Query psy760
Match_columns 511
No_of_seqs 570 out of 2625
Neff 8.1
Searched_HMMs 46136
Date Fri Aug 16 22:31:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy760.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/760hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1238|consensus 100.0 3.4E-69 7.5E-74 564.6 31.5 399 64-472 52-484 (623)
2 PRK02106 choline dehydrogenase 100.0 3.3E-53 7.2E-58 461.7 33.6 384 67-470 3-409 (560)
3 TIGR01810 betA choline dehydro 100.0 2.1E-52 4.6E-57 452.9 33.1 380 71-470 1-402 (532)
4 PF00732 GMC_oxred_N: GMC oxid 100.0 1.8E-51 3.9E-56 413.7 13.3 288 70-366 1-295 (296)
5 COG2303 BetA Choline dehydroge 100.0 2E-48 4.3E-53 419.7 26.7 384 65-465 3-403 (542)
6 PLN02785 Protein HOTHEAD 100.0 1.4E-45 3.1E-50 399.9 29.1 274 67-378 53-339 (587)
7 TIGR02462 pyranose_ox pyranose 99.9 5.9E-25 1.3E-29 234.9 23.1 273 70-378 1-326 (544)
8 COG2081 Predicted flavoprotein 99.9 1.9E-24 4.2E-29 216.3 4.0 309 68-491 2-321 (408)
9 PF03486 HI0933_like: HI0933-l 99.9 1.2E-24 2.7E-29 226.3 -5.6 305 70-490 1-327 (409)
10 TIGR00275 flavoprotein, HI0933 99.7 8.6E-19 1.9E-23 183.6 -0.2 217 267-504 106-341 (400)
11 PRK06481 fumarate reductase fl 99.6 1.9E-14 4.1E-19 155.3 19.3 60 270-332 194-254 (506)
12 PRK07121 hypothetical protein; 99.6 4.8E-14 1E-18 151.9 17.2 66 268-334 179-244 (492)
13 PRK12845 3-ketosteroid-delta-1 99.6 5.2E-14 1.1E-18 153.3 17.5 60 271-332 222-281 (564)
14 PRK12835 3-ketosteroid-delta-1 99.6 7.3E-14 1.6E-18 152.9 17.8 63 269-332 216-278 (584)
15 PRK12844 3-ketosteroid-delta-1 99.5 1.1E-13 2.4E-18 150.9 15.8 63 269-333 211-273 (557)
16 PRK12837 3-ketosteroid-delta-1 99.5 2.6E-13 5.6E-18 146.8 17.1 63 271-335 179-242 (513)
17 PF00890 FAD_binding_2: FAD bi 99.5 9.4E-14 2E-18 146.5 13.2 62 269-334 144-207 (417)
18 PRK08274 tricarballylate dehyd 99.5 1.8E-13 3.8E-18 146.6 15.1 70 269-341 134-204 (466)
19 PLN00128 Succinate dehydrogena 99.4 9.8E-13 2.1E-17 145.0 15.2 59 271-331 192-252 (635)
20 PRK11101 glpA sn-glycerol-3-ph 99.4 4.9E-12 1.1E-16 137.8 19.0 200 68-339 5-220 (546)
21 PF01266 DAO: FAD dependent ox 99.4 2.2E-13 4.8E-18 139.4 8.0 199 71-339 1-212 (358)
22 PRK07843 3-ketosteroid-delta-1 99.4 4.8E-12 1E-16 138.2 18.3 64 270-335 212-275 (557)
23 PRK07395 L-aspartate oxidase; 99.4 1.7E-12 3.6E-17 141.3 14.4 58 271-329 139-197 (553)
24 PRK06175 L-aspartate oxidase; 99.4 2.6E-12 5.6E-17 136.1 15.4 57 271-330 133-190 (433)
25 PRK06452 sdhA succinate dehydr 99.4 1.6E-12 3.4E-17 142.2 13.7 56 271-329 141-198 (566)
26 PRK08958 sdhA succinate dehydr 99.4 1.8E-12 3.8E-17 142.2 13.3 60 269-330 146-207 (588)
27 TIGR01813 flavo_cyto_c flavocy 99.4 7.5E-12 1.6E-16 133.0 17.7 63 268-332 132-195 (439)
28 PRK06134 putative FAD-binding 99.4 7.4E-12 1.6E-16 137.4 17.5 62 271-334 222-283 (581)
29 PRK07573 sdhA succinate dehydr 99.4 3.1E-12 6.8E-17 141.4 14.3 56 272-330 176-233 (640)
30 PRK07804 L-aspartate oxidase; 99.4 7.3E-12 1.6E-16 136.3 16.7 60 268-329 146-210 (541)
31 PRK12843 putative FAD-binding 99.4 1E-11 2.2E-16 136.2 17.2 63 269-333 224-286 (578)
32 PRK09078 sdhA succinate dehydr 99.4 7.2E-12 1.6E-16 137.7 15.8 60 269-330 152-213 (598)
33 PRK12834 putative FAD-binding 99.4 1.3E-11 2.8E-16 134.8 17.3 36 67-103 2-37 (549)
34 PTZ00306 NADH-dependent fumara 99.4 1.2E-11 2.5E-16 145.3 17.7 53 279-332 560-623 (1167)
35 PRK12839 hypothetical protein; 99.4 1.1E-11 2.3E-16 135.6 16.2 62 271-333 219-280 (572)
36 PRK12842 putative succinate de 99.4 1.5E-11 3.2E-16 134.9 17.0 61 272-334 220-280 (574)
37 PTZ00139 Succinate dehydrogena 99.4 4.2E-12 9.1E-17 139.9 12.7 60 269-330 169-230 (617)
38 TIGR03329 Phn_aa_oxid putative 99.3 6.7E-12 1.5E-16 134.2 13.6 204 67-334 22-241 (460)
39 PLN02815 L-aspartate oxidase 99.3 1.1E-11 2.4E-16 135.6 15.1 53 277-330 167-223 (594)
40 PRK12409 D-amino acid dehydrog 99.3 2.4E-11 5.1E-16 128.0 15.9 34 70-104 2-35 (410)
41 TIGR01373 soxB sarcosine oxida 99.3 1.9E-11 4.1E-16 128.6 15.1 62 272-340 189-250 (407)
42 PRK08641 sdhA succinate dehydr 99.3 1.2E-11 2.6E-16 135.8 13.9 49 280-330 151-201 (589)
43 PRK05945 sdhA succinate dehydr 99.3 1.7E-11 3.6E-16 134.5 14.9 60 268-330 137-198 (575)
44 PRK06263 sdhA succinate dehydr 99.3 2.4E-11 5.1E-16 132.5 16.0 59 270-330 138-198 (543)
45 PRK09231 fumarate reductase fl 99.3 1.9E-11 4.1E-16 134.0 14.9 50 278-330 146-197 (582)
46 PLN02661 Putative thiazole syn 99.3 2.8E-11 6.1E-16 122.4 14.6 68 29-103 50-126 (357)
47 TIGR01812 sdhA_frdA_Gneg succi 99.3 2.3E-11 5.1E-16 133.3 15.2 59 269-330 132-192 (566)
48 TIGR00551 nadB L-aspartate oxi 99.3 3.2E-11 6.9E-16 129.9 15.5 59 269-330 131-190 (488)
49 PRK11728 hydroxyglutarate oxid 99.3 6.4E-11 1.4E-15 124.1 17.0 64 269-341 152-215 (393)
50 PRK07057 sdhA succinate dehydr 99.3 4.2E-11 9.2E-16 131.5 16.2 59 270-330 152-212 (591)
51 COG0579 Predicted dehydrogenas 99.3 6.5E-11 1.4E-15 122.9 16.5 205 68-342 2-223 (429)
52 TIGR01176 fum_red_Fp fumarate 99.3 2.9E-11 6.3E-16 132.4 14.8 51 277-330 144-196 (580)
53 PRK08205 sdhA succinate dehydr 99.3 2.2E-11 4.7E-16 133.8 13.5 62 268-330 142-207 (583)
54 PRK08626 fumarate reductase fl 99.3 2.4E-11 5.2E-16 134.7 13.7 57 271-330 163-221 (657)
55 PRK07803 sdhA succinate dehydr 99.3 1.7E-11 3.8E-16 135.4 12.4 47 281-330 166-214 (626)
56 TIGR01377 soxA_mon sarcosine o 99.3 1E-10 2.2E-15 121.7 16.7 34 70-104 1-34 (380)
57 PRK00711 D-amino acid dehydrog 99.3 9.3E-11 2E-15 123.6 16.4 60 271-338 206-265 (416)
58 PRK06069 sdhA succinate dehydr 99.3 3E-11 6.4E-16 132.7 12.4 55 272-329 143-200 (577)
59 PRK08275 putative oxidoreducta 99.3 7.6E-11 1.7E-15 128.8 15.4 61 268-330 139-201 (554)
60 PRK09077 L-aspartate oxidase; 99.3 8.4E-11 1.8E-15 127.9 15.4 53 277-330 150-208 (536)
61 PRK08071 L-aspartate oxidase; 99.2 4.6E-11 1E-15 129.1 12.8 56 271-330 135-191 (510)
62 PRK06854 adenylylsulfate reduc 99.2 2E-10 4.3E-15 126.6 18.1 56 271-329 137-195 (608)
63 PTZ00383 malate:quinone oxidor 99.2 3.1E-11 6.6E-16 129.2 10.8 63 271-341 216-284 (497)
64 PRK04176 ribulose-1,5-biphosph 99.2 1.2E-10 2.6E-15 114.7 13.8 57 270-328 108-172 (257)
65 TIGR01811 sdhA_Bsu succinate d 99.2 6.8E-11 1.5E-15 130.0 12.7 51 278-330 145-197 (603)
66 TIGR01320 mal_quin_oxido malat 99.2 2.6E-10 5.7E-15 122.2 15.9 66 271-340 183-250 (483)
67 TIGR00292 thiazole biosynthesi 99.2 1.5E-10 3.2E-15 113.8 12.8 58 269-327 103-168 (254)
68 PRK11259 solA N-methyltryptoph 99.2 6.3E-10 1.4E-14 115.5 16.2 35 69-104 3-37 (376)
69 PRK05257 malate:quinone oxidor 99.2 6.9E-10 1.5E-14 119.2 16.7 67 270-340 187-256 (494)
70 TIGR02061 aprA adenosine phosp 99.2 8.8E-10 1.9E-14 120.9 17.7 57 272-329 132-191 (614)
71 PRK07512 L-aspartate oxidase; 99.2 3.4E-10 7.3E-15 122.5 14.1 58 270-330 140-198 (513)
72 PRK13800 putative oxidoreducta 99.2 3.5E-10 7.5E-15 130.0 15.0 49 279-330 156-206 (897)
73 TIGR03364 HpnW_proposed FAD de 99.2 4E-10 8.8E-15 116.7 14.0 33 70-103 1-33 (365)
74 COG0578 GlpA Glycerol-3-phosph 99.1 1.1E-09 2.4E-14 116.1 17.3 76 276-356 174-254 (532)
75 TIGR03862 flavo_PP4765 unchara 99.1 6E-12 1.3E-16 129.5 -0.1 175 264-465 84-265 (376)
76 TIGR02485 CobZ_N-term precorri 99.1 4.1E-10 8.9E-15 119.5 13.3 65 268-335 125-189 (432)
77 PLN02464 glycerol-3-phosphate 99.1 1.7E-09 3.7E-14 119.5 18.1 65 272-338 238-304 (627)
78 PF01946 Thi4: Thi4 family; PD 99.1 4.9E-10 1.1E-14 104.8 11.5 36 68-104 16-51 (230)
79 COG1635 THI4 Ribulose 1,5-bisp 99.1 6.9E-10 1.5E-14 103.2 11.9 34 68-102 29-62 (262)
80 PRK08401 L-aspartate oxidase; 99.1 4.7E-10 1E-14 120.1 12.6 55 268-330 122-176 (466)
81 PRK13339 malate:quinone oxidor 99.1 8.7E-09 1.9E-13 110.2 19.0 60 277-340 196-257 (497)
82 PRK12266 glpD glycerol-3-phosp 99.0 7.8E-09 1.7E-13 111.9 18.8 61 274-339 163-226 (508)
83 PF12831 FAD_oxidored: FAD dep 99.0 1.5E-10 3.2E-15 122.6 5.3 63 271-339 95-157 (428)
84 PRK13369 glycerol-3-phosphate 99.0 7.4E-09 1.6E-13 112.0 18.1 61 274-339 163-225 (502)
85 KOG2820|consensus 99.0 2.9E-09 6.3E-14 104.8 12.0 65 271-340 158-223 (399)
86 COG1053 SdhA Succinate dehydro 99.0 4.6E-09 1E-13 113.8 14.4 99 229-329 96-202 (562)
87 COG0029 NadB Aspartate oxidase 99.0 1.7E-09 3.6E-14 111.8 9.9 101 227-329 89-196 (518)
88 PRK10157 putative oxidoreducta 99.0 1.3E-09 2.8E-14 115.4 8.8 66 267-341 109-174 (428)
89 PRK01747 mnmC bifunctional tRN 99.0 2.9E-09 6.3E-14 118.9 11.8 34 69-103 260-293 (662)
90 COG0644 FixC Dehydrogenases (f 99.0 5E-09 1.1E-13 109.9 12.4 64 269-340 98-161 (396)
91 COG3573 Predicted oxidoreducta 98.9 9.1E-09 2E-13 100.9 11.6 65 269-336 156-235 (552)
92 KOG0042|consensus 98.9 6.7E-09 1.4E-13 107.7 11.2 77 276-355 234-313 (680)
93 PRK05192 tRNA uridine 5-carbox 98.9 6.4E-09 1.4E-13 112.5 11.3 35 68-103 3-37 (618)
94 COG0665 DadA Glycine/D-amino a 98.9 3.6E-08 7.9E-13 102.6 16.8 37 67-104 2-38 (387)
95 PRK13977 myosin-cross-reactive 98.9 2.1E-08 4.7E-13 107.5 14.6 65 267-331 227-295 (576)
96 PRK10015 oxidoreductase; Provi 98.9 4.2E-09 9E-14 111.6 8.5 65 268-341 110-174 (429)
97 PF13738 Pyr_redox_3: Pyridine 98.9 1.4E-08 3.1E-13 95.9 10.8 64 268-338 84-147 (203)
98 PLN02172 flavin-containing mon 98.8 4E-08 8.6E-13 104.8 13.6 68 268-339 113-183 (461)
99 COG1233 Phytoene dehydrogenase 98.8 4E-08 8.8E-13 105.7 12.8 38 68-106 2-39 (487)
100 PTZ00363 rab-GDP dissociation 98.8 1.1E-07 2.4E-12 100.6 15.6 41 66-107 1-41 (443)
101 TIGR02032 GG-red-SF geranylger 98.8 6.4E-08 1.4E-12 96.5 12.0 34 70-104 1-34 (295)
102 COG3380 Predicted NAD/FAD-depe 98.7 2.2E-08 4.7E-13 96.0 7.4 83 279-367 116-213 (331)
103 KOG2415|consensus 98.7 2.9E-08 6.2E-13 100.0 8.2 74 264-339 181-268 (621)
104 PF01134 GIDA: Glucose inhibit 98.7 1.5E-08 3.2E-13 104.3 6.2 47 277-330 107-153 (392)
105 TIGR02730 carot_isom carotene 98.7 1.5E-07 3.3E-12 101.6 13.9 59 268-332 231-289 (493)
106 PRK06185 hypothetical protein; 98.7 1E-07 2.3E-12 100.2 12.2 66 271-341 113-179 (407)
107 PRK07364 2-octaprenyl-6-methox 98.6 2.9E-07 6.3E-12 97.0 13.6 39 65-104 14-52 (415)
108 KOG2844|consensus 98.6 3.3E-07 7.2E-12 97.4 12.8 201 65-338 35-251 (856)
109 KOG4254|consensus 98.6 3.1E-07 6.8E-12 93.7 11.6 61 266-332 264-324 (561)
110 PRK08773 2-octaprenyl-3-methyl 98.6 3E-07 6.5E-12 96.2 12.0 37 67-104 4-40 (392)
111 TIGR02023 BchP-ChlP geranylger 98.6 5.1E-07 1.1E-11 94.5 13.6 32 70-102 1-32 (388)
112 KOG2853|consensus 98.6 1.2E-06 2.6E-11 86.5 15.0 41 65-105 82-125 (509)
113 KOG1298|consensus 98.6 4.3E-07 9.3E-12 91.0 11.1 36 66-102 42-77 (509)
114 PLN00093 geranylgeranyl diphos 98.6 8.9E-07 1.9E-11 94.3 14.4 36 67-103 37-72 (450)
115 TIGR02734 crtI_fam phytoene de 98.5 1.9E-07 4.2E-12 101.0 8.9 61 268-334 221-281 (502)
116 PRK06847 hypothetical protein; 98.5 6.6E-07 1.4E-11 92.9 12.2 37 67-104 2-38 (375)
117 PRK07208 hypothetical protein; 98.5 2E-06 4.4E-11 92.4 16.3 41 66-107 1-41 (479)
118 TIGR00136 gidA glucose-inhibit 98.5 1E-06 2.3E-11 95.4 13.9 33 70-103 1-33 (617)
119 TIGR01424 gluta_reduc_2 glutat 98.5 2.5E-07 5.4E-12 98.6 9.0 33 69-102 2-34 (446)
120 KOG2404|consensus 98.5 2E-07 4.4E-12 91.2 7.5 49 280-331 159-208 (477)
121 TIGR02028 ChlP geranylgeranyl 98.5 1.1E-06 2.4E-11 92.3 13.4 33 70-103 1-33 (398)
122 PF01494 FAD_binding_3: FAD bi 98.5 1.9E-07 4.1E-12 95.4 7.3 36 69-105 1-36 (356)
123 PRK05675 sdhA succinate dehydr 98.5 1.1E-06 2.4E-11 96.4 13.7 60 269-330 129-190 (570)
124 PLN02985 squalene monooxygenas 98.5 1.8E-06 3.8E-11 93.6 14.8 36 67-103 41-76 (514)
125 TIGR02733 desat_CrtD C-3',4' d 98.5 1.4E-06 3.1E-11 94.0 13.9 62 268-332 234-297 (492)
126 COG2509 Uncharacterized FAD-de 98.5 2.9E-06 6.4E-11 87.2 15.1 41 65-105 14-58 (486)
127 PRK06467 dihydrolipoamide dehy 98.5 4.5E-07 9.7E-12 97.4 9.7 36 67-103 2-37 (471)
128 PRK08020 ubiF 2-octaprenyl-3-m 98.5 8.1E-07 1.8E-11 92.9 11.5 35 68-103 4-38 (391)
129 PF06039 Mqo: Malate:quinone o 98.5 2.9E-06 6.3E-11 88.0 15.0 65 272-340 188-254 (488)
130 PRK08243 4-hydroxybenzoate 3-m 98.5 1.1E-06 2.4E-11 92.1 12.3 35 69-104 2-36 (392)
131 PRK08244 hypothetical protein; 98.5 1.4E-06 3.1E-11 94.0 13.6 35 69-104 2-36 (493)
132 PRK06184 hypothetical protein; 98.5 2.5E-06 5.4E-11 92.4 15.3 35 69-104 3-37 (502)
133 TIGR03143 AhpF_homolog putativ 98.5 6.7E-07 1.4E-11 97.9 10.9 36 67-103 2-37 (555)
134 PRK11445 putative oxidoreducta 98.5 3.1E-06 6.7E-11 87.4 15.3 33 70-104 2-34 (351)
135 TIGR01421 gluta_reduc_1 glutat 98.5 9.2E-07 2E-11 94.4 11.2 34 68-102 1-34 (450)
136 PRK07333 2-octaprenyl-6-methox 98.5 2.1E-06 4.5E-11 90.1 13.6 35 69-104 1-37 (403)
137 PRK05714 2-octaprenyl-3-methyl 98.5 1.8E-06 3.8E-11 90.8 13.0 34 69-103 2-35 (405)
138 PRK07045 putative monooxygenas 98.4 1.6E-06 3.4E-11 90.7 12.5 36 68-104 4-39 (388)
139 PRK07608 ubiquinone biosynthes 98.4 1E-06 2.2E-11 92.0 11.0 36 68-104 4-39 (388)
140 PRK06116 glutathione reductase 98.4 5.2E-07 1.1E-11 96.3 9.0 35 67-102 2-36 (450)
141 PF00743 FMO-like: Flavin-bind 98.4 1.3E-06 2.9E-11 94.6 12.0 67 268-335 86-156 (531)
142 PRK05249 soluble pyridine nucl 98.4 1E-06 2.2E-11 94.4 10.8 35 68-103 4-38 (461)
143 PRK06370 mercuric reductase; V 98.4 7.2E-07 1.6E-11 95.6 9.6 37 66-103 2-38 (463)
144 TIGR03377 glycerol3P_GlpA glyc 98.4 4.2E-06 9.1E-11 91.0 15.6 120 213-339 67-199 (516)
145 PLN02697 lycopene epsilon cycl 98.4 1.4E-06 3.1E-11 94.1 11.8 35 67-102 106-140 (529)
146 PRK06834 hypothetical protein; 98.4 3.2E-06 7E-11 91.1 14.5 35 69-104 3-37 (488)
147 PRK06126 hypothetical protein; 98.4 7.3E-06 1.6E-10 89.7 17.5 36 67-103 5-40 (545)
148 TIGR03378 glycerol3P_GlpB glyc 98.4 3.4E-06 7.3E-11 88.0 14.0 62 272-337 269-330 (419)
149 PRK09126 hypothetical protein; 98.4 1.6E-06 3.4E-11 90.7 11.6 35 69-104 3-37 (392)
150 COG0654 UbiH 2-polyprenyl-6-me 98.4 7.5E-07 1.6E-11 93.2 9.2 33 69-102 2-34 (387)
151 PRK08013 oxidoreductase; Provi 98.4 8.8E-07 1.9E-11 93.1 9.6 35 69-104 3-37 (400)
152 COG1249 Lpd Pyruvate/2-oxoglut 98.4 9.9E-07 2.1E-11 93.3 9.9 36 67-103 2-37 (454)
153 PRK07190 hypothetical protein; 98.4 3.9E-06 8.4E-11 90.4 14.5 36 68-104 4-39 (487)
154 PRK05976 dihydrolipoamide dehy 98.4 1.3E-06 2.7E-11 94.0 10.7 36 66-102 1-36 (472)
155 PRK07251 pyridine nucleotide-d 98.4 1.7E-06 3.8E-11 92.0 11.6 34 69-103 3-36 (438)
156 PRK05732 2-octaprenyl-6-methox 98.4 1.2E-06 2.6E-11 91.6 10.2 34 68-102 2-38 (395)
157 COG0445 GidA Flavin-dependent 98.4 4.7E-07 1E-11 94.8 6.8 34 68-102 3-36 (621)
158 TIGR01988 Ubi-OHases Ubiquinon 98.4 2.2E-06 4.7E-11 89.1 11.9 34 71-105 1-34 (385)
159 PRK08010 pyridine nucleotide-d 98.4 2.3E-06 5E-11 91.1 12.0 34 69-103 3-36 (441)
160 KOG2665|consensus 98.4 2.2E-06 4.7E-11 84.0 10.5 214 65-340 44-267 (453)
161 TIGR01984 UbiH 2-polyprenyl-6- 98.4 6.9E-06 1.5E-10 85.5 15.3 33 71-104 1-34 (382)
162 PRK05329 anaerobic glycerol-3- 98.4 1.5E-05 3.3E-10 83.9 17.8 60 271-334 264-323 (422)
163 TIGR01292 TRX_reduct thioredox 98.4 2.6E-06 5.7E-11 85.2 11.5 33 70-103 1-33 (300)
164 PRK06416 dihydrolipoamide dehy 98.4 1.4E-06 3.1E-11 93.2 10.2 35 68-103 3-37 (462)
165 PRK06115 dihydrolipoamide dehy 98.4 2.5E-06 5.3E-11 91.6 11.7 33 69-102 3-35 (466)
166 TIGR02360 pbenz_hydroxyl 4-hyd 98.3 3.6E-06 7.9E-11 88.1 11.8 35 69-104 2-36 (390)
167 PRK07494 2-octaprenyl-6-methox 98.3 4.3E-06 9.4E-11 87.3 12.3 36 68-104 6-41 (388)
168 COG0492 TrxB Thioredoxin reduc 98.3 3.2E-06 6.9E-11 85.2 10.5 35 68-103 2-37 (305)
169 PRK06617 2-octaprenyl-6-methox 98.3 2.3E-06 5.1E-11 89.0 9.8 33 70-103 2-34 (374)
170 PLN02463 lycopene beta cyclase 98.3 7.4E-06 1.6E-10 87.1 13.7 36 67-103 26-61 (447)
171 PRK07588 hypothetical protein; 98.3 4.4E-06 9.5E-11 87.4 11.5 33 71-104 2-34 (391)
172 KOG1399|consensus 98.3 4.2E-06 9E-11 88.3 11.2 70 268-340 92-164 (448)
173 PRK06183 mhpA 3-(3-hydroxyphen 98.3 8.1E-06 1.8E-10 89.2 13.7 37 67-104 8-44 (538)
174 TIGR01350 lipoamide_DH dihydro 98.3 5.8E-06 1.3E-10 88.5 12.3 33 69-102 1-33 (461)
175 PRK07233 hypothetical protein; 98.3 7E-06 1.5E-10 86.8 12.6 36 71-107 1-36 (434)
176 COG2072 TrkA Predicted flavopr 98.3 6.4E-06 1.4E-10 87.6 12.2 38 66-104 5-43 (443)
177 PLN02507 glutathione reductase 98.3 4.4E-06 9.4E-11 90.3 11.1 34 67-101 23-56 (499)
178 PRK08850 2-octaprenyl-6-methox 98.3 4.5E-06 9.8E-11 87.8 10.8 34 68-102 3-36 (405)
179 TIGR03140 AhpF alkyl hydropero 98.3 3.3E-06 7.2E-11 91.7 10.0 34 67-101 210-243 (515)
180 PRK08163 salicylate hydroxylas 98.3 9E-06 2E-10 85.1 12.8 36 68-104 3-38 (396)
181 PRK06753 hypothetical protein; 98.3 5.7E-06 1.2E-10 85.9 11.1 33 71-104 2-34 (373)
182 PRK15317 alkyl hydroperoxide r 98.2 6.8E-06 1.5E-10 89.3 11.9 34 67-101 209-242 (517)
183 PRK14694 putative mercuric red 98.2 4.6E-06 1E-10 89.5 10.3 35 68-103 5-39 (468)
184 TIGR01816 sdhA_forward succina 98.2 1E-05 2.2E-10 88.8 13.0 60 268-330 121-182 (565)
185 PRK08132 FAD-dependent oxidore 98.2 2.4E-05 5.2E-10 85.7 15.6 37 67-104 21-57 (547)
186 TIGR01790 carotene-cycl lycope 98.2 8.8E-06 1.9E-10 85.0 11.7 33 71-104 1-33 (388)
187 PLN02546 glutathione reductase 98.2 3.8E-06 8.3E-11 91.6 9.1 33 68-101 78-110 (558)
188 PTZ00367 squalene epoxidase; P 98.2 9.6E-06 2.1E-10 88.6 11.9 35 68-103 32-66 (567)
189 PF05834 Lycopene_cycl: Lycope 98.2 7.9E-06 1.7E-10 85.1 10.7 33 71-104 1-35 (374)
190 PF04820 Trp_halogenase: Trypt 98.2 6.6E-06 1.4E-10 87.8 10.3 56 266-327 154-209 (454)
191 PRK07538 hypothetical protein; 98.2 7.1E-06 1.5E-10 86.6 10.4 33 71-104 2-34 (413)
192 TIGR02731 phytoene_desat phyto 98.2 2E-05 4.3E-10 84.2 13.8 54 272-327 219-274 (453)
193 PRK07236 hypothetical protein; 98.2 2.9E-05 6.3E-10 81.1 14.7 34 69-103 6-39 (386)
194 TIGR01372 soxA sarcosine oxida 98.2 1.7E-05 3.7E-10 92.4 13.9 36 68-104 162-197 (985)
195 TIGR02352 thiamin_ThiO glycine 98.2 5.9E-06 1.3E-10 84.2 8.9 114 211-334 73-197 (337)
196 TIGR02732 zeta_caro_desat caro 98.2 1.3E-05 2.8E-10 86.1 11.8 60 274-334 227-289 (474)
197 PTZ00058 glutathione reductase 98.2 2.8E-06 6.1E-11 92.7 6.5 35 68-103 47-81 (561)
198 PRK06996 hypothetical protein; 98.1 9.1E-06 2E-10 85.3 9.7 36 67-103 9-48 (398)
199 PF13450 NAD_binding_8: NAD(P) 98.1 3.8E-06 8.2E-11 65.1 4.3 32 74-106 1-32 (68)
200 PRK10262 thioredoxin reductase 98.1 3.4E-05 7.4E-10 78.5 12.3 35 67-102 4-38 (321)
201 PRK05868 hypothetical protein; 98.1 4.9E-05 1.1E-09 79.1 13.1 34 70-104 2-35 (372)
202 PRK06475 salicylate hydroxylas 98.0 5.3E-05 1.1E-09 79.6 13.2 34 70-104 3-36 (400)
203 PLN02487 zeta-carotene desatur 98.0 3.9E-05 8.5E-10 83.8 12.4 60 274-334 303-365 (569)
204 KOG2960|consensus 98.0 2.5E-06 5.5E-11 79.0 2.6 69 26-102 31-110 (328)
205 PRK08294 phenol 2-monooxygenas 98.0 3.5E-05 7.6E-10 85.6 11.9 40 65-104 28-67 (634)
206 TIGR01438 TGR thioredoxin and 98.0 1.5E-05 3.2E-10 85.9 8.3 33 69-102 2-34 (484)
207 KOG2311|consensus 98.0 1.2E-05 2.6E-10 82.7 7.0 35 67-102 26-60 (679)
208 PRK09897 hypothetical protein; 98.0 8.4E-05 1.8E-09 80.5 13.9 36 70-105 2-38 (534)
209 PRK14727 putative mercuric red 98.0 4.2E-05 9E-10 82.4 11.4 36 67-103 14-49 (479)
210 KOG2852|consensus 98.0 7.3E-06 1.6E-10 79.5 4.9 63 272-339 154-217 (380)
211 COG1231 Monoamine oxidase [Ami 98.0 0.00015 3.3E-09 75.1 14.7 39 67-106 5-43 (450)
212 PRK07845 flavoprotein disulfid 98.0 4.3E-05 9.2E-10 82.0 11.1 32 71-103 3-34 (466)
213 PLN02612 phytoene desaturase 98.0 0.00012 2.6E-09 80.4 14.8 38 68-106 92-129 (567)
214 PF13434 K_oxygenase: L-lysine 98.0 4E-05 8.7E-10 78.7 10.0 62 269-334 98-162 (341)
215 KOG1335|consensus 97.9 6.5E-05 1.4E-09 75.7 10.8 66 275-352 261-328 (506)
216 PRK12769 putative oxidoreducta 97.9 0.00016 3.5E-09 80.9 14.4 37 68-105 326-362 (654)
217 TIGR03452 mycothione_red mycot 97.8 8.3E-05 1.8E-09 79.5 10.2 32 69-103 2-33 (452)
218 PRK07846 mycothione reductase; 97.8 0.00015 3.2E-09 77.5 11.9 32 69-103 1-32 (451)
219 PRK06912 acoL dihydrolipoamide 97.7 0.00035 7.5E-09 74.9 13.2 32 71-103 2-33 (458)
220 PF13454 NAD_binding_9: FAD-NA 97.7 0.00056 1.2E-08 62.1 12.5 32 73-104 1-36 (156)
221 PRK08849 2-octaprenyl-3-methyl 97.7 3.1E-05 6.7E-10 80.9 4.6 34 69-103 3-36 (384)
222 TIGR03219 salicylate_mono sali 97.7 0.00089 1.9E-08 70.7 15.5 33 71-104 2-35 (414)
223 PRK07818 dihydrolipoamide dehy 97.7 3.3E-05 7.2E-10 82.9 4.7 35 68-103 3-37 (466)
224 PRK12775 putative trifunctiona 97.7 0.00029 6.3E-09 82.2 12.5 37 68-105 429-465 (1006)
225 TIGR00031 UDP-GALP_mutase UDP- 97.7 4E-05 8.7E-10 79.5 4.9 36 70-106 2-37 (377)
226 COG0562 Glf UDP-galactopyranos 97.7 5E-05 1.1E-09 75.0 4.7 37 69-106 1-37 (374)
227 TIGR03197 MnmC_Cterm tRNA U-34 97.6 0.00039 8.5E-09 72.5 11.7 56 271-335 140-195 (381)
228 COG2907 Predicted NAD/FAD-bind 97.6 0.00044 9.6E-09 69.0 11.1 36 69-106 8-43 (447)
229 PRK06327 dihydrolipoamide dehy 97.6 4.3E-05 9.4E-10 82.2 4.5 34 67-101 2-35 (475)
230 PF00070 Pyr_redox: Pyridine n 97.6 0.0005 1.1E-08 54.8 9.4 32 72-104 2-33 (80)
231 PLN02576 protoporphyrinogen ox 97.6 5.4E-05 1.2E-09 81.8 5.0 40 66-106 9-49 (496)
232 KOG0029|consensus 97.6 5.8E-05 1.3E-09 81.1 4.9 40 66-106 12-51 (501)
233 TIGR02053 MerA mercuric reduct 97.6 5.7E-05 1.2E-09 81.0 4.4 33 70-103 1-33 (463)
234 PRK13512 coenzyme A disulfide 97.6 0.00052 1.1E-08 73.1 11.5 34 71-104 3-37 (438)
235 PRK09564 coenzyme A disulfide 97.6 0.00034 7.5E-09 74.5 10.0 34 71-104 2-36 (444)
236 PTZ00052 thioredoxin reductase 97.6 6.8E-05 1.5E-09 81.1 4.6 34 68-102 4-37 (499)
237 TIGR01989 COQ6 Ubiquinone bios 97.6 7.5E-05 1.6E-09 79.5 4.8 34 70-103 1-37 (437)
238 PRK06292 dihydrolipoamide dehy 97.5 7E-05 1.5E-09 80.2 4.4 34 68-102 2-35 (460)
239 COG1252 Ndh NADH dehydrogenase 97.5 0.0029 6.3E-08 65.9 16.0 59 270-338 213-271 (405)
240 PLN02268 probable polyamine ox 97.5 8.9E-05 1.9E-09 78.7 4.8 36 71-107 2-37 (435)
241 PRK11883 protoporphyrinogen ox 97.5 7.9E-05 1.7E-09 79.3 4.3 35 71-106 2-38 (451)
242 KOG0405|consensus 97.5 0.00071 1.5E-08 67.6 10.5 36 66-102 17-52 (478)
243 TIGR01789 lycopene_cycl lycope 97.5 9.2E-05 2E-09 77.0 4.3 33 71-103 1-34 (370)
244 PRK13748 putative mercuric red 97.5 9.4E-05 2E-09 81.3 4.5 35 68-103 97-131 (561)
245 PLN02676 polyamine oxidase 97.5 0.00022 4.8E-09 76.9 7.1 38 68-106 25-63 (487)
246 TIGR00562 proto_IX_ox protopor 97.5 0.00011 2.3E-09 78.7 4.4 36 70-106 3-42 (462)
247 TIGR01423 trypano_reduc trypan 97.4 0.00011 2.3E-09 79.3 4.3 34 68-102 2-36 (486)
248 KOG0404|consensus 97.4 0.00057 1.2E-08 64.3 8.0 69 271-351 75-143 (322)
249 PF07992 Pyr_redox_2: Pyridine 97.4 0.00016 3.5E-09 67.8 4.6 32 71-103 1-32 (201)
250 PF06100 Strep_67kDa_ant: Stre 97.4 0.0045 9.9E-08 65.3 15.2 53 276-328 217-273 (500)
251 PTZ00153 lipoamide dehydrogena 97.3 0.00017 3.6E-09 80.2 4.3 34 68-102 115-148 (659)
252 PRK04965 NADH:flavorubredoxin 97.3 0.0024 5.3E-08 66.5 12.8 58 276-340 193-250 (377)
253 COG3349 Uncharacterized conser 97.3 0.00019 4.2E-09 75.5 4.3 36 71-107 2-37 (485)
254 PRK05335 tRNA (uracil-5-)-meth 97.3 0.00022 4.8E-09 74.5 4.3 35 70-105 3-37 (436)
255 PLN02568 polyamine oxidase 97.3 0.0003 6.4E-09 76.7 5.1 38 68-106 4-46 (539)
256 PRK09754 phenylpropionate diox 97.2 0.0028 6.2E-08 66.5 12.1 33 70-103 145-177 (396)
257 PLN02927 antheraxanthin epoxid 97.2 0.00036 7.8E-09 77.2 5.1 37 66-103 78-114 (668)
258 COG3075 GlpB Anaerobic glycero 97.1 0.0004 8.7E-09 68.9 4.1 58 272-333 264-321 (421)
259 PRK04965 NADH:flavorubredoxin 97.1 0.0018 3.9E-08 67.5 9.2 34 70-103 3-37 (377)
260 PRK09754 phenylpropionate diox 97.1 0.0019 4.1E-08 67.8 9.5 33 70-103 4-38 (396)
261 TIGR03315 Se_ygfK putative sel 97.1 0.0007 1.5E-08 78.1 6.5 37 68-105 536-572 (1012)
262 PRK12416 protoporphyrinogen ox 97.1 0.00039 8.5E-09 74.5 4.2 37 71-107 3-44 (463)
263 TIGR01350 lipoamide_DH dihydro 97.1 0.0051 1.1E-07 65.9 12.0 33 70-103 171-203 (461)
264 TIGR00137 gid_trmFO tRNA:m(5)U 97.0 0.00054 1.2E-08 72.0 4.2 34 70-104 1-34 (433)
265 TIGR03169 Nterm_to_SelD pyridi 97.0 0.01 2.2E-07 61.4 13.5 35 71-105 1-37 (364)
266 PRK06912 acoL dihydrolipoamide 97.0 0.0072 1.6E-07 64.7 12.8 32 71-103 172-203 (458)
267 PRK12831 putative oxidoreducta 97.0 0.00078 1.7E-08 72.3 5.2 38 67-105 138-175 (464)
268 TIGR02053 MerA mercuric reduct 97.0 0.0057 1.2E-07 65.6 11.7 33 70-103 167-199 (463)
269 TIGR01316 gltA glutamate synth 97.0 0.0013 2.8E-08 70.3 6.4 38 67-105 131-168 (449)
270 PRK06416 dihydrolipoamide dehy 97.0 0.0089 1.9E-07 64.1 12.8 32 71-103 174-205 (462)
271 KOG2614|consensus 96.9 0.00083 1.8E-08 68.8 4.4 34 69-103 2-35 (420)
272 PRK07818 dihydrolipoamide dehy 96.9 0.0083 1.8E-07 64.4 12.4 32 71-103 174-205 (466)
273 PRK09564 coenzyme A disulfide 96.9 0.0079 1.7E-07 64.0 11.8 57 275-339 200-256 (444)
274 PRK05976 dihydrolipoamide dehy 96.9 0.011 2.4E-07 63.6 13.0 33 70-103 181-213 (472)
275 COG1232 HemY Protoporphyrinoge 96.9 0.00083 1.8E-08 70.8 4.1 35 71-106 2-38 (444)
276 PRK15317 alkyl hydroperoxide r 96.9 0.012 2.5E-07 64.2 13.2 57 278-337 399-457 (517)
277 PRK12810 gltD glutamate syntha 96.9 0.0017 3.6E-08 69.9 6.3 38 67-105 141-178 (471)
278 COG3634 AhpF Alkyl hydroperoxi 96.9 0.002 4.4E-08 64.4 6.2 30 67-97 209-238 (520)
279 PRK06370 mercuric reductase; V 96.8 0.01 2.2E-07 63.6 12.2 33 70-103 172-204 (463)
280 PRK14989 nitrite reductase sub 96.8 0.0082 1.8E-07 69.0 11.9 60 275-339 196-255 (847)
281 TIGR01316 gltA glutamate synth 96.8 0.013 2.9E-07 62.5 12.8 31 71-102 274-304 (449)
282 TIGR03140 AhpF alkyl hydropero 96.8 0.015 3.3E-07 63.3 13.3 56 278-336 400-457 (515)
283 TIGR03385 CoA_CoA_reduc CoA-di 96.8 0.011 2.3E-07 62.7 12.0 33 70-103 138-170 (427)
284 PLN02529 lysine-specific histo 96.8 0.0013 2.7E-08 73.9 4.9 39 67-106 158-196 (738)
285 PRK07251 pyridine nucleotide-d 96.8 0.0093 2E-07 63.5 11.4 32 71-103 159-190 (438)
286 TIGR02374 nitri_red_nirB nitri 96.8 0.0088 1.9E-07 68.4 11.8 57 276-339 192-248 (785)
287 PLN02328 lysine-specific histo 96.7 0.0017 3.6E-08 73.4 5.2 39 67-106 236-274 (808)
288 PRK12779 putative bifunctional 96.7 0.0013 2.9E-08 76.1 4.5 38 68-106 305-342 (944)
289 PRK09853 putative selenate red 96.7 0.0024 5.3E-08 73.5 6.3 38 67-105 537-574 (1019)
290 PRK10262 thioredoxin reductase 96.7 0.028 6.2E-07 57.0 13.2 56 276-334 195-253 (321)
291 COG1148 HdrA Heterodisulfide r 96.7 0.0018 3.8E-08 67.5 4.2 37 69-106 124-160 (622)
292 PRK06115 dihydrolipoamide dehy 96.6 0.016 3.4E-07 62.3 11.7 33 70-103 175-207 (466)
293 PRK12778 putative bifunctional 96.6 0.0031 6.7E-08 71.9 6.5 38 67-105 429-466 (752)
294 PRK11749 dihydropyrimidine deh 96.6 0.0022 4.8E-08 68.7 5.1 38 67-105 138-175 (457)
295 KOG4716|consensus 96.6 0.0016 3.5E-08 64.8 3.5 35 67-102 17-51 (503)
296 PLN02852 ferredoxin-NADP+ redu 96.6 0.0029 6.2E-08 68.0 5.6 39 68-106 25-64 (491)
297 PF00996 GDI: GDP dissociation 96.6 0.0023 4.9E-08 67.5 4.7 40 66-106 1-40 (438)
298 PRK05249 soluble pyridine nucl 96.6 0.014 3.1E-07 62.4 10.9 33 70-103 176-208 (461)
299 PRK08255 salicylyl-CoA 5-hydro 96.6 0.0019 4E-08 73.7 4.1 34 71-104 2-36 (765)
300 TIGR01421 gluta_reduc_1 glutat 96.5 0.015 3.2E-07 62.2 10.5 32 71-103 168-199 (450)
301 KOG0685|consensus 96.5 0.0031 6.8E-08 65.7 4.7 40 67-106 19-58 (498)
302 TIGR01318 gltD_gamma_fam gluta 96.5 0.0047 1E-07 66.4 6.3 37 68-105 140-176 (467)
303 TIGR01292 TRX_reduct thioredox 96.5 0.045 9.7E-07 54.5 13.1 55 279-337 190-246 (300)
304 PRK12831 putative oxidoreducta 96.5 0.032 6.8E-07 59.9 12.6 32 70-102 282-313 (464)
305 TIGR02374 nitri_red_nirB nitri 96.5 0.0069 1.5E-07 69.2 7.9 33 72-104 1-35 (785)
306 PRK14989 nitrite reductase sub 96.5 0.0074 1.6E-07 69.3 8.1 34 71-104 5-41 (847)
307 PRK06327 dihydrolipoamide dehy 96.4 0.02 4.4E-07 61.6 11.1 32 71-103 185-216 (475)
308 PRK06567 putative bifunctional 96.4 0.0037 8E-08 71.4 5.4 35 68-103 382-416 (1028)
309 PRK13512 coenzyme A disulfide 96.4 0.027 5.8E-07 60.0 11.5 32 71-103 150-181 (438)
310 PRK08010 pyridine nucleotide-d 96.4 0.025 5.4E-07 60.3 11.2 32 71-103 160-191 (441)
311 PRK14727 putative mercuric red 96.4 0.024 5.3E-07 61.1 11.2 31 71-102 190-220 (479)
312 TIGR01317 GOGAT_sm_gam glutama 96.4 0.0057 1.2E-07 66.0 6.1 37 68-105 142-178 (485)
313 PRK07845 flavoprotein disulfid 96.3 0.031 6.7E-07 60.0 11.7 32 71-103 179-210 (466)
314 COG1249 Lpd Pyruvate/2-oxoglut 96.3 0.033 7.2E-07 59.3 11.6 33 71-104 175-207 (454)
315 PRK12814 putative NADPH-depend 96.3 0.004 8.8E-08 69.6 4.7 37 68-105 192-228 (652)
316 PLN02507 glutathione reductase 96.3 0.034 7.3E-07 60.3 11.6 32 71-103 205-236 (499)
317 PRK12770 putative glutamate sy 96.3 0.0051 1.1E-07 63.5 4.9 37 69-106 18-54 (352)
318 TIGR01424 gluta_reduc_2 glutat 96.2 0.027 5.8E-07 60.2 10.4 32 71-103 168-199 (446)
319 PRK14694 putative mercuric red 96.2 0.034 7.3E-07 59.8 11.2 31 71-102 180-210 (468)
320 PRK12809 putative oxidoreducta 96.2 0.0076 1.6E-07 67.3 6.3 37 68-105 309-345 (639)
321 PTZ00188 adrenodoxin reductase 96.2 0.005 1.1E-07 65.6 4.4 38 69-106 39-76 (506)
322 PRK07846 mycothione reductase; 96.2 0.04 8.7E-07 58.9 11.3 33 70-103 167-199 (451)
323 TIGR01438 TGR thioredoxin and 96.2 0.031 6.8E-07 60.3 10.5 31 71-102 182-212 (484)
324 PRK06116 glutathione reductase 96.2 0.045 9.6E-07 58.5 11.6 33 70-103 168-200 (450)
325 PLN03000 amine oxidase 96.1 0.0055 1.2E-07 69.5 4.8 38 68-106 183-220 (881)
326 PRK06467 dihydrolipoamide dehy 96.1 0.039 8.5E-07 59.3 11.1 32 71-103 176-207 (471)
327 KOG1276|consensus 96.1 0.0066 1.4E-07 62.5 4.7 41 67-107 9-50 (491)
328 PTZ00058 glutathione reductase 96.0 0.044 9.4E-07 60.2 11.0 33 70-103 238-270 (561)
329 PLN02976 amine oxidase 96.0 0.0071 1.5E-07 71.3 4.7 38 68-106 692-729 (1713)
330 COG0446 HcaD Uncharacterized N 96.0 0.072 1.6E-06 55.5 12.0 34 70-104 137-170 (415)
331 KOG3855|consensus 96.0 0.0068 1.5E-07 62.1 3.9 38 67-104 34-74 (481)
332 PRK13748 putative mercuric red 95.9 0.047 1E-06 60.1 10.8 31 71-102 272-302 (561)
333 COG4529 Uncharacterized protei 95.8 0.049 1.1E-06 57.3 9.5 36 70-105 2-39 (474)
334 TIGR01423 trypano_reduc trypan 95.7 0.067 1.5E-06 57.8 10.7 49 276-330 241-289 (486)
335 PRK11749 dihydropyrimidine deh 95.7 0.1 2.2E-06 55.9 12.0 32 70-102 274-306 (457)
336 PRK12770 putative glutamate sy 95.7 0.085 1.8E-06 54.4 11.1 31 71-102 174-205 (352)
337 TIGR03452 mycothione_red mycot 95.6 0.1 2.2E-06 55.9 11.3 33 70-103 170-202 (452)
338 PRK12771 putative glutamate sy 95.6 0.012 2.7E-07 64.7 4.4 38 67-105 135-172 (564)
339 PTZ00153 lipoamide dehydrogena 95.5 0.13 2.9E-06 57.4 12.3 32 71-103 314-345 (659)
340 PRK13984 putative oxidoreducta 95.4 0.016 3.6E-07 64.3 4.8 38 67-105 281-318 (604)
341 PRK06292 dihydrolipoamide dehy 95.4 0.15 3.3E-06 54.6 12.1 32 71-103 171-202 (460)
342 TIGR03143 AhpF_homolog putativ 95.4 0.19 4.1E-06 55.3 12.8 33 70-103 144-176 (555)
343 PRK12810 gltD glutamate syntha 95.3 0.15 3.3E-06 54.8 11.8 60 277-339 340-411 (471)
344 PTZ00318 NADH dehydrogenase-li 95.3 0.14 3E-06 54.3 11.1 52 276-339 238-289 (424)
345 TIGR01318 gltD_gamma_fam gluta 95.2 0.17 3.6E-06 54.5 11.6 33 70-103 283-316 (467)
346 PTZ00052 thioredoxin reductase 95.2 0.13 2.8E-06 55.8 10.8 31 71-102 184-214 (499)
347 TIGR01372 soxA sarcosine oxida 95.2 0.23 5E-06 58.4 13.4 60 277-340 362-422 (985)
348 PTZ00318 NADH dehydrogenase-li 95.2 0.026 5.7E-07 59.8 5.2 37 68-105 9-45 (424)
349 PLN02546 glutathione reductase 95.1 0.18 3.8E-06 55.4 11.7 32 71-103 254-285 (558)
350 KOG1800|consensus 95.1 0.027 5.9E-07 57.2 4.6 39 69-107 20-59 (468)
351 PRK12779 putative bifunctional 94.9 0.28 6.1E-06 57.2 13.1 32 70-102 448-479 (944)
352 PRK12778 putative bifunctional 94.9 0.2 4.3E-06 57.3 11.5 32 70-102 571-603 (752)
