RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7599
(161 letters)
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
discoideum, class-I myosin MyoE [TaxId: 44689]}
Length = 684
Score = 77.8 bits (191), Expect = 5e-18
Identities = 32/100 (32%), Positives = 53/100 (53%)
Query: 1 MYLQLDIGIHRSLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKE 60
+ +G+ + + + FEQL IN+ NE LQ F + + EQEEY +E
Sbjct: 362 TIINCTTEKGPVIGILDIYGFEVFQNNSFEQLNINFCNEKLQQLFIELTLKSEQEEYVRE 421
Query: 61 GIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANWSRGN 100
GI W++IE+ +N +L+E KP GL+ +LD+ ++
Sbjct: 422 GIEWKNIEYFNNKPICELIEKKPIGLISLLDEACLIAKST 461
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 794
Score = 74.0 bits (181), Expect = 1e-16
Identities = 34/92 (36%), Positives = 49/92 (53%)
Query: 2 YLQLDIGIHRSLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEG 61
L +GV + + + FEQLCIN+ NE LQ +FN H+F EQEEY KEG
Sbjct: 399 QLDTKQPRQYFIGVLDIAGFEIFDFNSFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEG 458
Query: 62 IRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQ 93
I W I+F + + KP G+ +L+++
Sbjct: 459 IEWEFIDFGMDLAACIELIEKPMGIFSILEEE 490
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
scallop (Aequipecten irradians) [TaxId: 31199]}
Length = 789
Score = 71.7 bits (175), Expect = 7e-16
Identities = 36/100 (36%), Positives = 54/100 (54%)
Query: 1 MYLQLDIGIHRSLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKE 60
L + +GV + + + FEQLCINY NE LQ +FN H+F EQEEY KE
Sbjct: 396 KTLDTKAKRNYYIGVLDIAGFEIFDFNSFEQLCINYTNERLQQFFNHHMFILEQEEYKKE 455
Query: 61 GIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANWSRGN 100
GI W I+F + + KP G+L +L+++ + + +
Sbjct: 456 GIAWEFIDFGMDLQMCIDLIEKPMGILSILEEECMFPKAD 495
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 710
Score = 70.1 bits (171), Expect = 2e-15
Identities = 37/94 (39%), Positives = 54/94 (57%), Gaps = 3/94 (3%)
Query: 10 HRSLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF 69
LG+ + + + + FEQLCINY NE LQ FN +F EQEEY +EGI W I+F
Sbjct: 379 ASFLGILDIAGFEIFEINSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDF 438
Query: 70 S-DNTLCLQLVEG--KPNGLLCVLDDQANWSRGN 100
D C++L+E P G+L +LD++ + +
Sbjct: 439 GLDLQPCIELIERPTNPPGVLALLDEECWFPKAT 472
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
(Gallus gallus), Va isoform [TaxId: 9031]}
Length = 730
Score = 67.9 bits (165), Expect = 2e-14
Identities = 41/84 (48%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Query: 10 HRSLGVFKTSLVKHLKGSCFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF 69
H +GV + + + FEQ CINYANE LQ FN HVF+ EQEEY KE I W I+F
Sbjct: 368 HSFIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDF 427
Query: 70 SDNTLCLQLVEGKPNGLLCVLDDQ 93
DN C+ L+E K G+L +LD++
Sbjct: 428 YDNQPCINLIEAK-MGVLDLLDEE 450
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
{Dictyostelium discoideum [TaxId: 44689]}
Length = 712
Score = 61.6 bits (149), Expect = 2e-12
Identities = 36/75 (48%), Positives = 50/75 (66%), Gaps = 2/75 (2%)
Query: 28 CFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEG-KPNG 85
FEQLCINY NE LQ +FN H+F+ EQEEY KE I W I+F D+ + L++G +P G
Sbjct: 418 SFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPG 477
Query: 86 LLCVLDDQANWSRGN 100
+L +LD+Q+ +
Sbjct: 478 ILALLDEQSVFPNAT 492
>d1ofcx3 a.187.1.1 (X:697-798) HAND domain of the nucleosome
remodeling ATPase ISWI {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 102
Score = 31.7 bits (72), Expect = 0.010
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
+ E D + + EEQ + +E E EEE +E+E +
Sbjct: 60 KNTELGSDATKVQREEQRKIDEAEPLTEEEIQEKENLLSQ 99
Score = 27.5 bits (61), Expect = 0.30
Identities = 10/39 (25%), Positives = 21/39 (53%)
Query: 115 KEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
K ++ + + + Q EE+ + ++ E EEE +E+E
