAQEEEKEEEAEDVKQQE 104
Score = 31.0 bits (70), Expect = 0.19
Identities = 19/48 (39%), Positives = 30/48 (62%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
I K E+E+E E +E + +EEE++ E EE E+E+E E E E+ +
Sbjct: 32 IIKKADEKEEEKENSDEHVKSKEEEQKIEYEEAEKEKEAGEPEREDIA 79
Score = 30.6 bits (69), Expect = 0.22
Identities = 16/46 (34%), Positives = 31/46 (67%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
++++E E E ++ E+QE+EE +E+E+EEE E+ +++E R
Sbjct: 65 EKEKEAGEPEREDIAEQQEKEEIAQEEEKEEEAEDVKQQEVFSFKR 110
Score = 29.8 bits (67), Expect = 0.39
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
K KEEE + E +E E+E+E E + E E++E+EE +EEE+
Sbjct: 49 HVKSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEEEK 93
Score = 29.4 bits (66), Expect = 0.53
Identities = 15/46 (32%), Positives = 29/46 (63%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
+++EE++ +E + +E+E++ E EE E+E+E E E E+ E
Sbjct: 38 EKEEEKENSDEHVKSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQE 83
Score = 28.6 bits (64), Expect = 1.0
Identities = 14/44 (31%), Positives = 29/44 (65%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
+ +++ E E E+ E++E+EE ++EE+EEE E+ +++E
Sbjct: 64 AEKEKEAGEPEREDIAEQQEKEEIAQEEEKEEEAEDVKQQEVFS 107
>gnl|CDD|240331 PTZ00254, PTZ00254, 40S ribosomal protein SA; Provisional.
Length = 249
Score = 35.4 bits (82), Expect = 0.007
Identities = 12/38 (31%), Positives = 16/38 (42%)
Query: 119 DEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
D +E +E+EE E E+ E EE EE
Sbjct: 206 DPEEAEEKEEAAAETAGVEDAAAAAAEAEEGEEWVAAA 243
Score = 32.3 bits (74), Expect = 0.068
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 121 DEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
D E+ EE+E+ E ++ E EE EE +
Sbjct: 206 DPEEAEEKEEAAAETAGVEDAAAAAAEAEEGEEWVAA 242
>gnl|CDD|220284 pfam09538, FYDLN_acid, Protein of unknown function (FYDLN_acid).
Members of this family are bacterial proteins with a
conserved motif [KR]FYDLN, sometimes flanked by a pair
of CXXC motifs, followed by a long region of low
complexity sequence in which roughly half the residues
are Asp and Glu, including multiple runs of five or more
acidic residues. The function of members of this family
is unknown.
Length = 104
Score = 33.8 bits (78), Expect = 0.008
Identities = 7/47 (14%), Positives = 31/47 (65%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
K + + ED +++E+E++E++ + +++++++++ + +++D
Sbjct: 42 KSRAPAADAEDAAKKDEDEEDEDDVVLDDDDDDDDDDDLPDLDDDDV 88
Score = 31.1 bits (71), Expect = 0.071
Identities = 6/46 (13%), Positives = 29/46 (63%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+ + ED ++ E+EE++++ ++ +++++++ + ++++ D
Sbjct: 44 RAPAADAEDAAKKDEDEEDEDDVVLDDDDDDDDDDDLPDLDDDDVD 89
Score = 30.4 bits (69), Expect = 0.14
Identities = 4/48 (8%), Positives = 29/48 (60%)
Query: 109 MIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
E + +++E++E++ ++++ ++ +++ + ++++ + ++D
Sbjct: 46 PAADAEDAAKKDEDEEDEDDVVLDDDDDDDDDDDLPDLDDDDVDLDDD 93
Score = 30.4 bits (69), Expect = 0.17
Identities = 7/45 (15%), Positives = 28/45 (62%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
K + + E+ +++E EE+E+ +++++++++++ + +D
Sbjct: 41 AKSRAPAADAEDAAKKDEDEEDEDDVVLDDDDDDDDDDDLPDLDD 85
Score = 30.4 bits (69), Expect = 0.17
Identities = 5/48 (10%), Positives = 29/48 (60%)
Query: 109 MIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
++ +DE++E+E++ +++ ++ ++++ + ++++ + +D
Sbjct: 45 APAADAEDAAKKDEDEEDEDDVVLDDDDDDDDDDDLPDLDDDDVDLDD 92
Score = 29.6 bits (67), Expect = 0.33
Identities = 7/46 (15%), Positives = 31/46 (67%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
++ ++DEDEE E++ +++++ ++ ++ + ++++ + +++D
Sbjct: 49 DAEDAAKKDEDEEDEDDVVLDDDDDDDDDDDLPDLDDDDVDLDDDD 94
Score = 29.2 bits (66), Expect = 0.38
Identities = 4/47 (8%), Positives = 28/47 (59%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+ ++ +++E+EE E++ ++ ++++++++ + ++++
Sbjct: 43 SRAPAADAEDAAKKDEDEEDEDDVVLDDDDDDDDDDDLPDLDDDDVD 89
Score = 29.2 bits (66), Expect = 0.41
Identities = 6/46 (13%), Positives = 32/46 (69%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
K +++E+ED+ +++++ ++++ + +++ + ++++++ E+D
Sbjct: 56 KDEDEEDEDDVVLDDDDDDDDDDDLPDLDDDDVDLDDDDDDFLEDD 101
Score = 28.4 bits (64), Expect = 0.66
Identities = 2/44 (4%), Positives = 30/44 (68%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
++++++E++++ +++++ ++ + + ++++ + ++++D
Sbjct: 52 DAAKKDEDEEDEDDVVLDDDDDDDDDDDLPDLDDDDVDLDDDDD 95
Score = 27.3 bits (61), Expect = 1.6
Identities = 8/50 (16%), Positives = 33/50 (66%), Gaps = 4/50 (8%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEE----EEEEEEEEEEEED 156
K+++EEDED+ ++++ +++++ +++ ++++++ E+++D
Sbjct: 54 AKKDEDEEDEDDVVLDDDDDDDDDDDLPDLDDDDVDLDDDDDDFLEDDDD 103
Score = 26.5 bits (59), Expect = 3.3
Identities = 4/44 (9%), Positives = 28/44 (63%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
+ +D+D++ ++++ + +++ + ++++++ E++++E
Sbjct: 61 EDEDDVVLDDDDDDDDDDDLPDLDDDDVDLDDDDDDFLEDDDDE 104
Score = 26.5 bits (59), Expect = 3.9
Identities = 10/45 (22%), Positives = 25/45 (55%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
PK EE + + + E+ ++ E+EE+E++ +++++D
Sbjct: 30 PKCGEEVPPEVAKSRAPAADAEDAAKKDEDEEDEDDVVLDDDDDD 74
>gnl|CDD|221581 pfam12446, DUF3682, Protein of unknown function (DUF3682). This
domain family is found in eukaryotes, and is typically
between 125 and 136 amino acids in length.
Length = 133
Score = 34.4 bits (79), Expect = 0.009
Identities = 14/38 (36%), Positives = 25/38 (65%)
Query: 115 KEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEE 152
+E+E+EE+E E++Q+ +E Q +Q ++ E E EE
Sbjct: 94 TRQEEEEEEEENEKQQQSDEAQVQQHQQHEHPAENGEE 131
Score = 32.9 bits (75), Expect = 0.024
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 120 EDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
QEEEEE+EE E+Q++ +E + ++ ++ E E+
Sbjct: 92 GHTRQEEEEEEEENEKQQQSDEAQVQQHQQHEHPAENGE 130
Score = 32.5 bits (74), Expect = 0.041
Identities = 14/38 (36%), Positives = 25/38 (65%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEE 150
+EEE+E+EE E++++ +E + Q+ Q+ E E EE
Sbjct: 94 TRQEEEEEEEENEKQQQSDEAQVQQHQQHEHPAENGEE 131
Score = 30.2 bits (68), Expect = 0.26
Identities = 13/40 (32%), Positives = 25/40 (62%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
++E+EE+EE E+Q++ +E + Q+ ++ E E EE
Sbjct: 92 GHTRQEEEEEEEENEKQQQSDEAQVQQHQQHEHPAENGEE 131
Score = 30.2 bits (68), Expect = 0.28
Identities = 12/43 (27%), Positives = 24/43 (55%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
P+ +EE+EEEEE E+Q++ +E + ++ ++ E
Sbjct: 81 PEGPAGTTSGTGHTRQEEEEEEEENEKQQQSDEAQVQQHQQHE 123
Score = 29.0 bits (65), Expect = 0.63
Identities = 12/40 (30%), Positives = 24/40 (60%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
++EE+EEEE +++++ E Q ++ ++ E E EE
Sbjct: 92 GHTRQEEEEEEEENEKQQQSDEAQVQQHQQHEHPAENGEE 131
>gnl|CDD|221185 pfam11719, Drc1-Sld2, DNA replication and checkpoint protein.
Genome duplication is precisely regulated by
cyclin-dependent kinases CDKs, which bring about the
onset of S phase by activating replication origins and
then prevent relicensing of origins until mitosis is
completed. The optimum sequence motif for CDK
phosphorylation is S/T-P-K/R-K/R, and Drc1-Sld2 is found
to have at least 11 potential phosphorylation sites.
Drc1 is required for DNA synthesis and S-M replication
checkpoint control. Drc1 associates with Cdc2 and is
phosphorylated at the onset of S phase when Cdc2 is
activated. Thus Cdc2 promotes DNA replication by
phosphorylating Drc1 and regulating its association with
Cut5. Sld2 and Sld3 represent the minimal set of S-CDK
substrates required for DNA replication.
Length = 397
Score = 35.2 bits (81), Expect = 0.009
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 115 KEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
+EEE D+E + E E EE EEE + + +E
Sbjct: 241 QEEESIDDELDVLREIEAEEAGIGPIEEEVVDSQAANDEP 280
Score = 33.6 bits (77), Expect = 0.029
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 124 QEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
QEEE +E + E E EE EEE +
Sbjct: 241 QEEESIDDELDVLREIEAEEAGIGPIEEEVVDS 273
Score = 33.6 bits (77), Expect = 0.033
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 126 EEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
EEE ++E + + E EE EEE DS
Sbjct: 242 EEESIDDELDVLREIEAEEAGIGPIEEEVVDS 273
Score = 32.8 bits (75), Expect = 0.050
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 120 EDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
E+E ++E + E E EE EEE + + D
Sbjct: 242 EEESIDDELDVLREIEAEEAGIGPIEEEVVDSQAAND 278
Score = 32.1 bits (73), Expect = 0.090
Identities = 10/40 (25%), Positives = 19/40 (47%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEE 152
+E+E D++ + E E EE +EE + + +E
Sbjct: 241 QEEESIDDELDVLREIEAEEAGIGPIEEEVVDSQAANDEP 280
Score = 31.7 bits (72), Expect = 0.15
Identities = 8/42 (19%), Positives = 21/42 (50%)
Query: 109 MIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEE 150
+++ +E +++ D +E E E+ EE+ + + +E
Sbjct: 239 LVQEEESIDDELDVLREIEAEEAGIGPIEEEVVDSQAANDEP 280
Score = 29.0 bits (65), Expect = 1.0
Identities = 13/65 (20%), Positives = 28/65 (43%), Gaps = 15/65 (23%)
Query: 108 WMIKPKEKEEEDE---------DEEQEEEEEQ------EEEEEQEEQEEEEEEEEEEEEE 152
++P + DE +E + +E+ E+ E+E++EE +EE E
Sbjct: 296 VKMRPVRAKPSDEPSLPESDIHEEIPKLDEKSLSEFLGYMGGIDEDDEDEDDEESKEEVE 355
Query: 153 EEEDS 157
+++
Sbjct: 356 KKQKV 360
>gnl|CDD|236080 PRK07734, motB, flagellar motor protein MotB; Reviewed.
Length = 259
Score = 34.7 bits (80), Expect = 0.010
Identities = 10/36 (27%), Positives = 23/36 (63%)
Query: 109 MIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEE 144
KP++++E + E+ +++EE E ++++E EE
Sbjct: 71 DQKPEDEKELSASSLEAEQAKKKEEAEAKKKKEMEE 106
Score = 33.2 bits (76), Expect = 0.033
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEE 149
+ EDE E E E+ +++EE E ++++E EE
Sbjct: 73 KPEDEKELSASSLEAEQAKKKEEAEAKKKKEMEE 106
Score = 32.0 bits (73), Expect = 0.11
Identities = 13/48 (27%), Positives = 28/48 (58%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
++ E+E E E EQ +++E+ E ++++E EE + +++ D I
Sbjct: 71 DQKPEDEKELSASSLEAEQAKKKEEAEAKKKKEMEELKAVQKKIDQYI 118
>gnl|CDD|237744 PRK14521, rpsP, 30S ribosomal protein S16; Provisional.
Length = 186
Score = 34.4 bits (79), Expect = 0.011
Identities = 15/39 (38%), Positives = 17/39 (43%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEE 151
EK+ + EE EEEE EE EE EE E
Sbjct: 148 AEKKAAEAAAVAAEEAAAAEEEEAEEAPAEEAPAEESAE 186
Score = 34.4 bits (79), Expect = 0.012
Identities = 17/47 (36%), Positives = 20/47 (42%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
K E E E++ E EE EEEE EE EE E+S
Sbjct: 138 KVNEARAEAVAEKKAAEAAAVAAEEAAAAEEEEAEEAPAEEAPAEES 184
Score = 31.7 bits (72), Expect = 0.10
Identities = 12/40 (30%), Positives = 17/40 (42%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEE 149
+ K+ E +E +EEE E+ EE EE E
Sbjct: 147 VAEKKAAEAAAVAAEEAAAAEEEEAEEAPAEEAPAEESAE 186
Score = 31.7 bits (72), Expect = 0.11
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
EK+ + E E++ E +E EEEE EE E+
Sbjct: 136 EKKVNEARAEAVAEKKAAEAAAVAAEEAAAAEEEEAEEAPAEE 178
Score = 30.9 bits (70), Expect = 0.19
Identities = 14/46 (30%), Positives = 17/46 (36%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+ E E + E EE E+EE EE EE EE
Sbjct: 139 VNEARAEAVAEKKAAEAAAVAAEEAAAAEEEEAEEAPAEEAPAEES 184
Score = 30.9 bits (70), Expect = 0.20
Identities = 13/44 (29%), Positives = 18/44 (40%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
+ + E+ E E+ E+EE EE EE EE E
Sbjct: 143 RAEAVAEKKAAEAAAVAAEEAAAAEEEEAEEAPAEEAPAEESAE 186
Score = 30.5 bits (69), Expect = 0.23
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEE---EEEEE 155
+ + E +++ E EE +EEE EE EE EE E
Sbjct: 141 EARAEAVAEKKAAEAAAVAAEEAAAAEEEEAEEAPAEEAPAEESAE 186
Score = 28.6 bits (64), Expect = 1.2
Identities = 13/43 (30%), Positives = 18/43 (41%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
K+ E + E++ + EE EEEE EE EE
Sbjct: 137 KKVNEARAEAVAEKKAAEAAAVAAEEAAAAEEEEAEEAPAEEA 179
Score = 27.8 bits (62), Expect = 1.9
Identities = 10/46 (21%), Positives = 19/46 (41%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
K K + + ++ E E++ E + E E++ E EE
Sbjct: 117 KKDKLSKAKKAAKKAALEAEKKVNEARAEAVAEKKAAEAAAVAAEE 162
Score = 27.4 bits (61), Expect = 3.0
Identities = 14/45 (31%), Positives = 18/45 (40%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
K E E + E E E++ + EE EEEE EE
Sbjct: 129 KKAALEAEKKVNEARAEAVAEKKAAEAAAVAAEEAAAAEEEEAEE 173
Score = 26.3 bits (58), Expect = 7.4
Identities = 13/44 (29%), Positives = 18/44 (40%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
K+ E E + E E E++ E EE EEEE +
Sbjct: 129 KKAALEAEKKVNEARAEAVAEKKAAEAAAVAAEEAAAAEEEEAE 172
>gnl|CDD|224969 COG2058, RPP1A, Ribosomal protein L12E/L44/L45/RPP1/RPP2
[Translation, ribosomal structure and biogenesis].
Length = 109
Score = 33.5 bits (77), Expect = 0.012
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 126 EEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
E E E EEEE+EEE EEE +D
Sbjct: 71 AAAAAGAEAAAEADEAEEEEKEEEAEEESDD 101
Score = 33.1 bits (76), Expect = 0.018
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 124 QEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
E + ++ EEEE+EEE EEE ++D
Sbjct: 70 AAAAAAGAEAAAEADEAEEEEKEEEAEEESDDD 102
Score = 32.8 bits (75), Expect = 0.025
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 120 EDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEE 151
E E +E +EE++EEE EEE +++
Sbjct: 71 AAAAAGAEAAAEADEAEEEEKEEEAEEESDDD 102
Score = 32.4 bits (74), Expect = 0.031
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 132 EEEEQEEQEEEEEEEEEEEEEEEEDS 157
E E +E EEEE+EEE EEE D
Sbjct: 76 GAEAAAEADEAEEEEKEEEAEEESDD 101
Score = 32.0 bits (73), Expect = 0.038
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 127 EEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
E E +E EEEE+EEE EEE +++
Sbjct: 74 AAGAEAAAEADEAEEEEKEEEAEEESDDDM 103
Score = 30.4 bits (69), Expect = 0.17
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 123 EQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
+ E E +EEE+EEE EEE +++
Sbjct: 71 AAAAAGAEAAAEADEAEEEEKEEEAEEESDDD 102
Score = 30.1 bits (68), Expect = 0.21
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 122 EEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
E E ++ E+EE+EEE EEE +++
Sbjct: 71 AAAAAGAEAAAEADEAEEEEKEEEAEEESDDD 102
Score = 30.1 bits (68), Expect = 0.23
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEE 142
E E E EEE++EEE +EE +++
Sbjct: 71 AAAAAGAEAAAEADEAEEEEKEEEAEEESDDD 102
Score = 29.7 bits (67), Expect = 0.30
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 129 EQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+ E +E EEEE+EEE EE+S
Sbjct: 71 AAAAAGAEAAAEADEAEEEEKEEEAEEES 99
Score = 28.9 bits (65), Expect = 0.58
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 117 EEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEE 148
+ E E EEE++E+E EEE +++
Sbjct: 71 AAAAAGAEAAAEADEAEEEEKEEEAEEESDDD 102
Score = 27.4 bits (61), Expect = 2.1
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEE 144
E + +E E+EE+EE+ E+E +++
Sbjct: 71 AAAAAGAEAAAEADEAEEEEKEEEAEEESDDD 102
>gnl|CDD|162338 TIGR01398, FlhA, flagellar biosynthesis protein FlhA. This model
describes flagellar biosynthesis protein FlhA, one of a
large number of genes associated with the biosynthesis
of functional bacterial flagella. Homologs of many such
proteins, including FlhA, function in type III protein
secretion systems. A separate model describes InvA
(Salmonella enterica), LcrD (Yersinia enterocolitica),
HrcV (Xanthomonas), etc., all of which score below the
noise cutoff for this model [Cellular processes,
Chemotaxis and motility].
Length = 678
Score = 34.9 bits (81), Expect = 0.013
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 121 DEEQEEEEEQEEEEEQEEQEEEEEEEEEE 149
+QEEE E + QEE EEEEE +
Sbjct: 312 RSKQEEEAAAEAAKAQEEAAEEEEESIND 340
Score = 33.4 bits (77), Expect = 0.039
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 127 EEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+QEEE E + +EE EEEEE +
Sbjct: 312 RSKQEEEAAAEAAKAQEEAAEEEEESIND 340
Score = 33.4 bits (77), Expect = 0.041
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 128 EEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
++EEE E + +EE EEEEE D
Sbjct: 312 RSKQEEEAAAEAAKAQEEAAEEEEESINDI 341
Score = 32.6 bits (75), Expect = 0.081
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 124 QEEEEEQEEEEEQEEQEEEEEEEEEEEEE 152
+ ++EE+ E + QEE EEEEE +
Sbjct: 312 RSKQEEEAAAEAAKAQEEAAEEEEESIND 340
Score = 31.5 bits (72), Expect = 0.21
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 130 QEEEEEQEEQEEEEEEEEEEEEEEEEDSRIL 160
+ ++EE+ E + +EE EEEEE + IL
Sbjct: 312 RSKQEEEAAAEAAKAQEEAAEEEEESINDIL 342
Score = 31.1 bits (71), Expect = 0.24
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 108 WMIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQE 140
++ + ++EEE E + +EE EEEE+ +
Sbjct: 308 YLRRRSKQEEEAAAEAAKAQEEAAEEEEESIND 340
Score = 29.9 bits (68), Expect = 0.65
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 130 QEEEEEQEEQEEEEEEEEEEEEEEEED 156
+ ++E+E E + +EE EEEEE
Sbjct: 311 RRSKQEEEAAAEAAKAQEEAAEEEEES 337
Score = 29.5 bits (67), Expect = 0.68
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 108 WMIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEE 141
W ++ + K+EE+ E + +E+ EEE+E +
Sbjct: 307 WYLRRRSKQEEEAAAEAAKAQEEAAEEEEESIND 340
Score = 29.5 bits (67), Expect = 0.80
Identities = 9/37 (24%), Positives = 19/37 (51%)
Query: 107 FWMIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEE 143
F + + +++E+ E + QEE E+EE+ +
Sbjct: 304 FLAWYLRRRSKQEEEAAAEAAKAQEEAAEEEEESIND 340
Score = 28.4 bits (64), Expect = 1.8
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEE 147
K +E+ + + QEE E+EEE + ++ E E
Sbjct: 314 KQEEEAAAEAAKAQEEAAEEEEESINDILALDDLELE 350
>gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated.
Length = 746
Score = 34.8 bits (81), Expect = 0.013
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 118 EDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
E+E+ +EE + + EEE + E EE E EEE + E +
Sbjct: 39 EEEEARKEEAKREAEEEAKAEAEEAAAAEAEEEAKAEAAAA 79
Score = 34.8 bits (81), Expect = 0.014
Identities = 14/50 (28%), Positives = 24/50 (48%)
Query: 109 MIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
++ +E +E+ E EEE + E EE + EEE + E E++
Sbjct: 37 TVEEEEARKEEAKREAEEEAKAEAEEAAAAEAEEEAKAEAAAAAPAEEAA 86
>gnl|CDD|237629 PRK14160, PRK14160, heat shock protein GrpE; Provisional.
Length = 211
Score = 34.3 bits (79), Expect = 0.013
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
K E E++ +E E +EE++ +EE E EE E+EE E+ E+S
Sbjct: 7 DAKHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNE 53
Score = 34.3 bits (79), Expect = 0.015
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
K + EE+ E + +EE++ +EE+ E +E E+EE E+ EE E
Sbjct: 9 KHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVK 55
Score = 34.0 bits (78), Expect = 0.020
Identities = 17/51 (33%), Positives = 30/51 (58%)
Query: 109 MIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
M + KE E+++E++ +EE+ E EE ++E+ E+ EE E + EE
Sbjct: 13 MEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKDEN 63
Score = 33.6 bits (77), Expect = 0.024
Identities = 18/45 (40%), Positives = 30/45 (66%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+ K+ + E+ E++ +E E +EE + +EE+ E EE E+EE EDS
Sbjct: 4 ECKDAKHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDS 48
Score = 33.2 bits (76), Expect = 0.031
Identities = 19/44 (43%), Positives = 27/44 (61%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
EKE +D E EE+ +E E +EE + +EE+ E EE E+EE
Sbjct: 2 EKECKDAKHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEII 45
Score = 32.8 bits (75), Expect = 0.043
Identities = 14/42 (33%), Positives = 29/42 (69%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
+++ ++ + E EE+ +E E ++E++ +EE+ E EE E+EE
Sbjct: 2 EKECKDAKHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEE 43
Score = 32.8 bits (75), Expect = 0.053
Identities = 20/47 (42%), Positives = 28/47 (59%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
E EED +E E +EE + +EE E EE E+EE E+ EE + +I
Sbjct: 10 HENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKI 56
Score = 32.4 bits (74), Expect = 0.057
Identities = 18/51 (35%), Positives = 32/51 (62%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRILI 161
K + E +ED +E E ++E++ ++E+ E EE E+EE E+ EE + + I
Sbjct: 6 KDAKHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKI 56
Score = 30.9 bits (70), Expect = 0.21
Identities = 13/42 (30%), Positives = 25/42 (59%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
E++ + + E E++ +E E +EE++ +EE+ E EE E
Sbjct: 1 MEKECKDAKHENMEEDCCKENENKEEDKGKEEDLEFEEIEKE 42
Score = 30.5 bits (69), Expect = 0.28
Identities = 12/45 (26%), Positives = 30/45 (66%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
+ +E++ ++E+ E +E E+E+ ++ EE E + EE ++E+++
Sbjct: 21 NENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKDENNK 65
Score = 30.1 bits (68), Expect = 0.39
Identities = 13/46 (28%), Positives = 28/46 (60%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
++E + + + EE+ +E E +E+++ +EE+ E EE E+E+
Sbjct: 1 MEKECKDAKHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIE 46
Score = 30.1 bits (68), Expect = 0.41
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
K KEE+ E EE E+EE E+ EE E + EE ++E + +EE
Sbjct: 28 KGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKDENNKLKEE 69
Score = 29.0 bits (65), Expect = 0.83
Identities = 15/43 (34%), Positives = 27/43 (62%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
E + ++ED E EE E++E E+ EE E + EE ++E + ++
Sbjct: 26 EDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKDENNKLKE 68
Score = 28.2 bits (63), Expect = 1.5
Identities = 14/44 (31%), Positives = 29/44 (65%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
+EED + E+ E+EE E+ E+ + + EE ++E + +EE+ ++
Sbjct: 30 KEEDLEFEEIEKEEIIEDSEESNEVKIEELKDENNKLKEENKKL 73
Score = 28.2 bits (63), Expect = 1.6
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
E EE +++E E+ EE E + +E ++E + +EE ++ E E
Sbjct: 34 LEFEEIEKEEIIEDSEESNEVKIEELKDENNKLKEENKKLENE 76
Score = 26.6 bits (59), Expect = 5.7
Identities = 12/44 (27%), Positives = 27/44 (61%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
++E+ + +E ++EE ++ EE E + EE ++E + +EE +
Sbjct: 28 KGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKDENNKLKEENK 71
Score = 26.3 bits (58), Expect = 6.5
Identities = 15/50 (30%), Positives = 33/50 (66%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRIL 160
K ++K +E++ E +E E+E+ E+ +E E + EE ++E + +E+++ L
Sbjct: 24 KEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKDENNKLKEENKKL 73
>gnl|CDD|237799 PRK14715, PRK14715, DNA polymerase II large subunit; Provisional.
Length = 1627
Score = 34.8 bits (80), Expect = 0.013
Identities = 18/51 (35%), Positives = 32/51 (62%)
Query: 108 WMIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
W+ + KEK+EE ++E+ EE + +E +EE EE+E+ E E+ E + +
Sbjct: 275 WLKELKEKKEEKDEEKSEEVKTEEVDEEFEEEEKGFYYELYEKVNIEANKK 325
Score = 31.4 bits (71), Expect = 0.21
Identities = 16/38 (42%), Positives = 28/38 (73%)
Query: 118 EDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
E D +E +E++EE++E++ +E + EE +EE EEEE+
Sbjct: 271 EGWDWLKELKEKKEEKDEEKSEEVKTEEVDEEFEEEEK 308
Score = 27.1 bits (60), Expect = 4.7
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 133 EEEQEEQEEEEEEEEEEEEEEEEDSRIL 160
E+++E+ EE+ EE + EE +EE +
Sbjct: 281 EKKEEKDEEKSEEVKTEEVDEEFEEEEK 308
Score = 27.1 bits (60), Expect = 6.0
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 130 QEEEEEQEEQEEEEEEEEEEEEEEEEDSRIL 160
+E +E++EE++EE+ EE + EE +EE
Sbjct: 277 KELKEKKEEKDEEKSEEVKTEEVDEEFEEEE 307
>gnl|CDD|235033 PRK02363, PRK02363, DNA-directed RNA polymerase subunit delta;
Reviewed.
Length = 129
Score = 33.8 bits (78), Expect = 0.014
Identities = 12/41 (29%), Positives = 30/41 (73%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEE 151
K K+K + +D+ +++ +++ ++E+ +EE++E+EE+EE
Sbjct: 89 KKKKKFMDGDDDIIDDDILPDDDFDEEDLDEEDDEDEEDEE 129
Score = 32.7 bits (75), Expect = 0.035
Identities = 13/42 (30%), Positives = 28/42 (66%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEE 152
K+K+ D D++ +++ +++ EE +EE++E+EE+EE
Sbjct: 88 DKKKKKFMDGDDDIIDDDILPDDDFDEEDLDEEDDEDEEDEE 129
Score = 30.7 bits (70), Expect = 0.15
Identities = 11/44 (25%), Positives = 29/44 (65%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
K +K+++ D + + ++ ++ ++E+ +EE++E+EE+EE
Sbjct: 86 KFDKKKKKFMDGDDDIIDDDILPDDDFDEEDLDEEDDEDEEDEE 129
Score = 29.2 bits (66), Expect = 0.53
Identities = 11/48 (22%), Positives = 32/48 (66%)
Query: 109 MIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+I +EK ++ + + + +++ +++ + + +EE+ +EE++E+EED
Sbjct: 80 IIPLEEKFDKKKKKFMDGDDDIIDDDILPDDDFDEEDLDEEDDEDEED 127
>gnl|CDD|233870 TIGR02442, Cob-chelat-sub, cobaltochelatase subunit.
Cobaltochelatase is responsible for the insertion of
cobalt into the corrin ring of coenzyme B12 during its
biosynthesis. Two versions have been well described.
CbiK/CbiX is a monomeric, anaerobic version which acts
early in the biosynthesis (pfam06180). CobNST is a
trimeric, ATP-dependent, aerobic version which acts late
in the biosynthesis (TIGR02257/TIGR01650/TIGR01651). A
number of genomes (actinobacteria, cyanobacteria,
betaproteobacteria and pseudomonads) which apparently
biosynthesize B12, encode a cobN gene but are
demonstrably lacking cobS and cobT. These genomes do,
however contain a homolog (modelled here) of the
magnesium chelatase subunits BchI/BchD family. Aside
from the cyanobacteria (which have a separate magnesium
chelatase trimer), these species do not make chlorins,
so do not have any use for a magnesium chelatase.
Furthermore, in nearly all cases the members of this
family are proximal to either CobN itself or other genes
involved in cobalt transport or B12 biosynthesis.
Length = 633
Score = 34.7 bits (80), Expect = 0.015
Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 109 MIKPKEKEEEDEDEEQEE-----EEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
+P+ K+E+D +E+ EE E+ E E++ E+ ++E+E D +
Sbjct: 314 FEQPQGKDEKDLEEKPEEPGPDPEKPDEGEDDAEQSGPRGHPTPGNDDEKEPDPQ 368
Score = 33.5 bits (77), Expect = 0.041
Identities = 10/47 (21%), Positives = 19/47 (40%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
KP E E++ E ++E+E +EE + + + D
Sbjct: 338 KPDEGEDDAEQSGPRGHPTPGNDDEKEPDPQEEADGQGSSTDPAGDI 384
>gnl|CDD|223649 COG0576, GrpE, Molecular chaperone GrpE (heat shock protein)
[Posttranslational modification, protein turnover,
chaperones].
Length = 193
Score = 34.2 bits (79), Expect = 0.015
Identities = 24/47 (51%), Positives = 32/47 (68%)
Query: 109 MIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
M ++K EE + EE EE E+ EEEE +EE+ EEE E EEE++E E
Sbjct: 1 MSDKEQKTEEPDAEETEEAEKSEEEEAEEEEPEEENELEEEQQEIAE 47
Score = 32.7 bits (75), Expect = 0.048
Identities = 21/43 (48%), Positives = 29/43 (67%)
Query: 117 EEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
++++ E+ + EE EE E+ EE+E EEEE EEE E EEE I
Sbjct: 3 DKEQKTEEPDAEETEEAEKSEEEEAEEEEPEEENELEEEQQEI 45
Score = 32.7 bits (75), Expect = 0.050
Identities = 23/44 (52%), Positives = 32/44 (72%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
KE++ E+ D E+ EE E+ EEEE EE+E EEE E EEE++E +
Sbjct: 4 KEQKTEEPDAEETEEAEKSEEEEAEEEEPEEENELEEEQQEIAE 47
Score = 32.3 bits (74), Expect = 0.067
Identities = 21/48 (43%), Positives = 31/48 (64%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRIL 160
E+ E+ E+EE EEEE +EE E +EEQ+E E E + EE +++ R
Sbjct: 16 TEEAEKSEEEEAEEEEPEEENELEEEQQEIAELEAQLEELKDKYLRAQ 63
Score = 31.5 bits (72), Expect = 0.10
Identities = 20/46 (43%), Positives = 31/46 (67%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+E EE ++ EE+E EEE+ EEE + E+E++E E E + EE +D
Sbjct: 12 DAEETEEAEKSEEEEAEEEEPEEENELEEEQQEIAELEAQLEELKD 57
Score = 31.1 bits (71), Expect = 0.17
Identities = 20/46 (43%), Positives = 31/46 (67%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
K +E + E+ +E ++ EEE+ EEEE EE+ E EEE++E E E +
Sbjct: 6 QKTEEPDAEETEEAEKSEEEEAEEEEPEEENELEEEQQEIAELEAQ 51
Score = 30.4 bits (69), Expect = 0.30
Identities = 20/45 (44%), Positives = 31/45 (68%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+P +E E+ ++ +EEE E+EE EE+ E EEE++E E E + EE
Sbjct: 10 EPDAEETEEAEKSEEEEAEEEEPEEENELEEEQQEIAELEAQLEE 54
Score = 30.0 bits (68), Expect = 0.40
Identities = 21/43 (48%), Positives = 28/43 (65%)
Query: 109 MIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEE 151
+ EK EE+E EE+E EEE E EEEQ+E E E + EE ++
Sbjct: 15 ETEEAEKSEEEEAEEEEPEEENELEEEQQEIAELEAQLEELKD 57
Score = 30.0 bits (68), Expect = 0.41
Identities = 22/50 (44%), Positives = 30/50 (60%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRIL 160
E+ EE E E+EE EE+E EEE E +EE++E E E + EE + L
Sbjct: 11 PDAEETEEAEKSEEEEAEEEEPEEENELEEEQQEIAELEAQLEELKDKYL 60
Score = 29.6 bits (67), Expect = 0.45
Identities = 20/38 (52%), Positives = 26/38 (68%)
Query: 119 DEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+ E++ EE + EE EE E+ EEEE EEEE EEE E +
Sbjct: 2 SDKEQKTEEPDAEETEEAEKSEEEEAEEEEPEEENELE 39
Score = 29.2 bits (66), Expect = 0.69
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 109 MIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
+ +E EEE+ +EE E EEEQ+E E E Q EE +++ + E E+ R
Sbjct: 21 KSEEEEAEEEEPEEENELEEEQQEIAELEAQLEELKDKYLRAQAEFENLR 70
Score = 28.4 bits (64), Expect = 1.2
Identities = 20/42 (47%), Positives = 29/42 (69%)
Query: 115 KEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
++E + EE + EE +E E+ +EE+ EEEE EEE E EEE+
Sbjct: 2 SDKEQKTEEPDAEETEEAEKSEEEEAEEEEPEEENELEEEQQ 43
>gnl|CDD|148630 pfam07133, Merozoite_SPAM, Merozoite surface protein (SPAM). This
family consists of several Plasmodium falciparum SPAM
(secreted polymorphic antigen associated with
merozoites) proteins. Variation among SPAM alleles is
the result of deletions and amino acid substitutions in
non-repetitive sequences within and flanking the alanine
heptad-repeat domain. Heptad repeats in which the a and
d position contain hydrophobic residues generate
amphipathic alpha-helices which give rise to helical
bundles or coiled-coil structures in proteins. SPAM is
an example of a P. falciparum antigen in which a
repetitive sequence has features characteristic of a
well-defined structural element.
Length = 164
Score = 34.1 bits (78), Expect = 0.015
Identities = 26/42 (61%), Positives = 37/42 (88%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
EK+E+DE+EE+E+EEE EE E+ E++EE E+EEEEEE+EE+
Sbjct: 46 EKQEDDEEEEEEDEEEIEEPEDIEDEEEIVEDEEEEEEDEED 87
Score = 33.3 bits (76), Expect = 0.028
Identities = 26/45 (57%), Positives = 38/45 (84%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
K++++ED++EE+EE+EE+ EE E E EEE E+EEEEEE+EED+
Sbjct: 44 KDEKQEDDEEEEEEDEEEIEEPEDIEDEEEIVEDEEEEEEDEEDN 88
Score = 32.1 bits (73), Expect = 0.074
Identities = 23/48 (47%), Positives = 36/48 (75%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
+E +EE+E+E++EE EE E+ E++EE E+EEEEEE+EE+ + I
Sbjct: 47 KQEDDEEEEEEDEEEIEEPEDIEDEEEIVEDEEEEEEDEEDNVDLKDI 94
Score = 30.2 bits (68), Expect = 0.31
Identities = 21/45 (46%), Positives = 35/45 (77%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
K ++ EEE+E++E+E EE ++ E+E+E E+EEEEEE+EE+ +
Sbjct: 47 KQEDDEEEEEEDEEEIEEPEDIEDEEEIVEDEEEEEEDEEDNVDL 91
Score = 29.4 bits (66), Expect = 0.49
Identities = 19/48 (39%), Positives = 35/48 (72%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
+ +E+E+E+E EE E+ E++EE E EE+EEE+EE+ + ++ E+ +
Sbjct: 52 EEEEEEDEEEIEEPEDIEDEEEIVEDEEEEEEDEEDNVDLKDIEKKNI 99
Score = 27.5 bits (61), Expect = 2.8
Identities = 21/46 (45%), Positives = 35/46 (76%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
I +KE+ ++ E ++E+QE++EE+EE++EEE EE E+ E+EEE
Sbjct: 28 ITSWDKEDIIKENEDVKDEKQEDDEEEEEEDEEEIEEPEDIEDEEE 73
Score = 26.4 bits (58), Expect = 6.2
Identities = 18/46 (39%), Positives = 32/46 (69%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
E EEE E+ E E+EE+ E+E+EE+E+EE+ + ++ E++ + I
Sbjct: 57 EDEEEIEEPEDIEDEEEIVEDEEEEEEDEEDNVDLKDIEKKNINDI 102
>gnl|CDD|219358 pfam07271, Cytadhesin_P30, Cytadhesin P30/P32. This family
consists of several Mycoplasma species specific
Cytadhesin P32 and P30 proteins. P30 has been found to
be membrane associated and localised on the tip
organelle. It is thought that it is important in
cytadherence and virulence.
Length = 279
Score = 34.3 bits (78), Expect = 0.016
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 109 MIKPKEKEEEDEDEEQEEEEEQEEE-EEQEEQEEEEEEEEEEEEEEEE 155
++K KEK +E E QE+ EQ + EQ EQ+ E + EE +E
Sbjct: 94 IVKRKEKRLLEEKERQEQMAEQLQRISEQNEQQAIEIDPTEEVNTQEP 141
Score = 29.3 bits (65), Expect = 0.84
Identities = 10/40 (25%), Positives = 22/40 (55%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEE 152
+EKE +++ EQ + ++ E++ E + EE +E +
Sbjct: 104 EEKERQEQMAEQLQRISEQNEQQAIEIDPTEEVNTQEPTQ 143
Score = 27.0 bits (59), Expect = 5.0
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
Query: 125 EEEEEQEEEEEQ----EEQEEEEEEEEEEEEEEEEDS 157
EE+E QE+ EQ EQ E++ E + EE
Sbjct: 104 EEKERQEQMAEQLQRISEQNEQQAIEIDPTEEVNTQE 140
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 34.6 bits (79), Expect = 0.016
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 115 KEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+++E +E+ EE QE EE E+ + +EE E+ E E++
Sbjct: 4057 EDDEKMNEDGFEENVQENEESTEDGVKSDEELEQGEVPEDQ 4097
Score = 34.6 bits (79), Expect = 0.018
Identities = 12/43 (27%), Positives = 25/43 (58%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
E ++D+ + E++E+ E+ EE +E EE E+ + +E+
Sbjct: 4045 EDIQQDDFSDLAEDDEKMNEDGFEENVQENEESTEDGVKSDEE 4087
Score = 34.6 bits (79), Expect = 0.019
Identities = 12/40 (30%), Positives = 24/40 (60%)
Query: 119 DEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
DED +Q++ + E++E+ ++ EE +E EE E+ +
Sbjct: 4044 DEDIQQDDFSDLAEDDEKMNEDGFEENVQENEESTEDGVK 4083
Score = 32.7 bits (74), Expect = 0.083
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
++ E+ +ED +E +E EE E + +EE E+ E E++ D
Sbjct: 4057 EDDEKMNEDGFEENVQENEESTEDGVKSDEELEQGEVPEDQAID 4100
Score = 32.3 bits (73), Expect = 0.095
Identities = 12/45 (26%), Positives = 24/45 (53%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
K E++D E+++EEE ++ +E + + +E + E ED
Sbjct: 3942 NKALEDKDRQEKEDEEEMSDDVGIDDEIQPDIQENNSQPPPENED 3986
Score = 32.3 bits (73), Expect = 0.12
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 7/53 (13%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEE-------EEEEEEEEEEEDSRI 159
++++ D +++E+ E+ E+ QE EE +EE E+ E ED I
Sbjct: 4047 IQQDDFSDLAEDDEKMNEDGFEENVQENEESTEDGVKSDEELEQGEVPEDQAI 4099
Score = 31.9 bits (72), Expect = 0.14
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 109 MIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEE 151
+ + EK ED EE +E E+ E+ + EE E+ E E++
Sbjct: 4055 LAEDDEKMNEDGFEENVQENEESTEDGVKSDEELEQGEVPEDQ 4097
Score = 31.5 bits (71), Expect = 0.21
Identities = 11/46 (23%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQ--EEEEEEEEEEEEEEEED 156
E E++ ++ E +E + + E+++ +E+E+EEE +D
Sbjct: 3917 LETEQKSNEQSAANNESDLVSKEDDNKALEDKDRQEKEDEEEMSDD 3962
Score = 31.5 bits (71), Expect = 0.21
Identities = 12/45 (26%), Positives = 25/45 (55%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
P E+ +++ Q+++ E++++ E+ EE +E EE ED
Sbjct: 4036 PLEENNTLDEDIQQDDFSDLAEDDEKMNEDGFEENVQENEESTED 4080
Score = 31.1 bits (70), Expect = 0.24
Identities = 11/41 (26%), Positives = 29/41 (70%)
Query: 117 EEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+ED+++ E+++ QE+E+E+E ++ ++E + + +E +S
Sbjct: 3938 KEDDNKALEDKDRQEKEDEEEMSDDVGIDDEIQPDIQENNS 3978
Score = 30.7 bits (69), Expect = 0.31
Identities = 12/40 (30%), Positives = 24/40 (60%)
Query: 118 EDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
E DE +EE + +++E Q+E EE +E+ ++++ S
Sbjct: 4014 EAADENKEEADAEKDEPMQDEDPLEENNTLDEDIQQDDFS 4053
Score = 30.7 bits (69), Expect = 0.32
Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQ---EEQEEEEEEEEEEEEEEEED 156
+ + DE E +E E + + E E + EEE ++ +EE +
Sbjct: 3848 NQSDLDESEARELESDMNGVTKDSVVSENENSDSEEENQDLDEEVN 3893
Score = 30.7 bits (69), Expect = 0.40
Identities = 9/43 (20%), Positives = 25/43 (58%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
E D ++++ + E+++ QE+++EEE ++ ++E +
Sbjct: 3929 ANNESDLVSKEDDNKALEDKDRQEKEDEEEMSDDVGIDDEIQP 3971
Score = 30.4 bits (68), Expect = 0.44
Identities = 12/40 (30%), Positives = 24/40 (60%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
EK+E +DE+ EE +E+ Q++ + E++E+ E+
Sbjct: 4026 EKDEPMQDEDPLEENNTLDEDIQQDDFSDLAEDDEKMNED 4065
Score = 30.4 bits (68), Expect = 0.51
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 9/54 (16%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEE---------EEEEEEEEEDS 157
KE EEE D+ ++E Q + +E Q E E+ +E+E + +DS
Sbjct: 3953 KEDEEEMSDDVGIDDEIQPDIQENNSQPPPENEDLDLPEDLKLDEKEGDVSKDS 4006
Score = 30.4 bits (68), Expect = 0.54
Identities = 10/41 (24%), Positives = 25/41 (60%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
E DE++E+ + E+ E ++++ EE +E+ ++++ D
Sbjct: 4014 EAADENKEEADAEKDEPMQDEDPLEENNTLDEDIQQDDFSD 4054
Score = 30.0 bits (67), Expect = 0.60
Identities = 10/44 (22%), Positives = 27/44 (61%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
KE+ + ++DE ++E+ EE +E ++++ + E++E+ +
Sbjct: 4020 KEEADAEKDEPMQDEDPLEENNTLDEDIQQDDFSDLAEDDEKMN 4063
Score = 30.0 bits (67), Expect = 0.63
Identities = 10/46 (21%), Positives = 26/46 (56%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+P + E+ E+ +E+ Q+++ +++E+ E+ EE +E+
Sbjct: 4029 EPMQDEDPLEENNTLDEDIQQDDFSDLAEDDEKMNEDGFEENVQEN 4074
Score = 29.6 bits (66), Expect = 0.77
Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 12/55 (21%)
Query: 117 EEDEDEEQEEEEEQEEEEEQEEQE------------EEEEEEEEEEEEEEEDSRI 159
EE +EE + +E E E E E E + EEE ++ D +
Sbjct: 3838 EELANEEDTANQSDLDESEARELESDMNGVTKDSVVSENENSDSEEENQDLDEEV 3892
Score = 29.2 bits (65), Expect = 0.99
Identities = 10/41 (24%), Positives = 25/41 (60%)
Query: 115 KEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
KE++++ E ++ +E+E+EEE + ++E + + +E
Sbjct: 3938 KEDDNKALEDKDRQEKEDEEEMSDDVGIDDEIQPDIQENNS 3978
Score = 29.2 bits (65), Expect = 1.1
Identities = 10/46 (21%), Positives = 26/46 (56%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
K E+ + + + +E+ + E ++++E+E+EEE ++ +D
Sbjct: 3922 KSNEQSAANNESDLVSKEDDNKALEDKDRQEKEDEEEMSDDVGIDD 3967
Score = 28.8 bits (64), Expect = 1.6
Identities = 9/44 (20%), Positives = 27/44 (61%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
++ +E + +E++ + E+++ QE+E+EEE ++ +++
Sbjct: 3925 EQSAANNESDLVSKEDDNKALEDKDRQEKEDEEEMSDDVGIDDE 3968
Score = 28.8 bits (64), Expect = 1.6
Identities = 9/42 (21%), Positives = 23/42 (54%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
KE + + +++ +E+E EEE + ++E + + +E +
Sbjct: 3938 KEDDNKALEDKDRQEKEDEEEMSDDVGIDDEIQPDIQENNSQ 3979
Score = 28.8 bits (64), Expect = 1.8
Identities = 12/44 (27%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 115 KEEEDEDEEQE-EEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
E E + EQ E + ++++ + E+++ +E+E+EEE S
Sbjct: 3917 LETEQKSNEQSAANNESDLVSKEDDNKALEDKDRQEKEDEEEMS 3960
Score = 28.4 bits (63), Expect = 2.0
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 116 EEEDEDEEQ---EEEEEQEEEEEQEEQEEEEEEE--EEEEEEEEEDSR 158
++ED EE +E+ +Q++ + E +E+ E+ EE +E EE +
Sbjct: 4032 QDEDPLEENNTLDEDIQQDDFSDLAEDDEKMNEDGFEENVQENEESTE 4079
Score = 28.4 bits (63), Expect = 2.1
Identities = 8/46 (17%), Positives = 23/46 (50%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+E +E+E+ ++ + EE E+ E E++ + + + + +
Sbjct: 4067 FEENVQENEESTEDGVKSDEELEQGEVPEDQAIDNHPKMDAKSTFA 4112
Score = 27.3 bits (60), Expect = 4.5
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 115 KEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
E E+ D E+E ++ EE + E E+ +E EED
Sbjct: 3874 SENENSDSEEENQDLDEEVNDIPEDLSNSLNEKLWDEPNEEDLL 3917
Score = 26.9 bits (59), Expect = 5.9
Identities = 9/41 (21%), Positives = 25/41 (60%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
E ++E + +++E Q+E+ +E +E+ ++++ + ED
Sbjct: 4018 ENKEEADAEKDEPMQDEDPLEENNTLDEDIQQDDFSDLAED 4058
Score = 26.5 bits (58), Expect = 8.8
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 118 EDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
ED E+++ EE +E+ + + +E E E E D
Sbjct: 3825 EDITNTLNEDDDLEELANEEDTANQSDLDESEARELESD 3863
Score = 26.5 bits (58), Expect = 9.6
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 112 PKEKEEEDEDEE---QEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
P E E+ D E+ E+E + ++ + E+ + E +E +EE + E+D
Sbjct: 3981 PPENEDLDLPEDLKLDEKEGDVSKDSDLEDMDMEAADENKEEADAEKD 4028
>gnl|CDD|100110 cd05832, Ribosomal_L12p, Ribosomal protein L12p. This subfamily
includes archaeal L12p, the protein that is functionally
equivalent to L7/L12 in bacteria and the P1 and P2
proteins in eukaryotes. L12p is homologous to P1 and P2
but is not homologous to bacterial L7/L12. It is located
in the L12 stalk, with proteins L10, L11, and 23S rRNA.
L12p is the only protein in the ribosome to occur as
multimers, always appearing as sets of dimers. Recent
data indicate that most archaeal species contain six
copies of L12p (three homodimers), while eukaryotes have
four copies (two heterodimers), and bacteria may have
four or six copies (two or three homodimers), depending
on the species. The organization of proteins within the
stalk has been characterized primarily in bacteria,
where L7/L12 forms either two or three homodimers and
each homodimer binds to the extended C-terminal helix of
L10. L7/L12 is attached to the ribosome through L10 and
is the only ribosomal protein that does not directly
interact with rRNA. Archaeal L12p is believed to
function in a similar fashion. However, hybrid ribosomes
containing the large subunit from E. coli with an
archaeal stalk are able to bind archaeal and eukaryotic
elongation factors but not bacterial elongation factors.
In several mesophilic and thermophilic archaeal species,
the binding of 23S rRNA to protein L11 and to the
L10/L12p pentameric complex was found to be
temperature-dependent and cooperative.
Length = 106
Score = 32.9 bits (75), Expect = 0.018
Identities = 16/28 (57%), Positives = 22/28 (78%)
Query: 129 EQEEEEEQEEQEEEEEEEEEEEEEEEED 156
EE+ EE+EEE+++EEE+EEEEEE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEEA 98
Score = 32.1 bits (73), Expect = 0.033
Identities = 14/27 (51%), Positives = 23/27 (85%)
Query: 131 EEEEEQEEQEEEEEEEEEEEEEEEEDS 157
EE+ E++EEE+++EEE+EEEEE++
Sbjct: 72 AAAEEKAEEKEEEKKKEEEKEEEEEEA 98
Score = 31.7 bits (72), Expect = 0.053
Identities = 14/27 (51%), Positives = 22/27 (81%)
Query: 127 EEEQEEEEEQEEQEEEEEEEEEEEEEE 153
EE+ E++E+E+++EEE+EEEEEE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 31.7 bits (72), Expect = 0.056
Identities = 15/26 (57%), Positives = 22/26 (84%)
Query: 125 EEEEEQEEEEEQEEQEEEEEEEEEEE 150
EE+ EE+E+E+++EEE+EEEEEE
Sbjct: 72 AAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 30.9 bits (70), Expect = 0.091
Identities = 15/27 (55%), Positives = 22/27 (81%)
Query: 123 EQEEEEEQEEEEEQEEQEEEEEEEEEE 149
EE+ EE+EE++++EEE+EEEEEE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 30.5 bits (69), Expect = 0.12
Identities = 14/26 (53%), Positives = 22/26 (84%)
Query: 122 EEQEEEEEQEEEEEQEEQEEEEEEEE 147
EE+ E++EEE+++E+E+EEEEEE
Sbjct: 72 AAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 30.5 bits (69), Expect = 0.14
Identities = 14/27 (51%), Positives = 22/27 (81%)
Query: 125 EEEEEQEEEEEQEEQEEEEEEEEEEEE 151
E++ EE++EE+++EEE+EEEEEE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 29.8 bits (67), Expect = 0.24
Identities = 14/27 (51%), Positives = 22/27 (81%)
Query: 126 EEEEQEEEEEQEEQEEEEEEEEEEEEE 152
+E+ EE+EE++++EEE+EEEEEE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 29.4 bits (66), Expect = 0.41
Identities = 12/25 (48%), Positives = 22/25 (88%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQ 136
E++ E+++EE+++EEE+EEEEE+
Sbjct: 73 AAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 28.2 bits (63), Expect = 0.82
Identities = 12/27 (44%), Positives = 22/27 (81%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEE 138
EE+ E++E+E+++E+E+EEE+EE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 28.2 bits (63), Expect = 0.93
Identities = 11/28 (39%), Positives = 21/28 (75%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQ 139
EE +E++EE++++EE+EE+EE+
Sbjct: 70 AAAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 28.2 bits (63), Expect = 1.0
Identities = 13/25 (52%), Positives = 22/25 (88%)
Query: 120 EDEEQEEEEEQEEEEEQEEQEEEEE 144
EE+ EE+E+E+++E+E++EEEEE
Sbjct: 73 AAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 27.8 bits (62), Expect = 1.1
Identities = 12/26 (46%), Positives = 21/26 (80%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEE 141
+E E++EEE+++EEE++EE+EE
Sbjct: 72 AAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 27.8 bits (62), Expect = 1.2
Identities = 13/27 (48%), Positives = 22/27 (81%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEE 142
E++ +E+EEE+++EEE+EE+EEE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 27.8 bits (62), Expect = 1.3
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 132 EEEEQEEQEEEEEEEEEEEEEEEEDSRIL 160
+E+ EE+EEE+++EEE+EEE+ L
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEEAL 99
Score = 26.7 bits (59), Expect = 3.5
Identities = 11/24 (45%), Positives = 21/24 (87%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEE 134
++ EE++E++++EEE+E+EEEE
Sbjct: 74 AEEKAEEKEEEKKKEEEKEEEEEE 97
>gnl|CDD|218258 pfam04774, HABP4_PAI-RBP1, Hyaluronan / mRNA binding family. This
family includes the HABP4 family of hyaluronan-binding
proteins, and the PAI-1 mRNA-binding protein, PAI-RBP1.
HABP4 has been observed to bind hyaluronan (a
glucosaminoglycan), but it is not known whether this is
its primary role in vivo. It has also been observed to
bind RNA, but with a lower affinity than that for
hyaluronan. PAI-1 mRNA-binding protein specifically
binds the mRNA of type-1 plasminogen activator inhibitor
(PAI-1), and is thought to be involved in regulation of
mRNA stability. However, in both cases, the sequence
motifs predicted to be important for ligand binding are
not conserved throughout the family, so it is not known
whether members of this family share a common function.
Length = 106
Score = 32.8 bits (75), Expect = 0.019
Identities = 20/42 (47%), Positives = 29/42 (69%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
EE+ E+EE+ E EE++ EE+ +E EEEE EEEE++E
Sbjct: 37 LTEEQGEEEEKNEVEEKQAVEEEANKEGVVEEEEVEEEEDKE 78
Score = 31.2 bits (71), Expect = 0.079
Identities = 20/41 (48%), Positives = 27/41 (65%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
E +E E+EE+ E EE++ EE+ +E EEEE EEEED
Sbjct: 36 ELTEEQGEEEEKNEVEEKQAVEEEANKEGVVEEEEVEEEED 76
Score = 28.5 bits (64), Expect = 0.65
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 120 EDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+DE E EEQ EEEE+ E EE++ EEE +E +
Sbjct: 31 KDEIAELTEEQGEEEEKNEVEEKQAVEEEANKEGVVEE 68
Score = 25.8 bits (57), Expect = 5.6
Identities = 17/46 (36%), Positives = 28/46 (60%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
K + EE + E+E +E EEE+ E+EE++E EE E+ ++ R
Sbjct: 47 KNEVEEKQAVEEEANKEGVVEEEEVEEEEDKEMTLEEYEKALQEKR 92
>gnl|CDD|234767 PRK00448, polC, DNA polymerase III PolC; Validated.
Length = 1437
Score = 34.4 bits (80), Expect = 0.019
Identities = 13/69 (18%), Positives = 37/69 (53%)
Query: 93 QANWSRGNPMVSCVFWMIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEE 152
+ G ++ F + KE+ E+ E +++EE+E+ +E + ++ E E++++ +
Sbjct: 149 KQYEKFGFGILKIDFEIDDSKEELEKFEAQKEEEDEKLAKEALEAMKKLEAEKKKQSKNF 208
Query: 153 EEEDSRILI 161
+ ++ + I
Sbjct: 209 DPKEGPVQI 217
>gnl|CDD|233467 TIGR01554, major_cap_HK97, phage major capsid protein, HK97 family.
This model family represents the major capsid protein
component of the heads (capsids) of bacteriophage HK97,
phi-105, P27, and related phage. This model represents
one of several analogous families lacking detectable
sequence similarity. The gene encoding this component is
typically located in an operon encoding the small and
large terminase subunits, the portal protein and the
prohead or maturation protease [Mobile and
extrachromosomal element functions, Prophage functions].
Length = 384
Score = 34.3 bits (79), Expect = 0.020
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
K EDE + EEE+ E + +EE ++ + E + EE +E
Sbjct: 16 RKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDELEA 60
Score = 31.6 bits (72), Expect = 0.13
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 109 MIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
+ K E E+ E EE++ E + +EE + E + EE +E E + +
Sbjct: 15 LRKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDELEAKPAA 64
Score = 31.6 bits (72), Expect = 0.17
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
KE + EDE+ E EE++ E + ++E ++ + E + EE D
Sbjct: 11 LAKELRKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDE 57
Score = 30.4 bits (69), Expect = 0.38
Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEE----EEEQEEQEEEEEEEEEEEEEEEEDSR 158
+ EK E E+E+ E + +EE + E + EE +E E + E
Sbjct: 18 LTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDELEAKPAASGEGGG 70
Score = 29.6 bits (67), Expect = 0.65
Identities = 14/46 (30%), Positives = 21/46 (45%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
++E + D E + EE +E E + E EEEEEE +
Sbjct: 37 LKEEIDKLDAEIDRLEELLDELEAKPAASGEGGGGEEEEEEAKAEA 82
Score = 29.6 bits (67), Expect = 0.66
Identities = 12/51 (23%), Positives = 28/51 (54%)
Query: 109 MIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
+ + +E E E ++ E+++ E +EE+ E + +EE ++ + E R+
Sbjct: 1 LKELREALAELAKELRKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRL 51
Score = 28.9 bits (65), Expect = 1.3
Identities = 10/47 (21%), Positives = 23/47 (48%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
E +E ++E+ + EEE+ E +EE ++ + E + + +
Sbjct: 9 AELAKELRKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELL 55
>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3
subunit. This is a family of proteins which are
subunits of the eukaryotic translation initiation factor
3 (eIF3). In yeast it is called Hcr1. The Saccharomyces
cerevisiae protein eIF3j (HCR1) has been shown to be
required for processing of 20S pre-rRNA and binds to 18S
rRNA and eIF3 subunits Rpg1p and Prt1p.