353 COG0493 GltD NADPH-dependent g 94.8 0.042 9.1E-07 58.6 5.4 37 69-106 123-159 (457)
354 KOG1336|consensus 94.4 0.25 5.4E-06 51.9 9.7 56 276-336 265-320 (478)
355 PF13434 K_oxygenase: L-lysine 94.3 0.21 4.6E-06 51.4 9.1 38 67-104 188-226 (341)
356 COG3486 IucD Lysine/ornithine 94.3 0.34 7.5E-06 50.0 10.3 39 66-104 2-40 (436)
357 KOG4405|consensus 94.1 0.055 1.2E-06 55.5 4.2 41 65-106 4-44 (547)
358 KOG2755|consensus 93.9 0.038 8.2E-07 53.5 2.5 35 71-105 1-36 (334)
359 COG1206 Gid NAD(FAD)-utilizing 93.7 0.048 1E-06 54.5 2.9 33 71-104 5-37 (439)
360 KOG3851|consensus 93.4 0.07 1.5E-06 53.1 3.4 39 66-104 36-75 (446)
361 PF02558 ApbA: Ketopantoate re 93.4 0.088 1.9E-06 47.0 3.8 31 72-103 1-31 (151)
362 KOG1439|consensus 93.3 0.055 1.2E-06 55.5 2.6 40 66-106 1-40 (440)
363 PRK12814 putative NADPH-depend 93.1 0.64 1.4E-05 52.2 11.0 33 70-103 324-357 (652)
364 KOG0399|consensus 92.7 0.14 3E-06 58.6 4.9 38 68-106 1784-1821(2142)
365 PRK12809 putative oxidoreducta 92.6 0.96 2.1E-05 50.7 11.5 49 277-327 500-565 (639)
366 COG5044 MRS6 RAB proteins gera 92.2 0.19 4.2E-06 51.0 4.8 37 69-106 6-42 (434)
367 PF01210 NAD_Gly3P_dh_N: NAD-d 92.0 0.18 4E-06 45.6 4.0 31 72-103 2-32 (157)
368 COG0569 TrkA K+ transport syst 91.3 0.22 4.7E-06 48.1 3.9 33 71-104 2-34 (225)
369 PF02737 3HCDH_N: 3-hydroxyacy 91.2 0.23 5E-06 46.1 3.9 32 72-104 2-33 (180)
370 KOG2403|consensus 90.7 0.59 1.3E-05 50.0 6.6 37 65-102 51-87 (642)
371 COG3634 AhpF Alkyl hydroperoxi 90.6 2.9 6.3E-05 42.5 11.0 58 277-337 401-460 (520)
372 PRK05708 2-dehydropantoate 2-r 90.1 0.3 6.4E-06 49.4 3.9 32 71-103 4-35 (305)
373 PRK09853 putative selenate red 90.1 4.1 8.8E-05 47.7 13.3 33 71-103 670-703 (1019)
374 PRK13984 putative oxidoreducta 90.0 3.8 8.3E-05 45.5 12.9 54 279-335 475-544 (604)
375 PF03721 UDPG_MGDP_dh_N: UDP-g 89.8 0.36 7.8E-06 45.1 3.8 32 72-104 3-34 (185)
376 PF13738 Pyr_redox_3: Pyridine 89.5 0.45 9.8E-06 44.4 4.3 34 69-103 167-200 (203)
377 TIGR03315 Se_ygfK putative sel 89.2 4.9 0.00011 47.2 13.2 34 70-103 667-701 (1012)
378 PF01593 Amino_oxidase: Flavin 88.9 0.36 7.9E-06 50.0 3.5 45 276-327 219-263 (450)
379 PRK06249 2-dehydropantoate 2-r 88.9 0.46 1E-05 48.1 4.2 33 70-103 6-38 (313)
380 PRK06129 3-hydroxyacyl-CoA deh 88.5 0.45 9.9E-06 48.1 3.8 33 71-104 4-36 (308)
381 COG0492 TrxB Thioredoxin reduc 88.2 7.6 0.00017 39.3 12.4 57 278-339 191-248 (305)
382 PRK01438 murD UDP-N-acetylmura 88.1 0.55 1.2E-05 50.6 4.4 32 71-103 18-49 (480)
383 PRK12921 2-dehydropantoate 2-r 88.0 0.52 1.1E-05 47.3 3.9 30 71-101 2-31 (305)
384 PRK06522 2-dehydropantoate 2-r 87.9 0.58 1.2E-05 46.9 4.1 30 72-102 3-32 (304)
385 PRK12771 putative glutamate sy 87.6 5.8 0.00013 43.7 12.1 55 278-335 317-386 (564)
386 PRK02705 murD UDP-N-acetylmura 87.3 0.68 1.5E-05 49.5 4.4 32 72-104 3-34 (459)
387 PRK08293 3-hydroxybutyryl-CoA 86.9 0.7 1.5E-05 46.2 4.0 33 71-104 5-37 (287)
388 KOG3923|consensus 86.5 0.95 2.1E-05 44.9 4.5 36 69-104 3-44 (342)
389 COG1252 Ndh NADH dehydrogenase 86.4 0.49 1.1E-05 49.5 2.7 38 69-106 155-204 (405)
390 PF13241 NAD_binding_7: Putati 86.4 0.73 1.6E-05 38.5 3.3 33 69-102 7-39 (103)
391 PRK07819 3-hydroxybutyryl-CoA 86.3 0.75 1.6E-05 46.1 3.9 33 71-104 7-39 (286)
392 PRK07066 3-hydroxybutyryl-CoA 86.3 0.79 1.7E-05 46.7 4.1 33 71-104 9-41 (321)
393 PRK06718 precorrin-2 dehydroge 86.3 0.93 2E-05 42.9 4.3 33 69-102 10-42 (202)
394 PRK09260 3-hydroxybutyryl-CoA 86.2 0.71 1.5E-05 46.1 3.7 32 72-104 4-35 (288)
395 PF02254 TrkA_N: TrkA-N domain 86.0 1 2.2E-05 38.0 4.1 32 72-104 1-32 (116)
396 KOG1346|consensus 86.0 4.4 9.5E-05 42.2 9.0 50 276-336 267-316 (659)
397 PRK06719 precorrin-2 dehydroge 85.9 1 2.2E-05 40.8 4.2 31 69-100 13-43 (157)
398 PRK14106 murD UDP-N-acetylmura 85.3 0.98 2.1E-05 48.1 4.4 33 70-103 6-38 (450)
399 PRK08229 2-dehydropantoate 2-r 84.8 0.98 2.1E-05 46.2 4.0 32 71-103 4-35 (341)
400 TIGR02354 thiF_fam2 thiamine b 84.3 1.3 2.8E-05 41.9 4.2 35 68-103 20-55 (200)
401 TIGR01470 cysG_Nterm siroheme 84.0 1.4 3E-05 41.9 4.3 32 70-102 10-41 (205)
402 PRK07530 3-hydroxybutyryl-CoA 84.0 1.2 2.6E-05 44.6 4.1 32 71-103 6-37 (292)
403 PRK06035 3-hydroxyacyl-CoA deh 83.3 1.3 2.9E-05 44.2 4.2 33 71-104 5-37 (291)
404 PRK04148 hypothetical protein; 83.2 1 2.2E-05 39.6 2.8 33 70-104 18-50 (134)
405 PRK14620 NAD(P)H-dependent gly 83.1 1.3 2.9E-05 45.0 4.1 32 71-103 2-33 (326)
406 PRK12475 thiamine/molybdopteri 82.7 1.5 3.2E-05 45.0 4.2 36 68-104 23-59 (338)
407 PRK15116 sulfur acceptor prote 82.2 1.7 3.7E-05 43.0 4.3 35 68-103 29-64 (268)
408 PRK14618 NAD(P)H-dependent gly 82.2 1.8 3.8E-05 44.2 4.6 32 71-103 6-37 (328)
409 COG1251 NirB NAD(P)H-nitrite r 82.2 3.3 7.2E-05 46.1 6.8 62 271-339 192-253 (793)
410 PRK05808 3-hydroxybutyryl-CoA 81.9 1.4 3E-05 43.9 3.6 33 71-104 5-37 (282)
411 cd01483 E1_enzyme_family Super 81.7 2 4.2E-05 38.0 4.2 32 72-104 2-34 (143)
412 PF01488 Shikimate_DH: Shikima 81.3 1.8 4E-05 38.0 3.8 35 68-103 11-46 (135)
413 COG1004 Ugd Predicted UDP-gluc 81.2 1.6 3.6E-05 45.1 3.8 32 71-103 2-33 (414)
414 PRK07688 thiamine/molybdopteri 81.0 2 4.3E-05 44.2 4.4 35 68-103 23-58 (339)
415 PF00899 ThiF: ThiF family; I 81.0 1.8 3.9E-05 37.9 3.6 34 70-104 3-37 (135)
416 PRK00094 gpsA NAD(P)H-dependen 80.9 1.7 3.7E-05 44.0 3.9 32 71-103 3-34 (325)
417 COG1748 LYS9 Saccharopine dehy 80.6 1.9 4.1E-05 44.9 4.1 34 71-104 3-36 (389)
418 TIGR00518 alaDH alanine dehydr 80.1 2 4.3E-05 44.8 4.1 34 69-103 167-200 (370)
419 COG1893 ApbA Ketopantoate redu 80.0 1.8 3.9E-05 43.8 3.7 32 72-104 3-34 (307)
420 PLN02545 3-hydroxybutyryl-CoA 79.9 2 4.3E-05 43.1 4.0 32 72-104 7-38 (295)
421 TIGR03026 NDP-sugDHase nucleot 79.8 1.9 4.1E-05 45.6 3.9 33 71-104 2-34 (411)
422 cd01075 NAD_bind_Leu_Phe_Val_D 79.8 2.4 5.2E-05 40.0 4.3 33 70-103 29-61 (200)
423 cd01080 NAD_bind_m-THF_DH_Cycl 79.4 2.7 5.9E-05 38.5 4.4 35 68-103 43-78 (168)
424 PRK06130 3-hydroxybutyryl-CoA 79.4 2.5 5.3E-05 42.7 4.5 32 71-103 6-37 (311)
425 TIGR01763 MalateDH_bact malate 79.2 2.3 4.9E-05 43.1 4.1 31 71-102 3-34 (305)
426 cd01487 E1_ThiF_like E1_ThiF_l 78.8 2.5 5.4E-05 39.0 3.9 31 72-103 2-33 (174)
427 PRK11064 wecC UDP-N-acetyl-D-m 78.6 2.2 4.7E-05 45.2 3.9 33 71-104 5-37 (415)
428 KOG2495|consensus 78.3 1.1 2.4E-05 46.6 1.6 40 65-104 214-266 (491)
429 cd05292 LDH_2 A subgroup of L- 78.0 2.7 5.9E-05 42.5 4.3 33 71-104 2-36 (308)
430 PF01262 AlaDh_PNT_C: Alanine 77.8 2.9 6.3E-05 38.2 4.1 34 69-103 20-53 (168)
431 PRK02472 murD UDP-N-acetylmura 76.9 2.7 6E-05 44.7 4.2 32 71-103 7-38 (447)
432 TIGR02279 PaaC-3OHAcCoADH 3-hy 76.9 2.7 5.9E-05 45.6 4.1 33 71-104 7-39 (503)
433 cd05311 NAD_bind_2_malic_enz N 76.6 2.7 5.8E-05 40.6 3.6 33 70-103 26-61 (226)
434 COG0686 Ald Alanine dehydrogen 76.5 2.5 5.4E-05 42.3 3.3 36 68-104 167-202 (371)
435 TIGR02356 adenyl_thiF thiazole 76.4 3.7 8.1E-05 38.8 4.5 36 67-103 19-55 (202)
436 cd00401 AdoHcyase S-adenosyl-L 76.3 3.1 6.7E-05 43.9 4.2 35 69-104 202-236 (413)
437 TIGR02355 moeB molybdopterin s 76.2 3.6 7.7E-05 40.1 4.4 36 68-104 23-59 (240)
438 PRK12549 shikimate 5-dehydroge 76.1 3.3 7.2E-05 41.4 4.3 33 70-103 128-161 (284)
439 TIGR01915 npdG NADPH-dependent 75.4 3.6 7.7E-05 39.3 4.1 31 72-103 3-34 (219)
440 COG2072 TrkA Predicted flavopr 75.3 3.1 6.8E-05 44.4 4.1 34 70-104 176-209 (443)
441 PRK14619 NAD(P)H-dependent gly 75.2 3.8 8.3E-05 41.3 4.5 32 71-103 6-37 (308)
442 cd05291 HicDH_like L-2-hydroxy 75.2 3.8 8.1E-05 41.4 4.4 32 72-104 3-36 (306)
443 PLN02353 probable UDP-glucose 75.2 3.2 7E-05 44.6 4.1 34 71-104 3-37 (473)
444 PRK11730 fadB multifunctional 75.1 3.1 6.7E-05 47.3 4.1 33 71-104 315-347 (715)
445 PRK07531 bifunctional 3-hydrox 75.0 3.1 6.8E-05 45.1 4.0 33 71-104 6-38 (495)
446 PRK08328 hypothetical protein; 74.9 3.8 8.3E-05 39.6 4.2 35 68-103 26-61 (231)
447 TIGR03736 PRTRC_ThiF PRTRC sys 74.6 3.9 8.5E-05 39.9 4.2 36 67-103 9-55 (244)
448 PRK05690 molybdopterin biosynt 74.3 4 8.6E-05 39.9 4.2 36 67-103 30-66 (245)
449 PRK08268 3-hydroxy-acyl-CoA de 74.3 3.6 7.7E-05 44.7 4.2 33 72-105 10-42 (507)
450 TIGR02437 FadB fatty oxidation 74.3 3.3 7.2E-05 47.0 4.1 33 71-104 315-347 (714)
451 PRK12548 shikimate 5-dehydroge 74.3 3.4 7.5E-05 41.4 3.8 33 70-103 127-160 (289)
452 PTZ00082 L-lactate dehydrogena 73.4 5.2 0.00011 40.8 4.9 36 68-104 5-41 (321)
453 cd01339 LDH-like_MDH L-lactate 73.4 3.9 8.4E-05 41.2 4.0 32 72-104 1-33 (300)
454 PLN02172 flavin-containing mon 73.3 3.2 7E-05 44.5 3.6 33 70-103 205-237 (461)
455 cd05191 NAD_bind_amino_acid_DH 73.1 5.8 0.00013 31.7 4.2 33 69-101 23-55 (86)
456 cd00757 ThiF_MoeB_HesA_family 72.9 4.5 9.7E-05 39.0 4.1 35 68-103 20-55 (228)
457 PRK07417 arogenate dehydrogena 72.3 4 8.7E-05 40.6 3.8 32 71-103 2-33 (279)
458 COG1250 FadB 3-hydroxyacyl-CoA 71.8 4.1 9E-05 41.1 3.7 33 71-104 5-37 (307)
459 cd01485 E1-1_like Ubiquitin ac 71.7 4.9 0.00011 37.9 4.0 35 68-103 18-53 (198)
460 PRK06223 malate dehydrogenase; 71.7 4.8 0.0001 40.6 4.2 32 71-103 4-36 (307)
461 PRK05562 precorrin-2 dehydroge 71.6 5.2 0.00011 38.4 4.2 31 69-100 25-55 (223)
462 PF03807 F420_oxidored: NADP o 71.5 5.2 0.00011 32.4 3.7 32 72-104 2-37 (96)
463 cd01486 Apg7 Apg7 is an E1-lik 71.2 5.3 0.00011 40.1 4.3 32 72-104 2-34 (307)
464 TIGR02441 fa_ox_alpha_mit fatt 71.1 4.3 9.3E-05 46.2 4.1 33 71-104 337-369 (737)
465 PRK08644 thiamine biosynthesis 71.1 5.3 0.00012 38.1 4.1 35 68-103 27-62 (212)
466 cd01484 E1-2_like Ubiquitin ac 70.9 5 0.00011 38.9 3.9 31 72-103 2-33 (234)
467 PRK09496 trkA potassium transp 70.8 4.5 9.9E-05 43.0 4.0 33 71-104 2-34 (453)
468 TIGR02853 spore_dpaA dipicolin 70.7 5 0.00011 40.2 4.0 34 69-103 151-184 (287)
469 PRK08223 hypothetical protein; 70.5 5.1 0.00011 40.1 3.9 37 67-104 25-62 (287)
470 cd01078 NAD_bind_H4MPT_DH NADP 70.5 6.1 0.00013 36.8 4.4 34 69-103 28-62 (194)
471 TIGR00507 aroE shikimate 5-deh 70.5 5.3 0.00012 39.5 4.2 33 70-103 118-150 (270)
472 PLN02520 bifunctional 3-dehydr 69.9 5.2 0.00011 43.7 4.3 32 70-102 380-411 (529)
473 cd01492 Aos1_SUMO Ubiquitin ac 69.6 5.8 0.00013 37.3 4.0 35 68-103 20-55 (197)
474 PRK08017 oxidoreductase; Provi 69.6 5.9 0.00013 38.1 4.2 31 72-103 5-36 (256)
475 cd01488 Uba3_RUB Ubiquitin act 69.5 5.8 0.00013 39.8 4.1 31 72-103 2-33 (291)
476 PRK10669 putative cation:proto 69.4 4.1 8.9E-05 44.8 3.4 35 69-104 417-451 (558)
477 cd01490 Ube1_repeat2 Ubiquitin 69.4 5.4 0.00012 42.3 4.1 32 72-104 2-39 (435)
478 TIGR01381 E1_like_apg7 E1-like 69.2 5.5 0.00012 44.1 4.2 35 69-104 338-373 (664)
479 PRK09424 pntA NAD(P) transhydr 69.1 5.1 0.00011 43.4 3.9 35 69-104 165-199 (509)
480 cd00755 YgdL_like Family of ac 69.1 6.1 0.00013 38.3 4.1 35 68-103 10-45 (231)
481 TIGR01505 tartro_sem_red 2-hyd 69.0 5 0.00011 40.0 3.7 31 72-103 2-32 (291)
482 TIGR00936 ahcY adenosylhomocys 68.5 6.3 0.00014 41.5 4.3 34 69-103 195-228 (406)
483 PF03446 NAD_binding_2: NAD bi 68.1 6.7 0.00015 35.5 4.0 32 71-103 3-34 (163)
484 TIGR03467 HpnE squalene-associ 67.3 6.9 0.00015 40.7 4.5 50 272-327 203-252 (419)
485 PRK11154 fadJ multifunctional 67.3 5.7 0.00012 45.1 4.0 33 71-104 311-344 (708)
486 PRK04308 murD UDP-N-acetylmura 67.0 7.1 0.00015 41.6 4.5 33 71-104 7-39 (445)
487 TIGR03385 CoA_CoA_reduc CoA-di 67.0 6.7 0.00014 41.4 4.3 54 277-338 55-110 (427)
488 PRK08306 dipicolinate synthase 66.6 7 0.00015 39.3 4.1 34 69-103 152-185 (296)
489 cd01489 Uba2_SUMO Ubiquitin ac 66.6 6.4 0.00014 39.9 3.8 32 72-104 2-34 (312)
490 PRK05476 S-adenosyl-L-homocyst 66.1 7.7 0.00017 41.1 4.4 35 69-104 212-246 (425)
491 PRK00258 aroE shikimate 5-dehy 65.9 7.3 0.00016 38.7 4.1 34 70-104 124-158 (278)
492 PRK15057 UDP-glucose 6-dehydro 65.8 6.5 0.00014 41.2 3.9 31 72-104 3-33 (388)
493 PF13478 XdhC_C: XdhC Rossmann 65.7 6.6 0.00014 34.7 3.3 32 72-104 1-32 (136)
494 PRK08762 molybdopterin biosynt 65.7 7.4 0.00016 40.6 4.2 35 68-103 134-169 (376)
495 COG3075 GlpB Anaerobic glycero 65.5 7.3 0.00016 39.5 3.8 36 69-105 2-37 (421)
496 PRK07326 short chain dehydroge 65.4 7.8 0.00017 36.8 4.1 32 71-103 8-40 (237)
497 PRK15461 NADH-dependent gamma- 65.4 7.2 0.00016 39.1 4.0 33 71-104 3-35 (296)
498 KOG2304|consensus 65.3 6.3 0.00014 37.7 3.2 40 65-105 7-46 (298)
499 PRK09496 trkA potassium transp 65.1 7.1 0.00015 41.5 4.1 34 70-104 232-265 (453)
500 TIGR02440 FadJ fatty oxidation 65.1 6.9 0.00015 44.3 4.1 34 71-104 306-339 (699)
No 1
>KOG1238|consensus
Probab=100.00 E-value=3.4e-69 Score=564.57 Aligned_cols=399 Identities=41% Similarity=0.678 Sum_probs=351.7
Q ss_pred cccCCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCCcccccccccccccCCCCcCCCccccccccccccCCCC
Q psy760 64 QDLLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLVDIPVLNTNLILSPLNWGYKTEKEDCRACLGLKGQ 143 (511)
Q Consensus 64 ~~~~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~~~~~ip~~~~~~~~~~~~w~~~t~p~~~~~~~~~~~~ 143 (511)
.+...+|||||||||.|||++|.+|+|++.++|||||||+.+....++|.....++.+.+||.|.++|++ ++|..+.++
T Consensus 52 ~~~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~~~~~~~p~~~~~~q~s~~dw~y~t~Ps~-~ac~~m~~~ 130 (623)
T KOG1238|consen 52 SELDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDPPLYSDPPLLAANLQLSLYDWSYHTEPSQ-HACLAMSED 130 (623)
T ss_pred cccccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCCcccccchHHHHHhccccccccCcCccCh-hhhhhhcCC
Confidence 4567789999999999999999999999999999999999988888999777888899999999999999 999999999
Q ss_pred ccccCCcceecccccccccccccCCcccchHHhhcCCCCCChhchHHHHHHHHhhhcccccCCCCCCCCcccccccCCCC
Q psy760 144 RCPWPSGKGVGGTSLINTMLYTRGNKRNYDDWAKLGNYGWSYNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTEYN 223 (511)
Q Consensus 144 ~~~~~rGk~lGGsS~~n~~~~~r~~~~d~~~w~~~g~~~w~~~~l~~y~~k~e~~~~~~~~~~~~~g~~G~l~v~~~~~~ 223 (511)
.|.|||||+|||+|.+|+|+|.|+++.|||+|++.|+++|+|++++|||+|+|....+.....++|+..|++.++...+.
T Consensus 131 ~c~wpRGrVLGGsS~iN~m~Y~RG~r~Dyd~W~~~gnpgW~y~~vl~yf~k~E~~~~~~~~~~~y~~~~g~~~ve~~~~~ 210 (623)
T KOG1238|consen 131 RCYWPRGRVLGGSSVLNAMFYVRGNRRDYDRWAAEGNPGWSYDEVLPYFKKSEDKVVPDPELTPYHGAGGPLLVEAGVYP 210 (623)
T ss_pred ceecCccceecccccccceEEecCCccchHHHHHhcCCCCCHHHHHHHHHHHhhccCCCcccCcccccCCcceecccccc
Confidence 99999999999999999999999999999999999999999999999999999998877666669999999999999999
Q ss_pred ChHHHHHHHHHHHcCCCCCCCCCCCccceeecccccCCCcccchhHHhhHhhhh-CCCcEEEeCceEEEEEEcCCCCcEE
Q psy760 224 TPMLDAFLQAGMEAGYPLVDYNGKTQTGFARAQATLHKRSRRSSAKDYIDPIKK-RCNLTVKDSSFVKKILIDPVTKKAC 302 (511)
Q Consensus 224 ~~~~~~~~~a~~~~G~~~~~~~~~~~~G~~~~~~~~~~g~r~~~~~~~L~~~~~-r~gv~v~~~t~V~~I~~d~~~~ra~ 302 (511)
.+....+.++.+++|.+..|+|+..+.|+.+.+.+.++|.|+++..+|+.++.. |+|+++..++.|++|.+|..+.++.
T Consensus 211 ~~~~~~~~~ag~e~G~~~~D~nG~~~tg~~~l~~t~~~g~R~s~~~a~l~~~~~~R~NL~~~~~~~vtrvl~D~~~~~a~ 290 (623)
T KOG1238|consen 211 NNLFTAFHRAGTEIGGSIFDRNGERHTGASLLQYTIRNGIRVSLAKAYLKPIRLTRPNLHISRNAAVTRVLIDPAGKRAK 290 (623)
T ss_pred CchhhHhHHhHHhcCCCccCCCCccccchhhhhccccCCEEEEehhhhhhhhhccCccccccccceEEEEEEcCCCceEE
Confidence 999999999999999888999999999999999999999999999999999876 8899999999999999998778999
Q ss_pred EEEEEEC-CeEEEEEeCcEEEEccCCCCcHHHHHhcCCCCccccccCCCCccccCc-cchhhhhcccCceEEEEEcCCCC
Q psy760 303 GVLATIK-GIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIPVIKNLR-VGENLQEHLAMAGLTFLVNQPIG 380 (511)
Q Consensus 303 GV~~~~~-g~~~~v~A~k~VILAAGa~~SP~LL~~SGIGp~~~L~~~gi~vv~~~P-VG~nl~DH~~~~~~~~~~~~~~~ 380 (511)
||++.++ +++++++|+||||||||+++||||||+|||||++||+++|||++.|+| ||+|||||+..+ +...+.++.+
T Consensus 291 gv~~~~~~~~~~~v~a~kEVILSAGAi~SPQLLMLSGIGP~~~L~~~gIpvv~dLP~VG~nLqDH~~~~-~~~~~~~~~~ 369 (623)
T KOG1238|consen 291 GVEFVRDGGKEHTVKARKEVILSAGAINSPQLLMLSGIGPADHLKKLGIPVVLDLPGVGQNLQDHPMNP-GFVFSTNPVE 369 (623)
T ss_pred EEEEEecCceeeeecccceEEEeccccCCHHHHHHcCCCcHHHHHhcCCCeeccCcccccccccccccc-eeeecCCCcc
Confidence 9999988 799999999999999999999999999999999999999999999999 999999999984 4443444544
Q ss_pred cchhhhhcchHHHHHhHHhcCCCCcccCcccce--eeeehhccchhhhhccCCCeEEEEecC------------------
Q psy760 381 LLQDRLIKEMPVHFAGKLRHSLSPITNSETLST--NIKTIFAAHHDKINKSGEDITIRLIKD------------------ 440 (511)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~Gpl~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 440 (511)
.....+. ....+.+|+..++||+++.+ .+. +++...... ....+|+++.+...
T Consensus 370 ~~~~~~~--~~~~~~~yl~~~~G~~~~~~-~e~~~f~~t~~~~~----~~~~PD~~~~~~~~~~~~~~~~~~~~~~~~~y 442 (623)
T KOG1238|consen 370 LSLIRLV--GITTVGQYLEGGSGPLASPG-VETLGFINTVSSNL----SLDWPDIELHFVAGSLSSDGLTALRKALGEIY 442 (623)
T ss_pred ccccccc--cchHHHHHHHcCCCCcccCc-ceeeEEeccccccC----cCCCCCeeEEeccccccccchhhhhhhcchHH
Confidence 4443433 56789999999999999876 333 254443221 23356666555421
Q ss_pred ---------cceeEEEeccCCCCCCCceEEEecC--CCchhHH
Q psy760 441 ---------LIGILIALALPRKFSTWGKFQVSSS--FVVPVWF 472 (511)
Q Consensus 441 ---------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~~ 472 (511)
.....|...+.+|+|+ |++.+.|. ++-|.+-
T Consensus 443 ~~~~~~~~~~~~~~i~~~~l~P~Sr-G~l~L~s~nP~~~P~I~ 484 (623)
T KOG1238|consen 443 QALFGELTNSDSFVIFPKLLRPKSR-GRLKLRSTNPRDNPLIT 484 (623)
T ss_pred HHhhhhhhcCceeEEeehhcCCCcc-ceEEecCCCCCcCceec
Confidence 0015678889999999 99999998 8888764
No 2
>PRK02106 choline dehydrogenase; Validated
Probab=100.00 E-value=3.3e-53 Score=461.67 Aligned_cols=384 Identities=40% Similarity=0.615 Sum_probs=297.9
Q ss_pred CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCC---Cccccccccccc-ccCCCCcCCCccccccccccccCCC
Q psy760 67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF---NYLVDIPVLNTN-LILSPLNWGYKTEKEDCRACLGLKG 142 (511)
Q Consensus 67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~---~~~~~ip~~~~~-~~~~~~~w~~~t~p~~~~~~~~~~~ 142 (511)
..+|||||||||++|+++|.+|||++|.+|||||+|+.. ......|..... .....++|.|.+.|++ ...+
T Consensus 3 ~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~-----~~~~ 77 (560)
T PRK02106 3 TMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGPDYRWDFFIQMPAALAFPLQGKRYNWAYETEPEP-----HMNN 77 (560)
T ss_pred CCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCcccCCCcceeCcHHHHHhcCCCceeeceecccCC-----CCCC
Confidence 457999999999999999999999789999999999753 233445543222 2245678999998887 5667
Q ss_pred CccccCCcceecccccccccccccCCcccchHHhhc-CCCCCChhchHHHHHHHHhhhcccccCCCCCCCCcccccccC-
Q psy760 143 QRCPWPSGKGVGGTSLINTMLYTRGNKRNYDDWAKL-GNYGWSYNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYT- 220 (511)
Q Consensus 143 ~~~~~~rGk~lGGsS~~n~~~~~r~~~~d~~~w~~~-g~~~w~~~~l~~y~~k~e~~~~~~~~~~~~~g~~G~l~v~~~- 220 (511)
+.+.+++||++||+|.+|+|.|.|+.+.||+.|++. |+++|+|++++|||+++|++... +..+++..||+.+..+
T Consensus 78 ~~~~~~~g~~lGGsS~iN~~~~~R~~~~Dfd~w~~~~g~~~Ws~~~l~py~~k~E~~~~~---~~~~~g~~gp~~~~~~~ 154 (560)
T PRK02106 78 RRMECPRGKVLGGSSSINGMVYIRGNAMDYDNWAELPGLEGWSYADCLPYFKKAETRDGG---EDDYRGGDGPLSVTRGK 154 (560)
T ss_pred CeeecccccccCCCCCccceEEecCCHHHHHHHHhhcCCCCCCHHHHHHHHHHhhccCCC---CccccCCCCCEEEeCCC
Confidence 789999999999999999999999999999999988 88999999999999999988732 2346888899988765
Q ss_pred CCCChHHHHHHHHHHHcCCCC-CCCCCCCccceeecccccCCCcccchhHHhhHhhhhCCCcEEEeCceEEEEEEcCCCC
Q psy760 221 EYNTPMLDAFLQAGMEAGYPL-VDYNGKTQTGFARAQATLHKRSRRSSAKDYIDPIKKRCNLTVKDSSFVKKILIDPVTK 299 (511)
Q Consensus 221 ~~~~~~~~~~~~a~~~~G~~~-~~~~~~~~~G~~~~~~~~~~g~r~~~~~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ 299 (511)
....+..+.+.++++++|++. .+.++....|++.+..++..|.|.++..+||.++.++.|++|++++.|++|++++ +
T Consensus 155 ~~~~~~~~~~~~a~~~lG~~~~~~~~~~~~~g~~~~~~~~~~g~R~s~~~~~l~~a~~~~nl~i~~~a~V~rI~~~~--~ 232 (560)
T PRK02106 155 PGTNPLFQAFVEAGVQAGYPRTDDLNGYQQEGFGPMDRTVTNGRRWSAARAYLDPALKRPNLTIVTHALTDRILFEG--K 232 (560)
T ss_pred CCCCHHHHHHHHHHHHcCCCcCCCCCCCCCceeEEEeeecCCCEEEChHHHhhccccCCCCcEEEcCCEEEEEEEeC--C
Confidence 456778889999999999987 4677777778887777888899999999999987778999999999999999985 7
Q ss_pred cEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHHhcCCCCccccccCCCCccccCc-cchhhhhcccCceEEEEEcCC
Q psy760 300 KACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIPVIKNLR-VGENLQEHLAMAGLTFLVNQP 378 (511)
Q Consensus 300 ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~~SGIGp~~~L~~~gi~vv~~~P-VG~nl~DH~~~~~~~~~~~~~ 378 (511)
+|+||++...+...++.+.|+||||||+++||+|||+|||||+++|+++||+++.|+| ||+|||||+.. .+.+.++++
T Consensus 233 ~a~GV~~~~~~~~~~~~~ak~VILaaGai~TP~LLl~SGIG~~~~L~~~gI~~~~dlP~VG~NL~dH~~~-~~~~~~~~~ 311 (560)
T PRK02106 233 RAVGVEYERGGGRETARARREVILSAGAINSPQLLQLSGIGPAEHLKELGIPVVHDLPGVGENLQDHLEV-YIQYECKQP 311 (560)
T ss_pred eEEEEEEEeCCcEEEEEeeeeEEEccCCCCCHHHHhhcCCCChHHHHhcCCceEeeCCCCCcChhhCccc-eEEEEeCCC
Confidence 9999999876544455555799999999999999999999999999999999999999 99999999998 788888765
Q ss_pred CCcch--hhhhcchHHHHHhHHhcCCCCcccCcccceeeeehhccchhhhhccCCCeEEEEecC-----------cceeE
Q psy760 379 IGLLQ--DRLIKEMPVHFAGKLRHSLSPITNSETLSTNIKTIFAAHHDKINKSGEDITIRLIKD-----------LIGIL 445 (511)
Q Consensus 379 ~~~~~--~~~~~~~~~~~~~~~~~~~Gpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~ 445 (511)
..... .... ......+|+..++|+++.......+....... ...+++++.+.+. ..+..
T Consensus 312 ~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~------~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (560)
T PRK02106 312 VSLYPALKWWN--KPKIGAEWLFTGTGLGASNHFEAGGFIRSRAG------VDWPNIQYHFLPVAIRYDGSNAVKGHGFQ 383 (560)
T ss_pred cccccccchhh--hhHHHHHHHhcCCCCccccccceeeEEecCCC------CCCCCeEEEEeeccccccCCCCCCCCeEE
Confidence 43211 0111 22234577777889876533222221111000 0123343333221 01334
Q ss_pred EEeccCCCCCCCceEEEecC--CCchh
Q psy760 446 IALALPRKFSTWGKFQVSSS--FVVPV 470 (511)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~--~~~p~ 470 (511)
+...+.+|+++ |+++++++ ++.|.
T Consensus 384 ~~~~~~~P~sr-G~V~L~s~d~~~~P~ 409 (560)
T PRK02106 384 AHVGPMRSPSR-GSVKLKSADPRAHPS 409 (560)
T ss_pred EEEEecCCcce-EEEEEeCCCCccCce
Confidence 55567899999 99999876 66664
No 3
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=100.00 E-value=2.1e-52 Score=452.90 Aligned_cols=380 Identities=36% Similarity=0.538 Sum_probs=294.9
Q ss_pred cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCC---ccccccccccc-ccCCCCcCCCccccccccccccCCCCccc
Q psy760 71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN---YLVDIPVLNTN-LILSPLNWGYKTEKEDCRACLGLKGQRCP 146 (511)
Q Consensus 71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~---~~~~ip~~~~~-~~~~~~~w~~~t~p~~~~~~~~~~~~~~~ 146 (511)
||||||||+||+++|.+|||+++.+|||||+|+... .....|..... .....++|.|.+.|+. ...++.+.
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-----~~~~~~~~ 75 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGSDYPWDLLIQMPAALAYPAGNKRYNWIYETEPEP-----HMNNRRVG 75 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCCCCCCCCcceeCcHHHHHhcCCCCcceeeEcccCC-----CCCCceEe
Confidence 899999999999999999994447999999997532 33444543222 2244578999999988 66778899
Q ss_pred cCCcceecccccccccccccCCcccchHHhh-cCCCCCChhchHHHHHHHHhhhcccccCCCCCCCCcccccccCCCCCh
Q psy760 147 WPSGKGVGGTSLINTMLYTRGNKRNYDDWAK-LGNYGWSYNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTEYNTP 225 (511)
Q Consensus 147 ~~rGk~lGGsS~~n~~~~~r~~~~d~~~w~~-~g~~~w~~~~l~~y~~k~e~~~~~~~~~~~~~g~~G~l~v~~~~~~~~ 225 (511)
|++||+|||+|.+|+|+|.|+.+.||+.|++ .|.++|+|++++|||+++|+.... ...+|+..|++.+..++...+
T Consensus 76 ~~~g~~lGGss~in~~~~~R~~~~d~~~w~~~~g~~~W~~~~l~py~~~~E~~~~~---~~~~~g~~G~~~v~~~~~~~~ 152 (532)
T TIGR01810 76 HARGKVLGGSSSINGMIYQRGNPMDYEKWAKPEGMESWDYADCLPYYKRLETTFGG---EKPYRGHDGPIKVRRGPADNP 152 (532)
T ss_pred eecccccCCCCCEeeeEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCC---CcccCCCCCCEEEecCCCCCH
Confidence 9999999999999999999999999999998 588999999999999999988653 235789999999988777788
Q ss_pred HHHHHHHHHHHcCCCC-CCCCCCCccceeecccccCCCcccchhHHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEE
Q psy760 226 MLDAFLQAGMEAGYPL-VDYNGKTQTGFARAQATLHKRSRRSSAKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGV 304 (511)
Q Consensus 226 ~~~~~~~a~~~~G~~~-~~~~~~~~~G~~~~~~~~~~g~r~~~~~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV 304 (511)
..+.+.++++++|++. .+.++....|++.+...+..|.|.++..+|+.++.++.|++|+++++|++|++++ ++|+||
T Consensus 153 ~~~~~~~a~~~~G~~~~~~~~~~~~~g~~~~~~~~~~g~r~s~~~~~l~~a~~r~nl~i~~~~~V~rI~~~~--~ra~GV 230 (532)
T TIGR01810 153 LFQAFIEAGVEAGYNKTPDVNGFRQEGFGPMDSTVHNGRRVSAARAYLHPAMKRPNLEVQTRAFVTKINFEG--NRATGV 230 (532)
T ss_pred HHHHHHHHHHHcCCCccCCCCCCCccceEEEEEEcCCCEEEcHHHHHhhhhccCCCeEEEeCCEEEEEEecC--CeEEEE
Confidence 8899999999999987 4677666778887777778899999999999887778999999999999999985 799999
Q ss_pred EEEECCeEEEEEeCcEEEEccCCCCcHHHHHhcCCCCccccccCCCCccccCc-cchhhhhcccCceEEEEEcCCCCcch
Q psy760 305 LATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIPVIKNLR-VGENLQEHLAMAGLTFLVNQPIGLLQ 383 (511)
Q Consensus 305 ~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~~SGIGp~~~L~~~gi~vv~~~P-VG~nl~DH~~~~~~~~~~~~~~~~~~ 383 (511)
++..+++..++.+.|+||||||+++||+||++|||||+++|+++||+++.++| ||+|||||+.. .+.+.+.++.....
T Consensus 231 ~~~~~~~~~~~~~ak~VIlaAGai~SP~LLl~SGIG~~~~L~~~gI~~~~~lp~VG~nL~DH~~~-~~~~~~~~~~~~~~ 309 (532)
T TIGR01810 231 EFKKGGRKEHTEANKEVILSAGAINSPQLLQLSGIGDAEHLRELGIEPRIHLPGVGENLQDHLEV-YVQHACKQPVSLYP 309 (532)
T ss_pred EEEeCCcEEEEEEeeeEEEccCCCCCHHHHHhcCCCCHHHHHhcCCCeEeeCCccccchhhcccc-eeEEEecCCccccc
Confidence 99876544455555799999999999999999999999999999999999999 99999999997 78888876543211
Q ss_pred h-hhhcchHHHHHhHHhcCCCCcccCccccee-eeehhccchhhhhccCCCeEEEEecC-----------cceeEEEecc
Q psy760 384 D-RLIKEMPVHFAGKLRHSLSPITNSETLSTN-IKTIFAAHHDKINKSGEDITIRLIKD-----------LIGILIALAL 450 (511)
Q Consensus 384 ~-~~~~~~~~~~~~~~~~~~Gpl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~ 450 (511)
. .... ...+..+|+..+.|++........+ ++... ....+++++.+.+. ..+..+...+
T Consensus 310 ~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-------~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (532)
T TIGR01810 310 SLNWLK-QPFIGAQWLFGRKGAGASNHFEGGGFVRSND-------DVDYPNIQYHFLPVAIRYDGTKAPKAHGFQVHVGP 381 (532)
T ss_pred ccchhh-hhHHHHHHHhcCCCCccccccceeEEEecCC-------CCCCCCeEEEEEeeeeccCCCCCCCCCcEEEEEee
Confidence 0 0000 1223446777788887654332222 21110 01124444443221 0123455567
Q ss_pred CCCCCCCceEEEecC--CCchh
Q psy760 451 PRKFSTWGKFQVSSS--FVVPV 470 (511)
Q Consensus 451 ~~~~~~~~~~~~~~~--~~~p~ 470 (511)
.+|+|+ |++++++. ++.|.
T Consensus 382 ~~P~sr-G~V~L~s~dp~~~P~ 402 (532)
T TIGR01810 382 MYSNSR-GHVKIKSKDPFEKPE 402 (532)
T ss_pred cCCCCc-eEEEecCCCCccCce
Confidence 889999 99999776 55553
No 4
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=100.00 E-value=1.8e-51 Score=413.72 Aligned_cols=288 Identities=40% Similarity=0.670 Sum_probs=233.8
Q ss_pred ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCCcccccccc-cccccCCCCcCCCccccccccccccCCCCccccC
Q psy760 70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLVDIPVL-NTNLILSPLNWGYKTEKEDCRACLGLKGQRCPWP 148 (511)
Q Consensus 70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~~~~~ip~~-~~~~~~~~~~w~~~t~p~~~~~~~~~~~~~~~~~ 148 (511)
|||||||||++|+++|.+||++++.+|||||||+........+.. ........++|.+.+.++. ..+++...++
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 75 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYPPEDSTPPSSFYQDFDSEYDWGYYSGPQP-----FLNGRTINWP 75 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCTTSGHHGGGGGGGCTTTTTBBGEEECEEE-----CTTTTSEEEE
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCccccchhhhccccccCccccccccccccc-----ccccceeeee
Confidence 899999999999999999999545799999999876543322211 2223345678888888777 6788889999
Q ss_pred CcceecccccccccccccCCcccchHHhhc-CCCCCChhchHHHHHHHHhhhcccccCCCCCCCCccccc-ccCCCCChH
Q psy760 149 SGKGVGGTSLINTMLYTRGNKRNYDDWAKL-GNYGWSYNEVLPYFKKAERIQISELQNSSYHGTQGFIGV-DYTEYNTPM 226 (511)
Q Consensus 149 rGk~lGGsS~~n~~~~~r~~~~d~~~w~~~-g~~~w~~~~l~~y~~k~e~~~~~~~~~~~~~g~~G~l~v-~~~~~~~~~ 226 (511)
+|++|||+|.+|+|++.|+.+.||+.|... |.++|+|+++.+||+++|+...+. ...++..+++.+ .......+.
T Consensus 76 ~G~~lGGsS~in~~~~~R~~~~df~~w~~~~g~~~w~~~~l~~~~~~~e~~~~~~---~~~~g~~~~~~v~~~~~~~~~~ 152 (296)
T PF00732_consen 76 RGKGLGGSSAINGGVYFRPSPSDFDEWAREFGADGWSWDDLEPYYDKAETFLGPS---SDLHGVDGPLPVSSSPPYPSPM 152 (296)
T ss_dssp EB-STTGGGGTS--BE-B--HHHHHHHHHTTTCTTGSHHHHHHHHHHHEEEHTTB---GGGSCBSSSEEEHHHCSCHCTH
T ss_pred cceecCCcccccccccccCCcccchhhhhcccccccchhhHHHHHHHHHhhcccc---ccccccccccccccccCCCCHH
Confidence 999999999999999999999999999987 888999999999999999887764 557788888888 455566778
Q ss_pred HHHHHHHHHHcCCCC-CCCCCCCccceeecccccCCCcccchhHHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEE
Q psy760 227 LDAFLQAGMEAGYPL-VDYNGKTQTGFARAQATLHKRSRRSSAKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVL 305 (511)
Q Consensus 227 ~~~~~~a~~~~G~~~-~~~~~~~~~G~~~~~~~~~~g~r~~~~~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~ 305 (511)
...+.++++++|++. .+.+.....|++.....|..+.|.++..+||.++.++.|++|+++++|++|++++++++|+||+
T Consensus 153 ~~~~~~a~~~~G~~~~~~~~~~~~~g~~~~~~~~~~g~r~s~~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~ 232 (296)
T PF00732_consen 153 NQALMDAAEELGIPVPQDFNGCDPCGFCMTGFNCPNGARSSAATTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVE 232 (296)
T ss_dssp HHHHHHHHHHTTHHBCSCTTSSTCSEEEECEECECTTCBBHHHHHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEE
T ss_pred HHHHHHHHHHcCCccccccccccccccccccccccchhceehhhcccchhhccCCccEEcCcEEEEEeeeccccceeeee
Confidence 899999999999994 5777777888887776788999999999999998888899999999999999986568999999
Q ss_pred EEECCe---EEEEEeCcEEEEccCCCCcHHHHHhcCCCCccccccCCCCccccCccchhhhhcc
Q psy760 306 ATIKGI---DHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIPVIKNLRVGENLQEHL 366 (511)
Q Consensus 306 ~~~~g~---~~~v~A~k~VILAAGa~~SP~LL~~SGIGp~~~L~~~gi~vv~~~PVG~nl~DH~ 366 (511)
+.+.+. .+.+.+ |+||||||+++||+||++|||||.++|+++||+++.++|||+||||||
T Consensus 233 ~~~~~~~~~~~~~~a-k~VIlaAGai~Tp~LLl~SGiG~~~~L~~~gi~~~~~lpVG~nl~dH~ 295 (296)
T PF00732_consen 233 YVDNDGGVQRRIVAA-KEVILAAGAIGTPRLLLRSGIGPKDHLDALGIPVVVDLPVGRNLQDHP 295 (296)
T ss_dssp EEETTTSEEEEEEEE-EEEEE-SHHHHHHHHHHHTTEE-HHHHHHTTHHHSEE-TTTECEB--E
T ss_pred eeecCCcceeeeccc-eeEEeccCCCCChhhhcccccccHHHHHHcCCCceeeCcchhchhccc
Confidence 996433 344545 689999999999999999999999999999999999999999999997
No 5
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=100.00 E-value=2e-48 Score=419.72 Aligned_cols=384 Identities=35% Similarity=0.572 Sum_probs=306.5
Q ss_pred ccCCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCCc-ccccccccccccCC-CCcCCCccccccccccccCCC
Q psy760 65 DLLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNY-LVDIPVLNTNLILS-PLNWGYKTEKEDCRACLGLKG 142 (511)
Q Consensus 65 ~~~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~~-~~~ip~~~~~~~~~-~~~w~~~t~p~~~~~~~~~~~ 142 (511)
.+..+|||||||+|.+|+++|.+|++ +|.+|+|||+|+.... ...+|......... ..+|.|.++++. ...+
T Consensus 3 ~~~~~~D~vIVGsG~aG~~lA~rLs~-~g~~VllLEaG~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~-----~~~~ 76 (542)
T COG2303 3 EMKMEYDYVIVGSGSAGSVLAARLSD-AGLSVLVLEAGGPDRRPLIQMPAAYAFLMNGPRYDWGFRTEPEP-----HLRG 76 (542)
T ss_pred cccCCCCEEEECCCchhHHHHHHhcC-CCCeEEEEeCCCCCCccceecchhHhhhccCcccCCccccCccc-----CCCC
Confidence 45678999999999999999999995 9999999999986543 55667665555544 889999999988 8889
Q ss_pred CccccCCcceecccccccccccccCCcccchHHhhc-CCCCCChhchHHHHHHHHhhhcccccC-CCCCCCCcccccccC
Q psy760 143 QRCPWPSGKGVGGTSLINTMLYTRGNKRNYDDWAKL-GNYGWSYNEVLPYFKKAERIQISELQN-SSYHGTQGFIGVDYT 220 (511)
Q Consensus 143 ~~~~~~rGk~lGGsS~~n~~~~~r~~~~d~~~w~~~-g~~~w~~~~l~~y~~k~e~~~~~~~~~-~~~~g~~G~l~v~~~ 220 (511)
+.+.|+|||+|||+|.+|+|.|.|+++.||+.|.+. |.++|.|++++|||+++|+.......+ ...|+..||+.+...