Sbjct: 57 KVPKNTELGSDATKVQREEQRKIDEAEPLTEEEIQEKEN 95
Score = 27.1 bits (60), Expect = 0.43
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 122 EEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRIL 160
+ E + ++EEQ + +E E EEE +E +L
Sbjct: 59 PKNTELGSDATKVQREEQRKIDEAEPLTEEEIQEKENLL 97
Score = 27.1 bits (60), Expect = 0.47
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 120 EDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
++ E + + + EEQ + +E E EEE +E+E
Sbjct: 60 KNTELGSDATKVQREEQRKIDEAEPLTEEEIQEKEN 95
Score = 25.9 bits (57), Expect = 1.2
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 118 EDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
E + + + EE+++ E E EEE +E+E
Sbjct: 59 PKNTELGSDATKVQREEQRKIDEAEPLTEEEIQEKEN 95
Score = 25.2 bits (55), Expect = 2.5
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 113 KEKEEEDEDEEQEEEEEQEE--EEEQEEQEEEEEE 145
+ + EEQ + +E E EEE +E+E +
Sbjct: 65 GSDATKVQREEQRKIDEAEPLTEEEIQEKENLLSQ 99
>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 301
Score = 31.5 bits (71), Expect = 0.034
Identities = 12/44 (27%), Positives = 24/44 (54%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
+E+ + E+ + +E E + E +EEE+ + + EEE+ I
Sbjct: 73 QEQPKPEQIAKGQEIVESLNETELLVDEEEKAQNDSEEEQVKGI 116
Score = 27.3 bits (60), Expect = 0.96
Identities = 10/38 (26%), Positives = 20/38 (52%)
Query: 115 KEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEE 152
K E+ ++ E E E +E+E+ + + EEE+ +
Sbjct: 77 KPEQIAKGQEIVESLNETELLVDEEEKAQNDSEEEQVK 114
Score = 26.5 bits (58), Expect = 1.8
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 112 PKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEE 150
PK ++ E E E E ++EE+ + + EEE+ +
Sbjct: 76 PKPEQIAKGQEIVESLNETELLVDEEEKAQNDSEEEQVK 114
Score = 26.1 bits (57), Expect = 2.1
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
+ + E + QE E E E ++EE+ + + EEE+ +
Sbjct: 75 QPKPEQIAKGQEIVESLNETELLVDEEEKAQNDSEEEQVK 114
>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato
(Solanum tuberosum) [TaxId: 4113]}
Length = 364
Score = 30.0 bits (66), Expect = 0.11
Identities = 8/40 (20%), Positives = 18/40 (45%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEE 150
P + E ++ +E+ + ++EE EE ++E
Sbjct: 325 DPSKNVSSKEVARLKKLVSYWKEQAGRKGDDEELEEIQDE 364
Score = 28.4 bits (62), Expect = 0.44
Identities = 9/43 (20%), Positives = 19/43 (44%)
Query: 110 IKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEE 152
I + E ++ +EQ ++ ++EE EE ++E
Sbjct: 322 IVNDPSKNVSSKEVARLKKLVSYWKEQAGRKGDDEELEEIQDE 364
>d1qkla_ a.143.1.2 (A:) RPB6 {Human (Homo sapiens) [TaxId: 9606]}
Length = 127
Score = 28.6 bits (64), Expect = 0.20
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
E++ D + ++ E++E + E EEE +E E E
Sbjct: 4 NEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGER 44
Score = 27.1 bits (60), Expect = 0.56
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 125 EEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRILI 161
E+ ++ + E++E ++ E EEE +E+ IL
Sbjct: 4 NEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILP 40
Score = 27.1 bits (60), Expect = 0.61
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 121 DEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
D E + + ++ E++E ++ E EEE +E E
Sbjct: 3 DNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILP 40
Score = 26.3 bits (58), Expect = 1.1
Identities = 10/40 (25%), Positives = 20/40 (50%)
Query: 119 DEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
D ++ + ++ + EE++ + E EEE +E E S
Sbjct: 3 DNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSG 42
Score = 25.9 bits (57), Expect = 1.4
Identities = 9/44 (20%), Positives = 20/44 (45%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
+ ED + + ++ +E+E + + EEE +E E +
Sbjct: 3 DNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQ 46