Length = 242
Score = 33.9 bits (78), Expect = 0.021
Identities = 12/47 (25%), Positives = 28/47 (59%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
K + + E++++ + E+EE+ E +E+ E+E E+ + +E+S
Sbjct: 60 KALKAKIEEKEKAKREKEEKGLRELEEDTPEDELAEKLRLRKLQEES 106
Score = 31.6 bits (72), Expect = 0.14
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
+K K +E+E E+EE+ +E EE+ E E E+ + +EE
Sbjct: 62 LKAKIEEKEKAKREKEEKGLRELEEDTPEDELAEKLRLRKLQEE 105
Score = 31.2 bits (71), Expect = 0.19
Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 9/53 (16%)
Query: 113 KEKEEEDEDEEQEEEEEQEE---------EEEQEEQEEEEEEEEEEEEEEEED 156
K+ +E+EDEE+EEE+ + + + EE+E+ + E+EE+ E E+
Sbjct: 34 KDSWDEEEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLRELEE 86
Score = 31.2 bits (71), Expect = 0.20
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
K K ++ + EE+E+ + E+E++ E EE+ E+E E+
Sbjct: 54 AKAKAKKALKAKIEEKEKAKREKEEKGLRELEEDTPEDELAEKL 97
Score = 29.6 bits (67), Expect = 0.55
Identities = 11/48 (22%), Positives = 26/48 (54%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
K K + + + + E++E+ ++E++E+ E EE+ E+E +
Sbjct: 49 KAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLRELEEDTPEDELAEK 96
>gnl|CDD|224217 COG1298, FlhA, Flagellar biosynthesis pathway, component FlhA [Cell
motility and secretion / Intracellular trafficking and
secretion].
Length = 696
Score = 34.2 bits (79), Expect = 0.023
Identities = 15/32 (46%), Positives = 23/32 (71%)
Query: 127 EEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
+EQ+ EE+++ EE ++EEEEEEEE +D
Sbjct: 326 RKEQQAEEKEKPAEEAKKEEEEEEEESVDDVL 357
Score = 31.5 bits (72), Expect = 0.17
Identities = 13/35 (37%), Positives = 24/35 (68%)
Query: 121 DEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+EQ+ EE+++ EE +++EEEEEEE ++ +
Sbjct: 326 RKEQQAEEKEKPAEEAKKEEEEEEEESVDDVLLID 360
Score = 30.3 bits (69), Expect = 0.38
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 122 EEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
E+Q EE+E+ EE ++E+EEEEEE ++ +
Sbjct: 328 EQQAEEKEKPAEEAKKEEEEEEEESVDDVLLIDP 361
Score = 29.5 bits (67), Expect = 0.69
Identities = 14/33 (42%), Positives = 24/33 (72%)
Query: 123 EQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+ +E+Q EE+E+ +E ++EEEEEEEE ++
Sbjct: 323 LSKRKEQQAEEKEKPAEEAKKEEEEEEEESVDD 355
Score = 29.5 bits (67), Expect = 0.81
Identities = 14/28 (50%), Positives = 23/28 (82%)
Query: 130 QEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+ +E++ EE+E+ EE ++EEEEEEE+S
Sbjct: 325 KRKEQQAEEKEKPAEEAKKEEEEEEEES 352
Score = 29.5 bits (67), Expect = 0.88
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 108 WMIKPKEKEEEDEDEEQEEEE-EQEEEEEQEEQEEEEEEEEEEE 150
+ K KE++ E++++ EE + E+EEEEE+ + + E E
Sbjct: 322 LLSKRKEQQAEEKEKPAEEAKKEEEEEEEESVDDVLLIDPIELE 365
Score = 29.1 bits (66), Expect = 0.92
Identities = 12/36 (33%), Positives = 24/36 (66%)
Query: 119 DEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
++++ EE+E+ EE ++EE+EEEEE ++ +
Sbjct: 326 RKEQQAEEKEKPAEEAKKEEEEEEEESVDDVLLIDP 361
Score = 29.1 bits (66), Expect = 1.2
Identities = 13/35 (37%), Positives = 24/35 (68%)
Query: 122 EEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
++++ EE+E+ E+ ++EEEEEEEE ++ D
Sbjct: 326 RKEQQAEEKEKPAEEAKKEEEEEEEESVDDVLLID 360
Score = 27.2 bits (61), Expect = 4.2
Identities = 9/47 (19%), Positives = 26/47 (55%)
Query: 106 VFWMIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEE 152
+ + + +++ E++E+ +E ++E+EE+EEE ++ +
Sbjct: 315 LLAFLAYLLSKRKEQQAEEKEKPAEEAKKEEEEEEEESVDDVLLIDP 361
>gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain. This is a family of proteins of
approximately 300 residues, found in plants and
vertebrates. They contain a highly conserved DDRGK
motif.
Length = 189
Score = 33.5 bits (77), Expect = 0.023
Identities = 20/44 (45%), Positives = 34/44 (77%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
++K EE + E++EEEE EEE E++++EEE +E EE+ +E+E+
Sbjct: 31 RKKLEEKREGERKEEEELEEEREKKKEEEERKEREEQARKEQEE 74
Score = 31.6 bits (72), Expect = 0.12
Identities = 18/42 (42%), Positives = 30/42 (71%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
K + E E+EE EEE E+++EEE+ ++ EE+ +E+EE E+
Sbjct: 37 KREGERKEEEELEEEREKKKEEEERKEREEQARKEQEEYEKL 78
Score = 31.2 bits (71), Expect = 0.17
Identities = 21/47 (44%), Positives = 35/47 (74%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
+ ++ E E+EE+EE ++ EE+ E E +EEEE EEE E+++EEE+ +
Sbjct: 17 RRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKE 63
Score = 30.8 bits (70), Expect = 0.18
Identities = 19/44 (43%), Positives = 33/44 (75%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+E+++ +E E E +EE+E EEE+E+++EEEE +E EE+ +E
Sbjct: 29 EERKKLEEKREGERKEEEELEEEREKKKEEEERKEREEQARKEQ 72
Score = 30.8 bits (70), Expect = 0.21
Identities = 21/45 (46%), Positives = 35/45 (77%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
K +EK E + EE+E EEE+E+++E+EE++E EE+ +E+EE E+
Sbjct: 33 KLEEKREGERKEEEELEEEREKKKEEEERKEREEQARKEQEEYEK 77
Score = 30.4 bits (69), Expect = 0.25
Identities = 20/42 (47%), Positives = 32/42 (76%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
E+ EE + E++ E E++EEEE EE+ E+++EEEE +E EE+
Sbjct: 26 EEREERKKLEEKREGERKEEEELEEEREKKKEEEERKEREEQ 67
Score = 30.4 bits (69), Expect = 0.31
Identities = 20/46 (43%), Positives = 33/46 (71%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
E+EE +E ++ EE+ E E +EE+E +EE E+++EEEE +E E+
Sbjct: 24 EEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKEREEQAR 69
Score = 30.1 bits (68), Expect = 0.32
Identities = 19/45 (42%), Positives = 33/45 (73%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
K E++ E E +E+EE EE+ E++++EE+ +E EE+ +E+EE E
Sbjct: 32 KKLEEKREGERKEEEELEEEREKKKEEEERKEREEQARKEQEEYE 76
Score = 28.9 bits (65), Expect = 0.84
Identities = 18/46 (39%), Positives = 30/46 (65%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+ +E EEE E +++EEE ++ EE+ ++EQEE E+ + EEE
Sbjct: 44 EEEELEEEREKKKEEEERKEREEQARKEQEEYEKLKSSFVVEEEGT 89
Score = 28.5 bits (64), Expect = 1.4
Identities = 16/44 (36%), Positives = 32/44 (72%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
E+ ++ E++ + E +E+EE EE+ E+++EEEE +E EE+ ++
Sbjct: 29 EERKKLEEKREGERKEEEELEEEREKKKEEEERKEREEQARKEQ 72
Score = 28.1 bits (63), Expect = 1.8
Identities = 21/45 (46%), Positives = 30/45 (66%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
K + K EE + Q+ E E+EE EE+++ EE+ E E +EEEE EE
Sbjct: 6 KKRAKLEEKQARRQQREAEEEEREERKKLEEKREGERKEEEELEE 50
Score = 27.7 bits (62), Expect = 2.4
Identities = 19/49 (38%), Positives = 35/49 (71%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
K +++ + +EE+ EE ++ EE+ + E++EEEE EEE E+++EE+ R
Sbjct: 13 EKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEER 61
Score = 27.7 bits (62), Expect = 2.6
Identities = 15/44 (34%), Positives = 32/44 (72%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
+ E++EE+E EE+ E++++EEE ++ E++ +E+EE E+ +
Sbjct: 38 REGERKEEEELEEEREKKKEEEERKEREEQARKEQEEYEKLKSS 81
Score = 26.6 bits (59), Expect = 4.7
Identities = 14/47 (29%), Positives = 30/47 (63%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+ +EK++E+E+ ++ EE+ ++E+EE E+ + EEE ++ D
Sbjct: 49 EEEREKKKEEEERKEREEQARKEQEEYEKLKSSFVVEEEGTDKLSAD 95
Score = 26.6 bits (59), Expect = 4.9
Identities = 18/48 (37%), Positives = 32/48 (66%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRILI 161
+ ++ E EE+E EE ++ EE++E + +EEEE EEE E+++E+
Sbjct: 16 ARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKE 63
Score = 26.6 bits (59), Expect = 5.6
Identities = 16/45 (35%), Positives = 32/45 (71%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
K + + +E+E+ E+E E+++EEEE +E +E+ +E+EE E+ +
Sbjct: 37 KREGERKEEEELEEEREKKKEEEERKEREEQARKEQEEYEKLKSS 81
>gnl|CDD|184724 PRK14520, rpsP, 30S ribosomal protein S16; Provisional.
Length = 155
Score = 33.1 bits (76), Expect = 0.026
Identities = 9/34 (26%), Positives = 11/34 (32%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEE 143
PK+K+ E E E EEE
Sbjct: 122 TTPKKKKAAAEAAAAEAAAPAAEAAAAAAAEEEA 155
Score = 32.0 bits (73), Expect = 0.066
Identities = 6/42 (14%), Positives = 11/42 (26%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
E ++++ + E E EEE
Sbjct: 114 DGGPTAEATTPKKKKAAAEAAAAEAAAPAAEAAAAAAAEEEA 155
Score = 30.0 bits (68), Expect = 0.29
Identities = 5/41 (12%), Positives = 11/41 (26%)
Query: 117 EEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+ E ++++ E E E E+
Sbjct: 114 DGGPTAEATTPKKKKAAAEAAAAEAAAPAAEAAAAAAAEEE 154
Score = 30.0 bits (68), Expect = 0.31
Identities = 6/41 (14%), Positives = 11/41 (26%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+ ++++ E E E EEE
Sbjct: 115 GGPTAEATTPKKKKAAAEAAAAEAAAPAAEAAAAAAAEEEA 155
Score = 30.0 bits (68), Expect = 0.32
Identities = 7/41 (17%), Positives = 10/41 (24%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEE 151
E +++ E E E EEE
Sbjct: 115 GGPTAEATTPKKKKAAAEAAAAEAAAPAAEAAAAAAAEEEA 155
Score = 30.0 bits (68), Expect = 0.35
Identities = 7/45 (15%), Positives = 12/45 (26%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+ E ++++ E E E EEE
Sbjct: 111 AEADGGPTAEATTPKKKKAAAEAAAAEAAAPAAEAAAAAAAEEEA 155
Score = 28.9 bits (65), Expect = 0.82
Identities = 5/46 (10%), Positives = 11/46 (23%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
E + E ++++ E E E +
Sbjct: 106 FNAALAEADGGPTAEATTPKKKKAAAEAAAAEAAAPAAEAAAAAAA 151
Score = 28.5 bits (64), Expect = 1.0
Identities = 6/45 (13%), Positives = 14/45 (31%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
E + E ++++ E + E EE++
Sbjct: 111 AEADGGPTAEATTPKKKKAAAEAAAAEAAAPAAEAAAAAAAEEEA 155
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein. TolA couples the inner
membrane complex of itself with TolQ and TolR to the
outer membrane complex of TolB and OprL (also called
Pal). Most of the length of the protein consists of
low-complexity sequence that may differ in both length
and composition from one species to another,
complicating efforts to discriminate TolA (the most
divergent gene in the tol-pal system) from paralogs such
as TonB. Selection of members of the seed alignment and
criteria for setting scoring cutoffs are based largely
conserved operon struction. //The Tol-Pal complex is
required for maintaining outer membrane integrity. Also
involved in transport (uptake) of colicins and
filamentous DNA, and implicated in pathogenesis.
Transport is energized by the proton motive force. TolA
is an inner membrane protein that interacts with
periplasmic TolB and with outer membrane porins ompC,
phoE and lamB [Transport and binding proteins, Other,
Cellular processes, Pathogenesis].
Length = 346
Score = 33.7 bits (77), Expect = 0.026
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
KE+E + + E+Q EE E++ EQ Q+E E+ E+ ++ +
Sbjct: 62 AAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAE 108
Score = 32.1 bits (73), Expect = 0.098
Identities = 10/44 (22%), Positives = 24/44 (54%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
+KE+E + + +++ EE E++ E+ ++E E+ E+
Sbjct: 61 PAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAA 104
Score = 31.7 bits (72), Expect = 0.14
Identities = 10/49 (20%), Positives = 29/49 (59%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
K E++ E+ ++++ E+ +++E EQ E+ ++ E+ ++ E+ +
Sbjct: 70 QKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQ 118
Score = 31.3 bits (71), Expect = 0.19
Identities = 8/43 (18%), Positives = 25/43 (58%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
K++ E +++ E+ E+ ++ ++ ++ EE++++ EE
Sbjct: 82 KQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEA 124
Score = 31.3 bits (71), Expect = 0.20
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEE 152
K ++ ++ +Q EE++++ EE + +Q E + + E E E
Sbjct: 100 AEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAE 141
Score = 31.0 bits (70), Expect = 0.22
Identities = 10/41 (24%), Positives = 22/41 (53%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEE 150
K E+ E ++ E+ ++ EE+++Q EE + ++ E
Sbjct: 91 QKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAE 131
Score = 30.2 bits (68), Expect = 0.45
Identities = 12/46 (26%), Positives = 26/46 (56%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
KP K+E++ ++ E++ E+ E++ EQ ++E E+ E+
Sbjct: 59 KKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAA 104
Score = 29.8 bits (67), Expect = 0.54
Identities = 10/47 (21%), Positives = 30/47 (63%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
I+ ++K +++E++++ EQ+ EE ++++ E+ ++E E+ +
Sbjct: 55 IQQQKKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAE 101
Score = 29.8 bits (67), Expect = 0.55
Identities = 11/44 (25%), Positives = 24/44 (54%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
+ + E+ +E E+ E+ +Q EQ ++ EE++++ EE
Sbjct: 81 EKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEA 124
Score = 29.8 bits (67), Expect = 0.60
Identities = 8/45 (17%), Positives = 27/45 (60%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+ +++ ++ ++E E+ E+ ++ E+ ++ EE++++ EE
Sbjct: 79 EAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEE 123
Score = 29.4 bits (66), Expect = 0.88
Identities = 12/49 (24%), Positives = 27/49 (55%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
K +++ EE E + E+ Q+E E++ E+ ++ E+ ++ EE +
Sbjct: 71 KKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQK 119
Score = 29.4 bits (66), Expect = 0.89
Identities = 9/48 (18%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 111 KPKEKEEEDEDEE--QEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+ E+ + E E+ E+ ++ E+ ++ EE++++ EE + ++ +
Sbjct: 84 RAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAE 131
Score = 28.6 bits (64), Expect = 1.5
Identities = 9/43 (20%), Positives = 25/43 (58%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
+ ++K+ E + EE E++ E+ ++E ++ E+ ++ E+
Sbjct: 67 QERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQ 109
Score = 28.3 bits (63), Expect = 1.8
Identities = 13/43 (30%), Positives = 27/43 (62%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
K+K+ E+ +Q E + + E E E++ +EE +++ EEE + +
Sbjct: 117 KQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAK 159
Score = 28.3 bits (63), Expect = 1.9
Identities = 12/45 (26%), Positives = 26/45 (57%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+ EK+ E Q+E E++ E+ +Q E+ ++ EE++++ E
Sbjct: 78 EEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAE 122
Score = 27.9 bits (62), Expect = 2.2
Identities = 10/39 (25%), Positives = 24/39 (61%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEE 151
+ ++ +E ++Q EE + ++ E + + E E E++ +EE
Sbjct: 109 QAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEE 147
Score = 27.9 bits (62), Expect = 2.4
Identities = 9/43 (20%), Positives = 26/43 (60%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+++ ++ +Q E+ ++ EE+Q++ EE + ++ E + + E
Sbjct: 95 EQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAE 137
Score = 27.5 bits (61), Expect = 3.8
Identities = 10/44 (22%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 111 KPKEKEEEDEDEEQEEEEEQE-EEEEQEEQEEEEEEEEEEEEEE 153
EK + ++ ++ EE++ + EE + ++ E + + E E E
Sbjct: 98 AAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAE 141
Score = 27.5 bits (61), Expect = 3.8
Identities = 9/44 (20%), Positives = 28/44 (63%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
+ +++++ +EQE +++ E++ E+ E++ E+ ++E E+
Sbjct: 54 RIQQQKKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQR 97
Score = 27.1 bits (60), Expect = 4.7
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEE 151
+ K K+ + + E E E++ +EE ++Q EEE + + E
Sbjct: 123 EAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAE 163
Score = 27.1 bits (60), Expect = 5.1
Identities = 9/45 (20%), Positives = 28/45 (62%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+ ++++ ++E+E +++ E++ EE E++ E+ ++E E+
Sbjct: 53 NRIQQQKKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQR 97
Score = 27.1 bits (60), Expect = 5.2
Identities = 11/57 (19%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 99 GNPMVSCVFWMIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
G ++ V ++ P ++ +Q+++ ++E+E++++ E++ EE E++ E+
Sbjct: 34 GGEIIQAV--LVDPGAVAQQANRIQQQKKPAAKKEQERQKKLEQQAEEAEKQRAAEQ 88
Score = 26.7 bits (59), Expect = 6.5
Identities = 11/44 (25%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 113 KEKEEEDEDEEQEE-EEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
K+ EEE + + E +++ E +++ E E + + E + + + EE
Sbjct: 150 KQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAKAEE 193
Score = 26.3 bits (58), Expect = 7.4
Identities = 8/39 (20%), Positives = 22/39 (56%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEE 152
+K+ E+E + + E +++ E +++ E E + + E +
Sbjct: 149 KKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKA 187
>gnl|CDD|114603 pfam05887, Trypan_PARP, Procyclic acidic repetitive protein (PARP).
This family consists of several Trypanosoma brucei
procyclic acidic repetitive protein (PARP) like
sequences. The procyclic acidic repetitive protein
(parp) genes of Trypanosoma brucei encode a small family
of abundant surface proteins whose expression is
restricted to the procyclic form of the parasite. They
are found at two unlinked loci, parpA and parpB;
transcription of both loci is developmentally regulated.
Length = 145
Score = 33.0 bits (74), Expect = 0.027
Identities = 24/44 (54%), Positives = 30/44 (68%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
P+E+EE + +EE EEE E EEE E+E + EE EEE E E E E
Sbjct: 64 PEEEEEPEPEEEGEEEPEPEEEGEEEPEPEETGEEEPEPEPEPE 107
Score = 32.6 bits (73), Expect = 0.039
Identities = 23/41 (56%), Positives = 29/41 (70%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+ +DE EE+EE E +EE EE+ E EEE EEE E EE EE+
Sbjct: 59 DPDDEPEEEEEPEPEEEGEEEPEPEEEGEEEPEPEETGEEE 99
Score = 32.2 bits (72), Expect = 0.059
Identities = 24/43 (55%), Positives = 29/43 (67%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
E+EEE E EE+ EEE + EEE +EE E EE EEE E E E +
Sbjct: 65 EEEEEPEPEEEGEEEPEPEEEGEEEPEPEETGEEEPEPEPEPE 107
Score = 32.2 bits (72), Expect = 0.061
Identities = 23/44 (52%), Positives = 27/44 (61%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+ + EE+ +EE E EEE EEE E EE EEE E E E E E E
Sbjct: 68 EEPEPEEEGEEEPEPEEEGEEEPEPEETGEEEPEPEPEPEPEPE 111
Score = 31.9 bits (71), Expect = 0.080
Identities = 23/44 (52%), Positives = 29/44 (65%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+ +EEE+ + E+E EEE E EEE EE+ E EE EEE E E E
Sbjct: 62 DEPEEEEEPEPEEEGEEEPEPEEEGEEEPEPEETGEEEPEPEPE 105
Score = 31.1 bits (69), Expect = 0.13
Identities = 21/43 (48%), Positives = 30/43 (69%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+ ++E E+EE+ E EE+ EEE + E+E EEE E EE EEE +
Sbjct: 59 DPDDEPEEEEEPEPEEEGEEEPEPEEEGEEEPEPEETGEEEPE 101
Score = 31.1 bits (69), Expect = 0.16
Identities = 23/44 (52%), Positives = 30/44 (68%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
P ++ EE+E+ E EEE E+E E E+E +EE E EE EEE E E
Sbjct: 60 PDDEPEEEEEPEPEEEGEEEPEPEEEGEEEPEPEETGEEEPEPE 103
Score = 30.7 bits (68), Expect = 0.19
Identities = 21/45 (46%), Positives = 28/45 (62%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+E E E+E EE+ E EE+ EEE + E+ EEE E E E E E +
Sbjct: 67 EEEPEPEEEGEEEPEPEEEGEEEPEPEETGEEEPEPEPEPEPEPE 111
Score = 30.7 bits (68), Expect = 0.20
Identities = 22/44 (50%), Positives = 28/44 (63%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
P+E+ EE+ + E+E EEE E EE EE+ E E E E E E E E
Sbjct: 72 PEEEGEEEPEPEEEGEEEPEPEETGEEEPEPEPEPEPEPEPEPE 115
Score = 30.7 bits (68), Expect = 0.20
Identities = 23/44 (52%), Positives = 29/44 (65%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
E EEE+E E +EE EE+ E EE+ E+E E EE EEE E E +
Sbjct: 63 EPEEEEEPEPEEEGEEEPEPEEEGEEEPEPEETGEEEPEPEPEP 106
Score = 30.7 bits (68), Expect = 0.21
Identities = 22/44 (50%), Positives = 29/44 (65%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+ E E+E+E + EEE +EE E +EE EEE E EE EEE E +
Sbjct: 60 PDDEPEEEEEPEPEEEGEEEPEPEEEGEEEPEPEETGEEEPEPE 103
Score = 30.3 bits (67), Expect = 0.27
Identities = 21/45 (46%), Positives = 26/45 (57%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+E E E+E EE+ E EE EEE + E E E E E E E E E +
Sbjct: 77 EEEPEPEEEGEEEPEPEETGEEEPEPEPEPEPEPEPEPEPEPEPE 121
Score = 29.9 bits (66), Expect = 0.30
Identities = 21/45 (46%), Positives = 29/45 (64%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+ +E+ E +E+ E+E E E+E EEE E +E EEE E E E E E
Sbjct: 65 EEEEEPEPEEEGEEEPEPEEEGEEEPEPEETGEEEPEPEPEPEPE 109
Score = 29.9 bits (66), Expect = 0.35
Identities = 21/41 (51%), Positives = 26/41 (63%)
Query: 115 KEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
K D+ + ++E EEEEE E +EE EEE E EEE EEE
Sbjct: 49 KVGADDTNGTDPDDEPEEEEEPEPEEEGEEEPEPEEEGEEE 89
Score = 29.2 bits (64), Expect = 0.61
Identities = 22/43 (51%), Positives = 26/43 (60%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
E EEE E EE+ EEE + EE +EE E E E E E E E E +
Sbjct: 75 EGEEEPEPEEEGEEEPEPEETGEEEPEPEPEPEPEPEPEPEPE 117
Score = 29.2 bits (64), Expect = 0.69
Identities = 20/43 (46%), Positives = 27/43 (62%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
K ++ + ++E E+EEE E EE+ EEE E EEE EEE E
Sbjct: 49 KVGADDTNGTDPDDEPEEEEEPEPEEEGEEEPEPEEEGEEEPE 91
Score = 29.2 bits (64), Expect = 0.70
Identities = 21/47 (44%), Positives = 28/47 (59%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
K + D + E EEE+E E E+E +EE E EEE EEE E E++
Sbjct: 49 KVGADDTNGTDPDDEPEEEEEPEPEEEGEEEPEPEEEGEEEPEPEET 95
Score = 27.6 bits (60), Expect = 2.3
Identities = 19/45 (42%), Positives = 27/45 (60%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
K + +D + +++ EEEE+ E EEE EEE E EEE EE+
Sbjct: 46 KGTKVGADDTNGTDPDDEPEEEEEPEPEEEGEEEPEPEEEGEEEP 90
Score = 27.2 bits (59), Expect = 3.1
Identities = 19/44 (43%), Positives = 27/44 (61%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
K + +D + ++E +EEEE + E+E EEE E EEE EEE
Sbjct: 46 KGTKVGADDTNGTDPDDEPEEEEEPEPEEEGEEEPEPEEEGEEE 89
Score = 26.5 bits (57), Expect = 5.1
Identities = 18/46 (39%), Positives = 27/46 (58%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
K ++ + D+ + + E EEE+E + EEE EEE E EEE E+
Sbjct: 43 KGEKGTKVGADDTNGTDPDDEPEEEEEPEPEEEGEEEPEPEEEGEE 88
>gnl|CDD|227701 COG5414, COG5414, TATA-binding protein-associated factor
[Transcription].
Length = 392
Score = 33.9 bits (77), Expect = 0.027
Identities = 14/43 (32%), Positives = 28/43 (65%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
E +E E ++++++EE E E +E+ + + +E EE+EE+D
Sbjct: 285 ENKEVSEGDKEQQQEEVENAEAHKEEVQSDRPDEIGEEKEEDD 327
Score = 32.8 bits (74), Expect = 0.055
Identities = 15/45 (33%), Positives = 29/45 (64%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
KE + D+EQ++EE + E +EE + + +E EE+EE++++
Sbjct: 286 NKEVSEGDKEQQQEEVENAEAHKEEVQSDRPDEIGEEKEEDDENE 330
Score = 32.8 bits (74), Expect = 0.056
Identities = 15/43 (34%), Positives = 26/43 (60%)
Query: 117 EEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
E + E+Q+EE E E ++E Q + +E EE+EE++E+
Sbjct: 290 SEGDKEQQQEEVENAEAHKEEVQSDRPDEIGEEKEEDDENEEN 332
Score = 32.4 bits (73), Expect = 0.076
Identities = 15/47 (31%), Positives = 31/47 (65%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRIL 160
+KE++ E+ E E ++E + ++ ++ EE+EE++E EE E + +L
Sbjct: 293 DKEQQQEEVENAEAHKEEVQSDRPDEIGEEKEEDDENEENERHTELL 339
Score = 32.4 bits (73), Expect = 0.079
Identities = 21/48 (43%), Positives = 32/48 (66%), Gaps = 2/48 (4%)
Query: 113 KEKEEEDEDEEQEEEEEQEE--EEEQEEQEEEEEEEEEEEEEEEEDSR 158
KE E D++++QEE E E EE Q ++ +E EE+EE++E EE+ R
Sbjct: 287 KEVSEGDKEQQQEEVENAEAHKEEVQSDRPDEIGEEKEEDDENEENER 334
Score = 31.6 bits (71), Expect = 0.14
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
E E E ++E++QEE E E +EE + + +E EE++
Sbjct: 284 IENKEVSEGDKEQQQEEVENAEAHKEEVQSDRPDEIGEEKEE 325
Score = 31.6 bits (71), Expect = 0.16
Identities = 12/42 (28%), Positives = 25/42 (59%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
E E ++ E +E++++E E + +EE + + +E EE+E
Sbjct: 283 EIENKEVSEGDKEQQQEEVENAEAHKEEVQSDRPDEIGEEKE 324
Score = 31.2 bits (70), Expect = 0.18
Identities = 17/40 (42%), Positives = 21/40 (52%)
Query: 115 KEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
KEE D E EE+EE++E EE E E +E E E
Sbjct: 308 KEEVQSDRPDEIGEEKEEDDENEENERHTELLADELNELE 347
Score = 31.2 bits (70), Expect = 0.20
Identities = 17/45 (37%), Positives = 24/45 (53%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
E + + DE EE+EE +E EE E E +E E E+ E+ R
Sbjct: 310 EVQSDRPDEIGEEKEEDDENEENERHTELLADELNELEKGIEEKR 354
Score = 31.2 bits (70), Expect = 0.21
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
K +++EE + E +EE + + +E E++EE++E EE E E
Sbjct: 294 KEQQQEEVENAEAHKEEVQSDRPDEIGEEKEEDDENEENERHTE 337
Score = 30.4 bits (68), Expect = 0.33
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 118 EDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
E EE + + E EE+EE +E EE E E +E + +
Sbjct: 305 EAHKEEVQSDRPDEIGEEKEEDDENEENERHTELLADELNEL 346
Score = 30.1 bits (67), Expect = 0.51
Identities = 15/49 (30%), Positives = 29/49 (59%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRILI 161
++++EE E+ E +EE Q + ++ +E+EE++E EE E E +
Sbjct: 295 EQQQEEVENAEAHKEEVQSDRPDEIGEEKEEDDENEENERHTELLADEL 343
Score = 28.9 bits (64), Expect = 1.1
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 115 KEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+ ++E + +E EE+EE +E EE E E +E E
Sbjct: 305 EAHKEEVQSDRPDEIGEEKEEDDENEENERHTELLADELNE 345
Score = 28.5 bits (63), Expect = 1.8
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
EED D E E +E E +EQ++EE E E +EE + R
Sbjct: 273 SEEDLDVGAAEIENKEVSEGDKEQQQEEVENAEAHKEEVQSDR 315
Score = 27.7 bits (61), Expect = 2.6
Identities = 12/45 (26%), Positives = 24/45 (53%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+ +EE + + +E E++EE+++ E+ E E +E E E
Sbjct: 305 EAHKEEVQSDRPDEIGEEKEEDDENEENERHTELLADELNELEKG 349
Score = 27.4 bits (60), Expect = 4.5
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
E +E+ ++ +E +E+EE+ E +E E E +E E + I
Sbjct: 305 EAHKEEVQSDRPDEIGEEKEEDDENEENERHTELLADELNELEKGI 350
Score = 26.2 bits (57), Expect = 9.4
Identities = 12/48 (25%), Positives = 26/48 (54%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRIL 160
+E E + +E+ + + +E E++E+++E EE E E ++ L
Sbjct: 299 EEVENAEAHKEEVQSDRPDEIGEEKEEDDENEENERHTELLADELNEL 346
>gnl|CDD|217861 pfam04050, Upf2, Up-frameshift suppressor 2. Transcripts
harbouring premature signals for translation termination
are recognised and rapidly degraded by eukaryotic cells
through a pathway known as nonsense-mediated mRNA decay.
In Saccharomyces cerevisiae, three trans-acting factors
(Upf1 to Upf3) are required for nonsense-mediated mRNA
decay.
Length = 171
Score = 33.1 bits (76), Expect = 0.029
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
E+E+ EE E++E +EEE +E++EE + EEE+
Sbjct: 12 EDEELPEEDEDDESSDEEEVDLPDDEQDEESDSEEEQIFVTR 53
Score = 32.7 bits (75), Expect = 0.039
Identities = 14/41 (34%), Positives = 28/41 (68%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+ E+++E EE+E+ E +E+E ++E++EE + EEE+
Sbjct: 9 DGEEDEELPEEDEDDESSDEEEVDLPDDEQDEESDSEEEQI 49
Score = 32.7 bits (75), Expect = 0.043
Identities = 16/41 (39%), Positives = 26/41 (63%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
E+ED++ EEE + ++E+ EE + EEE+ +EEE D
Sbjct: 19 EDEDDESSDEEEVDLPDDEQDEESDSEEEQIFVTRQEEEVD 59
Score = 32.0 bits (73), Expect = 0.073
Identities = 14/43 (32%), Positives = 27/43 (62%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
++E +EDE+ E +E+E + +EQ+EE + EEE+ ++
Sbjct: 13 DEELPEEDEDDESSDEEEVDLPDDEQDEESDSEEEQIFVTRQE 55
Score = 31.6 bits (72), Expect = 0.092
Identities = 17/42 (40%), Positives = 27/42 (64%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
E+E + D+EQ+EE + EEE+ ++EEE + E E E + E
Sbjct: 28 EEEVDLPDDEQDEESDSEEEQIFVTRQEEEVDPEAEAEFDRE 69
Score = 31.6 bits (72), Expect = 0.11
Identities = 16/40 (40%), Positives = 27/40 (67%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
EE+++DE +EEE ++EQ+E+ + EEE+ +EEE
Sbjct: 18 EEDEDDESSDEEEVDLPDDEQDEESDSEEEQIFVTRQEEE 57
Score = 31.2 bits (71), Expect = 0.13
Identities = 17/44 (38%), Positives = 29/44 (65%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
E + D+ +E+EE EE+E+ E +EEE + ++E++EE DS
Sbjct: 1 SGSESESDDGEEDEELPEEDEDDESSDEEEVDLPDDEQDEESDS 44
Score = 30.8 bits (70), Expect = 0.18
Identities = 16/48 (33%), Positives = 33/48 (68%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRILI 161
E E +D +E++E EE E++E +E+E + ++E++EE + E+ +I +
Sbjct: 4 ESESDDGEEDEELPEEDEDDESSDEEEVDLPDDEQDEESDSEEEQIFV 51
Score = 30.8 bits (70), Expect = 0.18
Identities = 16/45 (35%), Positives = 32/45 (71%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
+ EE++E E++E++E +EEE + ++E++EE + EEE+ +R
Sbjct: 9 DGEEDEELPEEDEDDESSDEEEVDLPDDEQDEESDSEEEQIFVTR 53
Score = 30.8 bits (70), Expect = 0.18
Identities = 15/43 (34%), Positives = 26/43 (60%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
++ E DE+E ++EQ+EE + EE++ +EEE + E E
Sbjct: 21 EDDESSDEEEVDLPDDEQDEESDSEEEQIFVTRQEEEVDPEAE 63
Score = 30.8 bits (70), Expect = 0.19
Identities = 16/43 (37%), Positives = 29/43 (67%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
E EEDED+E +EEE + ++++++E + EEE+ +EE+
Sbjct: 15 ELPEEDEDDESSDEEEVDLPDDEQDEESDSEEEQIFVTRQEEE 57
Score = 29.7 bits (67), Expect = 0.51
Identities = 13/41 (31%), Positives = 27/41 (65%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEE 152
P+E E+++ +E+E + +E++E+ + EEE+ +EEE
Sbjct: 17 PEEDEDDESSDEEEVDLPDDEQDEESDSEEEQIFVTRQEEE 57
Score = 29.3 bits (66), Expect = 0.63
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 118 EDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
+ E ++ EE EE E++E +E +EEE + ++E+D
Sbjct: 1 SGSESESDDGEEDEELPEEDEDDESSDEEEVDLPDDEQDEE 41
Score = 28.1 bits (63), Expect = 1.7
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
++++DEE + EEEQ QEE+ + E E E + E E
Sbjct: 34 PDDEQDEESDSEEEQIFVTRQEEEVDPEAEAEFDREFE 71
>gnl|CDD|216269 pfam01056, Myc_N, Myc amino-terminal region. The myc family
belongs to the basic helix-loop-helix leucine zipper
class of transcription factors, see pfam00010. Myc forms
a heterodimer with Max, and this complex regulates cell
growth through direct activation of genes involved in
cell replication. Mutations in the C-terminal 20
residues of this domain cause unique changes in the
induction of apoptosis, transformation, and G2 arrest.
Length = 329
Score = 33.8 bits (77), Expect = 0.031
Identities = 16/23 (69%), Positives = 17/23 (73%)
Query: 134 EEQEEQEEEEEEEEEEEEEEEED 156
E EE+EEEEEEEEEEEE D
Sbjct: 223 GSDSESEEDEEEEEEEEEEEEID 245
Score = 33.0 bits (75), Expect = 0.055
Identities = 14/21 (66%), Positives = 17/21 (80%)
Query: 133 EEEQEEQEEEEEEEEEEEEEE 153
+ E +E+EEEEEEEEEEEE
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
Score = 32.6 bits (74), Expect = 0.077
Identities = 15/21 (71%), Positives = 16/21 (76%)
Query: 131 EEEEEQEEQEEEEEEEEEEEE 151
+ E EE EEEEEEEEEEEE
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
Score = 31.1 bits (70), Expect = 0.20
Identities = 13/21 (61%), Positives = 17/21 (80%)
Query: 132 EEEEQEEQEEEEEEEEEEEEE 152
+ + E++EEEEEEEEEEEE
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
Score = 31.1 bits (70), Expect = 0.20
Identities = 13/21 (61%), Positives = 17/21 (80%)
Query: 127 EEEQEEEEEQEEQEEEEEEEE 147
+ E EE++EE+EEEEEEEE
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
Score = 30.7 bits (69), Expect = 0.34
Identities = 14/21 (66%), Positives = 15/21 (71%)
Query: 128 EEQEEEEEQEEQEEEEEEEEE 148
E EE EE+EEEEEEEEE
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
Score = 30.3 bits (68), Expect = 0.35
Identities = 12/20 (60%), Positives = 17/20 (85%)
Query: 125 EEEEEQEEEEEQEEQEEEEE 144
+ E +E+EEE+EE+EEEEE
Sbjct: 224 SDSESEEDEEEEEEEEEEEE 243
Score = 30.3 bits (68), Expect = 0.36
Identities = 12/20 (60%), Positives = 17/20 (85%)
Query: 122 EEQEEEEEQEEEEEQEEQEE 141
+ E EE++EEEEE+EE+EE
Sbjct: 224 SDSESEEDEEEEEEEEEEEE 243
Score = 30.3 bits (68), Expect = 0.37
Identities = 13/21 (61%), Positives = 17/21 (80%)
Query: 125 EEEEEQEEEEEQEEQEEEEEE 145
+ E EE+EE+EE+EEEEEE
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
Score = 30.3 bits (68), Expect = 0.37
Identities = 11/20 (55%), Positives = 17/20 (85%)
Query: 116 EEEDEDEEQEEEEEQEEEEE 135
+ + +E++EEEEE+EEEEE
Sbjct: 224 SDSESEEDEEEEEEEEEEEE 243
Score = 29.9 bits (67), Expect = 0.50
Identities = 13/20 (65%), Positives = 16/20 (80%)
Query: 114 EKEEEDEDEEQEEEEEQEEE 133
E +EDEE+EEEEE+EEE
Sbjct: 224 SDSESEEDEEEEEEEEEEEE 243
Score = 29.9 bits (67), Expect = 0.50
Identities = 13/21 (61%), Positives = 17/21 (80%)
Query: 129 EQEEEEEQEEQEEEEEEEEEE 149
+ E E++E+EEEEEEEEEE
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
Score = 29.9 bits (67), Expect = 0.55
Identities = 13/20 (65%), Positives = 17/20 (85%)
Query: 120 EDEEQEEEEEQEEEEEQEEQ 139
D E EE+EE+EEEEE+EE+
Sbjct: 224 SDSESEEDEEEEEEEEEEEE 243
Score = 29.9 bits (67), Expect = 0.60
Identities = 13/21 (61%), Positives = 16/21 (76%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQ 136
+ E EE EEEEE+EEEEE+
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
Score = 29.1 bits (65), Expect = 0.84
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 118 EDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+ E +E+EEE+EEEEE+EE + E+ + +
Sbjct: 223 GSDSESEEDEEEEEEEEEEEEIDVVTVEKRRSSSNRKAST 262
Score = 28.7 bits (64), Expect = 1.2
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 117 EEDEDEEQEEEEEQEEEEEQE 137
D + E++EEEE+EEEEE+E
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
Score = 28.7 bits (64), Expect = 1.2
Identities = 10/18 (55%), Positives = 16/18 (88%)
Query: 112 PKEKEEEDEDEEQEEEEE 129
+ +E+E+E+EE+EEEEE
Sbjct: 226 SESEEDEEEEEEEEEEEE 243
Score = 28.7 bits (64), Expect = 1.3
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 138 EQEEEEEEEEEEEEEEEEDSRI 159
+ E EE+EEEEEEEEE+ I
Sbjct: 223 GSDSESEEDEEEEEEEEEEEEI 244
>gnl|CDD|227466 COG5137, COG5137, Histone chaperone involved in gene silencing
[Transcription / Chromatin structure and dynamics].
Length = 279
Score = 33.4 bits (76), Expect = 0.035
Identities = 19/43 (44%), Positives = 22/43 (51%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
E+EE E+ + EEEE EE E E EEEEEE E
Sbjct: 177 EEEERLEESDGREEEEDEEVGSDSYGEGNRELNEEEEEEAEGS 219
Score = 33.0 bits (75), Expect = 0.047
Identities = 18/45 (40%), Positives = 23/45 (51%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
P EE+E E+ + E+EE+EE E E EEEEEE
Sbjct: 172 PDVDNEEEERLEESDGREEEEDEEVGSDSYGEGNRELNEEEEEEA 216
Score = 32.3 bits (73), Expect = 0.093
Identities = 19/44 (43%), Positives = 24/44 (54%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+EEE +E EEE++EE + E E EEEEEE E S
Sbjct: 176 NEEEERLEESDGREEEEDEEVGSDSYGEGNRELNEEEEEEAEGS 219
Score = 30.7 bits (69), Expect = 0.27
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
E+ + E+EE EE E E EEEEEE E ++ E+
Sbjct: 183 EESDGREEEEDEEVGSDSYGEGNRELNEEEEEEAEGSDDGEDV 225
Score = 30.0 bits (67), Expect = 0.48
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+E+ EE + E+EE+EE + E E EEEEEE E ++
Sbjct: 179 EERLEESDGREEEEDEEVGSDSYGEGNRELNEEEEEEAEGSDD 221
Score = 28.4 bits (63), Expect = 1.5
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 7/50 (14%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEE-------EEEEEEEEEEEEEED 156
+ D D E+EE E+ + E+EE EE E E EEEEEE +
Sbjct: 168 PPAQPDVDNEEEERLEESDGREEEEDEEVGSDSYGEGNRELNEEEEEEAE 217
Score = 28.4 bits (63), Expect = 1.8
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+ + +E + +EE++EE + E + EEEEEE E ++ ED
Sbjct: 179 EERLEESDGREEEEDEEVGSDSYGEGNRELNEEEEEEAEGSDDGED 224
Score = 27.3 bits (60), Expect = 4.4
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+ DED ++ + + + E+EE+ EE + EEEE+EE
Sbjct: 158 WDNDEDNDEAPPAQPDVDNEEEERLEESDGREEEEDEEVGS 198
Score = 26.5 bits (58), Expect = 6.9
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 115 KEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
+EEEDE+ + E E +EE+EE E ++ E+ + E RI
Sbjct: 189 EEEEDEEVGSDSYGEGNRELNEEEEEEAEGSDDGEDVVDYEGERI 233
Score = 26.5 bits (58), Expect = 7.5
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEE----EEEEEEEDSRIL 160
E+EE + ++ E+ + E E ++Q EEEE EEE E E EE+S
Sbjct: 212 EEEEAEGSDDGEDVVDYEGERIDKKQGEEEEMEEEVINLFEIEWEEESPSE 262
Score = 26.1 bits (57), Expect = 9.7
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
KP+ + E+ +E + + EEEE EE + EEEED +
Sbjct: 148 KPRVTRFNIVWDNDEDNDEAPPAQPDVDNEEEERLEESDGREEEEDEEV 196
>gnl|CDD|235449 PRK05415, PRK05415, hypothetical protein; Provisional.
Length = 341
Score = 33.3 bits (77), Expect = 0.036
Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 110 IKPK-EKEEEDEDEEQEEE-EEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+KP+ + +EE +EE+E E Q+ +EQE +EEEEEE E E
Sbjct: 5 LKPRIDFDEEPLEEEEEPELRAQQAFDEQEAFAPAAPDEEEEEEGELE 52
Score = 27.9 bits (63), Expect = 2.6
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 109 MIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
M +P + + ++E EEEEE E +Q E+E +EEEEE+ +
Sbjct: 1 MSEPLKPRIDFDEEPLEEEEEPELRAQQAFDEQEAFAPAAPDEEEEEEGEL 51
>gnl|CDD|237035 PRK12280, rplW, 50S ribosomal protein L23; Reviewed.
Length = 158
Score = 32.8 bits (75), Expect = 0.036
Identities = 11/36 (30%), Positives = 26/36 (72%)
Query: 125 EEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRIL 160
EE E+E++E +E EE+E + ++E++E+++ ++
Sbjct: 92 PEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVA 127
Score = 31.7 bits (72), Expect = 0.091
Identities = 9/35 (25%), Positives = 26/35 (74%)
Query: 119 DEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
+E ++E++E +E E++E + ++E++E++E++
Sbjct: 91 FPEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKK 125
Score = 31.7 bits (72), Expect = 0.094
Identities = 10/34 (29%), Positives = 26/34 (76%)
Query: 117 EEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEE 150
E+ ++EQ+E ++ EE+E + ++E++E++E++
Sbjct: 92 PEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKK 125
Score = 30.9 bits (70), Expect = 0.19
Identities = 10/33 (30%), Positives = 25/33 (75%)
Query: 123 EQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+E E+EQ+E ++ E++E + ++E++E++E+
Sbjct: 92 PEESEKEQKEVSKETEEKEAIKAKKEKKEKKEK 124
Score = 30.9 bits (70), Expect = 0.19
Identities = 11/35 (31%), Positives = 26/35 (74%)
Query: 121 DEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
E+ E+E++E +E EE+E + ++E++E++E++
Sbjct: 91 FPEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKK 125
Score = 30.5 bits (69), Expect = 0.21
Identities = 9/34 (26%), Positives = 26/34 (76%)
Query: 118 EDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEE 151
+E E++++E +E EE++ + ++E++E++E++
Sbjct: 92 PEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKK 125
Score = 30.1 bits (68), Expect = 0.28
Identities = 12/34 (35%), Positives = 25/34 (73%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEE 149
EE E E++E +E EE+E + ++E++E++E++
Sbjct: 92 PEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKK 125
Score = 29.3 bits (66), Expect = 0.64
Identities = 10/36 (27%), Positives = 27/36 (75%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEE 145
+ P+E E+E ++ +E EE++ + ++E++E++E++
Sbjct: 90 LFPEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKK 125
Score = 28.6 bits (64), Expect = 1.1
Identities = 9/34 (26%), Positives = 24/34 (70%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEE 147
+E E E +E +E E++E + +++++E++E++
Sbjct: 92 PEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKK 125
>gnl|CDD|224530 COG1614, CdhC, CO dehydrogenase/acetyl-CoA synthase beta subunit
[Energy production and conversion].
Length = 470
Score = 33.6 bits (77), Expect = 0.037
Identities = 16/27 (59%), Positives = 19/27 (70%)
Query: 129 EQEEEEEQEEQEEEEEEEEEEEEEEEE 155
E+ EEE+EE+EEEEEE E E EE
Sbjct: 399 ERWAEEEEEEEEEEEEEAAEAEAPMEE 425
Score = 32.9 bits (75), Expect = 0.057
Identities = 16/27 (59%), Positives = 18/27 (66%)
Query: 128 EEQEEEEEQEEQEEEEEEEEEEEEEEE 154
E EEEE+EE+EEEEE E E EE
Sbjct: 399 ERWAEEEEEEEEEEEEEAAEAEAPMEE 425
Score = 32.9 bits (75), Expect = 0.063
Identities = 16/30 (53%), Positives = 18/30 (60%)
Query: 122 EEQEEEEEQEEEEEQEEQEEEEEEEEEEEE 151
E EEEE+EEEEE+EE E E EE
Sbjct: 399 ERWAEEEEEEEEEEEEEAAEAEAPMEEPVP 428
Score = 32.5 bits (74), Expect = 0.078
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 115 KEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEE 152
KE+ E+ EEE+EEEEE+EE+ E E EE
Sbjct: 391 KEKGHPVVERWAEEEEEEEEEEEEEAAEAEAPMEEPVP 428
Score = 32.1 bits (73), Expect = 0.11
Identities = 18/38 (47%), Positives = 21/38 (55%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEE 150
KEK + EEEEE+EEEEE+E E E EE
Sbjct: 391 KEKGHPVVERWAEEEEEEEEEEEEEAAEAEAPMEEPVP 428
Score = 32.1 bits (73), Expect = 0.12
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 126 EEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
E +EEEEE+EE+EEE E E EE
Sbjct: 399 ERWAEEEEEEEEEEEEEAAEAEAPMEEPVP 428
Score = 31.3 bits (71), Expect = 0.18
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 125 EEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
E E+EEEEE+EE+EE E E EE
Sbjct: 399 ERWAEEEEEEEEEEEEEAAEAEAPMEEPVP 428
Score = 30.2 bits (68), Expect = 0.46
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 124 QEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+E+ E +EE+EEEEEEEEE E E
Sbjct: 391 KEKGHPVVERWAEEEEEEEEEEEEEAAEAEAP 422
Score = 28.6 bits (64), Expect = 1.7
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEE 144
P + +E+EE+EEEEE+E E + EE
Sbjct: 396 PVVERWAEEEEEEEEEEEEEAAEAEAPMEEPVP 428
>gnl|CDD|217476 pfam03286, Pox_Ag35, Pox virus Ag35 surface protein.
Length = 198
Score = 32.8 bits (75), Expect = 0.040
Identities = 12/43 (27%), Positives = 26/43 (60%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
K K+K++E EE+++ E +++ E+ E + + EE + +E
Sbjct: 67 KSKKKDKEKLTEEEKKPESDDDKTEENENDPDNNEESGDSQES 109
Score = 32.0 bits (73), Expect = 0.069
Identities = 12/47 (25%), Positives = 25/47 (53%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
K+ + +D+E+ EEE++ E + ++ EE E + + EE +
Sbjct: 62 PATTKKSKKKDKEKLTEEEKKPESDDDKTEENENDPDNNEESGDSQE 108
Score = 31.3 bits (71), Expect = 0.14
Identities = 11/48 (22%), Positives = 24/48 (50%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+ ++K E D+D+ +E E + + EE + +E + + E+D
Sbjct: 77 TEEEKKPESDDDKTEENENDPDNNEESGDSQESASANSLSDIDNEDDM 124
Score = 30.9 bits (70), Expect = 0.18
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
K KEK E E+++ E ++++ EE E + EE + +E S I
Sbjct: 71 KDKEKLTE-EEKKPESDDDKTEENENDPDNNEESGDSQESASANSLSDI 118
Score = 30.1 bits (68), Expect = 0.33
Identities = 11/44 (25%), Positives = 27/44 (61%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
P++ + +++++E+ EEE++ E +++ EE E + + EE
Sbjct: 59 PRKPATTKKSKKKDKEKLTEEEKKPESDDDKTEENENDPDNNEE 102
Score = 28.6 bits (64), Expect = 1.1
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
K K EEE + E +++ E E E + + EE + +E D
Sbjct: 72 DKEKLTEEEKKPESDDDKTE-ENENDPDNNEESGDSQESASANSLSDI 118
Score = 26.3 bits (58), Expect = 7.7
Identities = 9/44 (20%), Positives = 21/44 (47%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
K + ++D+ EE E + + EE ++ + + E++ D
Sbjct: 82 KPESDDDKTEENENDPDNNEESGDSQESASANSLSDIDNEDDMD 125
>gnl|CDD|222977 PHA03089, PHA03089, late transcription factor VLTF-4; Provisional.
Length = 191
Score = 32.9 bits (75), Expect = 0.045
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
K KE+ E EE + EE EE +++ + E + + E E+
Sbjct: 72 KEKEEVPELAAEELSDSEENEENDKKVDYELPKVQNTAAEVNHEDVI 118
Score = 31.7 bits (72), Expect = 0.093
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
K KEKEE E +E + +E EE ++ + E + + E + I
Sbjct: 70 KKKEKEEVPELAAEELSDSEENEENDKKVDYELPKVQNTAAEVNHEDVI 118
Score = 31.3 bits (71), Expect = 0.16
Identities = 10/44 (22%), Positives = 25/44 (56%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
K+ +++ +++E+ E EE + EE EE +++ + E + +
Sbjct: 63 TTKKTKKKKKEKEEVPELAAEELSDSEENEENDKKVDYELPKVQ 106
Score = 30.9 bits (70), Expect = 0.18
Identities = 12/48 (25%), Positives = 28/48 (58%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
P++K+ + +++++E+E+ E EE + EE EE +++ + E
Sbjct: 56 TTPRKKKTTKKTKKKKKEKEEVPELAAEELSDSEENEENDKKVDYELP 103
Score = 30.5 bits (69), Expect = 0.28
Identities = 12/47 (25%), Positives = 24/47 (51%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
K+K+E++E E EE + EE +E ++ + E + + E +
Sbjct: 67 TKKKKKEKEEVPELAAEELSDSEENEENDKKVDYELPKVQNTAAEVN 113
Score = 29.4 bits (66), Expect = 0.57
Identities = 11/48 (22%), Positives = 26/48 (54%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
K +K ++ + E++E E EE E+ EE +++ + E + +++
Sbjct: 61 KKTTKKTKKKKKEKEEVPELAAEELSDSEENEENDKKVDYELPKVQNT 108
Score = 29.0 bits (65), Expect = 0.75
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
K K+KE+E+ E EE EE E+ +++ + E + + E +
Sbjct: 68 KKKKKEKEEVPELAAEELSDSEENEENDKKVDYELPKVQNTAAEVNHE 115
Score = 28.6 bits (64), Expect = 1.1
Identities = 12/47 (25%), Positives = 25/47 (53%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
K+K + ++++E+EE E +E + EE EE +++ + E
Sbjct: 58 PRKKKTTKKTKKKKKEKEEVPELAAEELSDSEENEENDKKVDYELPK 104
Score = 28.2 bits (63), Expect = 1.5
Identities = 11/47 (23%), Positives = 25/47 (53%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
K K ++ + ++++EE + EE + EE EE +++ + E +
Sbjct: 60 KKKTTKKTKKKKKEKEEVPELAAEELSDSEENEENDKKVDYELPKVQ 106
Score = 27.1 bits (60), Expect = 3.6
Identities = 10/46 (21%), Positives = 27/46 (58%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
K ++++ + +++++E+EE E +E + EE EE +++ +
Sbjct: 55 KTTPRKKKTTKKTKKKKKEKEEVPELAAEELSDSEENEENDKKVDY 100
>gnl|CDD|222948 PHA02941, PHA02941, hypothetical protein; Provisional.
Length = 356
Score = 33.0 bits (75), Expect = 0.045
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 8/57 (14%)
Query: 109 MIKPKEKEEEDEDEEQEEEEEQEEE--------EEQEEQEEEEEEEEEEEEEEEEDS 157
M+K K+ EE+E ++E +E+ EE E+ +E++EEEE EEEEE D+
Sbjct: 296 MVKVAAKDLILGGEEKEPKQESQEQLFNPFAIDEEMLEETQEQQEEEENEEEEENDT 352
>gnl|CDD|215521 PLN02967, PLN02967, kinase.
Length = 581
Score = 33.1 bits (75), Expect = 0.048
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
K E+ ++ + E + EE E E E EEE + E+++ ED
Sbjct: 145 KMDEDVEDQGSESEVSDVEESEFVTSLENESEEELDLEKDDGED 188
Score = 26.5 bits (58), Expect = 6.8
Identities = 14/46 (30%), Positives = 21/46 (45%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+ K ++ + E+ E+Q E E + EE E E E EEE
Sbjct: 133 TEKKVRKRRKVKKMDEDVEDQGSESEVSDVEESEFVTSLENESEEE 178
>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein. The proteins in this family
are designated YL1. These proteins have been shown to be
DNA-binding and may be a transcription factor.
Length = 238
Score = 32.7 bits (75), Expect = 0.055
Identities = 23/51 (45%), Positives = 34/51 (66%), Gaps = 6/51 (11%)
Query: 114 EKEEEDEDEEQEEEEEQEEEE------EQEEQEEEEEEEEEEEEEEEEDSR 158
E+EE+DE+ E EEEEE+EE + E +E E ++EEE E+E + EE +
Sbjct: 35 EEEEDDEEFEIEEEEEEEEVDSDFDDSEDDEPESDDEEEGEKELQREERLK 85
Score = 32.0 bits (73), Expect = 0.093
Identities = 22/42 (52%), Positives = 27/42 (64%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
EE +EDE EEEE+ EE E EEEEEEEE + + +DS
Sbjct: 20 EELEEDEFFWTYLLFEEEEDDEEFEIEEEEEEEEVDSDFDDS 61
Score = 30.4 bits (69), Expect = 0.33
Identities = 19/38 (50%), Positives = 26/38 (68%)
Query: 120 EDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
E+E +E+E +EE+++EE E EEEEEEEE DS
Sbjct: 19 EEELEEDEFFWTYLLFEEEEDDEEFEIEEEEEEEEVDS 56
>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742).
This is a family of fungal proteins of unknown function.