T Consensus 77 r~~~~~rgk~lGGsS~ing~~~~R~~~~Df~~w~~~~G~~~W~y~d~lPyf~~aE~~~~~~g~~~~~~~g~~gp~~~~~~ 156 (542)
T COG2303 77 RELAWPRGKVLGGSSSINGMVYVRGHPEDFDAWAQESGAPGWPYDDVLPYFKRAEDLLGVGGQDLRTWHGGGGPLPVSPP 156 (542)
T ss_pred ccccccccCcccchhhhccceeecCCHHHHHHHHhhcCCCCCCccccHHHHHHHHhhcCCCCCCCCCCcCCCCCccccCC
Confidence 999999999999999999999999999999999876 789999999999999999976653322 458999999999887
Q ss_pred CCCChHHHHHHHHHHHcCCCC-CCCCCCCccceeecccccCCCcccchhHHhhHhhhhCCCcEEEeCceEEEEEEcCCCC
Q psy760 221 EYNTPMLDAFLQAGMEAGYPL-VDYNGKTQTGFARAQATLHKRSRRSSAKDYIDPIKKRCNLTVKDSSFVKKILIDPVTK 299 (511)
Q Consensus 221 ~~~~~~~~~~~~a~~~~G~~~-~~~~~~~~~G~~~~~~~~~~g~r~~~~~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ 299 (511)
....+..+.+.++..++|++. .++++....|++.+..++..|.|.++..+||.++.++.|++|++++.|++|++++ +
T Consensus 157 ~~~~~~~~a~~~a~~~~G~~~~~~~~~~~~~g~g~~~~~~~~g~r~sa~~a~l~~a~~~~nl~v~t~a~v~ri~~~~--~ 234 (542)
T COG2303 157 RSPNPIARAFIEAGEQLGFPTTPDPNGADQEGFGPYCVTICNGRRWSAARAYLKPALKRPNLTLLTGARVRRILLEG--D 234 (542)
T ss_pred CCchHHHHHHHHHHHHcCCCcCcccccCCCCCcccceeeccCCeEeechhhcchhHhcCCceEEecCCEEEEEEEEC--C
Confidence 666889999999999999998 5788888889988888888999999999999999999999999999999999998 7
Q ss_pred cEEEEEEEECCe--EEEEEeCcEEEEccCCCCcHHHHHhcCCCCccccccCCCCccccCc-cchhhhhcccCceEEEEEc
Q psy760 300 KACGVLATIKGI--DHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIPVIKNLR-VGENLQEHLAMAGLTFLVN 376 (511)
Q Consensus 300 ra~GV~~~~~g~--~~~v~A~k~VILAAGa~~SP~LL~~SGIGp~~~L~~~gi~vv~~~P-VG~nl~DH~~~~~~~~~~~ 376 (511)
|++||++..++. .....+.++||||||+++||+|||+||||+.+.+..+||.++.++| ||+|||||+.. .+.+...
T Consensus 235 r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~Sp~LL~~Sgig~~~~~~~~g~~~v~~~~~vg~nl~dH~~~-~~~~~~~ 313 (542)
T COG2303 235 RAVGVEVEIGDGGTIETAVAAREVVLAAGAINSPKLLLLSGIGPADHLLEHGIDVVGRLPGVGQNLQDHLEI-YVAFEAT 313 (542)
T ss_pred eeEEEEEEeCCCCceEEEecCceEEEeccccCCHHHHHhcCCCchhhhhhcCCeeeecCcchhHHHHhhhhh-hhheecc
Confidence 999999986432 2344455699999999999999999999999999999999999999 99999999998 6777776
Q ss_pred CCCCcchhhhhcchHHHHHhHHhcCCCCcccCcccceeeeehhccchhhhhccCCCeEEEEe---------cCcceeEEE
Q psy760 377 QPIGLLQDRLIKEMPVHFAGKLRHSLSPITNSETLSTNIKTIFAAHHDKINKSGEDITIRLI---------KDLIGILIA 447 (511)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~Gpl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~ 447 (511)
...................+|...+.|+..+++....+.+.... ...+++++.+. .+..+..+.
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~gf~~~~~~-------~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (542)
T COG2303 314 EPTNDSVLSLFSKLGIGADRYLLTRDGPGATNHFEGGFVRSGPA-------GEYPDGQYHFAPLPLAIRAAGAEHGFTLH 386 (542)
T ss_pred CccccccccccccccccceeEEeecCCCcccccccccccccCcc-------ccCCCcccccccccccccccccCCccEEe
Confidence 65411100000001122355666788888765433322222111 11223333331 112357888
Q ss_pred eccCCCCCCCceEEEecC
Q psy760 448 LALPRKFSTWGKFQVSSS 465 (511)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~ 465 (511)
....++.++ |.+.+.+.
T Consensus 387 ~~~~rp~sr-g~v~~~~~ 403 (542)
T COG2303 387 VGPMRPKSR-GSVTLRSP 403 (542)
T ss_pred eccCCCccc-cceecCCC
Confidence 888999998 88888777
No 6
>PLN02785 Protein HOTHEAD
Probab=100.00 E-value=1.4e-45 Score=399.86 Aligned_cols=274 Identities=27% Similarity=0.414 Sum_probs=212.3
Q ss_pred CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCCcccccccccccccCCCCcCCCccccccccccccCCCCccc
Q psy760 67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLVDIPVLNTNLILSPLNWGYKTEKEDCRACLGLKGQRCP 146 (511)
Q Consensus 67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~~~~~ip~~~~~~~~~~~~w~~~t~p~~~~~~~~~~~~~~~ 146 (511)
..+|||||||||+|||++|.+|++ +.+|||||+|+.......++... .+.....+|.|.+.+|. ..+++.+.
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~--~~~VLllE~G~~~~~~~~~~~~~-~~~~~~~d~~~~~~~q~-----~~~~~~~~ 124 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQ--NFSVLLLERGGVPFGNANVSFLE-NFHIGLADTSPTSASQA-----FISTDGVI 124 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhc--CCcEEEEecCCCCCCCchhhhHH-hhCCcccccCCcccccc-----ccCCCcee
Confidence 457999999999999999999999 48999999997532111111111 12234578999988887 56678899
Q ss_pred cCCcceecccccccccccccCCcccchHHhhcCCCCCChhchHHHHHHHHhhhcccccCCCCCCCCcccccccCCCCChH
Q psy760 147 WPSGKGVGGTSLINTMLYTRGNKRNYDDWAKLGNYGWSYNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTEYNTPM 226 (511)
Q Consensus 147 ~~rGk~lGGsS~~n~~~~~r~~~~d~~~w~~~g~~~w~~~~l~~y~~k~e~~~~~~~~~~~~~g~~G~l~v~~~~~~~~~ 226 (511)
++|||+|||+|.+|+|.|.|+++.||+. .+|+|+.+.+||++.|+.... .+...+.
T Consensus 125 ~~rGr~LGGsS~iN~~~y~Rg~~~d~~~------~GW~~~~~~~~~~~~e~~~~~------------------~~~~~~~ 180 (587)
T PLN02785 125 NARARVLGGGTCINAGFYSRASTRFIQK------AGWDAKLVNESYPWVERQIVH------------------WPKVAPW 180 (587)
T ss_pred ccccceecchhhhcCeEEEeCCHHHhcc------CCCCcccccchHHHHhccccc------------------CCCcChH
Confidence 9999999999999999999999999954 579999999999999875210 1123466
Q ss_pred HHHHHHHHHHcCCCCCCCCCCC---ccceeeccccc--CCCcccchhHHhhHhhhhCCCcEEEeCceEEEEEEcCCC--C
Q psy760 227 LDAFLQAGMEAGYPLVDYNGKT---QTGFARAQATL--HKRSRRSSAKDYIDPIKKRCNLTVKDSSFVKKILIDPVT--K 299 (511)
Q Consensus 227 ~~~~~~a~~~~G~~~~~~~~~~---~~G~~~~~~~~--~~g~r~~~~~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~--~ 299 (511)
...+.+++.++|++. +++.. ..|. ....++ ..|.|.++.. ++ +.+++.|++|++++.|++|++++++ +
T Consensus 181 ~~~~~~a~~e~G~~~--~n~~~~d~~~G~-~~g~~i~~~~g~R~saa~-l~-~~~~~~nl~Vl~~a~V~rIl~~~~~~~~ 255 (587)
T PLN02785 181 QAALRDSLLEVGVSP--FNGFTYDHVYGT-KVGGTIFDEFGRRHTAAE-LL-AAGNPNKLRVLLHATVQKIVFDTSGKRP 255 (587)
T ss_pred HHHHHHHHHHcCCCc--cCCCCCCCccce-eeeEEEeCCCCEEcCHHH-HH-hhcCCCCeEEEeCCEEEEEEEcCCCCCc
Confidence 789999999999974 23211 1111 111223 3467777665 44 5677899999999999999998632 3
Q ss_pred cEEEEEEEE-CCeEEEE----EeCcEEEEccCCCCcHHHHHhcCCCCccccccCCCCccccCc-cchhhhhcccCceEEE
Q psy760 300 KACGVLATI-KGIDHKI----LARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIPVIKNLR-VGENLQEHLAMAGLTF 373 (511)
Q Consensus 300 ra~GV~~~~-~g~~~~v----~A~k~VILAAGa~~SP~LL~~SGIGp~~~L~~~gi~vv~~~P-VG~nl~DH~~~~~~~~ 373 (511)
+|+||++.+ +|+..++ +++|+||||||+++||+|||+|||||+++|+++||||+.|+| ||+||+||+.. .+.+
T Consensus 256 ra~GV~~~~~~g~~~~~~~~~~~~~eVILsAGai~sP~lL~~SGIGp~~~L~~~gIpvv~dlP~VG~NL~DHp~~-~i~~ 334 (587)
T PLN02785 256 RATGVIFKDENGNQHQAFLSNNKGSEIILSAGAIGSPQMLLLSGIGPKKELKKHKIPVVLHNEHVGKGMADNPMN-SIFV 334 (587)
T ss_pred eEEEEEEEECCCceEEEEeecccCceEEecccccCCHHHHHHcCCCCHHHHHHcCCCeeecCCCcccchhhCccc-ceEE
Confidence 899999975 4544333 256799999999999999999999999999999999999999 99999999997 6888
Q ss_pred EEcCC
Q psy760 374 LVNQP 378 (511)
Q Consensus 374 ~~~~~ 378 (511)
.++.+
T Consensus 335 ~~~~~ 339 (587)
T PLN02785 335 PSKAP 339 (587)
T ss_pred EeCCC
Confidence 76654
No 7
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=99.93 E-value=5.9e-25 Score=234.92 Aligned_cols=273 Identities=21% Similarity=0.198 Sum_probs=165.4
Q ss_pred ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCCcccccccccc---------------c----cc-----------
Q psy760 70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLVDIPVLNT---------------N----LI----------- 119 (511)
Q Consensus 70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~~~~~ip~~~~---------------~----~~----------- 119 (511)
|||||||+|++|+++|..|++ .|.+|+|||++..... ... +... . ++
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~-~g~~v~~~e~~~~~~~-~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVD-AGLKVAMVEIGAADSF-LKI-GAHKKNEIEYQKDIDKFVNVIKGALQSVSVPVSNLVI 77 (544)
T ss_pred CcEEEECCchHHHHHHHHHHH-CCCeEEEEeccCccCC-Ccc-cccccccccccccHHHHHHHHhhhccccccccccCCc
Confidence 799999999999999999999 7999999999876531 000 0000 0 00
Q ss_pred --CCCCcCCCccccccccc-cccCC---CCcccc---CCcceecccccccccccccCCcccchHHhhcCCCCC--Chhch
Q psy760 120 --LSPLNWGYKTEKEDCRA-CLGLK---GQRCPW---PSGKGVGGTSLINTMLYTRGNKRNYDDWAKLGNYGW--SYNEV 188 (511)
Q Consensus 120 --~~~~~w~~~t~p~~~~~-~~~~~---~~~~~~---~rGk~lGGsS~~n~~~~~r~~~~d~~~w~~~g~~~w--~~~~l 188 (511)
..+..|.-. |.. +. ..+-+ +-..++ .|-+.+||+|.+|++.+.|+++.+. .| .+ .+| +|+++
T Consensus 78 ~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~ar~R~vGGsS~hW~g~~~R~~p~~r-~g--~~-~dWPI~y~eL 150 (544)
T TIGR02462 78 PTLDPTAWSAS--IES-FFVSNGKNPEQDPFRNLSGEAVTRGVGGMSTHWTCATPRFHREER-PK--LS-DDAAEDDAEW 150 (544)
T ss_pred CCCCccccccC--CCc-ceecCCCCcccCchhccChhheeeccCchhhhcCcccCCCCHHhc-cC--CC-CCCCCCHHHH
Confidence 000112110 000 00 00000 001112 2457899999999999999998642 22 12 588 89999
Q ss_pred HHHHHHHHhhhcccccCCCCCCCCcccccccCCCCChHHHHHHHHHHHcCC-CCC-CCCCCCccceeecccccCCCcccc
Q psy760 189 LPYFKKAERIQISELQNSSYHGTQGFIGVDYTEYNTPMLDAFLQAGMEAGY-PLV-DYNGKTQTGFARAQATLHKRSRRS 266 (511)
Q Consensus 189 ~~y~~k~e~~~~~~~~~~~~~g~~G~l~v~~~~~~~~~~~~~~~a~~~~G~-~~~-~~~~~~~~G~~~~~~~~~~g~r~~ 266 (511)
.|||.++|++..... .. ...+.......+.+.+.++ |. ... ...+ +.. ..|..+.+++
T Consensus 151 ~PyY~~Ae~~~gv~g----------~~-~~~~~~~~~~~~~~~~~~~--g~~~~~~~PlA-----~~~--~~c~~~ak~s 210 (544)
T TIGR02462 151 DRLYTKAESLIGTST----------DQ-FDESIRHNLVLRKLQDEYK--GQRDFQPLPLA-----CHR--RTDPTYVEWH 210 (544)
T ss_pred HHHHHHHHHHhCCCC----------Cc-CCCcccchhHHHHHHHHhc--cccccccCchh-----hhc--cCCCccceec
Confidence 999999999876532 10 0000011122222333332 22 110 0001 000 0122233444
Q ss_pred hhHHhhHhhh----hCCCcEEEeCceEEEEEEcCCC-CcEEEEEEEE--CCeEEEEEeCcEEEEccCCCCcHHHHHhcCC
Q psy760 267 SAKDYIDPIK----KRCNLTVKDSSFVKKILIDPVT-KKACGVLATI--KGIDHKILARKEVILSAGAFNSPKLLMLSGI 339 (511)
Q Consensus 267 ~~~~~L~~~~----~r~gv~v~~~t~V~~I~~d~~~-~ra~GV~~~~--~g~~~~v~A~k~VILAAGa~~SP~LL~~SGI 339 (511)
+....+..+. ++.|++|++++.|++|++++++ ++|++|++.+ +++.++++|+ .||||||+++||+||++|++
T Consensus 211 ~~~t~~~~~~~~~~~~~n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~~~g~~~~v~A~-~vVLAagaIetpRLLL~S~~ 289 (544)
T TIGR02462 211 SADTVFDLQPNDDAPSERFTLLTNHRCTRLVRNETNESEIEAALVRDLLSGDRFEIKAD-VYVLACGAVHNPQILVNSGF 289 (544)
T ss_pred CCccchhhhhhhhccCCCEEEEcCCEEEEEEeCCCCCceeEEEEEEECCCCcEEEEECC-EEEEccCchhhHHHHHhCCC
Confidence 3323343332 4678999999999999998754 5899999885 5777889997 79999999999999999999
Q ss_pred CCccccccCCCCcccc--Cc-cchhhhhcccCceEEEEEcCC
Q psy760 340 GPQEHLNDLNIPVIKN--LR-VGENLQEHLAMAGLTFLVNQP 378 (511)
Q Consensus 340 Gp~~~L~~~gi~vv~~--~P-VG~nl~DH~~~~~~~~~~~~~ 378 (511)
+...... |+ ..+ .+ ||+||+||+.. .+.+.+.++
T Consensus 290 ~~~~~p~--gl--~Nss~~g~VGRnlmdh~~~-~~~~~~~~~ 326 (544)
T TIGR02462 290 GQLGRPD--PT--NPPPLLPSLGRYITEQSMT-FCQIVLSTE 326 (544)
T ss_pred CCCcCCC--Cc--CCCCCCCCCCcchhcCCCc-cEEEEecch
Confidence 8533221 11 111 25 99999999987 566666544
No 8
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.89 E-value=1.9e-24 Score=216.29 Aligned_cols=309 Identities=16% Similarity=0.117 Sum_probs=203.6
Q ss_pred CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCCcccccccccccccCCCCcCCCccccccccccccCCCCcccc
Q psy760 68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLVDIPVLNTNLILSPLNWGYKTEKEDCRACLGLKGQRCPW 147 (511)
Q Consensus 68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~~~~~ip~~~~~~~~~~~~w~~~t~p~~~~~~~~~~~~~~~~ 147 (511)
+.+||||||||+||+.||..+++ .|++|+|+|+++....+..++++++|+.++... .++--.++
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~-~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~---------------~~~~ls~~ 65 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAK-AGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEA---------------PDEFLSRN 65 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhh-cCCEEEEEecCccccceeEecCCCCcccccccc---------------HHHHHHhC
Confidence 36999999999999999999999 899999999999999999999999998874322 11111112
Q ss_pred CCcceecccccccccccccCCcccchHHhhcCCCCCChhchHHHHHHHHhhhcccccCCCCCCCCcccccccCCCCChHH
Q psy760 148 PSGKGVGGTSLINTMLYTRGNKRNYDDWAKLGNYGWSYNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTEYNTPML 227 (511)
Q Consensus 148 ~rGk~lGGsS~~n~~~~~r~~~~d~~~w~~~g~~~w~~~~l~~y~~k~e~~~~~~~~~~~~~g~~G~l~v~~~~~~~~~~ 227 (511)
| |.+.+-...+.|+.+.|+..|.+. .+-+++......++|..
T Consensus 66 p------~~~~fl~sal~~ft~~d~i~~~e~--------------------------------~Gi~~~e~~~Gr~Fp~s 107 (408)
T COG2081 66 P------GNGHFLKSALARFTPEDFIDWVEG--------------------------------LGIALKEEDLGRMFPDS 107 (408)
T ss_pred C------CcchHHHHHHHhCCHHHHHHHHHh--------------------------------cCCeeEEccCceecCCc
Confidence 2 222222225667777777777431 11223333333333321
Q ss_pred HHHHHHHHHcCCCCCCCCCCCccceeecccccCCCcccchhHHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEE
Q psy760 228 DAFLQAGMEAGYPLVDYNGKTQTGFARAQATLHKRSRRSSAKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLAT 307 (511)
Q Consensus 228 ~~~~~a~~~~G~~~~~~~~~~~~G~~~~~~~~~~g~r~~~~~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~ 307 (511)
. +.+.....|...+++.|++|+++++|.+|..++. +..+.
T Consensus 108 d-----------------------------------kA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~-----~f~l~ 147 (408)
T COG2081 108 D-----------------------------------KASPIVDALLKELEALGVTIRTRSRVSSVEKDDS-----GFRLD 147 (408)
T ss_pred c-----------------------------------chHHHHHHHHHHHHHcCcEEEecceEEeEEecCc-----eEEEE
Confidence 1 3344445565667889999999999999988763 45555
Q ss_pred ECCeEEEEEeCcEEEEccCCCCcHHHHHhcCCCCccccccCCCCccccCc--cchhhhhcccCceEEEEEcCCCCcchhh
Q psy760 308 IKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIPVIKNLR--VGENLQEHLAMAGLTFLVNQPIGLLQDR 385 (511)
Q Consensus 308 ~~g~~~~v~A~k~VILAAGa~~SP~LL~~SGIGp~~~L~~~gi~vv~~~P--VG~nl~DH~~~~~~~~~~~~~~~~~~~~ 385 (511)
..+.+ +|+|+ .+|||+|+..-|++= -.|.|= ..++++||+|+...| |+..+.....- .+......++......
T Consensus 148 t~~g~-~i~~d-~lilAtGG~S~P~lG-stg~gy-~iA~~~G~~I~~~rpalvpft~~~~~~~-~l~gls~~~v~~~v~~ 222 (408)
T COG2081 148 TSSGE-TVKCD-SLILATGGKSWPKLG-STGFGY-PIARQFGHTITPLRPALVPFTLDESFLE-RLAGLSLKSVPLSVTA 222 (408)
T ss_pred cCCCC-EEEcc-EEEEecCCcCCCCCC-CCchhh-HHHHHcCCccccCccccCCccCCHHHHH-HhcCCcccceEEEEec
Confidence 43332 69998 599999998788531 112211 126789999988888 88877632211 2222222222222111
Q ss_pred hhcchHHHHHhHHhcCCCCcccCccccee---eeehhccchhhhhcc-CCCeEEEEecCcceeEEEeccCCCCCCCceEE
Q psy760 386 LIKEMPVHFAGKLRHSLSPITNSETLSTN---IKTIFAAHHDKINKS-GEDITIRLIKDLIGILIALALPRKFSTWGKFQ 461 (511)
Q Consensus 386 ~~~~~~~~~~~~~~~~~Gpl~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (511)
-.. ...+|.+..||.+.+| ++.|.+-. + .++. ...+.|++.++.+.+++...+ +..++++.
T Consensus 223 ~~g----------~~~~g~~LfTh~GiSGPavl~~Ss~~~-~-~~~~~~~~i~iDllP~~~~~~l~~~l---~~~~~~ks 287 (408)
T COG2081 223 GKG----------ITFQGDLLFTHRGLSGPAVLQLSSYWR-L-LEKKGGATLSIDLLPDVDAEELLREL---RRANPKKS 287 (408)
T ss_pred CCC----------ceeecceEEEecCCcHHHHHHHHHHHH-H-hccCCCceEEEecCCCCCHHHHHHHH---HhhChhhH
Confidence 000 2456899999999998 77765444 3 4444 789999999987654444444 55679999
Q ss_pred EecC--CCchhHHH---HHhhccccccccceeeee
Q psy760 462 VSSS--FVVPVWFW---LVQNGCQMSGKWSNLYWY 491 (511)
Q Consensus 462 ~~~~--~~~p~~~~---~~~~~~~~~~~~~~~~~~ 491 (511)
+.+. -.+|.|+| +.+.|| .+..|+++-+-
T Consensus 288 lkn~L~~~lp~rlv~~~l~~~~i-~~~~~~~ls~~ 321 (408)
T COG2081 288 LKNALAKLLPKRLVEFLLERAGI-PDEPLAQLSPK 321 (408)
T ss_pred HHHHHHHHhhhHHHHHHHHhccC-CCcchhhcCHH
Confidence 9888 55999998 999999 89999998763
No 9
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.87 E-value=1.2e-24 Score=226.33 Aligned_cols=305 Identities=19% Similarity=0.178 Sum_probs=176.9
Q ss_pred ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCCcccccccccccccCC-CCcCCCccccccccccccCCCCccccC
Q psy760 70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLVDIPVLNTNLILS-PLNWGYKTEKEDCRACLGLKGQRCPWP 148 (511)
Q Consensus 70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~~~~~ip~~~~~~~~~-~~~w~~~t~p~~~~~~~~~~~~~~~~~ 148 (511)
|||||||||+||++||+.|++ .|.+|+||||++....+..+.+.++|+.++ ..+.. . |
T Consensus 1 ydviIIGgGaAGl~aA~~aa~-~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~------~-------------~- 59 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAE-KGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPS------E-------------F- 59 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHH-TT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGG------G-------------E-
T ss_pred CcEEEECCCHHHHHHHHHHHh-CCCCEEEEeCCcccccceeecCCCCccccccccchh------h-------------H-
Confidence 899999999999999999999 899999999999888777777777777653 11110 0 0
Q ss_pred CcceecccccccccccccCCcccchHHhhcCCCCCChhchHHHHHHHHhhhcccccCCCCCCCCcccccccCCCCChHHH
Q psy760 149 SGKGVGGTSLINTMLYTRGNKRNYDDWAKLGNYGWSYNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTEYNTPMLD 228 (511)
Q Consensus 149 rGk~lGGsS~~n~~~~~r~~~~d~~~w~~~g~~~w~~~~l~~y~~k~e~~~~~~~~~~~~~g~~G~l~v~~~~~~~~~~~ 228 (511)
..+ |.+ ..++-. +.+++ -..+
T Consensus 60 ----~~~--------~~~--~~~f~~---------------~~l~~------------------------------f~~~ 80 (409)
T PF03486_consen 60 ----LSG--------YGR--NPKFLK---------------SALKR------------------------------FSPE 80 (409)
T ss_dssp ----ECS---------TB--TTTCTH---------------HHHHH------------------------------S-HH
T ss_pred ----hhh--------ccc--chHHHH---------------HHHhc------------------------------CCHH
Confidence 000 000 000000 00000 0113
Q ss_pred HHHHHHHHcCCCCCCCCCCCccceeecccccCCCcccchhHHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEE
Q psy760 229 AFLQAGMEAGYPLVDYNGKTQTGFARAQATLHKRSRRSSAKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATI 308 (511)
Q Consensus 229 ~~~~a~~~~G~~~~~~~~~~~~G~~~~~~~~~~g~r~~~~~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~ 308 (511)
.+++.++++|++..... .|..+ |.+ .+..+....|...+++.|++|+++++|++|..++ +.+..|++ .
T Consensus 81 d~~~ff~~~Gv~~~~~~----~gr~f-P~s----~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~--~~~f~v~~-~ 148 (409)
T PF03486_consen 81 DLIAFFEELGVPTKIEE----DGRVF-PKS----DKASSVVDALLEELKRLGVEIHFNTRVKSIEKKE--DGVFGVKT-K 148 (409)
T ss_dssp HHHHHHHHTT--EEE-S----TTEEE-ETT------HHHHHHHHHHHHHHHT-EEE-S--EEEEEEET--TEEEEEEE-T
T ss_pred HHHHHHHhcCCeEEEcC----CCEEC-CCC----CcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecC--CceeEeec-c
Confidence 34455555565542111 11111 111 1334455566666788999999999999999876 45556665 2
Q ss_pred CCeEEEEEeCcEEEEccCCCCcHHH------HHhcCCCCccccccCCCCccccCc--cchhhhhccc----CceEEEEEc
Q psy760 309 KGIDHKILARKEVILSAGAFNSPKL------LMLSGIGPQEHLNDLNIPVIKNLR--VGENLQEHLA----MAGLTFLVN 376 (511)
Q Consensus 309 ~g~~~~v~A~k~VILAAGa~~SP~L------L~~SGIGp~~~L~~~gi~vv~~~P--VG~nl~DH~~----~~~~~~~~~ 376 (511)
+++ .+.|+ .||||+|+...|++ +.. ++++||+|+...| |+....+... ..++.....
T Consensus 149 ~~~--~~~a~-~vILAtGG~S~p~~GS~G~gy~~--------a~~lGh~i~~~~PaL~~l~~~~~~~~~~~l~Gv~~~~~ 217 (409)
T PF03486_consen 149 NGG--EYEAD-AVILATGGKSYPKTGSDGSGYRI--------AKKLGHTITPPYPALVPLKCDEPWLFFKELSGVRLKAV 217 (409)
T ss_dssp TTE--EEEES-EEEE----SSSGGGT-SSHHHHH--------HHHTT--EEEEEEES--EE--HHHHHTGGGTT-EEEEE
T ss_pred Ccc--cccCC-EEEEecCCCCccccCCCcHHHHH--------HHHCCCcEecCCCccCCeeecchhhhhhhhCCCceeeE
Confidence 333 78897 69999999877763 333 6789999999988 8777776643 113322211
Q ss_pred CCCCcchhhhhcchHHHHHhHHhcCCCCcccCccccee---eeehhccchhhhhccCCCeEEEEecCcceeEEEeccCCC
Q psy760 377 QPIGLLQDRLIKEMPVHFAGKLRHSLSPITNSETLSTN---IKTIFAAHHDKINKSGEDITIRLIKDLIGILIALALPRK 453 (511)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~Gpl~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (511)
......... ...+|.++.+|++.+| +++|....+.+..+....|.|+|.++.+.+++.+.|.+.
T Consensus 218 --~~~~~~~~~-----------~~~~GellfT~~GiSGp~il~lS~~~~~~l~~~~~~~i~id~~p~~~~e~l~~~l~~~ 284 (409)
T PF03486_consen 218 --ISLLDGKKK-----------ASETGELLFTHYGISGPAILQLSRFIARALNKKKKVEISIDFLPDLSEEELEELLQER 284 (409)
T ss_dssp --EEEE-ECTC-----------EEEEEEEEE-SSEEESHHHHHHTTTHHHHHH--TTEEEEEESSTTS-HHHHHHHHHHH
T ss_pred --EEEeccCCc-----------cceeeeEEEECCccchHHHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHH
Confidence 111101111 4678999999999998 888887777777677899999999997777788888887
Q ss_pred CCCCceEEEecC--CCchhHHH---HHhhcc-ccccccceeee
Q psy760 454 FSTWGKFQVSSS--FVVPVWFW---LVQNGC-QMSGKWSNLYW 490 (511)
Q Consensus 454 ~~~~~~~~~~~~--~~~p~~~~---~~~~~~-~~~~~~~~~~~ 490 (511)
+...+++.+.+. -.+|.||| +.+.++ +.+.+|+++-.
T Consensus 285 ~~~~~~~~~~~~l~~~lp~rl~~~ll~~~~i~~~~~~~~~l~~ 327 (409)
T PF03486_consen 285 KEKNPKRTLKNFLKGLLPKRLALALLKRAGIKDPDKKVSELSK 327 (409)
T ss_dssp HHHTTTSBHHHHHTTTS-HHHHHHHHHHTTS-STTSBGGGS-H
T ss_pred HHHHHhhHHHHHHHHHhHHHHHHHHHHHcCCCccccchhhcCH
Confidence 776778887776 45999999 888999 99999998754
No 10
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=99.71 E-value=8.6e-19 Score=183.61 Aligned_cols=217 Identities=20% Similarity=0.155 Sum_probs=137.5
Q ss_pred hhHHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHHhcCCCCccccc
Q psy760 267 SAKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLN 346 (511)
Q Consensus 267 ~~~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~~SGIGp~~~L~ 346 (511)
.....+...+++.|+++++++.|++|..++ + ...|+. +++ ++.++ .||+|+|+...|++ -.+|-|.. .++
T Consensus 106 ~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~--~-~~~v~~--~~~--~i~ad-~VIlAtG~~s~p~~-gs~G~g~~-la~ 175 (400)
T TIGR00275 106 DVLDALLNELKELGVEILTNSKVKSIKKDD--N-GFGVET--SGG--EYEAD-KVILATGGLSYPQL-GSTGDGYE-IAE 175 (400)
T ss_pred HHHHHHHHHHHHCCCEEEeCCEEEEEEecC--C-eEEEEE--CCc--EEEcC-EEEECCCCcccCCC-CCCcHHHH-HHH
Confidence 344455566677899999999999997654 2 233443 333 57887 69999999766642 11222111 245
Q ss_pred cCCCCccccCc--cchhhhhcccCceEEEEEcCCC-CcchhhhhcchHHHHHhHHhcCCCCcccCccccee---eeehhc
Q psy760 347 DLNIPVIKNLR--VGENLQEHLAMAGLTFLVNQPI-GLLQDRLIKEMPVHFAGKLRHSLSPITNSETLSTN---IKTIFA 420 (511)
Q Consensus 347 ~~gi~vv~~~P--VG~nl~DH~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Gpl~~~~~~~~~---~~~~~~ 420 (511)
++|++++...| |...+.++... .+.+...+.. .....+.. .....|.+..+|.+.+| +++|.+
T Consensus 176 ~lG~~i~~~~P~l~~l~~~~~~~~-~l~Gv~~~~~~~~~~~~~~----------~~~~~g~llft~~gisG~~vl~~s~~ 244 (400)
T TIGR00275 176 SLGHTIVPPVPALVPLTLDESFLK-ELSGISLDGVVLSLVNGKK----------VLEEFGDLLFTHFGLSGPAILDLSAF 244 (400)
T ss_pred HCCCCEecccceEeEEEeCCcccc-cCCCCcCccEEEEecCCcE----------EEeecccEEEECCCcCHHHHHHHHHH
Confidence 67887776666 55555554221 1221111110 00000000 13567999999999998 677765
Q ss_pred cchhhhhccCCCeEEEEecCcceeEEEeccCCCCCCCceEEEecC--CCchhHHH---HHhhccccccccceeeee----
Q psy760 421 AHHDKINKSGEDITIRLIKDLIGILIALALPRKFSTWGKFQVSSS--FVVPVWFW---LVQNGCQMSGKWSNLYWY---- 491 (511)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~~~---~~~~~~~~~~~~~~~~~~---- 491 (511)
.++.+....+..|.|+|.++.+.+++...|++.+...+++.+.+. .-+|.+|| +.+.||+.+++|++|..-
T Consensus 245 ~~~~~~~~~~~~~~id~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (400)
T TIGR00275 245 AARALLKHKGVELEIDLLPDLSEEELEQRLKRLRKSNPKKTVKNILKGLLPKRLAELLLEQLGIDPDLPAAQLSKKEIKK 324 (400)
T ss_pred HHHHhhcCCCcEEEEEcCCCCCHHHHHHHHHHHHHHChhhhHHHHhhhhhhHHHHHHHHHHcCCCCCCChHHCCHHHHHH
Confidence 555543334678999999997666777777776666688888776 34999999 888999999999998741
Q ss_pred ----ecceEEecccccc
Q psy760 492 ----TDGFEVDLSGSFG 504 (511)
Q Consensus 492 ----~~~~~~~~~~~~~ 504 (511)
.-.|.+...|..|
T Consensus 325 l~~~lk~~~~~~~g~~~ 341 (400)
T TIGR00275 325 LVQLLKNWPFTVSGTRG 341 (400)
T ss_pred HHHHHhCCEEEecCcCc
Confidence 2345555555444
No 11
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.61 E-value=1.9e-14 Score=155.33 Aligned_cols=60 Identities=23% Similarity=0.283 Sum_probs=47.3
Q ss_pred HhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECC-eEEEEEeCcEEEEccCCCCcHH
Q psy760 270 DYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKG-IDHKILARKEVILSAGAFNSPK 332 (511)
Q Consensus 270 ~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g-~~~~v~A~k~VILAAGa~~SP~ 332 (511)
..|...+++.|++|+++++|++|+.++ ++++||++...+ +..+++|+ .||+|+|++..+.
T Consensus 194 ~~L~~~~~~~gv~i~~~t~v~~l~~~~--g~V~Gv~~~~~~g~~~~i~a~-~VVlAtGG~~~n~ 254 (506)
T PRK06481 194 DGLLKNVQERKIPLFVNADVTKITEKD--GKVTGVKVKINGKETKTISSK-AVVVTTGGFGANK 254 (506)
T ss_pred HHHHHHHHHcCCeEEeCCeeEEEEecC--CEEEEEEEEeCCCeEEEEecC-eEEEeCCCcccCH
Confidence 344455677899999999999998654 789999887543 55678996 7999999987654
No 12
>PRK07121 hypothetical protein; Validated
Probab=99.57 E-value=4.8e-14 Score=151.90 Aligned_cols=66 Identities=23% Similarity=0.304 Sum_probs=52.6
Q ss_pred hHHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHH
Q psy760 268 AKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLL 334 (511)
Q Consensus 268 ~~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL 334 (511)
....|...+++.|++|+++++|++|+.+++ ++++||++..+++.+.++|+|.||||+|++...+-|
T Consensus 179 ~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~-g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~~N~em 244 (492)
T PRK07121 179 LMDPLAKRAAALGVQIRYDTRATRLIVDDD-GRVVGVEARRYGETVAIRARKGVVLAAGGFAMNREM 244 (492)
T ss_pred HHHHHHHHHHhCCCEEEeCCEEEEEEECCC-CCEEEEEEEeCCcEEEEEeCCEEEECCCCcCcCHHH
Confidence 344555566788999999999999998753 789999988766677899955899999999765433
No 13
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.57 E-value=5.2e-14 Score=153.25 Aligned_cols=60 Identities=18% Similarity=0.285 Sum_probs=50.4
Q ss_pred hhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHH
Q psy760 271 YIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPK 332 (511)
Q Consensus 271 ~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~ 332 (511)
.|...+++.|++|+++++|++|+.++ ++|+||.+..+++++.+.|+|.||||+|+|....
T Consensus 222 ~L~~~~~~~Gv~i~~~t~v~~Li~~~--g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~~n~ 281 (564)
T PRK12845 222 GLFAGVLRAGIPIWTETSLVRLTDDG--GRVTGAVVDHRGREVTVTARRGVVLAAGGFDHDM 281 (564)
T ss_pred HHHHHHHHCCCEEEecCEeeEEEecC--CEEEEEEEEECCcEEEEEcCCEEEEecCCccccH
Confidence 44455677899999999999999754 7999998877777778889889999999998765
No 14
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.56 E-value=7.3e-14 Score=152.93 Aligned_cols=63 Identities=22% Similarity=0.299 Sum_probs=53.0
Q ss_pred HHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHH
Q psy760 269 KDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPK 332 (511)
Q Consensus 269 ~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~ 332 (511)
...|...+++.|++|++++.|++|+.+++ ++|+||.+..+++.+.++|+|.||||||+|....
T Consensus 216 ~~~l~~~~~~~gv~i~~~~~~~~Li~d~~-g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~~N~ 278 (584)
T PRK12835 216 VARLRLALKDAGVPLWLDSPMTELITDPD-GAVVGAVVEREGRTLRIGARRGVILATGGFDHDM 278 (584)
T ss_pred HHHHHHHHHhCCceEEeCCEEEEEEECCC-CcEEEEEEEeCCcEEEEEeceeEEEecCcccCCH
Confidence 33455667788999999999999999754 7999999987777788999878999999998754
No 15
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.53 E-value=1.1e-13 Score=150.90 Aligned_cols=63 Identities=16% Similarity=0.275 Sum_probs=52.6
Q ss_pred HHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHH
Q psy760 269 KDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKL 333 (511)
Q Consensus 269 ~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~L 333 (511)
...|...+++.|++|+++++|++|+.++ ++|+||++..+++.+.++|+|.||||||++...+=
T Consensus 211 ~~~l~~~~~~~gv~i~~~~~v~~Li~~~--g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~~N~e 273 (557)
T PRK12844 211 IGRMLEAALAAGVPLWTNTPLTELIVED--GRVVGVVVVRDGREVLIRARRGVLLASGGFGHNAE 273 (557)
T ss_pred HHHHHHHHHhCCCEEEeCCEEEEEEEeC--CEEEEEEEEECCeEEEEEecceEEEecCCccCCHH
Confidence 3345455678899999999999999875 79999999877777789997789999999988653
No 16
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=99.52 E-value=2.6e-13 Score=146.81 Aligned_cols=63 Identities=16% Similarity=0.377 Sum_probs=50.8
Q ss_pred hhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHH-HHH
Q psy760 271 YIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPK-LLM 335 (511)
Q Consensus 271 ~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~-LL~ 335 (511)
++..+.++.|++|+++++|++|+.++ ++|+||++..+++.+.|+|+|.||||||++...+ ++.
T Consensus 179 l~~~~~~~~gv~i~~~t~~~~Li~~~--g~v~Gv~~~~~g~~~~i~A~k~VIlAtGG~~~n~~m~~ 242 (513)
T PRK12837 179 FLAALARFPNARLRLNTPLVELVVED--GRVVGAVVERGGERRRVRARRGVLLAAGGFEQNDDMRA 242 (513)
T ss_pred HHHHHHhCCCCEEEeCCEEEEEEecC--CEEEEEEEEECCcEEEEEeCceEEEeCCCccCCHHHHH
Confidence 34444455699999999999999875 7999999887777788999878999999997554 443
No 17
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.51 E-value=9.4e-14 Score=146.48 Aligned_cols=62 Identities=23% Similarity=0.400 Sum_probs=48.4
Q ss_pred HHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEE--ECCeEEEEEeCcEEEEccCCCCcHHHH
Q psy760 269 KDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLAT--IKGIDHKILARKEVILSAGAFNSPKLL 334 (511)
Q Consensus 269 ~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~--~~g~~~~v~A~k~VILAAGa~~SP~LL 334 (511)
...|...+++.|++|+.+++|++|+.++ ++|+||++. .+++.++|+|+ .||||+|++.. .++
T Consensus 144 ~~~l~~~~~~~gv~i~~~~~~~~Li~e~--g~V~Gv~~~~~~~g~~~~i~A~-aVIlAtGG~~~-~~~ 207 (417)
T PF00890_consen 144 IEALAKAAEEAGVDIRFNTRVTDLITED--GRVTGVVAENPADGEFVRIKAK-AVILATGGFGG-ELL 207 (417)
T ss_dssp HHHHHHHHHHTTEEEEESEEEEEEEEET--TEEEEEEEEETTTCEEEEEEES-EEEE----BGG-HHH
T ss_pred HHHHHHHHhhcCeeeeccceeeeEEEeC--CceeEEEEEECCCCeEEEEeee-EEEeccCcccc-ccc
Confidence 3345555677899999999999999986 799999999 67888899997 89999999988 444
No 18
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.51 E-value=1.8e-13 Score=146.60 Aligned_cols=70 Identities=21% Similarity=0.304 Sum_probs=53.9
Q ss_pred HHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEE-ECCeEEEEEeCcEEEEccCCCCcHHHHHhcCCCC
Q psy760 269 KDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLAT-IKGIDHKILARKEVILSAGAFNSPKLLMLSGIGP 341 (511)
Q Consensus 269 ~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~-~~g~~~~v~A~k~VILAAGa~~SP~LL~~SGIGp 341 (511)
...|...+++.|++|+++++|++|+.++ ++++||++. .+++...++|+ .||||+|++.+++.++..-.++
T Consensus 134 ~~~l~~~~~~~gv~i~~~t~v~~l~~~~--g~v~gv~~~~~~g~~~~i~a~-~VIlAtGg~~~n~~~~~~~~~~ 204 (466)
T PRK08274 134 VNALYRSAERLGVEIRYDAPVTALELDD--GRFVGARAGSAAGGAERIRAK-AVVLAAGGFESNREWLREAWGQ 204 (466)
T ss_pred HHHHHHHHHHCCCEEEcCCEEEEEEecC--CeEEEEEEEccCCceEEEECC-EEEECCCCCCCCHHHHHhhcCC
Confidence 3345555677899999999999999865 789999885 44555678896 7999999998887666654443
No 19
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=99.44 E-value=9.8e-13 Score=145.03 Aligned_cols=59 Identities=20% Similarity=0.273 Sum_probs=46.9
Q ss_pred hhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEE--CCeEEEEEeCcEEEEccCCCCcH
Q psy760 271 YIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNSP 331 (511)
Q Consensus 271 ~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~--~g~~~~v~A~k~VILAAGa~~SP 331 (511)
.|...+.+.|++|+.++.|++|+.+++ ++|+||.+.. +++...+.|+ .||||+|++...
T Consensus 192 ~L~~~a~~~gv~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~g~~ 252 (635)
T PLN00128 192 TLYGQAMKHNTQFFVEYFALDLIMDSD-GACQGVIALNMEDGTLHRFRAH-STILATGGYGRA 252 (635)
T ss_pred HHHHHHHhCCCEEEEeeEEEEEEEcCC-CEEEEEEEEEcCCCeEEEEEcC-eEEECCCCCccc
Confidence 444445567999999999999998743 7999998753 5667788896 899999998753
No 20
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.43 E-value=4.9e-12 Score=137.79 Aligned_cols=200 Identities=18% Similarity=0.177 Sum_probs=112.4
Q ss_pred CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCCcccccccccccccCCCCcCCCccccccccccccCCCCcccc
Q psy760 68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLVDIPVLNTNLILSPLNWGYKTEKEDCRACLGLKGQRCPW 147 (511)
Q Consensus 68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~~~~~ip~~~~~~~~~~~~w~~~t~p~~~~~~~~~~~~~~~~ 147 (511)
.+|||||||||+.|+++|+.||+ .|.+|+||||+....
T Consensus 5 ~~~DVvIIGGGi~G~~iA~~La~-rG~~V~LlEk~d~~~----------------------------------------- 42 (546)
T PRK11101 5 QETDVIIIGGGATGAGIARDCAL-RGLRCILVERHDIAT----------------------------------------- 42 (546)
T ss_pred ccccEEEECcCHHHHHHHHHHHH-cCCeEEEEECCCCCC-----------------------------------------
Confidence 36999999999999999999999 899999999974321
Q ss_pred CCcceecccccccccccccCCc---ccchHHhhcCCCCCChhchHHHHHHHHhhhcccccCCCCCCCCcccccccCCCCC
Q psy760 148 PSGKGVGGTSLINTMLYTRGNK---RNYDDWAKLGNYGWSYNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTEYNT 224 (511)
Q Consensus 148 ~rGk~lGGsS~~n~~~~~r~~~---~d~~~w~~~g~~~w~~~~l~~y~~k~e~~~~~~~~~~~~~g~~G~l~v~~~~~~~ 224 (511)
|+|..|.++...+.. .+....... .++ ...+.+.... . ++.. |.+.+..+....
T Consensus 43 -------GaS~~~~gllh~g~ry~~~~~~~~~~~------~~e-~~~l~~~a~~-------~-~~~~-g~l~~~~~~~~~ 99 (546)
T PRK11101 43 -------GATGRNHGLLHSGARYAVTDAESAREC------ISE-NQILKRIARH-------C-VEPT-DGLFITLPEDDL 99 (546)
T ss_pred -------CcccccccceeccchhcccCHHHHHHH------HHH-HHHHHHhchH-------h-hccc-CCceEEeccccH
Confidence 233333333221111 111110000 000 0111111100 0 1112 224444433333
Q ss_pred hHHHHHHHHHHHcCCCCCCCC-----------CCCccceeecccccCCCcccchhHHhhHhhhhCCCcEEEeCceEEEEE
Q psy760 225 PMLDAFLQAGMEAGYPLVDYN-----------GKTQTGFARAQATLHKRSRRSSAKDYIDPIKKRCNLTVKDSSFVKKIL 293 (511)
Q Consensus 225 ~~~~~~~~a~~~~G~~~~~~~-----------~~~~~G~~~~~~~~~~g~r~~~~~~~L~~~~~r~gv~v~~~t~V~~I~ 293 (511)
.....+.+.+.+.|++...++ .....|..+++...- ........+...+.+.|++++++++|++|.
T Consensus 100 ~~~~~~~~~~~~~Gi~~~~l~~~e~~~~eP~l~~~~~ga~~~~dg~v---dp~rl~~al~~~A~~~Ga~i~~~t~V~~i~ 176 (546)
T PRK11101 100 AFQATFIRACEEAGIEAEAIDPQQALILEPAVNPALIGAVKVPDGTV---DPFRLTAANMLDAKEHGAQILTYHEVTGLI 176 (546)
T ss_pred HHHHHHHHHHHHcCCCcEEECHHHHHHhCCCcCccceEEEEecCcEE---CHHHHHHHHHHHHHhCCCEEEeccEEEEEE
Confidence 445566677778887642111 112233333332111 111111122234567899999999999998
Q ss_pred EcCCCCcEEEEEEEE--CCeEEEEEeCcEEEEccCCCCcHHHHHhcCC
Q psy760 294 IDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNSPKLLMLSGI 339 (511)
Q Consensus 294 ~d~~~~ra~GV~~~~--~g~~~~v~A~k~VILAAGa~~SP~LL~~SGI 339 (511)
.++ ++++||++.+ +++..+|+|+ .||+|||+ ++.+++.+.|+
T Consensus 177 ~~~--~~v~gv~v~d~~~g~~~~i~A~-~VVnAaG~-wa~~l~~~~g~ 220 (546)
T PRK11101 177 REG--DTVCGVRVRDHLTGETQEIHAP-VVVNAAGI-WGQHIAEYADL 220 (546)
T ss_pred EcC--CeEEEEEEEEcCCCcEEEEECC-EEEECCCh-hHHHHHHhcCC
Confidence 875 6899998864 3444589997 69999997 58888877664
No 21
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.43 E-value=2.2e-13 Score=139.40 Aligned_cols=199 Identities=23% Similarity=0.259 Sum_probs=110.5
Q ss_pred cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCCcccccccccccccCCCCcCCCccccccccccccCCCCccccCCc
Q psy760 71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLVDIPVLNTNLILSPLNWGYKTEKEDCRACLGLKGQRCPWPSG 150 (511)
Q Consensus 71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~~~~~ip~~~~~~~~~~~~w~~~t~p~~~~~~~~~~~~~~~~~rG 150 (511)
||||||||++|+++|++|++ .|++|+|||++....