Score = 25.5 bits (56), Expect = 1.9
Identities = 11/43 (25%), Positives = 20/43 (46%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
E + +D + EE+E ++ E E+E +E E E +
Sbjct: 5 EDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQA 47
Score = 25.2 bits (55), Expect = 2.4
Identities = 9/42 (21%), Positives = 20/42 (47%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
++ D D+ + EE++ ++ + +EE +E E E
Sbjct: 4 NEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERP 45
Score = 25.2 bits (55), Expect = 2.6
Identities = 11/44 (25%), Positives = 19/44 (43%)
Query: 118 EDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRILI 161
++ED ++ + EE+E + E EEE +E E
Sbjct: 3 DNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQ 46
Score = 25.2 bits (55), Expect = 2.8
Identities = 10/48 (20%), Positives = 22/48 (45%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRIL 160
+ ++ E++E ++ E EEE QE E E + ++ + +
Sbjct: 10 GDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRITTPYM 57
>d1gsma2 b.1.1.4 (A:91-206) Mucosal addressin cell adhesion
molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId:
9606]}
Length = 116
Score = 26.8 bits (59), Expect = 0.75
Identities = 13/54 (24%), Positives = 24/54 (44%)
Query: 99 GNPMVSCVFWMIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEE 152
G+P V+C + P + +E + + E +EEEEE + +E+
Sbjct: 16 GDPEVACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDEDV 69
Score = 25.7 bits (56), Expect = 1.9
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 131 EEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+E E + E +EEEEE + +ED
Sbjct: 43 GQELEGAQALGPEVQEEEEEPQGDEDV 69
Score = 25.7 bits (56), Expect = 2.0
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 129 EQEEEEEQEEQEEEEEEEEEEEEEEEE 155
QE E Q E +EEEEE + +E+
Sbjct: 43 GQELEGAQALGPEVQEEEEEPQGDEDV 69
Score = 24.5 bits (53), Expect = 4.9
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 127 EEEQEEEEEQEEQEEEEEEEEEEEEEE 153
+E E + + +EEEEE + +E+
Sbjct: 43 GQELEGAQALGPEVQEEEEEPQGDEDV 69
>d1jfib_ a.22.1.3 (B:) Negative cofactor 2, NC2, beta chain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 135
Score = 26.8 bits (59), Expect = 0.81
Identities = 7/42 (16%), Positives = 19/42 (45%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
++ + E E+E +Q+E + +++ E ++E
Sbjct: 91 LKRRKASSRLENLGIPEEELLRQQQELFAKARQQQAELAQQE 132
Score = 26.8 bits (59), Expect = 0.84
Identities = 8/41 (19%), Positives = 20/41 (48%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEE 151
K ++ E+ EEE +++E + +++ E ++E
Sbjct: 92 KRRKASSRLENLGIPEEELLRQQQELFAKARQQQAELAQQE 132
Score = 24.9 bits (54), Expect = 3.8
Identities = 8/46 (17%), Positives = 19/46 (41%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
K + E EEE +++QE + +++ E +++
Sbjct: 87 KTVALKRRKASSRLENLGIPEEELLRQQQELFAKARQQQAELAQQE 132
Score = 24.5 bits (53), Expect = 5.3
Identities = 6/44 (13%), Positives = 19/44 (43%)
Query: 109 MIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEE 152
+ + K + EEE ++++ + +++ E ++E
Sbjct: 89 VALKRRKASSRLENLGIPEEELLRQQQELFAKARQQQAELAQQE 132
>d1siga_ a.177.1.1 (A:) Sigma70 {Escherichia coli [TaxId: 562]}
Length = 334
Score = 27.6 bits (60), Expect = 0.82
Identities = 10/40 (25%), Positives = 23/40 (57%)
Query: 118 EDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
D + E++ + QE+ +++E+E+EE+ ++DS
Sbjct: 54 VDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDS 93
Score = 27.2 bits (59), Expect = 0.89
Identities = 9/45 (20%), Positives = 24/45 (53%)
Query: 114 EKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSR 158
EED + +E+ ++ E+E+EE+ +++ ++++S
Sbjct: 56 PNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSI 100
Score = 24.5 bits (52), Expect = 8.1
Identities = 9/39 (23%), Positives = 18/39 (46%)
Query: 119 DEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDS 157