Length = 182
Score = 32.4 bits (74), Expect = 0.055
Identities = 5/43 (11%), Positives = 33/43 (76%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
+ + +++ ++++++++++++++ ++ E+++E+E E++ E+
Sbjct: 82 QKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLED 124
Score = 32.4 bits (74), Expect = 0.061
Identities = 12/49 (24%), Positives = 35/49 (71%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
K K K+++D+D++++++++ ++ E+++E+E E++ E+ + E S +
Sbjct: 88 KKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSETLSTL 136
Score = 32.0 bits (73), Expect = 0.090
Identities = 8/50 (16%), Positives = 36/50 (72%), Gaps = 3/50 (6%)
Query: 113 KEKEEED---EDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
KE EE+ +++ ++++ +++++++++++++ E+++E+E E++ +
Sbjct: 76 KEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDL 125
Score = 31.6 bits (72), Expect = 0.098
Identities = 8/50 (16%), Positives = 31/50 (62%)
Query: 108 WMIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
W K +K+++ + ++++++++ + E++ E++ E++ E+ + E +
Sbjct: 86 WKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSETLST 135
Score = 31.6 bits (72), Expect = 0.10
Identities = 7/46 (15%), Positives = 32/46 (69%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
K+K ++ +D+++++++++++++ +++ E+E E++ E+ +
Sbjct: 85 KWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYS 130
Score = 31.6 bits (72), Expect = 0.12
Identities = 11/49 (22%), Positives = 26/49 (53%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
K K+K+++D+ ++ + E++ E+E E + ++ + E E R
Sbjct: 95 KDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSETLSTLSELKPRK 143
Score = 30.4 bits (69), Expect = 0.28
Identities = 8/44 (18%), Positives = 35/44 (79%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
K K K ++ + ++++++++ +++++++++ E+++E+E E++ E+
Sbjct: 81 KQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLED 124
Score = 30.4 bits (69), Expect = 0.28
Identities = 8/48 (16%), Positives = 34/48 (70%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRIL 160
+K++ + ++++++++ ++++++ E+++E+E E++ E+ + S L
Sbjct: 86 WKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSETL 133
Score = 30.0 bits (68), Expect = 0.33
Identities = 11/47 (23%), Positives = 36/47 (76%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
K KE EE E ++E EE+Q+ + ++++ ++++++++++++++++D
Sbjct: 63 KKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDK 109
Score = 30.0 bits (68), Expect = 0.41
Identities = 8/48 (16%), Positives = 33/48 (68%)
Query: 108 WMIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
W K K+ +++ + ++ +++++++++ E+++++E E++ E+ + E
Sbjct: 84 WKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSE 131
Score = 26.2 bits (58), Expect = 6.3
Identities = 8/46 (17%), Positives = 36/46 (78%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
K K+KE +E E+ ++E E++++ + ++++ ++++++++++++++
Sbjct: 61 KKKKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKK 106
Score = 26.2 bits (58), Expect = 7.1
Identities = 7/48 (14%), Positives = 36/48 (75%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
+K++++ EE E+ +++ EE+++ + ++++ +++++++++++D +
Sbjct: 58 TEAKKKKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDK 105
>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3. This
protein, which interacts with both microtubules and
TRAF3 (tumour necrosis factor receptor-associated factor
3), is conserved from worms to humans. The N-terminal
region is the microtubule binding domain and is
well-conserved; the C-terminal 100 residues, also
well-conserved, constitute the coiled-coil region which
binds to TRAF3. The central region of the protein is
rich in lysine and glutamic acid and carries KKE motifs
which may also be necessary for tubulin-binding, but
this region is the least well-conserved.
Length = 506
Score = 32.9 bits (75), Expect = 0.056
Identities = 14/49 (28%), Positives = 33/49 (67%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
+ K E ++EE+E+E+ +EE+++++E+ +EE ++ + +EE +E
Sbjct: 94 PAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRP 142
Score = 32.6 bits (74), Expect = 0.074
Identities = 17/48 (35%), Positives = 32/48 (66%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
K KEK +E+ + + +EE +E+ +E+++E+E++ EE + EEE R
Sbjct: 119 KKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKR 166
Score = 32.6 bits (74), Expect = 0.082
Identities = 9/48 (18%), Positives = 34/48 (70%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
+ ++++ ++E ++++E+ ++E ++ + ++E +E+ +E+E+E+E
Sbjct: 107 EKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKV 154
Score = 31.8 bits (72), Expect = 0.15
Identities = 13/41 (31%), Positives = 29/41 (70%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
K K ++ E +EEE+E+E+ +EE+++++E+ +EE ++
Sbjct: 91 KTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDR 131
Score = 31.4 bits (71), Expect = 0.16
Identities = 15/47 (31%), Positives = 34/47 (72%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
K +EKE+E EE+++++E+ +EE ++ + +EE +E+ +E+E++
Sbjct: 104 KEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEK 150
Score = 31.4 bits (71), Expect = 0.20
Identities = 13/48 (27%), Positives = 35/48 (72%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
+ KE++++ +++ +EE ++++ +EE +E+ +E+E+E+E++ EE
Sbjct: 112 QVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRD 159
Score = 30.2 bits (68), Expect = 0.39
Identities = 14/48 (29%), Positives = 33/48 (68%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
+EK+++ E ++E ++ + +EE +E++ +E+E+E+E++ EE R
Sbjct: 113 VKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDR 160
Score = 29.9 bits (67), Expect = 0.57
Identities = 16/49 (32%), Positives = 34/49 (69%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
KPKE+ ++ + +E+ +E+ +E+E+E++++ EE + EEE++ E R
Sbjct: 122 EKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVR 170
Score = 29.9 bits (67), Expect = 0.61
Identities = 11/47 (23%), Positives = 29/47 (61%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
+E +E+ +E+E+E+E++ EE ++ +EE++ E + ++ +
Sbjct: 135 EEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKK 181
Score = 28.7 bits (64), Expect = 1.3
Identities = 14/48 (29%), Positives = 31/48 (64%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
KEEE E E+ +EE+++++E+ +EE ++ + +EE +E+ ++
Sbjct: 100 NESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKE 147
Score = 28.7 bits (64), Expect = 1.5
Identities = 13/45 (28%), Positives = 26/45 (57%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
K KEE E +E+E+++E++ +E ++ EEE++ E +
Sbjct: 130 DRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSR 174
Score = 28.3 bits (63), Expect = 2.2
Identities = 16/49 (32%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Query: 111 KPKEKEEEDEDEEQEE-EEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
K K+KE+ E+ + + +EE +E+ +E+E+E+E++ EE + EE+ +
Sbjct: 117 KKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKK 165
Score = 27.5 bits (61), Expect = 3.6
Identities = 11/38 (28%), Positives = 26/38 (68%)
Query: 118 EDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+E + E +EEE+E+++ +EE+++++E+ +EE
Sbjct: 90 AKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEE 127
Score = 27.2 bits (60), Expect = 4.6
Identities = 12/48 (25%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
PKEKE+E +E++ EE ++ EEE++ + + ++ +++ ++
Sbjct: 142 PPKEKEKE---KEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNK 186
Score = 27.2 bits (60), Expect = 4.7
Identities = 11/46 (23%), Positives = 27/46 (58%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
K KEKE+E + EE + EE+++ E + ++ +++ ++++
Sbjct: 144 KEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKE 189
Score = 26.8 bits (59), Expect = 6.2
Identities = 11/48 (22%), Positives = 26/48 (54%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
K KEKE++ E+ EEE++ E + + ++ +++ +++E
Sbjct: 146 KEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEE 193
Score = 26.8 bits (59), Expect = 6.3
Identities = 13/46 (28%), Positives = 30/46 (65%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
K + + ++ + E +EEE+++EQ +EE+++++E+ +EE R
Sbjct: 86 KGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDR 131
>gnl|CDD|214395 CHL00204, ycf1, Ycf1; Provisional.
Length = 1832
Score = 33.2 bits (76), Expect = 0.056
Identities = 13/44 (29%), Positives = 27/44 (61%)
Query: 108 WMIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEE 151
W K E + D EE+ ++++++E++++EE + EE+ E E
Sbjct: 728 WNGKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKARIEIAE 771
Score = 27.0 bits (60), Expect = 5.3
Identities = 12/40 (30%), Positives = 27/40 (67%), Gaps = 3/40 (7%)
Query: 125 EEEEEQEEEEEQEEQEEEEEEEEEEEEEE---EEDSRILI 161
++ E + + EE+ ++++++E+++EEE EE +RI I
Sbjct: 730 GKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKARIEI 769
Score = 27.0 bits (60), Expect = 6.1
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 8/54 (14%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEE--------EEEED 156
K KE E +E E EEE + E E E + ++E+E EE EE ED
Sbjct: 241 KLKETSETEERVESEEETDVEIETASETKGTKQEQEGSTEEDPSPSLFSEERED 294
>gnl|CDD|202096 pfam02029, Caldesmon, Caldesmon.
Length = 431
Score = 32.7 bits (74), Expect = 0.061
Identities = 16/42 (38%), Positives = 28/42 (66%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
E+EE++E E+ EE E+ E + EQ+ + + EE ++EE+E
Sbjct: 112 EEEEKEESREEREEVEETEGVTKSEQKNDWRDAEECQKEEKE 153
Score = 30.8 bits (69), Expect = 0.28
Identities = 20/47 (42%), Positives = 29/47 (61%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
P + +ED E E EE+E+EE +EE+EE EE E + E++ D R
Sbjct: 96 PSRRMQEDSGAENETVEEEEKEESREEREEVEETEGVTKSEQKNDWR 142
Score = 30.8 bits (69), Expect = 0.31
Identities = 16/44 (36%), Positives = 29/44 (65%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+E+EE +E E + E++ + + EE ++EE+E E EEEE+ +
Sbjct: 120 REEREEVEETEGVTKSEQKNDWRDAEECQKEEKEPEPEEEEKPK 163
Score = 30.8 bits (69), Expect = 0.32
Identities = 13/44 (29%), Positives = 26/44 (59%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+EEE E+ +E EE +E E + +++ + + EE ++EE+
Sbjct: 109 ETVEEEEKEESREEREEVEETEGVTKSEQKNDWRDAEECQKEEK 152
Score = 28.8 bits (64), Expect = 1.2
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
+ K EEE++ +QEE + + EEE++ + +EE E E E
Sbjct: 226 RRKVLEEEEQRRKQEEADRKSREEEEKRRLKEEIERRRAEAAE 268
Score = 28.5 bits (63), Expect = 1.8
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
+ E E+EE+EE E+ EE E+ E + E++ + + EE
Sbjct: 106 AENETVEEEEKEESREEREEVEETEGVTKSEQKNDWRDAEECQKE 150
Score = 26.9 bits (59), Expect = 5.5
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 120 EDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
E + +E+ E E EE+E+EE EE EE EE E
Sbjct: 95 EPSRRMQEDSGAENETVEEEEKEESREEREEVEETE 130
Score = 26.5 bits (58), Expect = 6.5
Identities = 16/45 (35%), Positives = 28/45 (62%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
K++ +E + EEEEQ ++E+ +++ EEEE+ +EE E R
Sbjct: 219 LKKKREERRKVLEEEEQRRKQEEADRKSREEEEKRRLKEEIERRR 263
Score = 26.5 bits (58), Expect = 8.3
Identities = 14/38 (36%), Positives = 25/38 (65%)
Query: 121 DEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
+E +++ EE+ + E+EEQ ++EE + + EEEE R
Sbjct: 217 EELKKKREERRKVLEEEEQRRKQEEADRKSREEEEKRR 254
>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell
envelope biogenesis, outer membrane].
Length = 387
Score = 32.6 bits (74), Expect = 0.062
Identities = 14/43 (32%), Positives = 29/43 (67%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
KE+ + E ++Q EE E++ + EQ++QEE+ + E++++ E
Sbjct: 108 KERLKAQEQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAE 150
Score = 32.2 bits (73), Expect = 0.10
Identities = 12/49 (24%), Positives = 35/49 (71%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
+KPK+ E++ ++ E+E + +E++++ +E E++ + E++++EE+ +
Sbjct: 92 LKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQEEQARK 140
Score = 30.3 bits (68), Expect = 0.40
Identities = 13/51 (25%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQE---EQEEEEEEEEEEEEEEEEDSR 158
K E++ + ++E+ EE + ++ EQE + E+E + +E++++ EE +
Sbjct: 75 KKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEK 125
Score = 29.5 bits (66), Expect = 0.79
Identities = 14/52 (26%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEE---EEEEEEEEDSR 158
+K EKE E+Q++ EE E++ + E++++EE+ + E++++ E
Sbjct: 103 LKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKA 154
Score = 28.4 bits (63), Expect = 1.8
Identities = 11/48 (22%), Positives = 29/48 (60%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
+ +++ EE E + Q E+++QEE+ + E++++ E + + E ++
Sbjct: 115 EQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAK 162
Score = 27.6 bits (61), Expect = 2.9
Identities = 12/52 (23%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEE---EEEEEEEEEEEDSR 158
I+ ++ + +++++++EEQ EE + +Q E+E + E+E + +E +
Sbjct: 67 IQSQQSSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQK 118
Score = 26.1 bits (57), Expect = 9.2
Identities = 7/40 (17%), Positives = 24/40 (60%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
++ + Q+ ++ E++ ++++E+ EE + ++ E+E
Sbjct: 62 QQYGRIQSQQSSAKKGEQQRKKKEEQVAEELKPKQAAEQE 101
>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis). This nucleolar
family of proteins are involved in 60S ribosomal
biogenesis. They are specifically involved in the
processing beyond the 27S stage of 25S rRNA maturation.
This family contains sequences that bear similarity to
the glioma tumour suppressor candidate region gene 2
protein (p60). This protein has been found to interact
with herpes simplex type 1 regulatory proteins.
Length = 387
Score = 32.8 bits (75), Expect = 0.067
Identities = 12/44 (27%), Positives = 19/44 (43%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
EK + E E EE + + +EE ++E E E E +
Sbjct: 224 LEKMAPEASRLDEMSEGLLEESDDDGEEESDDESAWEGFESEYE 267
Score = 30.8 bits (70), Expect = 0.24
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
EKE + E + QE E +E++ E+ E +E E EE D
Sbjct: 204 EKEVKAEKKRQELERVEEKKLEKMAPEASRLDEMSEGLLEESDD 247
Score = 30.1 bits (68), Expect = 0.47
Identities = 12/46 (26%), Positives = 20/46 (43%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
K E +E E +E +++ EE+ ++E E E E E
Sbjct: 223 KLEKMAPEASRLDEMSEGLLEESDDDGEEESDDESAWEGFESEYEP 268
Score = 30.1 bits (68), Expect = 0.48
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+E E+E + E++ +E E+ EE++ E+ E +E E E+S
Sbjct: 201 EEYEKEVKAEKKRQELERVEEKKLEKMAPEASRLDEMSEGLLEES 245
Score = 30.1 bits (68), Expect = 0.55
Identities = 10/46 (21%), Positives = 26/46 (56%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
KEK ++ + E +EE++ +++ Q + +E +E ++E+ +
Sbjct: 285 KEKRRKELEREAKEEKQLKKKLAQLARLKEIAKEVAQKEKARARKK 330
Score = 28.9 bits (65), Expect = 1.0
Identities = 8/46 (17%), Positives = 27/46 (58%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
+ KE E E +E+++ +++ + + ++ +E ++E+ +++ R
Sbjct: 288 RRKELEREAKEEKQLKKKLAQLARLKEIAKEVAQKEKARARKKEQR 333
Score = 27.7 bits (62), Expect = 2.5
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 115 KEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+EE E E + E++ QE E +E++ E+ E +E E
Sbjct: 199 LQEEYEKEVKAEKKRQELERVEEKKLEKMAPEASRLDEMSEG 240
Score = 27.7 bits (62), Expect = 2.7
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
+E E +E +++ EEE + E E E E E + R
Sbjct: 235 DEMSEGLLEESDDDGEEESDDESAWEGFESEYEPINKPVRPKR 277
Score = 27.4 bits (61), Expect = 4.0
Identities = 10/39 (25%), Positives = 17/39 (43%)
Query: 115 KEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
E E+ + + EEE ++E E E E E + +
Sbjct: 238 SEGLLEESDDDGEEESDDESAWEGFESEYEPINKPVRPK 276
Score = 26.6 bits (59), Expect = 6.2
Identities = 14/65 (21%), Positives = 29/65 (44%), Gaps = 17/65 (26%)
Query: 112 PKEKEEEDEDEEQEEEEEQEE-----------------EEEQEEQEEEEEEEEEEEEEEE 154
E+E +DE + E E E E+ ++E E E +EE++ +++
Sbjct: 248 DGEEESDDESAWEGFESEYEPINKPVRPKRKTKAQRNKEKRRKELEREAKEEKQLKKKLA 307
Query: 155 EDSRI 159
+ +R+
Sbjct: 308 QLARL 312
Score = 26.2 bits (58), Expect = 9.3
Identities = 10/42 (23%), Positives = 18/42 (42%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
E E +E ++ EE+ ++E E E E E + +
Sbjct: 235 DEMSEGLLEESDDDGEEESDDESAWEGFESEYEPINKPVRPK 276
Score = 26.2 bits (58), Expect = 9.5
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 118 EDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
ED E +EE E+E + E++ QE E EE++ E+ E SR+
Sbjct: 193 EDHQELLQEEYEKEVKAEKKRQELERVEEKKLEKMAPEASRL 234
>gnl|CDD|220605 pfam10156, Med17, Subunit 17 of Mediator complex. This Mediator
complex subunit was formerly known as Srb4 in yeasts or
Trap80 in Drosophila and human. The Med17 subunit is
located within the head domain and is essential for cell
viability to the extent that a mutant strain of
cerevisiae lacking it shows all RNA polymerase
II-dependent transcription ceasing at non-permissive
temperatures.
Length = 454
Score = 32.7 bits (75), Expect = 0.072
Identities = 11/46 (23%), Positives = 27/46 (58%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+ + EE E + + +E +EE++++E++ ++ EE ++ EE
Sbjct: 49 LTEESLREEIAKEAAKIDFSEESDEEEDDEEDDNDDSEENKDTVEE 94
Score = 30.8 bits (70), Expect = 0.25
Identities = 11/41 (26%), Positives = 23/41 (56%)
Query: 118 EDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
E+ E+ +E + + +E EEE++EE++ ++ EE
Sbjct: 51 EESLREEIAKEAAKIDFSEESDEEEDDEEDDNDDSEENKDT 91
Score = 29.6 bits (67), Expect = 0.74
Identities = 9/32 (28%), Positives = 20/32 (62%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEE 142
+ E+E+++ED+ + EE ++ EE + +E
Sbjct: 70 ESDEEEDDEEDDNDDSEENKDTVEEFPKARDE 101
Score = 28.1 bits (63), Expect = 2.1
Identities = 9/29 (31%), Positives = 20/29 (68%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEE 141
+E +EE++DEE + ++ +E ++ EE +
Sbjct: 69 EESDEEEDDEEDDNDDSEENKDTVEEFPK 97
Score = 27.3 bits (61), Expect = 3.6
Identities = 10/37 (27%), Positives = 24/37 (64%)
Query: 109 MIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEE 145
+ K K + E+ ++EE++E+++ ++ EE ++ EE
Sbjct: 58 IAKEAAKIDFSEESDEEEDDEEDDNDDSEENKDTVEE 94
Score = 26.9 bits (60), Expect = 4.7
Identities = 13/40 (32%), Positives = 26/40 (65%)
Query: 117 EEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
EE EE +E + + E+ ++EE++EE++ ++ EE +D
Sbjct: 51 EESLREEIAKEAAKIDFSEESDEEEDDEEDDNDDSEENKD 90
>gnl|CDD|117592 pfam09026, Cenp-B_dimeris, Centromere protein B dimerisation
domain. The centromere protein B (CENP-B) dimerisation
domain is composed of two alpha-helices, which are
folded into an antiparallel configuration. Dimerisation
of CENP-B is mediated by this domain, in which monomers
dimerise to form a symmetrical, antiparallel, four-helix
bundle structure with a large hydrophobic patch in which
23 residues of one monomer form van der Waals contacts
with the other monomer. This CENP-B dimer configuration
may be suitable for capturing two distant CENP-B boxes
during centromeric heterochromatin formation.
Length = 101
Score = 31.3 bits (70), Expect = 0.074
Identities = 12/32 (37%), Positives = 27/32 (84%)
Query: 117 EEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEE 148
EED D + +EEE+ ++E+E+++ E+++E+++E
Sbjct: 9 EEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 30.9 bits (69), Expect = 0.087
Identities = 11/34 (32%), Positives = 28/34 (82%)
Query: 117 EEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEE 150
E +ED + + +EE+++++E EE ++E+++E+++E
Sbjct: 7 EGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 30.5 bits (68), Expect = 0.14
Identities = 11/35 (31%), Positives = 28/35 (80%)
Query: 125 EEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
E EE+ + + ++EE +++E+EE+++E+++E+D +
Sbjct: 7 EGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDEV 41
Score = 29.7 bits (66), Expect = 0.23
Identities = 12/34 (35%), Positives = 26/34 (76%)
Query: 120 EDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
E EE + + EEE++ +E EE+++E+++E+++E
Sbjct: 7 EGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 29.7 bits (66), Expect = 0.27
Identities = 10/34 (29%), Positives = 29/34 (85%)
Query: 123 EQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
E EE+ + + +EE+++ +E+EE+++E+++E++++
Sbjct: 7 EGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 29.7 bits (66), Expect = 0.28
Identities = 11/34 (32%), Positives = 27/34 (79%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEE 147
E EE+ + + EEE++ +E+EE ++++++E+++E
Sbjct: 7 EGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 29.4 bits (65), Expect = 0.34
Identities = 11/34 (32%), Positives = 27/34 (79%)
Query: 122 EEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
E +E+ + +EEE ++ E+EE+++E+++E+++E
Sbjct: 7 EGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 28.2 bits (62), Expect = 0.89
Identities = 10/34 (29%), Positives = 27/34 (79%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEE 149
E E++ + +EEE +++E++E+ +E+++E+++E
Sbjct: 7 EGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 28.2 bits (62), Expect = 0.91
Identities = 8/34 (23%), Positives = 29/34 (85%)
Query: 118 EDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEE 151
E E++ + +E+E++++++E++++E+++E+++E
Sbjct: 7 EGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
>gnl|CDD|237875 PRK14974, PRK14974, cell division protein FtsY; Provisional.
Length = 336
Score = 32.3 bits (74), Expect = 0.076
Identities = 20/34 (58%), Positives = 25/34 (73%)
Query: 127 EEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRIL 160
EE+ EEEEE+E E EEEEEEE+EEE++E
Sbjct: 17 EEKIEEEEEEEAPEAEEEEEEEDEEEKKEKPGFF 50
Score = 30.7 bits (70), Expect = 0.25
Identities = 20/29 (68%), Positives = 25/29 (86%)
Query: 125 EEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
EE+ E+EEEEE E EEEEEEE+EEE++E
Sbjct: 17 EEKIEEEEEEEAPEAEEEEEEEDEEEKKE 45
Score = 29.6 bits (67), Expect = 0.73
Identities = 19/29 (65%), Positives = 25/29 (86%)
Query: 122 EEQEEEEEQEEEEEQEEQEEEEEEEEEEE 150
EE+ EEEE+EE E EE+EEEE+EEE++E
Sbjct: 17 EEKIEEEEEEEAPEAEEEEEEEDEEEKKE 45
Score = 28.8 bits (65), Expect = 1.3
Identities = 18/29 (62%), Positives = 25/29 (86%)
Query: 126 EEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
EE+ +EEEEE+ + EEEEEEE+EEE++E
Sbjct: 17 EEKIEEEEEEEAPEAEEEEEEEDEEEKKE 45
Score = 28.0 bits (63), Expect = 2.2
Identities = 19/42 (45%), Positives = 29/42 (69%)
Query: 120 EDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRILI 161
E E++ EEE+EEE + E+EEEEE+EEE++E+ + I
Sbjct: 14 EKVEEKIEEEEEEEAPEAEEEEEEEDEEEKKEKPGFFDKAKI 55
Score = 27.6 bits (62), Expect = 3.1
Identities = 18/32 (56%), Positives = 26/32 (81%)
Query: 118 EDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEE 149
E +E+ EEEEE+E E +EE+EEE+EEE++E
Sbjct: 14 EKVEEKIEEEEEEEAPEAEEEEEEEDEEEKKE 45
Score = 26.1 bits (58), Expect = 8.7
Identities = 15/31 (48%), Positives = 26/31 (83%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEE 143
K +E+ +E+EE+E E +EEEEE++E+E++E
Sbjct: 15 KVEEKIEEEEEEEAPEAEEEEEEEDEEEKKE 45
>gnl|CDD|219901 pfam08555, DUF1754, Eukaryotic family of unknown function
(DUF1754). This is a eukaryotic protein family of
unknown function.
Length = 90
Score = 30.9 bits (70), Expect = 0.079
Identities = 17/47 (36%), Positives = 30/47 (63%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
K K+K + E+ E+EEE++ E + +E EE+E+ E+ E+EE+
Sbjct: 24 KKKKKKNKSKEEVVTEKEEEEKSSAESDLKEGEEDEDNEKIEQEEDG 70
Score = 26.2 bits (58), Expect = 4.2
Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
K K K +E+ E+EEEE+ E + +E EE+E+ E+ E+EE+
Sbjct: 27 KKKNKSKEEVVTEKEEEEKSSAESDLKEGEEDEDNEKIEQEEDGM 71
>gnl|CDD|115196 pfam06524, NOA36, NOA36 protein. This family consists of several
NOA36 proteins which contain 29 highly conserved
cysteine residues. The function of this protein is
unknown.
Length = 314
Score = 32.2 bits (73), Expect = 0.079
Identities = 10/41 (24%), Positives = 20/41 (48%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
E D+DE + EEE+ ++ E+ ++ +E+ D
Sbjct: 271 YESDDDEGSSSNDYDEEEDGDDDDNEDNDDTNTNHGDEDCD 311
Score = 29.9 bits (67), Expect = 0.54
Identities = 7/40 (17%), Positives = 19/40 (47%)
Query: 118 EDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+ D+++ +EEE + ++ E+ ++ +ED
Sbjct: 271 YESDDDEGSSSNDYDEEEDGDDDDNEDNDDTNTNHGDEDC 310
Score = 28.0 bits (62), Expect = 2.2
Identities = 5/39 (12%), Positives = 21/39 (53%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEE 152
+ ++DE + +E+E+ ++ + ++ ++ +E+
Sbjct: 271 YESDDDEGSSSNDYDEEEDGDDDDNEDNDDTNTNHGDED 309
>gnl|CDD|240285 PTZ00135, PTZ00135, 60S acidic ribosomal protein P0; Provisional.
Length = 310
Score = 32.3 bits (74), Expect = 0.086
Identities = 7/22 (31%), Positives = 9/22 (40%)
Query: 135 EQEEQEEEEEEEEEEEEEEEED 156
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDDM 304
Score = 31.5 bits (72), Expect = 0.13
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 132 EEEEQEEQEEEEEEEEEEEEE 152
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 30.4 bits (69), Expect = 0.31
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 133 EEEQEEQEEEEEEEEEEEEEE 153
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 30.4 bits (69), Expect = 0.34
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 131 EEEEEQEEQEEEEEEEEEEEE 151
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 30.0 bits (68), Expect = 0.50
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 128 EEQEEEEEQEEQEEEEEEEEE 148
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 30.0 bits (68), Expect = 0.54
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 134 EEQEEQEEEEEEEEEEEEEEE 154
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 29.6 bits (67), Expect = 0.56
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 129 EQEEEEEQEEQEEEEEEEEEE 149
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 29.2 bits (66), Expect = 0.94
Identities = 6/24 (25%), Positives = 8/24 (33%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEE 135
EE+EEEE+
Sbjct: 279 AAAAAAAAAAAAAAPAEEEEEEED 302
Score = 28.8 bits (65), Expect = 1.2
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 127 EEEQEEEEEQEEQEEEEEEEE 147
+EEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 27.7 bits (62), Expect = 2.5
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 126 EEEEQEEEEEQEEQEEEEEEE 146
E+EEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 27.3 bits (61), Expect = 3.4
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 120 EDEEQEEEEEQEEEEEQEEQEEE 142
EE+EE+E++
Sbjct: 281 AAAAAAAAAAAAPAEEEEEEEDD 303
Score = 26.5 bits (59), Expect = 6.7
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 123 EQEEEEEQEEEEEQEEQEEEE 143
E+EE+EE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 26.5 bits (59), Expect = 7.7
Identities = 6/24 (25%), Positives = 9/24 (37%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEE 135
EEE+EEE++
Sbjct: 280 AAAAAAAAAAAAAPAEEEEEEEDD 303
Score = 26.1 bits (58), Expect = 8.2
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 125 EEEEEQEEEEEQEEQEEEEE 144
+EE+EEE++
Sbjct: 284 AAAAAAAAAPAEEEEEEEDD 303
Score = 26.1 bits (58), Expect = 9.7
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 125 EEEEEQEEEEEQEEQEEEEEE 145
EE+EEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
>gnl|CDD|235672 PRK06012, flhA, flagellar biosynthesis protein FlhA; Validated.
Length = 697
Score = 32.4 bits (75), Expect = 0.088
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 108 WMIKPKEKEEEDEDEEQEEEEEQEEEEEQE 137
+ ++ +EK+ + E+ EEEE E EE+
Sbjct: 324 YRLRKREKKAAELAAEEAEEEEAAEPEEES 353
Score = 30.1 bits (69), Expect = 0.57
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 107 FWMIKPKEKEEEDEDEEQEEEEEQEEEEE 135
+ + K ++K E EE EEEE E EEE
Sbjct: 324 YRLRKREKKAAELAAEEAEEEEAAEPEEE 352
>gnl|CDD|221775 pfam12794, MscS_TM, Mechanosensitive ion channel inner membrane
domain 1. The small mechanosensitive channel, MscS, is
a part of the turgor-driven solute efflux system that
protects bacteria from lysis in the event of osmotic
shock. The MscS protein alone is sufficient to form a
functional mechanosensitive channel gated directly by
tension in the lipid bilayer. The MscS proteins are
heptamers of three transmembrane subunits with seven
converging M3 domains, and this domain is one of the
inner membrane domains.
Length = 339
Score = 32.2 bits (74), Expect = 0.088
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEE 143
K K E ++ EEEE+ E E EE E
Sbjct: 264 KAKRAEIL-AQRAEEEEESSEGAAETIEEPE 293
Score = 31.8 bits (73), Expect = 0.12
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 123 EQEEEEEQEEEEEQEEQEEEEEEEEEEEE 151
+ E + EE+EE E E EE E
Sbjct: 265 AKRAEILAQRAEEEEESSEGAAETIEEPE 293
Score = 31.4 bits (72), Expect = 0.15
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 129 EQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+ E + EEEEE E E EE
Sbjct: 265 AKRAEILAQRAEEEEESSEGAAETIEEPE 293
Score = 29.9 bits (68), Expect = 0.48
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 124 QEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
+ + E + +EE+E E E EE E
Sbjct: 264 KAKRAEILAQRAEEEEESSEGAAETIEEPE 293
Score = 29.9 bits (68), Expect = 0.55
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 127 EEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+ E ++ E+EEE E E EE E
Sbjct: 265 AKRAEILAQRAEEEEESSEGAAETIEEPE 293
Score = 28.3 bits (64), Expect = 1.5
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 130 QEEEEEQEEQEEEEEEEEEEEEEEEEDSRIL 160
+ + E Q EEEEE E E + L
Sbjct: 264 KAKRAEILAQRAEEEEESSEGAAETIEEPEL 294
>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein.
Mitofilin controls mitochondrial cristae morphology.
Mitofilin is enriched in the narrow space between the
inner boundary and the outer membranes, where it forms a
homotypic interaction and assembles into a large
multimeric protein complex. The first 78 amino acids
contain a typical amino-terminal-cleavable mitochondrial
presequence rich in positive-charged and hydroxylated
residues and a membrane anchor domain. In addition, it
has three centrally located coiled coil domains.
Length = 493
Score = 32.3 bits (74), Expect = 0.090
Identities = 13/50 (26%), Positives = 26/50 (52%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
+K K +E + EE+ + +E E+Q E E E+EE ++ + ++
Sbjct: 194 LKEKREELLSKLEEELLARLESKEAALEKQLRLEFEREKEELRKKYEEKL 243
Score = 27.3 bits (61), Expect = 4.3
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 115 KEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
+ +E E+Q E + E+EE ++ EE+ +E E + E
Sbjct: 214 ESKEAALEKQLRLEFEREKEELRKKYEEKLRQELERQAEA 253
Score = 26.9 bits (60), Expect = 5.6
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
E+E E +E+ EE + EEE + E +E E++ E
Sbjct: 187 EEELERALKEKREELLSKLEEELLARLESKEAALEKQLRLE 227
Score = 26.5 bits (59), Expect = 6.6
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 115 KEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
K EE+E+ E+ +E++EE + E+E E +E E++
Sbjct: 183 KAEEEEELERALKEKREELLSKLEEELLARLESKEAALEKQ 223
Score = 26.1 bits (58), Expect = 9.9
Identities = 11/43 (25%), Positives = 22/43 (51%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
E ++ E++ E E E+E+ ++ EE+ +E E + E
Sbjct: 211 ARLESKEAALEKQLRLEFEREKEELRKKYEEKLRQELERQAEA 253
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 32.5 bits (75), Expect = 0.093
Identities = 18/45 (40%), Positives = 31/45 (68%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
+ ++K EE E +E E+ +EE EE++E+ +EEE++ EE E+E
Sbjct: 530 RELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKE 574
Score = 29.4 bits (67), Expect = 1.00
Identities = 15/43 (34%), Positives = 29/43 (67%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
E+E E + EE E ++ E+ ++E +E++E+ +EEE++ EE
Sbjct: 528 LERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEE 570
Score = 29.0 bits (66), Expect = 1.3
Identities = 17/47 (36%), Positives = 29/47 (61%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRIL 160
EE E E +++ EE E ++ E+ +EE EE++E+ +EEED +
Sbjct: 523 ASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLE 569
Score = 27.9 bits (63), Expect = 2.9
Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 113 KEKEEEDEDEEQEEE-EEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRIL 160
KE E EE EE+ E+ +EEE++ +E E+E ++ +E ++E I+
Sbjct: 542 LLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEII 590
Score = 27.5 bits (62), Expect = 4.1
Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 114 EKEEEDEDEEQE-EEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
E E E E + +E E +E E+ +EE EE++E+ +EEE++ E+
Sbjct: 527 ELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEE 570
>gnl|CDD|223626 COG0552, FtsY, Signal recognition particle GTPase [Intracellular
trafficking and secretion].
Length = 340
Score = 32.2 bits (74), Expect = 0.096
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 120 EDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
++ EEE EE E ++E+ EEE+EEEE+E E
Sbjct: 1 MGFFEKLEEELEELEAEKEKIEEEDEEEEKEGWFER 36
Score = 30.7 bits (70), Expect = 0.27
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 124 QEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
E+ EEE E+ E E+E+ EEE+EEEE+E
Sbjct: 1 MGFFEKLEEELEELEAEKEKIEEEDEEEEKEGW 33
Score = 29.1 bits (66), Expect = 0.89
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 126 EEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
++ EEE EE E E+E+ EEE+EEEE++
Sbjct: 1 MGFFEKLEEELEELEAEKEKIEEEDEEEEKEGW 33
Score = 29.1 bits (66), Expect = 0.97
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 117 EEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEE 152
++ +EE EE E E+E+ E+E+EEEE+E E
Sbjct: 1 MGFFEKLEEELEELEAEKEKIEEEDEEEEKEGWFER 36
Score = 28.8 bits (65), Expect = 1.4
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 118 EDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
E+ EEE E+ E E+++ +EE+EEEE+E E
Sbjct: 1 MGFFEKLEEELEELEAEKEKIEEEDEEEEKEGWFER 36
Score = 28.4 bits (64), Expect = 1.8
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 119 DEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
E+ EEE +E E E+E+ EEE+EEEE+E E
Sbjct: 1 MGFFEKLEEELEELEAEKEKIEEEDEEEEKEGWFER 36
>gnl|CDD|221756 pfam12757, DUF3812, Protein of unknown function (DUF3812). This is
a family of fungal proteins whose function is not known.
Length = 126
Score = 31.1 bits (71), Expect = 0.10
Identities = 13/37 (35%), Positives = 24/37 (64%)
Query: 119 DEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
DE +E+ E + +EE++ ++EE + + EE +E E E
Sbjct: 87 DEIDERAEAQRARDEEKKLDEEEAKRQHEEAKERERE 123
Score = 30.7 bits (70), Expect = 0.14
Identities = 12/46 (26%), Positives = 28/46 (60%)
Query: 109 MIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
++P E ++ E Q +E+++ +E+E + + EE +E E E+++
Sbjct: 81 RVQPVLDEIDERAEAQRARDEEKKLDEEEAKRQHEEAKEREREKKK 126
Score = 29.6 bits (67), Expect = 0.35
Identities = 12/35 (34%), Positives = 23/35 (65%)
Query: 121 DEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
DE E + ++EE++ +E+E + + EE +E E E+
Sbjct: 90 DERAEAQRARDEEKKLDEEEAKRQHEEAKEREREK 124
Score = 28.8 bits (65), Expect = 0.62
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 127 EEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
E ++ +EE++ EEE + + EE +E E +
Sbjct: 94 EAQRARDEEKKLDEEEAKRQHEEAKERERE 123
>gnl|CDD|173965 cd08045, TAF4, TATA Binding Protein (TBP) Associated Factor 4
(TAF4) is one of several TAFs that bind TBP and is
involved in forming Transcription Factor IID (TFIID)
complex. The TATA Binding Protein (TBP) Associated
Factor 4 (TAF4) is one of several TAFs that bind TBP and
are involved in forming the Transcription Factor IID
(TFIID) complex. TFIID is one of seven General
Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE,
TFIIF, and TFIID) that are involved in accurate
initiation of transcription by RNA polymerase II in
eukaryote. TFIID plays an important role in the
recognition of promoter DNA and assembly of the
pre-initiation complex. TFIID complex is composed of the
TBP and at least 13 TAFs. TAFs from various species were
originally named by their predicted molecular weight or
their electrophoretic mobility in polyacrylamide gels. A
new, unified nomenclature for the pol II TAFs has been
suggested to show the relationship between TAF orthologs
and paralogs. Several hypotheses are proposed for TAFs
functions such as serving as activator-binding sites,
core-promoter recognition or a role in essential
catalytic activity. Each TAF, with the help of a
specific activator, is required only for the expression
of subset of genes and is not universally involved for
transcription as are GTFs. In yeast and human cells,
TAFs have been found as components of other complexes
besides TFIID. Several TAFs interact via histone-fold
(HFD) motifs; HFD is the interaction motif involved in
heterodimerization of the core histones and their
assembly into nucleosome octamers. The minimal HFD
contains three alpha-helices linked by two loops and is
found in core histones, TAFS and many other
transcription factors. TFIID has a histone octamer-like
substructure. TAF4 domain interacts with TAF12 and makes
a novel histone-like heterodimer that binds DNA and has
a core promoter function of a subset of genes.
Length = 212
Score = 31.9 bits (73), Expect = 0.11
Identities = 14/46 (30%), Positives = 29/46 (63%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
E+EEE++ +E+E E + + EQ +++ +E ++EE+E+ R
Sbjct: 122 LEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEEMR 167
>gnl|CDD|218673 pfam05642, Sporozoite_P67, Sporozoite P67 surface antigen. This
family consists of several Theileria P67 surface
antigens. A stage specific surface antigen of Theileria
parva, p67, is the basis for the development of an
anti-sporozoite vaccine for the control of East Coast
fever (ECF) in cattle. The antigen has been shown to
contain five distinct linear peptide sequences
recognised by sporozoite-neutralising murine monoclonal
antibodies.
Length = 727
Score = 32.3 bits (73), Expect = 0.11
Identities = 11/58 (18%), Positives = 31/58 (53%)
Query: 101 PMVSCVFWMIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
P ++ F +E E +D E+ ++ + + + E+++ + EEE+ + ++ + S+
Sbjct: 83 PNITRSFQEPVSQESEVQDNTEQNQDTKGSKTDSEEDDDDSEEEDNKSTSSKDGKGSK 140
>gnl|CDD|220371 pfam09736, Bud13, Pre-mRNA-splicing factor of RES complex. This
entry is characterized by proteins with alternating
conserved and low-complexity regions. Bud13 together
with Snu17p and a newly identified factor,
Pml1p/Ylr016c, form a novel trimeric complex. called The
RES complex, pre-mRNA retention and splicing complex.
Subunits of this complex are not essential for viability
of yeasts but they are required for efficient splicing
in vitro and in vivo. Furthermore, inactivation of this
complex causes pre-mRNA leakage from the nucleus. Bud13
contains a unique, phylogenetically conserved C-terminal
region of unknown function.
Length = 141
Score = 31.1 bits (71), Expect = 0.11
Identities = 17/47 (36%), Positives = 32/47 (68%), Gaps = 6/47 (12%)
Query: 115 KEEEDEDEEQEEEEEQEEEEEQEE------QEEEEEEEEEEEEEEEE 155
EE+ E++E+E+EE++ +EE+++E Q+EE E+ EE E+ +
Sbjct: 14 IEEKREEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLEELEKAKN 60
Score = 30.4 bits (69), Expect = 0.20
Identities = 13/45 (28%), Positives = 30/45 (66%)
Query: 109 MIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
+ KE+E+E+++ ++E+E+E + Q+E+ E+ EE E+ + +
Sbjct: 17 KREEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLEELEKAKNK 61
Score = 27.7 bits (62), Expect = 1.9
Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 8/44 (18%)
Query: 121 DEEQEEEEEQEEEEEQEEQEEEEEE--------EEEEEEEEEED 156
D E++ EE++ E+EE+E +EE+E+E EE E+ EE +
Sbjct: 13 DIEEKREEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLEELE 56
Score = 27.7 bits (62), Expect = 2.1
Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 8/43 (18%)
Query: 122 EEQEEEEEQEEEEEQEEQEEEEE--------EEEEEEEEEEED 156
EE+ EE+E+E+EE++ ++E+E+E EE E+ EE E
Sbjct: 15 EEKREEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLEELEK 57
Score = 27.3 bits (61), Expect = 2.8
Identities = 17/45 (37%), Positives = 31/45 (68%), Gaps = 8/45 (17%)
Query: 119 DEDEEQEEEEEQEEEEEQEEQEEEE--------EEEEEEEEEEEE 155
D +E++EE+E ++EE+E++E++E+E EE E+ EE E+
Sbjct: 13 DIEEKREEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLEELEK 57
Score = 26.1 bits (58), Expect = 6.8
Identities = 12/50 (24%), Positives = 31/50 (62%)
Query: 109 MIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
+ +++ E++E E +EE+E++ + +++E E+ EE E+ + + +R
Sbjct: 16 EKREEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLEELEKAKNKPLAR 65
>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit.
Transcription initiation factor IIA (TFIIA) is a
heterotrimer, the three subunits being known as alpha,
beta, and gamma, in order of molecular weight. The N and
C-terminal domains of the gamma subunit are represented
in pfam02268 and pfam02751, respectively. This family
represents the precursor that yields both the alpha and
beta subunits. The TFIIA heterotrimer is an essential
general transcription initiation factor for the
expression of genes transcribed by RNA polymerase II.
Together with TFIID, TFIIA binds to the promoter region;
this is the first step in the formation of a
pre-initiation complex (PIC). Binding of the rest of the
transcription machinery follows this step. After
initiation, the PIC does not completely dissociate from
the promoter. Some components, including TFIIA, remain
attached and re-initiate a subsequent round of
transcription.
Length = 332
Score = 32.0 bits (73), Expect = 0.12
Identities = 5/39 (12%), Positives = 23/39 (58%)
Query: 117 EEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+++ D ++++E E + ++ +++ +E+ E+ + +
Sbjct: 250 DDEGDGSDDDDDEDAIESDLDDSDDDVSDEDGEDLFDTD 288
Score = 30.5 bits (69), Expect = 0.37
Identities = 6/38 (15%), Positives = 22/38 (57%)
Query: 119 DEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+DE +++ +E+ + + ++ +++ +E+ E+ D
Sbjct: 249 SDDEGDGSDDDDDEDAIESDLDDSDDDVSDEDGEDLFD 286
Score = 28.9 bits (65), Expect = 1.1
Identities = 6/36 (16%), Positives = 18/36 (50%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEE 149
+D+D+E E + ++ ++ E+ E+ + +
Sbjct: 253 GDGSDDDDDEDAIESDLDDSDDDVSDEDGEDLFDTD 288
Score = 27.0 bits (60), Expect = 4.4
Identities = 6/36 (16%), Positives = 21/36 (58%)
Query: 121 DEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
D + E + ++++E + + ++ +++ +E+ ED
Sbjct: 248 DSDDEGDGSDDDDDEDAIESDLDDSDDDVSDEDGED 283
Score = 27.0 bits (60), Expect = 4.6
Identities = 6/37 (16%), Positives = 21/37 (56%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEE 150
E + D+D++++ E ++ + + +E+ E+ + +
Sbjct: 252 EGDGSDDDDDEDAIESDLDDSDDDVSDEDGEDLFDTD 288
>gnl|CDD|220684 pfam10310, DUF2413, Protein of unknown function (DUF2413). This is
a family of proteins conserved in fungi. The function is
not known.
Length = 436
Score = 32.1 bits (73), Expect = 0.12
Identities = 12/46 (26%), Positives = 19/46 (41%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
KP E +E+ + + E + + E EEEEE E+
Sbjct: 70 KPTESSAASSEEKPAKPRKSAESTRSSHPKSKAPSTESEEEEEPEE 115
Score = 29.4 bits (66), Expect = 0.82
Identities = 10/44 (22%), Positives = 17/44 (38%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
+E+ + + E + + E EEEEE EE +
Sbjct: 76 AASSEEKPAKPRKSAESTRSSHPKSKAPSTESEEEEEPEETPDP 119
>gnl|CDD|100109 cd05831, Ribosomal_P1, Ribosomal protein P1. This subfamily
represents the eukaryotic large ribosomal protein P1.
Eukaryotic P1 and P2 are functionally equivalent to the
bacterial protein L7/L12, but are not homologous to
L7/L12. P1 is located in the L12 stalk, with proteins
P2, P0, L11, and 28S rRNA. P1 and P2 are the only
proteins in the ribosome to occur as multimers, always
appearing as sets of heterodimers. Recent data indicate
that eukaryotes have four copies (two heterodimers),
while most archaeal species contain six copies of L12p
(three homodimers) and bacteria may have four or six
copies (two or three homodimers), depending on the
species. Experiments using S. cerevisiae P1 and P2
indicate that P1 proteins are positioned more internally
with limited reactivity in the C-terminal domains, while
P2 proteins seem to be more externally located and are
more likely to interact with other cellular components.
In lower eukaryotes, P1 and P2 are further subdivided
into P1A, P1B, P2A, and P2B, which form P1A/P2B and
P1B/P2A heterodimers. Some plant species have a third
P-protein, called P3, which is not homologous to P1 and
P2. In humans, P1 and P2 are strongly autoimmunogenic.
They play a significant role in the etiology and
pathogenesis of systemic lupus erythema (SLE). In
addition, the ribosome-inactivating protein
trichosanthin (TCS) interacts with human P0, P1, and P2,
with its primary binding site located in the C-terminal
region of P2. TCS inactivates the ribosome by
depurinating a specific adenine in the sarcin-ricin loop
of 28S rRNA.
Length = 103
Score = 30.8 bits (70), Expect = 0.12
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 134 EEQEEQEEEEEEEEEEEEEEEED 156
+ ++EE++EEEEEE ++D
Sbjct: 75 AAAAAEAKKEEKKEEEEEESDDD 97
Score = 27.3 bits (61), Expect = 1.6
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 128 EEQEEEEEQEEQEEEEEEEEEEE 150
E ++EE++EEEEEE +++
Sbjct: 75 AAAAAEAKKEEKKEEEEEESDDD 97
Score = 26.5 bits (59), Expect = 3.8
Identities = 8/20 (40%), Positives = 16/20 (80%)
Query: 132 EEEEQEEQEEEEEEEEEEEE 151
E ++E+++EEEEEE +++
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
Score = 25.4 bits (56), Expect = 8.5
Identities = 8/20 (40%), Positives = 16/20 (80%)
Query: 127 EEEQEEEEEQEEQEEEEEEE 146
E ++EE++EE+EEE +++
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
Score = 25.4 bits (56), Expect = 9.0
Identities = 8/20 (40%), Positives = 16/20 (80%)
Query: 133 EEEQEEQEEEEEEEEEEEEE 152
E +++E++EEEEEE +++
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
Score = 25.4 bits (56), Expect = 9.1
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 117 EEDEDEEQEEEEEQEEEEEQEE 138
E ++EE+++EEEEE ++
Sbjct: 75 AAAAAEAKKEEKKEEEEEESDD 96
>gnl|CDD|184885 PRK14891, PRK14891, 50S ribosomal protein L24e/unknown domain
fusion protein; Provisional.
Length = 131
Score = 31.1 bits (70), Expect = 0.12
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+ED DE E + E +EE+E E +E +E + E EE
Sbjct: 79 ADADEDADEAAEADAADEADEEEETDEAVDETADEADAEAEEA 121
Score = 30.7 bits (69), Expect = 0.18
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
E + DE +E+EE +E +E E E EE +EEE+EE E
Sbjct: 90 EADAADEADEEEETDEAVDETADEADAEAEEADEEEDEEAEA 131
Score = 30.3 bits (68), Expect = 0.21
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
E + DE EEEE E +E ++ + E EE +EEE+EE ++
Sbjct: 90 EADAADEADEEEETDEAVDETADEADAEAEEADEEEDEEAEA 131
Score = 29.9 bits (67), Expect = 0.33
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+ EE E + E+ +E E + +E +EEEE +E D
Sbjct: 65 AATAAAEAAEEAEAADADEDADEAAEADAADEADEEEETDEAVD 108
Score = 29.1 bits (65), Expect = 0.59
Identities = 11/42 (26%), Positives = 18/42 (42%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
EK E E+ E + +E +E E + +E +EE
Sbjct: 59 EKGPAAAATAAAEAAEEAEAADADEDADEAAEADAADEADEE 100
Score = 28.8 bits (64), Expect = 0.68
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
E +E E + +E+ +E E + +E +EEEE +E +E
Sbjct: 71 EAAEEAEAADADEDADEAAEADAADEADEEEETDEAVDETAD 112
Score = 28.8 bits (64), Expect = 0.74
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
E E D DE+ +E E + +E +E+EE +E +E +E + ++
Sbjct: 75 EAEAADADEDADEAAEADAADEADEEEETDEAVDETADEADAEA 118
Score = 28.8 bits (64), Expect = 0.87
Identities = 12/44 (27%), Positives = 20/44 (45%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
P + +E E +E+ E E + +E +EEEE +E
Sbjct: 62 PAAAATAAAEAAEEAEAADADEDADEAAEADAADEADEEEETDE 105
Score = 28.4 bits (63), Expect = 0.91
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
E E+ E + +E +E + + +E +EEEE +E +E +
Sbjct: 68 AAAEAAEEAEAADADEDADEAAEADAADEADEEEETDEAVDETA 111
Score = 28.4 bits (63), Expect = 0.99
Identities = 12/43 (27%), Positives = 25/43 (58%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
E + DED ++ E + +E ++EE+ +E +E +E + E +
Sbjct: 77 EAADADEDADEAAEADAADEADEEEETDEAVDETADEADAEAE 119
Score = 28.0 bits (62), Expect = 1.6
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
K E EE E + +E+ +E E + +E +EEEE +++
Sbjct: 60 KGPAAAATAAAEAAEEAEAADADEDADEAAEADAADEADEEEETDEA 106
Score = 27.2 bits (60), Expect = 3.0
Identities = 9/42 (21%), Positives = 17/42 (40%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
E+ E EE E + E+ +E E + +E ++
Sbjct: 59 EKGPAAAATAAAEAAEEAEAADADEDADEAAEADAADEADEE 100
Score = 26.8 bits (59), Expect = 3.4
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
EE + + E+ +E E + +E +EEEE +E +E +E
Sbjct: 72 AAEEAEAADADEDADEAAEADAADEADEEEETDEAVDETADEA 114
Score = 26.8 bits (59), Expect = 4.1
Identities = 12/43 (27%), Positives = 25/43 (58%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
E EE E + +E+ ++ E + ++ +EEEE +E +E ++
Sbjct: 71 EAAEEAEAADADEDADEAAEADAADEADEEEETDEAVDETADE 113
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 32.0 bits (72), Expect = 0.12
Identities = 13/44 (29%), Positives = 30/44 (68%)
Query: 115 KEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
K+ E+E++ + EE ++ EE++++ EE ++ EE+E++ E +
Sbjct: 1653 KKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKK 1696
Score = 31.6 bits (71), Expect = 0.19
Identities = 14/44 (31%), Positives = 30/44 (68%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
+E ++ +ED+++ EE ++ EE+E++ E ++E EE ++ EE
Sbjct: 1663 AAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEE 1706
Score = 30.9 bits (69), Expect = 0.33
Identities = 16/45 (35%), Positives = 32/45 (71%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
K +E ++ +EDE++ E ++E EE ++ EE +++E EE+++ EE
Sbjct: 1676 KAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEE 1720
Score = 30.9 bits (69), Expect = 0.36
Identities = 12/46 (26%), Positives = 29/46 (63%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
+E + +E++++ EE ++ EE E++ E ++E EE ++ E+ +
Sbjct: 1663 AAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELK 1708
Score = 30.5 bits (68), Expect = 0.46
Identities = 14/46 (30%), Positives = 32/46 (69%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
IK E+ ++ E+++++ EE ++ EE++++ E ++E EE ++ EE
Sbjct: 1661 IKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEE 1706
Score = 30.5 bits (68), Expect = 0.49
Identities = 18/51 (35%), Positives = 34/51 (66%), Gaps = 2/51 (3%)
Query: 110 IKPKEKEEEDEDEE--QEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
+K KE EE+ + EE + EEE + + E+ ++ EE++++ EE ++ EED +
Sbjct: 1638 LKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEK 1688
Score = 30.1 bits (67), Expect = 0.59
Identities = 13/48 (27%), Positives = 33/48 (68%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
K +E +++ E+ ++ EE+E++ E +++ EE ++ EE +++E E+ +
Sbjct: 1669 KAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKK 1716
Score = 29.7 bits (66), Expect = 0.68
Identities = 15/48 (31%), Positives = 34/48 (70%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
+ +E ++ +E +++E EE+++ EE ++ +EE + + EE ++E EED +
Sbjct: 1697 EAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKK 1744
Score = 29.7 bits (66), Expect = 0.71
Identities = 16/49 (32%), Positives = 35/49 (71%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
K +E E++ + ++E EE ++ EE +++E EE+++ EE ++ EE+++I
Sbjct: 1682 KAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKI 1730
Score = 29.7 bits (66), Expect = 0.82
Identities = 15/50 (30%), Positives = 34/50 (68%), Gaps = 4/50 (8%)
Query: 113 KEKEEED----EDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
K+ EEE+ +E ++ EE++++ EE ++ EE+E++ E ++E E+++
Sbjct: 1653 KKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAK 1702
Score = 29.3 bits (65), Expect = 1.1
Identities = 13/45 (28%), Positives = 30/45 (66%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
K +E ++ +E+ + + EE ++ EE +++ EE ++ EE+E++ E
Sbjct: 1648 KAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAE 1692
Score = 29.0 bits (64), Expect = 1.3
Identities = 14/49 (28%), Positives = 36/49 (73%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
K +E ++++ +E+++ EE ++ EEE + + EE ++E EE++++ E+++
Sbjct: 1703 KAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKK 1751
Score = 29.0 bits (64), Expect = 1.4
Identities = 13/48 (27%), Positives = 34/48 (70%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
K + +E++ +E ++ EEE + + E+ ++E EE++++ EE +++E+ +
Sbjct: 1709 KKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEK 1756
Score = 28.6 bits (63), Expect = 1.8
Identities = 14/46 (30%), Positives = 33/46 (71%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
+EK++ ++ +++E EE+++ EE ++ +EE + + EE ++ EED +
Sbjct: 1630 EEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKK 1675
Score = 28.6 bits (63), Expect = 1.9
Identities = 15/50 (30%), Positives = 35/50 (70%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
K E+ + +E ++ EEE+++ E+ +++E EE+++ EE ++ EE+++I
Sbjct: 1612 AKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKI 1661
Score = 28.2 bits (62), Expect = 2.8
Identities = 12/48 (25%), Positives = 35/48 (72%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
K ++ ++++ +E+++ EE ++ EEE + + EE ++ EE++++ E+++
Sbjct: 1634 KVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAK 1681
Score = 27.8 bits (61), Expect = 3.2
Identities = 15/46 (32%), Positives = 33/46 (71%)
Query: 115 KEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRIL 160
K+E +ED+++ EE +++EEE+++ ++EEE++ EE +E ++
Sbjct: 1736 KKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVI 1781
Score = 27.0 bits (59), Expect = 6.5
Identities = 16/52 (30%), Positives = 37/52 (71%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRILI 161
IK +E ++E E+++++ EE +++EEE+++ ++EEE++ EE ++ +I
Sbjct: 1730 IKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVI 1781
Score = 26.6 bits (58), Expect = 6.9
Identities = 15/66 (22%), Positives = 39/66 (59%)
Query: 93 QANWSRGNPMVSCVFWMIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEE 152
+A +R ++ K K +E + +E + + EE ++ EE++++ E+ +++E EE++
Sbjct: 1588 KAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKK 1647
Query: 153 EEEDSR 158
+ E+ +
Sbjct: 1648 KAEELK 1653
Score = 26.6 bits (58), Expect = 7.4
Identities = 14/48 (29%), Positives = 34/48 (70%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
K +E ++ DE ++ EE+++ +E ++ EE ++ EE+++ EE ++ E+ +
Sbjct: 1529 KAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDK 1576
Score = 26.6 bits (58), Expect = 7.4
Identities = 13/44 (29%), Positives = 28/44 (63%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
K K EE + EE +++ E+ ++ E++E++ E ++E EE ++
Sbjct: 1660 KIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKK 1703
>gnl|CDD|149343 pfam08229, SHR3_chaperone, ER membrane protein SH3. This family of
proteins are membrane localised chaperones that are
required for correct plasma membrane localisation of
amino acid permeases (AAPs). SH3 prevents AAPs proteins
from aggregating and assists in their correct folding.
In the absence of SH3, AAPs are retained in the ER.
Length = 196
Score = 31.5 bits (72), Expect = 0.13
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEE 148
E ++ EE EE + +EE+ E E++E
Sbjct: 158 EWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKES 192
Score = 30.8 bits (70), Expect = 0.25
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 121 DEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
+ + EE EE E +EEE E E++E
Sbjct: 160 KDAKLLEEFAAEEAEAAAAAKEEESAEGEKKES 192
Score = 29.2 bits (66), Expect = 0.68
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 117 EEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEE 151
E + + EE +E E +EEE E E++E
Sbjct: 158 EWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKES 192
Score = 28.8 bits (65), Expect = 0.92
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEE 150
E +D +E E+ E ++EE E E++E
Sbjct: 158 EWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKES 192
Score = 28.8 bits (65), Expect = 0.92
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 120 EDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
E ++ + EE EE + +EEE E E++E
Sbjct: 158 EWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKES 192
Score = 28.5 bits (64), Expect = 1.2
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEE 142
K EE +E + +EEE + E++E
Sbjct: 163 KLLEEFAAEEAEAAAAAKEEESAEGEKKES 192
Score = 28.5 bits (64), Expect = 1.3
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 123 EQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
E ++ + EE +E + +EEE E E+++S
Sbjct: 158 EWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKES 192
Score = 27.7 bits (62), Expect = 2.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 118 EDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEE 152
E +D + EE EE E +EEE E E++E
Sbjct: 158 EWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKES 192
Score = 25.8 bits (57), Expect = 9.9
Identities = 8/33 (24%), Positives = 17/33 (51%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEE 145
K+ + +E +E E +EE+ + E++E
Sbjct: 160 KDAKLLEEFAAEEAEAAAAAKEEESAEGEKKES 192
>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function
unknown].
Length = 652
Score = 32.0 bits (73), Expect = 0.13
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 98 RGNPMVSCVFWMIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
RG P+ + K KEEE E++ EEE+ E E+ ++ EE E EEE
Sbjct: 386 RGYPLAEAL-----SKVKEEERPREKEGTEEEERREITVYEKRIKKLEETVERLEEE 437
>gnl|CDD|237538 PRK13876, PRK13876, conjugal transfer coupling protein TraG;
Provisional.