T Consensus 1 DvvIIGaGi~G~~~A~~La~-~G~~V~l~e~~~~~~-------------------------------------------- 35 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELAR-RGHSVTLLERGDIGS-------------------------------------------- 35 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHH-TTSEEEEEESSSTTS--------------------------------------------
T ss_pred CEEEECcCHHHHHHHHHHHH-CCCeEEEEeeccccc--------------------------------------------
Confidence 89999999999999999999 899999999994211
Q ss_pred ceecccccccccccccCC--cccchHHhhcCCCCCChhchHHHHHHHHhhhcccccCCCCCCCCcccccccCCCCChHHH
Q psy760 151 KGVGGTSLINTMLYTRGN--KRNYDDWAKLGNYGWSYNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTEYNTPMLD 228 (511)
Q Consensus 151 k~lGGsS~~n~~~~~r~~--~~d~~~w~~~g~~~w~~~~l~~y~~k~e~~~~~~~~~~~~~g~~G~l~v~~~~~~~~~~~ 228 (511)
|+|..+++++.... ..+ ..+.++ ......++++....... ...++ ..|.+.+...+......+
T Consensus 36 ----~aS~~~~g~~~~~~~~~~~-~~~~~l------~~~~~~~~~~~~~~~~~---~~~~~-~~g~l~~~~~~~~~~~~~ 100 (358)
T PF01266_consen 36 ----GASGRSGGLVRPGISSYPD-PQYARL------ARESVEFWRELAEEYGI---PVGFR-PCGSLYLAEDEEDAESLE 100 (358)
T ss_dssp ----SGGGSSSEEEECSGSHHSS-HHHHHH------HHHHHHHHHHHHHHTTS---SCEEE-ECEEEEEESSHHHHHHHH
T ss_pred ----ccccccccccccccccccc-ccccch------hhhhccchhhhhhhcCc---ccccc-cccccccccchhhhhhcc
Confidence 33333433443331 111 011110 01122233333222211 11111 234455544333334455
Q ss_pred HHHHHHHHcCCCCCCCC-----------CCCccceeecccccCCCcccchhHHhhHhhhhCCCcEEEeCceEEEEEEcCC
Q psy760 229 AFLQAGMEAGYPLVDYN-----------GKTQTGFARAQATLHKRSRRSSAKDYIDPIKKRCNLTVKDSSFVKKILIDPV 297 (511)
Q Consensus 229 ~~~~a~~~~G~~~~~~~-----------~~~~~G~~~~~~~~~~g~r~~~~~~~L~~~~~r~gv~v~~~t~V~~I~~d~~ 297 (511)
.+.+.++..|++..... .....+..+.+.... .........|...+++.|++|+++++|++|..++
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~g~--i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~- 177 (358)
T PF01266_consen 101 RLLDRLRRNGIPYELLSPEELRELFPFLNPRIEGGVFFPEGGV--IDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDG- 177 (358)
T ss_dssp HHHHHHHHTTTTEEEEEHHHHHHHSTTSSTTTEEEEEETTEEE--EEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEET-
T ss_pred ccccccccccccccccchhhhhhhhcccccchhhhhccccccc--ccccchhhhhHHHHHHhhhhccccccccchhhcc-
Confidence 66777778887432111 011111111111100 1123334455556677899999999999999987
Q ss_pred CCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHHhcCC
Q psy760 298 TKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGI 339 (511)
Q Consensus 298 ~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~~SGI 339 (511)
++++||++. +. .++|+ .||+|+|+ ++++|+...|+
T Consensus 178 -~~v~gv~~~--~g--~i~ad-~vV~a~G~-~s~~l~~~~~~ 212 (358)
T PF01266_consen 178 -GRVTGVRTS--DG--EIRAD-RVVLAAGA-WSPQLLPLLGL 212 (358)
T ss_dssp -TEEEEEEET--TE--EEEEC-EEEE--GG-GHHHHHHTTTT
T ss_pred -ccccccccc--cc--ccccc-eeEecccc-cceeeeecccc
Confidence 677777753 22 48897 69999996 78888888765
No 22
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.42 E-value=4.8e-12 Score=138.20 Aligned_cols=64 Identities=22% Similarity=0.289 Sum_probs=52.5
Q ss_pred HhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHH
Q psy760 270 DYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLM 335 (511)
Q Consensus 270 ~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~ 335 (511)
..|...+++.|++|++++.|++|+.++ ++|+||++..+++.+.++|++.||||+|++.+.+-|+
T Consensus 212 ~~L~~~~~~~gv~v~~~t~v~~l~~~~--g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~n~~m~ 275 (557)
T PRK07843 212 AGLRIGLQRAGVPVLLNTPLTDLYVED--GRVTGVHAAESGEPQLIRARRGVILASGGFEHNEQMR 275 (557)
T ss_pred HHHHHHHHcCCCEEEeCCEEEEEEEeC--CEEEEEEEEeCCcEEEEEeceeEEEccCCcCcCHHHH
Confidence 344455677899999999999999875 7999999876777778999768999999998866443
No 23
>PRK07395 L-aspartate oxidase; Provisional
Probab=99.42 E-value=1.7e-12 Score=141.30 Aligned_cols=58 Identities=19% Similarity=0.261 Sum_probs=45.6
Q ss_pred hhHhhh-hCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCC
Q psy760 271 YIDPIK-KRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFN 329 (511)
Q Consensus 271 ~L~~~~-~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~ 329 (511)
.|...+ ++.|++|++++.|++|+.++++++|+||.+..+++.+.++|+ .||||||++.
T Consensus 139 ~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~Ak-aVILATGG~~ 197 (553)
T PRK07395 139 TLTEQVLQRPNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRAG-AVILATGGGG 197 (553)
T ss_pred HHHHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEcC-EEEEcCCCCc
Confidence 344434 356999999999999998753378999988777776678885 7999999974
No 24
>PRK06175 L-aspartate oxidase; Provisional
Probab=99.42 E-value=2.6e-12 Score=136.11 Aligned_cols=57 Identities=18% Similarity=0.315 Sum_probs=44.4
Q ss_pred hhHhhh-hCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCc
Q psy760 271 YIDPIK-KRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNS 330 (511)
Q Consensus 271 ~L~~~~-~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~S 330 (511)
.|...+ ++.|++|++++.|++|+.++ ++++||....+++.+.++|+ .||||+|++..
T Consensus 133 ~L~~~~~~~~gV~i~~~t~v~~Li~~~--~~v~Gv~~~~~g~~~~i~Ak-~VILAtGG~~~ 190 (433)
T PRK06175 133 ILLKKVKKRKNITIIENCYLVDIIEND--NTCIGAICLKDNKQINIYSK-VTILATGGIGG 190 (433)
T ss_pred HHHHHHHhcCCCEEEECcEeeeeEecC--CEEEEEEEEECCcEEEEEcC-eEEEccCcccc
Confidence 343333 45699999999999998765 78999877666665678996 79999999764
No 25
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.41 E-value=1.6e-12 Score=142.19 Aligned_cols=56 Identities=18% Similarity=0.231 Sum_probs=45.4
Q ss_pred hhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEE--CCeEEEEEeCcEEEEccCCCC
Q psy760 271 YIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFN 329 (511)
Q Consensus 271 ~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~--~g~~~~v~A~k~VILAAGa~~ 329 (511)
.|...+.+.|++|++++.|++|+.++ ++|+||.+.. +++.+.++|+ .||||||++.
T Consensus 141 ~L~~~~~~~gv~i~~~~~~~~Li~~~--g~v~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~ 198 (566)
T PRK06452 141 TLFERTSGLNVDFYNEWFSLDLVTDN--KKVVGIVAMQMKTLTPFFFKTK-AVVLATGGMG 198 (566)
T ss_pred HHHHHHHhCCCEEEeCcEEEEEEEEC--CEEEEEEEEECCCCeEEEEEeC-eEEECCCccc
Confidence 44444556799999999999999875 8999998874 4556688895 8999999987
No 26
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.40 E-value=1.8e-12 Score=142.23 Aligned_cols=60 Identities=13% Similarity=0.105 Sum_probs=47.2
Q ss_pred HHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEE--ECCeEEEEEeCcEEEEccCCCCc
Q psy760 269 KDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLAT--IKGIDHKILARKEVILSAGAFNS 330 (511)
Q Consensus 269 ~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~--~~g~~~~v~A~k~VILAAGa~~S 330 (511)
...|...+.+.|++|++++.|++|+.+++ ++|+||... .+++.+.++|+ .||||||++..
T Consensus 146 ~~~L~~~~~~~gi~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~~~ 207 (588)
T PRK08958 146 LHTLYQQNLKNHTTIFSEWYALDLVKNQD-GAVVGCTAICIETGEVVYFKAR-ATVLATGGAGR 207 (588)
T ss_pred HHHHHHHhhhcCCEEEeCcEEEEEEECCC-CEEEEEEEEEcCCCcEEEEEcC-eEEECCCCccc
Confidence 33444445678999999999999998643 799999874 35666788995 89999999864
No 27
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.40 E-value=7.5e-12 Score=133.01 Aligned_cols=63 Identities=22% Similarity=0.204 Sum_probs=48.0
Q ss_pred hHHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEEC-CeEEEEEeCcEEEEccCCCCcHH
Q psy760 268 AKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIK-GIDHKILARKEVILSAGAFNSPK 332 (511)
Q Consensus 268 ~~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~-g~~~~v~A~k~VILAAGa~~SP~ 332 (511)
....|...+++.|++|+++++|++|+.+++ ++++||++... ++...+.++ .||+|+|++....
T Consensus 132 l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~-g~v~Gv~~~~~~g~~~~~~a~-~VVlAtGg~~~n~ 195 (439)
T TIGR01813 132 IVQKLYKKAKKEGIDTRLNSKVEDLIQDDQ-GTVVGVVVKGKGKGIYIKAAK-AVVLATGGFGSNK 195 (439)
T ss_pred HHHHHHHHHHHcCCEEEeCCEeeEeEECCC-CcEEEEEEEeCCCeEEEEecc-eEEEecCCCCCCH
Confidence 344555567788999999999999998653 78999988754 334456675 7999999987643
No 28
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=99.39 E-value=7.4e-12 Score=137.36 Aligned_cols=62 Identities=21% Similarity=0.278 Sum_probs=50.4
Q ss_pred hhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHH
Q psy760 271 YIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLL 334 (511)
Q Consensus 271 ~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL 334 (511)
.|...+++.|++|+++++|++|+.++ ++++||++..+++.+.++|+|.||||+|++....-+
T Consensus 222 ~L~~~a~~~Gv~i~~~t~v~~l~~~~--g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~~n~~~ 283 (581)
T PRK06134 222 RLLKSAEDLGVRIWESAPARELLRED--GRVAGAVVETPGGLQEIRARKGVVLAAGGFPHDPAR 283 (581)
T ss_pred HHHHHHHhCCCEEEcCCEEEEEEEeC--CEEEEEEEEECCcEEEEEeCCEEEEcCCCcccCHHH
Confidence 45556778899999999999999875 799999987666666789955899999999775544
No 29
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.39 E-value=3.1e-12 Score=141.39 Aligned_cols=56 Identities=14% Similarity=0.235 Sum_probs=45.7
Q ss_pred hHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEE--CCeEEEEEeCcEEEEccCCCCc
Q psy760 272 IDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNS 330 (511)
Q Consensus 272 L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~--~g~~~~v~A~k~VILAAGa~~S 330 (511)
|...+++.|++|++++.|++|+.++ ++|+||.+.. +++.+.+.|+ .||||||++..
T Consensus 176 L~~~~~~~gV~i~~~t~v~~Li~d~--g~V~GV~~~~~~~g~~~~i~Ak-aVVLATGG~g~ 233 (640)
T PRK07573 176 LSRQIAAGTVKMYTRTEMLDLVVVD--GRARGIVARNLVTGEIERHTAD-AVVLATGGYGN 233 (640)
T ss_pred HHHHHHhcCCEEEeceEEEEEEEeC--CEEEEEEEEECCCCcEEEEECC-EEEECCCCccc
Confidence 3334567899999999999999875 7999998874 4565678886 79999999875
No 30
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.38 E-value=7.3e-12 Score=136.27 Aligned_cols=60 Identities=17% Similarity=0.251 Sum_probs=45.9
Q ss_pred hHHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEE-----ECCeEEEEEeCcEEEEccCCCC
Q psy760 268 AKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLAT-----IKGIDHKILARKEVILSAGAFN 329 (511)
Q Consensus 268 ~~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~-----~~g~~~~v~A~k~VILAAGa~~ 329 (511)
....|...+++.|++|+.++.|++|+.+++ ++|+||.+. ..+....++|+ .||+|+|++.
T Consensus 146 i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~-g~v~Gv~~~~~~~~~~~g~~~i~Ak-~VIlATGG~~ 210 (541)
T PRK07804 146 VQRALDAAVRADPLDIREHALALDLLTDGT-GAVAGVTLHVLGEGSPDGVGAVHAP-AVVLATGGLG 210 (541)
T ss_pred HHHHHHHHHHhCCCEEEECeEeeeeEEcCC-CeEEEEEEEeccCCCCCcEEEEEcC-eEEECCCCCC
Confidence 334555566677899999999999998753 689999876 22334578885 7999999976
No 31
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=99.37 E-value=1e-11 Score=136.15 Aligned_cols=63 Identities=19% Similarity=0.241 Sum_probs=51.5
Q ss_pred HHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHH
Q psy760 269 KDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKL 333 (511)
Q Consensus 269 ~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~L 333 (511)
...|...+++.|++|++++.|++|+.++ ++|+||++..+++...+.|+|.||||+|++...+=
T Consensus 224 ~~aL~~~~~~~Gv~i~~~t~v~~Li~~~--g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~n~e 286 (578)
T PRK12843 224 IGRLLYSLRARGVRILTQTDVESLETDH--GRVIGATVVQGGVRRRIRARGGVVLATGGFNRHPQ 286 (578)
T ss_pred HHHHHHHHHhCCCEEEeCCEEEEEEeeC--CEEEEEEEecCCeEEEEEccceEEECCCCcccCHH
Confidence 3345556678899999999999998764 79999998877777788886689999999988643
No 32
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.37 E-value=7.2e-12 Score=137.75 Aligned_cols=60 Identities=20% Similarity=0.223 Sum_probs=47.6
Q ss_pred HHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEE--ECCeEEEEEeCcEEEEccCCCCc
Q psy760 269 KDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLAT--IKGIDHKILARKEVILSAGAFNS 330 (511)
Q Consensus 269 ~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~--~~g~~~~v~A~k~VILAAGa~~S 330 (511)
...|...+++.|++|++++.|++|+.+++ ++|+||.+. .+++.+.+.|+ .||||||++..
T Consensus 152 ~~~L~~~~~~~gi~i~~~~~v~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~~ 213 (598)
T PRK09078 152 LHTLYQQSLKHNAEFFIEYFALDLIMDDG-GVCRGVVAWNLDDGTLHRFRAH-MVVLATGGYGR 213 (598)
T ss_pred HHHHHHHHhhcCCEEEEeEEEEEEEEcCC-CEEEEEEEEECCCCcEEEEEcC-EEEECCCCCcc
Confidence 33454556678999999999999998753 689999875 35666788995 79999999875
No 33
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=99.37 E-value=1.3e-11 Score=134.75 Aligned_cols=36 Identities=33% Similarity=0.582 Sum_probs=33.9
Q ss_pred CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
..++||||||+|.||+++|+.+++ .|.+|+||||++
T Consensus 2 ~~~~DVvVVG~G~AGl~AAl~Aa~-~G~~VivlEK~~ 37 (549)
T PRK12834 2 AMDADVIVVGAGLAGLVAAAELAD-AGKRVLLLDQEN 37 (549)
T ss_pred CccCCEEEECcCHHHHHHHHHHHH-CCCeEEEEeCCC
Confidence 457999999999999999999999 899999999986
No 34
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.36 E-value=1.2e-11 Score=145.33 Aligned_cols=53 Identities=25% Similarity=0.355 Sum_probs=43.9
Q ss_pred CCcEEEeCceEEEEEEcCC----C---CcEEEEEEEE----CCeEEEEEeCcEEEEccCCCCcHH
Q psy760 279 CNLTVKDSSFVKKILIDPV----T---KKACGVLATI----KGIDHKILARKEVILSAGAFNSPK 332 (511)
Q Consensus 279 ~gv~v~~~t~V~~I~~d~~----~---~ra~GV~~~~----~g~~~~v~A~k~VILAAGa~~SP~ 332 (511)
.|++|+++++|++|+.+++ + ++|+||++.. +++.+.++|+ .||||||+|....
T Consensus 560 ~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~Ak-aVILATGGf~~N~ 623 (1167)
T PTZ00306 560 GRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLAD-AVILATGGFSNDH 623 (1167)
T ss_pred CCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEEec-eEEEecCCcccCc
Confidence 5999999999999998752 1 3899999875 4666789995 8999999998754
No 35
>PRK12839 hypothetical protein; Provisional
Probab=99.36 E-value=1.1e-11 Score=135.60 Aligned_cols=62 Identities=15% Similarity=0.121 Sum_probs=48.5
Q ss_pred hhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHH
Q psy760 271 YIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKL 333 (511)
Q Consensus 271 ~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~L 333 (511)
.|...+++.|++|++++.|++|+.+++ ++|+||++...+....+.+.|.||||||+|....-
T Consensus 219 ~L~~~a~~~Gv~i~~~t~v~~Li~~~~-g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~~n~~ 280 (572)
T PRK12839 219 RLLRSADDLGVDLRVSTSATSLTTDKN-GRVTGVRVQGPDGAVTVEATRGVVLATGGFPNDVD 280 (572)
T ss_pred HHHHHHHHCCCEEEcCCEEEEEEECCC-CcEEEEEEEeCCCcEEEEeCCEEEEcCCCcccCHH
Confidence 344556778999999999999988643 79999998754444566776689999999987543
No 36
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=99.35 E-value=1.5e-11 Score=134.89 Aligned_cols=61 Identities=16% Similarity=0.283 Sum_probs=48.6
Q ss_pred hHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHH
Q psy760 272 IDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLL 334 (511)
Q Consensus 272 L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL 334 (511)
|...+++.|++|++++.|++|+.++ ++|+||++...+....+.++|.||||+|++....-+
T Consensus 220 L~~~~~~~Gv~i~~~~~v~~l~~~~--g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~~n~~~ 280 (574)
T PRK12842 220 LAKSALDLGIPILTGTPARELLTEG--GRVVGARVIDAGGERRITARRGVVLACGGFSHDLAR 280 (574)
T ss_pred HHHHHHhCCCEEEeCCEEEEEEeeC--CEEEEEEEEcCCceEEEEeCCEEEEcCCCccchHHH
Confidence 4444667899999999999999875 799999987644555788877899999998755443
No 37
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=99.35 E-value=4.2e-12 Score=139.91 Aligned_cols=60 Identities=15% Similarity=0.230 Sum_probs=47.2
Q ss_pred HHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEE--CCeEEEEEeCcEEEEccCCCCc
Q psy760 269 KDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNS 330 (511)
Q Consensus 269 ~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~--~g~~~~v~A~k~VILAAGa~~S 330 (511)
...|...+++.|++|++++.|++|+.+++ ++|+||.+.. +++.+.++|+ .||||+|++..
T Consensus 169 ~~~L~~~a~~~gv~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~~ 230 (617)
T PTZ00139 169 LHTLYGQSLKYDCNFFIEYFALDLIMDED-GECRGVIAMSMEDGSIHRFRAH-YTVIATGGYGR 230 (617)
T ss_pred HHHHHHHHHhCCCEEEeceEEEEEEECCC-CEEEEEEEEECCCCeEEEEECC-cEEEeCCCCcc
Confidence 33455556678999999999999998433 7999998753 5666788896 79999999864
No 38
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.35 E-value=6.7e-12 Score=134.16 Aligned_cols=204 Identities=13% Similarity=0.056 Sum_probs=106.7
Q ss_pred CCcccEEEECCCcHHHHHHHHHhcC-CCCeEEEEcCCCCCCcccccccccccccCCCCcCCCccccccccccccCCCCcc
Q psy760 67 LLEYDFIIVGAGPGGCTVANRLSEI-PHWKILLLEAGHYFNYLVDIPVLNTNLILSPLNWGYKTEKEDCRACLGLKGQRC 145 (511)
Q Consensus 67 ~~~~DvIVVGgG~aGl~aA~~LAe~-~G~~VLVLEaG~~~~~~~~ip~~~~~~~~~~~~w~~~t~p~~~~~~~~~~~~~~ 145 (511)
..++||||||||++|+++|++|++. +|.+|+|||++...
T Consensus 22 ~~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~g---------------------------------------- 61 (460)
T TIGR03329 22 DTQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLCG---------------------------------------- 61 (460)
T ss_pred CceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCccc----------------------------------------
Confidence 3469999999999999999999993 49999999997431
Q ss_pred ccCCcceecccccccccccccCCcccchHHhhc-CCCCC--ChhchHHHHHHHHhhhcccccCCCCCCCCcccccccCCC
Q psy760 146 PWPSGKGVGGTSLINTMLYTRGNKRNYDDWAKL-GNYGW--SYNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTEY 222 (511)
Q Consensus 146 ~~~rGk~lGGsS~~n~~~~~r~~~~d~~~w~~~-g~~~w--~~~~l~~y~~k~e~~~~~~~~~~~~~g~~G~l~v~~~~~ 222 (511)
.|+|..|++...... ..+..+... +.... -+......++..+++......++.+.. .|.+.+...+.
T Consensus 62 --------~GaSgrn~G~~~~~~-~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~l~~~~~i~~~~~~-~G~l~~a~~~~ 131 (460)
T TIGR03329 62 --------AGASGRNGGCMLTWS-TKFFTLKRLFGEAEAARLVKASEQAVLEIAAFCEQHNIDAQLRL-DGTLYTATNPA 131 (460)
T ss_pred --------cccccccCccccccc-cCHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccc-CCEEEEecCHH
Confidence 144444444322111 111111110 10000 000011112222222211122455543 57777665443
Q ss_pred CChHHHHHHHHHHHcCCCC-CCCCCC---------CccceeecccccCCCcccc--hhHHhhHhhhhCCCcEEEeCceEE
Q psy760 223 NTPMLDAFLQAGMEAGYPL-VDYNGK---------TQTGFARAQATLHKRSRRS--SAKDYIDPIKKRCNLTVKDSSFVK 290 (511)
Q Consensus 223 ~~~~~~~~~~a~~~~G~~~-~~~~~~---------~~~G~~~~~~~~~~g~r~~--~~~~~L~~~~~r~gv~v~~~t~V~ 290 (511)
.....+...+.+++.|++. ..++.. ...+..+.+ .+.... .....|...+++.|++|+++++|+
T Consensus 132 ~~~~l~~~~~~~~~~G~~~~~~l~~~e~~~~~~~~~~~~g~~~~----~~g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~ 207 (460)
T TIGR03329 132 QVGSMDPVVDALERRGINSWQRLSEGELARRTGSARHLEGFYSP----VAASVQPGLLVRGLRRVALELGVEIHENTPMT 207 (460)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEcCHHHHHHHhCCCcceEEEEeC----CCeEECHHHHHHHHHHHHHHcCCEEECCCeEE
Confidence 4444556667777888752 222211 111111111 111112 222334455678899999999999
Q ss_pred EEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHH
Q psy760 291 KILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLL 334 (511)
Q Consensus 291 ~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL 334 (511)
+|.. + + ...|+. .+| +++|+ .||+|+|++ ++.++
T Consensus 208 ~i~~-~--~-~~~v~t-~~g---~v~A~-~VV~Atga~-s~~l~ 241 (460)
T TIGR03329 208 GLEE-G--Q-PAVVRT-PDG---QVTAD-KVVLALNAW-MASHF 241 (460)
T ss_pred EEee-C--C-ceEEEe-CCc---EEECC-EEEEccccc-ccccC
Confidence 9963 2 2 223432 223 58897 699999985 44444
No 39
>PLN02815 L-aspartate oxidase
Probab=99.34 E-value=1.1e-11 Score=135.59 Aligned_cols=53 Identities=15% Similarity=0.186 Sum_probs=42.0
Q ss_pred hCCCcEEEeCceEEEEEEcCCCC--cEEEEEEEE--CCeEEEEEeCcEEEEccCCCCc
Q psy760 277 KRCNLTVKDSSFVKKILIDPVTK--KACGVLATI--KGIDHKILARKEVILSAGAFNS 330 (511)
Q Consensus 277 ~r~gv~v~~~t~V~~I~~d~~~~--ra~GV~~~~--~g~~~~v~A~k~VILAAGa~~S 330 (511)
++.|++|++++.|++|+.+++++ +|+||.+.. +++.+.+.|+ .||||||++..
T Consensus 167 ~~~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~g~ 223 (594)
T PLN02815 167 NDPNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFISK-VTLLASGGAGH 223 (594)
T ss_pred hcCCCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEec-eEEEcCCccee
Confidence 34699999999999999865433 489998753 5666788895 89999999863
No 40
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.33 E-value=2.4e-11 Score=127.99 Aligned_cols=34 Identities=24% Similarity=0.502 Sum_probs=32.1
Q ss_pred ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760 70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104 (511)
Q Consensus 70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~ 104 (511)
+||||||||++|+++|++|++ .|++|+||||+..
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~-~g~~V~vle~~~~ 35 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQ-RGYQVTVFDRHRY 35 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHH-CCCeEEEEeCCCC
Confidence 699999999999999999999 7999999999864
No 41
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.33 E-value=1.9e-11 Score=128.56 Aligned_cols=62 Identities=18% Similarity=0.156 Sum_probs=44.8
Q ss_pred hHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHHhcCCC
Q psy760 272 IDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIG 340 (511)
Q Consensus 272 L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~~SGIG 340 (511)
|...+.+.|++++.+++|++|..+++ +++++|++.+ + ++.|+ .||+|||++ ++.++...|+.
T Consensus 189 l~~~a~~~Gv~~~~~~~V~~i~~~~~-~~~~~v~t~~-g---~i~a~-~vVvaagg~-~~~l~~~~g~~ 250 (407)
T TIGR01373 189 YARGADRRGVDIIQNCEVTGFIRRDG-GRVIGVETTR-G---FIGAK-KVGVAVAGH-SSVVAAMAGFR 250 (407)
T ss_pred HHHHHHHCCCEEEeCCEEEEEEEcCC-CcEEEEEeCC-c---eEECC-EEEECCChh-hHHHHHHcCCC
Confidence 44556778999999999999976532 5666676532 3 58897 599999985 56677666653
No 42
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.32 E-value=1.2e-11 Score=135.76 Aligned_cols=49 Identities=16% Similarity=0.050 Sum_probs=40.1
Q ss_pred CcEEEeCceEEEEEEcCCCCcEEEEEEEE--CCeEEEEEeCcEEEEccCCCCc
Q psy760 280 NLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNS 330 (511)
Q Consensus 280 gv~v~~~t~V~~I~~d~~~~ra~GV~~~~--~g~~~~v~A~k~VILAAGa~~S 330 (511)
++++++++.|++|+.+++ ++|+||.+.. +++.+.+.|+ .||||||++..
T Consensus 151 ~i~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~~~ 201 (589)
T PRK08641 151 LVTKYEGWEFLGAVLDDE-GVCRGIVAQDLFTMEIESFPAD-AVIMATGGPGI 201 (589)
T ss_pred CcEEEeeEEEEEEEECCC-CEEEEEEEEECCCCcEEEEECC-EEEECCCCCcC
Confidence 489999999999998643 7999998874 4555678885 89999999875
No 43
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.32 E-value=1.7e-11 Score=134.52 Aligned_cols=60 Identities=18% Similarity=0.340 Sum_probs=46.3
Q ss_pred hHHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEE--ECCeEEEEEeCcEEEEccCCCCc
Q psy760 268 AKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLAT--IKGIDHKILARKEVILSAGAFNS 330 (511)
Q Consensus 268 ~~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~--~~g~~~~v~A~k~VILAAGa~~S 330 (511)
....|...+++.|++|++++.|++|+.++ ++|.||... .+++.+.++|+ .||||+|++..
T Consensus 137 i~~~L~~~~~~~gi~i~~~t~v~~L~~~~--g~v~Gv~~~~~~~g~~~~i~Ak-aVVlATGG~~~ 198 (575)
T PRK05945 137 ILHELVNNLRRYGVTIYDEWYVMRLILED--NQAKGVVMYHIADGRLEVVRAK-AVMFATGGYGR 198 (575)
T ss_pred HHHHHHHHHhhCCCEEEeCcEEEEEEEEC--CEEEEEEEEEcCCCeEEEEECC-EEEECCCCCcC
Confidence 33445555667899999999999998875 789999864 25555678895 79999999753
No 44
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.32 E-value=2.4e-11 Score=132.54 Aligned_cols=59 Identities=15% Similarity=0.206 Sum_probs=46.3
Q ss_pred HhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEE--CCeEEEEEeCcEEEEccCCCCc
Q psy760 270 DYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNS 330 (511)
Q Consensus 270 ~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~--~g~~~~v~A~k~VILAAGa~~S 330 (511)
..|...+++.|++|++++.|++|+.+++ ++++||.+.. +++.+.++|+ .||||+|++..
T Consensus 138 ~~L~~~~~~~gv~i~~~t~v~~Li~~~~-~~v~Gv~~~~~~~g~~~~i~Ak-aVIlATGG~~~ 198 (543)
T PRK06263 138 MGLMEYLIKERIKILEEVMAIKLIVDEN-REVIGAIFLDLRNGEIFPIYAK-ATILATGGAGQ 198 (543)
T ss_pred HHHHHHHhcCCCEEEeCeEeeeeEEeCC-cEEEEEEEEECCCCcEEEEEcC-cEEECCCCCCC
Confidence 3454556678999999999999998763 5699998764 5666688995 79999999863
No 45
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=99.32 E-value=1.9e-11 Score=134.04 Aligned_cols=50 Identities=26% Similarity=0.381 Sum_probs=41.2
Q ss_pred CCCcEEEeCceEEEEEEcCCCCcEEEEEEE--ECCeEEEEEeCcEEEEccCCCCc
Q psy760 278 RCNLTVKDSSFVKKILIDPVTKKACGVLAT--IKGIDHKILARKEVILSAGAFNS 330 (511)
Q Consensus 278 r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~--~~g~~~~v~A~k~VILAAGa~~S 330 (511)
..|+++++++.|++|+.++ ++|+||... .+++.+.++|+ .||||+|++..
T Consensus 146 ~~~i~i~~~~~v~~Li~~~--g~v~Gv~~~~~~~g~~~~i~Ak-aVIlATGG~~~ 197 (582)
T PRK09231 146 YPQIQRFDEHFVLDILVDD--GHVRGLVAMNMMEGTLVQIRAN-AVVMATGGAGR 197 (582)
T ss_pred CCCcEEEeCeEEEEEEEeC--CEEEEEEEEEcCCCcEEEEECC-EEEECCCCCcC
Confidence 3589999999999999875 799999874 35656688896 89999999763
No 46
>PLN02661 Putative thiazole synthesis
Probab=99.31 E-value=2.8e-11 Score=122.44 Aligned_cols=68 Identities=26% Similarity=0.345 Sum_probs=48.1
Q ss_pred hccccccccchhhhhhhhccccchhhccccCCCCC-------cc--cCCcccEEEECCCcHHHHHHHHHhcCCCCeEEEE
Q psy760 29 STSLSINVNEFDYAVKSYIEDGIFEQLEYKSSNKD-------QD--LLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLL 99 (511)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~--~~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVL 99 (511)
..+++++..+|+...+.|..-. +...++ +. ...++||+|||+|++|+++|+.|++++|.+|+||
T Consensus 50 ~~~~~~~~~~~~~~~~~f~~~~-------e~~is~~i~~~~~~~l~~~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~vi 122 (357)
T PLN02661 50 RSSSSSSTAPYDLNNFKFAPIK-------ESIVSREMTRRYMTDMITYADTDVVIVGAGSAGLSCAYELSKNPNVKVAII 122 (357)
T ss_pred ccccCCCCCCCccccccceech-------hhHhhccchHhHhhhhhhcccCCEEEECCHHHHHHHHHHHHHcCCCeEEEE
Confidence 3445566777888777773222 222211 11 1236899999999999999999997468999999
Q ss_pred cCCC
Q psy760 100 EAGH 103 (511)
Q Consensus 100 EaG~ 103 (511)
||+.
T Consensus 123 Ek~~ 126 (357)
T PLN02661 123 EQSV 126 (357)
T ss_pred ecCc
Confidence 9974
No 47
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=99.31 E-value=2.3e-11 Score=133.33 Aligned_cols=59 Identities=17% Similarity=0.203 Sum_probs=46.1
Q ss_pred HHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEE--CCeEEEEEeCcEEEEccCCCCc
Q psy760 269 KDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNS 330 (511)
Q Consensus 269 ~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~--~g~~~~v~A~k~VILAAGa~~S 330 (511)
...|...+++.|++++.++.|++|+.++ ++++||.+.. +++...++|+ .||||+|++..
T Consensus 132 ~~~L~~~~~~~gv~i~~~~~v~~L~~~~--g~v~Gv~~~~~~~g~~~~i~Ak-~VVlAtGG~~~ 192 (566)
T TIGR01812 132 LHTLYEQCLKLGVSFFNEYFALDLIHDD--GRVRGVVAYDLKTGEIVFFRAK-AVVLATGGYGR 192 (566)
T ss_pred HHHHHHHHHHcCCEEEeccEEEEEEEeC--CEEEEEEEEECCCCcEEEEECC-eEEECCCcccC
Confidence 3345555566799999999999999875 7999998753 4555678895 89999999753
No 48
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=99.30 E-value=3.2e-11 Score=129.86 Aligned_cols=59 Identities=15% Similarity=0.160 Sum_probs=45.7
Q ss_pred HHhhHhhhhC-CCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCc
Q psy760 269 KDYIDPIKKR-CNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNS 330 (511)
Q Consensus 269 ~~~L~~~~~r-~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~S 330 (511)
...|...+++ .|++|++++.|++|+.++ ++++||.+...++...++|+ .||+|+|++..
T Consensus 131 ~~~L~~~~~~~~gi~i~~~~~v~~l~~~~--g~v~Gv~~~~~~~~~~i~A~-~VVlAtGG~~~ 190 (488)
T TIGR00551 131 ITTLVKKALNHPNIRIIEGENALDLLIET--GRVVGVWVWNRETVETCHAD-AVVLATGGAGK 190 (488)
T ss_pred HHHHHHHHHhcCCcEEEECeEeeeeeccC--CEEEEEEEEECCcEEEEEcC-EEEECCCcccC
Confidence 3345444554 799999999999998765 78999988765555578896 79999999764
No 49
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.30 E-value=6.4e-11 Score=124.08 Aligned_cols=64 Identities=17% Similarity=0.149 Sum_probs=45.6
Q ss_pred HHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHHhcCCCC
Q psy760 269 KDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGP 341 (511)
Q Consensus 269 ~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~~SGIGp 341 (511)
...|...+++.|++++.+++|++|..++ +.+ .|+. ++. +++|+ .||+|+|+ +++.++...|+.+
T Consensus 152 ~~aL~~~~~~~Gv~i~~~~~V~~i~~~~--~~~-~V~~--~~g--~i~ad-~vV~A~G~-~s~~l~~~~g~~~ 215 (393)
T PRK11728 152 AEAMAELIQARGGEIRLGAEVTALDEHA--NGV-VVRT--TQG--EYEAR-TLINCAGL-MSDRLAKMAGLEP 215 (393)
T ss_pred HHHHHHHHHhCCCEEEcCCEEEEEEecC--CeE-EEEE--CCC--EEEeC-EEEECCCc-chHHHHHHhCCCC
Confidence 3344455667899999999999998765 322 3433 333 58897 69999997 6888888877653
No 50
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.29 E-value=4.2e-11 Score=131.53 Aligned_cols=59 Identities=12% Similarity=0.050 Sum_probs=45.8
Q ss_pred HhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEE--CCeEEEEEeCcEEEEccCCCCc
Q psy760 270 DYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNS 330 (511)
Q Consensus 270 ~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~--~g~~~~v~A~k~VILAAGa~~S 330 (511)
..|...+.+.|++++.++.|++|+.+++ ++++||.+.. +++...+.|+ .||||+|++..
T Consensus 152 ~~L~~~~~~~gi~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~~~ 212 (591)
T PRK07057 152 HTLYQQNVAAKTQFFVEWMALDLIRDAD-GDVLGVTALEMETGDVYILEAK-TTLFATGGAGR 212 (591)
T ss_pred HHHHHHHHhcCCEEEeCcEEEEEEEcCC-CeEEEEEEEEcCCCeEEEEECC-eEEECCCCccc
Confidence 3444445678999999999999998643 7899998753 4555678885 79999999864
No 51
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.29 E-value=6.5e-11 Score=122.95 Aligned_cols=205 Identities=19% Similarity=0.186 Sum_probs=118.9
Q ss_pred CcccEEEECCCcHHHHHHHHHhcC-CCCeEEEEcCCCCCCcccccccccccccCCCCcCCCccccccccccccCCCCccc
Q psy760 68 LEYDFIIVGAGPGGCTVANRLSEI-PHWKILLLEAGHYFNYLVDIPVLNTNLILSPLNWGYKTEKEDCRACLGLKGQRCP 146 (511)
Q Consensus 68 ~~~DvIVVGgG~aGl~aA~~LAe~-~G~~VLVLEaG~~~~~~~~ip~~~~~~~~~~~~w~~~t~p~~~~~~~~~~~~~~~ 146 (511)
.+|||+|||||+.|+++|+.|++. +.++|+||||-.....
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~--------------------------------------- 42 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQ--------------------------------------- 42 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCcccc---------------------------------------
Confidence 469999999999999999999994 4499999999865432
Q ss_pred cCCcceecccccccccccccCC---cccchH-HhhcCCCCCChhchHHHHHHHHhhhcccccCCCCCCCCcccccccCCC
Q psy760 147 WPSGKGVGGTSLINTMLYTRGN---KRNYDD-WAKLGNYGWSYNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTEY 222 (511)
Q Consensus 147 ~~rGk~lGGsS~~n~~~~~r~~---~~d~~~-w~~~g~~~w~~~~l~~y~~k~e~~~~~~~~~~~~~g~~G~l~v~~~~~ 222 (511)
++|..|++...-+. +.+... ....|+ ..+|+-..++. -+|... |.+-+...+.
T Consensus 43 --------~sS~~NSgviHag~~y~p~slka~l~~~g~--------~~~~~~~kq~~------~~f~~~-g~l~vA~~e~ 99 (429)
T COG0579 43 --------ESSSNNSGVIHAGLYYTPGSLKAKLCVAGN--------INEFAICKQLG------IPFINC-GKLSVATGEE 99 (429)
T ss_pred --------ccccCcccceeccccCCCcchhhHHHHHHH--------HHHHHHHHHhC------Cccccc-CeEEEEEChH
Confidence 11112221111110 001110 000011 01122222221 113333 7777777777
Q ss_pred CChHHHHHHHHHHHcCCCC-CCCCC-----------CCccceeecccccCCCcccchhHHhhHhhhhCCCcEEEeCceEE
Q psy760 223 NTPMLDAFLQAGMEAGYPL-VDYNG-----------KTQTGFARAQATLHKRSRRSSAKDYIDPIKKRCNLTVKDSSFVK 290 (511)
Q Consensus 223 ~~~~~~~~~~a~~~~G~~~-~~~~~-----------~~~~G~~~~~~~~~~g~r~~~~~~~L~~~~~r~gv~v~~~t~V~ 290 (511)
..+..+.+.+.+.+.|++. ...+. ....+..+.+.+..- ........+...+.+.|++|..|++|+
T Consensus 100 e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV--~~~~~t~~l~e~a~~~g~~i~ln~eV~ 177 (429)
T COG0579 100 EVERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPSGGIV--DPGELTRALAEEAQANGVELRLNTEVT 177 (429)
T ss_pred HHHHHHHHHHHHhhCCCcceeecCHHHHHhhCccccccceeeEEcCCCceE--cHHHHHHHHHHHHHHcCCEEEecCeee
Confidence 7777888888888888872 11111 112222222222111 112223334445667799999999999
Q ss_pred EEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHHhcCCCCc
Q psy760 291 KILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQ 342 (511)
Q Consensus 291 ~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~~SGIGp~ 342 (511)
+|..+++ | ++-+. ..+|++. ++|+ -||.|||. .+..|++++|+.+.
T Consensus 178 ~i~~~~d-g-~~~~~-~~~g~~~-~~ak-~Vin~AGl-~Ad~la~~~g~~~~ 223 (429)
T COG0579 178 GIEKQSD-G-VFVLN-TSNGEET-LEAK-FVINAAGL-YADPLAQMAGIPED 223 (429)
T ss_pred EEEEeCC-c-eEEEE-ecCCcEE-EEee-EEEECCch-hHHHHHHHhCCCcc
Confidence 9998874 2 22222 2345543 8996 69999996 68899999998763
No 52
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=99.29 E-value=2.9e-11 Score=132.35 Aligned_cols=51 Identities=29% Similarity=0.457 Sum_probs=42.1
Q ss_pred hCCCcEEEeCceEEEEEEcCCCCcEEEEEEEE--CCeEEEEEeCcEEEEccCCCCc
Q psy760 277 KRCNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNS 330 (511)
Q Consensus 277 ~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~--~g~~~~v~A~k~VILAAGa~~S 330 (511)
+..|++++.++.|++|+.++ ++|+||.... +++...+.|+ .||||+|++..
T Consensus 144 ~~~~i~i~~~~~v~~Li~~~--g~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~~~ 196 (580)
T TIGR01176 144 TYPQIMRYDEWFVTDLLVDD--GRVCGLVAIEMAEGRLVTILAD-AVVLATGGAGR 196 (580)
T ss_pred hcCCCEEEeCeEEEEEEeeC--CEEEEEEEEEcCCCcEEEEecC-EEEEcCCCCcc
Confidence 34689999999999999875 7999998753 5666688895 89999999764
No 53
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.29 E-value=2.2e-11 Score=133.77 Aligned_cols=62 Identities=18% Similarity=0.211 Sum_probs=47.6
Q ss_pred hHHhhHhhhhCCCcEEEeCceEEEEEEcCC--CCcEEEEEEE--ECCeEEEEEeCcEEEEccCCCCc
Q psy760 268 AKDYIDPIKKRCNLTVKDSSFVKKILIDPV--TKKACGVLAT--IKGIDHKILARKEVILSAGAFNS 330 (511)
Q Consensus 268 ~~~~L~~~~~r~gv~v~~~t~V~~I~~d~~--~~ra~GV~~~--~~g~~~~v~A~k~VILAAGa~~S 330 (511)
....|...+++.|++|++++.|++|+.+++ +++|+||... .+++.+.++|+ .||||+|++..
T Consensus 142 i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~~ 207 (583)
T PRK08205 142 ILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAK-AVVFATGGSGR 207 (583)
T ss_pred HHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeC-eEEECCCCCcc
Confidence 344565556778999999999999998652 2689999875 35555678895 79999999763
No 54
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=99.29 E-value=2.4e-11 Score=134.72 Aligned_cols=57 Identities=16% Similarity=0.300 Sum_probs=46.5
Q ss_pred hhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEE--CCeEEEEEeCcEEEEccCCCCc
Q psy760 271 YIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNS 330 (511)
Q Consensus 271 ~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~--~g~~~~v~A~k~VILAAGa~~S 330 (511)
.|...+.+.|++|+.++.|++|+.++ ++|+||.+.+ +++.+.+.|+ .||||||++..
T Consensus 163 ~L~~~~~~~gv~i~~~~~~~~Li~~~--g~v~Gv~~~~~~~G~~~~i~Ak-aVVLATGG~g~ 221 (657)
T PRK08626 163 AVDNEAIKLGVPVHDRKEAIALIHDG--KRCYGAVVRCLITGELRAYVAK-ATLIATGGYGR 221 (657)
T ss_pred HHHHHHHhCCCEEEeeEEEEEEEEEC--CEEEEEEEEEcCCCcEEEEEcC-eEEECCCcccC
Confidence 34445667899999999999999875 7999998874 5666678895 79999999864
No 55
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.28 E-value=1.7e-11 Score=135.37 Aligned_cols=47 Identities=19% Similarity=0.257 Sum_probs=39.2
Q ss_pred cEEEeCceEEEEEEcCCCCcEEEEEEEE--CCeEEEEEeCcEEEEccCCCCc
Q psy760 281 LTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNS 330 (511)
Q Consensus 281 v~v~~~t~V~~I~~d~~~~ra~GV~~~~--~g~~~~v~A~k~VILAAGa~~S 330 (511)
++|+.++.|++|+.++ ++++||.... +++...++|+ .||||+|++..
T Consensus 166 v~i~~~~~v~~L~~~~--g~v~Gv~~~~~~~g~~~~i~Ak-~VVlATGG~~~ 214 (626)
T PRK07803 166 IKVFAECTITELLKDG--GRIAGAFGYWRESGRFVLFEAP-AVVLATGGIGK 214 (626)
T ss_pred eEEEeCCEEEEEEEEC--CEEEEEEEEECCCCeEEEEEcC-eEEECCCcccC
Confidence 9999999999999875 7899987653 5666678996 79999999764
No 56
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.27 E-value=1e-10 Score=121.73 Aligned_cols=34 Identities=44% Similarity=0.599 Sum_probs=31.8
Q ss_pred ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760 70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104 (511)
Q Consensus 70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~ 104 (511)
|||||||||++|+++|++|++ .|.+|+|||++..
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~-~g~~V~l~e~~~~ 34 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAK-HGKKTLLLEQFDL 34 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHH-CCCeEEEEeccCC
Confidence 799999999999999999999 7999999999753
No 57
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.27 E-value=9.3e-11 Score=123.60 Aligned_cols=60 Identities=20% Similarity=0.287 Sum_probs=43.1
Q ss_pred hhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHHhcC
Q psy760 271 YIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSG 338 (511)
Q Consensus 271 ~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~~SG 338 (511)
.|...+++.|++|+++++|++|..++ +++++|+.. +. +++|+ .||+|+|+ +++.++..-|
T Consensus 206 ~l~~~~~~~G~~i~~~~~V~~i~~~~--~~~~~v~t~--~~--~~~a~-~VV~a~G~-~~~~l~~~~g 265 (416)
T PRK00711 206 RLAAMAEQLGVKFRFNTPVDGLLVEG--GRITGVQTG--GG--VITAD-AYVVALGS-YSTALLKPLG 265 (416)
T ss_pred HHHHHHHHCCCEEEcCCEEEEEEecC--CEEEEEEeC--Cc--EEeCC-EEEECCCc-chHHHHHHhC
Confidence 34455677899999999999998765 556666543 22 68897 69999997 4666665433
No 58
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.26 E-value=3e-11 Score=132.65 Aligned_cols=55 Identities=20% Similarity=0.236 Sum_probs=42.8
Q ss_pred hHhhh-hCCCcEEEeCceEEEEEEcCCCCcEEEEEEEE--CCeEEEEEeCcEEEEccCCCC
Q psy760 272 IDPIK-KRCNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFN 329 (511)
Q Consensus 272 L~~~~-~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~--~g~~~~v~A~k~VILAAGa~~ 329 (511)
|...+ +..|++++.++.|++|+.++ ++++||.+.. +++...++|+ .||||+|++.
T Consensus 143 L~~~~~~~~gv~i~~~~~v~~Li~~~--g~v~Gv~~~~~~~g~~~~i~Ak-~VIlATGG~~ 200 (577)
T PRK06069 143 LYSRALRFDNIHFYDEHFVTSLIVEN--GVFKGVTAIDLKRGEFKVFQAK-AGIIATGGAG 200 (577)
T ss_pred HHHHHHhcCCCEEEECCEEEEEEEEC--CEEEEEEEEEcCCCeEEEEECC-cEEEcCchhc
Confidence 43333 34699999999999999875 7899998753 4555678896 7999999974
No 59
>PRK08275 putative oxidoreductase; Provisional
Probab=99.25 E-value=7.6e-11 Score=128.81 Aligned_cols=61 Identities=25% Similarity=0.282 Sum_probs=47.1
Q ss_pred hHHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEE--CCeEEEEEeCcEEEEccCCCCc
Q psy760 268 AKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNS 330 (511)
Q Consensus 268 ~~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~--~g~~~~v~A~k~VILAAGa~~S 330 (511)
....|...+++.|++|++++.|++|+.+++ ++++||.+.. +++...++|+ .||||+|++..