+ EE+ E +E+ +++E+E+EED
Sbjct: 51 TGFVDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDG 89
>d1od5a1 b.82.1.2 (A:7-251) Seed storage 7S protein {Soybean
(Glycine max), glycinin A3B4 [TaxId: 3847]}
Length = 245
Score = 26.8 bits (59), Expect = 1.2
Identities = 4/45 (8%), Positives = 15/45 (33%)
Query: 104 SCVFWMIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEE 148
P E ++ ++Q +++ ++ ++ E
Sbjct: 69 KGAIGFAFPGCPETFEKPQQQSSRRGSRSQQQLQDSHQKIRHFNE 113
>d1qs0a_ c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B), PP
module {Pseudomonas putida [TaxId: 303]}
Length = 407
Score = 26.8 bits (58), Expect = 1.3
Identities = 11/64 (17%), Positives = 22/64 (34%)
Query: 91 DDQANWSRGNPMVSCVFWMIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEE 150
DD +++ G+P+ +IK EE+ E E ++E ++
Sbjct: 324 DDWSHFPLGDPIARLKQHLIKIGHWSEEEHQATTAEFEAAVIAAQKEAEQYGTLANGHIP 383
Query: 151 EEEE 154
Sbjct: 384 SAAS 387
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 368
Score = 26.8 bits (58), Expect = 1.5
Identities = 7/35 (20%), Positives = 15/35 (42%)
Query: 126 EEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRIL 160
+ +E E+Q E E +E+ + + + L
Sbjct: 2 RQRTEELLRCNEQQAAELETCKEQLFQSNMERKEL 36
Score = 26.4 bits (57), Expect = 1.9
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 116 EEEDEDEEQEEEEEQEEEEEQEEQEEEEEEE 146
+ E+ + E++ E E +EQ + E
Sbjct: 2 RQRTEELLRCNEQQAAELETCKEQLFQSNME 32
Score = 26.0 bits (56), Expect = 2.1
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 124 QEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
++ EE EQ+ E E +E+ + E
Sbjct: 2 RQRTEELLRCNEQQAAELETCKEQLFQSNME 32
Score = 25.3 bits (54), Expect = 4.4
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 123 EQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
Q EE E+Q + E +E+ + E
Sbjct: 2 RQRTEELLRCNEQQAAELETCKEQLFQSNME 32
>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
DNA-binding fragment {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 223
Score = 26.2 bits (58), Expect = 2.0
Identities = 6/28 (21%), Positives = 19/28 (67%)
Query: 121 DEEQEEEEEQEEEEEQEEQEEEEEEEEE 148
++E++++ +E+++ + E E+ EE+
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEED 129
Score = 23.9 bits (52), Expect = 9.8
Identities = 8/28 (28%), Positives = 19/28 (67%)
Query: 128 EEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
+ Q+E+++Q +E+++ E E+ EE+
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEED 129
>d2es4d1 a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB)
{Burkholderia glumae [TaxId: 337]}
Length = 280
Score = 26.2 bits (57), Expect = 2.2
Identities = 3/42 (7%), Positives = 12/42 (28%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEE 154
+ + E++ Q + + + ++ E
Sbjct: 227 WQTRYQAYAAERDRIAAQGLAPQDRDARIAQLRQQTFTAPGE 268
Score = 25.0 bits (54), Expect = 4.6
Identities = 2/43 (4%), Positives = 12/43 (27%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEE 155
E++ ++ + + +++ E +
Sbjct: 236 AERDRIAAQGLAPQDRDARIAQLRQQTFTAPGEAIRAASLDRG 278
>d1qkra_ a.24.9.1 (A:) Vinculin {Chicken (Gallus gallus) [TaxId:
9031]}
Length = 181
Score = 25.6 bits (56), Expect = 2.8
Identities = 6/41 (14%), Positives = 16/41 (39%)
Query: 121 DEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEEDSRILI 161
+E+ E++ E Q + +E + + + I+
Sbjct: 1 KDEEFPEQKAGEAINQPMMMAARQLHDEARKWSSKGNDIIA 41
>d1whga_ b.34.10.1 (A:) Tubulin-specific chaperone B (SKAP1) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 113
Score = 24.8 bits (54), Expect = 3.6
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 132 EEEEQEEQEEEEEEEEEEEEEEEEDSRI 159
EE + +QE E + EE+ + +
Sbjct: 8 NEELRAQQEAEAAQRLSEEKAQASAISV 35
Score = 24.5 bits (53), Expect = 4.9
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 125 EEEEEQEEEEEQEEQEEEEEEEEE 148