Length = 663
Score = 31.8 bits (73), Expect = 0.13
Identities = 7/43 (16%), Positives = 20/43 (46%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+ + + ++ + E E EE + E E + +++++D
Sbjct: 592 DDDGDPDNGGIRRQPELPEHEEIVPEPRPPENEFDLLDDDDDD 634
Score = 26.8 bits (60), Expect = 6.0
Identities = 9/47 (19%), Positives = 19/47 (40%), Gaps = 7/47 (14%)
Query: 112 PKEKEEEDEDE-------EQEEEEEQEEEEEQEEQEEEEEEEEEEEE 151
++ D D E E EE E E E + +++++++
Sbjct: 589 ADGDDDGDPDNGGIRRQPELPEHEEIVPEPRPPENEFDLLDDDDDDD 635
>gnl|CDD|220785 pfam10498, IFT57, Intra-flagellar transport protein 57. Eukaryotic
cilia and flagella are specialised organelles found at
the periphery of cells of diverse organisms.
Intra-flagellar transport (IFT) is required for the
assembly and maintenance of eukaryotic cilia and
flagella, and consists of the bidirectional movement of
large protein particles between the base and the distal
tip of the organelle. IFT particles contain multiple
copies of two distinct protein complexes, A and B, which
contain at least 6 and 11 protein subunits. IFT57 is
part of complex B but is not, however, required for the
core subunits to stay associated. This protein is known
as Huntington-interacting protein-1 in humans.
Length = 355
Score = 31.6 bits (72), Expect = 0.14
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
+PK EEDE+E +E++ + EE EE+ E EE +++E +E + R
Sbjct: 123 RPKYPNEEDEEENVDEDDAEIILEEVEEEVEIEEVDDDEGTQETKYKR 170
Score = 29.7 bits (67), Expect = 0.60
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 109 MIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEE 152
P E++EE+ +E + E EE EE+ E EE +++E +E +
Sbjct: 124 PKYPNEEDEEENVDEDDAEIILEEVEEEVEIEEVDDDEGTQETK 167
Score = 29.3 bits (66), Expect = 0.95
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
K + +EE EEE E++ E +E EEE E EE +++E
Sbjct: 117 KGFSFKRPKYPNEEDEEENVDEDDAEIILEEVEEEVEIEEVDDDEGT 163
>gnl|CDD|236410 PRK09202, nusA, transcription elongation factor NusA; Validated.
Length = 470
Score = 31.8 bits (73), Expect = 0.14
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
E E DEE EE + +E E + +EE+ ++ E
Sbjct: 393 EIEGFDEETVEELRERAKEALETEALAQEEKLADDLLSLEG 433
Score = 30.2 bits (69), Expect = 0.41
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+E E E +E+ EE +E +E E E +EE+ D
Sbjct: 384 AYVPVEELLEIEGFDEETVEELRERAKEALETEALAQEEKLAD 426
Score = 30.2 bits (69), Expect = 0.48
Identities = 13/46 (28%), Positives = 21/46 (45%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
E E DE+ +E E +E E E +EE+ ++ E D +
Sbjct: 393 EIEGFDEETVEELRERAKEALETEALAQEEKLADDLLSLEGLDREL 438
Score = 29.8 bits (68), Expect = 0.63
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 117 EEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
EE + E +EE EE E+ ++ E E +EE+ ++
Sbjct: 389 EELLEIEGFDEETVEELRERAKEALETEALAQEEKLADD 427
Score = 29.5 bits (67), Expect = 0.75
Identities = 11/45 (24%), Positives = 22/45 (48%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+E E + +E+ EE +E +E E E +EE+ ++ +
Sbjct: 388 VEELLEIEGFDEETVEELRERAKEALETEALAQEEKLADDLLSLE 432
Score = 29.1 bits (66), Expect = 0.95
Identities = 11/45 (24%), Positives = 22/45 (48%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRIL 160
+EE +E +E +E E E ++E+ ++ E + E + L
Sbjct: 398 DEETVEELRERAKEALETEALAQEEKLADDLLSLEGLDRELAFKL 442
Score = 29.1 bits (66), Expect = 1.2
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
E+ EE E E +EE +E +E +E E E +EE
Sbjct: 381 EELAYVPVEELLEIEGFDEETVEELRERAKEALETEALAQEEK 423
Score = 27.9 bits (63), Expect = 2.4
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
EE E E +EE +E E +E E E +EE+ ++
Sbjct: 387 PVEELLEIEGFDEETVEELRERAKEALETEALAQEEKLADD 427
Score = 26.8 bits (60), Expect = 5.7
Identities = 10/42 (23%), Positives = 20/42 (47%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
++E +E E+ +E + E QEE+ ++ E + E
Sbjct: 398 DEETVEELRERAKEALETEALAQEEKLADDLLSLEGLDRELA 439
>gnl|CDD|218177 pfam04615, Utp14, Utp14 protein. This protein is found to be part
of a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 728
Score = 32.0 bits (73), Expect = 0.14
Identities = 21/46 (45%), Positives = 32/46 (69%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+ KEK+E DE+EE E+EEE + E+ + + E+ ++EEEEEE D
Sbjct: 446 EFKEKKESDEEEELEDEEEAKVEKVANKLLKRSEKAQKEEEEEELD 491
Score = 31.6 bits (72), Expect = 0.17
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 11/65 (16%)
Query: 108 WMIKPK-EKEEEDEDEEQEEE----------EEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
WM++ K K +E ED+E+ E +++EE E EE E E EEE +EE+
Sbjct: 352 WMLRKKLGKLKEGEDDEENSGLLSMKFMQRAEARKKEENDAEIEELRRELEGEEESDEEE 411
Query: 157 SRILI 161
+
Sbjct: 412 NEEPS 416
Score = 31.2 bits (71), Expect = 0.22
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 115 KEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
+ E +E+ + E +E E E +EE +EEE EE ++ R
Sbjct: 380 QRAEARKKEENDAEIEELRRELEGEEESDEEENEEPSKKNVGRRK 424
Score = 29.6 bits (67), Expect = 0.67
Identities = 18/50 (36%), Positives = 34/50 (68%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRIL 160
P+ E+E E ++ ++E + E +E++E EEEE E+EEE + E+ +++L
Sbjct: 426 GPENGEKEAESKKLKKENKNEFKEKKESDEEEELEDEEEAKVEKVANKLL 475
Score = 29.6 bits (67), Expect = 0.72
Identities = 14/45 (31%), Positives = 30/45 (66%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
++++E ++EE+ E+EE+ + E+ + + E+ ++EEEEEE
Sbjct: 447 FKEKKESDEEEELEDEEEAKVEKVANKLLKRSEKAQKEEEEEELD 491
Score = 28.5 bits (64), Expect = 1.5
Identities = 17/47 (36%), Positives = 32/47 (68%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
K + KE+++ DEE+E E+E+E + E+ + + E+ ++EEEEE+
Sbjct: 444 KNEFKEKKESDEEEELEDEEEAKVEKVANKLLKRSEKAQKEEEEEEL 490
Score = 28.5 bits (64), Expect = 1.8
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEE 146
K K KEE E EE + + + EE E+ E EE
Sbjct: 237 KEKLKEELKEFEELVKADPEAALEELEKLERRRAEE 272
Score = 27.7 bits (62), Expect = 3.1
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEE 149
K+EE++ E +E E E EEE +E+E EE ++
Sbjct: 384 ARKKEENDAEIEELRRELEGEEESDEEENEEPSKKNV 420
Score = 27.3 bits (61), Expect = 3.7
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 6/54 (11%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEE------EEEEEEEEEEEEDSRIL 160
K EEDEDE+ + EEE E+++E ++ E + +E E++EE+S +L
Sbjct: 321 KSVSEEDEDEDSDSEEEDEDDDEDDDDGENPWMLRKKLGKLKEGEDDEENSGLL 374
Score = 26.6 bits (59), Expect = 6.7
Identities = 9/37 (24%), Positives = 24/37 (64%)
Query: 124 QEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRIL 160
+ + +E+E+E + EEE+E+++E++++ E +
Sbjct: 319 EGKSVSEEDEDEDSDSEEEDEDDDEDDDDGENPWMLR 355
Score = 26.6 bits (59), Expect = 6.9
Identities = 13/47 (27%), Positives = 29/47 (61%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
K E ++ ++ + E +E++E +EE+E ++EEE + E+ + + S
Sbjct: 432 KEAESKKLKKENKNEFKEKKESDEEEELEDEEEAKVEKVANKLLKRS 478
Score = 26.6 bits (59), Expect = 7.3
Identities = 11/37 (29%), Positives = 26/37 (70%)
Query: 124 QEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRIL 160
E + EE+E+++ EEE+E+++E++++ E+ +L
Sbjct: 318 IEGKSVSEEDEDEDSDSEEEDEDDDEDDDDGENPWML 354
Score = 26.2 bits (58), Expect = 9.5
Identities = 14/47 (29%), Positives = 29/47 (61%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+ K + +E ++ ++EEE E EEE + E+ + + E+ ++EEE+
Sbjct: 442 ENKNEFKEKKESDEEEELEDEEEAKVEKVANKLLKRSEKAQKEEEEE 488
>gnl|CDD|165442 PHA03171, PHA03171, UL37 tegument protein; Provisional.
Length = 499
Score = 31.6 bits (71), Expect = 0.14
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 127 EEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
E +E EEE ++E + E EEE+EEEE ++
Sbjct: 81 EAGEEAEEEDNDRECPDTEAEEEDEEEEIEAP 112
Score = 31.6 bits (71), Expect = 0.19
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 127 EEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
EE +EE+ ++E + E EEE+EEEE E D +
Sbjct: 84 EEAEEEDNDRECPDTEAEEEDEEEEIEAPDPEV 116
Score = 30.4 bits (68), Expect = 0.36
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 124 QEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+E EEE + E + + EEE+EEEE E + E
Sbjct: 84 EEAEEEDNDRECPDTEAEEEDEEEEIEAPDPE 115
Score = 30.4 bits (68), Expect = 0.42
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 122 EEQEEEEEQEEEEEQEEQEEEEEEEEEEEE 151
E EE EE++ + E + E EEE+EEEE E
Sbjct: 81 EAGEEAEEEDNDRECPDTEAEEEDEEEEIE 110
Score = 30.0 bits (67), Expect = 0.58
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 125 EEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
E EE EEE+ E + E EEE+EEEE E
Sbjct: 81 EAGEEAEEEDNDRECPDTEAEEEDEEEEIE 110
Score = 29.6 bits (66), Expect = 0.78
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 122 EEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
EE EEE+ E + E +EE+EEEE E + E
Sbjct: 84 EEAEEEDNDRECPDTEAEEEDEEEEIEAPDPE 115
Score = 28.5 bits (63), Expect = 1.6
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 123 EQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
E+ EEE+ + E E EEE+EEEE E + E
Sbjct: 84 EEAEEEDNDRECPDTEAEEEDEEEEIEAPDPE 115
Score = 28.5 bits (63), Expect = 1.7
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 126 EEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
E E+ EEE+ + + + E EEE+EEEE E
Sbjct: 81 EAGEEAEEEDNDRECPDTEAEEEDEEEEIE 110
Score = 28.1 bits (62), Expect = 2.0
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEE 144
+E EEED D E + E +EE+EE+E + + E
Sbjct: 84 EEAEEEDNDRECPDTEAEEEDEEEEIEAPDPE 115
Score = 28.1 bits (62), Expect = 2.5
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 123 EQEEEEEQEEEEEQEEQEEEEEEEEEEEEE 152
E EE E+E+ + + E EEE+EEEE E
Sbjct: 81 EAGEEAEEEDNDRECPDTEAEEEDEEEEIE 110
Score = 28.1 bits (62), Expect = 2.6
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 103 VSCVFWMIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEE 146
+ +E E+ED ++E + + EEE++EE+ E + E
Sbjct: 72 RDLTAALFAEAGEEAEEEDNDRECPDTEAEEEDEEEEIEAPDPE 115
Score = 27.7 bits (61), Expect = 2.8
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEE 150
E +E EE++ + E + E +EE EEEE E + E
Sbjct: 81 EAGEEAEEEDNDRECPDTEAEEEDEEEEIEAPDPE 115
Score = 27.3 bits (60), Expect = 4.0
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEE 148
E EE E+E+ + E E EE++E+EE E + E
Sbjct: 81 EAGEEAEEEDNDRECPDTEAEEEDEEEEIEAPDPE 115
Score = 27.3 bits (60), Expect = 4.4
Identities = 12/32 (37%), Positives = 22/32 (68%)
Query: 121 DEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEE 152
+E +EE+ ++E + + E+E+EEEE E + E
Sbjct: 84 EEAEEEDNDRECPDTEAEEEDEEEEIEAPDPE 115
>gnl|CDD|219956 pfam08658, Rad54_N, Rad54 N terminal. This is the N terminal of
the DNA repair protein Rad54.
Length = 191
Score = 31.2 bits (71), Expect = 0.14
Identities = 7/30 (23%), Positives = 19/30 (63%)
Query: 132 EEEEQEEQEEEEEEEEEEEEEEEEDSRILI 161
+++ + E+E+ E+++E EE E + + +
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLSNGPKV 171
Score = 30.8 bits (70), Expect = 0.18
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 120 EDEEQEEEEEQEEEEEQEEQEEEEEE 145
+D+ + EEE+ E+++E EE E +
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLSN 167
Score = 30.8 bits (70), Expect = 0.21
Identities = 6/26 (23%), Positives = 16/26 (61%)
Query: 119 DEDEEQEEEEEQEEEEEQEEQEEEEE 144
D+ + EEE+ ++++E +E + +
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLSN 167
Score = 30.0 bits (68), Expect = 0.40
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 125 EEEEEQEEEEEQEEQEEEEEEEEEEE 150
+++ + EEE+ +++QE EE E +
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLSN 167
Score = 29.2 bits (66), Expect = 0.80
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 126 EEEEQEEEEEQEEQEEEEEEEEEEEE 151
+++ + EEE+ E+ +E EE E +
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLSN 167
Score = 28.8 bits (65), Expect = 0.87
Identities = 7/24 (29%), Positives = 15/24 (62%)
Query: 131 EEEEEQEEQEEEEEEEEEEEEEEE 154
+ + E+E+ E+++E EE E +
Sbjct: 144 KPKIEEEKAEKDQEPEESETKLSN 167
Score = 28.8 bits (65), Expect = 0.99
Identities = 7/29 (24%), Positives = 18/29 (62%)
Query: 131 EEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
++ + +EE+ E+++E EE E + ++
Sbjct: 143 DKPKIEEEKAEKDQEPEESETKLSNGPKV 171
Score = 28.8 bits (65), Expect = 1.0
Identities = 7/26 (26%), Positives = 17/26 (65%)
Query: 121 DEEQEEEEEQEEEEEQEEQEEEEEEE 146
D++ + EEE+ E++++ E+ E +
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLSN 167
Score = 28.1 bits (63), Expect = 1.6
Identities = 9/25 (36%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEE 135
KPK +EE+ +++QE EE + +
Sbjct: 144 KPKIEEEK-AEKDQEPEESETKLSN 167
Score = 27.7 bits (62), Expect = 2.1
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 117 EEDEDEEQEEEEEQEEEEEQEEQEEE 142
++ E+E+ E+ +E EE E +
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLSN 167
Score = 26.9 bits (60), Expect = 3.6
Identities = 7/26 (26%), Positives = 17/26 (65%)
Query: 118 EDEDEEQEEEEEQEEEEEQEEQEEEE 143
+D+ + +EE+ E+++E E+ E +
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLSN 167
Score = 26.9 bits (60), Expect = 3.9
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 127 EEEQEEEEEQEEQEEEEEEEEEEEEE 152
+++ + EEE+ E+++E EE E +
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLSN 167
Score = 26.9 bits (60), Expect = 4.6
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEE 133
E+E+ ++D+E EE E +
Sbjct: 144 KPKIEEEKAEKDQEPEESETKLSN 167
Score = 26.5 bits (59), Expect = 5.4
Identities = 7/25 (28%), Positives = 17/25 (68%)
Query: 131 EEEEEQEEQEEEEEEEEEEEEEEEE 155
+++ + EE++ E+++E EE E +
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLS 166
Score = 26.5 bits (59), Expect = 6.2
Identities = 7/26 (26%), Positives = 17/26 (65%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEE 141
+++ + EE++ E++QE EE + +
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLSN 167
>gnl|CDD|217902 pfam04111, APG6, Autophagy protein Apg6. In yeast, 15 Apg proteins
coordinate the formation of autophagosomes. Autophagy is
a bulk degradation process induced by starvation in
eukaryotic cells. Apg6/Vps30p has two distinct functions
in the autophagic process, either associated with the
membrane or in a retrieval step of the carboxypeptidase
Y sorting pathway.
Length = 356
Score = 31.8 bits (72), Expect = 0.15
Identities = 15/41 (36%), Positives = 27/41 (65%)
Query: 115 KEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
K+EE+ ++ EE E+E+++ E E +EE+E+ E EE +
Sbjct: 76 KKEEERLLDELEELEKEDDDLDGELVELQEEKEQLENEELQ 116
Score = 28.7 bits (64), Expect = 1.3
Identities = 17/42 (40%), Positives = 27/42 (64%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEE 151
+K +E+ DE EE E+E++ + E E QEE+E+ E EE +
Sbjct: 75 LKKEEERLLDELEELEKEDDDLDGELVELQEEKEQLENEELQ 116
Score = 27.5 bits (61), Expect = 3.2
Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 113 KEKEEEDEDEEQEEEE-EQEEEEEQEEQEEEEEEEEEEEEEEEED 156
E +E ++EE+ +E E+ E+E+ + E E +EE+E+ E E+
Sbjct: 70 SELDELKKEEERLLDELEELEKEDDDLDGELVELQEEKEQLENEE 114
Score = 26.4 bits (58), Expect = 7.6
Identities = 14/40 (35%), Positives = 26/40 (65%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEE 152
KE+E ++ E+ E+E+ + + E E +EE+E+ E EE +
Sbjct: 77 KEEERLLDELEELEKEDDDLDGELVELQEEKEQLENEELQ 116
Score = 26.0 bits (57), Expect = 9.9
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 109 MIKPKEKEEEDEDEEQEEEEEQEE-EEEQEEQEEEEEEEEEEEEEEEEDSRILI 161
+ + +E E+ E+E+++ E E QEE+E+ E EE + E R +
Sbjct: 76 KKEEERLLDELEELEKEDDDLDGELVELQEEKEQLENEELQYLREYNLFDRNNL 129
>gnl|CDD|215153 PLN02271, PLN02271, serine hydroxymethyltransferase.
Length = 586
Score = 31.7 bits (72), Expect = 0.15
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 131 EEEEEQEEQEEEEEEEEEEEEEEEEDSRIL 160
E++EE+EE EE +E+EEE+ E+E IL
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEHFSIL 82
Score = 29.4 bits (66), Expect = 0.95
Identities = 13/26 (50%), Positives = 21/26 (80%)
Query: 129 EQEEEEEQEEQEEEEEEEEEEEEEEE 154
EQ+EE+E++ EE +E+EEE+ E+E
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEH 78
Score = 29.0 bits (65), Expect = 1.0
Identities = 17/45 (37%), Positives = 28/45 (62%)
Query: 92 DQANWSRGNPMVSCVFWMIKPKEKEEEDEDEEQEEEEEQEEEEEQ 136
D + S NPM +++ KE++EED EE +E+EE++ E+E
Sbjct: 34 DSSFRSSSNPMPPIPLQLLEQKEEKEEDAGEEGDEDEEEQGEDEH 78
Score = 28.2 bits (63), Expect = 1.9
Identities = 11/26 (42%), Positives = 20/26 (76%)
Query: 119 DEDEEQEEEEEQEEEEEQEEQEEEEE 144
++ EE+EE+ +E +E++EEQ E+E
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEH 78
Score = 28.2 bits (63), Expect = 1.9
Identities = 12/26 (46%), Positives = 20/26 (76%)
Query: 128 EEQEEEEEQEEQEEEEEEEEEEEEEE 153
E++EE+EE +E +E+EEE+ E+E
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEH 78
Score = 28.2 bits (63), Expect = 2.1
Identities = 12/26 (46%), Positives = 20/26 (76%)
Query: 125 EEEEEQEEEEEQEEQEEEEEEEEEEE 150
E++EE+EE+ +E E+EEE+ E+E
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEH 78
Score = 27.8 bits (62), Expect = 2.7
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 122 EEQEEEEEQEEEEEQEEQEEEEEEEE 147
E++EE+EE EE E++EE+ E+E
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEH 78
Score = 27.8 bits (62), Expect = 3.1
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 123 EQEEEEEQEEEEEQEEQEEEEEEEEE 148
EQ+EE+E++ EE +E EEE+ E+E
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEH 78
Score = 27.8 bits (62), Expect = 3.3
Identities = 12/29 (41%), Positives = 22/29 (75%)
Query: 124 QEEEEEQEEEEEQEEQEEEEEEEEEEEEE 152
Q E+++E+EE+ E+ +E+EEE+ E+E
Sbjct: 50 QLLEQKEEKEEDAGEEGDEDEEEQGEDEH 78
Score = 27.1 bits (60), Expect = 5.0
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 130 QEEEEEQEEQEEEEEEEEEEEEEEEEDSRILI 161
Q E+++E++E+ EE +E+EEE+ ED I
Sbjct: 50 QLLEQKEEKEEDAGEEGDEDEEEQGEDEHFSI 81
>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer
membranes [Cell envelope biogenesis, outer membrane].
Length = 244
Score = 31.3 bits (71), Expect = 0.15
Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 106 VFWMIKPKEKEEEDEDEEQEEE-EEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
VF + + +E + + E EEQ + + E E + +E+ + E
Sbjct: 41 VFLLAAKVLEAPTEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPE 91
Score = 30.5 bits (69), Expect = 0.33
Identities = 9/54 (16%), Positives = 20/54 (37%)
Query: 102 MVSCVFWMIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+V+ + ++ +E E + E +E + E E EE+ +
Sbjct: 17 LVAALLFVFLHQEDFVGIELVPLAVFLLAAKVLEAPTEEPQPEPEPPEEQPKPP 70
>gnl|CDD|218055 pfam04386, SspB, Stringent starvation protein B. Escherichia coli
stringent starvation protein B (SspB), is thought to
enhance the specificity of degradation of tmRNA-tagged
proteins by the ClpXP protease. The tmRNA tag, also
known as ssrA, is an 11-aa peptide added to the C
terminus of proteins stalled during translation, targets
proteins for degradation by ClpXP and ClpAP. SspB a
cytoplasmic protein that specifically binds to residues
1-4 and 7 of the tag. Binding of SspB enhances
degradation of tagged proteins by ClpX, and masks
sequence elements important for ClpA interactions,
inhibiting degradation by ClpA. However, more recent
work has cast doubt on the importance of SspB in
wild-type cells. SspB is encoded in an operon whose
synthesis is stimulated by carbon, amino acid, and
phosphate starvation. SspB may play a special role
during nutrient stress, for example by ensuring rapid
degradation of the products of stalled translation,
without causing a global increase in degradation of all
ClpXP substrates.
Length = 153
Score = 31.0 bits (71), Expect = 0.15
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 123 EQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
E EE +E+EEEE+ + + E+E+ E ++ + R
Sbjct: 111 EPEEADEEEEEEDDDADDSPEDEDPEPKDPPKTKGR 146
Score = 30.3 bits (69), Expect = 0.29
Identities = 12/38 (31%), Positives = 24/38 (63%)
Query: 120 EDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
E EE +EEEE+E+++ + E+E+ E ++ + + S
Sbjct: 111 EPEEADEEEEEEDDDADDSPEDEDPEPKDPPKTKGRPS 148
Score = 29.5 bits (67), Expect = 0.44
Identities = 10/42 (23%), Positives = 23/42 (54%)
Query: 118 EDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
E E+ ++EEEEE ++ ++ E E+ E ++ + + +
Sbjct: 111 EPEEADEEEEEEDDDADDSPEDEDPEPKDPPKTKGRPSLKVV 152
Score = 27.9 bits (63), Expect = 1.6
Identities = 10/44 (22%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
E E+ D EEEEE++++ + ++E+ E ++ + + ++
Sbjct: 111 EPEEAD---EEEEEEDDDADDSPEDEDPEPKDPPKTKGRPSLKV 151
>gnl|CDD|237028 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed.
Length = 648
Score = 31.7 bits (73), Expect = 0.16
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 121 DEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEE 152
D E+E +E+ E +E EE+E++ E+ E
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 30.5 bits (70), Expect = 0.41
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 123 EQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
+ EEE +E+ + +E EE+E++ E+ E
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 30.2 bits (69), Expect = 0.43
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 125 EEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+ EEE +EQ E +E EE+E++ E+
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKP 541
Score = 29.4 bits (67), Expect = 0.92
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 119 DEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEE 150
D +EE +EQ E +E EE+E++ E+ E
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 29.0 bits (66), Expect = 1.2
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 125 EEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
EEE +E+ E +E EE+E++ E+ E
Sbjct: 512 VEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 29.0 bits (66), Expect = 1.3
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 122 EEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
+ +EE +E+ E +E EE+E++ E+ E
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 28.2 bits (64), Expect = 2.2
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 127 EEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRILI 161
+ E+E +E+ E +E EE+E++ E I I
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPEITI 545
Score = 27.5 bits (62), Expect = 4.2
Identities = 7/31 (22%), Positives = 18/31 (58%)
Query: 126 EEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+ EE+ +++ + +E EE+E++ E+
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKP 541
Score = 26.7 bits (60), Expect = 7.7
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 118 EDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEE 149
+ E+E +E+ E +E +E+E++ E+ E
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 26.3 bits (59), Expect = 8.0
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEE 144
+ +EE +EQ E +E EE+E++ E+ E
Sbjct: 509 RIDVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
>gnl|CDD|236154 PRK08119, PRK08119, flagellar motor switch protein; Validated.
Length = 382
Score = 31.4 bits (72), Expect = 0.16
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 117 EEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
EE+E+EE+ EEEE + E + ++E+++ R
Sbjct: 226 EEEEEEEEVEEEEAQASPAAEPATAQAAPAPKQEQQQAPPQR 267
Score = 30.6 bits (70), Expect = 0.31
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 121 DEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
EE+EEEEE EEEE Q E + ++E
Sbjct: 225 GEEEEEEEEVEEEEAQASPAAEPATAQAAPAPKQE 259
Score = 28.3 bits (64), Expect = 1.7
Identities = 10/39 (25%), Positives = 21/39 (53%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEE 151
+E+EEE+E EE+E + E + ++E+++
Sbjct: 226 EEEEEEEEVEEEEAQASPAAEPATAQAAPAPKQEQQQAP 264
>gnl|CDD|218517 pfam05236, TAF4, Transcription initiation factor TFIID component
TAF4 family. This region of similarity is found in
Transcription initiation factor TFIID component TAF4.
Length = 255
Score = 31.2 bits (71), Expect = 0.17
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEE 152
K+KEEE+ E+ E E+ E+ +++ +EE++ E EE
Sbjct: 121 KQKEEEERRVERRRELGLEDPEQLRLKQKAKEEQKAESEE 160
>gnl|CDD|235562 PRK05687, fliH, flagellar assembly protein H; Validated.
Length = 246
Score = 31.1 bits (71), Expect = 0.18
Identities = 13/40 (32%), Positives = 14/40 (35%)
Query: 119 DEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
E E E E +E EEE EEE E R
Sbjct: 26 PPPEPPPPEPAAPPPEPPEPEEVPEEEAAPLTEEELEAIR 65
Score = 30.7 bits (70), Expect = 0.28
Identities = 12/38 (31%), Positives = 14/38 (36%)
Query: 119 DEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
D D E + E E EE EEE EE+
Sbjct: 23 DFDPPPEPPPPEPAAPPPEPPEPEEVPEEEAAPLTEEE 60
Score = 29.1 bits (66), Expect = 0.78
Identities = 15/43 (34%), Positives = 18/43 (41%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
+P E E E EE EEE EEE E ++ EE
Sbjct: 29 EPPPPEPAAPPPEPPEPEEVPEEEAAPLTEEELEAIRQQAHEE 71
Score = 29.1 bits (66), Expect = 0.93
Identities = 12/37 (32%), Positives = 14/37 (37%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEE 148
P E + E E EE E+E EEE E
Sbjct: 27 PPEPPPPEPAAPPPEPPEPEEVPEEEAAPLTEEELEA 63
Score = 26.4 bits (59), Expect = 6.0
Identities = 13/44 (29%), Positives = 18/44 (40%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
P+ E E E +E EE+ EEE E ++ EE
Sbjct: 28 PEPPPPEPAAPPPEPPEPEEVPEEEAAPLTEEELEAIRQQAHEE 71
>gnl|CDD|215544 PLN03029, PLN03029, type-a response regulator protein; Provisional.
Length = 222
Score = 31.2 bits (70), Expect = 0.18
Identities = 11/49 (22%), Positives = 32/49 (65%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
K +++E +++ E+ EE E Q E++EQ Q+ + + + +++ ++ +++
Sbjct: 150 SKNQKQENQEKQEKLEESEIQSEKQEQPSQQPQSQPQPQQQPQQPNNNK 198
Score = 30.8 bits (69), Expect = 0.23
Identities = 13/46 (28%), Positives = 31/46 (67%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+KP + + ++++QE +E+QE+ EE E Q E++E+ ++ + + +
Sbjct: 141 LKPHMMKTKSKNQKQENQEKQEKLEESEIQSEKQEQPSQQPQSQPQ 186
>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed.
Length = 1068
Score = 31.5 bits (72), Expect = 0.18
Identities = 13/51 (25%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEE---EEEEEEEEEEEEEEDSR 158
K + ++E+ + +E + + +E+ Q +QE EE+ +E E+EE +
Sbjct: 664 KARTQDEQQQAPRRERQRRRNDEKRQAQQEAKALNVEEQSVQETEQEERVQ 714
Score = 30.8 bits (70), Expect = 0.28
Identities = 11/48 (22%), Positives = 15/48 (31%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+ + E D +E E E E E Q E E E +
Sbjct: 949 VVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTA 996
Score = 30.0 bits (68), Expect = 0.65
Identities = 9/52 (17%), Positives = 26/52 (50%), Gaps = 9/52 (17%)
Query: 113 KEKEEEDEDEE---------QEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
K + ++++ + +E+ + ++E + EE+ +E E+EE ++
Sbjct: 664 KARTQDEQQQAPRRERQRRRNDEKRQAQQEAKALNVEEQSVQETEQEERVQQ 715
Score = 28.5 bits (64), Expect = 1.9
Identities = 7/35 (20%), Positives = 17/35 (48%)
Query: 118 EDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEE 152
E + +Q E E+ +++++Q E + +E
Sbjct: 652 ETRESQQAEVTEKARTQDEQQQAPRRERQRRRNDE 686
Score = 27.7 bits (62), Expect = 3.6
Identities = 10/43 (23%), Positives = 23/43 (53%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
E +E+ + +Q+ E +E Q+ E E+ ++E+++ R
Sbjct: 634 ENREENRRNRRQAQQQTAETRESQQAEVTEKARTQDEQQQAPR 676
Score = 27.3 bits (61), Expect = 4.2
Identities = 8/40 (20%), Positives = 10/40 (25%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
E + E E + E E E E E
Sbjct: 962 AAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEV 1001
Score = 26.9 bits (60), Expect = 6.2
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 131 EEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
EE + +EQ + E + E +++ R
Sbjct: 583 GEETKPQEQPAPKAEAKPERQQDRRKPR 610
Score = 26.5 bits (59), Expect = 8.3
Identities = 10/41 (24%), Positives = 16/41 (39%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+E + + E Q+E + EE E E E E +
Sbjct: 939 AQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQP 979
>gnl|CDD|227492 COG5163, NOP7, Protein required for biogenesis of the 60S ribosomal
subunit [Translation, ribosomal structure and
biogenesis].
Length = 591
Score = 31.6 bits (71), Expect = 0.19
Identities = 11/51 (21%), Positives = 23/51 (45%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRIL 160
P+ E+ ++ EE+ E E EE+++++EE + + L
Sbjct: 456 YDPRASLMTMEETQRHSEEDLVNRFEDVRYEHVAGEEDDDDDEELQAQKEL 506
Score = 28.5 bits (63), Expect = 1.8
Identities = 9/41 (21%), Positives = 23/41 (56%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
++ E++ + E+ E +E+ +++EE + ++E E E
Sbjct: 469 QRHSEEDLVNRFEDVRYEHVAGEEDDDDDEELQAQKELELE 509
Score = 27.7 bits (61), Expect = 3.1
Identities = 10/40 (25%), Positives = 21/40 (52%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEE 152
+ EE+ + ++ E EE ++ +EE + ++E E E
Sbjct: 470 RHSEEDLVNRFEDVRYEHVAGEEDDDDDEELQAQKELELE 509
Score = 27.3 bits (60), Expect = 4.1
Identities = 10/50 (20%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQE----EQEEEEEEEEEEEEEEEEDS 157
EE + +E+ + E+ E E++++++EE + ++E E ++
Sbjct: 461 SLMTMEETQRHSEEDLVNRFEDVRYEHVAGEEDDDDDEELQAQKELELEA 510
Score = 27.3 bits (60), Expect = 4.6
Identities = 10/41 (24%), Positives = 20/41 (48%)
Query: 121 DEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRILI 161
D +EE E+ E E + EE+ + E+ + +D ++
Sbjct: 300 DVSKEELSEKIPELMVECRLVEEKLDTFEDNNKNKDIMEMV 340
Score = 27.3 bits (60), Expect = 4.8
Identities = 12/47 (25%), Positives = 24/47 (51%)
Query: 109 MIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
M + + +ED E+ + E EE ++++EE + ++E E E
Sbjct: 463 MTMEETQRHSEEDLVNRFEDVRYEHVAGEEDDDDDEELQAQKELELE 509
>gnl|CDD|227504 COG5177, COG5177, Uncharacterized conserved protein [Function
unknown].
Length = 769
Score = 31.2 bits (70), Expect = 0.21
Identities = 14/51 (27%), Positives = 27/51 (52%)
Query: 107 FWMIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
F+ K E EEE++ + +EE ++ + +E + EE +EE +D+
Sbjct: 387 FYQAKWAEDEEEEDGQCNDEESTMSAIDDDDPKENDNEEVAGDEESAIDDN 437
Score = 30.0 bits (67), Expect = 0.56
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
++E +D E EE EEEE Q + + E+E+ E +E E
Sbjct: 429 DEESAIDDNEGFEELSPEEEERQLREFRDMEKEDREFPDEAEL 471
Score = 29.7 bits (66), Expect = 0.67
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
+++D E EE +EE ++ E EE EEEE + + R
Sbjct: 414 DDDDPKENDNEEVAGDEESAIDDNEGFEELSPEEEERQLREFR 456
Score = 29.3 bits (65), Expect = 0.89
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 102 MVSCVFWMIKPKEKEEEDEDEE---QEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
M + K + EE DEE + E +E E+EE++ E + E+E+ E D
Sbjct: 410 MSAIDDDDPKENDNEEVAGDEESAIDDNEGFEELSPEEEERQLREFRDMEKEDREFPDE 468
Score = 27.7 bits (61), Expect = 3.1
Identities = 9/45 (20%), Positives = 24/45 (53%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
E+EE+ + ++E ++++ +E + EE +EE ++ +
Sbjct: 394 EDEEEEDGQCNDEESTMSAIDDDDPKENDNEEVAGDEESAIDDNE 438
>gnl|CDD|220413 pfam09805, Nop25, Nucleolar protein 12 (25kDa). Members of this
family of proteins are part of the yeast nuclear pore
complex-associated pre-60S ribosomal subunit. The family
functions as a highly conserved exonuclease that is
required for the 5'-end maturation of 5.8S and 25S
rRNAs, demonstrating that 5'-end processing also has a
redundant pathway. Nop25 binds late pre-60S ribosomes,
accompanying them from the nucleolus to the nuclear
periphery; and there is evidence for both physical and
functional links between late 60S subunit processing and
export.
Length = 134
Score = 30.4 bits (69), Expect = 0.23
Identities = 12/47 (25%), Positives = 26/47 (55%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
K K E+E++++E+ E ++ E+ ++++ E E + EEE
Sbjct: 73 KEALKLLEEENDDEEDAETEDTEDVEDDEWEGFPEPTVTDYEEEYID 119
Score = 30.4 bits (69), Expect = 0.24
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRILI 161
K EEE++DEE E E+ E+ E+ E + E + EEE ++ +
Sbjct: 76 LKLLEEENDDEEDAETEDTEDVEDDEWEGFPEPTVTDYEEEYIDEDKYKT 125
Score = 27.7 bits (62), Expect = 1.6
Identities = 11/49 (22%), Positives = 28/49 (57%)
Query: 109 MIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+K +++ + +EE ++EE+ E E+ ++ +++E E E + E+
Sbjct: 68 QLKERKEALKLLEEENDDEEDAETEDTEDVEDDEWEGFPEPTVTDYEEE 116
Score = 26.5 bits (59), Expect = 3.9
Identities = 10/48 (20%), Positives = 28/48 (58%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRILI 161
E ++E++ E ++ E+ +++E E + + EEE +E++ + + +
Sbjct: 82 ENDDEEDAETEDTEDVEDDEWEGFPEPTVTDYEEEYIDEDKYKTTVTV 129
Score = 26.1 bits (58), Expect = 6.2
Identities = 14/43 (32%), Positives = 29/43 (67%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+++E E + +E++E + EEE +E++ E E+ E+ E++E E
Sbjct: 61 RKQELEKQLKERKEALKLLEEENDDEEDAETEDTEDVEDDEWE 103
>gnl|CDD|185594 PTZ00395, PTZ00395, Sec24-related protein; Provisional.
Length = 1560
Score = 31.2 bits (70), Expect = 0.24
Identities = 16/58 (27%), Positives = 22/58 (37%)
Query: 98 RGNPMVSCVFWMIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
GN + I +E E Q+ E+ EE E E E E E ++ EE
Sbjct: 534 GGNAATTADPNGIAKREDHPEGGTNRQKYEQSDEESVESSSSENSSENENEVTDKGEE 591
>gnl|CDD|185618 PTZ00438, PTZ00438, gamete antigen 27/25-like protein; Provisional.
Length = 374
Score = 30.8 bits (69), Expect = 0.26
Identities = 18/45 (40%), Positives = 32/45 (71%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+++EEEDED E+ EE E+ E E+E ++E+ E+++E+E + E
Sbjct: 106 QKEEEEDEDVEEIEEVEEVEVVEEEYDDDEDSEKDDEKESDAEGD 150
Score = 30.0 bits (67), Expect = 0.47
Identities = 19/45 (42%), Positives = 32/45 (71%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
KE+EE+++ EE EE EE E EE+ + +E+ E+++E+E + E D
Sbjct: 107 KEEEEDEDVEEIEEVEEVEVVEEEYDDDEDSEKDDEKESDAEGDE 151
Score = 29.6 bits (66), Expect = 0.62
Identities = 16/47 (34%), Positives = 34/47 (72%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
+E+E+ED +E +E EE + EEE ++ E+ E+++E+E + E +++ +
Sbjct: 108 EEEEDEDVEEIEEVEEVEVVEEEYDDDEDSEKDDEKESDAEGDENEL 154
Score = 29.6 bits (66), Expect = 0.78
Identities = 20/46 (43%), Positives = 32/46 (69%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
K +EE +E+EE+E+ EE EE EE E EEE +++E+ E++D +
Sbjct: 98 KNEEERGTQKEEEEDEDVEEIEEVEEVEVVEEEYDDDEDSEKDDEK 143
Score = 29.3 bits (65), Expect = 0.98
Identities = 19/45 (42%), Positives = 33/45 (73%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+E+ + E+EE E+ EE EE EE E EEE +++E+ E+++E++S
Sbjct: 101 EERGTQKEEEEDEDVEEIEEVEEVEVVEEEYDDDEDSEKDDEKES 145
>gnl|CDD|222665 pfam14303, NAM-associated, No apical meristem-associated C-terminal
domain. This domain is found in a number of different
types of plant proteins including NAM-like proteins.
Length = 147
Score = 30.0 bits (68), Expect = 0.26
Identities = 15/48 (31%), Positives = 30/48 (62%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRIL 160
K K+EE E E+++EE + E E++ E E+++ E + +E+ +I+
Sbjct: 78 KAKKEEAEKEKEKEERFMKALAEAEKERAELEKKKAEAKLMKEEKKIM 125
Score = 29.6 bits (67), Expect = 0.37
Identities = 15/44 (34%), Positives = 28/44 (63%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
K +E E+E E EE+ + E E+E+ E E+++ E + +EE++
Sbjct: 80 KKEEAEKEKEKEERFMKALAEAEKERAELEKKKAEAKLMKEEKK 123
Score = 27.7 bits (62), Expect = 1.9
Identities = 16/47 (34%), Positives = 28/47 (59%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
K KE+ D+ + ++EE E+E+E+EE+ + E E+E E E +
Sbjct: 67 KAKEKLRRDKLKAKKEEAEKEKEKEERFMKALAEAEKERAELEKKKA 113
Score = 27.3 bits (61), Expect = 2.9
Identities = 15/46 (32%), Positives = 27/46 (58%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
K K++E E E E++E + E E+E E E+++ E + +EE+
Sbjct: 78 KAKKEEAEKEKEKEERFMKALAEAEKERAELEKKKAEAKLMKEEKK 123
>gnl|CDD|149180 pfam07960, CBP4, CBP4. The CBP4 in S. cerevisiae is essential for
the expression and activity of ubiquinol-cytochrome c
reductase. This family appears to be fungal specific.
Length = 128
Score = 30.1 bits (68), Expect = 0.26
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
P EK+ + ++ + EE ++EE + +EE EE + EE +E
Sbjct: 85 PWEKKRNVREFQKTKAEEAQKEELERIREELEEARAQSEEMRKE 128
Score = 26.6 bits (59), Expect = 3.5
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 108 WMIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
W P E E + +E ++ + EE ++EE E EE EE + EE
Sbjct: 77 WKTGPIESPWEKKRNVREFQKTKAEEAQKEELERIREELEEARAQSEE 124
>gnl|CDD|237258 PRK12903, secA, preprotein translocase subunit SecA; Reviewed.
Length = 925
Score = 31.2 bits (71), Expect = 0.27
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
EE + E+++ +QE + E E +E EEE + E + E
Sbjct: 828 EMLMRPEELELINEEQKNLKQEIKLELSEIQEAEEEIQNINENKNE 873
Score = 28.9 bits (65), Expect = 1.2
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRIL 160
+ + +E + EE E EE++ ++E + E E +E EEE I
Sbjct: 821 ALRIQREEMLMRPEELELINEEQKNLKQEIKLELSEIQEAEEEIQNIN 868
Score = 28.9 bits (65), Expect = 1.4
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
+K + E+ EE E EE++ +QE + E E +E EEE
Sbjct: 819 LKALRIQREEMLMRPEELELINEEQKNLKQEIKLELSEIQEAEEE 863
Score = 28.5 bits (64), Expect = 1.6
Identities = 14/49 (28%), Positives = 25/49 (51%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRILI 161
+ EE ++ +QE + E E +E EE+ + E + E E + D + L
Sbjct: 837 ELINEEQKNLKQEIKLELSEIQEAEEEIQNINENKNEFVEFKNDPKKLN 885
Score = 26.9 bits (60), Expect = 5.5
Identities = 11/44 (25%), Positives = 22/44 (50%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
+E+ +E + EEQ+ +++ + E E +E EEE +
Sbjct: 824 IQREEMLMRPEELELINEEQKNLKQEIKLELSEIQEAEEEIQNI 867
>gnl|CDD|204414 pfam10211, Ax_dynein_light, Axonemal dynein light chain. Axonemal
dynein light chain proteins play a dynamic role in
flagellar and cilia motility. Eukaryotic cilia and
flagella are complex organelles consisting of a core
structure, the axoneme, which is composed of nine
microtubule doublets forming a cylinder that surrounds a
pair of central singlet microtubules. This
ultra-structural arrangement seems to be one of the most
stable micro-tubular assemblies known and is responsible
for the flagellar and ciliary movement of a large number
of organisms ranging from protozoan to mammals. This
light chain interacts directly with the N-terminal half
of the heavy chains.
Length = 189
Score = 30.3 bits (69), Expect = 0.29
Identities = 15/47 (31%), Positives = 28/47 (59%)
Query: 109 MIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+ + +K EE+++E ++ E E + E E+ EEEE + EE+ +E
Sbjct: 125 LEQEIKKLEEEKEELEKRVAELEAKLEAIEKREEEERQIEEKRHADE 171
Score = 27.2 bits (61), Expect = 3.4
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
E E+E + E+E+EE ++ E E + E E+ EEEE + EE
Sbjct: 124 ELEQEIKKLEEEKEELEKRVAELEAKLEAIEKREEEERQIEE 165
>gnl|CDD|215180 PLN02316, PLN02316, synthase/transferase.
Length = 1036
Score = 31.0 bits (70), Expect = 0.29
Identities = 14/51 (27%), Positives = 29/51 (56%)
Query: 108 WMIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
++++ K +E E +E+ E E Q EE+ + E+E+ E + + + E + R
Sbjct: 249 FLLEEKRRELEKLAKEEAERERQAEEQRRREEEKAAMEADRAQAKAEVEKR 299
Score = 26.8 bits (59), Expect = 7.1
Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEE--EEEEEEEEEEEEEEDSRIL 160
E+ +E+ + + Q E EE E E+E E E+ S +L
Sbjct: 38 STSTSSLSVSAVEKTSNAKEEIQVDFQHNSESAVEEVEAEDEIEVEQNQSDVL 90
>gnl|CDD|237549 PRK13897, PRK13897, type IV secretion system component VirD4;
Provisional.
Length = 606
Score = 30.9 bits (70), Expect = 0.29
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 117 EEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
+E D E EE E E EE+EE+++E+++
Sbjct: 569 QEPYDPRANNNEASEETETITVPENNEEDEEDDDEDDD 606
Score = 28.6 bits (64), Expect = 1.5
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEE 151
P ++ + E EE E E EE+EE+++E+++
Sbjct: 567 PTQEPYDPRANNNEASEETETITVPENNEEDEEDDDEDDD 606
Score = 28.2 bits (63), Expect = 2.4
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 129 EQEEEEEQEEQEEEEEEEEEEEEEEEED 156
E EE E E EE+EE+++E+D
Sbjct: 578 NNEASEETETITVPENNEEDEEDDDEDD 605
Score = 27.8 bits (62), Expect = 2.9
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 127 EEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
E EE E E EE+EE+++E+++
Sbjct: 578 NNEASEETETITVPENNEEDEEDDDEDDD 606
Score = 27.1 bits (60), Expect = 4.7
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 132 EEEEQEEQEEEEEEEEEEEEEEEED 156
EE + E EE+EE+++E++D
Sbjct: 582 SEETETITVPENNEEDEEDDDEDDD 606
Score = 27.1 bits (60), Expect = 5.5
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 115 KEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEE 152
+E D E E+ E E EE+EE+++E+++
Sbjct: 569 QEPYDPRANNNEASEETETITVPENNEEDEEDDDEDDD 606
>gnl|CDD|222800 PHA00458, PHA00458, single-stranded DNA-binding protein.
Length = 233
Score = 30.5 bits (69), Expect = 0.30
Identities = 13/39 (33%), Positives = 27/39 (69%)
Query: 118 EDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
++++E+ E + + Q+E+E +E++EEE EE+E+ D
Sbjct: 194 DEDEEDGYVASEAKARKPQDEEEWDEDDEEESEEDEDGD 232
Score = 27.5 bits (61), Expect = 3.2
Identities = 14/37 (37%), Positives = 26/37 (70%)
Query: 121 DEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
DE++E+ E + ++ Q+EEE +E++EEE EE++
Sbjct: 194 DEDEEDGYVASEAKARKPQDEEEWDEDDEEESEEDED 230
Score = 26.7 bits (59), Expect = 6.3
Identities = 13/39 (33%), Positives = 27/39 (69%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
+E++ED E + + +++EE +E++EEE EE+E+ +
Sbjct: 194 DEDEEDGYVASEAKARKPQDEEEWDEDDEEESEEDEDGD 232
Score = 26.3 bits (58), Expect = 8.5
Identities = 13/39 (33%), Positives = 26/39 (66%)
Query: 117 EEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+EDE++ E + + + EE+ +E++EEE EE+E+ +
Sbjct: 194 DEDEEDGYVASEAKARKPQDEEEWDEDDEEESEEDEDGD 232
>gnl|CDD|114172 pfam05432, BSP_II, Bone sialoprotein II (BSP-II). Bone
sialoprotein (BSP) is a major structural protein of the
bone matrix that is specifically expressed by
fully-differentiated osteoblasts. The expression of bone
sialoprotein (BSP) is normally restricted to mineralised
connective tissues of bones and teeth where it has been
associated with mineral crystal formation. However, it
has been found that ectopic expression of BSP occurs in
various lesions, including oral and extraoral
carcinomas, in which it has been associated with the
formation of microcrystalline deposits and the
metastasis of cancer cells to bone.
Length = 291
Score = 30.4 bits (68), Expect = 0.30
Identities = 24/65 (36%), Positives = 31/65 (47%), Gaps = 24/65 (36%)
Query: 115 KEEEDEDEEQEEEEEQEEEEEQEEQEE------------------------EEEEEEEEE 150
KE+E +++E+EEEEE+EEE E EE E+ EE EEE
Sbjct: 131 KEDESDEDEEEEEEEEEEEAEVEENEQGTNGTSTNSTEVDHGNGSSGGDNGEEGEEESVT 190
Query: 151 EEEEE 155
E E E
Sbjct: 191 EAEAE 195
Score = 29.3 bits (65), Expect = 0.84
Identities = 16/34 (47%), Positives = 25/34 (73%)
Query: 121 DEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
+ ++ +E E +E++EE+EEEEEEE E EE E+
Sbjct: 124 NAGKKATKEDESDEDEEEEEEEEEEEAEVEENEQ 157
Score = 28.9 bits (64), Expect = 1.1
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 126 EEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
++ +E+E E++EEEEEEEEEE E EE +
Sbjct: 126 GKKATKEDESDEDEEEEEEEEEEEAEVEENE 156
Score = 28.9 bits (64), Expect = 1.2
Identities = 16/33 (48%), Positives = 24/33 (72%)
Query: 125 EEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
++ +E+E +++E+EEEEEEEEE E EE E
Sbjct: 126 GKKATKEDESDEDEEEEEEEEEEEAEVEENEQG 158
Score = 28.5 bits (63), Expect = 1.5
Identities = 17/48 (35%), Positives = 26/48 (54%)
Query: 107 FWMIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
F + + EE+ D + EEE +EE +EE E+ + E+EE E E
Sbjct: 42 FSVQSGSDSSEENGDGDSSEEEGEEETSNEEENNEDSDGNEDEEAEAE 89
Score = 28.5 bits (63), Expect = 1.6
Identities = 16/34 (47%), Positives = 26/34 (76%)
Query: 119 DEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEE 152
+ ++ +E+E +E+EE+EE+EEEEE E EE E+
Sbjct: 124 NAGKKATKEDESDEDEEEEEEEEEEEAEVEENEQ 157
Score = 28.1 bits (62), Expect = 2.2
Identities = 17/32 (53%), Positives = 23/32 (71%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEE 145
K+ EDE E+EEE+EEEEE+E + EE E+
Sbjct: 126 GKKATKEDESDEDEEEEEEEEEEEAEVEENEQ 157
Score = 28.1 bits (62), Expect = 2.3
Identities = 17/39 (43%), Positives = 27/39 (69%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEE 150
PK+ + +E+E +++EEEE+EE+EEE E EE E+
Sbjct: 119 PKKAGNAGKKATKEDESDEDEEEEEEEEEEEAEVEENEQ 157
Score = 27.4 bits (60), Expect = 4.2
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 21/65 (32%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQE---------------------EQEEEEEEEEEE 149
K E +E++E+EE+EEEEE E EE ++ + EE EEE
Sbjct: 131 KEDESDEDEEEEEEEEEEEAEVEENEQGTNGTSTNSTEVDHGNGSSGGDNGEEGEEESVT 190
Query: 150 EEEEE 154
E E E
Sbjct: 191 EAEAE 195
Score = 26.6 bits (58), Expect = 5.8
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 118 EDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
E+ + EEE EEE EE+ E+ + E+EE E E+
Sbjct: 52 EENGDGDSSEEEGEEETSNEEENNEDSDGNEDEEAEAEN 90
Score = 26.6 bits (58), Expect = 6.3
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 119 DEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
D EE + + EEE E+E EEE E+ + E+EE
Sbjct: 49 DSSEENGDGDSSEEEGEEETSNEEENNEDSDGNEDEE 85
>gnl|CDD|220377 pfam09747, DUF2052, Coiled-coil domain containing protein
(DUF2052). This entry is of sequences of two conserved
domains separated by a region of low complexity,
spanning some 200 residues. The function is unknown.
Length = 178
Score = 30.1 bits (68), Expect = 0.31
Identities = 22/45 (48%), Positives = 29/45 (64%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
E E+ E+EE EEEE++ EEE EE+EEE + EEEEE+
Sbjct: 72 ELLEQQEEEESAEEEEEDPEEENEEEEEEYQRGPFGEEEEEDGDS 116
Score = 28.2 bits (63), Expect = 1.7
Identities = 21/44 (47%), Positives = 28/44 (63%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+E+ + E+QEEEE EEEEE E+E EEEEEE + E+
Sbjct: 66 REEARLELLEQQEEEESAEEEEEDPEEENEEEEEEYQRGPFGEE 109
Score = 27.8 bits (62), Expect = 2.1
Identities = 22/37 (59%), Positives = 27/37 (72%)
Query: 119 DEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
D +E + E EQ+EEEE E+EEE+ EEE EEEEEE
Sbjct: 65 DREEARLELLEQQEEEESAEEEEEDPEEENEEEEEEY 101
Score = 27.4 bits (61), Expect = 3.3
Identities = 19/43 (44%), Positives = 30/43 (69%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
++EEE +EE+E+ EE+ EEEE+E Q EEEEE+ + ++
Sbjct: 77 QEEEESAEEEEEDPEEENEEEEEEYQRGPFGEEEEEDGDSYDE 119
Score = 26.6 bits (59), Expect = 4.5
Identities = 18/45 (40%), Positives = 30/45 (66%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+++E+E+ +EEEE+ EEE E+EE+E + EEEEE+ +
Sbjct: 73 LLEQQEEEESAEEEEEDPEEENEEEEEEYQRGPFGEEEEEDGDSY 117
Score = 26.6 bits (59), Expect = 5.2
Identities = 21/39 (53%), Positives = 26/39 (66%)
Query: 117 EEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
E D E+ E E++EE+E EEEEE+ EEE EEEEE
Sbjct: 61 ESSLDREEARLELLEQQEEEESAEEEEEDPEEENEEEEE 99
Score = 26.6 bits (59), Expect = 5.3
Identities = 20/51 (39%), Positives = 31/51 (60%)
Query: 109 MIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
+ + + + E E +E+EE E+EEE+ +EE EEEEEE + EEE+
Sbjct: 64 LDREEARLELLEQQEEEESAEEEEEDPEEENEEEEEEYQRGPFGEEEEEDG 114
Score = 26.2 bits (58), Expect = 6.9
Identities = 19/48 (39%), Positives = 31/48 (64%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRILI 161
E++EE+E E+EEE+ +EE EE+EE+ + EEEEE+ + +
Sbjct: 75 EQQEEEESAEEEEEDPEEENEEEEEEYQRGPFGEEEEEDGDSYDELPT 122
Score = 26.2 bits (58), Expect = 7.3
Identities = 19/44 (43%), Positives = 27/44 (61%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
E+EEED +EE EEEEE+ + E+EEE+ + +E EE
Sbjct: 82 SAEEEEEDPEEENEEEEEEYQRGPFGEEEEEDGDSYDELPTPEE 125
Score = 25.8 bits (57), Expect = 9.7
Identities = 20/45 (44%), Positives = 25/45 (55%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRIL 160
EE E E++EE+E EE+EE EEE EEEEEE +
Sbjct: 66 REEARLELLEQQEEEESAEEEEEDPEEENEEEEEEYQRGPFGEEE 110
>gnl|CDD|219822 pfam08401, DUF1738, Domain of unknown function (DUF1738). This
region is found in a number of bacterial hypothetical
proteins. Some members are annotated as being similar to
replication primases, and in fact this region is often
found together with the Toprim domain (pfam01751).
Length = 123
Score = 29.9 bits (68), Expect = 0.31
Identities = 16/25 (64%), Positives = 19/25 (76%), Gaps = 2/25 (8%)
Query: 106 VFWMIKPKEKEEEDEDEEQEEEEEQ 130
V+W KP EKEEEDED E+ E EE+
Sbjct: 90 VYW--KPFEKEEEDEDGEEGEPEER 112
>gnl|CDD|235302 PRK04456, PRK04456, acetyl-CoA decarbonylase/synthase complex
subunit beta; Reviewed.