T Consensus 139 i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~Ak-~VIlATGG~~~ 201 (554)
T PRK08275 139 IKKVLYRQLKRARVLITNRIMATRLLTDAD-GRVAGALGFDCRTGEFLVIRAK-AVILCCGAAGR 201 (554)
T ss_pred HHHHHHHHHHHCCCEEEcceEEEEEEEcCC-CeEEEEEEEecCCCcEEEEECC-EEEECCCCccc
Confidence 344565656778999999999999998733 7899998653 4555678885 79999999753
No 60
>PRK09077 L-aspartate oxidase; Provisional
Probab=99.25 E-value=8.4e-11 Score=127.90 Aligned_cols=53 Identities=19% Similarity=0.223 Sum_probs=42.5
Q ss_pred hCCCcEEEeCceEEEEEEcC----CCCcEEEEEEEE--CCeEEEEEeCcEEEEccCCCCc
Q psy760 277 KRCNLTVKDSSFVKKILIDP----VTKKACGVLATI--KGIDHKILARKEVILSAGAFNS 330 (511)
Q Consensus 277 ~r~gv~v~~~t~V~~I~~d~----~~~ra~GV~~~~--~g~~~~v~A~k~VILAAGa~~S 330 (511)
++.|++|++++.|++|+.++ ++++|+||.+.. +++...+.|+ .||||+|++..
T Consensus 150 ~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak-~VVlATGG~~~ 208 (536)
T PRK09077 150 NHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAK-FVVLATGGASK 208 (536)
T ss_pred hCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEecC-eEEECCCCCCC
Confidence 45699999999999998764 137899998864 4666688895 89999999863
No 61
>PRK08071 L-aspartate oxidase; Provisional
Probab=99.24 E-value=4.6e-11 Score=129.12 Aligned_cols=56 Identities=21% Similarity=0.283 Sum_probs=43.6
Q ss_pred hhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEE-CCeEEEEEeCcEEEEccCCCCc
Q psy760 271 YIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATI-KGIDHKILARKEVILSAGAFNS 330 (511)
Q Consensus 271 ~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~-~g~~~~v~A~k~VILAAGa~~S 330 (511)
.|...++ .|++|++++.|++|+.++ +++.||.+.. +++.+.++|+ .||||+|++..
T Consensus 135 ~L~~~~~-~gV~i~~~~~v~~Li~~~--g~v~Gv~~~~~~g~~~~i~Ak-~VVlATGG~~~ 191 (510)
T PRK08071 135 HLLQELV-PHVTVVEQEMVIDLIIEN--GRCIGVLTKDSEGKLKRYYAD-YVVLASGGCGG 191 (510)
T ss_pred HHHHHHh-cCCEEEECeEhhheeecC--CEEEEEEEEECCCcEEEEEcC-eEEEecCCCcc
Confidence 3434343 699999999999998765 7899998765 4555578886 79999999764
No 62
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=99.24 E-value=2e-10 Score=126.56 Aligned_cols=56 Identities=18% Similarity=0.291 Sum_probs=42.8
Q ss_pred hhHhhhhCC-CcEEEeCceEEEEEEcCCCCcEEEEEEE--ECCeEEEEEeCcEEEEccCCCC
Q psy760 271 YIDPIKKRC-NLTVKDSSFVKKILIDPVTKKACGVLAT--IKGIDHKILARKEVILSAGAFN 329 (511)
Q Consensus 271 ~L~~~~~r~-gv~v~~~t~V~~I~~d~~~~ra~GV~~~--~~g~~~~v~A~k~VILAAGa~~ 329 (511)
.|...+++. |++++.++.|++|+.++ ++++||... .+++.+.++|+ .||||+|++.
T Consensus 137 ~L~~~a~~~ggV~i~~~~~v~~Li~~~--g~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~~ 195 (608)
T PRK06854 137 IVAEAAKKALGDNVLNRVFITDLLVDD--NRIAGAVGFSVRENKFYVFKAK-AVIVATGGAA 195 (608)
T ss_pred HHHHHHHhcCCCEEEeCCEEEEEEEeC--CEEEEEEEEEccCCcEEEEECC-EEEECCCchh
Confidence 344445454 59999999999998875 789999764 34555678896 7999999975
No 63
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.24 E-value=3.1e-11 Score=129.25 Aligned_cols=63 Identities=21% Similarity=0.165 Sum_probs=45.8
Q ss_pred hhHhhhhC----CC--cEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHHhcCCCC
Q psy760 271 YIDPIKKR----CN--LTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGP 341 (511)
Q Consensus 271 ~L~~~~~r----~g--v~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~~SGIGp 341 (511)
.+...+++ .| ++|+++++|++|..++ +....|... ++ +++|+ .||+|||+ ++..|+..+|++.
T Consensus 216 al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~--~~~~~V~T~-~G---~i~A~-~VVvaAG~-~S~~La~~~Gi~~ 284 (497)
T PTZ00383 216 SFVKHARRDALVPGKKISINLNTEVLNIERSN--DSLYKIHTN-RG---EIRAR-FVVVSACG-YSLLFAQKMGYGL 284 (497)
T ss_pred HHHHHHHhhhhhcCCCEEEEeCCEEEEEEecC--CCeEEEEEC-CC---EEEeC-EEEECcCh-hHHHHHHHhCCCC
Confidence 34344556 56 8899999999998764 334445432 23 68997 69999998 5889999999853
No 64
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.23 E-value=1.2e-10 Score=114.68 Aligned_cols=57 Identities=12% Similarity=0.119 Sum_probs=42.8
Q ss_pred HhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEEC--------CeEEEEEeCcEEEEccCCC
Q psy760 270 DYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIK--------GIDHKILARKEVILSAGAF 328 (511)
Q Consensus 270 ~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~--------g~~~~v~A~k~VILAAGa~ 328 (511)
..|...+.+.|++++.++.|++|..+++ +++.||.+... .+..+++|+ .||+|+|..
T Consensus 108 ~~L~~~A~~~Gv~I~~~t~V~dl~~~~~-g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak-~VI~ATG~~ 172 (257)
T PRK04176 108 AKLAAAAIDAGAKIFNGVSVEDVILRED-PRVAGVVINWTPVEMAGLHVDPLTIEAK-AVVDATGHD 172 (257)
T ss_pred HHHHHHHHHcCCEEEcCceeceeeEeCC-CcEEEEEEccccccccCCCCCcEEEEcC-EEEEEeCCC
Confidence 3455556678999999999999988663 48999886421 123579996 799999974
No 65
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=99.22 E-value=6.8e-11 Score=130.03 Aligned_cols=51 Identities=20% Similarity=0.210 Sum_probs=41.9
Q ss_pred CCCcEEEeCceEEEEEEcCCCCcEEEEEEEE--CCeEEEEEeCcEEEEccCCCCc
Q psy760 278 RCNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNS 330 (511)
Q Consensus 278 r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~--~g~~~~v~A~k~VILAAGa~~S 330 (511)
+.|++|++++.|++|+.+++ ++|+||.+.. +++.+.+.|+ .||||||++..
T Consensus 145 ~~gV~i~~~t~v~~Li~dd~-grV~GV~~~~~~~g~~~~i~Ak-aVVLATGG~g~ 197 (603)
T TIGR01811 145 AGLVEKYEGWEMLDIIVVDG-NRARGIIARNLVTGEIETHSAD-AVILATGGYGN 197 (603)
T ss_pred cCCcEEEeCcEEEEEEEcCC-CEEEEEEEEECCCCcEEEEEcC-EEEECCCCCcC
Confidence 35899999999999998753 6999999874 4555678896 79999999853
No 66
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.20 E-value=2.6e-10 Score=122.22 Aligned_cols=66 Identities=20% Similarity=0.119 Sum_probs=46.1
Q ss_pred hhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEE--ECCeEEEEEeCcEEEEccCCCCcHHHHHhcCCC
Q psy760 271 YIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLAT--IKGIDHKILARKEVILSAGAFNSPKLLMLSGIG 340 (511)
Q Consensus 271 ~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~--~~g~~~~v~A~k~VILAAGa~~SP~LL~~SGIG 340 (511)
.|...+++.|++|+++++|++|..+++ +.+ .|.+. ..++..+++|+ .||+|||+ ++.+++...|+.
T Consensus 183 aL~~~a~~~Gv~i~~~t~V~~i~~~~~-~~v-~v~~~~~~~g~~~~i~A~-~VV~AAG~-~s~~La~~~Gi~ 250 (483)
T TIGR01320 183 QLLGYLVQNGTTIRFGHEVRNLKRQSD-GSW-TVTVKNTRTGGKRTLNTR-FVFVGAGG-GALPLLQKSGIP 250 (483)
T ss_pred HHHHHHHhCCCEEEeCCEEEEEEEcCC-CeE-EEEEeeccCCceEEEECC-EEEECCCc-chHHHHHHcCCC
Confidence 344455677999999999999987542 222 23332 23333468997 69999997 578888888875
No 67
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.20 E-value=1.5e-10 Score=113.76 Aligned_cols=58 Identities=14% Similarity=0.138 Sum_probs=43.2
Q ss_pred HHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEEC-----C---eEEEEEeCcEEEEccCC
Q psy760 269 KDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIK-----G---IDHKILARKEVILSAGA 327 (511)
Q Consensus 269 ~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~-----g---~~~~v~A~k~VILAAGa 327 (511)
...|...+.+.|++++.++.|++|+.+++..+++||.+... + +..+++|+ -||.|+|.
T Consensus 103 ~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak-~VVdATG~ 168 (254)
T TIGR00292 103 ISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSR-VVVDATGH 168 (254)
T ss_pred HHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcC-EEEEeecC
Confidence 34555556678999999999999998764237999987421 1 24589996 89999995
No 68
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.16 E-value=6.3e-10 Score=115.53 Aligned_cols=35 Identities=26% Similarity=0.393 Sum_probs=32.8
Q ss_pred cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760 69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104 (511)
Q Consensus 69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~ 104 (511)
+|||+|||||++|+++|+.|++ .|.+|+||||+..
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~-~g~~V~lie~~~~ 37 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLAR-RGLRVLGLDRFMP 37 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHH-CCCeEEEEecccC
Confidence 5999999999999999999999 7999999999853
No 69
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.16 E-value=6.9e-10 Score=119.15 Aligned_cols=67 Identities=19% Similarity=0.153 Sum_probs=45.7
Q ss_pred HhhHhhhhCCC-cEEEeCceEEEEEEcCCCCcEEEEEEEE--CCeEEEEEeCcEEEEccCCCCcHHHHHhcCCC
Q psy760 270 DYIDPIKKRCN-LTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNSPKLLMLSGIG 340 (511)
Q Consensus 270 ~~L~~~~~r~g-v~v~~~t~V~~I~~d~~~~ra~GV~~~~--~g~~~~v~A~k~VILAAGa~~SP~LL~~SGIG 340 (511)
..|...+++.| ++|+++++|++|..+++ ++++ |.+.. .++..+++|+ .||+|||+ ++..++..+|+.
T Consensus 187 ~aL~~~a~~~Ggv~i~~~teV~~I~~~~d-g~~~-v~~~~~~~G~~~~i~A~-~VVvaAGg-~s~~L~~~~Gi~ 256 (494)
T PRK05257 187 RQLVGYLQKQGNFELQLGHEVRDIKRNDD-GSWT-VTVKDLKTGEKRTVRAK-FVFIGAGG-GALPLLQKSGIP 256 (494)
T ss_pred HHHHHHHHhCCCeEEEeCCEEEEEEECCC-CCEE-EEEEEcCCCceEEEEcC-EEEECCCc-chHHHHHHcCCC
Confidence 34444455555 89999999999987653 3332 33322 3433368997 69999998 578888888874
No 70
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=99.16 E-value=8.8e-10 Score=120.88 Aligned_cols=57 Identities=23% Similarity=0.290 Sum_probs=43.7
Q ss_pred hHhhhhCCCcEEEeCceEEEEEEcCCC-CcEEEEEEE--ECCeEEEEEeCcEEEEccCCCC
Q psy760 272 IDPIKKRCNLTVKDSSFVKKILIDPVT-KKACGVLAT--IKGIDHKILARKEVILSAGAFN 329 (511)
Q Consensus 272 L~~~~~r~gv~v~~~t~V~~I~~d~~~-~ra~GV~~~--~~g~~~~v~A~k~VILAAGa~~ 329 (511)
+.....+.+++|+.++.|++|+.++++ ++|+||.+. .+++...+.|+ .||||||++.
T Consensus 132 l~~~l~~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~ 191 (614)
T TIGR02061 132 VAEAAKNALGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKAK-TVIVAAGGAV 191 (614)
T ss_pred HHHHHHhCCCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEECC-EEEECCCccc
Confidence 333344567899999999999986532 689999874 35666678896 8999999985
No 71
>PRK07512 L-aspartate oxidase; Provisional
Probab=99.16 E-value=3.4e-10 Score=122.50 Aligned_cols=58 Identities=24% Similarity=0.360 Sum_probs=44.9
Q ss_pred HhhHhhhh-CCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCc
Q psy760 270 DYIDPIKK-RCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNS 330 (511)
Q Consensus 270 ~~L~~~~~-r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~S 330 (511)
..|...++ +.|++|+.++.|++|+.++ ++++||.+...++...+.|+ .||||+|++..
T Consensus 140 ~~L~~~~~~~~gV~i~~~~~v~~Li~~~--g~v~Gv~~~~~~~~~~i~Ak-~VVLATGG~~~ 198 (513)
T PRK07512 140 RALIAAVRATPSITVLEGAEARRLLVDD--GAVAGVLAATAGGPVVLPAR-AVVLATGGIGG 198 (513)
T ss_pred HHHHHHHHhCCCCEEEECcChhheeecC--CEEEEEEEEeCCeEEEEECC-EEEEcCCCCcC
Confidence 34444444 4599999999999998765 79999988765555578896 79999999863
No 72
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.16 E-value=3.5e-10 Score=130.04 Aligned_cols=49 Identities=20% Similarity=0.281 Sum_probs=40.5
Q ss_pred CCcEEEeCceEEEEEEcCCCCcEEEEEEEE--CCeEEEEEeCcEEEEccCCCCc
Q psy760 279 CNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNS 330 (511)
Q Consensus 279 ~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~--~g~~~~v~A~k~VILAAGa~~S 330 (511)
.++++.+++.+++|+.++ ++|+||.... +|+.+.+.|+ .||||||+++.
T Consensus 156 ~~i~~~~~~~~~~Li~~~--g~v~Gv~~~~~~~g~~~~i~Ak-aVILATGG~g~ 206 (897)
T PRK13800 156 ERIRIENRLMPVRVLTEG--GRAVGAAALNTRTGEFVTVGAK-AVILATGPCGR 206 (897)
T ss_pred CCcEEEeceeeEEEEeeC--CEEEEEEEEecCCCcEEEEECC-EEEECCCcccc
Confidence 479999999999998875 7999998753 5667788895 89999999863
No 73
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.15 E-value=4e-10 Score=116.68 Aligned_cols=33 Identities=33% Similarity=0.462 Sum_probs=31.4
Q ss_pred ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
|||||||||++|+++|++|++ .|.+|+|||++.
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~-~G~~V~vle~~~ 33 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAAR-RGLSVTVIERSS 33 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHH-CCCeEEEEeCCC
Confidence 699999999999999999999 799999999985
No 74
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.15 E-value=1.1e-09 Score=116.09 Aligned_cols=76 Identities=17% Similarity=0.204 Sum_probs=61.4
Q ss_pred hhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEE--CCeEEEEEeCcEEEEccCCCCcHHHHHhcCCCCccc--cc-cCCC
Q psy760 276 KKRCNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEH--LN-DLNI 350 (511)
Q Consensus 276 ~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~--~g~~~~v~A~k~VILAAGa~~SP~LL~~SGIGp~~~--L~-~~gi 350 (511)
+...|.++++.++|++++.++ + ++||++.+ .|+++.++|+ .||.|||. ++-+++...+..+..+ +. ..|+
T Consensus 174 A~~~Ga~il~~~~v~~~~re~--~-v~gV~~~D~~tg~~~~ira~-~VVNAaGp-W~d~i~~~~~~~~~~~~~vr~skGs 248 (532)
T COG0578 174 AAEHGAEILTYTRVESLRREG--G-VWGVEVEDRETGETYEIRAR-AVVNAAGP-WVDEILEMAGLEQSPHIGVRPSKGS 248 (532)
T ss_pred HHhcccchhhcceeeeeeecC--C-EEEEEEEecCCCcEEEEEcC-EEEECCCc-cHHHHHHhhcccCCCCccceeccce
Confidence 567899999999999999987 5 99999984 5788899997 69999996 6889999887665432 33 5787
Q ss_pred CccccC
Q psy760 351 PVIKNL 356 (511)
Q Consensus 351 ~vv~~~ 356 (511)
.+|.+-
T Consensus 249 HlVv~~ 254 (532)
T COG0578 249 HLVVDK 254 (532)
T ss_pred EEEecc
Confidence 777765
No 75
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=99.14 E-value=6e-12 Score=129.49 Aligned_cols=175 Identities=12% Similarity=0.003 Sum_probs=105.3
Q ss_pred ccchhHHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHHhcCCCCcc
Q psy760 264 RRSSAKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQE 343 (511)
Q Consensus 264 r~~~~~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~~SGIGp~~ 343 (511)
+..+....|...+++.|++|+++++|++| ++ ++ ..|.+..++ ..++|+ .||||+|+...|++= -+|-| -.
T Consensus 84 ~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~--~~-~~v~~~~~~--~~~~a~-~vIlAtGG~s~p~~G-s~g~g-y~ 153 (376)
T TIGR03862 84 KAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QG--GT-LRFETPDGQ--STIEAD-AVVLALGGASWSQLG-SDGAW-QQ 153 (376)
T ss_pred CHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eC--Cc-EEEEECCCc--eEEecC-EEEEcCCCccccccC-CCcHH-HH
Confidence 45566667777788999999999999999 33 22 344432222 258897 699999998777541 11111 11
Q ss_pred ccccCCCCccccCc--cchhhhhc-ccCceEEEEEcCCCCcchhhhhcchHHHHHhHHhcCCCCcccCccccee---eee
Q psy760 344 HLNDLNIPVIKNLR--VGENLQEH-LAMAGLTFLVNQPIGLLQDRLIKEMPVHFAGKLRHSLSPITNSETLSTN---IKT 417 (511)
Q Consensus 344 ~L~~~gi~vv~~~P--VG~nl~DH-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gpl~~~~~~~~~---~~~ 417 (511)
.++++||+++...| |...+.+. .....+.+...+.+.... . . ....|++..+|++.+| +++
T Consensus 154 la~~lGh~i~~~~PaL~pl~~~~~~~~~~~L~Gv~~~~~~~~~-~-~-----------~~~~GellFTh~GiSGpavl~l 220 (376)
T TIGR03862 154 VLDQRGVSVAPFAPANCGFLVDWSAHFASRFAGEPLKRVNATA-G-T-----------QQTRGEIVITARGLEGGLIYAL 220 (376)
T ss_pred HHHHCCCcccCCcCeeceEEccCchhhHhhcCCCcccceEEEe-C-C-----------eeEeeeEEEECCCccHHHHHHH
Confidence 26789999999999 77777542 110002221111111100 0 0 1235999999999998 777
Q ss_pred hhccchhhhhcc-CCCeEEEEecCcceeEEEeccCCCCCCCceEEEecC
Q psy760 418 IFAAHHDKINKS-GEDITIRLIKDLIGILIALALPRKFSTWGKFQVSSS 465 (511)
Q Consensus 418 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (511)
|.... ..+... ...|.|+|.++.+.+++.+.+.+ +.+++++...
T Consensus 221 S~~~~-~~~~~~~~~~i~idf~P~~~~~~l~~~l~~---~~~~k~l~~~ 265 (376)
T TIGR03862 221 SAALR-EQIKAGGSANLFLDLLPDLSLEQVTKRLAA---PRGKQSLSNH 265 (376)
T ss_pred HHHHH-HHHhcCCceEEEEECCCCCCHHHHHHHHHh---hcccchHHHH
Confidence 76543 332333 56699999998654444444443 2256666544
No 76
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=99.13 E-value=4.1e-10 Score=119.49 Aligned_cols=65 Identities=17% Similarity=0.286 Sum_probs=48.6
Q ss_pred hHHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHH
Q psy760 268 AKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLM 335 (511)
Q Consensus 268 ~~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~ 335 (511)
....|...+++.|++|+++++|++|+.++++++++||....++ ..++|+ .||||+|++...+-++
T Consensus 125 l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~--~~i~ak-~VIlAtGG~~~n~~~~ 189 (432)
T TIGR02485 125 LTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGT--HRITTQ-ALVLAAGGLGANRDWL 189 (432)
T ss_pred HHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCc--EEEEcC-EEEEcCCCcccCHHHH
Confidence 3445555677889999999999999886323789998764332 378885 7999999998766443
No 77
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.13 E-value=1.7e-09 Score=119.54 Aligned_cols=65 Identities=15% Similarity=0.181 Sum_probs=50.0
Q ss_pred hHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEE--CCeEEEEEeCcEEEEccCCCCcHHHHHhcC
Q psy760 272 IDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNSPKLLMLSG 338 (511)
Q Consensus 272 L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~--~g~~~~v~A~k~VILAAGa~~SP~LL~~SG 338 (511)
+...+++.|++|+.+++|++|..++++++++||++.+ +++.++++|+ .||+|||+ ++.+++...|
T Consensus 238 l~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~-~VVnAaGa-ws~~l~~~~g 304 (627)
T PLN02464 238 LACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAK-VVVNAAGP-FCDEVRKMAD 304 (627)
T ss_pred HHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeC-EEEECCCH-hHHHHHHhcc
Confidence 3344677899999999999998864126888988753 4455578997 69999997 5888888765
No 78
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.12 E-value=4.9e-10 Score=104.77 Aligned_cols=36 Identities=44% Similarity=0.646 Sum_probs=30.3
Q ss_pred CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760 68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104 (511)
Q Consensus 68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~ 104 (511)
.++||+|||+|++|+++|+.||+ .|+||+|+|+...
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~-~g~kV~v~E~~~~ 51 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAK-AGLKVAVIERKLS 51 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHH-HTS-EEEEESSSS
T ss_pred ccCCEEEECCChhHHHHHHHHHH-CCCeEEEEecCCC
Confidence 47999999999999999999999 7999999999743
No 79
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.11 E-value=6.9e-10 Score=103.16 Aligned_cols=34 Identities=47% Similarity=0.674 Sum_probs=32.1
Q ss_pred CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760 68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG 102 (511)
Q Consensus 68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG 102 (511)
.+.||||||+|++|++||++||+ .|.+|+|+||.
T Consensus 29 ~esDViIVGaGPsGLtAAyyLAk-~g~kV~i~E~~ 62 (262)
T COG1635 29 LESDVIIVGAGPSGLTAAYYLAK-AGLKVAIFERK 62 (262)
T ss_pred hhccEEEECcCcchHHHHHHHHh-CCceEEEEEee
Confidence 36899999999999999999999 79999999986
No 80
>PRK08401 L-aspartate oxidase; Provisional
Probab=99.11 E-value=4.7e-10 Score=120.08 Aligned_cols=55 Identities=16% Similarity=0.298 Sum_probs=41.2
Q ss_pred hHHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCc
Q psy760 268 AKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNS 330 (511)
Q Consensus 268 ~~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~S 330 (511)
....|...+++.|++++.+ .|++|+.++ ++++||.. +++ .++|+ .||||||++..
T Consensus 122 i~~~L~~~~~~~gv~i~~~-~v~~l~~~~--g~v~Gv~~--~g~--~i~a~-~VVLATGG~~~ 176 (466)
T PRK08401 122 IIKILYKHARELGVNFIRG-FAEELAIKN--GKAYGVFL--DGE--LLKFD-ATVIATGGFSG 176 (466)
T ss_pred HHHHHHHHHHhcCCEEEEe-EeEEEEeeC--CEEEEEEE--CCE--EEEeC-eEEECCCcCcC
Confidence 3445555567789999876 899987754 78888876 333 57886 79999999765
No 81
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=99.05 E-value=8.7e-09 Score=110.20 Aligned_cols=60 Identities=25% Similarity=0.122 Sum_probs=42.5
Q ss_pred hCCCcEEEeCceEEEEEEcCCCCcEEEEEE--EECCeEEEEEeCcEEEEccCCCCcHHHHHhcCCC
Q psy760 277 KRCNLTVKDSSFVKKILIDPVTKKACGVLA--TIKGIDHKILARKEVILSAGAFNSPKLLMLSGIG 340 (511)
Q Consensus 277 ~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~--~~~g~~~~v~A~k~VILAAGa~~SP~LL~~SGIG 340 (511)
++.|++++++++|++|..+++ +..+ |.+ ...++..+++|+ .||+|||+ ++.+++..+|+.
T Consensus 196 ~~~Gv~i~~~~~V~~I~~~~d-~~w~-v~v~~t~~g~~~~i~Ad-~VV~AAGa-wS~~La~~~Gi~ 257 (497)
T PRK13339 196 SHPNAQVKYNHEVVDLERLSD-GGWE-VTVKDRNTGEKREQVAD-YVFIGAGG-GAIPLLQKSGIP 257 (497)
T ss_pred hCCCcEEEeCCEEEEEEECCC-CCEE-EEEEecCCCceEEEEcC-EEEECCCc-chHHHHHHcCCC
Confidence 456999999999999987632 3332 332 123323368897 69999998 688899998874
No 82
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.05 E-value=7.8e-09 Score=111.87 Aligned_cols=61 Identities=15% Similarity=0.038 Sum_probs=44.5
Q ss_pred hhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEE--CCeEEEEEeCcEEEEccCCCCcHHHHHh-cCC
Q psy760 274 PIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNSPKLLML-SGI 339 (511)
Q Consensus 274 ~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~--~g~~~~v~A~k~VILAAGa~~SP~LL~~-SGI 339 (511)
..+.+.|++++.+++|++|..++ + ..+|.+.+ +++..+++|+ .||+|||+ ++.+++.. .|+
T Consensus 163 ~~A~~~Ga~i~~~~~V~~i~~~~--~-~~~v~~~~~~~g~~~~i~a~-~VVnAaG~-wa~~l~~~~~g~ 226 (508)
T PRK12266 163 RDAAERGAEILTRTRVVSARREN--G-LWHVTLEDTATGKRYTVRAR-ALVNAAGP-WVKQFLDDGLGL 226 (508)
T ss_pred HHHHHcCCEEEcCcEEEEEEEeC--C-EEEEEEEEcCCCCEEEEEcC-EEEECCCc-cHHHHHhhccCC
Confidence 34667899999999999998764 3 34566553 3555689997 69999997 57777653 354
No 83
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=99.05 E-value=1.5e-10 Score=122.59 Aligned_cols=63 Identities=22% Similarity=0.280 Sum_probs=0.0
Q ss_pred hhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHHhcCC
Q psy760 271 YIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGI 339 (511)
Q Consensus 271 ~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~~SGI 339 (511)
.|...+++.|++|++++.|++++.++ ++++||.+...+...+|+|+ .||-|+| ...|..++|.
T Consensus 95 ~l~~~l~e~gv~v~~~t~v~~v~~~~--~~i~~V~~~~~~g~~~i~A~-~~IDaTG---~g~l~~~aG~ 157 (428)
T PF12831_consen 95 VLDEMLAEAGVEVLLGTRVVDVIRDG--GRITGVIVETKSGRKEIRAK-VFIDATG---DGDLAALAGA 157 (428)
T ss_dssp ---------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccc--cccccccccccccccccccc-ccccccc---cccccccccc
Confidence 45555567899999999999999986 78999999854446689996 7999999 4678888874
No 84
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.04 E-value=7.4e-09 Score=111.98 Aligned_cols=61 Identities=13% Similarity=0.060 Sum_probs=44.7
Q ss_pred hhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEEC-CeEEEEEeCcEEEEccCCCCcHHHHH-hcCC
Q psy760 274 PIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIK-GIDHKILARKEVILSAGAFNSPKLLM-LSGI 339 (511)
Q Consensus 274 ~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~-g~~~~v~A~k~VILAAGa~~SP~LL~-~SGI 339 (511)
..+++.|++++.+++|++|..++ + ..+|.+.++ +++.+++|+ .||.|||+ ++++++. ..|+
T Consensus 163 ~~a~~~Ga~i~~~~~V~~i~~~~--~-~~~v~~~~~~g~~~~i~a~-~VVnAaG~-wa~~l~~~~~g~ 225 (502)
T PRK13369 163 LDAAERGATILTRTRCVSARREG--G-LWRVETRDADGETRTVRAR-ALVNAAGP-WVTDVIHRVAGS 225 (502)
T ss_pred HHHHHCCCEEecCcEEEEEEEcC--C-EEEEEEEeCCCCEEEEEec-EEEECCCc-cHHHHHhhccCC
Confidence 34667899999999999998764 3 345665543 555679997 69999997 5777765 3354
No 85
>KOG2820|consensus
Probab=99.01 E-value=2.9e-09 Score=104.76 Aligned_cols=65 Identities=25% Similarity=0.219 Sum_probs=49.0
Q ss_pred hhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHHhc-CCC
Q psy760 271 YIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLS-GIG 340 (511)
Q Consensus 271 ~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~~S-GIG 340 (511)
.+...++..|+.++.+..|+.+.+.++.+..++|+++++. .+.|+ .+|+++|+ ++.++|..| +||
T Consensus 158 ~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs---~Y~ak-kiI~t~Ga-Wi~klL~~~~~~~ 223 (399)
T KOG2820|consen 158 ALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGS---IYHAK-KIIFTVGA-WINKLLPTSLAIG 223 (399)
T ss_pred HHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCC---eeecc-eEEEEecH-HHHhhcCcccccC
Confidence 4555677899999999999999887654566677665442 57887 59999998 588888764 443
No 86
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=99.00 E-value=4.6e-09 Score=113.79 Aligned_cols=99 Identities=20% Similarity=0.204 Sum_probs=59.0
Q ss_pred HHHHHHHHcCCCCCC-CCCC---CccceeecccccCCCcc-cchhHHhhHhhhhC-CCcEEEeCceEEEEEEcCCCCcEE
Q psy760 229 AFLQAGMEAGYPLVD-YNGK---TQTGFARAQATLHKRSR-RSSAKDYIDPIKKR-CNLTVKDSSFVKKILIDPVTKKAC 302 (511)
Q Consensus 229 ~~~~a~~~~G~~~~~-~~~~---~~~G~~~~~~~~~~g~r-~~~~~~~L~~~~~r-~gv~v~~~t~V~~I~~d~~~~ra~ 302 (511)
..+..+++.|.++.. .++. ...|......++..+.+ .......|.....+ .+++++.+..|++|+.+++ +++.
T Consensus 96 ~~v~~Le~~G~~f~r~~~G~~~~r~fgg~~~~rt~~~~~~tG~~ll~~L~~~~~~~~~~~~~~~~~~~~l~~~~~-~~v~ 174 (562)
T COG1053 96 EAVDELEKWGVPFSRTEDGRIYQRRFGGHSKPRTCFAADKTGHELLHTLYEQLLKFSGIEIFDEYFVLDLLVDDG-GGVA 174 (562)
T ss_pred HHHHHHHHhCCCcccCCCccccccccCCcCCCcceecCCCCcHHHHHHHHHHHHHhhcchhhhhhhhhhheecCC-CcEE
Confidence 445566778888742 2221 11111111122322222 22233334333444 7789999999999998874 4488
Q ss_pred EEEEE--ECCeEEEEEeCcEEEEccCCCC
Q psy760 303 GVLAT--IKGIDHKILARKEVILSAGAFN 329 (511)
Q Consensus 303 GV~~~--~~g~~~~v~A~k~VILAAGa~~ 329 (511)
||... .+++...++| |.||+|+|+.+
T Consensus 175 Gvv~~~~~~g~~~~~~a-kavilaTGG~g 202 (562)
T COG1053 175 GVVARDLRTGELYVFRA-KAVILATGGAG 202 (562)
T ss_pred EEEEEEecCCcEEEEec-CcEEEccCCce
Confidence 88765 3567778888 47999999987
No 87
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.98 E-value=1.7e-09 Score=111.84 Aligned_cols=101 Identities=18% Similarity=0.247 Sum_probs=61.7
Q ss_pred HHHHHHHHHHcCCCCCC-CCCCC---ccceeecccccCC-CcccchhHHhhHh-hhhCCCcEEEeCceEEEEEEcCCCCc
Q psy760 227 LDAFLQAGMEAGYPLVD-YNGKT---QTGFARAQATLHK-RSRRSSAKDYIDP-IKKRCNLTVKDSSFVKKILIDPVTKK 300 (511)
Q Consensus 227 ~~~~~~a~~~~G~~~~~-~~~~~---~~G~~~~~~~~~~-g~r~~~~~~~L~~-~~~r~gv~v~~~t~V~~I~~d~~~~r 300 (511)
....++.+.+.|+++.. ..+.- ..|......-.+. +..-......|.. +.+++|++|+.++.+.+|+.+++ ..
T Consensus 89 ~~~ai~~Li~~Gv~FDr~~~g~~~lt~EggHS~rRIlH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~-~~ 167 (518)
T COG0029 89 APEAIEWLIDLGVPFDRDEDGRLHLTREGGHSRRRILHAADATGKEIMTALLKKVRNRPNITVLEGAEALDLIIEDG-IG 167 (518)
T ss_pred HHHHHHHHHHcCCCCcCCCCCceeeeeecccCCceEEEecCCccHHHHHHHHHHHhcCCCcEEEecchhhhhhhcCC-ce
Confidence 34556777788999842 22211 1121111111111 1122233334433 44569999999999999999872 25
Q ss_pred EEEEEEEECC-eEEEEEeCcEEEEccCCCC
Q psy760 301 ACGVLATIKG-IDHKILARKEVILSAGAFN 329 (511)
Q Consensus 301 a~GV~~~~~g-~~~~v~A~k~VILAAGa~~ 329 (511)
+.||.+...+ +..+++|+ .||||+|+++
T Consensus 168 ~~Gv~~~~~~~~~~~~~a~-~vVLATGG~g 196 (518)
T COG0029 168 VAGVLVLNRNGELGTFRAK-AVVLATGGLG 196 (518)
T ss_pred EeEEEEecCCCeEEEEecC-eEEEecCCCc
Confidence 5699887654 46789996 7999999964
No 88
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.97 E-value=1.3e-09 Score=115.44 Aligned_cols=66 Identities=20% Similarity=0.214 Sum_probs=47.5
Q ss_pred hhHHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHHhcCCCC
Q psy760 267 SAKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGP 341 (511)
Q Consensus 267 ~~~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~~SGIGp 341 (511)
....+|...+++.|++|+++++|++|..++ +++++|. .+++ +++|+ -||+|+|. +..+....|+..
T Consensus 109 ~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~--g~v~~v~--~~g~--~i~A~-~VI~A~G~--~s~l~~~lgl~~ 174 (428)
T PRK10157 109 KFDAWLMEQAEEAGAQLITGIRVDNLVQRD--GKVVGVE--ADGD--VIEAK-TVILADGV--NSILAEKLGMAK 174 (428)
T ss_pred HHHHHHHHHHHHCCCEEECCCEEEEEEEeC--CEEEEEE--cCCc--EEECC-EEEEEeCC--CHHHHHHcCCCC
Confidence 345567667778899999999999998765 5665554 2333 68897 69999997 456666666543
No 89
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.97 E-value=2.9e-09 Score=118.93 Aligned_cols=34 Identities=32% Similarity=0.569 Sum_probs=32.3
Q ss_pred cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
++||||||||++|+++|++|++ .|++|+||||+.
T Consensus 260 ~~dVvIIGaGIaG~s~A~~La~-~G~~V~VlE~~~ 293 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALALAR-RGWQVTLYEADE 293 (662)
T ss_pred CCCEEEECccHHHHHHHHHHHH-CCCeEEEEecCC
Confidence 5899999999999999999999 799999999985
No 90
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.95 E-value=5e-09 Score=109.89 Aligned_cols=64 Identities=14% Similarity=0.180 Sum_probs=45.8
Q ss_pred HHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHHhcCCC
Q psy760 269 KDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIG 340 (511)
Q Consensus 269 ~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~~SGIG 340 (511)
..+|...+++.|++++.+++|+.+..+++ +.++++. .++ .+++|+ -||.|.|. ...+....|+-
T Consensus 98 d~~La~~A~~aGae~~~~~~~~~~~~~~~-~~~~~~~--~~~--~e~~a~-~vI~AdG~--~s~l~~~lg~~ 161 (396)
T COG0644 98 DKWLAERAEEAGAELYPGTRVTGVIREDD-GVVVGVR--AGD--DEVRAK-VVIDADGV--NSALARKLGLK 161 (396)
T ss_pred hHHHHHHHHHcCCEEEeceEEEEEEEeCC-cEEEEEE--cCC--EEEEcC-EEEECCCc--chHHHHHhCCC
Confidence 34677778889999999999999998874 3333332 222 489996 68888886 56666665654
No 91
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.92 E-value=9.1e-09 Score=100.92 Aligned_cols=65 Identities=17% Similarity=0.163 Sum_probs=47.1
Q ss_pred HHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEE--------EC-------CeEEEEEeCcEEEEccCCCCcHHH
Q psy760 269 KDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLAT--------IK-------GIDHKILARKEVILSAGAFNSPKL 333 (511)
Q Consensus 269 ~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~--------~~-------g~~~~v~A~k~VILAAGa~~SP~L 333 (511)
..-+..+.++.-+++...++|.+|...+ ++++||.-. ++ ...++++|. .||+++|+++-.+-
T Consensus 156 vr~~re~~~~~~v~f~~RHrV~~l~~t~--grvtGv~GdVLeps~v~RG~~SSR~~~GdFef~A~-aviv~SGGIGGnhe 232 (552)
T COG3573 156 VRRLREAQRRGRVTFRFRHRVDGLTTTG--GRVTGVRGDVLEPSDVERGQPSSREVVGDFEFSAS-AVIVASGGIGGNHE 232 (552)
T ss_pred HHHHHHHHhCCceEEEeeeeccceEeeC--CeEeeecccccCCCccccCCCccceeecceEEeee-eEEEecCCcCCCHH
Confidence 3344445557779999999999999987 899998632 10 012578886 79999999987765
Q ss_pred HHh
Q psy760 334 LML 336 (511)
Q Consensus 334 L~~ 336 (511)
|-+
T Consensus 233 lVR 235 (552)
T COG3573 233 LVR 235 (552)
T ss_pred HHH
Confidence 543
No 92
>KOG0042|consensus
Probab=98.92 E-value=6.7e-09 Score=107.66 Aligned_cols=77 Identities=21% Similarity=0.198 Sum_probs=55.3
Q ss_pred hhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEE--CCeEEEEEeCcEEEEccCCCCcHHHHHhcC-CCCccccccCCCCc
Q psy760 276 KKRCNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNSPKLLMLSG-IGPQEHLNDLNIPV 352 (511)
Q Consensus 276 ~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~--~g~~~~v~A~k~VILAAGa~~SP~LL~~SG-IGp~~~L~~~gi~v 352 (511)
+.+.|.+++-..+|.+++.+++ +++.|+++.+ .|+++.|+|+ .||-|||.| |..|++.-. --++--..+.|+.+
T Consensus 234 A~r~GA~v~Nh~ev~~Llkd~~-~kv~Ga~~rD~iTG~e~~I~Ak-~VVNATGpf-sDsIr~Mdd~~~~~i~~pSsGvHI 310 (680)
T KOG0042|consen 234 AARNGATVLNHVEVVSLLKDKD-GKVIGARARDHITGKEYEIRAK-VVVNATGPF-SDSIRKMDDEDAKPICVPSSGVHI 310 (680)
T ss_pred HHhcchhhhhHHHHHHHhhCCC-CceeeeEEEEeecCcEEEEEEE-EEEeCCCCc-cHHHHhhcccccCceeccCCceeE
Confidence 4578999999999999999886 6899999874 5889999995 799999987 555555432 11111123456665
Q ss_pred ccc
Q psy760 353 IKN 355 (511)
Q Consensus 353 v~~ 355 (511)
|.+
T Consensus 311 VlP 313 (680)
T KOG0042|consen 311 VLP 313 (680)
T ss_pred Ecc
Confidence 544
No 93
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.91 E-value=6.4e-09 Score=112.53 Aligned_cols=35 Identities=40% Similarity=0.563 Sum_probs=32.7
Q ss_pred CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
.+|||||||||.||+.||+.+|+ .|.+|+|||+..
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR-~G~kV~LiE~~~ 37 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAAR-MGAKTLLLTHNL 37 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHH-cCCcEEEEeccc
Confidence 46999999999999999999999 899999999874
No 94
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.91 E-value=3.6e-08 Score=102.63 Aligned_cols=37 Identities=32% Similarity=0.470 Sum_probs=34.0
Q ss_pred CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760 67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104 (511)
Q Consensus 67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~ 104 (511)
..++||||||||++|+++|+.|++ .|.+|+|+|++..
T Consensus 2 ~~~~~vvVIGgGi~Gls~A~~La~-~G~~V~vie~~~~ 38 (387)
T COG0665 2 SMKMDVVIIGGGIVGLSAAYYLAE-RGADVTVLEAGEA 38 (387)
T ss_pred CCcceEEEECCcHHHHHHHHHHHH-cCCEEEEEecCcc
Confidence 357999999999999999999999 8999999999864
No 95
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.89 E-value=2.1e-08 Score=107.51 Aligned_cols=65 Identities=14% Similarity=0.062 Sum_probs=48.8
Q ss_pred hhHHhhHhhhhCCCcEEEeCceEEEEEEcCC--CCcEEEEEEEEC--CeEEEEEeCcEEEEccCCCCcH
Q psy760 267 SAKDYIDPIKKRCNLTVKDSSFVKKILIDPV--TKKACGVLATIK--GIDHKILARKEVILSAGAFNSP 331 (511)
Q Consensus 267 ~~~~~L~~~~~r~gv~v~~~t~V~~I~~d~~--~~ra~GV~~~~~--g~~~~v~A~k~VILAAGa~~SP 331 (511)
+...-|...+++.|++|+++++|++|.++.+ .++|+||++..+ ++...+.+++.||+++|++...
T Consensus 227 SLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t~n 295 (576)
T PRK13977 227 SLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSITES 295 (576)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCccc
Confidence 3333444556789999999999999998622 368999999863 3445567778999999998554
No 96
>PRK10015 oxidoreductase; Provisional
Probab=98.88 E-value=4.2e-09 Score=111.61 Aligned_cols=65 Identities=20% Similarity=0.190 Sum_probs=45.8
Q ss_pred hHHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHHhcCCCC
Q psy760 268 AKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGP 341 (511)
Q Consensus 268 ~~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~~SGIGp 341 (511)
...+|...+++.|++++.+++|++|..++ +++++|.. ++. +++|+ .||+|.|. ...+-...|+.+
T Consensus 110 fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~--~~v~~v~~--~~~--~i~A~-~VI~AdG~--~s~v~~~lg~~~ 174 (429)
T PRK10015 110 LDPWLMEQAEQAGAQFIPGVRVDALVREG--NKVTGVQA--GDD--ILEAN-VVILADGV--NSMLGRSLGMVP 174 (429)
T ss_pred HHHHHHHHHHHcCCEEECCcEEEEEEEeC--CEEEEEEe--CCe--EEECC-EEEEccCc--chhhhcccCCCc
Confidence 44466666777899999999999998765 56666653 232 68996 79999997 444545455543
No 97
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.86 E-value=1.4e-08 Score=95.86 Aligned_cols=64 Identities=22% Similarity=0.353 Sum_probs=40.3
Q ss_pred hHHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHHhcC
Q psy760 268 AKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSG 338 (511)
Q Consensus 268 ~~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~~SG 338 (511)
...|+...+++.+++++++++|+++..+++ + +.+..... .+++|+ .||+|+|.+..|+.+..-|
T Consensus 84 v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~--~---w~v~~~~~-~~~~a~-~VVlAtG~~~~p~~p~~~g 147 (203)
T PF13738_consen 84 VLDYLQEYAERFGLEIRFNTRVESVRRDGD--G---WTVTTRDG-RTIRAD-RVVLATGHYSHPRIPDIPG 147 (203)
T ss_dssp HHHHHHHHHHHTTGGEETS--EEEEEEETT--T---EEEEETTS--EEEEE-EEEE---SSCSB---S-TT
T ss_pred HHHHHHHHHhhcCcccccCCEEEEEEEecc--E---EEEEEEec-ceeeee-eEEEeeeccCCCCcccccc
Confidence 345888888888999999999999999874 2 43443222 367897 6999999999998876544
No 98
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.82 E-value=4e-08 Score=104.82 Aligned_cols=68 Identities=16% Similarity=0.288 Sum_probs=47.2
Q ss_pred hHHhhHhhhhCCCcE--EEeCceEEEEEEcCCCCcEEEEEEEECC-eEEEEEeCcEEEEccCCCCcHHHHHhcCC
Q psy760 268 AKDYIDPIKKRCNLT--VKDSSFVKKILIDPVTKKACGVLATIKG-IDHKILARKEVILSAGAFNSPKLLMLSGI 339 (511)
Q Consensus 268 ~~~~L~~~~~r~gv~--v~~~t~V~~I~~d~~~~ra~GV~~~~~g-~~~~v~A~k~VILAAGa~~SP~LL~~SGI 339 (511)
...||...+++.|+. |..+++|++|..++ ++. -|.+...+ ...+..++ .||+|+|.+..|.+...-|+
T Consensus 113 v~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~--~~w-~V~~~~~~~~~~~~~~d-~VIvAtG~~~~P~~P~ipG~ 183 (461)
T PLN02172 113 VLAYLQDFAREFKIEEMVRFETEVVRVEPVD--GKW-RVQSKNSGGFSKDEIFD-AVVVCNGHYTEPNVAHIPGI 183 (461)
T ss_pred HHHHHHHHHHHcCCcceEEecCEEEEEeecC--CeE-EEEEEcCCCceEEEEcC-EEEEeccCCCCCcCCCCCCc
Confidence 455888878888887 99999999998764 322 23333222 22345676 69999999888887766554
No 99
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.80 E-value=4e-08 Score=105.72 Aligned_cols=38 Identities=29% Similarity=0.476 Sum_probs=34.9
Q ss_pred CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCC
Q psy760 68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN 106 (511)
Q Consensus 68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~ 106 (511)
..+||||||||.+|+++|..||+ .|++|+||||.....
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~-~G~~V~VlE~~~~~G 39 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLAR-AGLKVTVLEKNDRVG 39 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHh-CCCEEEEEEecCCCC
Confidence 36999999999999999999999 899999999987664
No 100
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.79 E-value=1.1e-07 Score=100.63 Aligned_cols=41 Identities=27% Similarity=0.469 Sum_probs=37.3
Q ss_pred cCCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCCc
Q psy760 66 LLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNY 107 (511)
Q Consensus 66 ~~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~~ 107 (511)
|.++|||||||+|.+||++|..||+ .|++||+|||.+..+.
T Consensus 1 m~~~~DViViGtGL~e~ilAa~Ls~-~GkkVLhlD~n~~yGG 41 (443)
T PTZ00363 1 MDETYDVIVCGTGLKECILSGLLSV-NGKKVLHMDRNPYYGG 41 (443)
T ss_pred CCCcceEEEECCChHHHHHHhhhhh-CCCEEEEecCCCCcCc
Confidence 4678999999999999999999999 8999999999987653
No 101
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.76 E-value=6.4e-08 Score=96.52 Aligned_cols=34 Identities=44% Similarity=0.884 Sum_probs=32.2
Q ss_pred ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760 70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104 (511)
Q Consensus 70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~ 104 (511)
|||+|||||++|+++|+.|++ .|.+|+||||...
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~-~g~~v~vie~~~~ 34 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLAD-KGLRVLLLEKKSF 34 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHH-CCCeEEEEeccCC
Confidence 799999999999999999999 7999999999864
No 102
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.74 E-value=2.2e-08 Score=95.99 Aligned_cols=83 Identities=17% Similarity=0.085 Sum_probs=52.7
Q ss_pred CCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHHhcCCCCcccccc-----------
Q psy760 279 CNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLND----------- 347 (511)
Q Consensus 279 ~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~~SGIGp~~~L~~----------- 347 (511)
.+++|+++++|++|...++ ...+..++......++ .|||+.=+-+++.||--+.++-+..|+.
T Consensus 116 tdL~V~~~~rVt~v~~~~~-----~W~l~~~~g~~~~~~d-~vvla~PAPQ~~~LLt~~~~~~p~~l~~~~a~V~y~Pc~ 189 (331)
T COG3380 116 TDLTVVLETRVTEVARTDN-----DWTLHTDDGTRHTQFD-DVVLAIPAPQTATLLTTDADDLPAALRAALADVVYAPCW 189 (331)
T ss_pred ccchhhhhhhhhhheecCC-----eeEEEecCCCcccccc-eEEEecCCCcchhhcCcccccchHHHHHhhccceehhHH
Confidence 4789999999999987653 5666653333356676 6999999877777775433332222221
Q ss_pred ---CCCCccccCc-cchhhhhccc
Q psy760 348 ---LNIPVIKNLR-VGENLQEHLA 367 (511)
Q Consensus 348 ---~gi~vv~~~P-VG~nl~DH~~ 367 (511)
+|.+...+.| -|-.+.+|+.