EE ++E E ++ EE+ +
Sbjct: 8 NEELRAQQEAEAAQRLSEEKAQAS 31
Score = 24.1 bits (52), Expect = 6.5
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 131 EEEEEQEEQEEEEEEEEEEEEEE 153
EE Q+E E + EE+ +
Sbjct: 9 EELRAQQEAEAAQRLSEEKAQAS 31
>d2a9ua1 a.118.23.1 (A:6-139) Ubiquitin carboxyl-terminal hydrolase
8, USH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 134
Score = 24.8 bits (54), Expect = 3.7
Identities = 7/36 (19%), Positives = 20/36 (55%)
Query: 109 MIKPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEE 144
+ K +E E +++ EE++ +EE + +++ +
Sbjct: 99 RLSESLKLRYEEAEVRKKLEEKDRQEEAQRLQQKRQ 134
>d1e93a_ e.5.1.1 (A:) Catalase I {Proteus mirabilis [TaxId: 584]}
Length = 476
Score = 25.2 bits (55), Expect = 4.0
Identities = 8/39 (20%), Positives = 10/39 (25%)
Query: 34 INYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDN 72
I Y + Q F+ W H E D
Sbjct: 377 ITYEPNSGGVFQEQPDFKEPPLSIEGAADHWNHREDEDY 415
>d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal
domain {Bacillus stearothermophilus [TaxId: 1422]}
Length = 323
Score = 25.3 bits (54), Expect = 4.4
Identities = 4/16 (25%), Positives = 7/16 (43%)
Query: 140 EEEEEEEEEEEEEEEE 155
E E++ E+ E
Sbjct: 306 EAEDKTEKLAAALEHH 321
Score = 24.5 bits (52), Expect = 8.1
Identities = 3/16 (18%), Positives = 7/16 (43%)
Query: 139 QEEEEEEEEEEEEEEE 154
+ E++ E+ E
Sbjct: 306 EAEDKTEKLAAALEHH 321
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 387
Score = 25.0 bits (54), Expect = 4.5
Identities = 9/44 (20%), Positives = 17/44 (38%)
Query: 113 KEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEEEED 156
+ + +E E + E + + E + E + E E E E
Sbjct: 319 QHRLDEVRREIELAERQYDLNRAAELRYGELPKLEAEVEALSEK 362
>d1d7qa_ b.40.4.5 (A:) Translation initiation factor-1a, eIF1a
{Human (Homo sapiens) [TaxId: 9606]}
Length = 143
Score = 24.4 bits (53), Expect = 5.7
Identities = 6/48 (12%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 91 DDQANWSRGNPMVSCVFWMIKPKEKEEEDEDEEQEEEEEQEEEEEQEE 138
D+A + + I + +D+E + ++ +++E+ ++
Sbjct: 96 ADEARSLKAYGELP-EHAKINETDTFGPGDDDEIQFDDIGDDDEDIDD 142
>d2e50a1 d.305.1.1 (A:1-222) Protein SET {Human (Homo sapiens)
[TaxId: 9606]}
Length = 222
Score = 24.5 bits (53), Expect = 6.2
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 111 KPKEKEEEDEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
K + D +E E+E+QE E +E + E + E+ EE
Sbjct: 10 KKELNSNHDGADETSEKEQQEAIEHIDEVQNEIDRLNEQASEE 52
>d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 250
Score = 24.3 bits (52), Expect = 7.9
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 132 EEEEQEEQEEEEEEEEEEEEEEE 154
+++E E+ ++ EEEE + E E+
Sbjct: 228 KQKEVEQLIKKHEEEEAKAEREK 250
Score = 24.3 bits (52), Expect = 9.3
Identities = 7/35 (20%), Positives = 18/35 (51%)
Query: 119 DEDEEQEEEEEQEEEEEQEEQEEEEEEEEEEEEEE 153
+ + +++E ++ ++ EEEE + E E+
Sbjct: 216 TRENGKTVIRVLKQKEVEQLIKKHEEEEAKAEREK 250
>d2gysa1 b.1.2.1 (A:1-103) Common beta-chain in the GM-CSF, IL-3 and
IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 23.6 bits (51), Expect = 8.5
Identities = 11/36 (30%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 73 TLCLQLVEGKPNGLLCVLDDQANWSRGNPMVSCVFW 108
TL ++ E + C L D WS P CV
Sbjct: 36 TLIRRVNEDLLEPVSCDLSDDMPWSA-CPHPRCVPR 70
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.309 0.131 0.380
Gapped
Lambda K H
0.267 0.0422 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 642,876
Number of extensions: 32531
Number of successful extensions: 917
Number of sequences better than 10.0: 1
Number of HSP's gapped: 529
Number of HSP's successfully gapped: 276
Length of query: 161
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 83
Effective length of database: 1,336,656
Effective search space: 110942448
Effective search space used: 110942448
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 49 (23.4 bits)