Length = 463
Score = 30.8 bits (70), Expect = 0.32
Identities = 15/16 (93%), Positives = 15/16 (93%)
Query: 140 EEEEEEEEEEEEEEEE 155
EEEEEEEEEEEEEEE
Sbjct: 404 AEEEEEEEEEEEEEEE 419
Score = 30.4 bits (69), Expect = 0.36
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 131 EEEEEQEEQEEEEEEEEEEEEE 152
EEEE+EE+EEEEEEE E
Sbjct: 404 AEEEEEEEEEEEEEEEPVAEVM 425
Score = 30.4 bits (69), Expect = 0.37
Identities = 14/20 (70%), Positives = 16/20 (80%)
Query: 137 EEQEEEEEEEEEEEEEEEED 156
E+EEEEEEEEEEEEE +
Sbjct: 404 AEEEEEEEEEEEEEEEPVAE 423
Score = 30.4 bits (69), Expect = 0.39
Identities = 15/21 (71%), Positives = 16/21 (76%)
Query: 135 EQEEQEEEEEEEEEEEEEEEE 155
EE+EEEEEEEEEEEE E
Sbjct: 403 AAEEEEEEEEEEEEEEEPVAE 423
Score = 30.4 bits (69), Expect = 0.39
Identities = 14/23 (60%), Positives = 16/23 (69%)
Query: 132 EEEEQEEQEEEEEEEEEEEEEEE 154
EE+EE+EEEEEEEEE E
Sbjct: 403 AAEEEEEEEEEEEEEEEPVAEVM 425
Score = 30.4 bits (69), Expect = 0.42
Identities = 14/23 (60%), Positives = 16/23 (69%)
Query: 131 EEEEEQEEQEEEEEEEEEEEEEE 153
EEE+EE+EEEEEEEE E
Sbjct: 403 AAEEEEEEEEEEEEEEEPVAEVM 425
Score = 30.0 bits (68), Expect = 0.46
Identities = 14/23 (60%), Positives = 16/23 (69%)
Query: 133 EEEQEEQEEEEEEEEEEEEEEEE 155
E+EE+EEEEEEEEEE E
Sbjct: 403 AAEEEEEEEEEEEEEEEPVAEVM 425
Score = 30.0 bits (68), Expect = 0.57
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 125 EEEEEQEEEEEQEEQEEEEEEEE 147
EEE+EEEEE+EE+EE E
Sbjct: 403 AAEEEEEEEEEEEEEEEPVAEVM 425
Score = 30.0 bits (68), Expect = 0.57
Identities = 15/20 (75%), Positives = 16/20 (80%)
Query: 138 EQEEEEEEEEEEEEEEEEDS 157
EEEEEEEEEEEEEEE +
Sbjct: 403 AAEEEEEEEEEEEEEEEPVA 422
Score = 29.3 bits (66), Expect = 0.94
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 128 EEQEEEEEQEEQEEEEEEEEEEE 150
+EEEEE+EE+EEEEE E
Sbjct: 403 AAEEEEEEEEEEEEEEEPVAEVM 425
Score = 29.3 bits (66), Expect = 0.94
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 126 EEEEQEEEEEQEEQEEEEEEEEE 148
EE+EEEEE+EE+EEE E
Sbjct: 403 AAEEEEEEEEEEEEEEEPVAEVM 425
Score = 29.3 bits (66), Expect = 1.00
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 115 KEEEDEDEEQEEEEEQEEEEEQEEQEEEE 143
EE+E+EE+EEEEE+E E E
Sbjct: 403 AAEEEEEEEEEEEEEEEPVAEVMMMPAPE 431
Score = 28.9 bits (65), Expect = 1.1
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 127 EEEQEEEEEQEEQEEEEEEEEEE 149
E+EEEEE+EE+EEEE E
Sbjct: 403 AAEEEEEEEEEEEEEEEPVAEVM 425
Score = 28.9 bits (65), Expect = 1.3
Identities = 14/23 (60%), Positives = 16/23 (69%)
Query: 129 EQEEEEEQEEQEEEEEEEEEEEE 151
EEEEE+EE+EEEEEE E
Sbjct: 403 AAEEEEEEEEEEEEEEEPVAEVM 425
Score = 28.5 bits (64), Expect = 1.5
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 123 EQEEEEEQEEEEEQEEQEEEEEE 145
EEEEE+EEEEE+EE+ E
Sbjct: 403 AAEEEEEEEEEEEEEEEPVAEVM 425
Score = 28.1 bits (63), Expect = 2.0
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 122 EEQEEEEEQEEEEEQEEQEEEEE 144
+EEEEE+EEEEE+EE E
Sbjct: 403 AAEEEEEEEEEEEEEEEPVAEVM 425
Score = 27.7 bits (62), Expect = 2.7
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQ 139
E+ +E+EE+EEEEE+EEE E
Sbjct: 400 ERWAAEEEEEEEEEEEEEEEPVAEVM 425
Score = 27.7 bits (62), Expect = 3.3
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEE 141
+EEE+E+EE+EEEEE E E
Sbjct: 403 AAEEEEEEEEEEEEEEEPVAEVMMMPAPE 431
Score = 27.3 bits (61), Expect = 4.0
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEE 144
E+E+EE+EEEEE+EE + E
Sbjct: 403 AAEEEEEEEEEEEEEEEPVAEVMMMPAPE 431
>gnl|CDD|173277 PRK14816, PRK14816, NADH dehydrogenase subunit B; Provisional.
Length = 182
Score = 30.3 bits (68), Expect = 0.33
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 68 EFSDN----TLCLQLVEGKPNGLLCVLDDQANWSRGNPMVSCVF 107
+F DN + +L EG N + VLDD NW R N + F
Sbjct: 5 DFIDNESLEKMVKELNEGGANVFVGVLDDLINWGRSNSLWPLTF 48
>gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional.
Length = 1486
Score = 30.7 bits (70), Expect = 0.34
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 114 EKEEEDEDEEQEEEEEQEE--EEEQEEQEEEEEEEEEEEEEEEE 155
E+ + D +E +E EEQ E EE E+QEE E E EEE +E
Sbjct: 351 ERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDE 394
Score = 28.0 bits (63), Expect = 2.7
Identities = 10/44 (22%), Positives = 18/44 (40%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
K + E+E E ++E E E E + E ++ E+
Sbjct: 547 GKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQ 590
Score = 27.6 bits (62), Expect = 3.4
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 115 KEEEDEDE-EQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRILI 161
K +DEDE EQ +EE + E E E E ++ E + I
Sbjct: 548 KNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARI 595
>gnl|CDD|224881 COG1970, MscL, Large-conductance mechanosensitive channel [Cell
envelope biogenesis, outer membrane].
Length = 130
Score = 29.6 bits (67), Expect = 0.37
Identities = 9/41 (21%), Positives = 14/41 (34%), Gaps = 8/41 (19%)
Query: 105 CVFWMIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEE 145
+F ++K K + E+EE E EE
Sbjct: 86 AIFLVVKAINKL--------RRKLEKEEPEAPAPAPPAEEV 118
>gnl|CDD|227880 COG5593, COG5593, Nucleic-acid-binding protein possibly involved in
ribosomal biogenesis [Translation, ribosomal structure
and biogenesis].
Length = 821
Score = 30.4 bits (68), Expect = 0.38
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+ +EE DE + +++ + + EE+E EEE+EEEE+
Sbjct: 741 SQESDQEEGLDEIFYSFDGEQDNSDSFAESSEEDESSEEEKEEEEN 786
Score = 30.4 bits (68), Expect = 0.42
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 120 EDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
D EQ+ + E E++E EEE+EEEE +E + ++
Sbjct: 757 FDGEQDNSDSFAESSEEDESSEEEKEEEENKEVSAKRAK 795
Score = 28.9 bits (64), Expect = 1.6
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 15/63 (23%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEE---------------QEEEEEEEEEEEEEEEE 155
+PK +DED + E +E ++EE +E E EE+E EEE+EEE
Sbjct: 725 EPKLDAIDDEDAKSEGSQESDQEEGLDEIFYSFDGEQDNSDSFAESSEEDESSEEEKEEE 784
Query: 156 DSR 158
+++
Sbjct: 785 ENK 787
>gnl|CDD|234338 TIGR03742, PRTRC_F, PRTRC system protein F. A novel genetic system
characterized by seven (usually) major proteins,
including a ParB homolog and a ThiF homolog, is commonly
found on plasmids or in bacterial chromosomal regions
near phage, plasmid, or transposon markers. It is most
common among the beta Proteobacteria. We designate the
system PRTRC, or ParB-Related,ThiF-Related Cassette.
This protein family is designated protein F. It is the
most divergent of the families.
Length = 342
Score = 30.1 bits (68), Expect = 0.39
Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 7/50 (14%)
Query: 102 MVSCVFWMIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEE 151
S ++W E E ++EE EE E++E++E E+ E+
Sbjct: 157 HFSYIYW-------EGETDEEEALEELCDEDDEDREAYLPSVVEQALLED 199
>gnl|CDD|237001 PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase
subunit E2; Reviewed.
Length = 411
Score = 30.1 bits (69), Expect = 0.40
Identities = 8/43 (18%), Positives = 9/43 (20%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
EEE E E E E E +
Sbjct: 77 EEEGEAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAA 119
>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional.
Length = 1560
Score = 30.5 bits (69), Expect = 0.40
Identities = 8/46 (17%), Positives = 16/46 (34%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
KE ++ E + E E + E ++E E + +
Sbjct: 882 KENKDSKEGDADAEVAEVDAAPGGAVDHEPPVAKQEGNAEGGDGAA 927
>gnl|CDD|129661 TIGR00570, cdk7, CDK-activating kinase assembly factor MAT1. All
proteins in this family for which functions are known
are cyclin dependent protein kinases that are components
of TFIIH, a complex that is involved in nucleotide
excision repair and transcription initiation. Also known
as MAT1 (menage a trois 1). This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 309
Score = 30.2 bits (68), Expect = 0.41
Identities = 13/41 (31%), Positives = 27/41 (65%)
Query: 115 KEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+E+E+ +E E E+E+EE+ Q+EEEE++ + + ++
Sbjct: 142 REQEELEEALEFEKEEEEQRRLLLQKEEEEQQMNKRKNKQA 182
Score = 29.4 bits (66), Expect = 0.67
Identities = 15/42 (35%), Positives = 28/42 (66%)
Query: 120 EDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRILI 161
E EE EE E E+EEE++ + ++EEEE++ + ++ + L+
Sbjct: 143 EQEELEEALEFEKEEEEQRRLLLQKEEEEQQMNKRKNKQALL 184
Score = 26.3 bits (58), Expect = 9.4
Identities = 12/45 (26%), Positives = 27/45 (60%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
K ++EE E+ + E+EE+E+ ++EEEE++ + + ++
Sbjct: 138 EKSTREQEELEEALEFEKEEEEQRRLLLQKEEEEQQMNKRKNKQA 182
>gnl|CDD|218576 pfam05395, DARPP-32, Protein phosphatase inhibitor 1/DARPP-32.
This family consists of several mammalian protein
phosphatase inhibitor 1 (IPP-1) and dopamine- and
cAMP-regulated neuronal phosphoprotein (DARPP-32)
proteins. Protein phosphatase inhibitor-1 is involved in
signal transduction and is an endogenous inhibitor of
protein phosphatase-1. It has been demonstrated that
DARPP-32, if phosphorylated, can inhibit
protein-phosphatase-1. DARPP-32 has a key role in many
neurotransmitter pathways throughout the brain and has
been shown to be involved in controlling receptors, ion
channels and other physiological factors including the
brain's response to drugs of abuse, such as cocaine,
opiates and nicotine. DARPP-32 is reciprocally regulated
by the two neurotransmitters that are most often
implicated in schizophrenia - dopamine and glutamate.
Dopamine activates DARPP-32 through the D1 receptor
pathway and disables DARPP-32 through the D2 receptor.
Glutamate, acting through the N-methyl-d-aspartate
receptor, renders DARPP-32 inactive. A mutant form of
DARPP-32 has been linked with gastric cancers.
Length = 170
Score = 29.9 bits (67), Expect = 0.41
Identities = 11/45 (24%), Positives = 21/45 (46%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
EE++ E+E+E + +E E E E ++ EE ++
Sbjct: 95 GSLEENQASEEEDELDSPDELGYPTGETESTEAQDSEEPGSCPTQ 139
Score = 27.2 bits (60), Expect = 2.9
Identities = 10/45 (22%), Positives = 17/45 (37%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+ E+ +EE+E +E E E E ++ EE
Sbjct: 93 SQGSLEENQASEEEDELDSPDELGYPTGETESTEAQDSEEPGSCP 137
Score = 27.2 bits (60), Expect = 3.4
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
EEEDE + +E E E E ++ EE ++ + +
Sbjct: 104 EEEDELDSPDELGYPTGETESTEAQDSEEPGSCPTQDAQSE 144
>gnl|CDD|217502 pfam03343, SART-1, SART-1 family. SART-1 is a protein involved in
cell cycle arrest and pre-mRNA splicing. It has been
shown to be a component of U4/U6 x U5 tri-snRNP complex
in human, Schizosaccharomyces pombe and Saccharomyces
cerevisiae. SART-1 is a known tumour antigen in a range
of cancers recognised by T cells.
Length = 603
Score = 30.5 bits (69), Expect = 0.42
Identities = 16/50 (32%), Positives = 28/50 (56%)
Query: 106 VFWMIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
V + +E +E++EDE+ + + E + EE+EEE++E EEE
Sbjct: 419 VEEISDAEEDDEDEEDEDGDGDVEMSAVDNDEEKEEEDKEAIPSTILEEE 468
Score = 27.8 bits (62), Expect = 3.0
Identities = 16/48 (33%), Positives = 27/48 (56%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
K + EE + EE +E+EE E+ + E + +EE+EEE++E
Sbjct: 415 KDESVEEISDAEEDDEDEEDEDGDGDVEMSAVDNDEEKEEEDKEAIPS 462
Score = 27.4 bits (61), Expect = 3.5
Identities = 16/51 (31%), Positives = 30/51 (58%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRIL 160
+E D +E+ E+EE+++ + + E + +EE+EEE++E S IL
Sbjct: 415 KDESVEEISDAEEDDEDEEDEDGDGDVEMSAVDNDEEKEEEDKEAIPSTIL 465
Score = 27.0 bits (60), Expect = 5.1
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 109 MIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+ + + EE+DEDEE E+ + E + EE+EEE++E +
Sbjct: 419 VEEISDAEEDDEDEEDEDGDGDVEMSAVDNDEEKEEEDKEAIPSTILEE 467
Score = 27.0 bits (60), Expect = 5.9
Identities = 17/47 (36%), Positives = 30/47 (63%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
KP+ K+E E+ EE++++EE+E + + E + +EE+EEED
Sbjct: 411 KPENKDESVEEISDAEEDDEDEEDEDGDGDVEMSAVDNDEEKEEEDK 457
Score = 26.3 bits (58), Expect = 9.2
Identities = 13/51 (25%), Positives = 29/51 (56%)
Query: 109 MIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
I E+++EDE++E + + + + +E++EEE++E EE+ +
Sbjct: 421 EISDAEEDDEDEEDEDGDGDVEMSAVDNDEEKEEEDKEAIPSTILEEEPTV 471
Score = 26.3 bits (58), Expect = 9.4
Identities = 12/46 (26%), Positives = 31/46 (67%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+ K++ E+ + +E++E++E+E+ + E + +EE+EEE+++
Sbjct: 413 ENKDESVEEISDAEEDDEDEEDEDGDGDVEMSAVDNDEEKEEEDKE 458
>gnl|CDD|222636 pfam14265, DUF4355, Domain of unknown function (DUF4355). This
family of proteins is found in bacteria and viruses.
Proteins in this family are typically between 180 and
214 amino acids in length.
Length = 125
Score = 29.1 bits (66), Expect = 0.44
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
EK++E++ E E+ + EE+ E + E+ E+E EE E E
Sbjct: 25 EKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELEAELA 66
Score = 27.6 bits (62), Expect = 1.5
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 108 WMIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
W K +EK+ E E + EE+ E E ++ ++E EE E E E
Sbjct: 24 WEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELEAELARRE 69
Score = 27.6 bits (62), Expect = 1.6
Identities = 16/46 (34%), Positives = 28/46 (60%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
K K K E+ ++E++ E E+ + +E+ E E E+ E+E EE E +
Sbjct: 19 KEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELEAE 64
Score = 26.8 bits (60), Expect = 3.6
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRIL 160
+ K+ E E + EE+ + E E+ E++ EE E E E + E ++L
Sbjct: 29 EEKKSEAEKLAKMSAEEKAEYELEKLEKELEELEAELARRELKAEAKKML 78
>gnl|CDD|218954 pfam06246, Isy1, Isy1-like splicing family. Isy1 protein is
important in the optimisation of splicing.
Length = 253
Score = 30.0 bits (68), Expect = 0.44
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 117 EEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
++ED E E + E+E E+ EE +E ++E+ + EED R
Sbjct: 170 RDEEDGVLLEYEAEREKELIEKLVEEWKEIQDEDLQAEEDER 211
Score = 27.7 bits (62), Expect = 3.1
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 119 DEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
DEE E E E E+E E+ EE +E ++E+ +
Sbjct: 169 YRDEEDGVLLEYEAEREKELIEKLVEEWKEIQDEDLQAE 207
Score = 27.3 bits (61), Expect = 3.6
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRILI 161
E E E E E E+ E+ +E + E+ + EE+E EE+ +D +
Sbjct: 179 EYEAEREKELIEKLVEEWKEIQDEDLQAEEDEREEDIYIPLDDDAEFV 226
Score = 26.9 bits (60), Expect = 4.4
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 109 MIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
++ E E E E E+ EE +E ++E + EE+E EE+ +++
Sbjct: 176 VLLEYEAEREKELIEKLVEEWKEIQDEDLQAEEDEREEDIYIPLDDD 222
Score = 26.5 bits (59), Expect = 7.4
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 116 EEEDED-EEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRILI 161
+EED E E E E+E E+ E+ +E ++E+ + EE+E + I I
Sbjct: 171 DEEDGVLLEYEAEREKELIEKLVEEWKEIQDEDLQAEEDEREEDIYI 217
>gnl|CDD|225962 COG3428, COG3428, Predicted membrane protein [Function unknown].
Length = 494
Score = 30.1 bits (68), Expect = 0.45
Identities = 8/36 (22%), Positives = 12/36 (33%)
Query: 122 EEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
E E ++ + E + EEE E S
Sbjct: 137 ELAALVREARVKKLDALELAEADTPEEEVAEVLARS 172
Score = 28.9 bits (65), Expect = 1.1
Identities = 13/50 (26%), Positives = 14/50 (28%), Gaps = 8/50 (16%)
Query: 118 EDEDEEQEEEEEQEEEEEQEEQ--------EEEEEEEEEEEEEEEEDSRI 159
E E E E E E E E E + EEE E
Sbjct: 124 EAEAELVEREIAFELAALVREARVKKLDALELAEADTPEEEVAEVLARSQ 173
Score = 27.0 bits (60), Expect = 5.0
Identities = 7/40 (17%), Positives = 12/40 (30%)
Query: 115 KEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
E E ++ E + + EEE E +
Sbjct: 136 FELAALVREARVKKLDALELAEADTPEEEVAEVLARSQSS 175
>gnl|CDD|237192 PRK12758, PRK12758, DNA topoisomerase IV subunit A; Provisional.
Length = 869
Score = 30.4 bits (69), Expect = 0.46
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 121 DEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRIL 160
+ EE E+E EE EE + E+ + E++ ++E+ L
Sbjct: 829 EPLPYEEPEEETAEEPEEVDPEDVKSEDDIDDEDTGQLGL 868
Score = 28.8 bits (65), Expect = 1.3
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEE 148
EE E+E EE EE + E+ + E + ++E+ +
Sbjct: 831 LPYEEPEEETAEEPEEVDPEDVKSEDDIDDEDTGQ 865
Score = 28.4 bits (64), Expect = 1.8
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 115 KEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
E E E+ EEE EE EE + ++ + E++ ++E+ +
Sbjct: 826 NELEPLPYEEPEEETAEEPEEVDPEDVKSEDDIDDEDTGQ 865
Score = 28.0 bits (63), Expect = 2.7
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
K + + E EE EEE +E +E + E+ + E++ ++ED+
Sbjct: 818 TTYKVKTINELEPLPYEEPEEETAEEPEEVDPEDVKSEDDIDDEDT 863
Score = 27.7 bits (62), Expect = 3.1
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 117 EEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
E E EE EE+ EE +E E+ + E++ ++E+
Sbjct: 826 NELEPLPYEEPEEETAEEPEEVDPEDVKSEDDIDDEDTGQ 865
Score = 26.9 bits (60), Expect = 5.4
Identities = 13/45 (28%), Positives = 25/45 (55%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
K K E + +E EEE EE E+ + E+ + E++ ++E+ +
Sbjct: 821 KVKTINELEPLPYEEPEEETAEEPEEVDPEDVKSEDDIDDEDTGQ 865
Score = 26.9 bits (60), Expect = 6.0
Identities = 10/38 (26%), Positives = 22/38 (57%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEE 147
++P EE +E+ +E EE E+ + E+ ++E+ +
Sbjct: 828 LEPLPYEEPEEETAEEPEEVDPEDVKSEDDIDDEDTGQ 865
Score = 26.9 bits (60), Expect = 6.3
Identities = 26/116 (22%), Positives = 39/116 (33%), Gaps = 29/116 (25%)
Query: 66 HIEFSDNTLCLQLVEGKPNGLLCVLDDQANWSRGNPMVSCVFWMIKPKEKEEEDEDEEQ- 124
IE +D + E + L + D P + VF KE+ + D E+
Sbjct: 752 LIENTDKKFNF-ISEHPGSKLELLSTDYY------PRIEIVFGKGDGKERPNLEIDLEEF 804
Query: 125 ---------------------EEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
E E EE +EE EE EE + E+ + E+D
Sbjct: 805 IAVKGIKAKGNRLTTYKVKTINELEPLPYEEPEEETAEEPEEVDPEDVKSEDDIDD 860
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 30.1 bits (69), Expect = 0.46
Identities = 16/44 (36%), Positives = 29/44 (65%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
K E E E+E E++++E E+++++ E++EEE EE EE+
Sbjct: 99 DRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQ 142
Score = 30.1 bits (69), Expect = 0.46
Identities = 18/45 (40%), Positives = 32/45 (71%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
+++ E ++ +EE E++E+E EQ++QE E++EEE EE EE+
Sbjct: 99 DRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQE 143
Score = 29.7 bits (68), Expect = 0.68
Identities = 18/41 (43%), Positives = 31/41 (75%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
+++EEE E +E+E E++Q+E E++EE+ EE EE+ +E E
Sbjct: 106 EKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELER 146
Score = 29.4 bits (67), Expect = 0.91
Identities = 16/41 (39%), Positives = 31/41 (75%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
EK EE+ +++++E E++++E E++E+E EE EE+ +E E
Sbjct: 106 EKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELER 146
Score = 29.0 bits (66), Expect = 1.1
Identities = 18/46 (39%), Positives = 34/46 (73%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
++EE+ D + E E++EEE E++E+E E++++E E++EEE + I
Sbjct: 92 LQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELI 137
Score = 28.2 bits (64), Expect = 2.0
Identities = 16/41 (39%), Positives = 31/41 (75%)
Query: 115 KEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
++ E+E E++E+E EQ+++E ++++EE EE EE+ +E E
Sbjct: 106 EKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELER 146
Score = 27.8 bits (63), Expect = 2.6
Identities = 19/47 (40%), Positives = 33/47 (70%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
K + E +EE E++E++ E+++QE +++EEE EE EE+ +E RI
Sbjct: 101 KLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERI 147
Score = 27.4 bits (62), Expect = 4.0
Identities = 16/45 (35%), Positives = 32/45 (71%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
+ KE+ + + E E+ EE+ E++E+E +++++E E++EEE EE
Sbjct: 91 LLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEE 135
Score = 26.7 bits (60), Expect = 7.5
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 115 KEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+E +E ++ E+ Q+EE + E E+ EEE E++E+E
Sbjct: 78 RERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKE 118
>gnl|CDD|240413 PTZ00423, PTZ00423, glideosome-associated protein 45; Provisional.
Length = 193
Score = 29.7 bits (66), Expect = 0.47
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 118 EDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
+ E EE E++ ++ EE E+Q EE E+EEE EE++ I
Sbjct: 28 KKEVEEIPEQKPEDIVEELEDQPEEPPEQEEENEEQKPKEEI 69
Score = 28.9 bits (64), Expect = 0.96
Identities = 18/43 (41%), Positives = 30/43 (69%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+KE E+ E++ E+ +E E++ EE E+EEE EE++ +EE D
Sbjct: 28 KKEVEEIPEQKPEDIVEELEDQPEEPPEQEEENEEQKPKEEID 70
Score = 28.2 bits (62), Expect = 1.5
Identities = 20/45 (44%), Positives = 31/45 (68%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+ K K+E +E EQ+ E+ EE E+Q E+ E+EEE EE++ +EE
Sbjct: 24 REKLKKEVEEIPEQKPEDIVEELEDQPEEPPEQEEENEEQKPKEE 68
Score = 28.2 bits (62), Expect = 1.8
Identities = 19/44 (43%), Positives = 27/44 (61%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
K KE + D DE E E+ ++E EE EQ+ E+ EE E++ EE
Sbjct: 9 KAKEPKRRDIDELAEREKLKKEVEEIPEQKPEDIVEELEDQPEE 52
Score = 27.4 bits (60), Expect = 3.3
Identities = 15/44 (34%), Positives = 30/44 (68%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+EK +++ +E E++ E EE +++ EE E+EEE EE++ ++
Sbjct: 24 REKLKKEVEEIPEQKPEDIVEELEDQPEEPPEQEEENEEQKPKE 67
Score = 25.8 bits (56), Expect = 8.9
Identities = 17/46 (36%), Positives = 31/46 (67%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
KP++ EE ED+ +E E++EE EEQ+ +EE + +E + +E++
Sbjct: 38 KPEDIVEELEDQPEEPPEQEEENEEQKPKEEIDYPIQENKSFDEKN 83
>gnl|CDD|133433 cd05297, GH4_alpha_glucosidase_galactosidase, Glycoside Hydrolases
Family 4; Alpha-glucosidases and alpha-galactosidases.
Glucosidases cleave glycosidic bonds to release glucose
from oligosaccharides. Alpha-glucosidases and
alpha-galactosidases release alpha-D-glucose and
alpha-D-galactose, respectively, via the hydrolysis of
alpha-glycopyranoside bonds. Some bacteria
simultaneously translocate and phosphorylate
disaccharides via the phosphoenolpyruvate-dependent
phosphotransferase system (PEP-PTS). After
translocation, these phospho-disaccharides may be
hydrolyzed by the GH4 glycoside hydrolases such as the
alpha-glucosidases. Other organsisms (such as archaea
and Thermotoga maritima) lack the PEP-PTS system, but
have several enzymes normally associated with the
PEP-PTS operon. Alpha-glucosidases and
alpha-galactosidases are part of the NAD(P)-binding
Rossmann fold superfamily, which includes a wide variety
of protein families including the NAD(P)-binding domains
of alcohol dehydrogenases, tyrosine-dependent
oxidoreductases, glyceraldehyde-3-phosphate
dehydrogenases, formate/glycerate dehydrogenases,
siroheme synthases, 6-phosphogluconate dehydrogenases,
aminoacid dehydrogenases, repressor rex, and NAD-binding
potassium channel domains, among others.
Length = 423
Score = 30.2 bits (69), Expect = 0.48
Identities = 14/48 (29%), Positives = 22/48 (45%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
K E +EDE +EEQ E +E + E ++EE + + S
Sbjct: 263 KKIWYGEFNEDEYGGRDEEQGWEWYEERLKLILAEIDKEELDPVKRSG 310
Score = 27.9 bits (63), Expect = 2.3
Identities = 12/51 (23%), Positives = 20/51 (39%)
Query: 106 VFWMIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
V K +K E E E EE+ + +E + E ++EE +
Sbjct: 255 VPHYRKETKKIWYGEFNEDEYGGRDEEQGWEWYEERLKLILAEIDKEELDP 305
Score = 27.9 bits (63), Expect = 2.4
Identities = 12/47 (25%), Positives = 20/47 (42%)
Query: 108 WMIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
W + E E DEEQ E +E + + ++EE + + E
Sbjct: 266 WYGEFNEDEYGGRDEEQGWEWYEERLKLILAEIDKEELDPVKRSGEY 312
>gnl|CDD|233044 TIGR00600, rad2, DNA excision repair protein (rad2). All proteins
in this family for which functions are known are flap
endonucleases that generate the 3' incision next to DNA
damage as part of nucleotide excision repair. This
family is related to many other flap endonuclease
families including the fen1 family. This family is based
on the phylogenomic analysis of JA Eisen (1999, Ph.D.
Thesis, Stanford University) [DNA metabolism, DNA
replication, recombination, and repair].
Length = 1034
Score = 30.3 bits (68), Expect = 0.48
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
E EE E++ E E +E E +E EE+ EEE+D
Sbjct: 682 DESEENAENKVASIEGEHRKEIEDLLFDESEEDNIVGMIEEEKD 725
Score = 29.5 bits (66), Expect = 0.76
Identities = 11/46 (23%), Positives = 20/46 (43%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+ +E + E E ++E E+ E EE+ EEE++
Sbjct: 680 PTDESEENAENKVASIEGEHRKEIEDLLFDESEEDNIVGMIEEEKD 725
Score = 29.1 bits (65), Expect = 1.1
Identities = 13/54 (24%), Positives = 19/54 (35%), Gaps = 10/54 (18%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEE----------EEEEEEEEEEEED 156
E +E ED +E EE EE+++ + EE E E
Sbjct: 697 GEHRKEIEDLLFDESEEDNIVGMIEEEKDADDFKNEWQDISLEELEALEANLLA 750
Score = 26.8 bits (59), Expect = 7.0
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
E EE++ EEE++ ++ + + + EE E E E
Sbjct: 710 ESEEDNIVGMIEEEKDADDFKNEWQDISLEELEALEANLLAE 751
>gnl|CDD|221122 pfam11490, DNA_pol3_alph_N, DNA polymerase III polC-type
N-terminus. This is an N-terminal domain of DNA
polymerase III polC subunit A that is found only in
Firmicutes. DNA polymerase polC-type III enzyme
functions as the 'replicase' in low G + C Gram-positive
bacteria. Purine asymmetry is a characteristic of
organisms with a heterodimeric DNA polymerase III
alpha-subunit constituted by polC which probably plays a
direct role in the maintenance of strand-biased gene
distribution; since, among prokaryotic genomes, the
distribution of genes on the leading and lagging strands
of the replication fork is known to be biased. The
domain is associated with DNA_pol3_alpha pfam07733.
Length = 180
Score = 29.6 bits (67), Expect = 0.48
Identities = 19/48 (39%), Positives = 30/48 (62%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
I + E+E +EE EE EEQ+EEEE + EE E +++E E+++
Sbjct: 131 IDVEVDEDESSEEEIEEFEEQKEEEEAKLAEEALEALKKKEAEKKKKE 178
>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y. Members of this family are
RNase Y, an endoribonuclease. The member from Bacillus
subtilis, YmdA, has been shown to be involved in
turnover of yitJ riboswitch [Transcription, Degradation
of RNA].
Length = 514
Score = 29.9 bits (68), Expect = 0.51
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
+KEE E +E+E +++ +E+EE+ EE E+ EE E
Sbjct: 100 DKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELER 140
Score = 28.7 bits (65), Expect = 1.3
Identities = 14/45 (31%), Positives = 28/45 (62%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
+++ E D+++E E++E+E +E+ +E+EEE EE E+
Sbjct: 93 DRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREE 137
Score = 28.4 bits (64), Expect = 1.8
Identities = 15/40 (37%), Positives = 28/40 (70%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
++++E+ E++E+E +E+ +E+EEE EE E+ EE E
Sbjct: 100 DKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELE 139
Score = 28.0 bits (63), Expect = 2.3
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 113 KEKEEEDEDEEQEEEEEQE-EEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
++ E D+ EE E++E+E +E+ E+EEE EE E+ EE RI
Sbjct: 94 RKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELERI 141
Score = 27.2 bits (61), Expect = 5.0
Identities = 15/43 (34%), Positives = 26/43 (60%)
Query: 115 KEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
++E+ E++E+E +E+ E++EE EE E+ EE E S
Sbjct: 100 DKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELERIS 142
Score = 26.8 bits (60), Expect = 6.4
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 115 KEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
+ EE D + E +++EE E++E+E +E+ +E+EEE + I
Sbjct: 87 QREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELI 131
>gnl|CDD|221931 pfam13136, DUF3984, Protein of unknown function (DUF3984). This
family of proteins is functionally uncharacterized. This
family of proteins is found in eukaryotes. Proteins in
this family are typically between 393 and 442 amino
acids in length.
Length = 301
Score = 29.7 bits (67), Expect = 0.53
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 119 DEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEE 152
DED E +E E E E+E +E E
Sbjct: 239 DEDIRAEMASIDDESFSSLSDSESESEDEIDEAE 272
Score = 27.4 bits (61), Expect = 3.2
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 121 DEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
DE+ E ++E + E E E+E +E E
Sbjct: 239 DEDIRAEMASIDDESFSSLSDSESESEDEIDEAE 272
Score = 26.6 bits (59), Expect = 6.5
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 122 EEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+E E ++E + E E E+E +E E
Sbjct: 239 DEDIRAEMASIDDESFSSLSDSESESEDEIDEAE 272
>gnl|CDD|220438 pfam09845, DUF2072, Zn-ribbon containing protein (DUF2072). This
archaeal protein has no known function.
Length = 121
Score = 29.0 bits (65), Expect = 0.53
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 107 FWMIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRIL 160
F ++ +++ + D EE + EE E E ++E E +++ E+ EE E E RIL
Sbjct: 30 FLYVRERKRPKPDVPEE-KPVEEIERETDEELLEVKQDREQGEEGERIESVRIL 82
>gnl|CDD|227509 COG5182, CUS1, Splicing factor 3b, subunit 2 [RNA processing and
modification].
Length = 429
Score = 30.0 bits (67), Expect = 0.54
Identities = 14/59 (23%), Positives = 24/59 (40%)
Query: 101 PMVSCVFWMIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
P+ V+ P E E + E E + E +E +EE+ E E+ + R+
Sbjct: 328 PLEGDVYGYQPPGWHEPLFEVGPETAEGELLQFEAEEIYNDEEQYTRPVYENEDFEERV 386
>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein. This family
consists of several Borrelia P83/P100 antigen proteins.
Length = 489
Score = 30.0 bits (67), Expect = 0.55
Identities = 11/47 (23%), Positives = 27/47 (57%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
I+ + E + DEE + ++ + + ++E + E+E E++E E ++
Sbjct: 283 IEKAQIEIKKNDEEALKAKDHKAFDLKQESKASEKEAEDKELEAQKK 329
Score = 27.3 bits (60), Expect = 4.6
Identities = 12/46 (26%), Positives = 26/46 (56%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
KP + ED++ E +++E E+ Q E ++ +EE + ++ + D
Sbjct: 262 KPADTSSPKEDKQVAENQKREIEKAQIEIKKNDEEALKAKDHKAFD 307
Score = 27.3 bits (60), Expect = 4.7
Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 13/60 (21%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQ-------------EEEEEEEEEEEEEEEEDSR 158
PKE ++ E++++E E+ Q E ++ +E+ +E + E+E E++E E +
Sbjct: 269 PKEDKQVAENQKREIEKAQIEIKKNDEEALKAKDHKAFDLKQESKASEKEAEDKELEAQK 328
Score = 26.5 bits (58), Expect = 7.0
Identities = 12/49 (24%), Positives = 26/49 (53%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
+K + K E E E++E E +++ E E+ ++ + + E + ED+
Sbjct: 308 LKQESKASEKEAEDKELEAQKKREPVAEDLQKTKPQVEAQPTSLNEDAI 356
Score = 26.5 bits (58), Expect = 8.9
Identities = 9/41 (21%), Positives = 24/41 (58%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
K EE + ++ + + ++E + E++ E++E E +++ E
Sbjct: 292 KNDEEALKAKDHKAFDLKQESKASEKEAEDKELEAQKKREP 332
>gnl|CDD|113290 pfam04514, BTV_NS2, Bluetongue virus non-structural protein NS2.
This family includes NS2 proteins from other members of
the Orbivirus genus. NS2 is a non-specific
single-stranded RNA-binding protein that forms large
homomultimers and accumulates in viral inclusion bodies
of infected cells. Three RNA binding regions have been
identified in Bluetongue virus serotype 17 at residues
2-11, 153-166 and 274-286. NS2 multimers also possess
nucleotidyl phosphatase activity. The precise function
of NS2 is not known, but it may be involved in the
transport and condensation of viral mRNAs.
Length = 363
Score = 29.8 bits (67), Expect = 0.55
Identities = 13/42 (30%), Positives = 25/42 (59%)
Query: 118 EDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
E+ + +E+E EE E++ +E+E E+ E+ E + +S I
Sbjct: 236 EERRRDLRKEQELEENVERDSDDEDEHGEDSEDGETKPESYI 277
Score = 29.5 bits (66), Expect = 0.77
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
EE D +E+E E+ E + ++++E E+ E+ E + E
Sbjct: 236 EERRRDLRKEQELEENVERDSDDEDEHGEDSEDGETKPE 274
Score = 29.5 bits (66), Expect = 0.77
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEE 152
E+ + E QE EE E + + E++ E+ E+ E + E
Sbjct: 237 ERRRDLRKE-QELEENVERDSDDEDEHGEDSEDGETKPE 274
Score = 29.5 bits (66), Expect = 0.79
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+ E E EE + + +++E EE E + ++E+E EDS
Sbjct: 222 RRLAELVEMINWNLEERRRDLRKEQELEENVERDSDDEDEHGEDS 266
Score = 28.7 bits (64), Expect = 1.4
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 109 MIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
MI +E + +++E EE E + +E E E+ E+ E + E
Sbjct: 230 MINWNLEERRRDLRKEQELEENVERDSDDEDEHGEDSEDGETKPE 274
Score = 28.7 bits (64), Expect = 1.4
Identities = 11/42 (26%), Positives = 25/42 (59%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
E + +E + + +++E EE E++ ++E+E E+ E+ E
Sbjct: 229 EMINWNLEERRRDLRKEQELEENVERDSDDEDEHGEDSEDGE 270
Score = 28.3 bits (63), Expect = 1.8
Identities = 9/42 (21%), Positives = 23/42 (54%)
Query: 108 WMIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEE 149
W ++ + ++ E E +E E ++E++ ++ E+ E + E
Sbjct: 233 WNLEERRRDLRKEQELEENVERDSDDEDEHGEDSEDGETKPE 274
Score = 27.2 bits (60), Expect = 4.7
Identities = 11/44 (25%), Positives = 21/44 (47%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
E+ + E E+ + ++EQE EE E + ++E+E
Sbjct: 221 ERRLAELVEMINWNLEERRRDLRKEQELEENVERDSDDEDEHGE 264
>gnl|CDD|218336 pfam04935, SURF6, Surfeit locus protein 6. The surfeit locus
protein SURF-6 is shown to be a component of the
nucleolar matrix and has a strong binding capacity for
nucleic acids.
Length = 206
Score = 29.6 bits (67), Expect = 0.57
Identities = 8/51 (15%), Positives = 31/51 (60%)
Query: 109 MIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
+++ + ++ E ++++ ++ +++E ++ E EE + EE + +++ + I
Sbjct: 7 LLEQRRRKREQRKARKKQKRKEAKKKEDAQKSEAEEVKNEENKSKKKAAPI 57
Score = 29.2 bits (66), Expect = 0.84
Identities = 9/49 (18%), Positives = 29/49 (59%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
+ +++E+ ++Q+ +E +++E+ Q+ + EE + EE + +++
Sbjct: 11 RRRKREQRKARKKQKRKEAKKKEDAQKSEAEEVKNEENKSKKKAAPIEN 59
Score = 27.7 bits (62), Expect = 2.8
Identities = 10/45 (22%), Positives = 26/45 (57%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+ K ++++ E +++E+ Q+ E E+ + EE + +++ E E
Sbjct: 17 QRKARKKQKRKEAKKKEDAQKSEAEEVKNEENKSKKKAAPIENAE 61
>gnl|CDD|218421 pfam05086, Dicty_REP, Dictyostelium (Slime Mold) REP protein. This
family consists of REP proteins from Dictyostelium
(Slime molds). REP protein is likely involved in
transcription regulation and control of DNA replication,
specifically amplification of plasmid at low copy
numbers. The formation of homomultimers may be required
for their regulatory activity.
Length = 910
Score = 30.2 bits (68), Expect = 0.58
Identities = 11/25 (44%), Positives = 23/25 (92%)
Query: 118 EDEDEEQEEEEEQEEEEEQEEQEEE 142
E+ED++ +E+E+Q+E+E+++E E+E
Sbjct: 886 ENEDDDADEDEDQDEDEDEDEDEDE 910
Score = 29.4 bits (66), Expect = 0.86
Identities = 10/23 (43%), Positives = 21/23 (91%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQ 136
E ++ DEDE+Q+E+E+++E+E++
Sbjct: 888 EDDDADEDEDQDEDEDEDEDEDE 910
Score = 29.4 bits (66), Expect = 1.00
Identities = 9/23 (39%), Positives = 19/23 (82%)
Query: 117 EEDEDEEQEEEEEQEEEEEQEEQ 139
E+D+ +E E+++E E+E+E E++
Sbjct: 888 EDDDADEDEDQDEDEDEDEDEDE 910
Score = 29.0 bits (65), Expect = 1.1
Identities = 12/25 (48%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
Query: 114 EKEEEDEDE-EQEEEEEQEEEEEQE 137
E E++D DE E ++E+E E+E+E E
Sbjct: 886 ENEDDDADEDEDQDEDEDEDEDEDE 910
Score = 28.3 bits (63), Expect = 2.2
Identities = 9/25 (36%), Positives = 22/25 (88%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQE 140
E ED+D +++E+++++E+E+++E E
Sbjct: 886 ENEDDDADEDEDQDEDEDEDEDEDE 910
Score = 27.9 bits (62), Expect = 2.7
Identities = 10/26 (38%), Positives = 22/26 (84%)
Query: 124 QEEEEEQEEEEEQEEQEEEEEEEEEE 149
QE E++ +E+E ++++E+E+E+E+E
Sbjct: 885 QENEDDDADEDEDQDEDEDEDEDEDE 910
Score = 27.9 bits (62), Expect = 2.8
Identities = 12/29 (41%), Positives = 23/29 (79%)
Query: 123 EQEEEEEQEEEEEQEEQEEEEEEEEEEEE 151
Q +E E ++ +E E+Q+E+E+E+E+E+E
Sbjct: 882 SQFQENEDDDADEDEDQDEDEDEDEDEDE 910
Score = 27.5 bits (61), Expect = 4.5
Identities = 12/34 (35%), Positives = 26/34 (76%)
Query: 122 EEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
EE + QE E++ +++E+++E+E+E+E+E+E
Sbjct: 877 EEYLISQFQENEDDDADEDEDQDEDEDEDEDEDE 910
Score = 26.7 bits (59), Expect = 7.1
Identities = 11/28 (39%), Positives = 23/28 (82%)
Query: 129 EQEEEEEQEEQEEEEEEEEEEEEEEEED 156
Q +E E ++ +E+E+++E+E+E+E+ED
Sbjct: 882 SQFQENEDDDADEDEDQDEDEDEDEDED 909
>gnl|CDD|222508 pfam14033, DUF4246, Protein of unknown function (DUF4246). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria and fungi.
Proteins in this family are typically between 392 and
644 amino acids in length.
Length = 496
Score = 29.9 bits (68), Expect = 0.60
Identities = 13/45 (28%), Positives = 21/45 (46%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
I+ E +++E EE + + E+E E E EE + EE
Sbjct: 256 IEYYGVEYHPKEKEPEEPKPEPGEDEDYEDYWERLEEYLDWREER 300
>gnl|CDD|218744 pfam05781, MRVI1, MRVI1 protein. This family consists of mammalian
MRVI1 proteins which are related to the
lymphoid-restricted membrane protein (JAW1) and the IP3
receptor associated cGMP kinase substrates A and B
(IRAGA and IRAGB). The function of MRVI1 is unknown
although mutations in the Mrvi1 gene induces myeloid
leukaemia by altering the expression of a gene important
for myeloid cell growth and/or differentiation so it has
been speculated that Mrvi1 is a tumour suppressor gene.
IRAG is very similar in sequence to MRVI1 and is an
essential NO/cGKI-dependent regulator of IP3-induced
calcium release. Activation of cGKI decreases
IP3-stimulated elevations in intracellular calcium,
induces smooth muscle relaxation and contributes to the
antiproliferative and pro-apoptotic effects of NO/cGMP.
Jaw1 is a member of a class of proteins with
COOH-terminal hydrophobic membrane anchors and is
structurally similar to proteins involved in vesicle
targeting and fusion. This suggests that the function
and/or the structure of the ER in lymphocytes may be
modified by lymphoid-restricted resident ER proteins.
Length = 538
Score = 30.0 bits (67), Expect = 0.60
Identities = 12/48 (25%), Positives = 23/48 (47%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
+EE+ + Q+ E + EE + ++ EE E EE +++ R
Sbjct: 411 WADAEEEKKTKKLQDLREPEGEEAVERTRKPSLSEEVAETEEWDKEQR 458
Score = 29.6 bits (66), Expect = 0.71
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
EEE + ++ ++ E E EE E + EE E EE + +
Sbjct: 415 EEEKKTKKLQDLREPEGEEAVERTRKPSLSEEVAETEEWDKEQR 458
Score = 27.3 bits (60), Expect = 4.2
Identities = 11/62 (17%), Positives = 27/62 (43%)
Query: 97 SRGNPMVSCVFWMIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+ S + ++ + E+E + ++ ++ +E E E+ + + EE E EE
Sbjct: 394 KQSEHRPSLLRFISTYSWADAEEEKKTKKLQDLREPEGEEAVERTRKPSLSEEVAETEEW 453
Query: 157 SR 158
+
Sbjct: 454 DK 455
Score = 26.9 bits (59), Expect = 6.3
Identities = 12/45 (26%), Positives = 22/45 (48%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
++K ++ +D + E EE E + EE E EE ++E+
Sbjct: 417 EKKTKKLQDLREPEGEEAVERTRKPSLSEEVAETEEWDKEQRSSK 461
>gnl|CDD|222160 pfam13476, AAA_23, AAA domain.
Length = 204
Score = 29.4 bits (66), Expect = 0.60
Identities = 21/54 (38%), Positives = 35/54 (64%)
Query: 107 FWMIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRIL 160
K KEK+E E+ E+E EE ++E++ E+ EE+E+++E EE +EE +L
Sbjct: 147 ELKFKRKEKKERLEELEKELEELEDEKDLLEKLLEEKEKKKELEELKEELEELL 200
>gnl|CDD|215094 PLN00188, PLN00188, enhanced disease resistance protein (EDR2);
Provisional.
Length = 719
Score = 29.8 bits (67), Expect = 0.61
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 116 EEEDEDEE-QEEEEEQEEEEEQEEQEEEEEEEEEEEE 151
E+ D+DEE Q E EQE E + E ++ EEE +++
Sbjct: 443 EDSDDDEEFQIPESEQEPETTKNETKDTAMEEEPQDK 479
Score = 29.4 bits (66), Expect = 0.82
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 121 DEEQEEEEE-QEEEEEQEEQEEEEEEEEEEEEEEEED 156
DE+ +++EE Q E EQE + + E ++ EEE +D
Sbjct: 442 DEDSDDDEEFQIPESEQEPETTKNETKDTAMEEEPQD 478
Score = 27.1 bits (60), Expect = 5.1
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 119 DEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
DED + +EE + E E++ E + E ++ EEE ++
Sbjct: 442 DEDSDDDEEFQIPESEQEPETTKNETKDTAMEEEPQD 478
>gnl|CDD|218555 pfam05320, Pox_RNA_Pol_19, Poxvirus DNA-directed RNA polymerase 19
kDa subunit. This family contains several DNA-directed
RNA polymerase 19 kDa polypeptides. The Poxvirus
DNA-directed RNA polymerase (EC: 2.7.7.6) catalyzes
DNA-template-directed extension of the 3'-end of an RNA
strand by one nucleotide at a time.
Length = 167
Score = 29.3 bits (66), Expect = 0.61
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 121 DEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
++ + + + ++++ EE EEEEE+EE+ E E D
Sbjct: 2 EDSDDIIDYESDDDDSEEYEEEEEDEEDAESLESSD 37
Score = 28.5 bits (64), Expect = 1.2
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 118 EDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
ED D+ + E + ++ EE EE+EE+EE+ E E +
Sbjct: 2 EDSDDIIDYESDDDDSEEYEEEEEDEEDAESLESSD 37
Score = 28.1 bits (63), Expect = 1.4
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 122 EEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
E+ ++ + E +++ E+ EEEEE+EE+ E E
Sbjct: 2 EDSDDIIDYESDDDDSEEYEEEEEDEEDAESLESSD 37
Score = 27.8 bits (62), Expect = 2.0
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 123 EQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
E ++ E ++ + +E EEEEE+EE+ E E S +
Sbjct: 2 EDSDDIIDYESDDDDSEEYEEEEEDEEDAESLESSDV 38
Score = 27.8 bits (62), Expect = 2.3
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEE 151
E+ D+ + E +++ EE E+EE++EE+ E E +
Sbjct: 2 EDSDDIIDYESDDDDSEEYEEEEEDEEDAESLESSD 37
Score = 27.4 bits (61), Expect = 2.7
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 120 EDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
ED + + E ++++ +E +EEEE+EE+ E E +
Sbjct: 2 EDSDDIIDYESDDDDSEEYEEEEEDEEDAESLESSD 37
Score = 26.2 bits (58), Expect = 6.9
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 117 EEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEE 152
E+ +D E ++ + EE +EE+E+EE+ E E +
Sbjct: 2 EDSDDIIDYESDDDDSEEYEEEEEDEEDAESLESSD 37
>gnl|CDD|218303 pfam04874, Mak16, Mak16 protein C-terminal region. The precise
function of this eukaryotic protein family is unknown.
The yeast orthologues have been implicated in cell cycle
progression and biogenesis of 60S ribosomal subunits.
The Schistosoma mansoni Mak16 has been shown to target
protein transport to the nucleolus.
Length = 97
Score = 28.7 bits (64), Expect = 0.63
Identities = 22/43 (51%), Positives = 31/43 (72%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+K E E+ E+ +EEE+EEEEE++E E E ++EE EEE ED
Sbjct: 52 KKALEAEESEENDEEEEEEEEEEDEGEIEYVSDDEELEEEIED 94
Score = 28.3 bits (63), Expect = 0.78
Identities = 21/40 (52%), Positives = 30/40 (75%)
Query: 117 EEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
EE E+ ++EEEEE+EEE+E E + ++EE EEE E+ ED
Sbjct: 58 EESEENDEEEEEEEEEEDEGEIEYVSDDEELEEEIEDLED 97
Score = 26.4 bits (58), Expect = 3.5
Identities = 21/40 (52%), Positives = 27/40 (67%)
Query: 120 EDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
E EE EE +E+EEEEE+EE E E E ++EE EEE +
Sbjct: 56 EAEESEENDEEEEEEEEEEDEGEIEYVSDDEELEEEIEDL 95
>gnl|CDD|222447 pfam13904, DUF4207, Domain of unknown function (DUF4207). This
family is found in eukaryotes; it has several conserved
tryptophan residues. The function is not known.
Length = 261
Score = 29.7 bits (67), Expect = 0.65
Identities = 12/42 (28%), Positives = 34/42 (80%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
K++ +E E ++ ++++++ EEE ++++++++EEEE +++ EE
Sbjct: 181 KKRLQEWELKKLKQQQQKREEERRKQRKKQQEEEERKQKAEE 222
Score = 27.8 bits (62), Expect = 2.3
Identities = 12/41 (29%), Positives = 27/41 (65%)
Query: 115 KEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
K+ + + + Q+ EE++++E ++E+EE E + +E+ EE
Sbjct: 96 KQAQRQKKLQKLLEEKQKQEREKEREEAELRQRLAKEKYEE 136
Score = 27.4 bits (61), Expect = 3.0
Identities = 12/45 (26%), Positives = 32/45 (71%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
KP+ ++E +++ +E E ++ ++Q+++ EEE ++ ++++EEE
Sbjct: 170 KPERNVSQEEAKKRLQEWELKKLKQQQQKREEERRKQRKKQQEEE 214
Score = 27.0 bits (60), Expect = 4.9
Identities = 11/35 (31%), Positives = 28/35 (80%)
Query: 108 WMIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEE 142
+ K K+++++ E+E +++ ++Q+EEEE++++ EE
Sbjct: 188 ELKKLKQQQQKREEERRKQRKKQQEEEERKQKAEE 222
Score = 27.0 bits (60), Expect = 5.2
Identities = 8/36 (22%), Positives = 28/36 (77%)
Query: 122 EEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+E E ++ +++++++EE+ ++ ++++EEEE ++ +
Sbjct: 185 QEWELKKLKQQQQKREEERRKQRKKQQEEEERKQKA 220
Score = 26.2 bits (58), Expect = 7.5
Identities = 11/44 (25%), Positives = 30/44 (68%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+ +E+ + +E E ++ +++Q+++EEE ++ ++++EEEE
Sbjct: 172 ERNVSQEEAKKRLQEWELKKLKQQQQKREEERRKQRKKQQEEEE 215
Score = 26.2 bits (58), Expect = 8.3
Identities = 12/44 (27%), Positives = 29/44 (65%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
+ +EE + QE E ++ ++++Q+ +EE ++ ++++EEEE
Sbjct: 172 ERNVSQEEAKKRLQEWELKKLKQQQQKREEERRKQRKKQQEEEE 215
>gnl|CDD|100111 cd05833, Ribosomal_P2, Ribosomal protein P2. This subfamily
represents the eukaryotic large ribosomal protein P2.
Eukaryotic P1 and P2 are functionally equivalent to the
bacterial protein L7/L12, but are not homologous to
L7/L12. P2 is located in the L12 stalk, with proteins
P1, P0, L11, and 28S rRNA. P1 and P2 are the only
proteins in the ribosome to occur as multimers, always
appearing as sets of heterodimers. Recent data indicate
that eukaryotes have four copies (two heterodimers),
while most archaeal species contain six copies of L12p
(three homodimers). Bacteria may have four or six copies
of L7/L12 (two or three homodimers) depending on the
species. Experiments using S. cerevisiae P1 and P2
indicate that P1 proteins are positioned more internally
with limited reactivity in the C-terminal domains, while
P2 proteins seem to be more externally located and are
more likely to interact with other cellular components.
In lower eukaryotes, P1 and P2 are further subdivided
into P1A, P1B, P2A, and P2B, which form P1A/P2B and
P1B/P2A heterodimers. Some plants have a third
P-protein, called P3, which is not homologous to P1 and
P2. In humans, P1 and P2 are strongly autoimmunogenic.
They play a significant role in the etiology and
pathogenesis of systemic lupus erythema (SLE). In
addition, the ribosome-inactivating protein
trichosanthin (TCS) interacts with human P0, P1, and P2,
with its primary binding site in the C-terminal region
of P2. TCS inactivates the ribosome by depurinating a
specific adenine in the sarcin-ricin loop of 28S rRNA.
Length = 109
Score = 28.8 bits (65), Expect = 0.65
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 138 EQEEEEEEEEEEEEEEEED 156
++EE++EE EEE ++D
Sbjct: 84 AAAKKEEKKEESEEESDDD 102
Score = 25.7 bits (57), Expect = 7.3
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 132 EEEEQEEQEEEEEEEEEE 149
++EE++EE EEE ++
Sbjct: 84 AAAKKEEKKEESEEESDD 101
Score = 25.3 bits (56), Expect = 9.3
Identities = 7/18 (38%), Positives = 13/18 (72%)
Query: 137 EEQEEEEEEEEEEEEEEE 154
++EE++EE EEE ++
Sbjct: 84 AAAKKEEKKEESEEESDD 101
>gnl|CDD|220379 pfam09750, DRY_EERY, Alternative splicing regulator. This entry
represents the conserved N-terminal region of SWAP
(suppressor-of-white-apricot protein) proteins. This
region contains two highly conserved motifs, viz: DRY
and EERY, which appear to be the sites for alternative
splicing of exons 2 and 3 of the SWAP mRNA. These
proteins are thus thought to be involved in
auto-regulation of pre-mRNA splicing. Most family
members are associated with two Surp domains pfam01805
and an Arginine- serine-rich binding region towards the
C-terminus.
Length = 121
Score = 28.9 bits (65), Expect = 0.65
Identities = 17/45 (37%), Positives = 28/45 (62%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
P + +EEDE EE+ EE+ + + + EE E+EEEE+ E ++
Sbjct: 60 PYKTDEEDEAEERFLNEERYRDLIKNDFEEAEKEEEEKRELAQKK 104
>gnl|CDD|221179 pfam11711, Tim54, Inner membrane protein import complex subunit
Tim54. Mitochondrial function depends on the import of
hundreds of different proteins synthesised in the
cytosol. Protein import is a multi-step pathway which
includes the binding of precursor proteins to surface
receptors, translocation of the precursor across one or
both mitochondrial membranes, and folding and assembly
of the imported protein inside the mitochondrion. Most
precursor proteins carry amino-terminal targeting
signals, called pre-sequences, and are imported into
mitochondria via import complexes located in both the
outer and the inner membrane (IM). The IM complex, TIM,
is made up of at least two proteins which mediate
translocation of proteins into the matrix by removing
their signal peptide and another pair of proteins, Tim54
and Tim22, that insert the polytopic proteins, that
carry internal targetting information, into the inner
membrane.
Length = 377
Score = 29.7 bits (67), Expect = 0.65
Identities = 14/48 (29%), Positives = 18/48 (37%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+ P E E DE E E + + E EE E EE E+
Sbjct: 195 LDPPEPPEPTVDEAAPETEVEATPAAESPAEPAEETAETTPEETEDAP 242
Score = 29.3 bits (66), Expect = 0.75
Identities = 14/47 (29%), Positives = 19/47 (40%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+P E E E + + E EE E EE E+ EEE +
Sbjct: 201 PEPTVDEAAPETEVEATPAAESPAEPAEETAETTPEETEDAPEEENN 247
Score = 28.2 bits (63), Expect = 1.8
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 117 EEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
E E E E E E+ + EE E+ EEE + +
Sbjct: 210 PETEVEATPAAESPAEPAEETAETTPEETEDAPEEENNKPVK 251
Score = 28.2 bits (63), Expect = 2.0
Identities = 11/43 (25%), Positives = 17/43 (39%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
+ + E + E E EE + EE E+ EEE +
Sbjct: 207 EAAPETEVEATPAAESPAEPAEETAETTPEETEDAPEEENNKP 249
Score = 27.4 bits (61), Expect = 3.9
Identities = 13/45 (28%), Positives = 15/45 (33%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
P + E E E E E E + E EE E EE
Sbjct: 194 PLDPPEPPEPTVDEAAPETEVEATPAAESPAEPAEETAETTPEET 238
Score = 27.0 bits (60), Expect = 4.8
Identities = 13/39 (33%), Positives = 16/39 (41%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
E E E E + EE E EE E+ EEE +
Sbjct: 211 ETEVEATPAAESPAEPAEETAETTPEETEDAPEEENNKP 249
Score = 27.0 bits (60), Expect = 5.6
Identities = 9/40 (22%), Positives = 15/40 (37%)
Query: 108 WMIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEE 147
+ + + E EE + EE E+ EEE +
Sbjct: 210 PETEVEATPAAESPAEPAEETAETTPEETEDAPEEENNKP 249
>gnl|CDD|217840 pfam04006, Mpp10, Mpp10 protein. This family includes proteins
related to Mpp10 (M phase phosphoprotein 10). The U3
small nucleolar ribonucleoprotein (snoRNP) is required
for three cleavage events that generate the mature 18S
rRNA from the pre-rRNA. In Saccharomyces cerevisiae,
depletion of Mpp10, a U3 snoRNP-specific protein, halts
18S rRNA production and impairs cleavage at the three U3
snoRNP-dependent sites.