T Consensus 190 s~~lg~~q~l~~P~~G~~vdg~~l 213 (331)
T COG3380 190 SAVLGYPQPLDRPWPGNFVDGHPL 213 (331)
T ss_pred HHHhcCCccCCCCCCCcccCCCee
Confidence 3555556666 6655566654
No 103
>KOG2415|consensus
Probab=98.73 E-value=2.9e-08 Score=100.01 Aligned_cols=74 Identities=11% Similarity=0.159 Sum_probs=54.8
Q ss_pred ccchhHHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEE-----CC-------eEEEEEeCcEEEEccCCCCc-
Q psy760 264 RRSSAKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATI-----KG-------IDHKILARKEVILSAGAFNS- 330 (511)
Q Consensus 264 r~~~~~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~-----~g-------~~~~v~A~k~VILAAGa~~S- 330 (511)
+..-...||...++..|++|..+..+.+++++++ +.|.||.+.+ +| +-..++|+ ..|.|-|.-++
T Consensus 181 ~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~ed-gsVkGiaT~D~GI~k~G~pKd~FerGme~hak-~TifAEGc~G~L 258 (621)
T KOG2415|consen 181 SLGQLVRWLGEKAEELGVEIYPGFAASEVLYDED-GSVKGIATNDVGISKDGAPKDTFERGMEFHAK-VTIFAEGCHGSL 258 (621)
T ss_pred EHHHHHHHHHHHHHhhCceeccccchhheeEcCC-CcEeeEeeccccccCCCCccccccccceecce-eEEEeccccchh
Confidence 3445667888888999999999999999999986 7899987653 22 12468885 78898887554
Q ss_pred -HHHHHhcCC
Q psy760 331 -PKLLMLSGI 339 (511)
Q Consensus 331 -P~LL~~SGI 339 (511)
-|++..-++
T Consensus 259 skqi~kkf~L 268 (621)
T KOG2415|consen 259 SKQIIKKFDL 268 (621)
T ss_pred HHHHHHHhCc
Confidence 456665443
No 104
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.72 E-value=1.5e-08 Score=104.35 Aligned_cols=47 Identities=30% Similarity=0.463 Sum_probs=36.0
Q ss_pred hCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCc
Q psy760 277 KRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNS 330 (511)
Q Consensus 277 ~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~S 330 (511)
..+|++|+ +.+|++|..++ +++.||... +|. .+.|+ .||+|+|+|.+
T Consensus 107 ~~~nl~i~-~~~V~~l~~e~--~~v~GV~~~-~g~--~~~a~-~vVlaTGtfl~ 153 (392)
T PF01134_consen 107 SHPNLTII-QGEVTDLIVEN--GKVKGVVTK-DGE--EIEAD-AVVLATGTFLN 153 (392)
T ss_dssp TSTTEEEE-ES-EEEEEECT--TEEEEEEET-TSE--EEEEC-EEEE-TTTGBT
T ss_pred cCCCeEEE-EcccceEEecC--CeEEEEEeC-CCC--EEecC-EEEEecccccC
Confidence 45899996 67999999987 899999864 344 68897 79999999443
No 105
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=98.71 E-value=1.5e-07 Score=101.63 Aligned_cols=59 Identities=20% Similarity=0.241 Sum_probs=45.2
Q ss_pred hHHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHH
Q psy760 268 AKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPK 332 (511)
Q Consensus 268 ~~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~ 332 (511)
....|...+++.|++|+++++|++|..++ +++.||++.+ ++ ++.|+ .||+|+|...+-+
T Consensus 231 l~~~L~~~~~~~G~~i~~~~~V~~I~~~~--~~~~gv~~~~-g~--~~~ad-~vV~a~~~~~~~~ 289 (493)
T TIGR02730 231 IAESLVKGLEKHGGQIRYRARVTKIILEN--GKAVGVKLAD-GE--KIYAK-RIVSNATRWDTFG 289 (493)
T ss_pred HHHHHHHHHHHCCCEEEeCCeeeEEEecC--CcEEEEEeCC-CC--EEEcC-EEEECCChHHHHH
Confidence 34445566778899999999999999876 6888998754 33 57897 6999999855543
No 106
>PRK06185 hypothetical protein; Provisional
Probab=98.70 E-value=1e-07 Score=100.16 Aligned_cols=66 Identities=20% Similarity=0.206 Sum_probs=46.6
Q ss_pred hhHhhh-hCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHHhcCCCC
Q psy760 271 YIDPIK-KRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGP 341 (511)
Q Consensus 271 ~L~~~~-~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~~SGIGp 341 (511)
+|...+ +..|++++.++.|+++..++ +++++|.+...+.+.+++|+ -||.|.|+ +|. +-...|+..
T Consensus 113 ~L~~~~~~~~~v~i~~~~~v~~~~~~~--~~v~~v~~~~~~g~~~i~a~-~vI~AdG~-~S~-vr~~~gi~~ 179 (407)
T PRK06185 113 FLAEEASAYPNFTLRMGAEVTGLIEEG--GRVTGVRARTPDGPGEIRAD-LVVGADGR-HSR-VRALAGLEV 179 (407)
T ss_pred HHHHHHhhCCCcEEEeCCEEEEEEEeC--CEEEEEEEEcCCCcEEEEeC-EEEECCCC-chH-HHHHcCCCc
Confidence 444434 34699999999999998876 67778877653333478996 68888887 443 556667654
No 107
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.65 E-value=2.9e-07 Score=97.01 Aligned_cols=39 Identities=38% Similarity=0.485 Sum_probs=35.2
Q ss_pred ccCCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760 65 DLLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104 (511)
Q Consensus 65 ~~~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~ 104 (511)
.+..+|||+|||||++|+++|..|++ .|++|+|+||.+.
T Consensus 14 ~~~~~~dV~IvGaG~aGl~~A~~L~~-~G~~v~v~E~~~~ 52 (415)
T PRK07364 14 TRSLTYDVAIVGGGIVGLTLAAALKD-SGLRIALIEAQPA 52 (415)
T ss_pred CCccccCEEEECcCHHHHHHHHHHhc-CCCEEEEEecCCc
Confidence 34557999999999999999999999 8999999999864
No 108
>KOG2844|consensus
Probab=98.62 E-value=3.3e-07 Score=97.36 Aligned_cols=201 Identities=16% Similarity=0.146 Sum_probs=110.0
Q ss_pred ccCCcccEEEECCCcHHHHHHHHHhcCCCCe-EEEEcCCCCCCcccccccccccccCCCCcCCCccccccccccccCCCC
Q psy760 65 DLLLEYDFIIVGAGPGGCTVANRLSEIPHWK-ILLLEAGHYFNYLVDIPVLNTNLILSPLNWGYKTEKEDCRACLGLKGQ 143 (511)
Q Consensus 65 ~~~~~~DvIVVGgG~aGl~aA~~LAe~~G~~-VLVLEaG~~~~~~~~ip~~~~~~~~~~~~w~~~t~p~~~~~~~~~~~~ 143 (511)
..+...|+||||||.+|+.+|++||+ .|.+ ++++|+...-.
T Consensus 35 ~~~~~A~vvViggG~~g~~~~yhlak-~g~k~avlle~~~lts------------------------------------- 76 (856)
T KOG2844|consen 35 PLPSTADVVVIGGGSLGCSTAYHLAK-RGMKGAVLLERSRLTS------------------------------------- 76 (856)
T ss_pred cCCCcccEEEEcCCchhHHHHHHHHH-ccccceEEEeeeeecc-------------------------------------
Confidence 45567999999999999999999999 8998 55555542110
Q ss_pred ccccCCcceecccccccccccc--cCCcccchHHhhcCCCCCChhchHHHHHHHHhhhcccccCCCCCCCCcccccccCC
Q psy760 144 RCPWPSGKGVGGTSLINTMLYT--RGNKRNYDDWAKLGNYGWSYNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTE 221 (511)
Q Consensus 144 ~~~~~rGk~lGGsS~~n~~~~~--r~~~~d~~~w~~~g~~~w~~~~l~~y~~k~e~~~~~~~~~~~~~g~~G~l~v~~~~ 221 (511)
|++.+.+++.. |+++.+.+..+. +-...+.+.|+.... ..-++ ..|.+.+....
T Consensus 77 -----------gttwhtagl~~~lr~~dv~~qlia~---------~~~~l~~~leeEtgl---~tGwi-q~G~~~lAs~~ 132 (856)
T KOG2844|consen 77 -----------GTTWHTAGLLWQLFPSDVELQLIAH---------TSRVLYRELEEETGL---HTGWI-QNGGIFLASNR 132 (856)
T ss_pred -----------ccccccccceeeccCCchhHHHHHH---------HHHHHHHHHHHhcCC---Cccee-cCCceEEecCH
Confidence 23333333333 333333333321 112234444443322 11122 23444444443
Q ss_pred CCChHHHHHHHHHHHcCCCCCCCC------------CCCccceeecccccCCCc-ccchhHHhhHhhhhCCCcEEEeCce
Q psy760 222 YNTPMLDAFLQAGMEAGYPLVDYN------------GKTQTGFARAQATLHKRS-RRSSAKDYIDPIKKRCNLTVKDSSF 288 (511)
Q Consensus 222 ~~~~~~~~~~~a~~~~G~~~~~~~------------~~~~~G~~~~~~~~~~g~-r~~~~~~~L~~~~~r~gv~v~~~t~ 288 (511)
......+.++......|.+..-+. -....|.-+.|. +|. ........|..+|++.|+.|+.+|.
T Consensus 133 ~R~de~kR~~S~g~a~g~e~~lLsPee~~~~~pLLn~d~v~g~Ly~P~---DG~~DP~~lC~ala~~A~~~GA~viE~cp 209 (856)
T KOG2844|consen 133 QRLDEYKRLMSRGKAHGVESELLSPEETQELFPLLNVDDVYGGLYSPG---DGVMDPAGLCQALARAASALGALVIENCP 209 (856)
T ss_pred HHHHHHHHHHHhhhhccceeeecCHHHHHHhCcccchhHheeeeecCC---CcccCHHHHHHHHHHHHHhcCcEEEecCC
Confidence 333344455555555555432111 111222222221 111 1122223455567899999999999
Q ss_pred EEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHHhcC
Q psy760 289 VKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSG 338 (511)
Q Consensus 289 V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~~SG 338 (511)
|++|..+. ++..||++..+ .|++. .||-|||.+ .-..=.++|
T Consensus 210 V~~i~~~~--~~~~gVeT~~G----~iet~-~~VNaaGvW-Ar~Vg~m~g 251 (856)
T KOG2844|consen 210 VTGLHVET--DKFGGVETPHG----SIETE-CVVNAAGVW-AREVGAMAG 251 (856)
T ss_pred cceEEeec--CCccceeccCc----ceecc-eEEechhHH-HHHhhhhcC
Confidence 99998876 34448987654 58897 599999964 333445555
No 109
>KOG4254|consensus
Probab=98.61 E-value=3.1e-07 Score=93.71 Aligned_cols=61 Identities=23% Similarity=0.231 Sum_probs=49.5
Q ss_pred chhHHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHH
Q psy760 266 SSAKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPK 332 (511)
Q Consensus 266 ~~~~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~ 332 (511)
++....+.+.+++.|.+|.+++.|.+|+.|+ ++|+||.+.++ + ++++ |.||-.|+-+.|=.
T Consensus 264 Gavs~aia~~~~~~GaeI~tka~Vq~Illd~--gka~GV~L~dG-~--ev~s-k~VvSNAt~~~Tf~ 324 (561)
T KOG4254|consen 264 GAVSFAIAEGAKRAGAEIFTKATVQSILLDS--GKAVGVRLADG-T--EVRS-KIVVSNATPWDTFE 324 (561)
T ss_pred hHHHHHHHHHHHhccceeeehhhhhheeccC--CeEEEEEecCC-c--EEEe-eeeecCCchHHHHH
Confidence 4444456677899999999999999999998 89999998764 3 5777 57888888887763
No 110
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.60 E-value=3e-07 Score=96.25 Aligned_cols=37 Identities=27% Similarity=0.330 Sum_probs=33.9
Q ss_pred CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760 67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104 (511)
Q Consensus 67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~ 104 (511)
...+||+|||||++|+++|+.|++ .|.+|+||||.+.
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~-~G~~v~liE~~~~ 40 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALAD-AGLSVALVEGREP 40 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhc-CCCEEEEEeCCCC
Confidence 456999999999999999999999 8999999999853
No 111
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.60 E-value=5.1e-07 Score=94.49 Aligned_cols=32 Identities=38% Similarity=0.729 Sum_probs=31.0
Q ss_pred ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760 70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG 102 (511)
Q Consensus 70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG 102 (511)
|||||||||+||+++|+.|++ .|.+|+|||+.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~-~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLAR-AGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHh-CCCcEEEEECC
Confidence 799999999999999999999 89999999997
No 112
>KOG2853|consensus
Probab=98.60 E-value=1.2e-06 Score=86.50 Aligned_cols=41 Identities=22% Similarity=0.387 Sum_probs=35.0
Q ss_pred ccCCcccEEEECCCcHHHHHHHHHhc---CCCCeEEEEcCCCCC
Q psy760 65 DLLLEYDFIIVGAGPGGCTVANRLSE---IPHWKILLLEAGHYF 105 (511)
Q Consensus 65 ~~~~~~DvIVVGgG~aGl~aA~~LAe---~~G~~VLVLEaG~~~ 105 (511)
..+.+.||+|||||..|+++|+.|.| +.|.+|+|+|+....
T Consensus 82 ~f~~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddty 125 (509)
T KOG2853|consen 82 VFPYHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTY 125 (509)
T ss_pred ccccccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcc
Confidence 44567999999999999999999976 367999999998654
No 113
>KOG1298|consensus
Probab=98.56 E-value=4.3e-07 Score=91.01 Aligned_cols=36 Identities=31% Similarity=0.377 Sum_probs=33.3
Q ss_pred cCCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760 66 LLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG 102 (511)
Q Consensus 66 ~~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG 102 (511)
....+||||||+|.+|+++|+.|++ .|+||+||||.
T Consensus 42 ~~~~~DvIIVGAGV~GsaLa~~L~k-dGRrVhVIERD 77 (509)
T KOG1298|consen 42 NDGAADVIIVGAGVAGSALAYALAK-DGRRVHVIERD 77 (509)
T ss_pred cCCcccEEEECCcchHHHHHHHHhh-CCcEEEEEecc
Confidence 3457999999999999999999999 79999999996
No 114
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.56 E-value=8.9e-07 Score=94.32 Aligned_cols=36 Identities=22% Similarity=0.393 Sum_probs=33.4
Q ss_pred CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
..+|||||||||+||+++|..||+ .|++|+|||+..
T Consensus 37 ~~~~DViIVGaGPAG~~aA~~LA~-~G~~VlllEr~~ 72 (450)
T PLN00093 37 GRKLRVAVIGGGPAGACAAETLAK-GGIETFLIERKL 72 (450)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHh-CCCcEEEEecCC
Confidence 457999999999999999999999 899999999974
No 115
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.54 E-value=1.9e-07 Score=101.02 Aligned_cols=61 Identities=15% Similarity=0.097 Sum_probs=44.6
Q ss_pred hHHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHH
Q psy760 268 AKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLL 334 (511)
Q Consensus 268 ~~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL 334 (511)
....|...+++.|++|++++.|++|..++ +++++|++.. ++ ++.|+ .||+|++...+...|
T Consensus 221 l~~al~~~~~~~G~~i~~~~~V~~i~~~~--~~~~~V~~~~-g~--~~~ad-~VI~a~~~~~~~~~l 281 (502)
T TIGR02734 221 LVAAMAKLAEDLGGELRLNAEVIRIETEG--GRATAVHLAD-GE--RLDAD-AVVSNADLHHTYRRL 281 (502)
T ss_pred HHHHHHHHHHHCCCEEEECCeEEEEEeeC--CEEEEEEECC-CC--EEECC-EEEECCcHHHHHHHh
Confidence 33445555677899999999999999876 6788887643 33 57897 599988875555444
No 116
>PRK06847 hypothetical protein; Provisional
Probab=98.53 E-value=6.6e-07 Score=92.94 Aligned_cols=37 Identities=27% Similarity=0.296 Sum_probs=33.5
Q ss_pred CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760 67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104 (511)
Q Consensus 67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~ 104 (511)
.+..||+|||||++|+++|+.|++ .|.+|+|+|+.+.
T Consensus 2 ~~~~~V~IVGaG~aGl~~A~~L~~-~g~~v~v~E~~~~ 38 (375)
T PRK06847 2 AAVKKVLIVGGGIGGLSAAIALRR-AGIAVDLVEIDPE 38 (375)
T ss_pred CCcceEEEECCCHHHHHHHHHHHh-CCCCEEEEecCCC
Confidence 346899999999999999999999 8999999999753
No 117
>PRK07208 hypothetical protein; Provisional
Probab=98.53 E-value=2e-06 Score=92.45 Aligned_cols=41 Identities=29% Similarity=0.436 Sum_probs=36.1
Q ss_pred cCCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCCc
Q psy760 66 LLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNY 107 (511)
Q Consensus 66 ~~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~~ 107 (511)
|.+..||||||||.+|+++|++|++ .|++|+|+|+.+....
T Consensus 1 ~~~~~~vvIiGaGisGL~aA~~L~~-~g~~v~v~E~~~~~GG 41 (479)
T PRK07208 1 MTNKKSVVIIGAGPAGLTAAYELLK-RGYPVTVLEADPVVGG 41 (479)
T ss_pred CCCCCcEEEECcCHHHHHHHHHHHH-CCCcEEEEecCCCCCc
Confidence 3456899999999999999999999 7999999999876543
No 118
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.53 E-value=1e-06 Score=95.43 Aligned_cols=33 Identities=33% Similarity=0.554 Sum_probs=31.3
Q ss_pred ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
|||||||+|.+|+.+|..+++ .|.+|+|+|+..
T Consensus 1 yDViVIGaG~AGl~aA~ala~-~G~~v~Lie~~~ 33 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAAR-MGAKTLLLTLNL 33 (617)
T ss_pred CeEEEECccHHHHHHHHHHHH-CCCCEEEEeccc
Confidence 799999999999999999999 899999999874
No 119
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.53 E-value=2.5e-07 Score=98.63 Aligned_cols=33 Identities=30% Similarity=0.580 Sum_probs=31.6
Q ss_pred cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760 69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG 102 (511)
Q Consensus 69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG 102 (511)
+||+||||||+||+.+|.++++ .|++|+|+|++
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~-~G~~V~lie~~ 34 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAAN-HGAKVAIAEEP 34 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHh-CCCcEEEEecC
Confidence 5999999999999999999999 89999999985
No 120
>KOG2404|consensus
Probab=98.52 E-value=2e-07 Score=91.20 Aligned_cols=49 Identities=29% Similarity=0.324 Sum_probs=39.9
Q ss_pred CcEEEeCceEEEEEEcCCCCcEEEEEEEE-CCeEEEEEeCcEEEEccCCCCcH
Q psy760 280 NLTVKDSSFVKKILIDPVTKKACGVLATI-KGIDHKILARKEVILSAGAFNSP 331 (511)
Q Consensus 280 gv~v~~~t~V~~I~~d~~~~ra~GV~~~~-~g~~~~v~A~k~VILAAGa~~SP 331 (511)
-++|.++++|++|+.++ ++|.||++.+ +|+...+..+ .||+|+|+|.-.
T Consensus 159 ~~ki~~nskvv~il~n~--gkVsgVeymd~sgek~~~~~~-~VVlatGGf~ys 208 (477)
T KOG2404|consen 159 LVKILLNSKVVDILRNN--GKVSGVEYMDASGEKSKIIGD-AVVLATGGFGYS 208 (477)
T ss_pred HHhhhhcceeeeeecCC--CeEEEEEEEcCCCCccceecC-ceEEecCCcCcC
Confidence 48999999999999554 8999999984 4555566676 699999999863
No 121
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.51 E-value=1.1e-06 Score=92.31 Aligned_cols=33 Identities=30% Similarity=0.538 Sum_probs=31.2
Q ss_pred ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
+||||||||+||+++|+.||+ .|++|+|||+..
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~-~G~~V~llE~~~ 33 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLAS-AGIQTFLLERKP 33 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHh-CCCcEEEEecCC
Confidence 699999999999999999999 899999999864
No 122
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.51 E-value=1.9e-07 Score=95.36 Aligned_cols=36 Identities=36% Similarity=0.518 Sum_probs=31.4
Q ss_pred cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCC
Q psy760 69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 105 (511)
Q Consensus 69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~ 105 (511)
+|||||||||++|+++|+.|++ .|++|+|+||.+..
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~-~G~~v~i~E~~~~~ 36 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALAR-AGIDVTIIERRPDP 36 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHH-TTCEEEEEESSSSC
T ss_pred CceEEEECCCHHHHHHHHHHHh-cccccccchhcccc
Confidence 5899999999999999999999 89999999998653
No 123
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.51 E-value=1.1e-06 Score=96.39 Aligned_cols=60 Identities=13% Similarity=0.153 Sum_probs=48.0
Q ss_pred HHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEE--CCeEEEEEeCcEEEEccCCCCc
Q psy760 269 KDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNS 330 (511)
Q Consensus 269 ~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~--~g~~~~v~A~k~VILAAGa~~S 330 (511)
...|...+.+.|++|+.++.+++|+.+++ ++|+||.... +++.+.++|+ .||||||++..
T Consensus 129 ~~~L~~~~~~~gi~i~~~~~~~~Li~~~~-g~v~Gv~~~~~~~g~~~~i~Ak-aVVLATGG~~~ 190 (570)
T PRK05675 129 LHTLYQGNLKNGTTFLNEWYAVDLVKNQD-GAVVGVIAICIETGETVYIKSK-ATVLATGGAGR 190 (570)
T ss_pred HHHHHHHHhccCCEEEECcEEEEEEEcCC-CeEEEEEEEEcCCCcEEEEecC-eEEECCCCccc
Confidence 33454556678999999999999998643 7999998753 5677788996 89999999874
No 124
>PLN02985 squalene monooxygenase
Probab=98.50 E-value=1.8e-06 Score=93.56 Aligned_cols=36 Identities=33% Similarity=0.446 Sum_probs=33.3
Q ss_pred CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
..++||||||||++|+++|..|++ .|++|+|+||..
T Consensus 41 ~~~~DViIVGAG~aGlalA~aLa~-~G~~V~vlEr~~ 76 (514)
T PLN02985 41 DGATDVIIVGAGVGGSALAYALAK-DGRRVHVIERDL 76 (514)
T ss_pred CCCceEEEECCCHHHHHHHHHHHH-cCCeEEEEECcC
Confidence 457999999999999999999999 899999999974
No 125
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.49 E-value=1.4e-06 Score=94.02 Aligned_cols=62 Identities=16% Similarity=0.025 Sum_probs=43.6
Q ss_pred hHHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEEC--CeEEEEEeCcEEEEccCCCCcHH
Q psy760 268 AKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIK--GIDHKILARKEVILSAGAFNSPK 332 (511)
Q Consensus 268 ~~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~--g~~~~v~A~k~VILAAGa~~SP~ 332 (511)
....|...+++.|++|+++++|++|+.++ ++++||.+..+ ++..++.|+ .||+++....+.+
T Consensus 234 l~~aL~~~~~~~G~~i~~~~~V~~I~~~~--~~~~gv~~~~~~~~~~~~~~ad-~VI~~~~~~~~~~ 297 (492)
T TIGR02733 234 LSDRLVEALKRDGGNLLTGQRVTAIHTKG--GRAGWVVVVDSRKQEDLNVKAD-DVVANLPPQSLLE 297 (492)
T ss_pred HHHHHHHHHHhcCCEEeCCceEEEEEEeC--CeEEEEEEecCCCCceEEEECC-EEEECCCHHHHHH
Confidence 33345555667899999999999999886 67888877643 112368897 5888887643333
No 126
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.49 E-value=2.9e-06 Score=87.21 Aligned_cols=41 Identities=37% Similarity=0.495 Sum_probs=35.8
Q ss_pred ccCCcccEEEECCCcHHHHHHHHHhcC----CCCeEEEEcCCCCC
Q psy760 65 DLLLEYDFIIVGAGPGGCTVANRLSEI----PHWKILLLEAGHYF 105 (511)
Q Consensus 65 ~~~~~~DvIVVGgG~aGl~aA~~LAe~----~G~~VLVLEaG~~~ 105 (511)
.|...||+||||+|++|+.+|++++.+ +..+|+++|.|...
T Consensus 14 ~~~~~~~vvivgag~~g~f~a~~~s~~ar~~~~~~i~~vd~g~~~ 58 (486)
T COG2509 14 LMNAALDVVIVGAGPAGLFAAYELSGDARKVPILKIYVVDVGLDI 58 (486)
T ss_pred HhhhccceEEECCCchHHHHHHHHhhhcccCCceEEEEEEeccch
Confidence 556789999999999999999999974 37899999999754
No 127
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.49 E-value=4.5e-07 Score=97.36 Aligned_cols=36 Identities=22% Similarity=0.403 Sum_probs=33.1
Q ss_pred CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
...||+||||||++|+.+|.+|++ .|++|+|+|+.+
T Consensus 2 ~~~~DvvVIG~GpaG~~aA~~aa~-~G~~V~lie~~~ 37 (471)
T PRK06467 2 EIKTQVVVLGAGPAGYSAAFRAAD-LGLETVCVERYS 37 (471)
T ss_pred CccceEEEECCCHHHHHHHHHHHH-CCCcEEEEecCC
Confidence 346999999999999999999999 899999999864
No 128
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.49 E-value=8.1e-07 Score=92.88 Aligned_cols=35 Identities=29% Similarity=0.405 Sum_probs=32.8
Q ss_pred CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
++|||||||||++|+++|..|++ .|++|+|+|+.+
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~-~G~~V~liE~~~ 38 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQ-HGFSVAVLEHAA 38 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhc-CCCEEEEEcCCC
Confidence 46999999999999999999999 899999999975
No 129
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.48 E-value=2.9e-06 Score=87.97 Aligned_cols=65 Identities=22% Similarity=0.238 Sum_probs=47.8
Q ss_pred hHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEE--ECCeEEEEEeCcEEEEccCCCCcHHHHHhcCCC
Q psy760 272 IDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLAT--IKGIDHKILARKEVILSAGAFNSPKLLMLSGIG 340 (511)
Q Consensus 272 L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~--~~g~~~~v~A~k~VILAAGa~~SP~LL~~SGIG 340 (511)
+..+.++.|+++.++++|++|...++ ++ .-|.+. ..++..+++|+ -|+|.||+ ++=.||+.|||.
T Consensus 188 ~~~l~~~~~~~~~~~~eV~~i~r~~d-g~-W~v~~~~~~~~~~~~v~a~-FVfvGAGG-~aL~LLqksgi~ 254 (488)
T PF06039_consen 188 VEYLQKQKGFELHLNHEVTDIKRNGD-GR-WEVKVKDLKTGEKREVRAK-FVFVGAGG-GALPLLQKSGIP 254 (488)
T ss_pred HHHHHhCCCcEEEecCEeCeeEECCC-CC-EEEEEEecCCCCeEEEECC-EEEECCch-HhHHHHHHcCCh
Confidence 33334566999999999999998875 32 123332 34566799996 79999998 577899999984
No 130
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.48 E-value=1.1e-06 Score=92.06 Aligned_cols=35 Identities=26% Similarity=0.368 Sum_probs=32.7
Q ss_pred cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760 69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104 (511)
Q Consensus 69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~ 104 (511)
.+||+|||||++|+++|+.|++ .|++|+|+|+.+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~-~G~~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHL-AGIDSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHh-cCCCEEEEEcCCc
Confidence 4899999999999999999999 8999999999863
No 131
>PRK08244 hypothetical protein; Provisional
Probab=98.48 E-value=1.4e-06 Score=94.04 Aligned_cols=35 Identities=31% Similarity=0.493 Sum_probs=32.8
Q ss_pred cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760 69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104 (511)
Q Consensus 69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~ 104 (511)
++||+|||||++|+++|..|++ .|.+|+||||.+.
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~-~G~~v~viEr~~~ 36 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELAL-AGVKTCVIERLKE 36 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHH-CCCcEEEEecCCC
Confidence 4899999999999999999999 8999999999864
No 132
>PRK06184 hypothetical protein; Provisional
Probab=98.48 E-value=2.5e-06 Score=92.40 Aligned_cols=35 Identities=37% Similarity=0.484 Sum_probs=32.9
Q ss_pred cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760 69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104 (511)
Q Consensus 69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~ 104 (511)
++||+|||||++|+++|+.|++ .|.+|+||||.+.
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~-~Gi~v~viE~~~~ 37 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELAR-RGVSFRLIEKAPE 37 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHH-CCCcEEEEeCCCC
Confidence 5999999999999999999999 8999999999754
No 133
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.48 E-value=6.7e-07 Score=97.94 Aligned_cols=36 Identities=28% Similarity=0.507 Sum_probs=32.9
Q ss_pred CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
...|||||||||+||+.+|.+|++ .|++|+|+|++.
T Consensus 2 ~~~yDVvIIGgGpAGL~AA~~lar-~g~~V~liE~~~ 37 (555)
T TIGR03143 2 EEIYDLIIIGGGPAGLSAGIYAGR-AKLDTLIIEKDD 37 (555)
T ss_pred CCcCcEEEECCCHHHHHHHHHHHH-CCCCEEEEecCC
Confidence 346999999999999999999999 899999999863
No 134
>PRK11445 putative oxidoreductase; Provisional
Probab=98.47 E-value=3.1e-06 Score=87.38 Aligned_cols=33 Identities=33% Similarity=0.682 Sum_probs=31.0
Q ss_pred ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760 70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104 (511)
Q Consensus 70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~ 104 (511)
|||+|||||+||+++|..|++ . .+|+|||+.+.
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~-~-~~V~liE~~~~ 34 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAG-K-MKVIAIDKKHQ 34 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhc-c-CCEEEEECCCc
Confidence 899999999999999999999 7 99999999863
No 135
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.46 E-value=9.2e-07 Score=94.39 Aligned_cols=34 Identities=41% Similarity=0.712 Sum_probs=32.1
Q ss_pred CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760 68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG 102 (511)
Q Consensus 68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG 102 (511)
++||+||||||++|+.+|.+|++ .|++|+|+|++
T Consensus 1 ~~yDvvVIG~GpaG~~aA~~aa~-~G~~V~liE~~ 34 (450)
T TIGR01421 1 KHYDYLVIGGGSGGIASARRAAE-HGAKALLVEAK 34 (450)
T ss_pred CCCCEEEECcCHHHHHHHHHHHH-CCCcEEEeccc
Confidence 36999999999999999999999 89999999986
No 136
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.45 E-value=2.1e-06 Score=90.10 Aligned_cols=35 Identities=26% Similarity=0.440 Sum_probs=31.8
Q ss_pred cccEEEECCCcHHHHHHHHHhcCC--CCeEEEEcCCCC
Q psy760 69 EYDFIIVGAGPGGCTVANRLSEIP--HWKILLLEAGHY 104 (511)
Q Consensus 69 ~~DvIVVGgG~aGl~aA~~LAe~~--G~~VLVLEaG~~ 104 (511)
.|||+|||||++|+++|..|++ . |++|+|+||.+.
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~-~g~g~~v~liE~~~~ 37 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQ-AAPHLPVTVVDAAPA 37 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhc-CCCCCEEEEEeCCCc
Confidence 3899999999999999999999 5 599999999863
No 137
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.45 E-value=1.8e-06 Score=90.85 Aligned_cols=34 Identities=38% Similarity=0.585 Sum_probs=32.3
Q ss_pred cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
+|||+|||||++|+++|+.|++ .|++|+|+|+.+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~-~G~~v~viE~~~ 35 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQG-SGLEVLLLDGGP 35 (405)
T ss_pred CccEEEECccHHHHHHHHHHhc-CCCEEEEEcCCC
Confidence 5899999999999999999999 899999999985
No 138
>PRK07045 putative monooxygenase; Reviewed
Probab=98.45 E-value=1.6e-06 Score=90.73 Aligned_cols=36 Identities=22% Similarity=0.326 Sum_probs=33.6
Q ss_pred CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760 68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104 (511)
Q Consensus 68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~ 104 (511)
..+||+|||||++|+++|+.|++ .|++|+|+||.+.
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~-~G~~v~v~E~~~~ 39 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGA-RGHSVTVVERAAR 39 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHh-cCCcEEEEeCCCc
Confidence 46899999999999999999999 8999999999864
No 139
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.45 E-value=1e-06 Score=91.95 Aligned_cols=36 Identities=25% Similarity=0.500 Sum_probs=33.4
Q ss_pred CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760 68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104 (511)
Q Consensus 68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~ 104 (511)
..+||||||||++|+++|+.|++ .|.+|+|+|+++.
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~-~G~~v~v~E~~~~ 39 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQ-SGLRVALLAPRAP 39 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHh-CCCeEEEEecCCC
Confidence 35899999999999999999999 8999999999864
No 140
>PRK06116 glutathione reductase; Validated
Probab=98.45 E-value=5.2e-07 Score=96.30 Aligned_cols=35 Identities=40% Similarity=0.641 Sum_probs=32.7
Q ss_pred CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760 67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG 102 (511)
Q Consensus 67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG 102 (511)
..+||+||||||+||+.+|.+|++ .|++|+|+|++
T Consensus 2 ~~~~DvvVIG~GpaG~~aA~~~a~-~G~~V~liE~~ 36 (450)
T PRK06116 2 TKDYDLIVIGGGSGGIASANRAAM-YGAKVALIEAK 36 (450)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHH-CCCeEEEEecc
Confidence 346999999999999999999999 89999999986
No 141
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.44 E-value=1.3e-06 Score=94.60 Aligned_cols=67 Identities=16% Similarity=0.266 Sum_probs=42.6
Q ss_pred hHHhhHhhhhCCCc--EEEeCceEEEEEEcCCCCc--EEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHH
Q psy760 268 AKDYIDPIKKRCNL--TVKDSSFVKKILIDPVTKK--ACGVLATIKGIDHKILARKEVILSAGAFNSPKLLM 335 (511)
Q Consensus 268 ~~~~L~~~~~r~gv--~v~~~t~V~~I~~d~~~~r--a~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~ 335 (511)
...||...+++-++ .|..||+|++|...++... -.-|.+..+++..+-..+ .||+|+|.+..|.+=.
T Consensus 86 v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD-~VvvatG~~~~P~~P~ 156 (531)
T PF00743_consen 86 VLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFD-AVVVATGHFSKPNIPE 156 (531)
T ss_dssp HHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEEC-EEEEEE-SSSCESB--
T ss_pred HHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeC-eEEEcCCCcCCCCCCh
Confidence 44577777776665 6899999999987653111 112333344555455566 6999999999997654
No 142
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.43 E-value=1e-06 Score=94.43 Aligned_cols=35 Identities=23% Similarity=0.533 Sum_probs=32.7
Q ss_pred CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
..||+||||||++|+.+|.+|++ .|++|+|+|+++
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~-~G~~v~liE~~~ 38 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAK-LGKRVAVIERYR 38 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHh-CCCEEEEEeccc
Confidence 45999999999999999999999 899999999864
No 143
>PRK06370 mercuric reductase; Validated
Probab=98.43 E-value=7.2e-07 Score=95.60 Aligned_cols=37 Identities=35% Similarity=0.521 Sum_probs=33.7
Q ss_pred cCCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 66 LLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 66 ~~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
|..+||+||||||+||+.+|.+|++ .|++|+|+|++.
T Consensus 2 ~~~~~DvvVIG~GpaG~~aA~~aa~-~G~~v~lie~~~ 38 (463)
T PRK06370 2 PAQRYDAIVIGAGQAGPPLAARAAG-LGMKVALIERGL 38 (463)
T ss_pred CCccccEEEECCCHHHHHHHHHHHh-CCCeEEEEecCc
Confidence 4457999999999999999999999 899999999863
No 144
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.43 E-value=4.2e-06 Score=90.97 Aligned_cols=120 Identities=18% Similarity=0.155 Sum_probs=74.2
Q ss_pred cccccccCCCCChHHHHHHHHHHHcCCCCCCCC-----------CCCccceeecccccCCCcccchhHHhhHhhhhCCCc
Q psy760 213 GFIGVDYTEYNTPMLDAFLQAGMEAGYPLVDYN-----------GKTQTGFARAQATLHKRSRRSSAKDYIDPIKKRCNL 281 (511)
Q Consensus 213 G~l~v~~~~~~~~~~~~~~~a~~~~G~~~~~~~-----------~~~~~G~~~~~~~~~~g~r~~~~~~~L~~~~~r~gv 281 (511)
|.+.+..+.........+++.+++.|++...++ .....|..+++...- ........+...+.+.|+
T Consensus 67 g~L~va~~~~~~~~~~~~~~~~~~~gi~~~~l~~~e~~~~~P~l~~~~~ga~~~~dg~v---dp~~l~~al~~~A~~~Ga 143 (516)
T TIGR03377 67 GGLFITLPEDDLEFQKQFLAACREAGIPAEEIDPAEALRLEPNLNPDLIGAVKVPDGTV---DPFRLVAANVLDAQEHGA 143 (516)
T ss_pred CceEEecCcccHHHHHHHHHHHHHCCCCceEECHHHHHHHCCCCChhheEEEEeCCcEE---CHHHHHHHHHHHHHHcCC
Confidence 445555554444555667777778887642111 111223333221111 111112223344677899
Q ss_pred EEEeCceEEEEEEcCCCCcEEEEEEEE--CCeEEEEEeCcEEEEccCCCCcHHHHHhcCC
Q psy760 282 TVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNSPKLLMLSGI 339 (511)
Q Consensus 282 ~v~~~t~V~~I~~d~~~~ra~GV~~~~--~g~~~~v~A~k~VILAAGa~~SP~LL~~SGI 339 (511)
+|+++++|++|..++ ++++||++.+ +++..+|+|+ .||+|||+ ++.+++...|+
T Consensus 144 ~i~~~t~V~~i~~~~--~~v~gv~v~~~~~g~~~~i~a~-~VVnAaG~-wa~~l~~~~g~ 199 (516)
T TIGR03377 144 RIFTYTKVTGLIREG--GRVTGVKVEDHKTGEEERIEAQ-VVINAAGI-WAGRIAEYAGL 199 (516)
T ss_pred EEEcCcEEEEEEEEC--CEEEEEEEEEcCCCcEEEEEcC-EEEECCCc-chHHHHHhcCC
Confidence 999999999998876 6888998863 4555689997 69999997 58888887775
No 145
>PLN02697 lycopene epsilon cyclase
Probab=98.43 E-value=1.4e-06 Score=94.08 Aligned_cols=35 Identities=20% Similarity=0.392 Sum_probs=32.3
Q ss_pred CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760 67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG 102 (511)
Q Consensus 67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG 102 (511)
...|||||||||+||+++|..|++ .|++|+|||++
T Consensus 106 ~~~~DVvIVGaGPAGLalA~~Lak-~Gl~V~LIe~~ 140 (529)
T PLN02697 106 DGTLDLVVIGCGPAGLALAAESAK-LGLNVGLIGPD 140 (529)
T ss_pred cCcccEEEECcCHHHHHHHHHHHh-CCCcEEEecCc
Confidence 346999999999999999999999 89999999975
No 146
>PRK06834 hypothetical protein; Provisional
Probab=98.43 E-value=3.2e-06 Score=91.09 Aligned_cols=35 Identities=26% Similarity=0.413 Sum_probs=32.8
Q ss_pred cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760 69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104 (511)
Q Consensus 69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~ 104 (511)
++||||||||++|+++|+.|++ .|.+|+||||.+.
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~-~G~~v~vlEr~~~ 37 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELAL-AGVDVAIVERRPN 37 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHH-CCCcEEEEecCCC
Confidence 5999999999999999999999 8999999999753
No 147
>PRK06126 hypothetical protein; Provisional
Probab=98.42 E-value=7.3e-06 Score=89.69 Aligned_cols=36 Identities=31% Similarity=0.390 Sum_probs=33.3
Q ss_pred CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
..++||+|||||++|+++|+.|++ .|++|+|+||.+
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~-~G~~v~viEr~~ 40 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGR-RGVDSILVERKD 40 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHH-CCCcEEEEeCCC
Confidence 346999999999999999999999 899999999875
No 148
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.42 E-value=3.4e-06 Score=88.00 Aligned_cols=62 Identities=13% Similarity=0.086 Sum_probs=47.8
Q ss_pred hHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHHhc
Q psy760 272 IDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLS 337 (511)
Q Consensus 272 L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~~S 337 (511)
|...+++.|++++.+++|+++..++ +++++|.+.. ++...++|+ .||||+|++-|..|+...
T Consensus 269 L~~~~~~~Gg~il~g~~V~~i~~~~--~~v~~V~t~~-g~~~~l~AD-~vVLAaGaw~S~gL~a~l 330 (419)
T TIGR03378 269 LKHRFEQLGGVMLPGDRVLRAEFEG--NRVTRIHTRN-HRDIPLRAD-HFVLASGSFFSNGLVAEF 330 (419)
T ss_pred HHHHHHHCCCEEEECcEEEEEEeeC--CeEEEEEecC-CccceEECC-EEEEccCCCcCHHHHhhc
Confidence 4445678899999999999999887 6788876543 323478998 599999998788886653
No 149
>PRK09126 hypothetical protein; Provisional
Probab=98.42 E-value=1.6e-06 Score=90.70 Aligned_cols=35 Identities=34% Similarity=0.591 Sum_probs=33.1
Q ss_pred cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760 69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104 (511)
Q Consensus 69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~ 104 (511)
+|||||||||++|+++|..|++ .|++|+|+||.+.
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~-~G~~v~v~E~~~~ 37 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAG-SGLKVTLIERQPL 37 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHh-CCCcEEEEeCCCc
Confidence 5999999999999999999999 8999999999864
No 150
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.42 E-value=7.5e-07 Score=93.20 Aligned_cols=33 Identities=39% Similarity=0.575 Sum_probs=31.8
Q ss_pred cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760 69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG 102 (511)
Q Consensus 69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG 102 (511)
.+||+|||||++|+++|..|++ .|++|+|||+.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~-~G~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALAR-AGLDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHh-CCCcEEEEccC
Confidence 5899999999999999999999 89999999998
No 151
>PRK08013 oxidoreductase; Provisional
Probab=98.41 E-value=8.8e-07 Score=93.07 Aligned_cols=35 Identities=29% Similarity=0.356 Sum_probs=33.0
Q ss_pred cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760 69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104 (511)
Q Consensus 69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~ 104 (511)
+|||+|||||++|+++|+.|++ .|++|+|||+.+.
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~-~G~~v~viE~~~~ 37 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQG-SGLRVAVLEQRVP 37 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhh-CCCEEEEEeCCCC
Confidence 5899999999999999999999 8999999999864
No 152
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.41 E-value=9.9e-07 Score=93.33 Aligned_cols=36 Identities=39% Similarity=0.729 Sum_probs=33.3
Q ss_pred CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
..+||+||||+|++|.++|.++|+ .|.+|+|+|+.+
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~-~G~kvalvE~~~ 37 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQ-LGLKVALVEKGE 37 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHh-CCCCEEEEeecC
Confidence 357999999999999999999999 798899999984
No 153
>PRK07190 hypothetical protein; Provisional
Probab=98.41 E-value=3.9e-06 Score=90.44 Aligned_cols=36 Identities=22% Similarity=0.245 Sum_probs=33.2
Q ss_pred CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760 68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104 (511)
Q Consensus 68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~ 104 (511)
..+||||||||++|+++|+.|++ .|.+|+||||.+.
T Consensus 4 ~~~dVlIVGAGPaGL~lA~~Lar-~Gi~V~llEr~~~ 39 (487)
T PRK07190 4 QVTDVVIIGAGPVGLMCAYLGQL-CGLNTVIVDKSDG 39 (487)
T ss_pred ccceEEEECCCHHHHHHHHHHHH-cCCCEEEEeCCCc
Confidence 35899999999999999999999 8999999999864
No 154
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.40 E-value=1.3e-06 Score=93.96 Aligned_cols=36 Identities=42% Similarity=0.738 Sum_probs=33.4
Q ss_pred cCCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760 66 LLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG 102 (511)
Q Consensus 66 ~~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG 102 (511)
|...||+||||||+||+.+|.+|++ .|++|+|+|++
T Consensus 1 ~~~~ydvvVIG~GpaG~~aA~~aa~-~G~~v~lie~~ 36 (472)
T PRK05976 1 MAKEYDLVIIGGGPGGYVAAIRAGQ-LGLKTALVEKG 36 (472)
T ss_pred CCccccEEEECCCHHHHHHHHHHHh-CCCeEEEEEcc
Confidence 3457999999999999999999999 89999999986
No 155
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.40 E-value=1.7e-06 Score=91.97 Aligned_cols=34 Identities=35% Similarity=0.633 Sum_probs=32.4
Q ss_pred cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
+||+||||||+||+.+|.+|++ .|++|+|+|+++
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~-~g~~V~liE~~~ 36 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLAS-AGKKVALVEESK 36 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHh-CCCEEEEEecCC
Confidence 6999999999999999999999 899999999975
No 156
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.40 E-value=1.2e-06 Score=91.58 Aligned_cols=34 Identities=41% Similarity=0.466 Sum_probs=31.6
Q ss_pred CcccEEEECCCcHHHHHHHHHhcCC---CCeEEEEcCC
Q psy760 68 LEYDFIIVGAGPGGCTVANRLSEIP---HWKILLLEAG 102 (511)
Q Consensus 68 ~~~DvIVVGgG~aGl~aA~~LAe~~---G~~VLVLEaG 102 (511)
..+||+|||||++|+++|+.|++ . |.+|+|+||.
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~-~~~~G~~v~v~E~~ 38 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSR-LSHGGLPVALIEAF 38 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhh-cccCCCEEEEEeCC
Confidence 35899999999999999999998 6 9999999995
No 157
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.40 E-value=4.7e-07 Score=94.79 Aligned_cols=34 Identities=35% Similarity=0.485 Sum_probs=31.1
Q ss_pred CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760 68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG 102 (511)
Q Consensus 68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG 102 (511)
.+|||||||||.||+-||...|+ -|.+++||--.
T Consensus 3 ~~~DVIVIGgGHAG~EAA~AaAR-mG~ktlLlT~~ 36 (621)
T COG0445 3 KEYDVIVIGGGHAGVEAALAAAR-MGAKTLLLTLN 36 (621)
T ss_pred CCCceEEECCCccchHHHHhhhc-cCCeEEEEEcC
Confidence 45999999999999999999999 89999999655
No 158
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.39 E-value=2.2e-06 Score=89.12 Aligned_cols=34 Identities=38% Similarity=0.440 Sum_probs=31.9
Q ss_pred cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCC
Q psy760 71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 105 (511)
Q Consensus 71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~ 105 (511)
||||||||++|+++|+.|++ .|.+|+|+||.+..
T Consensus 1 dViIvGaG~aGl~~A~~L~~-~G~~v~v~Er~~~~ 34 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALAR-SGLKIALIEATPAE 34 (385)
T ss_pred CEEEECCCHHHHHHHHHHhc-CCCEEEEEeCCCcc
Confidence 89999999999999999999 89999999999753
No 159
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.39 E-value=2.3e-06 Score=91.14 Aligned_cols=34 Identities=32% Similarity=0.711 Sum_probs=32.3
Q ss_pred cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
+||+||||||++|+.+|.+|++ .|++|+|+|+++
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~-~g~~V~lie~~~ 36 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAK-AGWRVALIEQSN 36 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHH-CCCeEEEEcCCC
Confidence 5999999999999999999999 899999999974
No 160
>KOG2665|consensus
Probab=98.38 E-value=2.2e-06 Score=83.96 Aligned_cols=214 Identities=19% Similarity=0.217 Sum_probs=114.3
Q ss_pred ccCCcccEEEECCCcHHHHHHHHHhcC-CCCeEEEEcCCCCCCcccccccccccccCCCCcCCCccccccccccccCCCC
Q psy760 65 DLLLEYDFIIVGAGPGGCTVANRLSEI-PHWKILLLEAGHYFNYLVDIPVLNTNLILSPLNWGYKTEKEDCRACLGLKGQ 143 (511)
Q Consensus 65 ~~~~~~DvIVVGgG~aGl~aA~~LAe~-~G~~VLVLEaG~~~~~~~~ip~~~~~~~~~~~~w~~~t~p~~~~~~~~~~~~ 143 (511)
.....||.||||||+.|++.|.+|.-. ++.+|+|||+....... |. +-
T Consensus 44 ~s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~h-----------------------qS-----gh--- 92 (453)
T KOG2665|consen 44 ISKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVH-----------------------QS-----GH--- 92 (453)
T ss_pred cccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhcee-----------------------ec-----cc---
Confidence 345679999999999999999999853 89999999998643210 00 00
Q ss_pred ccccCCcceecccccccccccccCCcccchHHhhcCCCCCChhchHHHHHHHHhhhcccccCCCCCCCCcccccccCCCC
Q psy760 144 RCPWPSGKGVGGTSLINTMLYTRGNKRNYDDWAKLGNYGWSYNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTEYN 223 (511)
Q Consensus 144 ~~~~~rGk~lGGsS~~n~~~~~r~~~~d~~~w~~~g~~~w~~~~l~~y~~k~e~~~~~~~~~~~~~g~~G~l~v~~~~~~ 223 (511)
-|..+-+++|..+.. ..+ ++=.. ..+-+..|+++-+ --+...|.|-+......