Length = 613
Score = 29.6 bits (66), Expect = 0.67
Identities = 17/45 (37%), Positives = 27/45 (60%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
E + +E E E+ +E E+ EE++ EEEE EE+E E+ +R
Sbjct: 137 EADLFNESESSLEDLSDDETEDDEEKKMEEEEAGEEKESVEQATR 181
Score = 28.4 bits (63), Expect = 1.9
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
++ D++EE+EE+E E+E +E E + E E E+ D
Sbjct: 111 SEDSADDEEEEEEDESLEDEMIDDEDEADLFNESESSLEDLSDD 154
Score = 28.0 bits (62), Expect = 2.3
Identities = 14/44 (31%), Positives = 27/44 (61%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
K +EE++ED+EQE+++++EE E + + +E E + E
Sbjct: 292 KPEEEDEEDDEQEDDQDEEEPPEAAMDKVKLDEPVLEGVDLESP 335
Score = 28.0 bits (62), Expect = 2.4
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
++EEE+EDE E+E +E+E E E E+ ++E E+D
Sbjct: 117 DEEEEEEDESLEDEMIDDEDEADLFNESESSLEDLSDDETEDD 159
Score = 28.0 bits (62), Expect = 2.6
Identities = 13/45 (28%), Positives = 29/45 (64%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
KP+E++EED+++E +++EE+ E ++ + +E E + E +
Sbjct: 292 KPEEEDEEDDEQEDDQDEEEPPEAAMDKVKLDEPVLEGVDLESPK 336
Score = 28.0 bits (62), Expect = 2.7
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
+ + ED +++EEEEE E E++ +E+E + E E ED
Sbjct: 108 DMDSEDSADDEEEEEEDESLEDEMIDDEDEADLFNESESSLEDLS 152
Score = 27.3 bits (60), Expect = 4.1
Identities = 14/46 (30%), Positives = 26/46 (56%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
++ +DEDE E + E+ + E E++EE++ EEEE + +
Sbjct: 129 DEMIDDEDEADLFNESESSLEDLSDDETEDDEEKKMEEEEAGEEKE 174
Score = 27.3 bits (60), Expect = 4.8
Identities = 14/51 (27%), Positives = 32/51 (62%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRIL 160
+ E ++DE +E ++E + + EE++EE++E+E++++EEE +
Sbjct: 267 KDAGDDAELEDDEPDKEAVKKEADSKPEEEDEEDDEQEDDQDEEEPPEAAM 317
Score = 27.3 bits (60), Expect = 5.1
Identities = 12/44 (27%), Positives = 25/44 (56%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+ E E ++ +++ E++E+++ EEEE EE+E E+
Sbjct: 137 EADLFNESESSLEDLSDDETEDDEEKKMEEEEAGEEKESVEQAT 180
Score = 27.3 bits (60), Expect = 5.2
Identities = 13/45 (28%), Positives = 25/45 (55%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
+ E ++ ++E E +EE++ EE+E EE+E E+ E+
Sbjct: 142 NESESSLEDLSDDETEDDEEKKMEEEEAGEEKESVEQATREKKFD 186
Score = 26.9 bits (59), Expect = 5.9
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+E EE+DE E+ ++EEE E + + +E E + E +E S
Sbjct: 294 EEEDEEDDEQEDDQDEEEPPEAAMDKVKLDEPVLEGVDLESPKELS 339
Score = 26.5 bits (58), Expect = 7.1
Identities = 15/47 (31%), Positives = 28/47 (59%)
Query: 109 MIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
MI +++ + + E E+ ++E E +E+++ EEEE EE+E E
Sbjct: 131 MIDDEDEADLFNESESSLEDLSDDETEDDEEKKMEEEEAGEEKESVE 177
Score = 26.5 bits (58), Expect = 8.4
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 117 EEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
E++ D E E E+ + E +++EE++ EEEE EE++S
Sbjct: 135 EDEADLFNESESSLEDLSDDETEDDEEKKMEEEEAGEEKES 175
Score = 26.5 bits (58), Expect = 9.1
Identities = 13/45 (28%), Positives = 25/45 (55%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
E + E ++E E++EE++ +EEE EE+E E+ + +
Sbjct: 140 LFNESESSLEDLSDDETEDDEEKKMEEEEAGEEKESVEQATREKK 184
Score = 26.5 bits (58), Expect = 9.3
Identities = 11/46 (23%), Positives = 30/46 (65%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+ +KE + + EE++EE++++E+++ EE+ E ++ + +E +
Sbjct: 283 EAVKKEADSKPEEEDEEDDEQEDDQDEEEPPEAAMDKVKLDEPVLE 328
>gnl|CDD|223130 COG0052, RpsB, Ribosomal protein S2 [Translation, ribosomal
structure and biogenesis].
Length = 252
Score = 29.2 bits (66), Expect = 0.73
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 121 DEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
E +EEE +E+EE EE E +EE E
Sbjct: 218 RAILEGRGGALDEEEAAIEEDEEVEEFEAKEEAAE 252
Score = 28.0 bits (63), Expect = 1.8
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 119 DEDEEQEEEEEQEEEEEQEEQEEEEEEEEEE 149
+ +EEE EE++E +E E +EE E
Sbjct: 222 EGRGGALDEEEAAIEEDEEVEEFEAKEEAAE 252
Score = 26.5 bits (59), Expect = 6.8
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 128 EEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
E + ++EE EE+EE EE E +EE +
Sbjct: 222 EGRGGALDEEEAAIEEDEEVEEFEAKEEAAE 252
Score = 26.5 bits (59), Expect = 7.0
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEE 141
+ ++E+ EE+EE EE E +EE E
Sbjct: 224 RGGALDEEEAAIEEDEEVEEFEAKEEAAE 252
>gnl|CDD|235229 PRK04156, gltX, glutamyl-tRNA synthetase; Provisional.
Length = 567
Score = 29.4 bits (67), Expect = 0.74
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 127 EEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
EEQ E E+ E EEEEE++EE++
Sbjct: 63 LEEQRERLEELAPELLEEEEEKKEEKKG 90
Score = 27.5 bits (62), Expect = 3.6
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 132 EEEEQEEQEEEEEEEEEEEEEEEEDSRIL 160
EE++E EE E EEEEE++E+ + L
Sbjct: 63 LEEQRERLEELAPELLEEEEEKKEEKKGL 91
Score = 27.5 bits (62), Expect = 3.8
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 122 EEQEEEEEQEEEEEQEEQEEEEEEEEE 148
EEQ E E+ E EE+EE++EE++
Sbjct: 64 EEQRERLEELAPELLEEEEEKKEEKKG 90
Score = 26.7 bits (60), Expect = 5.9
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 125 EEEEEQEEEEEQEEQEEEEEEEEEEEE 151
EE+ E+ EE E EEEEE++EE++
Sbjct: 64 EEQRERLEELAPELLEEEEEKKEEKKG 90
>gnl|CDD|221198 pfam11740, KfrA_N, Plasmid replication region DNA-binding N-term.
The broad host-range plasmid RK2 is able to replicate in
and be inherited in a stable manner in diverse
Gram-negative bacterial species. It encodes a number of
co-ordinately regulated operons including a central
control korF1 operon that represses the kfrA operon. The
KfrA polypeptide is a site-specific DNA-binding protein
whose operator overlaps the kfrA promoter. The
N-terminus, containing an helix-turn-helix motif, is
essential for function. Downstream from this family is
an extended coiled-coil domain containing a heptad
repeat segment which is probably responsible for
formation of multimers, and may provide an example of a
bridge to host structures required for plasmid
partitioning.
Length = 120
Score = 28.8 bits (65), Expect = 0.75
Identities = 13/41 (31%), Positives = 17/41 (41%)
Query: 115 KEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+EE +E + E E E + E E E EEE E
Sbjct: 79 QEEAEERLAAARAAAEAERAELEAELAEAAAEAEALEEELE 119
Score = 27.3 bits (61), Expect = 2.2
Identities = 11/34 (32%), Positives = 13/34 (38%)
Query: 121 DEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
+ E + E E E E E E EEE E
Sbjct: 87 AAARAAAEAERAELEAELAEAAAEAEALEEELEA 120
Score = 27.3 bits (61), Expect = 2.4
Identities = 12/34 (35%), Positives = 12/34 (35%)
Query: 119 DEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEE 152
E E E E E E E E EEE E
Sbjct: 87 AAARAAAEAERAELEAELAEAAAEAEALEEELEA 120
Score = 26.1 bits (58), Expect = 6.0
Identities = 12/35 (34%), Positives = 15/35 (42%)
Query: 122 EEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
EE+ E E+ E E E E E E EE+
Sbjct: 83 EERLAAARAAAEAERAELEAELAEAAAEAEALEEE 117
Score = 25.7 bits (57), Expect = 6.5
Identities = 10/34 (29%), Positives = 12/34 (35%)
Query: 117 EEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEE 150
+ E E E E + E E EEE E
Sbjct: 87 AAARAAAEAERAELEAELAEAAAEAEALEEELEA 120
Score = 25.7 bits (57), Expect = 6.7
Identities = 11/33 (33%), Positives = 12/33 (36%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEE 148
E + E E E E E E EEE E
Sbjct: 88 AARAAAEAERAELEAELAEAAAEAEALEEELEA 120
Score = 25.7 bits (57), Expect = 8.5
Identities = 11/34 (32%), Positives = 12/34 (35%)
Query: 122 EEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
E E E + E E E E EEE E
Sbjct: 87 AAARAAAEAERAELEAELAEAAAEAEALEEELEA 120
>gnl|CDD|219256 pfam06991, Prp19_bind, Splicing factor, Prp19-binding domain. This
family represents the C-terminus (approximately 300
residues) of proteins that are involved as binding
partners for Prp19 as part of the nuclear pore complex.
The family in Drosophila is necessary for pre-mRNA
splicing, and the human protein has been found in
purifications of the spliceosome. In the past this
family was thought, erroneously, to be associated with
microfibrillin.
Length = 277
Score = 29.5 bits (66), Expect = 0.75
Identities = 20/31 (64%), Positives = 21/31 (67%)
Query: 126 EEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
E E E EEE E EEEEEE EEEEE + ED
Sbjct: 1 ETEVLELEEEDESGEEEEEESEEEEETDSED 31
Score = 29.1 bits (65), Expect = 0.87
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 125 EEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRILI 161
E E + EEE++ +EEEEE EEEEE + E+D +
Sbjct: 1 ETEVLELEEEDESGEEEEEESEEEEETDSEDDMEPRL 37
Score = 28.3 bits (63), Expect = 1.4
Identities = 18/37 (48%), Positives = 26/37 (70%)
Query: 123 EQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
E E E +EE+E EE+EEE EEEEE + E++ + R+
Sbjct: 1 ETEVLELEEEDESGEEEEEESEEEEETDSEDDMEPRL 37
Score = 28.0 bits (62), Expect = 2.0
Identities = 18/34 (52%), Positives = 23/34 (67%)
Query: 120 EDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
E E E EEE E EE+EE+ EEEEE + E++ E
Sbjct: 1 ETEVLELEEEDESGEEEEEESEEEEETDSEDDME 34
Score = 27.6 bits (61), Expect = 3.4
Identities = 24/67 (35%), Positives = 29/67 (43%), Gaps = 19/67 (28%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQE-------------------EEEEEEEEEEEEE 153
E EEEDE E+EEEE +EEEE E + E E E +E+ E
Sbjct: 5 LELEEEDESGEEEEEESEEEEETDSEDDMEPRLKPVFTRKKDRITIQEREREAAKEKALE 64
Query: 154 EEDSRIL 160
EE R
Sbjct: 65 EEAKRKA 71
Score = 27.2 bits (60), Expect = 4.2
Identities = 18/34 (52%), Positives = 24/34 (70%)
Query: 118 EDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEE 151
E E E EEE+E EEEE+E +EEEE + E++ E
Sbjct: 1 ETEVLELEEEDESGEEEEEESEEEEETDSEDDME 34
Score = 26.4 bits (58), Expect = 6.9
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 117 EEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEE 150
E + E +EE+E EEEEE+ E+EEE + E++ E
Sbjct: 1 ETEVLELEEEDESGEEEEEESEEEEETDSEDDME 34
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 29.7 bits (67), Expect = 0.75
Identities = 20/48 (41%), Positives = 24/48 (50%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRIL 160
KEE +E E EE EQ E +E +EE EE+ EE EE L
Sbjct: 334 ALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEAL 381
Score = 28.9 bits (65), Expect = 1.2
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+ +EE E+ E EE ++ E EE +EE EE+ EE E+
Sbjct: 333 EALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEE 376
Score = 28.5 bits (64), Expect = 1.8
Identities = 17/50 (34%), Positives = 25/50 (50%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
++ +++ E EE EE E EE EQ E EE +EE EE+ +
Sbjct: 325 LEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEEL 374
Score = 28.1 bits (63), Expect = 2.2
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
E+ E +E ++ E EE +E+ E++ EE EE E +
Sbjct: 340 EERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREEL 385
Score = 27.8 bits (62), Expect = 2.9
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
E EE +E E+ +E+ + +EE EE+E EE E+ E EE
Sbjct: 316 NELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEE 358
Score = 27.8 bits (62), Expect = 3.0
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
E+ E + +E +E EE +E+ E ++E EE E EE E+
Sbjct: 311 LEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLA 354
Score = 27.8 bits (62), Expect = 3.1
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRIL 160
E+ + +E +EE EE+ +E +E E EE E E E + I
Sbjct: 349 LEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIR 396
Score = 27.4 bits (61), Expect = 4.9
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 115 KEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
EE ++ + EE ++E EE+ EE EE E EE +
Sbjct: 346 LEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAE 387
Score = 27.4 bits (61), Expect = 5.0
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
+ +E E+ EE +E+ E +EE +E + EE E+ E EE
Sbjct: 317 ELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEE 362
Score = 27.0 bits (60), Expect = 5.3
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
+E E+ ++ E EE +EE E++ EE EE E EE + +
Sbjct: 342 RETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAEL 388
Score = 27.0 bits (60), Expect = 5.5
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRIL 160
KE EE +E+ + EEE +E +EE EE E+E EE + E EE E+ L
Sbjct: 239 KELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEEL 286
Score = 27.0 bits (60), Expect = 6.0
Identities = 17/50 (34%), Positives = 30/50 (60%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
++ + +E E+E EE EE E+ +E+ + +EE EE E EE E+ + +
Sbjct: 307 LRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAEL 356
Score = 26.6 bits (59), Expect = 7.6
Identities = 20/41 (48%), Positives = 27/41 (65%)
Query: 115 KEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
++E +E EE+ E+E EE QEE EE E+E EE + E EE
Sbjct: 238 RKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEE 278
Score = 26.6 bits (59), Expect = 7.9
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
++E E++ EE E+ E +EE E E E E E EE R
Sbjct: 359 AKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKR 404
Score = 26.6 bits (59), Expect = 8.9
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRILI 161
+E EEE E E+ + +EE EE EE+ + +EE EE EEE E++ +
Sbjct: 761 EELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRL 809
>gnl|CDD|191675 pfam07047, OPA3, Optic atrophy 3 protein (OPA3). This family
consists of several optic atrophy 3 (OPA3) proteins.
OPA3 deficiency causes type III 3-methylglutaconic
aciduria (MGA) in humans. This disease manifests with
early bilateral optic atrophy, spasticity,
extrapyramidal dysfunction, ataxia, and cognitive
deficits, but normal longevity.
Length = 134
Score = 28.8 bits (65), Expect = 0.79
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 122 EEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
E ++EEE Q+E EE E + E E E E ++
Sbjct: 103 EAKKEEELQQELEELEARVGELELEIERQKAR 134
Score = 28.0 bits (63), Expect = 1.3
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 120 EDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEE 152
++ ++EEE +QE EE + E E E E ++
Sbjct: 102 KEAKKEEELQQELEELEARVGELELEIERQKAR 134
Score = 28.0 bits (63), Expect = 1.4
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 124 QEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
+E ++EEE +QE +E E E E E E + +R
Sbjct: 100 SRKEAKKEEELQQELEELEARVGELELEIERQKAR 134
Score = 27.6 bits (62), Expect = 1.7
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 122 EEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
+E ++EEE ++E E+ E E E E E ++
Sbjct: 102 KEAKKEEELQQELEELEARVGELELEIERQKAR 134
>gnl|CDD|236912 PRK11448, hsdR, type I restriction enzyme EcoKI subunit R;
Provisional.
Length = 1123
Score = 29.5 bits (67), Expect = 0.80
Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 5/54 (9%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEE-----EEEEEDSRILI 161
E EE+ ++ E + E+ QE+ E ++ +++ +E ++ E EE++RILI
Sbjct: 187 AELEEKQQELEAQLEQLQEKAAETSQERKQKRKEITDQAAKRLELSEEETRILI 240
Score = 27.6 bits (62), Expect = 3.1
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEE 152
+EK + E +++E E E EE+++E E + E+
Sbjct: 163 REKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQLEQ 202
>gnl|CDD|214923 smart00937, PCRF, This domain is found in peptide chain release
factors.
Length = 116
Score = 28.6 bits (65), Expect = 0.82
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 115 KEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEE 147
+EEED++ + EEE EE E + E+E EE +
Sbjct: 4 EEEEDDEMRELAEEELEELEAELEEELEELLKL 36
Score = 27.8 bits (63), Expect = 1.3
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEE 149
E EE+ED+E E E+E EE + E EEE EE +
Sbjct: 1 ELLEEEEDDEMRELAEEELEELEAELEEELEELLKL 36
Score = 26.3 bits (59), Expect = 5.2
Identities = 19/39 (48%), Positives = 23/39 (58%)
Query: 123 EQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRILI 161
E EEEE +E E E+E EE E E EEE EE +L+
Sbjct: 1 ELLEEEEDDEMRELAEEELEELEAELEEELEELLKLLLL 39
Score = 25.9 bits (58), Expect = 6.4
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 120 EDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEE 152
E+EE +E E EEE +E + E EEE EE +
Sbjct: 4 EEEEDDEMRELAEEELEELEAELEEELEELLKL 36
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc
gene is often associated with scpB (TIGR00281) and scpA
genes, where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 29.6 bits (67), Expect = 0.84
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
E+ +E E E + EE E+ +E EEE E E E EE +++I
Sbjct: 746 EERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQI 791
Score = 29.3 bits (66), Expect = 1.0
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
E+ EE + +E E E E E+ E+ EE EEE E E E
Sbjct: 743 EQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAE 783
Score = 28.9 bits (65), Expect = 1.3
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
+ +E E + E+ E + +E EE E EE+ EE +EE E E E E+
Sbjct: 317 QLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELE 364
Score = 28.9 bits (65), Expect = 1.4
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
E+E E+ EE E EE EE +E +E E+ + E E + +R+
Sbjct: 445 LEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARL 491
Score = 28.5 bits (64), Expect = 1.8
Identities = 18/43 (41%), Positives = 25/43 (58%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+ + + DE E+ E E++ EE +EE E E E EE E E EE
Sbjct: 327 ELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEE 369
Score = 28.5 bits (64), Expect = 1.8
Identities = 21/46 (45%), Positives = 27/46 (58%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
KE + E E+ E+E EE QEE E EE EE EE EE E+ + +
Sbjct: 436 KELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAE 481
Score = 28.1 bits (63), Expect = 2.6
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
K+ + + EQ EE + +E E E E EE EE EE EE
Sbjct: 733 KDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEE 775
Score = 27.7 bits (62), Expect = 3.0
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
+ + E+ E+ + +E E E + E+ EE EE EEE E E
Sbjct: 739 EAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEI 784
Score = 27.7 bits (62), Expect = 3.7
Identities = 23/50 (46%), Positives = 28/50 (56%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRIL 160
K E+ E E + + EE E+E EE QEE E EE EE EE EE + L
Sbjct: 428 KKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQAL 477
Score = 27.3 bits (61), Expect = 4.3
Identities = 19/48 (39%), Positives = 25/48 (52%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
K E EE + E++ EE +EE E E + EE E E EE E E+
Sbjct: 331 KLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELE 378
Score = 26.9 bits (60), Expect = 5.3
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 113 KEKEEEDEDEEQEEEEEQEE-EEEQEEQEEEEEEEEEEEEEEEE 155
+ K +E +E E EE+ EE +EE E E E EE E E EE E
Sbjct: 329 ESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELES 372
Score = 26.6 bits (59), Expect = 8.9
Identities = 17/45 (37%), Positives = 23/45 (51%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
+E E E + EE E+ EE +EE E E E EE E + E+
Sbjct: 752 LSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKE 796
>gnl|CDD|227441 COG5110, RPN1, 26S proteasome regulatory complex component
[Posttranslational modification, protein turnover,
chaperones].
Length = 881
Score = 29.5 bits (66), Expect = 0.86
Identities = 13/53 (24%), Positives = 33/53 (62%)
Query: 109 MIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRILI 161
M+ +K+++ DE+ + E++ ++++++EEEE+ EE+ + D +L+
Sbjct: 1 MVDESDKKQQTIDEQSQISPEKQTPNKKDKKKEEEEQLSEEDAMLKGDLELLV 53
>gnl|CDD|219939 pfam08619, Nha1_C, Alkali metal cation/H+ antiporter Nha1 C
terminus. The C terminus of the plasma membrane Nha1
antiporter plays an important role in the immediate cell
response to hypo-osmotic shock which prevents an
execessive loss of ions and water. This domain is found
with pfam00999.
Length = 430
Score = 29.4 bits (66), Expect = 0.87
Identities = 10/44 (22%), Positives = 17/44 (38%)
Query: 115 KEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
K E + E E+ E ++ + ++EEE E R
Sbjct: 369 KNREPSSSSPPSRPRSRRDSEDEDTERDDSDSDDEEETPAERRR 412
>gnl|CDD|218115 pfam04502, DUF572, Family of unknown function (DUF572). Family of
eukaryotic proteins with undetermined function.
Length = 321
Score = 29.3 bits (66), Expect = 0.87
Identities = 12/45 (26%), Positives = 28/45 (62%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+ +++E+E+EE+E+E + E EE+ ++E+ E++E+
Sbjct: 178 RREKKEEEEEEEEDEALIKSLSFGPETEEDRRRADDEDSEDDEED 222
Score = 28.2 bits (63), Expect = 1.9
Identities = 11/42 (26%), Positives = 23/42 (54%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+K +E+++E E+E E+E + ++ E + + E E E
Sbjct: 111 DKLDEEQEERVEKEREEELAGDAMKKLENRTADSKREMEVLE 152
Score = 27.8 bits (62), Expect = 2.6
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 109 MIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
M++ + E+ E+EE+EEE+E + E EE+ ++E+ E+D
Sbjct: 172 MLEALFRREKKEEEEEEEEDEALIKSLSFGPETEEDRRRADDEDSEDDE 220
Score = 27.8 bits (62), Expect = 2.7
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 6/39 (15%)
Query: 126 EEEEQEEEEEQEEQEEEEEEEEEEE------EEEEEDSR 158
E + +EEQEE+ E+E EEE E DS+
Sbjct: 107 NYEADKLDEEQEERVEKEREEELAGDAMKKLENRTADSK 145
Score = 27.0 bits (60), Expect = 4.3
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 117 EEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEE----EEEEEDSRIL 160
D D E E+++EE+EEEE+E + E EED R
Sbjct: 164 RADVDVNSMLEALFRREKKEEEEEEEEDEALIKSLSFGPETEEDRRRA 211
Score = 27.0 bits (60), Expect = 4.5
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
+E+EEEDE + E EE++ ++E+ E++EE+ + +
Sbjct: 185 EEEEEEDEALIKSLSFGPETEEDRRRADDEDSEDDEEDNDNTPSPKS 231
Score = 27.0 bits (60), Expect = 5.3
Identities = 13/48 (27%), Positives = 27/48 (56%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
K +E+EEE+++ + E EE + ++E+ E++EE+ + S
Sbjct: 182 KEEEEEEEEDEALIKSLSFGPETEEDRRRADDEDSEDDEEDNDNTPSP 229
>gnl|CDD|226246 COG3723, RecT, Recombinational DNA repair protein (RecE pathway)
[DNA replication, recombination, and repair].
Length = 276
Score = 29.0 bits (65), Expect = 0.88
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEE 151
+ P+E E+ + E E E QE +EE E+ + EE+E E
Sbjct: 234 VTPEEDSEQLDSEPSGEPEAQETDEENEKPIDVSEEKEPITE 275
Score = 27.9 bits (62), Expect = 2.3
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 117 EEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
+ED EQ + E E E QE EE E+ + EE+E
Sbjct: 235 TPEEDSEQLDSEPSGEPEAQETDEENEKPIDVSEEKEP 272
>gnl|CDD|224212 COG1293, COG1293, Predicted RNA-binding protein homologous to
eukaryotic snRNP [Transcription].
Length = 564
Score = 29.3 bits (66), Expect = 0.89
Identities = 10/45 (22%), Positives = 19/45 (42%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
+ + E ++ E + E+ E ++ EE EE EE +
Sbjct: 382 LDRQLSELKEAIAYYESAKTALEKAEGKKAIEEIREELIEEGLLK 426
Score = 29.3 bits (66), Expect = 0.98
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 115 KEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
K+ E E++ E+E ++ E + E+QE+E EE E+ EE +
Sbjct: 281 KQLASELEKKLEKELKKLENKLEKQEDELEELEKAAEELRQ 321
Score = 29.3 bits (66), Expect = 1.0
Identities = 11/46 (23%), Positives = 19/46 (41%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
K K + + + E +E E + E+ E ++ EE EE
Sbjct: 373 KKLKGAKVNLDRQLSELKEAIAYYESAKTALEKAEGKKAIEEIREE 418
Score = 28.5 bits (64), Expect = 1.5
Identities = 13/42 (30%), Positives = 25/42 (59%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
K+ E E + ++E ++ E + E++E E EE E+ EE ++
Sbjct: 281 KQLASELEKKLEKELKKLENKLEKQEDELEELEKAAEELRQK 322
Score = 28.5 bits (64), Expect = 1.9
Identities = 12/50 (24%), Positives = 28/50 (56%)
Query: 106 VFWMIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+ + + ++ + E++ E+E ++ E + E++E+E EE E+ EE
Sbjct: 271 LDEKFERDKIKQLASELEKKLEKELKKLENKLEKQEDELEELEKAAEELR 320
>gnl|CDD|177755 PLN00152, PLN00152, DNA-directed RNA polymerase; Provisional.
Length = 130
Score = 28.7 bits (64), Expect = 0.91
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
EDE E E EE EE+ E +E + E E++EE+
Sbjct: 8 GYEDEPSEPEIEEGAEEDSESNNNDEVKGSIGENEDKEEQ 47
Score = 27.1 bits (60), Expect = 2.8
Identities = 10/39 (25%), Positives = 17/39 (43%)
Query: 118 EDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+ D + E+E E E +E EE+ E +E +
Sbjct: 1 DYNDMDMGYEDEPSEPEIEEGAEEDSESNNNDEVKGSIG 39
>gnl|CDD|237628 PRK14156, PRK14156, heat shock protein GrpE; Provisional.
Length = 177
Score = 28.6 bits (64), Expect = 0.94
Identities = 17/40 (42%), Positives = 20/40 (50%)
Query: 115 KEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
EE +E +EE E E EE EE EE E+ E E E
Sbjct: 2 SEEIKNEEVEEEVEATETEETVEEVVEETPEKSELELANE 41
Score = 28.6 bits (64), Expect = 1.1
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+E + E+ +EE E E +E EE E+ E+ E E E +E
Sbjct: 3 EEIKNEEVEEEVEATETEETVEEVVEETPEKSELELANERADE 45
Score = 28.6 bits (64), Expect = 1.2
Identities = 18/40 (45%), Positives = 22/40 (55%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
EE ++EE EEE E E EE E+ EE E+ E E E
Sbjct: 2 SEEIKNEEVEEEVEATETEETVEEVVEETPEKSELELANE 41
Score = 27.9 bits (62), Expect = 1.7
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 109 MIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
M + + EE +E+ E E EE EE +E E+ E E E +E E+
Sbjct: 1 MSEEIKNEEVEEEVEATETEETVEEVVEETPEKSELELANERADEFEN 48
Score = 27.5 bits (61), Expect = 2.9
Identities = 17/48 (35%), Positives = 26/48 (54%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRIL 160
+ K EE E+E + E E+ EE EE E+ E E E +E +++ L
Sbjct: 4 EIKNEEVEEEVEATETEETVEEVVEETPEKSELELANERADEFENKYL 51
Score = 26.3 bits (58), Expect = 6.0
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 118 EDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
+E + +E EEE E E +E EE EE E+ E E + R
Sbjct: 2 SEEIKNEEVEEEVEATETEETVEEVVEETPEKSELELANER 42
>gnl|CDD|215628 PLN03196, PLN03196, MOC1-like protein; Provisional.
Length = 487
Score = 29.3 bits (66), Expect = 0.97
Identities = 10/39 (25%), Positives = 18/39 (46%)
Query: 120 EDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
E EE E + E E +EE++++++E R
Sbjct: 445 EGEEMEPLFSMGGKLEMPGSESVSDEEDDDDDDEVLYRR 483
>gnl|CDD|215059 PLN00111, PLN00111, accumulation of photosystem one; Provisional.
Length = 399
Score = 29.2 bits (66), Expect = 1.0
Identities = 11/45 (24%), Positives = 18/45 (40%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
+ + + EDE +E + E E ++ E E EEE
Sbjct: 218 YRIGGRIVDFEDESEEPDPPPEGPSSPLLTELDDSEIEAPSSEEE 262
Score = 26.5 bits (59), Expect = 6.9
Identities = 9/42 (21%), Positives = 16/42 (38%)
Query: 115 KEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+ E++ EE + E E ++ E E EE+
Sbjct: 221 GGRIVDFEDESEEPDPPPEGPSSPLLTELDDSEIEAPSSEEE 262
Score = 26.5 bits (59), Expect = 7.3
Identities = 13/44 (29%), Positives = 18/44 (40%)
Query: 109 MIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEE 152
I + + EDE EE + E E ++ E E EEE
Sbjct: 219 RIGGRIVDFEDESEEPDPPPEGPSSPLLTELDDSEIEAPSSEEE 262
>gnl|CDD|224680 COG1766, fliF, Flagellar basal body M-ring protein [Cell motility
and secretion].
Length = 545
Score = 29.3 bits (66), Expect = 1.0
Identities = 15/55 (27%), Positives = 27/55 (49%)
Query: 106 VFWMIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRIL 160
V +I+P+ + + E EEE + EEE+ +E + +E+ +EE R
Sbjct: 462 VRPVIRPRRRRGAEALEAAEEERQGPEEEDVLPEEIRDSNDEQLGLGDEEQRRGK 516
>gnl|CDD|233914 TIGR02538, type_IV_pilB, type IV-A pilus assembly ATPase PilB.
This model describes a protein of type IV pilus
biogenesis designated PilB in Pseudomonas aeruginosa but
PilF in Neisseria gonorrhoeae; the more common usage,
reflected here, is PilB. This protein is an ATPase
involved in protein export for pilin assembly and is
closely related to GspE (TIGR02533) of type II
secretion, also called the main terminal branch of the
general secretion pathway. Note that type IV pilus
systems are often divided into type IV-A and IV-B, with
the latter group including bundle-forming pilus,
mannose-sensitive hemagglutinin, etc. Members of this
family are found in type IV-A systems [Cell envelope,
Surface structures, Protein fate, Protein and peptide
secretion and trafficking].
Length = 564
Score = 29.2 bits (66), Expect = 1.0
Identities = 8/35 (22%), Positives = 19/35 (54%)
Query: 115 KEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEE 149
KE DED EE + + +++ + E++ +++
Sbjct: 144 KELGDEDIGDLEELDVDAIDDEGPDDIEQDAVDDD 178
Score = 28.8 bits (65), Expect = 1.2
Identities = 8/44 (18%), Positives = 23/44 (52%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
+ +E +E+ + EE + ++E ++ E++ ++D+ I
Sbjct: 138 GSDSLAKELGDEDIGDLEELDVDAIDDEGPDDIEQDAVDDDAPI 181
>gnl|CDD|218311 pfam04888, SseC, Secretion system effector C (SseC) like family.
SseC is a secreted protein that forms a complex together
with SecB and SecD on the surface of Salmonella. All
these proteins are secreted by the type III secretion
system. Many mucosal pathogens use type III secretion
systems for the injection of effector proteins into
target cells. SecB, SseC and SecD are inserted into the
target cell membrane. where they form a small pore or
translocon. In addition to SseC, this family includes
the bacterial secreted proteins PopB, PepB, YopB and
EspD which are thought to be directly involved in pore
formation, and type III secretion system translocon.
Length = 303
Score = 29.0 bits (65), Expect = 1.0
Identities = 8/30 (26%), Positives = 20/30 (66%)
Query: 122 EEQEEEEEQEEEEEQEEQEEEEEEEEEEEE 151
++ E +++E++ +E QE+ ++ E+ EE
Sbjct: 22 QQLERARDKQEKKAEEYQEQIKKAIEKAEE 51
>gnl|CDD|185582 PTZ00373, PTZ00373, 60S Acidic ribosomal protein P2; Provisional.
Length = 112
Score = 28.0 bits (62), Expect = 1.0
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 134 EEQEEQEEEEEEEEEEEEEEEED 156
+ E ++EE++EEEEEEED
Sbjct: 82 ATAGAKAEAKKEEKKEEEEEEED 104
Score = 27.6 bits (61), Expect = 1.5
Identities = 11/17 (64%), Positives = 16/17 (94%)
Query: 140 EEEEEEEEEEEEEEEED 156
E ++EE++EEEEEEE+D
Sbjct: 89 EAKKEEKKEEEEEEEDD 105
Score = 26.4 bits (58), Expect = 4.7
Identities = 10/21 (47%), Positives = 17/21 (80%)
Query: 133 EEEQEEQEEEEEEEEEEEEEE 153
+ E ++EE++EEEEEEE++
Sbjct: 85 GAKAEAKKEEKKEEEEEEEDD 105
Score = 26.0 bits (57), Expect = 5.8
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 126 EEEEQEEEEEQEEQEEEEEEEEEE 149
+ E ++EE++EEEEEEE++
Sbjct: 82 ATAGAKAEAKKEEKKEEEEEEEDD 105
Score = 25.6 bits (56), Expect = 7.4
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 131 EEEEEQEEQEEEEEEEEEEEEEEE 154
+ E ++EE++EEEEEEE++
Sbjct: 82 ATAGAKAEAKKEEKKEEEEEEEDD 105
Score = 25.6 bits (56), Expect = 8.7
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 125 EEEEEQEEEEEQEEQEEEEEEEEE 148
+ E +++E++EEEEEEE++
Sbjct: 82 ATAGAKAEAKKEEKKEEEEEEEDD 105
Score = 25.3 bits (55), Expect = 9.9
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 132 EEEEQEEQEEEEEEEEEEEEEEEE 155
+ + ++EE++EEEEEEE++
Sbjct: 82 ATAGAKAEAKKEEKKEEEEEEEDD 105
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 29.2 bits (66), Expect = 1.1
Identities = 7/33 (21%), Positives = 20/33 (60%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEE 143
K+K + +++ + E + E+E+ E+ E+++
Sbjct: 1356 PRKKKSDSSSEDDDDSEVDDSEDEDDEDDEDDD 1388
Score = 28.5 bits (64), Expect = 1.9
Identities = 7/50 (14%), Positives = 25/50 (50%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
K + K+ + ++++ + +++++ E ++ E+E++ED
Sbjct: 1337 SKTRVKQASASQSSRLLRRPRKKKSDSSSEDDDDSEVDDSEDEDDEDDED 1386
Score = 28.1 bits (63), Expect = 2.3
Identities = 8/49 (16%), Positives = 25/49 (51%)
Query: 109 MIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+K + + +++ + E ++ E ++ E+E++E++E+D
Sbjct: 1340 RVKQASASQSSRLLRRPRKKKSDSSSEDDDDSEVDDSEDEDDEDDEDDD 1388
>gnl|CDD|227615 COG5296, COG5296, Transcription factor involved in TATA site
selection and in elongation by RNA polymerase II
[Transcription].
Length = 521
Score = 29.2 bits (65), Expect = 1.1
Identities = 12/45 (26%), Positives = 20/45 (44%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
E+ E + + +E E+ E+ QEE EE E+ +D
Sbjct: 163 SERHIELQRFKDYKELEESEQGLQEEYTPSYAEEAVEDISRTDDF 207
Score = 27.3 bits (60), Expect = 4.1
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
+E+ + E + ++ +E EE E+ +EE EE E+ SR
Sbjct: 158 EERLYSERHIELQRFKDYKELEESEQGLQEEYTPSYAEEAVEDISR 203
Score = 26.5 bits (58), Expect = 8.6
Identities = 11/45 (24%), Positives = 19/45 (42%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
E + + +E EE E+ +EE EE E+ ++ E
Sbjct: 167 IELQRFKDYKELEESEQGLQEEYTPSYAEEAVEDISRTDDFAELY 211
>gnl|CDD|237147 PRK12586, PRK12586, putative monovalent cation/H+ antiporter
subunit G; Reviewed.
Length = 145
Score = 28.6 bits (64), Expect = 1.1
Identities = 5/41 (12%), Positives = 14/41 (34%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+ D E+ E + ++ EE ++ ++
Sbjct: 104 RKNDAHTHASILLSSNEQNSTEALQLRAKKREEHRKKWYQN 144
Score = 25.5 bits (56), Expect = 9.8
Identities = 4/42 (9%), Positives = 14/42 (33%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
K + ++ E + ++ EE ++ + +
Sbjct: 104 RKNDAHTHASILLSSNEQNSTEALQLRAKKREEHRKKWYQND 145
>gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy
production and conversion].
Length = 660
Score = 28.9 bits (65), Expect = 1.3
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 5/52 (9%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE-----EEDSRIL 160
K E E EE + EE E EE E+ E+ EE E + D +L
Sbjct: 101 IKPAEKFSSEVEELTRKLEERLSELDEELEDLEDLLEELEPLAYLDFDLSLL 152
Score = 28.5 bits (64), Expect = 1.7
Identities = 15/52 (28%), Positives = 25/52 (48%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRILI 161
I P+E E+ + + + EE + E+ E EE + EE E +E+ L
Sbjct: 82 ILPEEVEKLEAELKSLEEVIKPAEKFSSEVEELTRKLEERLSELDEELEDLE 133
>gnl|CDD|215079 PLN00151, PLN00151, potassium transporter; Provisional.
Length = 852
Score = 28.9 bits (65), Expect = 1.3
Identities = 6/34 (17%), Positives = 16/34 (47%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEE 149
E+D ++ +++ ++ + EEEE+
Sbjct: 33 SEDDSEDPASLDDDDDDRDSGGGMLEEEEDGNMR 66
Score = 28.9 bits (65), Expect = 1.4
Identities = 6/34 (17%), Positives = 14/34 (41%)
Query: 118 EDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEE 151
++D E + ++++ EEEE+
Sbjct: 33 SEDDSEDPASLDDDDDDRDSGGGMLEEEEDGNMR 66
Score = 28.6 bits (64), Expect = 1.5
Identities = 6/34 (17%), Positives = 17/34 (50%)
Query: 119 DEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEE 152
ED+ ++ +++++++ EEEE+
Sbjct: 33 SEDDSEDPASLDDDDDDRDSGGGMLEEEEDGNMR 66
Score = 27.8 bits (62), Expect = 2.8
Identities = 7/34 (20%), Positives = 16/34 (47%)
Query: 117 EEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEE 150
ED+ E+ ++ +++ + EEEE+
Sbjct: 33 SEDDSEDPASLDDDDDDRDSGGGMLEEEEDGNMR 66
Score = 27.4 bits (61), Expect = 3.8
Identities = 6/35 (17%), Positives = 17/35 (48%)
Query: 124 QEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
E++ ++ ++ ++ + EEEE+ + R
Sbjct: 32 GSEDDSEDPASLDDDDDDRDSGGGMLEEEEDGNMR 66
>gnl|CDD|218771 pfam05835, Synaphin, Synaphin protein. This family consists of
several eukaryotic synaphin 1 and 2 proteins.
Synaphin/complexin is a cytosolic protein that
preferentially binds to syntaxin within the SNARE
complex. Synaphin promotes SNAREs to form precomplexes
that oligomerise into higher order structures. A peptide
from the central, syntaxin binding domain of synaphin
competitively inhibits these two proteins from
interacting and prevents SNARE complexes from
oligomerising. It is thought that oligomerisation of
SNARE complexes into a higher order structure creates a
SNARE scaffold for efficient, regulated fusion of
synaptic vesicles. Synaphin promotes neuronal exocytosis
by promoting interaction between the complementary
syntaxin and synaptobrevin transmembrane regions that
reside in opposing membranes prior to fusion.
Length = 139
Score = 28.3 bits (63), Expect = 1.3
Identities = 17/50 (34%), Positives = 27/50 (54%)
Query: 109 MIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
+ +E++ DE EEE++E +E E EEE + + + EEE E R
Sbjct: 16 VKGMLGGKEDEGDESDAEEEDEEIQEALREAEEERKAKHRKMEEEREVMR 65
>gnl|CDD|221342 pfam11960, DUF3474, Domain of unknown function (DUF3474). This
presumed domain is functionally uncharacterized. This
domain is found in bacteria and eukaryotes. This domain
is typically between 126 to 140 amino acids in length.
This domain is found associated with pfam00487.
Length = 135
Score = 28.1 bits (63), Expect = 1.3
Identities = 12/16 (75%), Positives = 13/16 (81%)
Query: 140 EEEEEEEEEEEEEEEE 155
EEEEEE +EEEEEE
Sbjct: 74 EEEEEENGNDEEEEEE 89
Score = 26.9 bits (60), Expect = 3.0
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 130 QEEEEEQEEQEEEEEEEEE 148
Q EEE+EE +EEEEEE
Sbjct: 71 QSVEEEEEENGNDEEEEEE 89
Score = 26.9 bits (60), Expect = 3.2
Identities = 12/17 (70%), Positives = 13/17 (76%)
Query: 140 EEEEEEEEEEEEEEEED 156
EEEEE +EEEEEE D
Sbjct: 75 EEEEENGNDEEEEEEFD 91
Score = 26.9 bits (60), Expect = 3.6
Identities = 11/16 (68%), Positives = 13/16 (81%)
Query: 141 EEEEEEEEEEEEEEED 156
EEEEEE +EEEEE+
Sbjct: 74 EEEEEENGNDEEEEEE 89
>gnl|CDD|184538 PRK14149, PRK14149, heat shock protein GrpE; Provisional.
Length = 191
Score = 28.3 bits (63), Expect = 1.4
Identities = 16/47 (34%), Positives = 29/47 (61%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+K + +E D ++E E E++ +E+Q EE++E E+E E +ED
Sbjct: 1 MKDEHNQEHDHLSQKEPESEEKACACKEQQGEEKQEASEKEGEIKED 47
Score = 26.4 bits (58), Expect = 6.4
Identities = 13/43 (30%), Positives = 26/43 (60%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+E + + E + EE+ +E+Q E+++E E+E E +E+ E
Sbjct: 7 QEHDHLSQKEPESEEKACACKEQQGEEKQEASEKEGEIKEDFE 49
>gnl|CDD|216546 pfam01516, Orbi_VP6, Orbivirus helicase VP6. The VP6 protein a
minor protein in the core of the virion is probably the
viral helicase.
Length = 322
Score = 28.5 bits (63), Expect = 1.4
Identities = 15/49 (30%), Positives = 31/49 (63%)
Query: 103 VSCVFWMIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEE 151
++ V W + KE+E +DE+ +E+ + E EQ+++ +EE ++E E+
Sbjct: 22 INLVDWFESGESKEKEPKDEDGQEQRISDGEGEQKQKGGKEESDKETED 70
>gnl|CDD|198139 smart01071, CDC37_N, Cdc37 N terminal kinase binding. Cdc37 is a
molecular chaperone required for the activity of
numerous eukaryotic protein kinases. This domain
corresponds to the N terminal domain which binds
predominantly to protein kinases.and is found N terminal
to the Hsp (Heat shocked protein) 90-binding domain.
Expression of a construct consisting of only the
N-terminal domain of Saccharomyces pombe Cdc37 results
in cellular viability. This indicates that interactions
with the cochaperone Hsp90 may not be essential for
Cdc37 function.
Length = 154
Score = 28.2 bits (63), Expect = 1.4
Identities = 12/50 (24%), Positives = 30/50 (60%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
+ K++ EE + + EE ++ ++ ++E++E ++ +E E+EE +I
Sbjct: 93 DQLKKELEEANGDSEGLLEELKKHRDKLKKEQKELRKKLDELEKEEKKKI 142
>gnl|CDD|224236 COG1317, FliH, Flagellar biosynthesis/type III secretory pathway
protein [Cell motility and secretion / Intracellular
trafficking and secretion].
Length = 234
Score = 28.5 bits (64), Expect = 1.5
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
EEE+ ++ E +EE+ E QE QE EE E EE +
Sbjct: 38 EEEELEQALEAKEEELESAAQELQEGIEEGAREGYEEGFQL 78
>gnl|CDD|236559 PRK09548, PRK09548, PTS system ascorbate-specific transporter
subunits IICB; Provisional.
Length = 602
Score = 28.6 bits (64), Expect = 1.5
Identities = 6/61 (9%), Positives = 21/61 (34%)
Query: 101 PMVSCVFWMIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRIL 160
+ + +MI ++ E + ++ + EE ++ +++ +
Sbjct: 449 LLALALVYMIFASKQLRAKEAAAAAGGKTVDQLDGYNLDEEVINAVQKLISKQDGGKPVR 508
Query: 161 I 161
I
Sbjct: 509 I 509
>gnl|CDD|129022 smart00786, SHR3_chaperone, ER membrane protein SH3. This family
of proteins are membrane localised chaperones that are
required for correct plasma membrane localisation of
amino acid permeases (AAPs). Shr3 prevents AAPs proteins
from aggregating and assists in their correct folding.
In the absence of Shr3, AAPs are retained in the ER.
Length = 196
Score = 28.1 bits (63), Expect = 1.5
Identities = 6/35 (17%), Positives = 16/35 (45%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEE 150
E +D +++E E+ +E ++ ++ E
Sbjct: 158 ERKDAKQKEEFAAEERKEALAAAAKKSATPQKVET 192
Score = 28.1 bits (63), Expect = 1.8
Identities = 5/35 (14%), Positives = 19/35 (54%)
Query: 123 EQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
E+++ +++EE +E +E ++ ++ ++
Sbjct: 158 ERKDAKQKEEFAAEERKEALAAAAKKSATPQKVET 192
Score = 27.7 bits (62), Expect = 2.3
Identities = 6/35 (17%), Positives = 16/35 (45%)
Query: 117 EEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEE 151
E + +++EE +E +E ++ ++ E
Sbjct: 158 ERKDAKQKEEFAAEERKEALAAAAKKSATPQKVET 192
>gnl|CDD|180960 PRK07400, PRK07400, 30S ribosomal protein S1; Reviewed.
Length = 318
Score = 28.6 bits (64), Expect = 1.5
Identities = 15/36 (41%), Positives = 18/36 (50%)
Query: 119 DEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
D+ EE + Q + E EE EEE EEE EE
Sbjct: 283 DKAEEMAAKYRQMLLAQAEGGEEPEEEMEEEVAAEE 318
Score = 28.2 bits (63), Expect = 1.9
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 109 MIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
M+K +K + +E + + + + +E EEE EEE EE
Sbjct: 274 MLKDPQKVFDKAEEMAAKYRQMLLAQAEGGEEPEEEMEEEVAAEE 318
Score = 26.3 bits (58), Expect = 8.2
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 122 EEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
++ EE + + + E EE EEE EEE +
Sbjct: 283 DKAEEMAAKYRQMLLAQAEGGEEPEEEMEEEVAAEE 318
>gnl|CDD|227199 COG4862, MecA, Negative regulator of genetic competence,
sporulation and motility [Posttranslational
modification, protein turnover, chaperones / Signal
transduction mechanisms / Cell motility and secretion].
Length = 224
Score = 28.1 bits (63), Expect = 1.5
Identities = 14/49 (28%), Positives = 28/49 (57%)
Query: 109 MIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+I K K E + ++ +E + +E+ EE E+ EE+ ++ E+EE+
Sbjct: 73 VIVTKSKIEGEGPDDLDEFLDMPDEDGAEEGLEQLEEKFDDVEKEEQGD 121
Score = 27.4 bits (61), Expect = 3.7
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 115 KEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
E D +E EE E+ EE+ + E+EE+ +E E+E +
Sbjct: 89 DEFLDMPDEDGAEEGLEQLEEKFDDVEKEEQGDEAEKEPD 128
Score = 26.6 bits (59), Expect = 5.1
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 117 EEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRILI 161
+E D E+ E+ E+ +E+ ++ E+EE+ +E E+E D I
Sbjct: 89 DEFLDMPDEDGAEEGLEQLEEKFDDVEKEEQGDEAEKEPDYLYYI 133
>gnl|CDD|223079 PHA03419, PHA03419, E4 protein; Provisional.
Length = 200
Score = 28.4 bits (63), Expect = 1.6
Identities = 10/41 (24%), Positives = 22/41 (53%)
Query: 115 KEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
K+E+ + E ++ + E+ ++ E + E E E E+ E+
Sbjct: 94 KKEKKKKETEKPAQGGEKPDQGPEAKGEGEGHEPEDPPPED 134
Score = 28.0 bits (62), Expect = 1.8
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
P K++E + +E E+ + E+ +Q + + E E E E+ ED+
Sbjct: 90 PGGKKKEKKKKETEKPAQGGEKPDQGPEAKGEGEGHEPEDPPPEDT 135
Score = 26.4 bits (58), Expect = 6.9
Identities = 10/42 (23%), Positives = 24/42 (57%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEE 152
K KEK++++ ++ + E+ ++ E + + E E E+ E+
Sbjct: 93 KKKEKKKKETEKPAQGGEKPDQGPEAKGEGEGHEPEDPPPED 134
>gnl|CDD|222010 pfam13254, DUF4045, Domain of unknown function (DUF4045). This
presumed domain is functionally uncharacterized. This
domain family is found in bacteria and eukaryotes, and
is typically between 384 and 430 amino acids in length.
Length = 414
Score = 28.7 bits (64), Expect = 1.6
Identities = 12/48 (25%), Positives = 19/48 (39%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
EK + E + + E+ + EEE + E +E EE S
Sbjct: 249 DTEKSSAPKPRETLDPKSPEKAPPIDTTEEELKSPEASPKESEEASAR 296
>gnl|CDD|211344 cd02867, PseudoU_synth_TruB_4, Pseudouridine synthase homolog 4.
This group consists of Eukaryotic TruB proteins similar
to Saccharomyces cerevisiae Pus4. S. cerevisiae Pus4,
makes psi55 in the T loop of both cytoplasmic and
mitochondrial tRNAs. Psi55 is almost universally
conserved. Pseudouridine synthases catalyze the
isomerization of specific uridines in an RNA molecule to
pseudouridines (5-ribosyluracil, psi).
Length = 312
Score = 28.2 bits (63), Expect = 1.7
Identities = 16/45 (35%), Positives = 20/45 (44%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
KE + E E E + EE E EE + + E EEE E S
Sbjct: 211 KELKTFAEVTELTATAEGDPVEEVEATHEESKRKSEVEEEANEKS 255
>gnl|CDD|216860 pfam02063, MARCKS, MARCKS family.
Length = 296
Score = 28.3 bits (62), Expect = 1.7
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 115 KEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
EE D E E+ E + EE E+ + EE + EE++ EE+
Sbjct: 210 GEEPAADAEPEQPEAKPEEAAPEKPQAEEAKAAEEQKAEEK 250
Score = 26.3 bits (57), Expect = 8.6
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 113 KEKEEEDEDEEQEEEEEQE---EEEEQEEQEEEEEEEEEEEEEEE 154
E+ D + EQ E + +E E+ + EE + EE++ EE+ EE
Sbjct: 210 GEEPAADAEPEQPEAKPEEAAPEKPQAEEAKAAEEQKAEEKPAEE 254
>gnl|CDD|227446 COG5116, RPN2, 26S proteasome regulatory complex component
[Posttranslational modification, protein turnover,
chaperones].
Length = 926
Score = 28.4 bits (63), Expect = 1.7
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEE 151
K K KE+ D+E + E E E + ++ EE+ +
Sbjct: 798 KQKPKEKGPNDKEIKIESPSVETEGERCTIKQREEKGIDAP 838
Score = 26.5 bits (58), Expect = 9.5
Identities = 9/41 (21%), Positives = 20/41 (48%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
K+K +E ++E + E E + E+ ++ EE+ +
Sbjct: 798 KQKPKEKGPNDKEIKIESPSVETEGERCTIKQREEKGIDAP 838
>gnl|CDD|236356 PRK08944, motB, flagellar motor protein MotB; Reviewed.
Length = 302
Score = 28.4 bits (64), Expect = 1.8
Identities = 12/49 (24%), Positives = 25/49 (51%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRILI 161
+++ + E E + E+ QE+ E+ ++ ++ E+E ED I I
Sbjct: 118 QQQRGKQRGGEASAEVKAEKAAAQEQIEDLVKKLAQQLEKEIEDGAIEI 166
>gnl|CDD|240521 cd13394, Syo1_like, Fungal symportin 1 (syo1) and similar proteins.
This family of eukaryotic proteins includes
Saccharomyces cerevisiae Ydl063c and Chaetomium
thermophilum Syo1, which mediate the co-import of two
ribosomal proteins, Rpl5 and Rpl11 (which both interact
with 5S rRNA) into the nucleus. Import precedes their
association with rRNA and subsequent ribosome assembly
in the nucleolus. The primary structure of syo1 is a
mixture of Armadillo- (ARM, N-terminal part of syo1) and
HEAT-repeats (C-terminal part of syo1).
Length = 597
Score = 28.4 bits (64), Expect = 1.8
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 115 KEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
KE + +D+E E+E+ +E+EE++E +E E E E
Sbjct: 303 KELDKKDDEAMEDEQSDEDEEEDEDDEASETLVPELSPLE 342
Score = 26.5 bits (59), Expect = 7.2
Identities = 13/41 (31%), Positives = 25/41 (60%)
Query: 117 EEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
E D+ +++ E+EQ +E+E+E++++E E E E S
Sbjct: 304 ELDKKDDEAMEDEQSDEDEEEDEDDEASETLVPELSPLEIS 344
>gnl|CDD|203444 pfam06424, PRP1_N, PRP1 splicing factor, N-terminal. This domain
is specific to the N-terminal part of the prp1 splicing
factor, which is involved in mRNA splicing (and possibly
also poly(A)+ RNA nuclear export and cell cycle
progression). This domain is specific to the N terminus
of the RNA splicing factor encoded by prp1. It is
involved in mRNA splicing and possibly also poly(A)and
RNA nuclear export and cell cycle progression.
Length = 131
Score = 27.6 bits (62), Expect = 1.8
Identities = 13/43 (30%), Positives = 26/43 (60%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
+ E+E+ D E +E+ +E ++ +E++E+EE E+ EE
Sbjct: 54 GKYDDEDEEADRIYESIDERMDERRKKRREQKEKEEIEKYREE 96
Score = 26.5 bits (59), Expect = 4.8
Identities = 12/49 (24%), Positives = 24/49 (48%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
+ ++E+ED Q+ + E + + + E+EE + E +E D R
Sbjct: 29 VDIDDEEDEDPKRYQDGDNEGLFSDGKYDDEDEEADRIYESIDERMDER 77
>gnl|CDD|220063 pfam08895, DUF1840, Domain of unknown function (DUF1840). This
family of proteins are functionally uncharacterized.
Length = 105
Score = 27.2 bits (61), Expect = 1.8
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 131 EEEEEQEEQEEEEEEEEEEEEEEEEDS 157
EE + E+E+++E+EE+EE S
Sbjct: 55 AEEARRAPPAEDEDDDEDEEDEEPAVS 81
Score = 26.8 bits (60), Expect = 2.9
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 123 EQEEEEEQEEEEEQEEQEEEEEEEEEEEEE 152
E E+ E E+++E+EE+EE
Sbjct: 50 EAAIAAEEARRAPPAEDEDDDEDEEDEEPA 79
>gnl|CDD|222613 pfam14235, DUF4337, Domain of unknown function (DUF4337). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are typically between 187 and 201 amino
acids in length. There is a single completely conserved
residue Q that may be functionally important.
Length = 158
Score = 27.9 bits (63), Expect = 1.8
Identities = 8/37 (21%), Positives = 18/37 (48%)
Query: 119 DEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
E + + ++E+ + E +E E + +E E E +
Sbjct: 70 AELQAKIARYKKEKARYRSEAKELEAKAKEAEAESDH 106
Score = 27.2 bits (61), Expect = 3.0
Identities = 7/40 (17%), Positives = 18/40 (45%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEE 150
P+ + + ++E+ E ++ E + +E E E +
Sbjct: 67 APRAELQAKIARYKKEKARYRSEAKELEAKAKEAEAESDH 106
Score = 26.8 bits (60), Expect = 3.9
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 121 DEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
E Q + ++E+ + E +E E + +E E E D
Sbjct: 70 AELQAKIARYKKEKARYRSEAKELEAKAKEAEAESD 105
Score = 26.4 bits (59), Expect = 5.3
Identities = 8/42 (19%), Positives = 17/42 (40%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEE 152
+ E + ++E+ E +E E + +E E E +
Sbjct: 65 AAAPRAELQAKIARYKKEKARYRSEAKELEAKAKEAEAESDH 106
>gnl|CDD|219069 pfam06512, Na_trans_assoc, Sodium ion transport-associated.
Members of this family contain a region found
exclusively in eukaryotic sodium channels or their
subunits, many of which are voltage-gated. Members very
often also contain between one and four copies of
pfam00520 and, less often, one copy of pfam00612.
Length = 230
Score = 28.1 bits (63), Expect = 1.8
Identities = 9/42 (21%), Positives = 19/42 (45%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
E + E +E+ E ++E ++ E + EE++ S
Sbjct: 109 SGESDLENLNDEDTSSESSYGFKEESKKGSAETLKLEEKDSS 150
Score = 27.3 bits (61), Expect = 3.5
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 14/60 (23%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEE--------------EEEEEEEEEEEEEDS 157
+++ E +EE ++ E + EE+ EEEEEE EEEE+
Sbjct: 117 LNDEDTSSESSYGFKEESKKGSAETLKLEEKDSSSSEGSTVDLEPPEEEEEEIAEEEEEV 176
Score = 26.6 bits (59), Expect = 6.4
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 109 MIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
K + + E+++ E + E E+EEEE EEEEE +E ED
Sbjct: 134 SKKGSAETLKLEEKDSSSSEGSTVDLEPPEEEEEEIAEEEEEVKEPED 181
>gnl|CDD|225638 COG3096, MukB, Uncharacterized protein involved in chromosome
partitioning [Cell division and chromosome
partitioning].
Length = 1480
Score = 28.7 bits (64), Expect = 1.8
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 114 EKEEEDEDEEQEEEEEQEE--EEEQEEQEEEEEEEEEEEEEEEE 155
E+ + D +E EEQ E EE E QEE E E E E +E
Sbjct: 351 ERYQADLEELTIRLEEQNEVVEEANERQEENEARAEAAELEVDE 394
>gnl|CDD|225468 COG2916, Hns, DNA-binding protein H-NS [General function prediction
only].
Length = 128
Score = 27.4 bits (61), Expect = 1.8
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEE 146
EE E EEQ +E QEEE + EE +E+
Sbjct: 21 EEMLEKEEQVVQERQEEEAAAIAEIEERQEK 51
Score = 27.0 bits (60), Expect = 2.5
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 122 EEQEEEEEQEEEEEQEEQEEEEEEEEEEEEE 152
EE E+EEQ +E QEE+ E EE +E+
Sbjct: 21 EEMLEKEEQVVQERQEEEAAAIAEIEERQEK 51
Score = 26.7 bits (59), Expect = 4.2
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 125 EEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
EE E+EE+ QE QEEE E EE +E+
Sbjct: 21 EEMLEKEEQVVQERQEEEAAAIAEIEERQEK 51
Score = 25.5 bits (56), Expect = 8.4
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 128 EEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
EE E+EEQ QE +EEE E EE +
Sbjct: 21 EEMLEKEEQVVQERQEEEAAAIAEIEERQEKY 52
>gnl|CDD|148679 pfam07218, RAP1, Rhoptry-associated protein 1 (RAP-1). This family
consists of several rhoptry-associated protein 1 (RAP-1)
sequences which appear to be specific to Plasmodium
falciparum.
Length = 790
Score = 28.5 bits (63), Expect = 1.8
Identities = 17/42 (40%), Positives = 27/42 (64%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEE 152
K E+EE + DEE EE EE ++E ++ E +EE+ + +EE
Sbjct: 239 KVAEEEEFELDEEHEEAEEDKKEALEKIGAEGDEEKFKFDEE 280
Score = 26.6 bits (58), Expect = 8.4
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 115 KEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
K + D+ E+EE E EE EE EE ++E E+ E +EE
Sbjct: 234 KNDGDKVAEEEEFELDEEHEEAEEDKKEALEKIGAEGDEE 273
>gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1. This domain
family is found in eukaryotes, and is approximately 40
amino acids in length. The family is found in
association with pfam07719, pfam00515. There is a single
completely conserved residue L that may be functionally
important. NARP1 is the mammalian homologue of a yeast
N-terminal acetyltransferase that regulates entry into
the G(0) phase of the cell cycle.
Length = 516
Score = 28.4 bits (64), Expect = 1.9
Identities = 8/43 (18%), Positives = 20/43 (46%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
E ++ ++Q + E++ E+EE E+ +++ E
Sbjct: 404 GNLSPAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKA 446
Score = 28.4 bits (64), Expect = 1.9
Identities = 8/44 (18%), Positives = 25/44 (56%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
K++ + ++ E+EE E+ +++ E ++ + + E ++ + D
Sbjct: 416 KKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKKVDPD 459
Score = 27.6 bits (62), Expect = 3.1
Identities = 12/49 (24%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Query: 111 KPKEKEEEDEDEEQEEEEEQE-----EEEEQEEQEEEEEEEEEEEEEEE 154
KP E E+E+ E E +++ + E++ E+EE E+ +++
Sbjct: 390 KPLLAEGEEEEGENGNLSPAERKKLRKKQRKAEKKAEKEEAEKAAAKKK 438
>gnl|CDD|205206 pfam13025, DUF3886, Protein of unknown function (DUF3886). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are approximately 90 amino acids in length.
There are two completely conserved L residues that may
be functionally important.
Length = 70
Score = 26.5 bits (59), Expect = 1.9
Identities = 19/43 (44%), Positives = 30/43 (69%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
K K+KE + E+E++EEEEE + EE++E+E+ + EE E E
Sbjct: 23 KAKKKELKAEEEKREEEEEARKREERKEREKNKSFEELLNESE 65
Score = 25.4 bits (56), Expect = 5.7
Identities = 17/45 (37%), Positives = 28/45 (62%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
K K K++E + EE++ EEE+E + +E +E E+ + EE E E
Sbjct: 21 KLKAKKKELKAEEEKREEEEEARKREERKEREKNKSFEELLNESE 65
>gnl|CDD|240341 PTZ00272, PTZ00272, heat shock protein 83 kDa (Hsp83); Provisional.
Length = 701
Score = 28.5 bits (63), Expect = 1.9
Identities = 14/43 (32%), Positives = 29/43 (67%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
K EKE DEDEE ++ +++ EE + E+ +E +E ++++ ++
Sbjct: 209 KTTEKEVTDEDEEDTKKADEDGEEPKVEEVKEGDEGKKKKTKK 251
Score = 26.6 bits (58), Expect = 7.6
Identities = 13/41 (31%), Positives = 28/41 (68%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
EK E E +++EE+ ++ +E+ EE + EE +E +E ++++
Sbjct: 208 EKTTEKEVTDEDEEDTKKADEDGEEPKVEEVKEGDEGKKKK 248
Score = 26.2 bits (57), Expect = 9.8
Identities = 12/42 (28%), Positives = 30/42 (71%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
KE +EDE++ ++ +E+ EE + +E +E +E ++++ ++ +E
Sbjct: 213 KEVTDEDEEDTKKADEDGEEPKVEEVKEGDEGKKKKTKKVKE 254
>gnl|CDD|221473 pfam12230, PRP21_like_P, Pre-mRNA splicing factor PRP21 like
protein. This domain family is found in eukaryotes, and
is typically between 212 and 238 amino acids in length.
The family is found in association with pfam01805. There
are two completely conserved residues (W and H) that may
be functionally important. PRP21 is required for
assembly of the prespliceosome and it interacts with U2
snRNP and/or pre-mRNA in the prespliceosome. This family
also contains proteins similar to PRP21, such as the
mammalian SF3a. SF3a also interacts with U2 snRNP from
the prespliceosome, converting it to its active form.
Length = 230
Score = 28.2 bits (63), Expect = 1.9
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 117 EEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
E+ +E + EEE+E +EEEE+ +EE++EE + S
Sbjct: 90 EQKSKALEEPDAAAAPEEEEEMEEEEEDIDEEKKEESAKKST 131
>gnl|CDD|165026 PHA02644, PHA02644, hypothetical protein; Provisional.
Length = 112
Score = 27.3 bits (59), Expect = 1.9
Identities = 19/45 (42%), Positives = 32/45 (71%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
KE E+E + E+ E E+E++ E+ + E E++ E+ E E+E+E EDS
Sbjct: 61 KENEDEKKPEKPENEDEKKPEKPENEDEKKPEKPENEDEKEFEDS 105
Score = 26.1 bits (56), Expect = 6.5
Identities = 17/42 (40%), Positives = 30/42 (71%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+KE EDE + ++ E E E++ E+ E E+E++ E+ E E+E+E
Sbjct: 60 KKENEDEKKPEKPENEDEKKPEKPENEDEKKPEKPENEDEKE 101
>gnl|CDD|191187 pfam05087, Rota_VP2, Rotavirus VP2 protein. Rotavirus particles
consist of three concentric proteinaceous capsid layers.
The innermost capsid (core) is made of VP2. The genomic
RNA and the two minor proteins VP1 and VP3 are
encapsidated within this layer. The N-terminus of
rotavirus VP2 is necessary for the encapsidation of VP1
and VP3.
Length = 887
Score = 28.4 bits (63), Expect = 1.9
Identities = 11/48 (22%), Positives = 28/48 (58%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
I ++ +E +DE+Q+++ E +E+ +++EE + + +E+ S
Sbjct: 11 INNNDRMQEKDDEKQDQKNRMELKEKVLDKKEEVVTDNVDSPVKEQSS 58
Score = 27.2 bits (60), Expect = 4.4
Identities = 8/48 (16%), Positives = 27/48 (56%)
Query: 109 MIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
M +E + ++ +E++ E+++++ E +E+ +++EE ++
Sbjct: 1 MAYRNRREANINNNDRMQEKDDEKQDQKNRMELKEKVLDKKEEVVTDN 48
Score = 26.8 bits (59), Expect = 7.4
Identities = 8/49 (16%), Positives = 25/49 (51%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
+ +E++DE ++Q+ E +E+ +++E + + +E+ +
Sbjct: 14 NDRMQEKDDEKQDQKNRMELKEKVLDKKEEVVTDNVDSPVKEQSSQENL 62
>gnl|CDD|219009 pfam06404, PSK, Phytosulfokine precursor protein (PSK). This
family consists of several plant specific phytosulfokine
precursor proteins. Phytosulfokines, are active as
either a pentapeptide or a C-terminally truncated
tetrapeptide. These compounds were first isolated
because of their ability to stimulate cell division in
somatic embryo cultures of Asparagus officinalis.
Length = 74
Score = 26.6 bits (59), Expect = 1.9
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 121 DEEQEEEEEQEEEEEQEEQEEEEEEEEEEE 150
E + E + + +++E E E E EEE
Sbjct: 24 HESSKIEAAESSKVDEDEVVSECEGEGEEE 53
Score = 26.2 bits (58), Expect = 2.8
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 127 EEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
E + E + + +E+E E E E EE+
Sbjct: 24 HESSKIEAAESSKVDEDEVVSECEGEGEEE 53
Score = 25.4 bits (56), Expect = 6.4
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 121 DEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
D E + + E + +++E E E E EEE
Sbjct: 21 DTGHESSKIEAAESSKVDEDEVVSECEGEGEEE 53
Score = 25.0 bits (55), Expect = 7.0
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 125 EEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
E + E E + E+E E E E EEE
Sbjct: 24 HESSKIEAAESSKVDEDEVVSECEGEGEEE 53
>gnl|CDD|202427 pfam02841, GBP_C, Guanylate-binding protein, C-terminal domain.
Transcription of the anti-viral guanylate-binding
protein (GBP) is induced by interferon-gamma during
macrophage induction. This family contains GBP1 and
GPB2, both GTPases capable of binding GTP, GDP and GMP.
Length = 297
Score = 28.0 bits (63), Expect = 2.0
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRILI 161
KEK E E + E E E+E +E+Q+EEE+ E +E +E + LI
Sbjct: 202 KEKAIEAE-RAKAEAAEAEQELLREKQKEEEQMMEAQERSYQEHVKQLI 249
Score = 28.0 bits (63), Expect = 2.2
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEE 152
K K E E E E E++ E+Q+E+E+ E +E +E
Sbjct: 202 KEKAIEAERAKAEAAEAEQELLREKQKEEEQMMEAQERSYQE 243
Score = 26.1 bits (58), Expect = 9.2
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
+ K E E E++ E+Q+EEE+ E +E +E ++ E
Sbjct: 210 RAKAEAAEAEQELLREKQKEEEQMMEAQERSYQEHVKQLIE 250
>gnl|CDD|184860 PRK14858, tatA, twin arginine translocase protein A; Provisional.
Length = 108
Score = 27.1 bits (60), Expect = 2.0
Identities = 10/44 (22%), Positives = 25/44 (56%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
K+ +E+ +E+E+ ++ E ++E E E + EE++ + +
Sbjct: 47 KQSMQEESRTAEEKEKAEKLAETKKEAEAPEAKAEEDQAPKPKG 90
Score = 26.0 bits (57), Expect = 5.0
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
K+ ++ + QEE EE+E+ E+ E ++E E E + EED
Sbjct: 40 KKATDDFKQSMQEESRTAEEKEKAEKLAETKKEAEAPEAKAEEDQA 85
Score = 25.6 bits (56), Expect = 6.7
Identities = 11/43 (25%), Positives = 22/43 (51%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
EE EE+E+ E+ E +++ E E + EE++ + +
Sbjct: 52 EESRTAEEKEKAEKLAETKKEAEAPEAKAEEDQAPKPKGAGEP 94
>gnl|CDD|236233 PRK08311, PRK08311, putative RNA polymerase sigma factor SigI;
Reviewed.
Length = 237
Score = 27.9 bits (63), Expect = 2.0
Identities = 20/42 (47%), Positives = 23/42 (54%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
+ DEE EEE + E E EE +EEEE EE EE EE
Sbjct: 95 HNLVLSNSDEEDEEENDIEIELSLEEYQEEEENEERREEIEE 136
>gnl|CDD|234456 TIGR04074, bacter_Hen1, 3' terminal RNA ribose
2'-O-methyltransferase Hen1. Members of this protein
family are bacterial Hen1, a 3' terminal RNA ribose
2'-O-methyltransferase that acts in bacterial RNA
repair. All members of the seed alignment belong to a
cassette with the RNA repair enzyme polynucleotide
kinase-phosphatase (Pnkp). Chemically similar Hen1 in
eukaryotes acts instead on small regulatory RNAs
[Transcription, RNA processing, Protein synthesis, tRNA
and rRNA base modification].
Length = 462
Score = 28.0 bits (63), Expect = 2.0
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 115 KEEEDEDEEQEEEEEQEEEEEQ 136
+ +E E EE E EE QEE E+
Sbjct: 241 EADEAEPEEAETEEAQEEAAEK 262
Score = 27.7 bits (62), Expect = 3.0
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 127 EEEQEEEEEQEEQEEEEEEEEE 148
E ++ E EE E +E +EE E+
Sbjct: 241 EADEAEPEEAETEEAQEEAAEK 262
Score = 27.7 bits (62), Expect = 3.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 117 EEDEDEEQEEEEEQEEEEEQEE 138
E DE E +E E E+ +EE E+
Sbjct: 241 EADEAEPEEAETEEAQEEAAEK 262
Score = 26.9 bits (60), Expect = 6.2
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 135 EQEEQEEEEEEEEEEEEEEEE 155
E +E E EE E EE +EE E
Sbjct: 241 EADEAEPEEAETEEAQEEAAE 261
Score = 26.5 bits (59), Expect = 7.8
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 132 EEEEQEEQEEEEEEEEEEEEEE 153
E +E E +E E EE +EE E+
Sbjct: 241 EADEAEPEEAETEEAQEEAAEK 262
Score = 26.5 bits (59), Expect = 8.7
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 136 QEEQEEEEEEEEEEEEEEEEDSRI 159
+ ++ E EE E EE +EE +
Sbjct: 241 EADEAEPEEAETEEAQEEAAEKPP 264
Score = 26.1 bits (58), Expect = 9.0
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 124 QEEEEEQEEEEEQEEQEEEEEE 145
+ +E E EE E +E QEE E+
Sbjct: 241 EADEAEPEEAETEEAQEEAAEK 262
Score = 26.1 bits (58), Expect = 9.4
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQ 139
E ++ + E+ E EE +EE ++
Sbjct: 241 EADEAEPEEAETEEAQEEAAEKPP 264
Score = 26.1 bits (58), Expect = 9.4
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 133 EEEQEEQEEEEEEEEEEEEEEE 154
E ++ E EE E EE +EE E+
Sbjct: 241 EADEAEPEEAETEEAQEEAAEK 262
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and
C-terminal domains of this protein are well conserved,
but the central hinge region is skewed in composition
and highly divergent [Cellular processes, Cell division,
DNA metabolism, Chromosome-associated proteins].
Length = 1164
Score = 28.5 bits (64), Expect = 2.0
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
E+E E+ + E +E + EE EE + EE + E SRI
Sbjct: 747 SSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRI 793
Score = 27.3 bits (61), Expect = 4.8
Identities = 10/40 (25%), Positives = 23/40 (57%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEE 152
++ ++E E+E QE +E++ + +E+ + E+E E
Sbjct: 819 QKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIEN 858
Score = 26.6 bits (59), Expect = 7.5
Identities = 18/51 (35%), Positives = 31/51 (60%)
Query: 109 MIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
I EKE E ++E+E+ +E+ EE E++ E+E E + E +E ++RI
Sbjct: 717 KIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARI 767
Score = 26.6 bits (59), Expect = 7.7
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
EKE ++ E++ + +EQ + E+E + ++EE EEE EE
Sbjct: 832 EKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEE 872
Score = 26.6 bits (59), Expect = 8.5
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+E+ + +EQ + E+E E ++EE EEE EE E +
Sbjct: 838 LQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRD 879
>gnl|CDD|224849 COG1938, COG1938, Archaeal enzymes of ATP-grasp superfamily
[General function prediction only].
Length = 244
Score = 28.1 bits (63), Expect = 2.1
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 127 EEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRILI 161
E+E EE EEQ E+ E+ E+EEE E EE+ + +
Sbjct: 210 EKEAEEIEEQLEKLAEQLEKEEERVEREEEPPMYM 244
Score = 27.7 bits (62), Expect = 2.3
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 119 DEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
D D+ ++E EE EE+ E+ ++ E+EEE E EEE
Sbjct: 205 DTDKLEKEAEEIEEQLEKLAEQLEKEEERVEREEEP 240
Score = 26.9 bits (60), Expect = 4.3
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 118 EDEDEEQEEEEEQEEEEEQEEQEEEEEEEEE 148
E E EE EE+ E+ E+ ++E+E E EEE
Sbjct: 210 EKEAEEIEEQLEKLAEQLEKEEERVEREEEP 240
Score = 26.9 bits (60), Expect = 4.9
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 126 EEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
E+E +E EE+ E+ E+ E+EEE E EEE
Sbjct: 210 EKEAEEIEEQLEKLAEQLEKEEERVEREEEPPM 242
>gnl|CDD|219355 pfam07267, Nucleo_P87, Nucleopolyhedrovirus capsid protein P87.
This family consists of several Nucleopolyhedrovirus
capsid protein P87 sequences. P87 is expressed late in
infection and concentrated in infected cell nuclei.
Length = 606
Score = 28.3 bits (63), Expect = 2.3
Identities = 11/33 (33%), Positives = 22/33 (66%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEE 144
P + DEDE+ +E+E + E+E++ + EE++
Sbjct: 365 PLPEYSSDEDEDDSDEDEVDYEKERKRRREEDK 397
>gnl|CDD|184859 PRK14857, tatA, twin arginine translocase protein A; Provisional.
Length = 90
Score = 27.0 bits (60), Expect = 2.3
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
KE E E + E E E+E + E E + E +E+ + E +S
Sbjct: 46 KEFENEIKREMAEPEQEVKAPAELESNQTNEANQEQVDAENSPES 90
>gnl|CDD|177447 PHA02664, PHA02664, hypothetical protein; Provisional.
Length = 534
Score = 28.0 bits (62), Expect = 2.3
Identities = 13/57 (22%), Positives = 27/57 (47%), Gaps = 8/57 (14%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQE--------EEEEEEEEEEEEEEEDSRI 159
+ +ED+ +EQE +E+ + E+ + E+E + ++ +E DS I
Sbjct: 447 ADRADSDEDDMDEQESGDERADGEDDSDSSYSYSTTSSEDESDSADDSWGDESDSGI 503
>gnl|CDD|191249 pfam05279, Asp-B-Hydro_N, Aspartyl beta-hydroxylase N-terminal
region. This family includes the N-terminal regions of
the junctin, junctate and aspartyl beta-hydroxylase
proteins. Junctate is an integral ER/SR membrane calcium
binding protein, which comes from an alternatively
spliced form of the same gene that generates aspartyl
beta-hydroxylase and junctin. Aspartyl beta-hydroxylase
catalyzes the post-translational hydroxylation of
aspartic acid or asparagine residues contained within
epidermal growth factor (EGF) domains of proteins.
Length = 240
Score = 28.0 bits (62), Expect = 2.3
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
EEE +++ Q E+ +++E+ +E + +E++ EDS
Sbjct: 102 EEEVKEQLQSLLEKIVVSKQEEDGPGKEPQLDEDKFLLAEDS 143
Score = 27.6 bits (61), Expect = 2.8
Identities = 9/37 (24%), Positives = 20/37 (54%)
Query: 122 EEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
EE+ +E+ Q E+ ++EE+ +E + +E+
Sbjct: 102 EEEVKEQLQSLLEKIVVSKQEEDGPGKEPQLDEDKFL 138
Score = 26.8 bits (59), Expect = 5.1
Identities = 7/46 (15%), Positives = 24/46 (52%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+K + + ++ ++EE+ +E Q ++++ E+ ++ +E
Sbjct: 105 VKEQLQSLLEKIVVSKQEEDGPGKEPQLDEDKFLLAEDSDDRQETL 150
Score = 26.4 bits (58), Expect = 7.2
Identities = 10/48 (20%), Positives = 25/48 (52%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
K +E+ +E E+ ++EE+ +E + +E++ E+ +D +
Sbjct: 100 KVEEEVKEQLQSLLEKIVVSKQEEDGPGKEPQLDEDKFLLAEDSDDRQ 147
Score = 26.4 bits (58), Expect = 7.2
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRIL 160
KEK E E+E+ +E E+ E + E + EE+ +EE+ E+ I
Sbjct: 178 KEKASEQENEDSKEPVEKAERTKAETDDVTEEDYDEEDNPVEDSKAIK 225
>gnl|CDD|217940 pfam04177, TAP42, TAP42-like family. The TOR signalling pathway
activates a cell-growth program in response to
nutrients. TIP41 (pfam04176) interacts with TAP42 and
negatively regulates the TOR signaling pathway.
Length = 335
Score = 28.0 bits (63), Expect = 2.3
Identities = 12/45 (26%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 117 EEDEDEEQEEEEEQEEEEE---QEEQEEEEEEEEEEEEEEEEDSR 158
+E ++E + + E E+EE++E++EE+++EE +R
Sbjct: 281 DEYLEQEMKRGGVPQGGGEAAASAEEEEDDEDDEEDDDEETLKAR 325
Score = 26.5 bits (59), Expect = 7.4
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 115 KEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEE 149
K E EEEE+ E+ EE+++EE +
Sbjct: 289 KRGGVPQGGGEAAASAEEEEDDEDDEEDDDEETLK 323
Score = 26.5 bits (59), Expect = 7.5
Identities = 10/38 (26%), Positives = 20/38 (52%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
+E + E E+EE +E++EE+++EE +
Sbjct: 286 QEMKRGGVPQGGGEAAASAEEEEDDEDDEEDDDEETLK 323
Score = 26.5 bits (59), Expect = 7.9
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 109 MIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEE 141
P+ E E+EE++E +EE++ EE +
Sbjct: 291 GGVPQGGGEAAASAEEEEDDEDDEEDDDEETLK 323
>gnl|CDD|225880 COG3343, RpoE, DNA-directed RNA polymerase, delta subunit
[Transcription].
Length = 175
Score = 27.4 bits (61), Expect = 2.4
Identities = 14/48 (29%), Positives = 33/48 (68%)
Query: 109 MIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
M + K+ + +D++ + EE +++E + E++EEEE++E + ++E +D
Sbjct: 94 MTEKKDIKAKDKEVDAFEEGDEDELDYDEDKEEEEDDEVDSLDDENDD 141
Score = 27.4 bits (61), Expect = 2.8
Identities = 14/43 (32%), Positives = 31/43 (72%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+ E + D+E ++E+E ++E + E++E +E+E+++E+EED
Sbjct: 129 DDEVDSLDDENDDEDEDDDEIVEILIEDDEVDEDEDDDEDEED 171
Score = 27.0 bits (60), Expect = 3.7
Identities = 14/38 (36%), Positives = 31/38 (81%)
Query: 119 DEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
DE+++++E++++ E E+ E +E+E+++E+EE+EED
Sbjct: 137 DENDDEDEDDDEIVEILIEDDEVDEDEDDDEDEEDEED 174
Score = 26.6 bits (59), Expect = 4.9
Identities = 14/39 (35%), Positives = 32/39 (82%)
Query: 117 EEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+E++DE+++++E E E +E +E+E+++E+EE+EE++
Sbjct: 137 DENDDEDEDDDEIVEILIEDDEVDEDEDDDEDEEDEEDK 175
Score = 25.9 bits (57), Expect = 8.4
Identities = 16/44 (36%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 114 EKEEEDEDEEQEEEE-EQEEEEEQEEQEEEEEEEEEEEEEEEED 156
EE DEDE +E+ E+EE++E + ++E ++E+E+++E E
Sbjct: 109 AFEEGDEDELDYDEDKEEEEDDEVDSLDDENDDEDEDDDEIVEI 152
Score = 25.9 bits (57), Expect = 8.6
Identities = 13/39 (33%), Positives = 29/39 (74%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
+E D+++E ++E + E+ E E+E+++E+EE+EE++
Sbjct: 137 DENDDEDEDDDEIVEILIEDDEVDEDEDDDEDEEDEEDK 175
>gnl|CDD|237496 PRK13766, PRK13766, Hef nuclease; Provisional.
Length = 773
Score = 27.9 bits (63), Expect = 2.4
Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 10/60 (16%)
Query: 107 FWMIKPKEK----------EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+W + KEK ++ ++ +EE++ EEEE++EQ ++ + + +EEEE+
Sbjct: 486 YWSSRRKEKKMKEELKNLKGILNKKLQELDEEQKGEEEEKDEQLSLDDFVKSKGKEEEEE 545
>gnl|CDD|237178 PRK12705, PRK12705, hypothetical protein; Provisional.
Length = 508
Score = 28.1 bits (63), Expect = 2.4
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 115 KEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRILI 161
++EE D E+ + E + E+ E+ E E EE E++ D+ +
Sbjct: 88 QKEEQLDARAEKLDNLENQLEEREKALSARELELEELEKQLDNELYR 134
>gnl|CDD|236277 PRK08493, PRK08493, NADH dehydrogenase subunit G; Validated.
Length = 819
Score = 28.1 bits (63), Expect = 2.4
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 119 DEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
E EE +E+ EQ EQ E +EE ++E ++
Sbjct: 461 KEAALSILEEIREKVLEQAEQGCENQEEVKKEVPKKV 497
Score = 27.7 bits (62), Expect = 3.2
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
K EE + +E EE ++ E+ E+ E +EE ++E
Sbjct: 449 LKSLEEFKQSIVKEAALSILEEIREKVLEQAEQGCENQEEVKKE 492
>gnl|CDD|240419 PTZ00440, PTZ00440, reticulocyte binding protein 2-like protein;
Provisional.
Length = 2722
Score = 28.3 bits (63), Expect = 2.4
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
E +E++ DEEQ ++QE +++EEQ+ +E E +D
Sbjct: 2585 ESETQEDNTDEEQINRQQQERLQKEEEQKAYSQERLNREVSGTDD 2629
Score = 27.1 bits (60), Expect = 6.3
Identities = 13/47 (27%), Positives = 27/47 (57%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
K +E+ E + E+ +EE+ ++++ Q+EEE++ +E E S
Sbjct: 2579 KERERIESETQEDNTDEEQINRQQQERLQKEEEQKAYSQERLNREVS 2625
>gnl|CDD|129310 TIGR00206, fliF, flagellar basal-body M-ring protein/flagellar
hook-basal body protein (fliF). Component of the M
(cytoplasmic associated) ring, one of four rings
(L,P,S,M) which make up the flagellar hook-basal body
which is a major portion of the flagellar organelle.
Although the basic structure of the flagella appears to
be similar for all bacteria, additional rings and
structures surrounding the basal body have been observed
for some bacteria (eg Vibrio cholerae and Treponema
pallidum) [Cellular processes, Chemotaxis and motility].
Length = 555
Score = 27.9 bits (62), Expect = 2.4
Identities = 11/45 (24%), Positives = 19/45 (42%)
Query: 109 MIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
+ + ++ EEQE+E E E + + E +EE E
Sbjct: 487 EREEELAKQAHLREEQEDEVEGELIKLDDLVGGINEGDEEVSNAE 531
Score = 26.4 bits (58), Expect = 7.8
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 117 EEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
EE+ ++ EEQE+E E E + ++ E +EE
Sbjct: 489 EEELAKQAHLREEQEDEVEGELIKLDDLVGGINEGDEE 526
>gnl|CDD|227519 COG5192, BMS1, GTP-binding protein required for 40S ribosome
biogenesis [Translation, ribosomal structure and
biogenesis].
Length = 1077
Score = 28.2 bits (62), Expect = 2.4
Identities = 11/41 (26%), Positives = 26/41 (63%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
KE+ ++ E++E+ E ++ +EEE ++E+E E+ + +
Sbjct: 1023 KERIKDQEEKERMESLQRAKEEEIGKKEKEREQRIRKTIHD 1063
Score = 27.0 bits (59), Expect = 6.4
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEE 152
E+ ++ D E E EE ++EE E EE + E+++
Sbjct: 631 EESADEVDYETEREENARKKEELRGNFELEERGDPEKKD 669
Score = 26.6 bits (58), Expect = 8.0
Identities = 15/43 (34%), Positives = 26/43 (60%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+EK E + +E ++QEE+E E + +EEE ++E+E E
Sbjct: 1012 REKHEIKDRIVKERIKDQEEKERMESLQRAKEEEIGKKEKERE 1054
>gnl|CDD|200340 TIGR03927, T7SS_EssA_Firm, type VII secretion protein EssA.
Members of this family are associated with type VII
secretion of WXG100 family targets in the Firmicutes,
but not in the Actinobacteria. This highly divergent
protein family consists largely of a central region of
highly polar low-complexity sequence containing
occasional LF motifs in weak repeats about 17 residues
in length, flanked by hydrophobic N- and C-terminal
regions [Protein fate, Protein and peptide secretion and
trafficking].
Length = 150
Score = 27.3 bits (61), Expect = 2.5
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
K+ E + D QEE E +E EEQ++ ++ +E+ E+EE
Sbjct: 33 KKDIEINTDYLQEETELDKELFTPEEQKKITFQKHKEKPEQEE 75
Score = 27.0 bits (60), Expect = 4.0
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
K E + EE E ++E EEQ++ ++ +E+ E+EE +
Sbjct: 34 KDIEINTDYLQEETELDKELFTPEEQKKITFQKHKEKPEQEELKNQL 80
>gnl|CDD|218010 pfam04293, SpoVR, SpoVR like protein. Bacillus subtilis stage V
sporulation protein R is involved in spore cortex
formation. Little is known about cortex biosynthesis,
except that it depends on several sigma E controlled
genes, including spoVR.
Length = 427
Score = 27.9 bits (63), Expect = 2.5
Identities = 10/48 (20%), Positives = 22/48 (45%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
K K +E++ ++EE E+ + + + + E+ EEE +
Sbjct: 170 KRPIKLSLEEEKARQEEREEYLQSQVNDLWRTIPPQREKLEEERARRK 217
Score = 27.5 bits (62), Expect = 3.7
Identities = 12/44 (27%), Positives = 20/44 (45%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
IK +EE+ EE+EE + + + + E+ EEE
Sbjct: 173 IKLSLEEEKARQEEREEYLQSQVNDLWRTIPPQREKLEEERARR 216
Score = 27.2 bits (61), Expect = 5.1
Identities = 13/51 (25%), Positives = 21/51 (41%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRIL 160
+P + E+E QEE EE + + + + E+ EEE R
Sbjct: 170 KRPIKLSLEEEKARQEEREEYLQSQVNDLWRTIPPQREKLEEERARRKRFP 220
>gnl|CDD|129416 TIGR00316, cdhC, CO dehydrogenase/CO-methylating acetyl-CoA
synthase complex, beta subunit. Nomenclature follows
the description for Methanosarcina thermophila. The
CO-methylating acetyl-CoA synthase is considered the
defining enzyme of the Wood-Ljungdahl pathway, used for
acetate catabolism by sulfate reducing bacteria but for
acetate biosynthesis by acetogenic bacteria such as
oorella thermoacetica (f. Clostridium thermoaceticum)
[Energy metabolism, Chemoautotrophy].
Length = 458
Score = 27.9 bits (62), Expect = 2.5
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 129 EQEEEEEQEEQEEEEEEEEEEEEEEEE 155
++ E EE+ EEEEE + EE E E
Sbjct: 397 KRVVREVDEEEIEEEEEAMQPEEMEME 423
Score = 27.5 bits (61), Expect = 3.2
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEE 147
KEK E +E+E EEE+E + EE E E
Sbjct: 389 KEKGHPVVKRVVREVDEEEIEEEEEAMQPEEMEME 423
Score = 27.5 bits (61), Expect = 3.7
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 128 EEQEEEEEQEEQEEEEEEEEEEEEEEE 154
+ E ++EE EEEEE + EE E E
Sbjct: 397 KRVVREVDEEEIEEEEEAMQPEEMEME 423
Score = 27.5 bits (61), Expect = 4.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 122 EEQEEEEEQEEEEEQEEQEEEEEEEEE 148
+ E ++EE EE+EE + EE E E
Sbjct: 397 KRVVREVDEEEIEEEEEAMQPEEMEME 423
Score = 26.7 bits (59), Expect = 5.6
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 115 KEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEE 149
KE+ ++ E EEE E+EE+ + EE E E
Sbjct: 389 KEKGHPVVKRVVREVDEEEIEEEEEAMQPEEMEME 423
Score = 26.7 bits (59), Expect = 6.1
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQE 140
+K +E ++E+ E+EEE Q EE E E E
Sbjct: 396 VKRVVREVDEEEIEEEEEAMQPEEMEMEGFE 426
Score = 26.7 bits (59), Expect = 7.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEE 141
E DE+E +EEEE + EE + E E
Sbjct: 401 REVDEEEIEEEEEAMQPEEMEMEGFE 426
>gnl|CDD|172358 PRK13831, PRK13831, conjugal transfer protein TrbI; Provisional.
Length = 432
Score = 27.8 bits (62), Expect = 2.6
Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 14/84 (16%)
Query: 77 QLVEGKPNGLLCVLDDQANWSRGNPMVSCVFWMIKPKEKEEEDEDEEQEEEEEQEEEEEQ 136
QL G +G++ G P F +P E + E++ Q + E+
Sbjct: 72 QLKRGVTDGII-----------GEPQQQQTF---QPTPVETQQEEKAVNPFTPQPGQREE 117
Query: 137 EEQEEEEEEEEEEEEEEEEDSRIL 160
E EEE + E++ + L
Sbjct: 118 RRPTLESEEEWRARLKREQEEQYL 141
>gnl|CDD|179525 PRK03003, PRK03003, GTP-binding protein Der; Reviewed.
Length = 472
Score = 28.0 bits (63), Expect = 2.6
Identities = 8/35 (22%), Positives = 16/35 (45%)
Query: 118 EDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEE 152
+D++ E + +E + E +E+ E E E
Sbjct: 2 DDDEAEMRADGTWADESDWELDDEDLAELEAAEGG 36
>gnl|CDD|227356 COG5023, COG5023, Tubulin [Cytoskeleton].
Length = 443
Score = 27.7 bits (62), Expect = 2.6
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 115 KEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
E +E E E E+ + EE+ E E++ ++EE+EEE
Sbjct: 403 GEGMEEGEFSEAREDVADLEEEYEAAEQDSYLDDEEDEEEM 443
Score = 27.7 bits (62), Expect = 2.6
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
E EE E E E+ EEE + +++ ++EE+EEE
Sbjct: 403 GEGMEEGEFSEAREDVADLEEEYEAAEQDSYLDDEEDEEEM 443
Score = 26.6 bits (59), Expect = 6.8
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 115 KEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
E E+ E E E + E+E + E++ ++EE+EEE
Sbjct: 402 VGEGMEEGEFSEAREDVADLEEEYEAAEQDSYLDDEEDEEEM 443
>gnl|CDD|222440 pfam13897, GOLD_2, Golgi-dynamics membrane-trafficking. Sec14-like
Golgi-trafficking domain The GOLD domain is always found
combined with lipid- or membrane-association domains.
Length = 136
Score = 27.3 bits (61), Expect = 2.6
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 129 EQEEEEEQEEQEEEEEEEEEEEEEEEEDSRILI 161
E +EEE+EE EEEE E + E + SR L+
Sbjct: 53 ESSDEEEEEEAEEEEAETGDVEAGSKSQSRPLV 85
>gnl|CDD|235285 PRK04335, PRK04335, cell division protein ZipA; Provisional.
Length = 313
Score = 27.8 bits (62), Expect = 2.7
Identities = 12/48 (25%), Positives = 22/48 (45%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
+ + + ++ E Q EE EE E+ E + E + EEE + +
Sbjct: 116 AQSQPQPEKVEPQVEEPRDEEVLEEPEPVAAKVPMAEVQPEEETEIEV 163
Score = 26.7 bits (59), Expect = 5.8
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
+E + E E+ + + + + E+ E + EE +EE EE E
Sbjct: 101 EEDKFEQEEAPIPVQAQSQPQPEKVEPQVEEPRDEEVLEEPE 142
Score = 26.7 bits (59), Expect = 7.0
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
E+EE+ ++E+ Q + + Q E+ E + EE +EE EE
Sbjct: 97 ELEEEEDKFEQEEAPIPVQAQSQPQPEKVEPQVEEPRDEEVLEEP 141
Score = 26.3 bits (58), Expect = 9.5
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 112 PKEKEEEDEDEE---QEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
P+++E +E E + E + EEE E + +E EE + E E +
Sbjct: 132 PRDEEVLEEPEPVAAKVPMAEVQPEEETEIEVDEPEEPKPEPELD 176
>gnl|CDD|218688 pfam05680, ATP-synt_E, ATP synthase E chain. This family consists
of several ATP synthase E chain sequences which are
components of the CF(0) subunit.
Length = 83
Score = 26.7 bits (59), Expect = 2.7
Identities = 6/38 (15%), Positives = 21/38 (55%)
Query: 107 FWMIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEE 144
+K KE++ + + +++ E+ + +++Q ++E
Sbjct: 29 QRSLKKKEEKIREYEAQEKLIEKAKAAYAKKKQAKQEA 66
Score = 25.5 bits (56), Expect = 6.3
Identities = 6/36 (16%), Positives = 22/36 (61%)
Query: 122 EEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+++EE+ + E +E+ ++ + ++++ ++E S
Sbjct: 33 KKKEEKIREYEAQEKLIEKAKAAYAKKKQAKQEAKS 68
>gnl|CDD|216194 pfam00922, Phosphoprotein, Vesiculovirus phosphoprotein.
Length = 283
Score = 27.6 bits (61), Expect = 2.7
Identities = 13/43 (30%), Positives = 18/43 (41%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
E EE+ D+ +E+ EE EE + E E ED
Sbjct: 22 EMEEQRADKSSTFQEDSVEEHTSPSYYLAEELSDSETEPSIED 64
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau;
Validated.
Length = 824
Score = 28.0 bits (63), Expect = 2.7
Identities = 8/47 (17%), Positives = 12/47 (25%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
P + + Q EEEE E+D+
Sbjct: 745 PDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAP 791
Score = 27.3 bits (61), Expect = 4.0
Identities = 7/45 (15%), Positives = 11/45 (24%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
P + EEEE E++ +D
Sbjct: 751 PAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAPSMDD 795
>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen;
Provisional.
Length = 1136
Score = 27.8 bits (61), Expect = 2.7
Identities = 19/43 (44%), Positives = 25/43 (58%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
E+ EE+ +E EE E+ EE EE EE ++E EE EE D
Sbjct: 1093 EEIEENVEENVEENAEENAEENAEENAEEYDDENPEEHNEEYD 1135
Score = 27.4 bits (60), Expect = 4.4
Identities = 20/44 (45%), Positives = 25/44 (56%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+E EE+ +E EE EE EE +E EE EE EE EE +D
Sbjct: 1081 EENVEENVEENVEEIEENVEENVEENAEENAEENAEENAEEYDD 1124
Score = 26.7 bits (58), Expect = 8.5
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
+E EE+ +E EE E+ EE EE ++E EE EE +E
Sbjct: 1096 EENVEENVEENAEENAEENAEENAEEYDDENPEEHNEEYDE 1136
>gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein. Hsp70 chaperones help to fold
many proteins. Hsp70 assisted folding involves repeated
cycles of substrate binding and release. Hsp70 activity
is ATP dependent. Hsp70 proteins are made up of two
regions: the amino terminus is the ATPase domain and the
carboxyl terminus is the substrate binding region.
Length = 598
Score = 28.0 bits (63), Expect = 2.8
Identities = 7/39 (17%), Positives = 18/39 (46%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEE 151
++K ++E + ++ EE E+++ +E E
Sbjct: 490 EQKITITASSGLSDDEIERMVKDAEEYAAEDKKRKERIE 528
Score = 27.2 bits (61), Expect = 4.9
Identities = 9/48 (18%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 113 KEKEEEDEDEEQEEEEE--QEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
K+K E + ++E E+ ++ EE E+++ +E +++
Sbjct: 483 KDKGTGKEQKITITASSGLSDDEIERMVKDAEEYAAEDKKRKERIEAK 530
Score = 26.4 bits (59), Expect = 8.5
Identities = 9/34 (26%), Positives = 19/34 (55%)
Query: 119 DEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEE 152
+DE + ++ EE ++++ +E E + E EE
Sbjct: 502 SDDEIERMVKDAEEYAAEDKKRKERIEAKNEAEE 535
>gnl|CDD|183955 PRK13292, PRK13292, trifunctional NADH dehydrogenase I subunit
B/C/D; Provisional.
Length = 788
Score = 27.8 bits (62), Expect = 2.8
Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 6/30 (20%)
Query: 84 NGLLCVLDDQANWSRGN---PM---VSCVF 107
N LL LDD NW R N PM +SC F
Sbjct: 6 NILLASLDDLINWGRANSLWPMFFGLSCCF 35
>gnl|CDD|234504 TIGR04216, halo_surf_glyco, major cell surface glycoprotein.
Members of this family are the S-layer-forming
halobacterial major cell surface glycoprotein. The
highest scores below model cutoffs are fragmentary
paralogs to actual members of the family. Modifications
include at N-linked and O-linked glycosylation, a
C-terminal diphytanylglyceryl modification, and probable
cleavage of the PGF-CTERM tail.
Length = 782
Score = 27.9 bits (62), Expect = 2.8
Identities = 9/43 (20%), Positives = 13/43 (30%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
E E D ++ E+ E E EE E+
Sbjct: 710 ETERPDTTTSEDPTTTTTPTTTGPEETTETAEPTTTTEEPTEE 752
Score = 27.9 bits (62), Expect = 3.1
Identities = 10/42 (23%), Positives = 11/42 (26%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
E E D E+ EE E E EE
Sbjct: 710 ETERPDTTTSEDPTTTTTPTTTGPEETTETAEPTTTTEEPTE 751
Score = 26.4 bits (58), Expect = 10.0
Identities = 16/93 (17%), Positives = 31/93 (33%), Gaps = 8/93 (8%)
Query: 71 DNTLCLQLVEGKPNGLLCVLDDQANW-SRGNPMVSCVFWMIKPKEKEEEDEDEEQEEEE- 128
DNT+ ++L+ + L+ W S G V ++ E +D + +
Sbjct: 647 DNTITVELLNEDDTSV--TLESTDEWNSDGQWSVEVDLSDVETGNYTVEADDGDNTDRVN 704
Query: 129 ----EQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
E+ E + E+ EE +
Sbjct: 705 VEVVEETERPDTTTSEDPTTTTTPTTTGPEETT 737
>gnl|CDD|221323 pfam11931, DUF3449, Domain of unknown function (DUF3449). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is typically
between 181 to 207 amino acids in length. This domain
has two conserved sequence motifs: PIP and CEICG. The
domain carries a zinc-finger domain of the C2H2-type.
Length = 187
Score = 27.2 bits (61), Expect = 2.9
Identities = 8/37 (21%), Positives = 24/37 (64%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEE 150
E+++ +EE++ ++ E+ E+ +++ +++EEE
Sbjct: 26 ERKQALTEEERQASADESSEDASEDGSDDDSDDDEEE 62
Score = 26.8 bits (60), Expect = 5.0
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 126 EEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
EEE Q +E E E+ +++ +++EEE
Sbjct: 33 EEERQASADESSEDASEDGSDDDSDDDEEEP 63
Score = 26.5 bits (59), Expect = 5.6
Identities = 6/31 (19%), Positives = 20/31 (64%)
Query: 127 EEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
EEE++ ++ ++ E+ +++ +++EE+
Sbjct: 33 EEERQASADESSEDASEDGSDDDSDDDEEEP 63
Score = 26.1 bits (58), Expect = 9.0
Identities = 8/37 (21%), Positives = 20/37 (54%)
Query: 120 EDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
E+E Q +E E+ ++ +++ +++EEE +
Sbjct: 33 EEERQASADESSEDASEDGSDDDSDDDEEEPIYNPLN 69
>gnl|CDD|221466 pfam12220, U1snRNP70_N, U1 small nuclear ribonucleoprotein of 70kDa
MW N terminal. This domain is found in eukaryotes. This
domain is about 90 amino acids in length. This domain is
found associated with pfam00076. This domain is part of
U1 snRNP, which is the pre-mRNA binding protein of the
penta-snRNP spliceosome complex. It extends over a
distance of 180 A from its RNA binding domain, wraps
around the core domain of U1 snRNP consisting of the
seven Sm proteins and finally contacts U1-C, which is
crucial for 5'-splice-site recognition.
Length = 94
Score = 26.5 bits (59), Expect = 2.9
Identities = 14/40 (35%), Positives = 26/40 (65%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEE 152
K+ ++E E E E+ E E++E++E+ E++ EEE +E
Sbjct: 48 KDYKDEPPPEPTETWLEKREREKREKKEKLEKKLEEELKE 87
>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein. Function of MutS2 is
unknown. It should not be considered a DNA mismatch
repair protein. It is likely a DNA mismatch binding
protein of unknown cellular function [DNA metabolism,
Other].
Length = 771
Score = 27.9 bits (62), Expect = 3.0
Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
Query: 113 KEKEEEDEDEEQE----EEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
EKE E ++E E E+E+ ++E EQE +E +E E ++ E E+E
Sbjct: 523 LEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKE 569
>gnl|CDD|225281 COG2425, COG2425, Uncharacterized protein containing a von
Willebrand factor type A (vWA) domain [General function
prediction only].
Length = 437
Score = 27.7 bits (62), Expect = 3.0
Identities = 14/44 (31%), Positives = 19/44 (43%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
E+ EE + Q E E E E+E E++EE E E
Sbjct: 109 LERWEELLQDLQREGSEDFLEGEREGLLSEKQEEISLSGEMEGI 152
>gnl|CDD|219572 pfam07780, Spb1_C, Spb1 C-terminal domain. This presumed domain is
found at the C-terminus of a family of FtsJ-like
methyltransferases. Members of this family are involved
in 60S ribosomal biogenesis.
Length = 212
Score = 27.3 bits (61), Expect = 3.1
Identities = 8/40 (20%), Positives = 24/40 (60%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEE 151
+ +E+DE E EE++++ ++ E+ ++++ ++ E
Sbjct: 1 ESKSDEDDEFEVVPAEEDEKKVDKDEDDDKDDIDDLTAEA 40
Score = 26.9 bits (60), Expect = 4.3
Identities = 9/40 (22%), Positives = 25/40 (62%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEE 152
+ K +ED++ E EE E++ +++E +++++ ++ E
Sbjct: 1 ESKSDEDDEFEVVPAEEDEKKVDKDEDDDKDDIDDLTAEA 40
Score = 26.5 bits (59), Expect = 7.0
Identities = 9/40 (22%), Positives = 26/40 (65%)
Query: 115 KEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
+ + DED+E E +E+E++ ++ E++++++ ++ E
Sbjct: 1 ESKSDEDDEFEVVPAEEDEKKVDKDEDDDKDDIDDLTAEA 40
>gnl|CDD|235378 PRK05256, PRK05256, condesin subunit E; Provisional.
Length = 238
Score = 27.3 bits (61), Expect = 3.2
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 129 EQEEEEEQEEQEEEEEEEEEEEEEE 153
E ++E +E EEE+ +EEEEE
Sbjct: 214 ENHLQQESSLNDETEEEQPDEEEEE 238
Score = 26.9 bits (60), Expect = 5.3
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 123 EQEEEEEQEEEEEQEEQEEEEEEEE 147
E ++E +E EE++ +EEEEE
Sbjct: 214 ENHLQQESSLNDETEEEQPDEEEEE 238
Score = 26.1 bits (58), Expect = 8.1
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 131 EEEEEQEEQEEEEEEEEEEEEEEEE 155
E +QE +E EEE+ +EEEEE
Sbjct: 214 ENHLQQESSLNDETEEEQPDEEEEE 238
Score = 26.1 bits (58), Expect = 8.4
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 126 EEEEQEEEEEQEEQEEEEEEEEEEE 150
E Q+E +E EEE+ +EEEEE
Sbjct: 214 ENHLQQESSLNDETEEEQPDEEEEE 238
>gnl|CDD|224712 COG1799, COG1799, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 167
Score = 27.4 bits (61), Expect = 3.2
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEE 147
+DE++ EE+ QE + E EE +
Sbjct: 15 PLDDEEDYYEEDPRQEPRDPAVEPEEYAPPKY 46
Score = 26.2 bits (58), Expect = 7.7
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 123 EQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
++EE+ EE+ ++E + E EE +
Sbjct: 15 PLDDEEDYYEEDPRQEPRDPAVEPEEYAPPKY 46
Score = 25.8 bits (57), Expect = 8.5
Identities = 8/41 (19%), Positives = 18/41 (43%)
Query: 117 EEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
D++E+ EE+ ++E + + EE + + E
Sbjct: 15 PLDDEEDYYEEDPRQEPRDPAVEPEEYAPPKYNFRKREPAR 55
>gnl|CDD|220149 pfam09234, DUF1963, Domain of unknown function (DUF1963). This
domain is found in a set of hypothetical bacterial
proteins. Its exact function has not, as yet, been
described.
Length = 221
Score = 27.3 bits (61), Expect = 3.2
Identities = 26/123 (21%), Positives = 43/123 (34%), Gaps = 15/123 (12%)
Query: 40 HLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANWSRG 99
LQ++ + + ++ G R + E L D ++S
Sbjct: 47 ILQFFIDLDDDDWGDSPEDQTGFRVIYFEDIIE-------------DLLPKDLIEDFSFL 93
Query: 100 NPMVSCVFWMIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEE--EEEEEEEEEDS 157
+ K E ED+ E+E + E E EE++EE EE +E EE
Sbjct: 94 KAPFEGELKLPFEKSDEPISEDDYSFEQEYESEILELEEEDEELIEELYDEITEEGSNFH 153
Query: 158 RIL 160
+I
Sbjct: 154 KIG 156
>gnl|CDD|237205 PRK12792, flhA, flagellar biosynthesis protein FlhA; Reviewed.
Length = 694
Score = 27.8 bits (62), Expect = 3.3
Identities = 7/40 (17%), Positives = 17/40 (42%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEE 151
P+ + E + + E+E + + + +E+ E E
Sbjct: 324 PRRRAARAAAEAAKVKREEESAQAEAKDSVKEQLRTAEIE 363
>gnl|CDD|217956 pfam04194, PDCD2_C, Programmed cell death protein 2, C-terminal
putative domain.
Length = 165
Score = 27.0 bits (60), Expect = 3.4
Identities = 15/50 (30%), Positives = 25/50 (50%)
Query: 106 VFWMIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+ P+E+E E EE +E E + E+ E+E +E+EE +E
Sbjct: 2 DSQFVFPEEEEYETLHAPSLPEEPEEREIDAFEELEKEGGGGKEDEETDE 51
>gnl|CDD|225887 COG3351, FlaD, Putative archaeal flagellar protein D/E [Cell
motility and secretion].
Length = 214
Score = 27.1 bits (60), Expect = 3.4
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 115 KEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
K +++ EE E EQ +E E+ + EEE E+E+
Sbjct: 36 KSDDELVEELPERYEQTKENSLIEKVDSIEEEISEKEKV 74
>gnl|CDD|215283 PLN02518, PLN02518, pheophorbide a oxygenase.
Length = 539
Score = 27.5 bits (61), Expect = 3.5
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 125 EEEEEQEEEEEQEEQEEEEEEEEEEE 150
E +Q+E EEQ ++E +E + +
Sbjct: 59 EAALQQDEGEEQRVEQELGQESSDSK 84
Score = 26.8 bits (59), Expect = 5.8
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 133 EEEQEEQEEEEEEEEEEEEEEEEDSR 158
E ++ E EE+ E+E +E DS+
Sbjct: 59 EAALQQDEGEEQRVEQELGQESSDSK 84
Score = 26.4 bits (58), Expect = 8.8
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 126 EEEEQEEEEEQEEQEEEEEEEEEEEE 151
E Q++E E++ E+E +E + +
Sbjct: 59 EAALQQDEGEEQRVEQELGQESSDSK 84
>gnl|CDD|111875 pfam03032, Brevenin, Brevenin/esculentin/gaegurin/rugosin family.
This family contains a number of defence peptides
secreted from the skin of amphibians, including the
opiate-like dermorphins and deltorphins, and the
antimicrobial dermoseptins and temporins. The alignment
for this family includes the signal peptide.
Length = 46
Score = 25.4 bits (56), Expect = 3.6
Identities = 14/24 (58%), Positives = 20/24 (83%)
Query: 120 EDEEQEEEEEQEEEEEQEEQEEEE 143
E+E++E+EEE E+EEE EEQ E +
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
Score = 24.2 bits (53), Expect = 9.0
Identities = 14/23 (60%), Positives = 17/23 (73%)
Query: 133 EEEQEEQEEEEEEEEEEEEEEEE 155
EEE+ E EEE E+EEE EE+ E
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEV 44
Score = 24.2 bits (53), Expect = 9.5
Identities = 13/24 (54%), Positives = 20/24 (83%)
Query: 126 EEEEQEEEEEQEEQEEEEEEEEEE 149
EEE++E+EEE E++EE EE+ E +
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
>gnl|CDD|218328 pfam04921, XAP5, XAP5, circadian clock regulator. This protein is
found in a wide range of eukaryotes. It is a nuclear
protein and is suggested to be DNA binding. In plants,
this family is essential for correct circadian clock
functioning by acting as a light-quality regulator
coordinating the activities of blue and red light
signalling pathways during plant growth - inhibiting
growth in red light but promoting growth in blue light.
Length = 233
Score = 27.3 bits (61), Expect = 3.6
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 100 NPMVSCVFWMIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEE 143
NP V F K +E++E E EE +E ++QE +EEE
Sbjct: 53 NPSVDTSFLPDKAREEKEA----ELREELREEFLKKQEAVKEEE 92
Score = 26.5 bits (59), Expect = 5.9
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 121 DEEQEEEEEQEEEEEQEEQEEEEEEEEEEE 150
D+ +EE+E + EE +EE +++E +EEE
Sbjct: 63 DKAREEKEAELREELREEFLKKQEAVKEEE 92
Score = 26.2 bits (58), Expect = 7.2
Identities = 9/28 (32%), Positives = 20/28 (71%)
Query: 119 DEDEEQEEEEEQEEEEEQEEQEEEEEEE 146
+D+E+E+E+E E+E++ ++ E +E
Sbjct: 14 GDDDEEEDEDEGEDEKKVPKESSEPDEA 41
Score = 26.2 bits (58), Expect = 9.4
Identities = 9/28 (32%), Positives = 19/28 (67%)
Query: 131 EEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
++EEE E++ E+E++ +E E +E +
Sbjct: 16 DDEEEDEDEGEDEKKVPKESSEPDEANV 43
>gnl|CDD|223363 COG0286, HsdM, Type I restriction-modification system
methyltransferase subunit [Defense mechanisms].
Length = 489
Score = 27.4 bits (61), Expect = 3.7
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
E+EEED D ++ +E E + E E E+E EE +E +
Sbjct: 446 VAEEEEEDIDLDELLQELSEIDAELAELEKELEEILKELLLNLK 489
>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit
RPA34.5. This is a family of proteins conserved from
yeasts to human. Subunit A34.5 of RNA polymerase I is a
non-essential subunit which is thought to help Pol I
overcome topological constraints imposed on ribosomal
DNA during the process of transcription.
Length = 193
Score = 27.0 bits (60), Expect = 3.8
Identities = 12/38 (31%), Positives = 15/38 (39%)
Query: 121 DEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
E E E E+E + E+E E EEEE
Sbjct: 119 GAPDGPPSELGSESETSEKETTAKVEKEAEVEEEEKKE 156
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated.
Length = 646
Score = 27.6 bits (62), Expect = 3.9
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRIL 160
K + +E + EEE ++ E+E +E EEE E E E +E E++ L
Sbjct: 76 KKKVSVKSLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEIERL 126
>gnl|CDD|224273 COG1354, scpA, Rec8/ScpA/Scc1-like protein (kleisin family)
[Replication, recombination, and repair].
Length = 248
Score = 27.3 bits (61), Expect = 3.9
Identities = 17/46 (36%), Positives = 23/46 (50%)
Query: 115 KEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRIL 160
KEEE+ ++E+ EE E EE E +E E E EEE +
Sbjct: 77 KEEEEAEDEELEEPRDELVARLEEYERYKEAAELLAELEEERRDVF 122
>gnl|CDD|184886 PRK14892, PRK14892, putative transcription elongation factor Elf1;
Provisional.
Length = 99
Score = 26.2 bits (58), Expect = 4.0
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 135 EQEEQEEEEEEEEEEEEEEEE 155
E +E++ EE EEE E E E E
Sbjct: 79 EIKERKNEETEEENEIEGESE 99
>gnl|CDD|107059 PHA01746, PHA01746, hypothetical protein.
Length = 131
Score = 26.8 bits (59), Expect = 4.0
Identities = 13/35 (37%), Positives = 24/35 (68%)
Query: 118 EDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEE 152
+ + QEEE++ E++EE+EE+ E+ ++ EEE
Sbjct: 96 RNNNAIQEEEDDMEQQEEKEEKGREKGRKKNVEEE 130
Score = 25.7 bits (56), Expect = 8.0
Identities = 14/29 (48%), Positives = 23/29 (79%)
Query: 115 KEEEDEDEEQEEEEEQEEEEEQEEQEEEE 143
+EEED+ E+QEE+EE+ E+ +++ EEE
Sbjct: 102 QEEEDDMEQQEEKEEKGREKGRKKNVEEE 130
>gnl|CDD|100108 cd04411, Ribosomal_P1_P2_L12p, Ribosomal protein P1, P2, and L12p.
Ribosomal proteins P1 and P2 are the eukaryotic proteins
that are functionally equivalent to bacterial L7/L12.
L12p is the archaeal homolog. Unlike other ribosomal
proteins, the archaeal L12p and eukaryotic P1 and P2 do
not share sequence similarity with their bacterial
counterparts. They are part of the ribosomal stalk
(called the L7/L12 stalk in bacteria), along with 28S
rRNA and the proteins L11 and P0 in eukaryotes (23S
rRNA, L11, and L10e in archaea). In bacterial ribosomes,
L7/L12 homodimers bind the extended C-terminal helix of
L10 to anchor the L7/L12 molecules to the ribosome.
Eukaryotic P1/P2 heterodimers and archaeal L12p
homodimers are believed to bind the L10 equivalent
proteins, eukaryotic P0 and archaeal L10e, in a similar
fashion. P1 and P2 (L12p, L7/L12) are the only proteins
in the ribosome to occur as multimers, always appearing
as sets of dimers. Recent data indicate that most
archaeal species contain six copies of L12p (three
homodimers), while eukaryotes have two copies each of P1
and P2 (two heterodimers). Bacteria may have four or six
copies (two or three homodimers), depending on the
species. As in bacteria, the stalk is crucial for
binding of initiation, elongation, and release factors
in eukaryotes and archaea.
Length = 105
Score = 26.5 bits (58), Expect = 4.0
Identities = 13/20 (65%), Positives = 16/20 (80%)
Query: 137 EEQEEEEEEEEEEEEEEEED 156
E E+ EE +EEEEEEE+ED
Sbjct: 80 EPAEKAEEAKEEEEEEEDED 99
Score = 26.1 bits (57), Expect = 5.9
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 134 EEQEEQEEEEEEEEEEEEEEEED 156
E E+ EE +EEEEEEE+E+
Sbjct: 79 AEPAEKAEEAKEEEEEEEDEDFG 101
>gnl|CDD|221668 pfam12619, MCM2_N, Mini-chromosome maintenance protein 2. This
domain family is found in eukaryotes, and is typically
between 138 and 153 amino acids in length. The family is
found in association with pfam00493. Mini-chromosome
maintenance (MCM) proteins are essential for DNA
replication. These proteins use ATPase activity to
perform this function.