T Consensus 93 -----------NSgViHaGIYY~P~S--LKA--klCV~--G~~LlY~yc~e~~----------IpyKk~GKLIVAt~~~E 145 (453)
T KOG2665|consen 93 -----------NSGVIHAGIYYKPGS--LKA--KLCVE--GRELLYEYCDEKK----------IPYKKTGKLIVATESEE 145 (453)
T ss_pred -----------ccceeeeeeeeCCcc--cch--hhhhc--cHHHHHHHhhhcC----------CChhhcceEEEEeChhh
Confidence 011111222222211 000 00000 0111223333211 12335678888777777
Q ss_pred ChHHHHHHHHHHHcCCCCC-CCCCCCc-------cceeecccccCCCc-ccchhHHhhHhhhhCCCcEEEeCceEEEEEE
Q psy760 224 TPMLDAFLQAGMEAGYPLV-DYNGKTQ-------TGFARAQATLHKRS-RRSSAKDYIDPIKKRCNLTVKDSSFVKKILI 294 (511)
Q Consensus 224 ~~~~~~~~~a~~~~G~~~~-~~~~~~~-------~G~~~~~~~~~~g~-r~~~~~~~L~~~~~r~gv~v~~~t~V~~I~~ 294 (511)
-|..+.+++...+.|++-. .+.+.+. .|..... ..+.|. .+....--+..--+..|.++.+|.+|.++..
T Consensus 146 iprLd~L~~~g~qN~v~glrmieg~ei~~~EP~crgvkAl~-sPhtGIvD~~~v~ls~~edF~~~gg~i~~n~~l~g~~~ 224 (453)
T KOG2665|consen 146 IPRLDALMHRGTQNGVPGLRMIEGSEIMEMEPYCRGVKALL-SPHTGIVDWGSVTLSFGEDFDFMGGRIYTNFRLQGIAQ 224 (453)
T ss_pred cchHHHHHHhhhhcCCCCeeeeccchhhhcChhhhhhhhhc-CCCcceeehHHHHHHHHHHHHHhcccccccceeccchh
Confidence 7888888888888877752 2222111 1111000 001111 1222222222224567999999999999977
Q ss_pred cCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHHhcCCC
Q psy760 295 DPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIG 340 (511)
Q Consensus 295 d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~~SGIG 340 (511)
+++..--.-+.+ .+++..+++.+ .||-||| +.+.++-.+||.-
T Consensus 225 n~~~~~~Ypivv-~ngk~ee~r~~-~~vtc~g-l~sdr~aa~sgc~ 267 (453)
T KOG2665|consen 225 NKEATFSYPIVV-LNGKGEEKRTK-NVVTCAG-LQSDRCAALSGCE 267 (453)
T ss_pred ccCCCCCCceEE-ecCccceeEEe-EEEEecc-ccHhHHHHHhCCC
Confidence 653111111222 23344467774 4555555 8899999999864
No 161
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.38 E-value=6.9e-06 Score=85.48 Aligned_cols=33 Identities=45% Similarity=0.491 Sum_probs=31.4
Q ss_pred cEEEECCCcHHHHHHHHHhcCCC-CeEEEEcCCCC
Q psy760 71 DFIIVGAGPGGCTVANRLSEIPH-WKILLLEAGHY 104 (511)
Q Consensus 71 DvIVVGgG~aGl~aA~~LAe~~G-~~VLVLEaG~~ 104 (511)
||+|||||++|+++|..|++ .| ++|+|+||.+.
T Consensus 1 dv~IvGaG~aGl~~A~~L~~-~G~~~v~v~E~~~~ 34 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSR-LGKIKIALIEANSP 34 (382)
T ss_pred CEEEECccHHHHHHHHHHhc-CCCceEEEEeCCCc
Confidence 89999999999999999999 89 99999999864
No 162
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.38 E-value=1.5e-05 Score=83.87 Aligned_cols=60 Identities=20% Similarity=0.154 Sum_probs=45.4
Q ss_pred hhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHH
Q psy760 271 YIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLL 334 (511)
Q Consensus 271 ~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL 334 (511)
.|....++.|+++++++.|+++..++ ++++++. ..+++...++|+ .||+|+|.+.+.-|.
T Consensus 264 aL~~~l~~~Gv~I~~g~~V~~v~~~~--~~V~~v~-~~~g~~~~i~AD-~VVLAtGrf~s~GL~ 323 (422)
T PRK05329 264 ALRRAFERLGGRIMPGDEVLGAEFEG--GRVTAVW-TRNHGDIPLRAR-HFVLATGSFFSGGLV 323 (422)
T ss_pred HHHHHHHhCCCEEEeCCEEEEEEEeC--CEEEEEE-eeCCceEEEECC-EEEEeCCCcccCcee
Confidence 45455667899999999999998775 5666665 344555679997 699999998766553
No 163
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.37 E-value=2.6e-06 Score=85.23 Aligned_cols=33 Identities=42% Similarity=0.679 Sum_probs=31.3
Q ss_pred ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
|||+|||||++|+.+|..|++ .|.+|+|+|++.
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~-~g~~v~lie~~~ 33 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAAR-ANLKTLIIEGME 33 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHH-CCCCEEEEeccC
Confidence 799999999999999999999 799999999874
No 164
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.37 E-value=1.4e-06 Score=93.22 Aligned_cols=35 Identities=40% Similarity=0.749 Sum_probs=32.6
Q ss_pred CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
.+||+||||||+||+.+|.+|++ .|++|+|+|++.
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~-~G~~V~liE~~~ 37 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQ-LGLKVAIVEKEK 37 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHH-CCCcEEEEeccc
Confidence 46999999999999999999999 799999999864
No 165
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.36 E-value=2.5e-06 Score=91.56 Aligned_cols=33 Identities=36% Similarity=0.676 Sum_probs=31.3
Q ss_pred cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760 69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG 102 (511)
Q Consensus 69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG 102 (511)
+||+||||||+||+.+|.+|++ .|++|+|+|+.
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~-~G~~V~liE~~ 35 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQ-LGLKVACVEGR 35 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHh-CCCeEEEEecC
Confidence 5999999999999999999999 89999999974
No 166
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.33 E-value=3.6e-06 Score=88.15 Aligned_cols=35 Identities=26% Similarity=0.413 Sum_probs=32.6
Q ss_pred cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760 69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104 (511)
Q Consensus 69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~ 104 (511)
.+||+|||||++|+++|..|++ .|++|+|+|+.+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~-~G~~v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHK-AGIDNVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHH-CCCCEEEEECCCC
Confidence 4899999999999999999999 8999999999863
No 167
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.33 E-value=4.3e-06 Score=87.29 Aligned_cols=36 Identities=22% Similarity=0.347 Sum_probs=33.1
Q ss_pred CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760 68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104 (511)
Q Consensus 68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~ 104 (511)
+.|||||||||++|+++|+.|++ .|.+|+|+|+.+.
T Consensus 6 ~~~dViIVGaG~~Gl~~A~~L~~-~G~~v~liE~~~~ 41 (388)
T PRK07494 6 EHTDIAVIGGGPAGLAAAIALAR-AGASVALVAPEPP 41 (388)
T ss_pred CCCCEEEECcCHHHHHHHHHHhc-CCCeEEEEeCCCC
Confidence 46999999999999999999999 7999999999753
No 168
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=3.2e-06 Score=85.17 Aligned_cols=35 Identities=43% Similarity=0.694 Sum_probs=31.0
Q ss_pred CcccEEEECCCcHHHHHHHHHhcCCCCe-EEEEcCCC
Q psy760 68 LEYDFIIVGAGPGGCTVANRLSEIPHWK-ILLLEAGH 103 (511)
Q Consensus 68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~-VLVLEaG~ 103 (511)
+.||+||||||+||++||..+++ .+++ ++|+|++.
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r-~~l~~~li~~~~~ 37 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAAR-AGLKVVLILEGGE 37 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHH-cCCCcEEEEecCC
Confidence 46999999999999999999999 8988 77777763
No 169
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.31 E-value=2.3e-06 Score=89.04 Aligned_cols=33 Identities=21% Similarity=0.334 Sum_probs=31.5
Q ss_pred ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
+||+|||||++|+++|..|++ .|++|+|+|+.+
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~-~G~~v~l~E~~~ 34 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQ-KGIKTTIFESKS 34 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHc-CCCeEEEecCCC
Confidence 799999999999999999999 899999999974
No 170
>PLN02463 lycopene beta cyclase
Probab=98.31 E-value=7.4e-06 Score=87.09 Aligned_cols=36 Identities=28% Similarity=0.516 Sum_probs=33.1
Q ss_pred CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
...|||||||||+||+++|..|++ .|.+|+|||+.+
T Consensus 26 ~~~~DVvIVGaGpAGLalA~~La~-~Gl~V~liE~~~ 61 (447)
T PLN02463 26 SRVVDLVVVGGGPAGLAVAQQVSE-AGLSVCCIDPSP 61 (447)
T ss_pred ccCceEEEECCCHHHHHHHHHHHH-CCCeEEEeccCc
Confidence 346999999999999999999999 899999999864
No 171
>PRK07588 hypothetical protein; Provisional
Probab=98.30 E-value=4.4e-06 Score=87.42 Aligned_cols=33 Identities=30% Similarity=0.266 Sum_probs=31.1
Q ss_pred cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760 71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104 (511)
Q Consensus 71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~ 104 (511)
||+|||||++|+++|+.|++ .|++|+|+||.+.
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~-~G~~v~v~E~~~~ 34 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRR-YGHEPTLIERAPE 34 (391)
T ss_pred eEEEECccHHHHHHHHHHHH-CCCceEEEeCCCC
Confidence 89999999999999999999 8999999999853
No 172
>KOG1399|consensus
Probab=98.30 E-value=4.2e-06 Score=88.32 Aligned_cols=70 Identities=16% Similarity=0.241 Sum_probs=46.4
Q ss_pred hHHhhHhhhhCCCc--EEEeCceEEEEEEcCCCCcEEEEEEEECCe-EEEEEeCcEEEEccCCCCcHHHHHhcCCC
Q psy760 268 AKDYIDPIKKRCNL--TVKDSSFVKKILIDPVTKKACGVLATIKGI-DHKILARKEVILSAGAFNSPKLLMLSGIG 340 (511)
Q Consensus 268 ~~~~L~~~~~r~gv--~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~-~~~v~A~k~VILAAGa~~SP~LL~~SGIG 340 (511)
...||...|++-++ .|..++.|.++...++ ....|.+..+++ ....-.+ .||+|+|-+..|.+-+.+|.+
T Consensus 92 ~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~--gkW~V~~~~~~~~~~~~ifd-~VvVctGh~~~P~~P~~~g~~ 164 (448)
T KOG1399|consen 92 VLEYLRDYAKHFDLLKMINFNTEVVRVDSIDK--GKWRVTTKDNGTQIEEEIFD-AVVVCTGHYVEPRIPQIPGPG 164 (448)
T ss_pred HHHHHHHHHHhcChhhheEecccEEEEeeccC--CceeEEEecCCcceeEEEee-EEEEcccCcCCCCCCcCCCCc
Confidence 44588887877665 6888888888866542 234455544322 2234455 699999998548888887765
No 173
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.29 E-value=8.1e-06 Score=89.20 Aligned_cols=37 Identities=41% Similarity=0.513 Sum_probs=34.0
Q ss_pred CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760 67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104 (511)
Q Consensus 67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~ 104 (511)
..++||+|||||++|+++|+.|++ .|.+|+||||.+.
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~-~G~~v~v~Er~~~ 44 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQ-YGVRVLVLERWPT 44 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHH-CCCcEEEEecCCC
Confidence 456999999999999999999999 8999999999864
No 174
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.28 E-value=5.8e-06 Score=88.53 Aligned_cols=33 Identities=36% Similarity=0.715 Sum_probs=31.2
Q ss_pred cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760 69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG 102 (511)
Q Consensus 69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG 102 (511)
.||+||||||++|+.+|.+|++ .|++|+|+|++
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~-~G~~v~lie~~ 33 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQ-LGLKVALVEKE 33 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHh-CCCeEEEEecC
Confidence 4999999999999999999999 89999999983
No 175
>PRK07233 hypothetical protein; Provisional
Probab=98.28 E-value=7e-06 Score=86.76 Aligned_cols=36 Identities=28% Similarity=0.412 Sum_probs=32.8
Q ss_pred cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCCc
Q psy760 71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNY 107 (511)
Q Consensus 71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~~ 107 (511)
+|||||||++|+++|+.|++ .|++|+|||+.+....
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~-~G~~v~vlE~~~~~GG 36 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAK-RGHEVTVFEADDQLGG 36 (434)
T ss_pred CEEEECCCHHHHHHHHHHHH-CCCcEEEEEeCCCCCC
Confidence 58999999999999999999 7999999999987643
No 176
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.28 E-value=6.4e-06 Score=87.61 Aligned_cols=38 Identities=24% Similarity=0.350 Sum_probs=34.2
Q ss_pred cCCcccEEEECCCcHHHHHHHHHhcCCCCe-EEEEcCCCC
Q psy760 66 LLLEYDFIIVGAGPGGCTVANRLSEIPHWK-ILLLEAGHY 104 (511)
Q Consensus 66 ~~~~~DvIVVGgG~aGl~aA~~LAe~~G~~-VLVLEaG~~ 104 (511)
..+.+||+|||||.+|+++|++|.+ .|.. ++|+||...
T Consensus 5 ~~~~~~v~IIGaG~sGlaaa~~L~~-~g~~~~~i~Ek~~~ 43 (443)
T COG2072 5 VATHTDVAIIGAGQSGLAAAYALKQ-AGVPDFVIFEKRDD 43 (443)
T ss_pred cCCcccEEEECCCHHHHHHHHHHHH-cCCCcEEEEEccCC
Confidence 3457999999999999999999999 7888 999999865
No 177
>PLN02507 glutathione reductase
Probab=98.27 E-value=4.4e-06 Score=90.34 Aligned_cols=34 Identities=26% Similarity=0.443 Sum_probs=31.9
Q ss_pred CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcC
Q psy760 67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEA 101 (511)
Q Consensus 67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEa 101 (511)
..+||+||||||++|..+|.+|++ .|.+|+|+|+
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~-~G~~V~liE~ 56 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSAN-FGAKVGICEL 56 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHH-CCCeEEEEec
Confidence 447999999999999999999999 8999999997
No 178
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.27 E-value=4.5e-06 Score=87.82 Aligned_cols=34 Identities=29% Similarity=0.458 Sum_probs=32.0
Q ss_pred CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760 68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG 102 (511)
Q Consensus 68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG 102 (511)
..+||+|||||++|+++|..|++ .|++|+|+|+.
T Consensus 3 ~~~dV~IvGaG~~Gl~~A~~L~~-~G~~v~viE~~ 36 (405)
T PRK08850 3 QSVDVAIIGGGMVGLALAAALKE-SDLRIAVIEGQ 36 (405)
T ss_pred CcCCEEEECccHHHHHHHHHHHh-CCCEEEEEcCC
Confidence 35899999999999999999999 89999999996
No 179
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.26 E-value=3.3e-06 Score=91.67 Aligned_cols=34 Identities=26% Similarity=0.510 Sum_probs=31.2
Q ss_pred CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcC
Q psy760 67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEA 101 (511)
Q Consensus 67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEa 101 (511)
...|||+|||||+||+++|.+|++ .|++|+|+|.
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~-~G~~v~li~~ 243 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAAR-KGLRTAMVAE 243 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHH-CCCcEEEEec
Confidence 346999999999999999999999 8999999974
No 180
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.26 E-value=9e-06 Score=85.10 Aligned_cols=36 Identities=33% Similarity=0.378 Sum_probs=33.2
Q ss_pred CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760 68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104 (511)
Q Consensus 68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~ 104 (511)
...||+|||||++|+++|..|++ .|++|+|+||.+.
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~-~g~~v~v~Er~~~ 38 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALAR-QGIKVKLLEQAAE 38 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHh-CCCcEEEEeeCcc
Confidence 45899999999999999999999 8999999999853
No 181
>PRK06753 hypothetical protein; Provisional
Probab=98.25 E-value=5.7e-06 Score=85.88 Aligned_cols=33 Identities=33% Similarity=0.491 Sum_probs=31.3
Q ss_pred cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760 71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104 (511)
Q Consensus 71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~ 104 (511)
||+|||||++|+++|+.|++ .|++|+|+||.+.
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~-~g~~v~v~E~~~~ 34 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQE-QGHEVKVFEKNES 34 (373)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCCcEEEEecCCc
Confidence 79999999999999999999 8999999999864
No 182
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.25 E-value=6.8e-06 Score=89.32 Aligned_cols=34 Identities=24% Similarity=0.408 Sum_probs=31.4
Q ss_pred CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcC
Q psy760 67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEA 101 (511)
Q Consensus 67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEa 101 (511)
...||++|||||+||+.+|.+|++ .|++|+|+|+
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~-~G~~v~li~~ 242 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAAR-KGIRTGIVAE 242 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHH-CCCcEEEEec
Confidence 446999999999999999999999 8999999975
No 183
>PRK14694 putative mercuric reductase; Provisional
Probab=98.24 E-value=4.6e-06 Score=89.53 Aligned_cols=35 Identities=20% Similarity=0.371 Sum_probs=32.7
Q ss_pred CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
..||+||||||+||+++|.+|++ .|++|+|+|++.
T Consensus 5 ~~~dviVIGaG~aG~~aA~~l~~-~g~~v~lie~~~ 39 (468)
T PRK14694 5 NNLHIAVIGSGGSAMAAALKATE-RGARVTLIERGT 39 (468)
T ss_pred CcCCEEEECCCHHHHHHHHHHHh-CCCcEEEEEccc
Confidence 47999999999999999999999 799999999873
No 184
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=98.23 E-value=1e-05 Score=88.75 Aligned_cols=60 Identities=18% Similarity=0.334 Sum_probs=48.4
Q ss_pred hHHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEE--CCeEEEEEeCcEEEEccCCCCc
Q psy760 268 AKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNS 330 (511)
Q Consensus 268 ~~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~--~g~~~~v~A~k~VILAAGa~~S 330 (511)
....|...+++.|++|++++.|++|+.++ ++|+||.... +++...++|+ .||||||++..
T Consensus 121 i~~~L~~~~~~~gi~i~~~~~~~~Li~~~--g~v~Ga~~~~~~~g~~~~i~Ak-aVILATGG~~~ 182 (565)
T TIGR01816 121 ILHTLYQQNLKADTSFFNEYFALDLLMED--GECRGVIAYCLETGEIHRFRAK-AVVLATGGYGR 182 (565)
T ss_pred HHHHHHHHHHhCCCEEEeccEEEEEEeeC--CEEEEEEEEEcCCCcEEEEEeC-eEEECCCCccc
Confidence 34455555667899999999999999864 8999998753 5677788995 89999999865
No 185
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.22 E-value=2.4e-05 Score=85.72 Aligned_cols=37 Identities=27% Similarity=0.418 Sum_probs=34.0
Q ss_pred CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760 67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104 (511)
Q Consensus 67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~ 104 (511)
..++||+|||||++|+++|+.|++ .|.+|+|+||.+.
T Consensus 21 ~~~~dVlIVGaGpaGl~lA~~L~~-~G~~v~viE~~~~ 57 (547)
T PRK08132 21 PARHPVVVVGAGPVGLALAIDLAQ-QGVPVVLLDDDDT 57 (547)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHh-CCCcEEEEeCCCC
Confidence 467999999999999999999999 8999999999863
No 186
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.22 E-value=8.8e-06 Score=84.99 Aligned_cols=33 Identities=30% Similarity=0.635 Sum_probs=31.1
Q ss_pred cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760 71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104 (511)
Q Consensus 71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~ 104 (511)
||||||||++|+++|.+|++ .|.+|+|||+.+.
T Consensus 1 DviIiGaG~AGl~~A~~la~-~g~~v~liE~~~~ 33 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELAR-PGLRVQLIEPHPP 33 (388)
T ss_pred CEEEECCCHHHHHHHHHHHh-CCCeEEEEccCCC
Confidence 89999999999999999998 7999999999854
No 187
>PLN02546 glutathione reductase
Probab=98.21 E-value=3.8e-06 Score=91.63 Aligned_cols=33 Identities=24% Similarity=0.397 Sum_probs=31.3
Q ss_pred CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcC
Q psy760 68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEA 101 (511)
Q Consensus 68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEa 101 (511)
.+|||||||+|++|..+|.+||+ .|++|+|+|+
T Consensus 78 ~~yDvvVIG~GpaG~~aA~~aa~-~G~~V~liE~ 110 (558)
T PLN02546 78 YDFDLFTIGAGSGGVRASRFASN-FGASAAVCEL 110 (558)
T ss_pred CCCCEEEECCCHHHHHHHHHHHH-CCCeEEEEec
Confidence 46999999999999999999999 8999999996
No 188
>PTZ00367 squalene epoxidase; Provisional
Probab=98.20 E-value=9.6e-06 Score=88.59 Aligned_cols=35 Identities=40% Similarity=0.596 Sum_probs=32.9
Q ss_pred CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
.+|||||||||++|+++|..|++ .|++|+|+||..
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar-~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSK-QGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHh-cCCEEEEEcccc
Confidence 46999999999999999999999 899999999974
No 189
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.20 E-value=7.9e-06 Score=85.13 Aligned_cols=33 Identities=45% Similarity=0.802 Sum_probs=30.7
Q ss_pred cEEEECCCcHHHHHHHHH--hcCCCCeEEEEcCCCC
Q psy760 71 DFIIVGAGPGGCTVANRL--SEIPHWKILLLEAGHY 104 (511)
Q Consensus 71 DvIVVGgG~aGl~aA~~L--Ae~~G~~VLVLEaG~~ 104 (511)
||||||||+||+++|.+| ++ .|.+|+|||+.+.
T Consensus 1 DviIvGaGpAGlslA~~l~~~~-~g~~Vllid~~~~ 35 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADAR-PGLSVLLIDPKPK 35 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcC-CCCEEEEEcCCcc
Confidence 899999999999999999 66 8999999999864
No 190
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.19 E-value=6.6e-06 Score=87.78 Aligned_cols=56 Identities=16% Similarity=0.165 Sum_probs=39.2
Q ss_pred chhHHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCC
Q psy760 266 SSAKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGA 327 (511)
Q Consensus 266 ~~~~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa 327 (511)
.....+|...+.+.|++++.++ |+++..+++ +.+++|+... |+ +++|+ -||=|+|-
T Consensus 154 ~~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~-g~i~~v~~~~-g~--~i~ad-~~IDASG~ 209 (454)
T PF04820_consen 154 AKFDQFLRRHAEERGVEVIEGT-VVDVELDED-GRITAVRLDD-GR--TIEAD-FFIDASGR 209 (454)
T ss_dssp HHHHHHHHHHHHHTT-EEEET--EEEEEE-TT-SEEEEEEETT-SE--EEEES-EEEE-SGG
T ss_pred HHHHHHHHHHHhcCCCEEEeCE-EEEEEEcCC-CCEEEEEECC-CC--EEEEe-EEEECCCc
Confidence 4556688887888899999875 888888774 7888887654 33 78997 67778873
No 191
>PRK07538 hypothetical protein; Provisional
Probab=98.19 E-value=7.1e-06 Score=86.59 Aligned_cols=33 Identities=30% Similarity=0.484 Sum_probs=31.0
Q ss_pred cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760 71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104 (511)
Q Consensus 71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~ 104 (511)
||+|||||++|+++|+.|++ .|++|+|+||.+.
T Consensus 2 dV~IVGaG~aGl~~A~~L~~-~G~~v~v~E~~~~ 34 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQ-RGIEVVVFEAAPE 34 (413)
T ss_pred eEEEECCCHHHHHHHHHHHh-CCCcEEEEEcCCc
Confidence 89999999999999999999 8999999999753
No 192
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.19 E-value=2e-05 Score=84.21 Aligned_cols=54 Identities=11% Similarity=-0.007 Sum_probs=39.4
Q ss_pred hHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECC--eEEEEEeCcEEEEccCC
Q psy760 272 IDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKG--IDHKILARKEVILSAGA 327 (511)
Q Consensus 272 L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g--~~~~v~A~k~VILAAGa 327 (511)
+...+++.|++|+++++|++|..+++ ++++||++..++ +.+++.|+ .||+|+..
T Consensus 219 l~~~l~~~g~~i~l~~~V~~I~~~~~-~~v~~v~~~~~~~~~~~~~~a~-~VI~a~p~ 274 (453)
T TIGR02731 219 IVDYITSRGGEVRLNSRLKEIVLNED-GSVKHFVLADGEGQRRFEVTAD-AYVSAMPV 274 (453)
T ss_pred HHHHHHhcCCEEeCCCeeEEEEECCC-CCEEEEEEecCCCCceeEEECC-EEEEcCCH
Confidence 33344567999999999999987553 678899886432 22257887 69999875
No 193
>PRK07236 hypothetical protein; Provisional
Probab=98.18 E-value=2.9e-05 Score=81.12 Aligned_cols=34 Identities=21% Similarity=0.372 Sum_probs=32.2
Q ss_pred cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
..||||||||++|+++|..|++ .|.+|+|+||.+
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~-~G~~v~v~E~~~ 39 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRR-AGWDVDVFERSP 39 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHh-CCCCEEEEecCC
Confidence 4899999999999999999999 899999999975
No 194
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.17 E-value=1.7e-05 Score=92.44 Aligned_cols=36 Identities=25% Similarity=0.455 Sum_probs=33.4
Q ss_pred CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760 68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104 (511)
Q Consensus 68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~ 104 (511)
..+||+|||||+||+++|..|++ .|++|+|+|+++.
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar-~G~~V~liD~~~~ 197 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAAR-AGARVILVDEQPE 197 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHh-CCCcEEEEecCCC
Confidence 46899999999999999999999 8999999999853
No 195
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=98.17 E-value=5.9e-06 Score=84.16 Aligned_cols=114 Identities=18% Similarity=0.225 Sum_probs=65.2
Q ss_pred CCcccccccCCCCChHHHHHHHHHHHcCCCCCCCCC-----------CCccceeecccccCCCcccchhHHhhHhhhhCC
Q psy760 211 TQGFIGVDYTEYNTPMLDAFLQAGMEAGYPLVDYNG-----------KTQTGFARAQATLHKRSRRSSAKDYIDPIKKRC 279 (511)
Q Consensus 211 ~~G~l~v~~~~~~~~~~~~~~~a~~~~G~~~~~~~~-----------~~~~G~~~~~~~~~~g~r~~~~~~~L~~~~~r~ 279 (511)
..|.+.+...+......+...+..++.|++...++. ....+..+.+.. .-.........|...+++.
T Consensus 73 ~~G~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~l~~~e~~~~~p~l~~~~~~g~~~~~~--g~v~p~~l~~~l~~~~~~~ 150 (337)
T TIGR02352 73 QCGTLVVAFDEDDVEHLRQLADLQSATGMEVEWLSGRALRRLEPYLSGGIRGAVFYPDD--AHVDPRALLKALEKALEKL 150 (337)
T ss_pred EccEEEEeCCHHHHHHHHHHHHHHHhcCCceEEcCHHHHHHhCCCCCcccceEEEcCCC--ceEChHHHHHHHHHHHHHc
Confidence 345565555444444555566666677765422221 111111111110 0012223333454556778
Q ss_pred CcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHH
Q psy760 280 NLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLL 334 (511)
Q Consensus 280 gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL 334 (511)
|++++.+++|+.|..++ +++++|... ++ +++|+ .||+|+|+ +++.++
T Consensus 151 g~~~~~~~~v~~i~~~~--~~~~~v~~~-~g---~~~a~-~vV~a~G~-~~~~l~ 197 (337)
T TIGR02352 151 GVEIIEHTEVQHIEIRG--EKVTAIVTP-SG---DVQAD-QVVLAAGA-WAGELL 197 (337)
T ss_pred CCEEEccceEEEEEeeC--CEEEEEEcC-CC---EEECC-EEEEcCCh-hhhhcc
Confidence 99999999999998765 567777642 23 68897 59999997 566654
No 196
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=98.16 E-value=1.3e-05 Score=86.10 Aligned_cols=60 Identities=12% Similarity=0.058 Sum_probs=42.8
Q ss_pred hhhhCCCcEEEeCceEEEEEEcCC--CC-cEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHH
Q psy760 274 PIKKRCNLTVKDSSFVKKILIDPV--TK-KACGVLATIKGIDHKILARKEVILSAGAFNSPKLL 334 (511)
Q Consensus 274 ~~~~r~gv~v~~~t~V~~I~~d~~--~~-ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL 334 (511)
+..++.|++|+++++|++|..+++ +. ++++|++..++...++.|+ .||+|+......+||
T Consensus 227 ~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD-~VVlA~p~~~~~~Ll 289 (474)
T TIGR02732 227 EYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKAD-AYVAACDVPGIKRLL 289 (474)
T ss_pred HHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECC-EEEECCChHHHHhhC
Confidence 344568999999999999998642 22 4888887543211257897 699999986666665
No 197
>PTZ00058 glutathione reductase; Provisional
Probab=98.15 E-value=2.8e-06 Score=92.67 Aligned_cols=35 Identities=34% Similarity=0.653 Sum_probs=32.7
Q ss_pred CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
.+||+||||||+||..+|.++++ .|.+|+|+|++.
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~-~G~~ValIEk~~ 81 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAAR-NKAKVALVEKDY 81 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHH-cCCeEEEEeccc
Confidence 57999999999999999999999 899999999863
No 198
>PRK06996 hypothetical protein; Provisional
Probab=98.14 E-value=9.1e-06 Score=85.35 Aligned_cols=36 Identities=36% Similarity=0.585 Sum_probs=32.2
Q ss_pred CCcccEEEECCCcHHHHHHHHHhcCCC----CeEEEEcCCC
Q psy760 67 LLEYDFIIVGAGPGGCTVANRLSEIPH----WKILLLEAGH 103 (511)
Q Consensus 67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G----~~VLVLEaG~ 103 (511)
..++||+|||||++|+++|+.|++ .| .+|+|+|+.+
T Consensus 9 ~~~~dv~IvGgGpaG~~~A~~L~~-~g~~~g~~v~l~e~~~ 48 (398)
T PRK06996 9 APDFDIAIVGAGPVGLALAGWLAR-RSATRALSIALIDARE 48 (398)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhc-CCCcCCceEEEecCCC
Confidence 457999999999999999999998 55 5899999975
No 199
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.09 E-value=3.8e-06 Score=65.10 Aligned_cols=32 Identities=25% Similarity=0.498 Sum_probs=28.7
Q ss_pred EECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCC
Q psy760 74 IVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN 106 (511)
Q Consensus 74 VVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~ 106 (511)
|||||++|+++|++|++ .|.+|+|+|+.+...
T Consensus 1 IiGaG~sGl~aA~~L~~-~g~~v~v~E~~~~~G 32 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAK-AGYRVTVFEKNDRLG 32 (68)
T ss_dssp EES-SHHHHHHHHHHHH-TTSEEEEEESSSSSS
T ss_pred CEeeCHHHHHHHHHHHH-CCCcEEEEecCcccC
Confidence 89999999999999999 799999999997654
No 200
>PRK10262 thioredoxin reductase; Provisional
Probab=98.08 E-value=3.4e-05 Score=78.50 Aligned_cols=35 Identities=23% Similarity=0.394 Sum_probs=32.1
Q ss_pred CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760 67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG 102 (511)
Q Consensus 67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG 102 (511)
.+.+||+|||||+||+.+|..|++ .|++|+++|+.
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~-~g~~~~~ie~~ 38 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAAR-ANLQPVLITGM 38 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHH-CCCCeEEEEee
Confidence 457999999999999999999999 79999999964
No 201
>PRK05868 hypothetical protein; Validated
Probab=98.05 E-value=4.9e-05 Score=79.10 Aligned_cols=34 Identities=18% Similarity=0.265 Sum_probs=31.5
Q ss_pred ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760 70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104 (511)
Q Consensus 70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~ 104 (511)
.||+|||||++|+++|..|++ .|++|+|+|+.+.
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~-~G~~v~viE~~~~ 35 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGR-HGYSVTMVERHPG 35 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHh-CCCCEEEEcCCCC
Confidence 389999999999999999999 8999999999854
No 202
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.04 E-value=5.3e-05 Score=79.60 Aligned_cols=34 Identities=26% Similarity=0.458 Sum_probs=31.3
Q ss_pred ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760 70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104 (511)
Q Consensus 70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~ 104 (511)
-+|+|||||++|+++|+.|++ .|++|+|+||.+.
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~-~G~~V~i~E~~~~ 36 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAA-RGWAVTIIEKAQE 36 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHh-CCCcEEEEecCCc
Confidence 369999999999999999999 8999999999753
No 203
>PLN02487 zeta-carotene desaturase
Probab=98.04 E-value=3.9e-05 Score=83.76 Aligned_cols=60 Identities=12% Similarity=0.001 Sum_probs=42.8
Q ss_pred hhhhCCCcEEEeCceEEEEEEcCC-CC--cEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHH
Q psy760 274 PIKKRCNLTVKDSSFVKKILIDPV-TK--KACGVLATIKGIDHKILARKEVILSAGAFNSPKLL 334 (511)
Q Consensus 274 ~~~~r~gv~v~~~t~V~~I~~d~~-~~--ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL 334 (511)
+..++.|++|++++.|++|..+.+ ++ +++||++.+++....+.|+ .||+|++.....+||
T Consensus 303 ~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD-~VV~A~p~~~~~~Ll 365 (569)
T PLN02487 303 KYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKAD-AYVAACDVPGIKRLL 365 (569)
T ss_pred HHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECC-EEEECCCHHHHHHhC
Confidence 345678999999999999999742 13 5899988533333357887 699999865444444
No 204
>KOG2960|consensus
Probab=98.03 E-value=2.5e-06 Score=79.00 Aligned_cols=69 Identities=25% Similarity=0.316 Sum_probs=51.6
Q ss_pred HHhhccccccccchhhhhhhhccccchhhccccCCCCCcccC----------CcccEEEECCCcHHHHHHHHHhcC-CCC
Q psy760 26 YLSSTSLSINVNEFDYAVKSYIEDGIFEQLEYKSSNKDQDLL----------LEYDFIIVGAGPGGCTVANRLSEI-PHW 94 (511)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~DvIVVGgG~aGl~aA~~LAe~-~G~ 94 (511)
.+.+.+++....+.+-..+.| .|+.++..++ .|. .+.||||||+|.+|+++|+..+++ +..
T Consensus 31 ~p~~~~l~~~~~s~d~s~F~F-------aPIrEStVSR-aMTrRYf~DldkyAesDvviVGAGSaGLsAAY~I~~~rPdl 102 (328)
T KOG2960|consen 31 TPVTHCLSDIVKSEDWSDFKF-------APIRESTVSR-AMTRRYFKDLDKYAESDVVIVGAGSAGLSAAYVIAKNRPDL 102 (328)
T ss_pred Ccccccccccccccccccccc-------cchhHHHHHH-HHHHHHHHHHHhhhccceEEECCCccccceeeeeeccCCCc
Confidence 455556666666666666777 5666665554 222 356999999999999999999964 999
Q ss_pred eEEEEcCC
Q psy760 95 KILLLEAG 102 (511)
Q Consensus 95 ~VLVLEaG 102 (511)
+|.+||+.
T Consensus 103 kvaIIE~S 110 (328)
T KOG2960|consen 103 KVAIIESS 110 (328)
T ss_pred eEEEEEee
Confidence 99999986
No 205
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=98.02 E-value=3.5e-05 Score=85.65 Aligned_cols=40 Identities=40% Similarity=0.557 Sum_probs=35.1
Q ss_pred ccCCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760 65 DLLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104 (511)
Q Consensus 65 ~~~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~ 104 (511)
.|.+++||+|||||++|+++|+.|++.+|.+|+|||+.+.
T Consensus 28 ~~~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~ 67 (634)
T PRK08294 28 DLPDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPG 67 (634)
T ss_pred cCCCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCC
Confidence 3567899999999999999999999822999999999754
No 206
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.00 E-value=1.5e-05 Score=85.87 Aligned_cols=33 Identities=33% Similarity=0.669 Sum_probs=31.4
Q ss_pred cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760 69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG 102 (511)
Q Consensus 69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG 102 (511)
+||+||||+|++|..+|.++++ .|++|+|+|+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~-~G~~v~lie~~ 34 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAAD-YGAKVMLLDFV 34 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHH-CCCeEEEEecc
Confidence 5999999999999999999999 89999999985
No 207
>KOG2311|consensus
Probab=98.00 E-value=1.2e-05 Score=82.75 Aligned_cols=35 Identities=29% Similarity=0.550 Sum_probs=31.5
Q ss_pred CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760 67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG 102 (511)
Q Consensus 67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG 102 (511)
...|||||||||-|||-+|...|+ -|.+.++|-..
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR-~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAAR-LGARTLLLTHN 60 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHh-cCCceEEeecc
Confidence 567999999999999999999999 89998888654
No 208
>PRK09897 hypothetical protein; Provisional
Probab=98.00 E-value=8.4e-05 Score=80.53 Aligned_cols=36 Identities=28% Similarity=0.300 Sum_probs=30.6
Q ss_pred ccEEEECCCcHHHHHHHHHhcC-CCCeEEEEcCCCCC
Q psy760 70 YDFIIVGAGPGGCTVANRLSEI-PHWKILLLEAGHYF 105 (511)
Q Consensus 70 ~DvIVVGgG~aGl~aA~~LAe~-~G~~VLVLEaG~~~ 105 (511)
.+|+|||+|++|+++|.+|++. ...+|+|+|++...
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~ 38 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEA 38 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCC
Confidence 4799999999999999999873 34699999997643
No 209
>PRK14727 putative mercuric reductase; Provisional
Probab=97.99 E-value=4.2e-05 Score=82.41 Aligned_cols=36 Identities=19% Similarity=0.379 Sum_probs=33.1
Q ss_pred CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
+..||+||||+|++|+.+|.+|++ .|.+|+|+|++.
T Consensus 14 ~~~~dvvvIG~G~aG~~~a~~~~~-~g~~v~~ie~~~ 49 (479)
T PRK14727 14 KLQLHVAIIGSGSAAFAAAIKAAE-HGARVTIIEGAD 49 (479)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHh-CCCeEEEEEccC
Confidence 346999999999999999999999 899999999874
No 210
>KOG2852|consensus
Probab=97.98 E-value=7.3e-06 Score=79.47 Aligned_cols=63 Identities=21% Similarity=0.226 Sum_probs=42.1
Q ss_pred hHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEE-CCeEEEEEeCcEEEEccCCCCcHHHHHhcCC
Q psy760 272 IDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATI-KGIDHKILARKEVILSAGAFNSPKLLMLSGI 339 (511)
Q Consensus 272 L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~-~g~~~~v~A~k~VILAAGa~~SP~LL~~SGI 339 (511)
+..+.++.||+++.+. |.++.-+. .|+.+|.... .+......+. .+|||+|. +|++||..-+|
T Consensus 154 ~sea~k~~~V~lv~Gk-v~ev~dEk--~r~n~v~~ae~~~ti~~~d~~-~ivvsaGP-WTskllp~~rI 217 (380)
T KOG2852|consen 154 LSEAEKRGGVKLVFGK-VKEVSDEK--HRINSVPKAEAEDTIIKADVH-KIVVSAGP-WTSKLLPFTRI 217 (380)
T ss_pred HHHHHhhcCeEEEEee-eEEeeccc--ccccccchhhhcCceEEeeee-EEEEecCC-Cchhhcccccc
Confidence 3344567789998874 66775333 6777776552 1223456676 59999997 79999887554
No 211
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=97.98 E-value=0.00015 Score=75.09 Aligned_cols=39 Identities=33% Similarity=0.459 Sum_probs=35.4
Q ss_pred CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCC
Q psy760 67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN 106 (511)
Q Consensus 67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~ 106 (511)
.+..||||||+|.+||++|+.|.+ .|++|+|||+.+...
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~k-aG~~v~ilEar~r~G 43 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKK-AGYQVQILEARDRVG 43 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhh-cCcEEEEEeccCCcC
Confidence 467999999999999999999999 899999999987653
No 212
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.97 E-value=4.3e-05 Score=82.03 Aligned_cols=32 Identities=25% Similarity=0.472 Sum_probs=30.2
Q ss_pred cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
|+||||+|++|+.+|..|++ .|.+|+|+|++.
T Consensus 3 ~vvviG~G~~G~~~a~~~~~-~g~~v~~~e~~~ 34 (466)
T PRK07845 3 RIVIIGGGPGGYEAALVAAQ-LGADVTVIERDG 34 (466)
T ss_pred cEEEECCCHHHHHHHHHHHh-CCCeEEEEEccC
Confidence 79999999999999999999 899999999864
No 213
>PLN02612 phytoene desaturase
Probab=97.97 E-value=0.00012 Score=80.39 Aligned_cols=38 Identities=32% Similarity=0.448 Sum_probs=34.1
Q ss_pred CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCC
Q psy760 68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN 106 (511)
Q Consensus 68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~ 106 (511)
...+|+|||+|.+|+++|++|++ .|++|+|+|+.....
T Consensus 92 ~~~~v~iiG~G~~Gl~~a~~l~~-~g~~~~~~e~~~~~g 129 (567)
T PLN02612 92 KPLKVVIAGAGLAGLSTAKYLAD-AGHKPILLEARDVLG 129 (567)
T ss_pred CCCCEEEECCCHHHHHHHHHHHh-cCCeEEEEecCCCCC
Confidence 35799999999999999999999 899999999976543
No 214
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.95 E-value=4e-05 Score=78.67 Aligned_cols=62 Identities=24% Similarity=0.278 Sum_probs=37.9
Q ss_pred HHhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEE---CCeEEEEEeCcEEEEccCCCCcHHHH
Q psy760 269 KDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATI---KGIDHKILARKEVILSAGAFNSPKLL 334 (511)
Q Consensus 269 ~~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~---~g~~~~v~A~k~VILAAGa~~SP~LL 334 (511)
..|+.-++++..-.+..+++|++|..+.+.+. ..+++.. +|+..++.|+ .|||++|. +|.+=
T Consensus 98 ~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~-~~~~V~~~~~~g~~~~~~ar-~vVla~G~--~P~iP 162 (341)
T PF13434_consen 98 NDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDE-DLFRVTTRDSDGDGETYRAR-NVVLATGG--QPRIP 162 (341)
T ss_dssp HHHHHHHHCCGTTTEEESEEEEEEEEEEETTE-EEEEEEEEETTS-EEEEEES-EEEE------EE---
T ss_pred HHHHHHHHHhCCCceEECCEEEEEEEecCCCc-cEEEEEEeecCCCeeEEEeC-eEEECcCC--CCCCC
Confidence 44777677777766889999999988764232 3344433 3555689997 69999995 77653
No 215
>KOG1335|consensus
Probab=97.94 E-value=6.5e-05 Score=75.69 Aligned_cols=66 Identities=15% Similarity=0.265 Sum_probs=47.6
Q ss_pred hhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEE--ECCeEEEEEeCcEEEEccCCCCcHHHHHhcCCCCccccccCCCCc
Q psy760 275 IKKRCNLTVKDSSFVKKILIDPVTKKACGVLAT--IKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIPV 352 (511)
Q Consensus 275 ~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~--~~g~~~~v~A~k~VILAAGa~~SP~LL~~SGIGp~~~L~~~gi~v 352 (511)
..+++|+++++++.|+....+++ |.+ -|++. .+++..+++++ .+.+|.|- .| ...|+| |++.||..
T Consensus 261 ~L~kQgikF~l~tkv~~a~~~~d-g~v-~i~ve~ak~~k~~tle~D-vlLVsiGR--rP---~t~GLg----le~iGi~~ 328 (506)
T KOG1335|consen 261 VLQKQGIKFKLGTKVTSATRNGD-GPV-EIEVENAKTGKKETLECD-VLLVSIGR--RP---FTEGLG----LEKIGIEL 328 (506)
T ss_pred HHHhcCceeEeccEEEEeeccCC-Cce-EEEEEecCCCceeEEEee-EEEEEccC--cc---cccCCC----hhhccccc
Confidence 44568999999999999998875 333 34444 45677799998 78999995 56 445665 66666643
No 216
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.89 E-value=0.00016 Score=80.91 Aligned_cols=37 Identities=22% Similarity=0.346 Sum_probs=33.7
Q ss_pred CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCC
Q psy760 68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 105 (511)
Q Consensus 68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~ 105 (511)
...+|+|||||+||+++|..|++ .|++|+|+|+.+..
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~-~G~~V~V~E~~~~~ 362 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLAR-NGVAVTVYDRHPEI 362 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-CCCeEEEEecCCCC
Confidence 46799999999999999999999 89999999997654
No 217
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.83 E-value=8.3e-05 Score=79.50 Aligned_cols=32 Identities=34% Similarity=0.700 Sum_probs=27.5
Q ss_pred cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
+||+||||+|++|..+|.++ .|.+|+|+|++.
T Consensus 2 ~yD~vvIG~G~~g~~aa~~~---~g~~V~lie~~~ 33 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPRF---ADKRIAIVEKGT 33 (452)
T ss_pred CcCEEEECCCHHHHHHHHHH---CCCeEEEEeCCC
Confidence 59999999999999986553 599999999863
No 218
>PRK07846 mycothione reductase; Reviewed
Probab=97.81 E-value=0.00015 Score=77.52 Aligned_cols=32 Identities=34% Similarity=0.756 Sum_probs=27.9
Q ss_pred cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
+||+||||||++|..+|.++ .|.+|+|+|++.
T Consensus 1 ~yD~vVIG~G~~g~~aa~~~---~G~~V~lie~~~ 32 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDERF---ADKRIAIVEKGT 32 (451)
T ss_pred CCCEEEECCCHHHHHHHHHH---CCCeEEEEeCCC
Confidence 49999999999999988763 599999999863
No 219
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.74 E-value=0.00035 Score=74.88 Aligned_cols=32 Identities=19% Similarity=0.501 Sum_probs=30.3
Q ss_pred cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
++||||||+||+.+|.+|++ .|.+|+|+|++.
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~-~g~~V~lie~~~ 33 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQ-NGKNVTLIDEAD 33 (458)
T ss_pred eEEEECCCHHHHHHHHHHHh-CCCcEEEEECCc
Confidence 69999999999999999999 899999999874
No 220
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=97.73 E-value=0.00056 Score=62.08 Aligned_cols=32 Identities=31% Similarity=0.655 Sum_probs=27.4
Q ss_pred EEECCCcHHHHHHHHHhcC----CCCeEEEEcCCCC
Q psy760 73 IIVGAGPGGCTVANRLSEI----PHWKILLLEAGHY 104 (511)
Q Consensus 73 IVVGgG~aGl~aA~~LAe~----~G~~VLVLEaG~~ 104 (511)
+|||+|++|++++.+|.+. ...+|.|+|+.+.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence 5999999999999999874 3679999999543
No 221
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.71 E-value=3.1e-05 Score=80.90 Aligned_cols=34 Identities=26% Similarity=0.523 Sum_probs=32.0
Q ss_pred cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
++||+|||||++|+++|..|++ .|++|+|+|+.+
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~-~G~~v~l~E~~~ 36 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAK-QGRSVAVIEGGE 36 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHh-CCCcEEEEcCCC
Confidence 4899999999999999999999 899999999874
No 222
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=97.70 E-value=0.00089 Score=70.65 Aligned_cols=33 Identities=27% Similarity=0.417 Sum_probs=29.8
Q ss_pred cEEEECCCcHHHHHHHHHhcCCC-CeEEEEcCCCC
Q psy760 71 DFIIVGAGPGGCTVANRLSEIPH-WKILLLEAGHY 104 (511)
Q Consensus 71 DvIVVGgG~aGl~aA~~LAe~~G-~~VLVLEaG~~ 104 (511)
.|+|||||++|+++|..|++ .| .+|+|+||.+.
T Consensus 2 ~V~IiGgGiaGla~A~~L~~-~g~~~v~v~Er~~~ 35 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCK-HSHLNVQLFEAAPA 35 (414)
T ss_pred eEEEECCCHHHHHHHHHHHh-cCCCCEEEEecCCc
Confidence 58999999999999999998 67 59999999754
No 223
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.70 E-value=3.3e-05 Score=82.86 Aligned_cols=35 Identities=34% Similarity=0.592 Sum_probs=32.5
Q ss_pred CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
.+||+||||||+||+.+|.+|++ .|++|+|+|++.