Length = 145
Score = 26.9 bits (60), Expect = 4.0
Identities = 13/29 (44%), Positives = 22/29 (75%)
Query: 126 EEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
E+E EEEE +++ ++ +EE EEEE+ E+
Sbjct: 1 EDEPDEEEELEDDIDDLDEEAEEEEDGED 29
Score = 26.5 bits (59), Expect = 4.3
Identities = 13/29 (44%), Positives = 22/29 (75%)
Query: 120 EDEEQEEEEEQEEEEEQEEQEEEEEEEEE 148
EDE EEEE +++ ++ +E+ EEEE+ E+
Sbjct: 1 EDEPDEEEELEDDIDDLDEEAEEEEDGED 29
Score = 26.5 bits (59), Expect = 5.4
Identities = 13/29 (44%), Positives = 22/29 (75%)
Query: 123 EQEEEEEQEEEEEQEEQEEEEEEEEEEEE 151
E E +EE+E E++ ++ +EE EEEE+ E+
Sbjct: 1 EDEPDEEEELEDDIDDLDEEAEEEEDGED 29
Score = 26.1 bits (58), Expect = 5.8
Identities = 13/29 (44%), Positives = 22/29 (75%)
Query: 128 EEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
E++ +EEE+ E + ++ +EE EEEE+ ED
Sbjct: 1 EDEPDEEEELEDDIDDLDEEAEEEEDGED 29
Score = 26.1 bits (58), Expect = 6.4
Identities = 14/29 (48%), Positives = 22/29 (75%)
Query: 127 EEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
E+E +EEEE E+ ++ +EE EEEE+ E+
Sbjct: 1 EDEPDEEEELEDDIDDLDEEAEEEEDGED 29
Score = 26.1 bits (58), Expect = 7.2
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 125 EEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
E+E ++EEE E + + +EE EEEE+ E+
Sbjct: 1 EDEPDEEEELEDDIDDLDEEAEEEEDGED 29
>gnl|CDD|234655 PRK00133, metG, methionyl-tRNA synthetase; Reviewed.
Length = 673
Score = 27.4 bits (62), Expect = 4.3
Identities = 7/37 (18%), Positives = 11/37 (29%), Gaps = 1/37 (2%)
Query: 118 EDED-EEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
ED+ E E ++ + EE E
Sbjct: 531 EDKQIEALIEASKEAAAAKAAAAAAAAPLAEEPIAET 567
Score = 26.3 bits (59), Expect = 8.5
Identities = 8/36 (22%), Positives = 12/36 (33%)
Query: 120 EDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
ED++ E E +E + EE E
Sbjct: 531 EDKQIEALIEASKEAAAAKAAAAAAAAPLAEEPIAE 566
>gnl|CDD|233224 TIGR00993, 3a0901s04IAP86, chloroplast protein import component
Toc86/159, G and M domains. The long precursor of the
86K protein originally described is proposed to have
three domains. The N-terminal A-domain is acidic,
repetitive, weakly conserved, readily removed by
proteolysis during chloroplast isolation, and not
required for protein translocation. The other domains
are designated G (GTPase) and M (membrane anchor); this
family includes most of the G domain and all of M
[Transport and binding proteins, Amino acids, peptides
and amines].
Length = 763
Score = 27.2 bits (60), Expect = 4.4
Identities = 13/54 (24%), Positives = 29/54 (53%)
Query: 97 SRGNPMVSCVFWMIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEE 150
SR P+ + W+++ + + E + +EE+ E E+ + +EE E+E ++
Sbjct: 356 SRAPPLPYLLSWLLQSRAHPKLPEQQGGDEEDSDIELEDSSDSDEESGEDEYDQ 409
>gnl|CDD|213395 cd12152, F1-ATPase_delta, mitochondrial ATP synthase delta subunit.
The F-ATPase is found in bacterial plasma membranes,
mitochondrial inner membranes and in chloroplast
thylakoid membranes. It has also been found in the
archaea Methanosarcina barkeri. It uses a proton
gradient to drive ATP synthesis and hydrolyzes ATP to
build the proton gradient. The extrinisic membrane
domain, F1, is composed of alpha, beta, gamma, delta,
and epsilon subunits with a stoichiometry of 3:3:1:1:1.
Alpha and beta subunit form the globular catalytic
moiety, a hexameric ring of alternating subunits. Gamma,
delta and epsilon subunits form a stalk, connecting F1
to F0, the integral membrane proton translocating
domain. In bacteria, which is lacking a eukaryotic
epsilon subunit homolog, this subunit is called the
epsilon subunit.
Length = 123
Score = 26.3 bits (59), Expect = 4.5
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEE 149
E+ D + +E E EE Q + E E+ E
Sbjct: 84 EDIDVERAEEALERAEERLAQAKDEREKARAEAA 117
Score = 25.6 bits (57), Expect = 7.7
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 118 EDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEE 151
ED D E+ EE + EE + ++E E+ E
Sbjct: 84 EDIDVERAEEALERAEERLAQAKDEREKARAEAA 117
>gnl|CDD|150531 pfam09871, DUF2098, Uncharacterized protein conserved in archaea
(DUF2098). This domain, found in various hypothetical
prokaryotic proteins, has no known function.
Length = 91
Score = 26.1 bits (58), Expect = 4.5
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEE 146
K KEK+EE E++++E E ++EEE E +
Sbjct: 51 KVKEKKEEREEDKEELIERIKKEEETFEDVDLGSAG 86
Score = 25.7 bits (57), Expect = 5.5
Identities = 12/35 (34%), Positives = 24/35 (68%)
Query: 123 EQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
++ +E+++E EE++EE E ++EEE E+ + S
Sbjct: 50 DKVKEKKEEREEDKEELIERIKKEEETFEDVDLGS 84
Score = 25.0 bits (55), Expect = 9.0
Identities = 10/38 (26%), Positives = 23/38 (60%)
Query: 120 EDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+ ++++EE +E++EE E+ ++EEE E+ +
Sbjct: 50 DKVKEKKEEREEDKEELIERIKKEEETFEDVDLGSAGC 87
>gnl|CDD|235668 PRK06007, fliF, flagellar MS-ring protein; Reviewed.
Length = 542
Score = 27.2 bits (61), Expect = 4.6
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
E E D+E+ EEE+ EEE + E+ + E +E+ EE
Sbjct: 492 EVELSDDEELEEEKAEEELKYEDLLKRLRELAKEDPEE 529
>gnl|CDD|189762 pfam00901, Orbi_VP5, Orbivirus outer capsid protein VP5.
cryoelectron microscopy indicates that VP5 is a trimer
implying that there are 360 copies of VP5 per virion.
Length = 507
Score = 27.3 bits (61), Expect = 4.6
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 7/49 (14%)
Query: 115 KEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEE-------EEEEEEEEED 156
K +E E E++EEE ++ ++ E+ E+ EE E + EEEEE
Sbjct: 92 KLKELEREQKEEEVREKHNKKIIEKFGEDLEEVYKFMKGEAKVEEEEEK 140
Score = 26.2 bits (58), Expect = 9.3
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 7/50 (14%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEE-------EEEEEEEEEEE 155
K KE E E +E+E E+ ++ ++ E+ EE E + EEEEE++
Sbjct: 92 KLKELEREQKEEEVREKHNKKIIEKFGEDLEEVYKFMKGEAKVEEEEEKQ 141
>gnl|CDD|235850 PRK06669, fliH, flagellar assembly protein H; Validated.
Length = 281
Score = 26.9 bits (60), Expect = 4.6
Identities = 19/44 (43%), Positives = 26/44 (59%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
KE+E EE+EE+ EQ EE +E +E EE EE+ E E +
Sbjct: 32 IKEKERLREEEEEQVEQLREEANDEAKEIIEEAEEDAFEIVEAA 75
Score = 26.9 bits (60), Expect = 5.2
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRILI 161
EE DE +E EE EE+ + + EEE +EE ++ +E S I+
Sbjct: 50 REEANDEAKEIIEEAEEDAFEIVEAAEEEAKEELLKKTDEASSIIE 95
Score = 26.5 bits (59), Expect = 6.5
Identities = 15/50 (30%), Positives = 30/50 (60%)
Query: 109 MIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
+++ E+E ++E ++ +E E+ Q + E E+EE EEE E E+++
Sbjct: 71 IVEAAEEEAKEELLKKTDEASSIIEKLQMQIEREQEEWEEELERLIEEAK 120
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. This domain is
found at the N terminus of SMC proteins. The SMC
(structural maintenance of chromosomes) superfamily
proteins have ATP-binding domains at the N- and
C-termini, and two extended coiled-coil domains
separated by a hinge in the middle. The eukaryotic SMC
proteins form two kind of heterodimers: the SMC1/SMC3
and the SMC2/SMC4 types. These heterodimers constitute
an essential part of higher order complexes, which are
involved in chromatin and DNA dynamics. This family also
includes the RecF and RecN proteins that are involved in
DNA metabolism and recombination.
Length = 1162
Score = 27.2 bits (60), Expect = 4.6
Identities = 16/47 (34%), Positives = 31/47 (65%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
++E++E E ++E E+EEE + +E +EEE+E++ +EEE +
Sbjct: 246 LLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLL 292
Score = 26.5 bits (58), Expect = 8.0
Identities = 20/52 (38%), Positives = 33/52 (63%)
Query: 109 MIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRIL 160
+ K+ E+E + E++E EE ++E +E E + E EEEEEE+ E+ +E L
Sbjct: 321 EKELKKLEKELKKEKEEIEELEKELKELEIKREAEEEEEEQLEKLQEKLEQL 372
Score = 26.5 bits (58), Expect = 9.3
Identities = 17/49 (34%), Positives = 34/49 (69%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRILI 161
K ++E +++E+ EE E+E +E + ++E EEEEEE+ E+ +E+ ++
Sbjct: 326 KLEKELKKEKEEIEELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEE 374
>gnl|CDD|227635 COG5325, COG5325, t-SNARE complex subunit, syntaxin [Intracellular
trafficking and secretion].
Length = 283
Score = 27.1 bits (60), Expect = 4.6
Identities = 12/46 (26%), Positives = 22/46 (47%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
+EEEDE+ +Q +++ EE E ++ E +EE +
Sbjct: 155 LEEEEDEESLSSLGSQQTLQQQGLSNEELEYQQILITERDEEIKNL 200
>gnl|CDD|205480 pfam13300, DUF4078, Domain of unknown function (DUF4078). This
family is found from fungi to humans, but its exact
function is not known.
Length = 88
Score = 25.7 bits (57), Expect = 4.6
Identities = 15/40 (37%), Positives = 26/40 (65%)
Query: 119 DEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
DE+E +E+ EE E+ E+ E+E +E EE +E+ + + R
Sbjct: 41 DEEERKEQMEELEKAREETERERKEREERKEKRKRAIEER 80
Score = 25.3 bits (56), Expect = 7.5
Identities = 16/39 (41%), Positives = 26/39 (66%)
Query: 117 EEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+E+E +EQ EE E+ EE + E++E EE +E+ + EE
Sbjct: 41 DEEERKEQMEELEKAREETERERKEREERKEKRKRAIEE 79
>gnl|CDD|217509 pfam03353, Lin-8, Ras-mediated vulval-induction antagonist. LIN-8
is a nuclear protein, present at the sites of
transcriptional repressor complexes, which interacts
with LIN-35 Rb.Lin35 Rb is a product of the class B
synMuv gene lin-35 which silences genes required for
vulval specification through chromatin modification and
remodelling. The biological role of the interaction has
not yet been determined however predictions have been
made. The interaction shows that class A synMuv genes
control vulval induction through the transcriptional
regulation of gene expression. LIN-8 normally functions
as part of a protein complex however when the complex is
absent, other family members can partially replace LIN-8
activity.
Length = 316
Score = 27.0 bits (60), Expect = 4.7
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
E +DED+ + ++ E ++ EE +E +E E EE +D
Sbjct: 137 EADDEDDIIYDGIFEDRTRESQDMEENDEVDEVEVEEVPDD 177
Score = 27.0 bits (60), Expect = 5.5
Identities = 11/45 (24%), Positives = 22/45 (48%)
Query: 115 KEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
++ E ++ EE +E +E E +E ++ +E E+ SR
Sbjct: 151 EDRTRESQDMEENDEVDEVEVEEVPDDYGANLAVDEPEQSTMSRP 195
>gnl|CDD|214818 smart00784, SPT2, SPT2 chromatin protein. This entry includes the
Saccharomyces cerevisiae protein SPT2 which is a
chromatin protein involved in transcriptional
regulation.
Length = 106
Score = 26.2 bits (58), Expect = 4.8
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+ +++D+D E + QEEE E+ EEE E+EEE
Sbjct: 56 DDDDDDDDMEAGGADIQEEERRSARLARLEDREEERLEKEEE 97
Score = 25.8 bits (57), Expect = 5.5
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 117 EEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
E + QEEE E++EEE E+EEE E+
Sbjct: 65 EAGGADIQEEERRSARLARLEDREEERLEKEEEREKRA 102
>gnl|CDD|222762 pfam14456, alpha-hel2, Alpha-helical domain 2. An alpha-helical
domain found in gene neighborhoods encoding genes
containing bacterial homologs of components of the
ubiquitin modification pathway such as the E1, E2, Ub
and JAB peptidase proteins.
Length = 322
Score = 27.0 bits (60), Expect = 4.8
Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 8/56 (14%)
Query: 102 MVSCVFWMIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+ S +W + ++DEE+ E + E E+ EE EE +D
Sbjct: 131 LASYWYW--------DGEDDEEEALEVLEGEGEDDEEAAAEEYFSRVRPALAPDDG 178
>gnl|CDD|227352 COG5019, CDC3, Septin family protein [Cell division and chromosome
partitioning / Cytoskeleton].
Length = 373
Score = 26.9 bits (60), Expect = 4.9
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
E ++ E + EEE+E +++ E+ E+E+ EE E+
Sbjct: 300 EPSLKEIHEARLNEEERELKKKFTEKIREKEKRLEELEQN 339
Score = 26.5 bits (59), Expect = 7.4
Identities = 12/50 (24%), Positives = 25/50 (50%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
+ + E+E E +++ E+ E+E+ +E E+ EE +E + I
Sbjct: 305 EIHEARLNEEERELKKKFTEKIREKEKRLEELEQNLIEERKELNSKLEEI 354
>gnl|CDD|183731 PRK12766, PRK12766, 50S ribosomal protein L32e; Provisional.
Length = 232
Score = 26.7 bits (59), Expect = 4.9
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
E E E EDE EEEEE++ + E E + E+ E +EE
Sbjct: 64 ETEAEVEDEGGEEEEEEDADVETELRPRGLTEKTPELSDEEA 105
Score = 26.3 bits (58), Expect = 7.1
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Query: 117 EEDEDEEQEEEEEQEEEEEQEEQEEEEEEE-----EEEEEEEEEDSRIL 160
E E+ E E E+E EEEE+E+ + E E E+ E +E++R+L
Sbjct: 60 EVSEETEAEVEDEGGEEEEEEDADVETELRPRGLTEKTPELSDEEARLL 108
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division
and chromosome partitioning].
Length = 420
Score = 27.0 bits (60), Expect = 5.0
Identities = 7/43 (16%), Positives = 12/43 (27%)
Query: 117 EEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
E + +E E + E + E + E I
Sbjct: 244 EAAAAKAREAAAAAEAAAARARAAEAKRTGETYKPTAPEKMLI 286
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase.
Length = 1066
Score = 27.2 bits (60), Expect = 5.2
Identities = 10/43 (23%), Positives = 29/43 (67%)
Query: 117 EEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
E + +++ EEE E ++++EE+ +E+E ++ + ++E +++
Sbjct: 5 ESEAEKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKL 47
>gnl|CDD|227931 COG5644, COG5644, Uncharacterized conserved protein [Function
unknown].
Length = 869
Score = 27.0 bits (59), Expect = 5.3
Identities = 9/46 (19%), Positives = 22/46 (47%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
KE E + + E +E + E E + + + ++E + + ++ R
Sbjct: 150 KENLLESDASSSNDSESEESDSESEIESSDSDHDDENSDSKLDNLR 195
>gnl|CDD|216249 pfam01025, GrpE, GrpE.
Length = 165
Score = 26.4 bits (59), Expect = 5.4
Identities = 19/38 (50%), Positives = 28/38 (73%)
Query: 123 EQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRIL 160
E++EEEE+ E+EE+ +EE EE EEE EE ++ R+L
Sbjct: 1 EEKEEEEELEDEEEALEEELEELEEEIEELKDRLLRLL 38
Score = 26.4 bits (59), Expect = 5.5
Identities = 20/33 (60%), Positives = 25/33 (75%)
Query: 122 EEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
EE+EEEEE E+EEE E+E EE EEE EE ++
Sbjct: 1 EEKEEEEELEDEEEALEEELEELEEEIEELKDR 33
Score = 25.6 bits (57), Expect = 10.0
Identities = 17/33 (51%), Positives = 25/33 (75%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEE 145
+EKEEE+E E++EE E+E EE +EE EE ++
Sbjct: 1 EEKEEEEELEDEEEALEEELEELEEEIEELKDR 33
>gnl|CDD|223957 COG1026, COG1026, Predicted Zn-dependent peptidases,
insulinase-like [General function prediction only].
Length = 978
Score = 26.9 bits (60), Expect = 5.5
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 104 SCVFWMIKP-KEKEEEDEDEEQE-----EEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
V ++ P E EE+ E EE+E E +E+ E+ ++ ++ +E +++ + EED
Sbjct: 449 HYVTVIVLPSPELEEKLEKEERELLQKRSSELTDEDLEKIIKDSKKLKERQDQPDSEEDL 508
Query: 158 RIL 160
L
Sbjct: 509 ATL 511
>gnl|CDD|185638 PTZ00459, PTZ00459, mucin-associated surface protein (MASP);
Provisional.
Length = 291
Score = 26.7 bits (58), Expect = 5.5
Identities = 12/38 (31%), Positives = 24/38 (63%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEE 149
P E+++ED D++ EE ++ + E EE+E+ + +E
Sbjct: 73 PTEEDDEDVDDDSEEGDDDDGGAEDEEEEKVRGQSGQE 110
Score = 26.7 bits (58), Expect = 5.8
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEE 151
P EE+DED + + EE +++ E++EEE+ + +E
Sbjct: 71 PLPTEEDDEDVDDDSEEGDDDDGGAEDEEEEKVRGQSGQE 110
>gnl|CDD|218652 pfam05602, CLPTM1, Cleft lip and palate transmembrane protein 1
(CLPTM1). This family consists of several eukaryotic
cleft lip and palate transmembrane protein 1 sequences.
Cleft lip with or without cleft palate is a common birth
defect that is genetically complex. The nonsyndromic
forms have been studied genetically using linkage and
candidate-gene association studies with only partial
success in defining the loci responsible for orofacial
clefting. CLPTM1 encodes a transmembrane protein and has
strong homology to two Caenorhabditis elegans genes,
suggesting that CLPTM1 may belong to a new gene family.
This family also contains the human cisplatin resistance
related protein CRR9p which is associated with
CDDP-induced apoptosis.
Length = 437
Score = 26.9 bits (60), Expect = 5.6
Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 10/51 (19%)
Query: 93 QANWSRGNPMVSCVF----WMIKPKEKE-----EEDEDEEQEEEEEQEEEE 134
+ G V VF ++ K K K+ + E EE EEE+ ++
Sbjct: 129 DKGYDSGK-AVHFVFPLTTYLPKKKVKKKNLLGGKSEKEEPEEEKTPAPDK 178
>gnl|CDD|234366 TIGR03825, FliH_bacil, flagellar assembly protein FliH. This
bacillus clade of FliH proteins is not found by the Pfam
FliH model pfam02108, but is closely related to the
sequences identified by that model. Sequences identified
by this model are observed in flagellar operons in an
analogous position relative to other flagellar operon
genes.
Length = 255
Score = 26.7 bits (59), Expect = 5.6
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
E E+E DEEQE E+ E+ E + Q E+ E + E+ +
Sbjct: 29 PETEQELADEEQEFEQILEKAEAEAAQIIEQAEAQAAAIREQIEQE 74
>gnl|CDD|150747 pfam10107, Endonuc_Holl, Endonuclease related to archaeal Holliday
junction resolvase. This domain is found in various
predicted bacterial endonucleases which are distantly
related to archaeal Holliday junction resolvases.
Length = 153
Score = 26.5 bits (59), Expect = 5.6
Identities = 15/53 (28%), Positives = 28/53 (52%)
Query: 102 MVSCVFWMIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
++S +IK + K E+ E E+ E E + + E + EE +++EE+E
Sbjct: 6 ILSLFIKIIKLQGKVEKRARELFEQWRNAEREAQAMREAEAKFEEWQKKEEKE 58
>gnl|CDD|225340 COG2719, SpoVR, Uncharacterized conserved protein [Function
unknown].
Length = 495
Score = 27.0 bits (60), Expect = 5.7
Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 106 VFWMIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
V +PK+ E+E QEE EE + + + ++ E +D+R
Sbjct: 173 VDRYKRPKKISSEEERARQEER---EEYLQSQVNDLWRTLPKKPGEAAVKDAR 222
>gnl|CDD|115072 pfam06391, MAT1, CDK-activating kinase assembly factor MAT1. MAT1
is an assembly/targeting factor for cyclin-dependent
kinase-activating kinase (CAK), which interacts with the
transcription factor TFIIH. The domain found to the
N-terminal side of this domain is a C3HC4 RING finger.
Length = 200
Score = 26.6 bits (59), Expect = 5.7
Identities = 14/43 (32%), Positives = 30/43 (69%)
Query: 119 DEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRILI 161
E EE E+ E+E+E ++E++ ++EE+E++ +E+D + +I
Sbjct: 90 REQEELEQALEEEKEMKEEKRLHLQKEEQEQKMAKEKDKQEII 132
>gnl|CDD|219111 pfam06625, DUF1151, Protein of unknown function (DUF1151). This
family consists of several hypothetical eukaryotic
proteins of unknown function.
Length = 122
Score = 26.3 bits (58), Expect = 5.7
Identities = 16/48 (33%), Positives = 31/48 (64%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRIL 160
KE++EE+E + + E E+E + ++ E+ E E+ +E+EE+E+ L
Sbjct: 67 KEQKEEEEAKRLQSELERELMKRAQKLEQLELEKAKEDEEQEQIPEFL 114
>gnl|CDD|227084 COG4741, COG4741, Predicted secreted endonuclease distantly related
to archaeal Holliday junction resolvase [Nucleotide
transport and metabolism].
Length = 175
Score = 26.7 bits (59), Expect = 5.8
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 115 KEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
K E E+ Q+ E E+ E Q +EEE + +E E++ EE
Sbjct: 34 KARELEETLQKAERERLVNEAQARKEEEWKLKEWIEKKIEEARE 77
>gnl|CDD|215622 PLN03189, PLN03189, Protease specific for SMALL UBIQUITIN-RELATED
MODIFIER (SUMO); Provisional.
Length = 490
Score = 26.7 bits (59), Expect = 5.8
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
K+KE D +E + E ++ EE E E + +E EE+ E +
Sbjct: 120 KDKEVVDVGDELGKVEMISDDSSIEEVEAVEMDVDEVEEKAEMGN 164
>gnl|CDD|240228 PTZ00010, PTZ00010, tubulin beta chain; Provisional.
Length = 445
Score = 26.7 bits (59), Expect = 5.8
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 119 DEDEEQEEEEEQEE--EEEQEEQEEEEEEEEEEEEEEEE 155
DE E E E + E Q+ Q+ EEE E +EEEE
Sbjct: 404 DEMEFTEAESNMNDLVSEYQQYQDATVEEEGEFDEEEEA 442
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional.
Length = 880
Score = 26.9 bits (60), Expect = 5.9
Identities = 19/45 (42%), Positives = 26/45 (57%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+E EE + E E EE +E E++ E+ EE EEE EE E D+
Sbjct: 359 EELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDA 403
>gnl|CDD|219405 pfam07418, PCEMA1, Acidic phosphoprotein precursor PCEMA1. This
family consists of several acidic phosphoprotein
precursor PCEMA1 sequences which appear to be found
exclusively in Plasmodium chabaudi. PCEMA1 is an antigen
that is associated with the membrane of the infected
erythrocyte throughout the entire intraerythrocytic
cycle. The exact function of this family is unclear.
Length = 286
Score = 26.8 bits (59), Expect = 5.9
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
K+ E ++E +E+ E +E + ++ E E E+E E+E EEE
Sbjct: 231 KDGENDNEVKEKIRREYREWKGDKANTNETEIEDESEDEYEEEAG 275
>gnl|CDD|215107 PLN00220, PLN00220, tubulin beta chain; Provisional.
Length = 447
Score = 26.7 bits (59), Expect = 6.0
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 116 EEEDEDEEQEEEEE-----QEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
E DE E E E E ++ Q+ +EE E E+EEEEEE +
Sbjct: 401 EGMDEMEFTEAESNMNDLVSEYQQYQDATADEEGEYEDEEEEEEYEE 447
>gnl|CDD|224035 COG1110, COG1110, Reverse gyrase [DNA replication, recombination,
and repair].
Length = 1187
Score = 27.0 bits (60), Expect = 6.0
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 128 EEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRILI 161
+ E+ E EE E E E E++ IL+
Sbjct: 247 RKLYGEKRAERVREELREVEREREKKRRKLGILV 280
>gnl|CDD|224337 COG1419, FlhF, Flagellar GTP-binding protein [Cell motility and
secretion].
Length = 407
Score = 26.9 bits (60), Expect = 6.1
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
P EK+ E+ ++ E E++ QE ++ EE E +E
Sbjct: 83 PAEKKREERKAAKKIERSTPSLIERKTQEVKDSGEEIAEMMRDE 126
>gnl|CDD|217356 pfam03078, ATHILA, ATHILA ORF-1 family. ATHILA is a group of
Arabidopsis thaliana retrotransposons belonging to the
Ty3/gypsy family of the long terminal repeat (LTR) class
of eukaryotic retrotransposons. The central region of
ATHILA retrotransposons contains two or three open
reading frames (ORFs). This family represents the ORF1
product. The function of ORF1 is unknown.
Length = 456
Score = 26.9 bits (59), Expect = 6.2
Identities = 13/39 (33%), Positives = 20/39 (51%)
Query: 118 EDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
D+ E EE E++ +EE E+ E E E+ + EE
Sbjct: 366 TDDIEHTEEATEEDVDEEDEDDEAELEKFDTSMYHFEEH 404
Score = 26.9 bits (59), Expect = 6.5
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
+E + D +E ++ E EE EE+ +EE+E++E E
Sbjct: 349 REGDNIDFKPSKEILGATDDIEHTEEATEEDVDEEDEDDEAE 390
>gnl|CDD|235505 PRK05563, PRK05563, DNA polymerase III subunits gamma and tau;
Validated.
Length = 559
Score = 26.8 bits (60), Expect = 6.2
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 118 EDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
EDE ++ EE Q+ + E+EE+EEEEE E +E
Sbjct: 513 EDEWQKIREEFLQKHKNEEEEEEEEEELPLIPEAKE 548
Score = 26.4 bits (59), Expect = 7.7
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 117 EEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEE 152
E++ + +EE ++ + EE+EE+EEEE E +E
Sbjct: 513 EDEWQKIREEFLQKHKNEEEEEEEEEELPLIPEAKE 548
Score = 26.4 bits (59), Expect = 9.0
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 123 EQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
E E ++ +EE ++ + EEEEEEEEEE E
Sbjct: 513 EDEWQKIREEFLQKHKNEEEEEEEEEELPLIPE 545
Score = 26.4 bits (59), Expect = 9.5
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 120 EDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
EDE Q+ EE ++ + EE+EEEEEEE E +E
Sbjct: 513 EDEWQKIREEFLQKHKNEEEEEEEEEELPLIPEAKE 548
>gnl|CDD|219922 pfam08595, RXT2_N, RXT2-like, N-terminal. The family represents
the N-terminal region of RXT2-like proteins. In S.
cerevisiae, RXT2 has been demonstrated to be involved in
conjugation with cellular fusion (mating) and invasive
growth. A high throughput localisation study has
localised RXT2 to the nucleus.
Length = 141
Score = 26.2 bits (58), Expect = 6.2
Identities = 6/28 (21%), Positives = 21/28 (75%)
Query: 129 EQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+++ + ++ E++E++EE + E+++E+
Sbjct: 48 DEDGGDIDDDDEDDEDDEEADAEDDDEN 75
Score = 25.8 bits (57), Expect = 9.5
Identities = 7/27 (25%), Positives = 20/27 (74%)
Query: 119 DEDEEQEEEEEQEEEEEQEEQEEEEEE 145
DED +++++++E+++E E+++E
Sbjct: 48 DEDGGDIDDDDEDDEDDEEADAEDDDE 74
>gnl|CDD|222927 PHA02774, PHA02774, E1; Provisional.
Length = 613
Score = 26.8 bits (60), Expect = 6.3
Identities = 11/46 (23%), Positives = 19/46 (41%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRILI 161
EE+D EEE + E+E E E E + + +++
Sbjct: 113 EEQDSGLGNSLEEESTDVVEEEGVESSGGGEGGSETGQGGGNGLVL 158
>gnl|CDD|227494 COG5165, POB3, Nucleosome-binding factor SPN, POB3 subunit
[Transcription / DNA replication, recombination, and
repair / Chromatin structure and dynamics].
Length = 508
Score = 26.9 bits (59), Expect = 6.4
Identities = 9/40 (22%), Positives = 19/40 (47%)
Query: 118 EDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+ ED E++E E+++ Q + + EE + + S
Sbjct: 457 DSEDINMGSAGEEDESEDEDFQMVSDSDVAEEYDLQAALS 496
>gnl|CDD|217443 pfam03234, CDC37_N, Cdc37 N terminal kinase binding. Cdc37 is a
molecular chaperone required for the activity of
numerous eukaryotic protein kinases. This domain
corresponds to the N terminal domain which binds
predominantly to protein kinases and is found N terminal
to the Hsp (Heat shocked protein) 90-binding domain
pfam08565. Expression of a construct consisting of only
the N-terminal domain of Saccharomyces pombe Cdc37
results in cellular viability. This indicates that
interactions with the cochaperone Hsp90 may not be
essential for Cdc37 function.
Length = 172
Score = 26.3 bits (58), Expect = 6.5
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 100 NPMVSCVFWMIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
N MV +F +K +E DE EE ++ ++ ++E++E ++ +E E+EE +I
Sbjct: 105 NEMVEDLFDQVK----DEVDEKNGAALIEELQKHRDKLKKEQKELLKKLDELEKEEKKKI 160
>gnl|CDD|119241 pfam10721, DUF2514, Protein of unknown function (DUF2514). This
family is conserved in bacteria and some viruses. The
function is not known.
Length = 162
Score = 26.2 bits (58), Expect = 6.6
Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 5/42 (11%)
Query: 113 KEKEEEDEDEEQ-----EEEEEQEEEEEQEEQEEEEEEEEEE 149
++ + D + E EE+ Q Q E ++ +EE
Sbjct: 32 QKWADRDAADALAEVIAETAARAEEQRRQAAQNEAAKDAQEE 73
>gnl|CDD|236081 PRK07735, PRK07735, NADH dehydrogenase subunit C; Validated.
Length = 430
Score = 26.9 bits (59), Expect = 6.6
Identities = 9/46 (19%), Positives = 20/46 (43%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
K++ EE + + E + EEE E+E+ + ++ +
Sbjct: 10 LKKEAARRAKEEARKRLVAKHGAEISKLEEENREKEKALPKNDDMT 55
>gnl|CDD|218597 pfam05466, BASP1, Brain acid soluble protein 1 (BASP1 protein).
This family consists of several brain acid soluble
protein 1 (BASP1) or neuronal axonal membrane protein
NAP-22. The BASP1 is a neuron enriched Ca(2+)-dependent
calmodulin-binding protein of unknown function.
Length = 233
Score = 26.3 bits (57), Expect = 6.7
Identities = 16/47 (34%), Positives = 28/47 (59%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
K K+K+++ E EEE +E EE + E E +E +EE+ ++D+
Sbjct: 17 KAKDKDKKAEGAATEEEGTPKENEEAQAAAETTEVKEAKEEKPDKDA 63
>gnl|CDD|235861 PRK06782, PRK06782, flagellar motor switch protein; Reviewed.
Length = 528
Score = 26.7 bits (59), Expect = 6.7
Identities = 12/45 (26%), Positives = 22/45 (48%)
Query: 109 MIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
++ P KEEE+ E+ E E+ E Q + +E ++ E +
Sbjct: 412 LLYPMVKEEEEIATEEIEPEKVVEPVVQPIEFKEVKQMEPVYMDT 456
>gnl|CDD|179867 PRK04598, tatA, twin arginine translocase protein A; Provisional.
Length = 81
Score = 25.2 bits (55), Expect = 7.0
Identities = 9/45 (20%), Positives = 26/45 (57%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
+K +K +E+ + +++ + E + EQ + E E+++++E+
Sbjct: 36 VKGFKKAMSEEESAKANKKDADFEPKNLEQAKTEAAAEKKKDKEQ 80
>gnl|CDD|227429 COG5098, COG5098, Chromosome condensation complex Condensin,
subunit D2 [Chromatin structure and dynamics / Cell
division and chromosome partitioning].
Length = 1128
Score = 26.9 bits (59), Expect = 7.0
Identities = 11/48 (22%), Positives = 22/48 (45%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+K +E + E++ E++E + E E + E E E E ++
Sbjct: 446 LKSGLQETLCDGEKEVEQDEGQCRTELEGSFNKSAESRIENEVENINA 493
>gnl|CDD|219882 pfam08524, rRNA_processing, rRNA processing. This is a family of
proteins that are involved in rRNA processing. In a
localisation study they were found to localise to the
nucleus and nucleolus. The family also includes other
metazoa members from plants to mammals where the protein
has been named BR22 and is associated with TTF-1,
thyroid transcription factor 1. In the lungs, the family
binds TTF-1 to form a complex which influences the
expression of the key lung surfactant protein-B (SP-B)
and -C (SP-C), the small hydrophobic surfactant proteins
that maintain surface tension in alveoli.
Length = 150
Score = 26.0 bits (57), Expect = 7.0
Identities = 14/48 (29%), Positives = 31/48 (64%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
K K+ +E+ E +Q + E++E+E + ++E E+ E +++++E E R
Sbjct: 70 KKKKLDEKKEIAKQRKREQREKELAKRQKELEKIELSKKKQKERERRR 117
>gnl|CDD|184416 PRK13955, mscL, large-conductance mechanosensitive channel;
Provisional.
Length = 130
Score = 25.9 bits (57), Expect = 7.1
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEE 132
K K+EE+++EE E ++EE
Sbjct: 92 KLTSKKEEEKEEEIPEPTKEEE 113
Score = 25.9 bits (57), Expect = 7.2
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 138 EQEEEEEEEEEEEEEEEE 155
++EEE+EEE E +EEE
Sbjct: 96 KKEEEKEEEIPEPTKEEE 113
>gnl|CDD|220504 pfam09987, DUF2226, Uncharacterized protein conserved in archaea
(DUF2226). This domain, found in various hypothetical
archaeal proteins, has no known function.
Length = 252
Score = 26.5 bits (58), Expect = 7.1
Identities = 17/45 (37%), Positives = 19/45 (42%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
E E E E + E +E E EE EEE EE E EE
Sbjct: 109 NAVVEHLLETEVEVEGGECLLKEPFTPTEYEETEEEVEEPESREE 153
>gnl|CDD|219911 pfam08572, PRP3, pre-mRNA processing factor 3 (PRP3). Pre-mRNA
processing factor 3 (PRP3) is a U4/U6-associated
splicing factor. The human PRP3 has been implicated in
autosomal retinitis pigmentosa.
Length = 222
Score = 26.2 bits (58), Expect = 7.1
Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 3/66 (4%)
Query: 90 LDDQANWSRGNPMVSCVFWMIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEE 149
LD + ++ I+ + ++ E+ E + EEEE EE + +
Sbjct: 5 LDPRMAEAKRKKRRRRGLQFIEKGKFSQQ---AEELRREAKLEEEEARISEEAQNAGLKS 61
Query: 150 EEEEEE 155
+ E
Sbjct: 62 ATDLAE 67
>gnl|CDD|219293 pfam07093, SGT1, SGT1 protein. This family consists of several
eukaryotic SGT1 proteins. Human SGT1 or hSGT1 is known
to suppress GCR2 and is highly expressed in the muscle
and heart. The function of this family is unknown
although it has been speculated that SGT1 may be
functionally analogous to the Gcr2p protein of
Saccharomyces cerevisiae which is known to be a
regulatory factor of glycolytic gene expression.
Length = 557
Score = 26.6 bits (59), Expect = 7.2
Identities = 11/46 (23%), Positives = 25/46 (54%)
Query: 109 MIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
I ++ D+ +E ++E++ E+E+ + EE EE ++ + E
Sbjct: 476 EIDNDLPDDSDDADEDDDEDDDEDEDSSSDSTLEELEEYMDQMDAE 521
>gnl|CDD|216881 pfam02115, Rho_GDI, RHO protein GDP dissociation inhibitor.
Length = 200
Score = 26.1 bits (58), Expect = 7.2
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 129 EQEEEEEQEEQEEEEEEEEEEEEE 152
EQE EQ E+ E+EE+E+
Sbjct: 3 EQEPTAEQAEEIAAEDEEDEDSVN 26
>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional.
Length = 568
Score = 26.5 bits (58), Expect = 7.3
Identities = 12/47 (25%), Positives = 16/47 (34%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
+ DED + EEE + E E E E + SR
Sbjct: 479 NSLERGADEDYLIVNGTNEPYEEEVIKTNENENFPLENESPCDGISR 525
>gnl|CDD|215620 PLN03187, PLN03187, meiotic recombination protein DMC1 homolog;
Provisional.
Length = 344
Score = 26.3 bits (58), Expect = 7.4
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 130 QEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
Q +E Q + E EE +EEE+ E D I
Sbjct: 6 QADEGAQLQLVEAEEVDEEEDLFESIDKLI 35
>gnl|CDD|233222 TIGR00986, 3a0801s05tom22, mitochondrial import receptor subunit
Tom22. The mitochondrial protein translocase (MPT)
family, which brings nuclearly encoded preproteins into
mitochondria, is very complex with 19 currently
identified protein constituents.These proteins include
several chaperone proteins, four proteins of the outer
membrane translocase (Tom) import receptor, five
proteins of the Tom channel complex, five proteins of
the inner membrane translocase (Tim) and three "motor"
proteins. This family is specific for the Tom22 proteins
[Transport and binding proteins, Amino acids, peptides
and amines].
Length = 145
Score = 26.1 bits (57), Expect = 7.4
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 109 MIKPKEKEEEDE--DEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
M++ E E+E E+Q E +E++E+ + + E+ + + E EEE
Sbjct: 1 MVQLTEVEDEHFQQPEQQTVVEPEEDDEDFTDVDSEDSVDSDFESLEEE 49
>gnl|CDD|219106 pfam06614, Neuromodulin, Neuromodulin. This family consists of
several neuromodulin (Axonal membrane protein GAP-43)
sequences and is found in conjunction with pfam00612.
GAP-43 is a neuronal calmodulin-binding phosphoprotein
that is concentrated in growth cones and pre-synaptic
terminals.
Length = 174
Score = 26.0 bits (56), Expect = 7.5
Identities = 13/42 (30%), Positives = 26/42 (61%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEE 152
+E E ++EE+++ E+ + E +QEE +EEE + ++E
Sbjct: 131 PEQETAESSQEEEKKDAVEETKPSESAQQEEAKEEEAKADQE 172
>gnl|CDD|223610 COG0536, Obg, Predicted GTPase [General function prediction only].
Length = 369
Score = 26.4 bits (59), Expect = 7.5
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 128 EEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRILI 161
EE + E E E EE E E ++E ED I+
Sbjct: 333 EETKAEAEAAEAEELPVEVEVLYDDEHEDFEIVR 366
Score = 26.4 bits (59), Expect = 8.3
Identities = 6/48 (12%), Positives = 23/48 (47%)
Query: 100 NPMVSCVFWMIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEE 147
+ ++ + +++ + E E + E+ E + +++ E E +++
Sbjct: 322 DELLRALAELLEETKAEAEAAEAEELPVEVEVLYDDEHEDFEIVRDDD 369
Score = 26.4 bits (59), Expect = 8.4
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 115 KEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEE 151
+E + E E E EE E E + E E+ E +++
Sbjct: 333 EETKAEAEAAEAEELPVEVEVLYDDEHEDFEIVRDDD 369
>gnl|CDD|202833 pfam03962, Mnd1, Mnd1 family. This family of proteins includes
MND1 from S. cerevisiae. The mnd1 protein forms a
complex with hop2 to promote homologous chromosome
pairing and meiotic double-strand break repair.
Length = 188
Score = 26.0 bits (58), Expect = 7.6
Identities = 13/43 (30%), Positives = 25/43 (58%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
KE EE + + + + ++ ++ +EE EE E EE ++ E+E
Sbjct: 76 KELEELKQRIAELQAQIEKLKKGREETEERTELLEELKQLEKE 118
Score = 26.0 bits (58), Expect = 7.9
Identities = 13/48 (27%), Positives = 27/48 (56%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRIL 160
K++ EE + E + + E+ ++ E+ EE E EE ++ E++ + L
Sbjct: 75 KKELEELKQRIAELQAQIEKLKKGREETEERTELLEELKQLEKELKKL 122
Score = 25.7 bits (57), Expect = 9.6
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
K K ++ +++ EE +Q E Q + E+ ++ EE EE E +
Sbjct: 66 KLKTRLEKLKKELEELKQRIAELQAQIEKLKKGREETEERTELLEEL 112
>gnl|CDD|237046 PRK12297, obgE, GTPase CgtA; Reviewed.
Length = 424
Score = 26.6 bits (60), Expect = 7.7
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 122 EEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
EE E +EEE E+E + EEEE++ +ED
Sbjct: 327 EETPEFPLEEEEVEEEVYYKFEEEEKDFTITRDED 361
>gnl|CDD|216485 pfam01412, ArfGap, Putative GTPase activating protein for Arf.
Putative zinc fingers with GTPase activating proteins
(GAPs) towards the small GTPase, Arf. The GAP of ARD1
stimulates GTPase hydrolysis for ARD1 but not ARFs.
Length = 117
Score = 25.7 bits (57), Expect = 7.8
Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 8 GIHRSLGVFKTSLVKHLKGSCFEQ 31
G+HRSLGV S V+ L +
Sbjct: 41 GVHRSLGV-HISKVRSLTLDKWTP 63
>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional.
Length = 333
Score = 26.5 bits (59), Expect = 7.8
Identities = 6/43 (13%), Positives = 15/43 (34%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
P+ + +Q + + Q E E ++ + +E
Sbjct: 154 PQPVHSAPQPAQQAFQPAEPVAAPQPEPVAEPAPVMDKPKRKE 196
>gnl|CDD|149439 pfam08375, Rpn3_C, Proteasome regulatory subunit C-terminal. This
eukaryotic domain is found at the C-terminus of 26S
proteasome regulatory subunits such as the non-ATPase
Rpn3 subunit which is essential for proteasomal
function. It occurs together with the PCI/PINT domain
(pfam01399).
Length = 68
Score = 25.0 bits (55), Expect = 7.8
Identities = 10/35 (28%), Positives = 22/35 (62%)
Query: 118 EDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEE 152
D+++++EE+ E+ E +Q E E +E E + ++
Sbjct: 34 PDKEKKEEEKAEEARERDQLELELAKELSEGDLDD 68
>gnl|CDD|178439 PLN02847, PLN02847, triacylglycerol lipase.
Length = 633
Score = 26.4 bits (58), Expect = 7.9
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
E E E ++E + QE E + + QEEE +E EEE
Sbjct: 496 EGELWYELEKELQRQETEVDAQAQEEEAAAAKEITEEE 533
>gnl|CDD|222918 PHA02687, PHA02687, ORF061 late transcription factor VLTF-4;
Provisional.
Length = 231
Score = 26.1 bits (57), Expect = 8.2
Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 111 KPKEKEEEDEDEEQEEEEEQ--EEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+ K+K + D+ E+ + E+ ++ ++ EE+E EE + EE D+
Sbjct: 89 RTKKKAKADKPEKSPKAVEKLCPPDDRDDKNEEKEPTEEAQRNEESGDA 137
>gnl|CDD|237869 PRK14962, PRK14962, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 472
Score = 26.3 bits (58), Expect = 8.3
Identities = 12/42 (28%), Positives = 27/42 (64%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
+E D +E+ + Q++E+++EE + +EE++E+ E E+
Sbjct: 336 SPNVQENDVEEKNDNSNVQQKEKKKEESKAKEEKQEDIEFEK 377
>gnl|CDD|184536 PRK14145, PRK14145, heat shock protein GrpE; Provisional.
Length = 196
Score = 26.0 bits (57), Expect = 8.3
Identities = 12/51 (23%), Positives = 25/51 (49%)
Query: 109 MIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
+ K KEEE + E+ E E E+ ++ + +++ +E EE ++
Sbjct: 4 VEKEINKEEEKDVNNLSSNEQMEGPPEDEQAQQNQPQQQTVDEIEELKQKL 54
>gnl|CDD|240226 PTZ00007, PTZ00007, (NAP-L) nucleosome assembly protein -L;
Provisional.
Length = 337
Score = 26.3 bits (58), Expect = 8.5
Identities = 9/43 (20%), Positives = 20/43 (46%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
E DED + +E+ ++ + + + + + + EED R
Sbjct: 278 EAIDEDSDYSSDEDDDDYDSYDSSDSASSDSNSDVDTNEEDDR 320
>gnl|CDD|233787 TIGR02223, ftsN, cell division protein FtsN. FtsN is a poorly
conserved protein active in cell division in a number of
Proteobacteria. The N-terminal 30 residue region tends
to by Lys/Arg-rich, and is followed by a
membrane-spanning region. This is followed by an acidic
low-complexity region of variable length and a
well-conserved C-terminal domain of two tandem regions
matched by pfam05036 (Sporulation related repeat), found
in several cell division and sporulation proteins. The
role of FtsN as a suppressor for other cell division
mutations is poorly understood; it may involve cell wall
hydrolysis [Cellular processes, Cell division].
Length = 298
Score = 26.2 bits (57), Expect = 8.7
Identities = 7/42 (16%), Positives = 15/42 (35%)
Query: 117 EEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
EE E+ + E+ + E+ E+ ++R
Sbjct: 109 EESAQLTAEQRQLLEQMQADMRAAEKVLATAPSEQTVAVEAR 150
Score = 26.2 bits (57), Expect = 9.4
Identities = 7/47 (14%), Positives = 16/47 (34%)
Query: 115 KEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRILI 161
+E EQ + EQ + + + ++ E+ E +
Sbjct: 109 EESAQLTAEQRQLLEQMQADMRAAEKVLATAPSEQTVAVEARKQTAE 155
>gnl|CDD|216652 pfam01698, FLO_LFY, Floricaula / Leafy protein. This family
consists of various plant development proteins which are
homologues of floricaula (FLO) and Leafy (LFY) proteins
which are floral meristem identity proteins. Mutations
in the sequences of these proteins affect flower and
leaf development.
Length = 382
Score = 26.1 bits (58), Expect = 8.7
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEE 142
+ KE E+D+D+E E+++ + E EE++ E
Sbjct: 194 RSKELREDDDDDEDEDDDGEGGGEGGEERQRE 225
>gnl|CDD|146486 pfam03879, Cgr1, Cgr1 family. Members of this family are
coiled-coil proteins that are involved in pre-rRNA
processing.
Length = 105
Score = 25.4 bits (56), Expect = 9.0
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 109 MIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEE 147
IK +EKE +DE E + + Q +E + +EE+E E+
Sbjct: 42 AIKAREKELKDEKEAERQRRIQAIKERRAAKEEKERYEK 80
>gnl|CDD|224302 COG1384, LysS, Lysyl-tRNA synthetase (class I) [Translation,
ribosomal structure and biogenesis].
Length = 521
Score = 26.1 bits (58), Expect = 9.0
Identities = 13/49 (26%), Positives = 19/49 (38%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
EK E E E + E E+ E E ++ E E E E ++
Sbjct: 427 FSILEKPPEAELSEDAKLEALEDLAEFLESIQKASLEVELHNEVYEVAK 475
>gnl|CDD|219978 pfam08701, GN3L_Grn1, GNL3L/Grn1 putative GTPase. Grn1 (yeast) and
GNL3L (human) are putative GTPases which are required
for growth and play a role in processing of nucleolar
pre-rRNA. This family contains a potential nuclear
localisation signal.
Length = 80
Score = 24.9 bits (55), Expect = 9.1
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 122 EEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
EE EE++ ++EEE++ +E + E E +
Sbjct: 49 EEIEEKKRKQEEEKERRKEARKAERAEARKRG 80
>gnl|CDD|219589 pfam07808, RED_N, RED-like protein N-terminal region. This family
contains sequences that are similar to the N-terminal
region of Red protein. This and related proteins contain
a RED repeat which consists of a number of RE and RD
sequence elements. The region in question has several
conserved NLS sequences and a putative trimeric
coiled-coil region, suggesting that these proteins are
expressed in the nucleus. The function of Red protein is
unknown, but efficient sequestration to nuclear bodies
suggests that its expression may be tightly regulated of
that the protein self-aggregates extremely efficiently.
Length = 238
Score = 26.0 bits (57), Expect = 9.1
Identities = 10/51 (19%), Positives = 24/51 (47%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRIL 160
+ KE EEE+ ++ + +E+ + + E+ E E + + E + +
Sbjct: 99 LIKKEDEEEEGKDKVNQSKEKYLPSQAQNLTEKRAESESKITFKTELGKNI 149
>gnl|CDD|213783 TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E1 component,
alpha subunit. Members of this protein family are the
alpha subunit of the E1 component of pyruvate
dehydrogenase (PDH). This model represents one branch of
a larger family that E1-alpha proteins from
2-oxoisovalerate dehydrogenase, acetoin dehydrogenase,
another PDH clade, etc [Energy metabolism, Pyruvate
dehydrogenase].
Length = 341
Score = 26.0 bits (58), Expect = 9.2
Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 17/48 (35%)
Query: 124 QEEEEEQEEE-----------------EEQEEQEEEEEEEEEEEEEEE 154
+EEEEE ++ EEQEE EEE E E E E
Sbjct: 263 KEEEEEWRKKDPILRLRKYLERKGLWDEEQEEALEEEAEAEVAEAVAE 310
>gnl|CDD|217206 pfam02731, SKIP_SNW, SKIP/SNW domain. This domain is found in
chromatin proteins.
Length = 158
Score = 25.7 bits (57), Expect = 9.3
Identities = 11/41 (26%), Positives = 23/41 (56%)
Query: 118 EDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
+ + EE Q E +++ E+E++E+EE+ E + +R
Sbjct: 115 YIAERKAREEVRQRAELQRQLAEKEKQEKEEKLRELAQRAR 155
>gnl|CDD|225029 COG2118, COG2118, DNA-binding protein [General function prediction
only].
Length = 116
Score = 25.4 bits (56), Expect = 9.3
Identities = 11/42 (26%), Positives = 26/42 (61%)
Query: 118 EDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
D++E +E + E +++ + EE+ E +EE+ +EE+++
Sbjct: 1 MDDEELEEIRRRKLAELQRQAKLEEQREAQEEQARQEEEAQK 42
>gnl|CDD|212510 cd11724, TP_methylase_like, Uncharacterized subfamily of S-AdoMet
dependent tetrapyrrole methylases. TP-methylases use
S-AdoMet (S-adenosyl-L-methionine or SAM) in the
methylation of diverse substrates. Most members catalyze
various methylation steps in cobalamin (vitamin B12)
biosynthesis, other members like Diphthine synthase and
Ribosomal RNA small subunit methyltransferase I (RsmI)
act on other substrates. The function of this subfamily
is not known.
Length = 255
Score = 26.1 bits (58), Expect = 9.3
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 107 FWMIKPKEKEEEDEDEEQEEEEEQEEEEEQEE 138
FW K E + ++ E E+E++ ++EE
Sbjct: 57 FWHYGGKPWENLEAEKSPREAFEEEKKRQREE 88
>gnl|CDD|227391 COG5058, LAG1, Protein transporter of the TRAM (translocating
chain-associating membrane) superfamily, longevity
assurance factor [Intracellular trafficking and
secretion].
Length = 395
Score = 26.3 bits (58), Expect = 9.5
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 133 EEEQEEQEEEEEEEEEEEEEEEED 156
E E +++ ++E EEE + E ED
Sbjct: 369 EGELKDERSDDESEEESDLESSED 392
>gnl|CDD|218806 pfam05911, DUF869, Plant protein of unknown function (DUF869).
This family consists of a number of sequences found in
Arabidopsis thaliana, Oryza sativa and Lycopersicon
esculentum (Tomato). The function of this family is
unknown.
Length = 767
Score = 26.5 bits (58), Expect = 9.5
Identities = 16/46 (34%), Positives = 29/46 (63%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
EKE ++ E + E EE+ E+ EQEE ++ +EEE++ +++ I
Sbjct: 688 EKERQNHQELIAKCRELEEKIERAEQEENMQKLDEEEQKIKQEKEI 733
>gnl|CDD|151958 pfam11521, TFIIE-A_C-term, C-terminal general transcription factor
TFIIE alpha. TFIIE is compiled of two subunits, alpha
and beta. This family of proteins are the C terminal
domain of the alpha subunit of the protein which is the
largest subunit and contains several functional domains
which are important for basal transcription and cell
growth. The C terminal end of the protein binds directly
to the amino-terminal PH domain of p62/Tfb1 (of IIH)
which is involved in the recruitment of the general
transcription factor IIH to the transcription
preinitiation complex. P53 competes for the same binding
site as TFIIE alpha which shows their structural
similarity. Like p53, TFIIE alpha 336-439 can activate
transcription in vivo.
Length = 86
Score = 25.2 bits (55), Expect = 9.5
Identities = 11/39 (28%), Positives = 23/39 (58%)
Query: 118 EDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
E + E +++ E + +EEE++E++E EE E++
Sbjct: 2 ESDTSESDDDSPSPEPPAGQSVDEEEDDEDDEFEEVEDE 40
>gnl|CDD|215141 PLN02252, PLN02252, nitrate reductase [NADPH].
Length = 888
Score = 26.2 bits (58), Expect = 9.5
Identities = 13/50 (26%), Positives = 23/50 (46%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
+ + +DEDE+ +E+E E+ +E E E + +E D I
Sbjct: 33 VSSPKVPSDDEDEDDDEDEADYEDLIVKENVEVEPSVVDPRDEGTPDEWI 82
>gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC;
Provisional.
Length = 695
Score = 26.1 bits (58), Expect = 9.6
Identities = 8/42 (19%), Positives = 18/42 (42%)
Query: 117 EEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
++++++ EE + E Q E E+ E ++ E
Sbjct: 440 AIEQEKKKAEEAKARFEARQARLEREKAAREARHKKAAEARA 481
>gnl|CDD|234029 TIGR02830, spore_III_AG, stage III sporulation protein AG. CC A
comparative genome analysis of all sequenced genomes of
shows a number of proteins conserved strictly among the
endospore-forming subset of the Firmicutes. This
protein, a member of this panel, is found in a spore
formation operon and is designated stage III sporulation
protein AG [Cellular processes, Sporulation and
germination].
Length = 186
Score = 25.8 bits (57), Expect = 9.6
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 108 WMIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
+ ++ EE D ++ E E + E Q+E E + E++ E E +E
Sbjct: 22 FFSSSEDIEESDTPNNEKTEPEFVQGEVQKEDEISDYEKQYENELKE 68
>gnl|CDD|172630 PRK14141, PRK14141, heat shock protein GrpE; Provisional.
Length = 209
Score = 25.8 bits (57), Expect = 9.6
Identities = 7/37 (18%), Positives = 15/37 (40%)
Query: 121 DEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
DE+ + + + + E + E E++ E D
Sbjct: 3 DEKNKNGNPADAARDANNPVDREAKPYEMEDDPEPDP 39
>gnl|CDD|217952 pfam04189, Gcd10p, Gcd10p family. eIF-3 is a multi-subunit complex
that stimulates translation initiation in vitro at
several different steps. This family corresponds to the
gamma subunit if eIF3. The Yeast protein Gcd10p has also
been shown to be part of a complex with the
methyltransferase Gcd14p that is involved in modifying
tRNA.
Length = 299
Score = 26.1 bits (58), Expect = 9.7
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 129 EQEEEEEQEEQEEEEEEEEEEEEEEEED 156
E E+ E+EE E EEE +
Sbjct: 272 YFEPPAEEIEEEEPEVLPEEELNTMKPS 299
>gnl|CDD|234172 TIGR03345, VI_ClpV1, type VI secretion ATPase, ClpV1 family.
Members of this protein family are homologs of ClpB, an
ATPase associated with chaperone-related functions.
These ClpB homologs, designated ClpV1, are a key
component of the bacterial pathogenicity-associated type
VI secretion system [Protein fate, Protein and peptide
secretion and trafficking, Cellular processes,
Pathogenesis].
Length = 852
Score = 26.1 bits (58), Expect = 9.8
Identities = 8/50 (16%), Positives = 19/50 (38%), Gaps = 5/50 (10%)
Query: 115 KEEEDEDEEQEEEEEQEEEEEQEEQEE-----EEEEEEEEEEEEEEDSRI 159
+ E E + E ++E+E E E E + + +++ +
Sbjct: 456 RAELAALEAELAALEARWQQEKELVEAILALRAELEADADAPADDDAALR 505
>gnl|CDD|236278 PRK08506, PRK08506, replicative DNA helicase; Provisional.
Length = 472
Score = 26.1 bits (58), Expect = 9.8
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 115 KEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEE 147
KE E++++E++ ++E +EE Q + EE E
Sbjct: 391 KEREEKEKEKKAKKEGKEERRIHFQNKSIEEAE 423
>gnl|CDD|237430 PRK13568, hofQ, putative outer membrane porin HofQ; Provisional.
Length = 381
Score = 26.2 bits (58), Expect = 9.9
Identities = 6/21 (28%), Positives = 14/21 (66%)
Query: 129 EQEEEEEQEEQEEEEEEEEEE 149
EQE +E Q++ +++ +E+
Sbjct: 59 EQEIQERQQKTKQQAAPQEQM 79
>gnl|CDD|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168). This
family consists of several hypothetical eukaryotic
proteins of unknown function.
Length = 142
Score = 25.4 bits (56), Expect = 9.9
Identities = 16/46 (34%), Positives = 30/46 (65%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
K K+K++ + ++EE+E + EE ++EEE EE+++EE E +
Sbjct: 96 KKKKKKKAKKGNKKEEKEGSKSSEESSDEEEEGEEDKQEEPVEIME 141
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 26.3 bits (58), Expect = 9.9
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
E+ ++E EE+ E+ E EE +E +E+ + ++ +EE + ED
Sbjct: 523 LEEALKEELEEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRL 568
>gnl|CDD|179334 PRK01770, PRK01770, sec-independent translocase; Provisional.
Length = 171
Score = 25.9 bits (57), Expect = 9.9
Identities = 3/49 (6%), Positives = 14/49 (28%)
Query: 109 MIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
M + + ++ ++ ++ E E + + +
Sbjct: 92 MKRSYAANDPEKASDEAHTIHNPVVKDNEAAHEGVTPAAAQTQASSPEQ 140
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.309 0.131 0.380
Gapped
Lambda K H
0.267 0.0812 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,577,169
Number of extensions: 832404
Number of successful extensions: 31334
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17337
Number of HSP's successfully gapped: 5473
Length of query: 161
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 72
Effective length of database: 6,990,096
Effective search space: 503286912
Effective search space used: 503286912
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (24.8 bits)