T Consensus 3 ~~~DvvIIG~GpaG~~AA~~aa~-~G~~V~lie~~~ 37 (466)
T PRK07818 3 THYDVVVLGAGPGGYVAAIRAAQ-LGLKTAVVEKKY 37 (466)
T ss_pred CcCCEEEECCCHHHHHHHHHHHh-CCCeEEEEecCC
Confidence 36999999999999999999999 899999999863
No 224
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.69 E-value=0.00029 Score=82.16 Aligned_cols=37 Identities=27% Similarity=0.296 Sum_probs=33.8
Q ss_pred CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCC
Q psy760 68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 105 (511)
Q Consensus 68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~ 105 (511)
...+|+|||||+||+++|..|++ .|++|+|+|+.+..
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~-~G~~VtV~E~~~~~ 465 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVK-YGVDVTVYEALHVV 465 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-cCCcEEEEecCCCC
Confidence 46799999999999999999999 89999999998654
No 225
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.68 E-value=4e-05 Score=79.47 Aligned_cols=36 Identities=36% Similarity=0.642 Sum_probs=32.8
Q ss_pred ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCC
Q psy760 70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN 106 (511)
Q Consensus 70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~ 106 (511)
+|++|||||++|+++|.+|++ .|.+|+|||+.+..+
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~-~G~~V~viEk~~~iG 37 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQ-LNKRVLVVEKRNHIG 37 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHh-CCCeEEEEecCCCCC
Confidence 799999999999999999998 799999999976543
No 226
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.65 E-value=5e-05 Score=74.99 Aligned_cols=37 Identities=27% Similarity=0.539 Sum_probs=33.5
Q ss_pred cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCC
Q psy760 69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN 106 (511)
Q Consensus 69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~ 106 (511)
.||++|||+|.+|+++|..|++ .|.+||||||-+..+
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~-~gk~VLIvekR~HIG 37 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQ-LGKRVLIVEKRNHIG 37 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHH-cCCEEEEEeccccCC
Confidence 3899999999999999998888 899999999987654
No 227
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=97.64 E-value=0.00039 Score=72.48 Aligned_cols=56 Identities=21% Similarity=0.193 Sum_probs=38.2
Q ss_pred hhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHH
Q psy760 271 YIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLM 335 (511)
Q Consensus 271 ~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~ 335 (511)
.|...+++ |++++++++|++|..++ ++ .+|+.. ++. .++|+ .||+|+|+ +++.++.
T Consensus 140 ~l~~~~~~-G~~i~~~~~V~~i~~~~--~~-~~v~t~-~g~--~~~a~-~vV~a~G~-~~~~l~~ 195 (381)
T TIGR03197 140 ALLAHAGI-RLTLHFNTEITSLERDG--EG-WQLLDA-NGE--VIAAS-VVVLANGA-QAGQLAQ 195 (381)
T ss_pred HHHhccCC-CcEEEeCCEEEEEEEcC--Ce-EEEEeC-CCC--EEEcC-EEEEcCCc-ccccccc
Confidence 44445567 99999999999998765 33 334332 332 47897 69999997 4555543
No 228
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=97.64 E-value=0.00044 Score=69.05 Aligned_cols=36 Identities=25% Similarity=0.398 Sum_probs=31.8
Q ss_pred cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCC
Q psy760 69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN 106 (511)
Q Consensus 69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~ 106 (511)
.-+|.|||+|.+|+++|+.|++ -++|+|+|++....
T Consensus 8 r~~IAVIGsGisGLSAA~~Ls~--rhdVTLfEA~~rlG 43 (447)
T COG2907 8 RRKIAVIGSGISGLSAAWLLSR--RHDVTLFEADRRLG 43 (447)
T ss_pred CcceEEEcccchhhhhHHhhhc--ccceEEEecccccc
Confidence 4679999999999999999998 47999999987653
No 229
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.64 E-value=4.3e-05 Score=82.18 Aligned_cols=34 Identities=35% Similarity=0.653 Sum_probs=32.0
Q ss_pred CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcC
Q psy760 67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEA 101 (511)
Q Consensus 67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEa 101 (511)
..+||+||||||++|+++|.+|++ .|.+|+|||+
T Consensus 2 ~~~~DviIIG~G~aG~~aA~~~~~-~g~~v~lie~ 35 (475)
T PRK06327 2 SKQFDVVVIGAGPGGYVAAIRAAQ-LGLKVACIEA 35 (475)
T ss_pred CcceeEEEECCCHHHHHHHHHHHh-CCCeEEEEec
Confidence 346999999999999999999999 8999999998
No 230
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=97.62 E-value=0.0005 Score=54.85 Aligned_cols=32 Identities=25% Similarity=0.397 Sum_probs=30.0
Q ss_pred EEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760 72 FIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104 (511)
Q Consensus 72 vIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~ 104 (511)
++|||||..|+-+|..|++ .|.+|.|+|+.+.
T Consensus 2 vvViGgG~ig~E~A~~l~~-~g~~vtli~~~~~ 33 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAE-LGKEVTLIERSDR 33 (80)
T ss_dssp EEEESSSHHHHHHHHHHHH-TTSEEEEEESSSS
T ss_pred EEEECcCHHHHHHHHHHHH-hCcEEEEEeccch
Confidence 7999999999999999999 8999999999863
No 231
>PLN02576 protoporphyrinogen oxidase
Probab=97.62 E-value=5.4e-05 Score=81.84 Aligned_cols=40 Identities=28% Similarity=0.316 Sum_probs=35.7
Q ss_pred cCCcccEEEECCCcHHHHHHHHHhcCC-CCeEEEEcCCCCCC
Q psy760 66 LLLEYDFIIVGAGPGGCTVANRLSEIP-HWKILLLEAGHYFN 106 (511)
Q Consensus 66 ~~~~~DvIVVGgG~aGl~aA~~LAe~~-G~~VLVLEaG~~~~ 106 (511)
...++||||||||.+||++|++|++ . |.+|+|+|+.+...
T Consensus 9 ~~~~~~v~IIGaGisGL~aA~~L~~-~~g~~v~vlEa~~rvG 49 (496)
T PLN02576 9 AASSKDVAVVGAGVSGLAAAYALAS-KHGVNVLVTEARDRVG 49 (496)
T ss_pred ccCCCCEEEECcCHHHHHHHHHHHH-hcCCCEEEEecCCCCC
Confidence 3456899999999999999999999 7 89999999987664
No 232
>KOG0029|consensus
Probab=97.61 E-value=5.8e-05 Score=81.09 Aligned_cols=40 Identities=28% Similarity=0.415 Sum_probs=35.8
Q ss_pred cCCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCC
Q psy760 66 LLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN 106 (511)
Q Consensus 66 ~~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~ 106 (511)
..+..+|||||||+||++||..|.+ .|.+|+|||+-+..+
T Consensus 12 ~~~~~~VIVIGAGiaGLsAArqL~~-~G~~V~VLEARdRvG 51 (501)
T KOG0029|consen 12 AGKKKKVIVIGAGLAGLSAARQLQD-FGFDVLVLEARDRVG 51 (501)
T ss_pred ccCCCcEEEECCcHHHHHHHHHHHH-cCCceEEEeccCCcC
Confidence 3456899999999999999999999 899999999987664
No 233
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.58 E-value=5.7e-05 Score=80.99 Aligned_cols=33 Identities=27% Similarity=0.544 Sum_probs=31.5
Q ss_pred ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
||+||||||++|+.+|.+|++ .|++|+|+|++.
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~-~g~~v~lie~~~ 33 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAE-LGASVAMVERGP 33 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHH-CCCeEEEEeCCc
Confidence 799999999999999999999 899999999965
No 234
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.57 E-value=0.00052 Score=73.06 Aligned_cols=34 Identities=29% Similarity=0.535 Sum_probs=30.2
Q ss_pred cEEEECCCcHHHHHHHHHhcC-CCCeEEEEcCCCC
Q psy760 71 DFIIVGAGPGGCTVANRLSEI-PHWKILLLEAGHY 104 (511)
Q Consensus 71 DvIVVGgG~aGl~aA~~LAe~-~G~~VLVLEaG~~ 104 (511)
.|||||||+||+.+|.+|.+. ++.+|+|+|+.+.
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~ 37 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRD 37 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCC
Confidence 699999999999999999873 5789999999854
No 235
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.56 E-value=0.00034 Score=74.46 Aligned_cols=34 Identities=21% Similarity=0.395 Sum_probs=29.5
Q ss_pred cEEEECCCcHHHHHHHHHhcC-CCCeEEEEcCCCC
Q psy760 71 DFIIVGAGPGGCTVANRLSEI-PHWKILLLEAGHY 104 (511)
Q Consensus 71 DvIVVGgG~aGl~aA~~LAe~-~G~~VLVLEaG~~ 104 (511)
.|||||||+||+.+|.+|++. ++.+|+|+|+.+.
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~ 36 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDI 36 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCc
Confidence 589999999999999999873 4569999999853
No 236
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.56 E-value=6.8e-05 Score=81.15 Aligned_cols=34 Identities=26% Similarity=0.557 Sum_probs=31.8
Q ss_pred CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760 68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG 102 (511)
Q Consensus 68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG 102 (511)
..||+||||||+||+.+|.+|++ .|++|+|||++
T Consensus 4 ~~yDviVIG~GpaG~~AA~~aa~-~G~~V~lie~~ 37 (499)
T PTZ00052 4 FMYDLVVIGGGSGGMAAAKEAAA-HGKKVALFDYV 37 (499)
T ss_pred cccCEEEECCCHHHHHHHHHHHh-CCCeEEEEecc
Confidence 36999999999999999999999 89999999974
No 237
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=97.55 E-value=7.5e-05 Score=79.48 Aligned_cols=34 Identities=41% Similarity=0.682 Sum_probs=31.1
Q ss_pred ccEEEECCCcHHHHHHHHHhcC---CCCeEEEEcCCC
Q psy760 70 YDFIIVGAGPGGCTVANRLSEI---PHWKILLLEAGH 103 (511)
Q Consensus 70 ~DvIVVGgG~aGl~aA~~LAe~---~G~~VLVLEaG~ 103 (511)
|||||||||++|+++|+.|++. .|.+|+|||+.+
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~ 37 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVD 37 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCC
Confidence 7999999999999999999973 499999999964
No 238
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.54 E-value=7e-05 Score=80.20 Aligned_cols=34 Identities=41% Similarity=0.727 Sum_probs=31.8
Q ss_pred CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760 68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG 102 (511)
Q Consensus 68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG 102 (511)
.+||+||||||++|+.+|.+|++ .|++|+|+|++
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~-~g~~v~lie~~ 35 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAK-LGKKVALIEKG 35 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHH-CCCeEEEEeCC
Confidence 35999999999999999999999 89999999994
No 239
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=97.53 E-value=0.0029 Score=65.87 Aligned_cols=59 Identities=29% Similarity=0.289 Sum_probs=41.7
Q ss_pred HhhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHHhcC
Q psy760 270 DYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSG 338 (511)
Q Consensus 270 ~~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~~SG 338 (511)
.+.....++.|++|++++.|++|.-+ +|.+..+++ +|.++ .||-|||.-.+|-+-.++|
T Consensus 213 ~~a~~~L~~~GV~v~l~~~Vt~v~~~-------~v~~~~g~~--~I~~~-tvvWaaGv~a~~~~~~l~~ 271 (405)
T COG1252 213 KYAERALEKLGVEVLLGTPVTEVTPD-------GVTLKDGEE--EIPAD-TVVWAAGVRASPLLKDLSG 271 (405)
T ss_pred HHHHHHHHHCCCEEEcCCceEEECCC-------cEEEccCCe--eEecC-EEEEcCCCcCChhhhhcCh
Confidence 35555667899999999999999644 576665443 68897 6999999755543333344
No 240
>PLN02268 probable polyamine oxidase
Probab=97.51 E-value=8.9e-05 Score=78.74 Aligned_cols=36 Identities=28% Similarity=0.497 Sum_probs=33.2
Q ss_pred cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCCc
Q psy760 71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNY 107 (511)
Q Consensus 71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~~ 107 (511)
+|||||||.+|+++|++|.+ .|++|+|||+.+....
T Consensus 2 ~VvVIGaGisGL~aA~~L~~-~g~~v~vlEa~~r~GG 37 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHD-ASFKVTLLESRDRIGG 37 (435)
T ss_pred CEEEECCCHHHHHHHHHHHh-CCCeEEEEeCCCCCCc
Confidence 79999999999999999998 8999999999887653
No 241
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=97.51 E-value=7.9e-05 Score=79.27 Aligned_cols=35 Identities=34% Similarity=0.451 Sum_probs=31.7
Q ss_pred cEEEECCCcHHHHHHHHHhcCCC--CeEEEEcCCCCCC
Q psy760 71 DFIIVGAGPGGCTVANRLSEIPH--WKILLLEAGHYFN 106 (511)
Q Consensus 71 DvIVVGgG~aGl~aA~~LAe~~G--~~VLVLEaG~~~~ 106 (511)
+|||||||++|+++|+.|++ .| ++|+|+|+.+..+
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~-~G~~~~V~vlEa~~~~G 38 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHK-KGPDADITLLEASDRLG 38 (451)
T ss_pred eEEEECCCHHHHHHHHHHHH-hCCCCCEEEEEcCCCCc
Confidence 59999999999999999999 66 8999999987664
No 242
>KOG0405|consensus
Probab=97.51 E-value=0.00071 Score=67.56 Aligned_cols=36 Identities=28% Similarity=0.547 Sum_probs=33.3
Q ss_pred cCCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760 66 LLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG 102 (511)
Q Consensus 66 ~~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG 102 (511)
...+||+.|||||.+|..+|.+.|+ .|.+|.|+|..
T Consensus 17 ~~k~fDylvIGgGSGGvasARrAa~-~GAkv~l~E~~ 52 (478)
T KOG0405|consen 17 DVKDFDYLVIGGGSGGVASARRAAS-HGAKVALCELP 52 (478)
T ss_pred cccccceEEEcCCcchhHHhHHHHh-cCceEEEEecC
Confidence 3458999999999999999999999 89999999986
No 243
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.49 E-value=9.2e-05 Score=77.03 Aligned_cols=33 Identities=45% Similarity=0.762 Sum_probs=30.5
Q ss_pred cEEEECCCcHHHHHHHHHhcC-CCCeEEEEcCCC
Q psy760 71 DFIIVGAGPGGCTVANRLSEI-PHWKILLLEAGH 103 (511)
Q Consensus 71 DvIVVGgG~aGl~aA~~LAe~-~G~~VLVLEaG~ 103 (511)
||||||||+||+++|.+|++. +|++|+|||+++
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~ 34 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGR 34 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 899999999999999999982 499999999985
No 244
>PRK13748 putative mercuric reductase; Provisional
Probab=97.48 E-value=9.4e-05 Score=81.27 Aligned_cols=35 Identities=20% Similarity=0.340 Sum_probs=32.6
Q ss_pred CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
..||+||||||++|+.+|.+|++ .|.+|+|+|++.
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~-~G~~v~lie~~~ 131 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVE-QGARVTLIERGT 131 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHh-CCCeEEEEecCc
Confidence 36999999999999999999999 899999999973
No 245
>PLN02676 polyamine oxidase
Probab=97.47 E-value=0.00022 Score=76.88 Aligned_cols=38 Identities=42% Similarity=0.506 Sum_probs=34.0
Q ss_pred CcccEEEECCCcHHHHHHHHHhcCCCC-eEEEEcCCCCCC
Q psy760 68 LEYDFIIVGAGPGGCTVANRLSEIPHW-KILLLEAGHYFN 106 (511)
Q Consensus 68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~-~VLVLEaG~~~~ 106 (511)
..+||||||||.+|+++|.+|++ .|. +|+|||+.....
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~-~g~~~v~vlE~~~~~G 63 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSE-AGIEDILILEATDRIG 63 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHH-cCCCcEEEecCCCCCC
Confidence 46899999999999999999999 787 699999987654
No 246
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=97.45 E-value=0.00011 Score=78.70 Aligned_cols=36 Identities=25% Similarity=0.364 Sum_probs=33.1
Q ss_pred ccEEEECCCcHHHHHHHHHhcCC----CCeEEEEcCCCCCC
Q psy760 70 YDFIIVGAGPGGCTVANRLSEIP----HWKILLLEAGHYFN 106 (511)
Q Consensus 70 ~DvIVVGgG~aGl~aA~~LAe~~----G~~VLVLEaG~~~~ 106 (511)
.||||||||++|+++|++|++ . |++|+|+|+.+...
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~-~~~~~g~~v~vlE~~~r~G 42 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEK-EIPELPVELTLVEASDRVG 42 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHh-cCCCCCCcEEEEEcCCcCc
Confidence 689999999999999999998 5 99999999987664
No 247
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.45 E-value=0.00011 Score=79.29 Aligned_cols=34 Identities=18% Similarity=0.486 Sum_probs=31.7
Q ss_pred CcccEEEECCCcHHHHHHHHHhcCC-CCeEEEEcCC
Q psy760 68 LEYDFIIVGAGPGGCTVANRLSEIP-HWKILLLEAG 102 (511)
Q Consensus 68 ~~~DvIVVGgG~aGl~aA~~LAe~~-G~~VLVLEaG 102 (511)
.+||+||||||++|..+|.++++ . |.+|+|+|++
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~-~~g~~V~lie~~ 36 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAAT-LYKKRVAVIDVQ 36 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHH-hcCCEEEEEecc
Confidence 46999999999999999999999 6 8999999984
No 248
>KOG0404|consensus
Probab=97.41 E-value=0.00057 Score=64.25 Aligned_cols=69 Identities=25% Similarity=0.255 Sum_probs=44.7
Q ss_pred hhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHHhcCCCCccccccCCC
Q psy760 271 YIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNI 350 (511)
Q Consensus 271 ~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~~SGIGp~~~L~~~gi 350 (511)
-++..+.+.|.+|++++ |.++.++.. -..+..+.+ .++|+ .||+|+|+ |.+-|.+-|-|..+ ..+.||
T Consensus 75 ~mrkqs~r~Gt~i~tEt-Vskv~~ssk-----pF~l~td~~--~v~~~-avI~atGA--sAkRl~~pg~ge~~-fWqrGi 142 (322)
T KOG0404|consen 75 KMRKQSERFGTEIITET-VSKVDLSSK-----PFKLWTDAR--PVTAD-AVILATGA--SAKRLHLPGEGEGE-FWQRGI 142 (322)
T ss_pred HHHHHHHhhcceeeeee-hhhccccCC-----CeEEEecCC--ceeee-eEEEeccc--ceeeeecCCCCcch-HHhccc
Confidence 44445667899998875 788877652 222333322 68897 79999999 88777766655433 445555
Q ss_pred C
Q psy760 351 P 351 (511)
Q Consensus 351 ~ 351 (511)
.
T Consensus 143 S 143 (322)
T KOG0404|consen 143 S 143 (322)
T ss_pred c
Confidence 3
No 249
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.41 E-value=0.00016 Score=67.83 Aligned_cols=32 Identities=38% Similarity=0.727 Sum_probs=30.2
Q ss_pred cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
||||||||+||+.+|.+|++ .+.+|+|+|+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~-~~~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELAR-PGAKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHH-TTSEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhc-CCCeEEEEeccc
Confidence 79999999999999999998 899999998875
No 250
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.38 E-value=0.0045 Score=65.30 Aligned_cols=53 Identities=17% Similarity=0.179 Sum_probs=39.2
Q ss_pred hhCCCcEEEeCceEEEEEEcCCC--CcEEEEEEEECCeEE--EEEeCcEEEEccCCC
Q psy760 276 KKRCNLTVKDSSFVKKILIDPVT--KKACGVLATIKGIDH--KILARKEVILSAGAF 328 (511)
Q Consensus 276 ~~r~gv~v~~~t~V~~I~~d~~~--~ra~GV~~~~~g~~~--~v~A~k~VILAAGa~ 328 (511)
.+..||++..+++|+.|.++.++ ..|+++++..+|+.. .+..+.-|++..|+.
T Consensus 217 L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~~~g~~~~i~l~~~DlV~vT~GS~ 273 (500)
T PF06100_consen 217 LKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIEQDGKEETIDLGPDDLVFVTNGSM 273 (500)
T ss_pred HHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEEcCCCeeEEEeCCCCEEEEECCcc
Confidence 46789999999999999997542 457788887666544 445555677777764
No 251
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.34 E-value=0.00017 Score=80.17 Aligned_cols=34 Identities=32% Similarity=0.519 Sum_probs=32.0
Q ss_pred CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760 68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG 102 (511)
Q Consensus 68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG 102 (511)
.+||+||||+|++|..+|.++++ .|.+|+|+|++
T Consensus 115 ~~yDviVIG~G~gG~~aA~~aa~-~G~kV~lie~~ 148 (659)
T PTZ00153 115 EEYDVGIIGCGVGGHAAAINAME-RGLKVIIFTGD 148 (659)
T ss_pred ccCCEEEECCCHHHHHHHHHHHH-CCCcEEEEeCC
Confidence 37999999999999999999999 89999999975
No 252
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.33 E-value=0.0024 Score=66.50 Aligned_cols=58 Identities=16% Similarity=0.070 Sum_probs=41.0
Q ss_pred hhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHHhcCCC
Q psy760 276 KKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIG 340 (511)
Q Consensus 276 ~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~~SGIG 340 (511)
.++.|+++++++.|++|..++ +. ..|.+ .+++ ++.++ .||+|+|.-..+.++..+|+.
T Consensus 193 l~~~gV~i~~~~~v~~i~~~~--~~-~~v~~-~~g~--~i~~D-~vI~a~G~~p~~~l~~~~gl~ 250 (377)
T PRK04965 193 LTEMGVHLLLKSQLQGLEKTD--SG-IRATL-DSGR--SIEVD-AVIAAAGLRPNTALARRAGLA 250 (377)
T ss_pred HHhCCCEEEECCeEEEEEccC--CE-EEEEE-cCCc--EEECC-EEEECcCCCcchHHHHHCCCC
Confidence 456799999999999997654 22 23443 2343 68897 699999986556677777763
No 253
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.32 E-value=0.00019 Score=75.54 Aligned_cols=36 Identities=28% Similarity=0.401 Sum_probs=33.2
Q ss_pred cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCCc
Q psy760 71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNY 107 (511)
Q Consensus 71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~~ 107 (511)
-|+|+|||.||+++|+.||+ +|++|+|+|+++..+.
T Consensus 2 rVai~GaG~AgL~~a~~La~-~g~~vt~~ea~~~~GG 37 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELAD-AGYDVTLYEARDRLGG 37 (485)
T ss_pred eEEEEcccHHHHHHHHHHHh-CCCceEEEeccCccCc
Confidence 38999999999999999999 8999999999987754
No 254
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.28 E-value=0.00022 Score=74.52 Aligned_cols=35 Identities=23% Similarity=0.221 Sum_probs=32.2
Q ss_pred ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCC
Q psy760 70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 105 (511)
Q Consensus 70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~ 105 (511)
-||+|||||.+||.+|+.||+ .|.+|+|+|+.+..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr-~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAK-RGVPVELYEMRPVK 37 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHh-CCCcEEEEEccCcc
Confidence 489999999999999999999 89999999987653
No 255
>PLN02568 polyamine oxidase
Probab=97.26 E-value=0.0003 Score=76.71 Aligned_cols=38 Identities=29% Similarity=0.527 Sum_probs=33.6
Q ss_pred CcccEEEECCCcHHHHHHHHHhcCCC-----CeEEEEcCCCCCC
Q psy760 68 LEYDFIIVGAGPGGCTVANRLSEIPH-----WKILLLEAGHYFN 106 (511)
Q Consensus 68 ~~~DvIVVGgG~aGl~aA~~LAe~~G-----~~VLVLEaG~~~~ 106 (511)
+..||||||+|++|+++|.+|++ .| .+|+|+|+.....
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~-~g~~~~~~~v~v~E~~~~~G 46 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYT-SSAANDMFELTVVEGGDRIG 46 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHh-cccccCCceEEEEeCCCCcC
Confidence 35799999999999999999998 55 8999999987654
No 256
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.23 E-value=0.0028 Score=66.48 Aligned_cols=33 Identities=27% Similarity=0.421 Sum_probs=30.3
Q ss_pred ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
-.++|||+|..|+-+|..|++ .|.+|+|+|+++
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~-~g~~Vtlv~~~~ 177 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQ-RRCKVTVIELAA 177 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHH-cCCeEEEEecCC
Confidence 369999999999999999998 899999999875
No 257
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=97.21 E-value=0.00036 Score=77.24 Aligned_cols=37 Identities=19% Similarity=0.317 Sum_probs=34.0
Q ss_pred cCCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 66 LLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 66 ~~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
..+.++|+|||||++|+++|..|++ .|++|+|+||.+
T Consensus 78 ~~~~~~VlIVGgGIaGLalAlaL~r-~Gi~V~V~Er~~ 114 (668)
T PLN02927 78 KKKKSRVLVAGGGIGGLVFALAAKK-KGFDVLVFEKDL 114 (668)
T ss_pred ccCCCCEEEECCCHHHHHHHHHHHh-cCCeEEEEeccc
Confidence 3567999999999999999999999 899999999975
No 258
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.14 E-value=0.0004 Score=68.88 Aligned_cols=58 Identities=17% Similarity=0.110 Sum_probs=46.5
Q ss_pred hHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHH
Q psy760 272 IDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKL 333 (511)
Q Consensus 272 L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~L 333 (511)
|...-++.|..++.+-+|.+..+.+ ++++.|.++ +.....++|+ .+|||+|+|-|--|
T Consensus 264 L~~~f~~~Gg~~m~Gd~V~~a~~~~--~~v~~i~tr-n~~diP~~a~-~~VLAsGsffskGL 321 (421)
T COG3075 264 LQRQFEQLGGLWMPGDEVKKATCKG--GRVTEIYTR-NHADIPLRAD-FYVLASGSFFSKGL 321 (421)
T ss_pred HHHHHHHcCceEecCCceeeeeeeC--CeEEEEEec-ccccCCCChh-Heeeeccccccccc
Confidence 4444567899999999999999887 789988766 4555689997 79999999877543
No 259
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.13 E-value=0.0018 Score=67.51 Aligned_cols=34 Identities=21% Similarity=0.390 Sum_probs=29.7
Q ss_pred ccEEEECCCcHHHHHHHHHhcC-CCCeEEEEcCCC
Q psy760 70 YDFIIVGAGPGGCTVANRLSEI-PHWKILLLEAGH 103 (511)
Q Consensus 70 ~DvIVVGgG~aGl~aA~~LAe~-~G~~VLVLEaG~ 103 (511)
.||||||||+||+.+|.+|.+. +..+|+|+++.+
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~ 37 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADS 37 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCC
Confidence 4899999999999999999873 667899998864
No 260
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.13 E-value=0.0019 Score=67.78 Aligned_cols=33 Identities=24% Similarity=0.425 Sum_probs=29.0
Q ss_pred ccEEEECCCcHHHHHHHHHhcCCCC--eEEEEcCCC
Q psy760 70 YDFIIVGAGPGGCTVANRLSEIPHW--KILLLEAGH 103 (511)
Q Consensus 70 ~DvIVVGgG~aGl~aA~~LAe~~G~--~VLVLEaG~ 103 (511)
.+|||||||+||+.+|..|++ .+. +|+|+|+.+
T Consensus 4 ~~vvIIGgG~AG~~aA~~Lr~-~~~~~~I~li~~e~ 38 (396)
T PRK09754 4 KTIIIVGGGQAAAMAAASLRQ-QGFTGELHLFSDER 38 (396)
T ss_pred CcEEEECChHHHHHHHHHHHh-hCCCCCEEEeCCCC
Confidence 579999999999999999998 454 899999874
No 261
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.13 E-value=0.0007 Score=78.08 Aligned_cols=37 Identities=19% Similarity=0.301 Sum_probs=33.9
Q ss_pred CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCC
Q psy760 68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 105 (511)
Q Consensus 68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~ 105 (511)
..+||+|||||+||+++|+.|++ .|++|+|+|+.+..
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr-~G~~VTV~Ek~~~l 572 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLAR-AGHPVTVFEKKEKP 572 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHH-CCCeEEEEeccccc
Confidence 45899999999999999999999 89999999998654
No 262
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.12 E-value=0.00039 Score=74.46 Aligned_cols=37 Identities=19% Similarity=0.424 Sum_probs=31.7
Q ss_pred cEEEECCCcHHHHHHHHHhcC-----CCCeEEEEcCCCCCCc
Q psy760 71 DFIIVGAGPGGCTVANRLSEI-----PHWKILLLEAGHYFNY 107 (511)
Q Consensus 71 DvIVVGgG~aGl~aA~~LAe~-----~G~~VLVLEaG~~~~~ 107 (511)
+|||||||++|+++|++|++. .|.+|+|||+.+....
T Consensus 3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GG 44 (463)
T PRK12416 3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGG 44 (463)
T ss_pred eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccc
Confidence 599999999999999999983 1479999999877643
No 263
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=97.05 E-value=0.0051 Score=65.85 Aligned_cols=33 Identities=21% Similarity=0.290 Sum_probs=30.4
Q ss_pred ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
-+++|||||.+|+-+|..|++ .|.+|+|+|+++
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~-~g~~Vtli~~~~ 203 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFAS-LGSKVTVIEMLD 203 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHH-cCCcEEEEEcCC
Confidence 479999999999999999999 799999999874
No 264
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.04 E-value=0.00054 Score=71.98 Aligned_cols=34 Identities=21% Similarity=0.305 Sum_probs=31.4
Q ss_pred ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760 70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104 (511)
Q Consensus 70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~ 104 (511)
.||+|||||.+||.+|..||+ .|.+|+|+|+.+.
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr-~G~~V~LiE~rp~ 34 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQ-AGVPVILYEMRPE 34 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHh-CCCcEEEEecccc
Confidence 389999999999999999999 8999999998764
No 265
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.02 E-value=0.01 Score=61.39 Aligned_cols=35 Identities=17% Similarity=0.395 Sum_probs=30.0
Q ss_pred cEEEECCCcHHHHHHHHHhc--CCCCeEEEEcCCCCC
Q psy760 71 DFIIVGAGPGGCTVANRLSE--IPHWKILLLEAGHYF 105 (511)
Q Consensus 71 DvIVVGgG~aGl~aA~~LAe--~~G~~VLVLEaG~~~ 105 (511)
.|||||||.||+.+|.+|.+ .++.+|+|+|+....
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~ 37 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTT 37 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCC
Confidence 38999999999999999964 257899999988754
No 266
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.02 E-value=0.0072 Score=64.73 Aligned_cols=32 Identities=31% Similarity=0.484 Sum_probs=29.7
Q ss_pred cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
.++|||||.+|+-+|..|++ .|.+|+|+|+++
T Consensus 172 ~vvIIGgG~iG~E~A~~l~~-~g~~Vtli~~~~ 203 (458)
T PRK06912 172 SLLIVGGGVIGCEFASIYSR-LGTKVTIVEMAP 203 (458)
T ss_pred cEEEECCCHHHHHHHHHHHH-cCCeEEEEecCC
Confidence 69999999999999999998 799999999874
No 267
>PRK12831 putative oxidoreductase; Provisional
Probab=97.00 E-value=0.00078 Score=72.27 Aligned_cols=38 Identities=26% Similarity=0.406 Sum_probs=34.2
Q ss_pred CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCC
Q psy760 67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 105 (511)
Q Consensus 67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~ 105 (511)
....||+|||||+||+++|.+|++ .|++|+|+|+.+..
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~-~G~~V~v~e~~~~~ 175 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAK-MGYDVTIFEALHEP 175 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHh-CCCeEEEEecCCCC
Confidence 456899999999999999999999 89999999987643
No 268
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=96.99 E-value=0.0057 Score=65.57 Aligned_cols=33 Identities=15% Similarity=0.342 Sum_probs=30.3
Q ss_pred ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
-.++|||+|..|+-+|..|++ .|.+|+|+|+++
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~-~g~~Vtli~~~~ 199 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFAR-LGSEVTILQRSD 199 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHH-cCCcEEEEEcCC
Confidence 469999999999999999998 799999999874
No 269
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=96.97 E-value=0.0013 Score=70.29 Aligned_cols=38 Identities=26% Similarity=0.403 Sum_probs=34.2
Q ss_pred CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCC
Q psy760 67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 105 (511)
Q Consensus 67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~ 105 (511)
...+||+|||||++|+.+|..|++ .|++|+|+|+.+..
T Consensus 131 ~~~~~V~IIG~G~aGl~aA~~l~~-~G~~V~vie~~~~~ 168 (449)
T TIGR01316 131 STHKKVAVIGAGPAGLACASELAK-AGHSVTVFEALHKP 168 (449)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHH-CCCcEEEEecCCCC
Confidence 356899999999999999999999 89999999997643
No 270
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=96.96 E-value=0.0089 Score=64.07 Aligned_cols=32 Identities=19% Similarity=0.307 Sum_probs=29.6
Q ss_pred cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
.++|||+|..|+-+|..|++ .|.+|+|+|+++
T Consensus 174 ~vvVvGgG~~g~E~A~~l~~-~g~~Vtli~~~~ 205 (462)
T PRK06416 174 SLVVIGGGYIGVEFASAYAS-LGAEVTIVEALP 205 (462)
T ss_pred eEEEECCCHHHHHHHHHHHH-cCCeEEEEEcCC
Confidence 68999999999999999998 799999999875
No 271
>KOG2614|consensus
Probab=96.94 E-value=0.00083 Score=68.82 Aligned_cols=34 Identities=29% Similarity=0.389 Sum_probs=31.4
Q ss_pred cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
+-+|||||||++|+++|..|++ .|++|+|+|+..
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r-~G~~v~VlE~~e 35 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHR-KGIDVVVLESRE 35 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHH-cCCeEEEEeecc
Confidence 4579999999999999999999 899999999954
No 272
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=96.94 E-value=0.0083 Score=64.42 Aligned_cols=32 Identities=25% Similarity=0.282 Sum_probs=29.5
Q ss_pred cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
.++|||+|..|+-+|..|++ .|.+|.|+|+++
T Consensus 174 ~vvVIGgG~ig~E~A~~l~~-~G~~Vtlv~~~~ 205 (466)
T PRK07818 174 SIVIAGAGAIGMEFAYVLKN-YGVDVTIVEFLD 205 (466)
T ss_pred eEEEECCcHHHHHHHHHHHH-cCCeEEEEecCC
Confidence 68999999999999999998 799999999874
No 273
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=96.90 E-value=0.0079 Score=64.03 Aligned_cols=57 Identities=21% Similarity=0.283 Sum_probs=40.5
Q ss_pred hhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHHhcCC
Q psy760 275 IKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGI 339 (511)
Q Consensus 275 ~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~~SGI 339 (511)
..++.|++++++++|++|..+ +++.++.. +++ ++.++ .||+|+|..-+..+|..+|+
T Consensus 200 ~l~~~gI~v~~~~~v~~i~~~---~~~~~v~~--~~~--~i~~d-~vi~a~G~~p~~~~l~~~gl 256 (444)
T PRK09564 200 ELRENGVELHLNEFVKSLIGE---DKVEGVVT--DKG--EYEAD-VVIVATGVKPNTEFLEDTGL 256 (444)
T ss_pred HHHHCCCEEEcCCEEEEEecC---CcEEEEEe--CCC--EEEcC-EEEECcCCCcCHHHHHhcCc
Confidence 345678999999999999532 34444443 233 58897 69999998655667877776
No 274
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=96.90 E-value=0.011 Score=63.59 Aligned_cols=33 Identities=27% Similarity=0.363 Sum_probs=30.4
Q ss_pred ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
-.++|||||.+|+-+|..|++ .|.+|+|+|+++
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~-~g~~Vtli~~~~ 213 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLAD-FGVEVTVVEAAD 213 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHH-cCCeEEEEEecC
Confidence 369999999999999999999 899999999875
No 275
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=96.89 E-value=0.00083 Score=70.82 Aligned_cols=35 Identities=29% Similarity=0.455 Sum_probs=31.5
Q ss_pred cEEEECCCcHHHHHHHHHhcCCC--CeEEEEcCCCCCC
Q psy760 71 DFIIVGAGPGGCTVANRLSEIPH--WKILLLEAGHYFN 106 (511)
Q Consensus 71 DvIVVGgG~aGl~aA~~LAe~~G--~~VLVLEaG~~~~ 106 (511)
-++|||||.+||++|++|++ .+ ..|+|+|+++...
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k-~~p~~~i~lfE~~~r~G 38 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQK-AGPDVEVTLFEADDRVG 38 (444)
T ss_pred eEEEECCcHHHHHHHHHHHH-hCCCCcEEEEecCCCCC
Confidence 38999999999999999999 56 9999999997664
No 276
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=96.89 E-value=0.012 Score=64.18 Aligned_cols=57 Identities=18% Similarity=0.192 Sum_probs=44.0
Q ss_pred CCCcEEEeCceEEEEEEcCCCCcEEEEEEEE--CCeEEEEEeCcEEEEccCCCCcHHHHHhc
Q psy760 278 RCNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNSPKLLMLS 337 (511)
Q Consensus 278 r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~--~g~~~~v~A~k~VILAAGa~~SP~LL~~S 337 (511)
..|+++++++.|++|.-++ +++++|++.. ++++.++.++ .|++|.|..-.+.++..+
T Consensus 399 ~~gI~i~~~~~v~~i~~~~--g~v~~v~~~~~~~g~~~~i~~D-~v~~~~G~~p~~~~l~~~ 457 (517)
T PRK15317 399 LPNVTIITNAQTTEVTGDG--DKVTGLTYKDRTTGEEHHLELE-GVFVQIGLVPNTEWLKGT 457 (517)
T ss_pred CCCcEEEECcEEEEEEcCC--CcEEEEEEEECCCCcEEEEEcC-EEEEeECCccCchHHhhh
Confidence 4699999999999997553 6788888763 4555579998 799999986656666543
No 277
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=96.87 E-value=0.0017 Score=69.90 Aligned_cols=38 Identities=24% Similarity=0.437 Sum_probs=34.4
Q ss_pred CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCC
Q psy760 67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 105 (511)
Q Consensus 67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~ 105 (511)
....+|+|||+|++|+.+|..|++ .|++|+|+|+.+..
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~-~G~~V~vie~~~~~ 178 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLAR-AGHKVTVFERADRI 178 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHh-CCCcEEEEecCCCC
Confidence 356899999999999999999999 89999999998654
No 278
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.002 Score=64.37 Aligned_cols=30 Identities=27% Similarity=0.417 Sum_probs=26.4
Q ss_pred CCcccEEEECCCcHHHHHHHHHhcCCCCeEE
Q psy760 67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKIL 97 (511)
Q Consensus 67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VL 97 (511)
...|||+|||||+||.++|.+.|+ .|.|.-
T Consensus 209 k~~yDVLvVGgGPAgaaAAiYaAR-KGiRTG 238 (520)
T COG3634 209 KDAYDVLVVGGGPAGAAAAIYAAR-KGIRTG 238 (520)
T ss_pred cCCceEEEEcCCcchhHHHHHHHh-hcchhh
Confidence 356999999999999999999999 788753
No 279
>PRK06370 mercuric reductase; Validated
Probab=96.85 E-value=0.01 Score=63.63 Aligned_cols=33 Identities=21% Similarity=0.328 Sum_probs=30.2
Q ss_pred ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
-.++|||+|..|+-+|..|++ .|.+|.|+|+++
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~-~G~~Vtli~~~~ 204 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRR-FGSEVTVIERGP 204 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHH-cCCeEEEEEcCC
Confidence 368999999999999999999 899999999874
No 280
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=96.84 E-value=0.0082 Score=68.95 Aligned_cols=60 Identities=17% Similarity=0.171 Sum_probs=42.6
Q ss_pred hhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHHhcCC
Q psy760 275 IKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGI 339 (511)
Q Consensus 275 ~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~~SGI 339 (511)
..++.|++|++++.|++|.-+++ +....|.+. +++ .+.++ .||+|+|.--+..|+..+|+
T Consensus 196 ~L~~~GV~v~~~~~v~~I~~~~~-~~~~~v~~~-dG~--~i~~D-~Vv~A~G~rPn~~L~~~~Gl 255 (847)
T PRK14989 196 KIESMGVRVHTSKNTLEIVQEGV-EARKTMRFA-DGS--ELEVD-FIVFSTGIRPQDKLATQCGL 255 (847)
T ss_pred HHHHCCCEEEcCCeEEEEEecCC-CceEEEEEC-CCC--EEEcC-EEEECCCcccCchHHhhcCc
Confidence 34567999999999999975432 344455554 344 68898 69999998555566666775
No 281
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=96.83 E-value=0.013 Score=62.55 Aligned_cols=31 Identities=13% Similarity=0.153 Sum_probs=29.0
Q ss_pred cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760 71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAG 102 (511)
Q Consensus 71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG 102 (511)
.|+|||||..|+-+|..|++ .|.+|.|+++.
T Consensus 274 ~VvVIGgG~~a~d~A~~l~~-~G~~Vtlv~~~ 304 (449)
T TIGR01316 274 SVVVIGGGNTAVDSARTALR-LGAEVHCLYRR 304 (449)
T ss_pred eEEEECCCHHHHHHHHHHHH-cCCEEEEEeec
Confidence 69999999999999999999 79999999876
No 282
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=96.82 E-value=0.015 Score=63.27 Aligned_cols=56 Identities=18% Similarity=0.169 Sum_probs=41.8
Q ss_pred CCCcEEEeCceEEEEEEcCCCCcEEEEEEEE--CCeEEEEEeCcEEEEccCCCCcHHHHHh
Q psy760 278 RCNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNSPKLLML 336 (511)
Q Consensus 278 r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~--~g~~~~v~A~k~VILAAGa~~SP~LL~~ 336 (511)
+.|++|++++.|+++.-++ +++++|++.. .++..++.++ .||+|.|..-+..+|..
T Consensus 400 ~~gV~i~~~~~v~~i~~~~--~~v~~v~~~~~~~~~~~~i~~D-~vi~a~G~~Pn~~~l~~ 457 (515)
T TIGR03140 400 LPNVDILTSAQTTEIVGDG--DKVTGIRYQDRNSGEEKQLDLD-GVFVQIGLVPNTEWLKD 457 (515)
T ss_pred CCCCEEEECCeeEEEEcCC--CEEEEEEEEECCCCcEEEEEcC-EEEEEeCCcCCchHHhh
Confidence 3699999999999997543 5777888764 2444578998 69999998555566643
No 283
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=96.82 E-value=0.011 Score=62.70 Aligned_cols=33 Identities=24% Similarity=0.377 Sum_probs=30.0
Q ss_pred ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
-.++|||+|.+|+-+|..|++ .|.+|.++++++
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~-~g~~Vtli~~~~ 170 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRE-RGKNVTLIHRSE 170 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHh-CCCcEEEEECCc
Confidence 369999999999999999998 799999999874
No 284
>PLN02529 lysine-specific histone demethylase 1
Probab=96.81 E-value=0.0013 Score=73.90 Aligned_cols=39 Identities=33% Similarity=0.370 Sum_probs=34.9
Q ss_pred CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCC
Q psy760 67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN 106 (511)
Q Consensus 67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~ 106 (511)
....||+|||+|++|+.+|..|++ .|++|+|+|+.+...
T Consensus 158 ~~~~~v~viGaG~aGl~aA~~l~~-~g~~v~v~E~~~~~G 196 (738)
T PLN02529 158 GTEGSVIIVGAGLAGLAAARQLLS-FGFKVVVLEGRNRPG 196 (738)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHH-cCCcEEEEecCccCc
Confidence 356899999999999999999999 899999999977653
No 285
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=96.81 E-value=0.0093 Score=63.47 Aligned_cols=32 Identities=25% Similarity=0.310 Sum_probs=30.0
Q ss_pred cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
.++|||+|.+|+-+|..|++ .|.+|+|+|+++
T Consensus 159 ~vvIIGgG~~g~e~A~~l~~-~g~~Vtli~~~~ 190 (438)
T PRK07251 159 RLGIIGGGNIGLEFAGLYNK-LGSKVTVLDAAS 190 (438)
T ss_pred eEEEECCCHHHHHHHHHHHH-cCCeEEEEecCC
Confidence 69999999999999999998 899999999875
No 286
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=96.80 E-value=0.0088 Score=68.40 Aligned_cols=57 Identities=21% Similarity=0.149 Sum_probs=41.6
Q ss_pred hhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHHhcCC
Q psy760 276 KKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGI 339 (511)
Q Consensus 276 ~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~~SGI 339 (511)
.++.|++|++++.|++|.-+ +++.+|++.+ |+ ++.++ .||+|+|.--+..++..+|+
T Consensus 192 l~~~GV~v~~~~~v~~i~~~---~~~~~v~~~d-G~--~i~~D-~Vi~a~G~~Pn~~la~~~gl 248 (785)
T TIGR02374 192 LEQKGLTFLLEKDTVEIVGA---TKADRIRFKD-GS--SLEAD-LIVMAAGIRPNDELAVSAGI 248 (785)
T ss_pred HHHcCCEEEeCCceEEEEcC---CceEEEEECC-CC--EEEcC-EEEECCCCCcCcHHHHhcCC
Confidence 45679999999999998643 4566776653 43 68898 69999998555556666665
No 287
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=96.74 E-value=0.0017 Score=73.41 Aligned_cols=39 Identities=26% Similarity=0.380 Sum_probs=34.8
Q ss_pred CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCC
Q psy760 67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN 106 (511)
Q Consensus 67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~ 106 (511)
....+|||||||++|+++|..|++ .|++|+|+|+....+
T Consensus 236 ~~~~~v~IiGaG~aGl~aA~~L~~-~g~~v~v~E~~~r~G 274 (808)
T PLN02328 236 VEPANVVVVGAGLAGLVAARQLLS-MGFKVVVLEGRARPG 274 (808)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHH-CCCcEEEEeccccCC
Confidence 346899999999999999999999 899999999986653
No 288
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=96.73 E-value=0.0013 Score=76.09 Aligned_cols=38 Identities=26% Similarity=0.401 Sum_probs=34.3
Q ss_pred CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCC
Q psy760 68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN 106 (511)
Q Consensus 68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~ 106 (511)
...+|+|||||+||+++|..|++ .|++|+|+|+.+...
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar-~G~~VtVfE~~~~~G 342 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAV-EGFPVTVFEAFHDLG 342 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHH-CCCeEEEEeeCCCCC
Confidence 45789999999999999999999 899999999986543
No 289
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=96.71 E-value=0.0024 Score=73.51 Aligned_cols=38 Identities=21% Similarity=0.288 Sum_probs=34.1
Q ss_pred CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCC
Q psy760 67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 105 (511)
Q Consensus 67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~ 105 (511)
....+|+|||||+||+++|+.|++ .|++|+|+|+.+..
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar-~G~~VtV~Ek~~~~ 574 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLAR-AGHPVTVFEREENA 574 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHH-cCCeEEEEeccccc
Confidence 345799999999999999999999 89999999998654
No 290
>PRK10262 thioredoxin reductase; Provisional
Probab=96.66 E-value=0.028 Score=57.04 Aligned_cols=56 Identities=9% Similarity=0.088 Sum_probs=40.0
Q ss_pred hhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEEC---CeEEEEEeCcEEEEccCCCCcHHHH
Q psy760 276 KKRCNLTVKDSSFVKKILIDPVTKKACGVLATIK---GIDHKILARKEVILSAGAFNSPKLL 334 (511)
Q Consensus 276 ~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~---g~~~~v~A~k~VILAAGa~~SP~LL 334 (511)
.++.|+++++++.|++|.-++ +++.+|++... +...++.++ .||++.|.--...++
T Consensus 195 l~~~gV~i~~~~~v~~v~~~~--~~~~~v~~~~~~~~~~~~~i~~D-~vv~a~G~~p~~~l~ 253 (321)
T PRK10262 195 VENGNIILHTNRTLEEVTGDQ--MGVTGVRLRDTQNSDNIESLDVA-GLFVAIGHSPNTAIF 253 (321)
T ss_pred ccCCCeEEEeCCEEEEEEcCC--ccEEEEEEEEcCCCCeEEEEECC-EEEEEeCCccChhHh
Confidence 346789999999999996443 45777877642 334578898 699999974444443
No 291
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=96.66 E-value=0.0018 Score=67.46 Aligned_cols=37 Identities=24% Similarity=0.438 Sum_probs=33.5
Q ss_pred cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCC
Q psy760 69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN 106 (511)
Q Consensus 69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~ 106 (511)
.-+++|||||.||+.+|..||+ .|.+|.|+|+.+...
T Consensus 124 ~~svLVIGGGvAGitAAl~La~-~G~~v~LVEKepsiG 160 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELAD-MGFKVYLVEKEPSIG 160 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHH-cCCeEEEEecCCccc
Confidence 3579999999999999999999 899999999987654
No 292
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=96.64 E-value=0.016 Score=62.26 Aligned_cols=33 Identities=15% Similarity=0.220 Sum_probs=29.9
Q ss_pred ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
-.++|||+|..|+-+|..|++ .|.+|.|+|+++
T Consensus 175 ~~vvIIGgG~ig~E~A~~l~~-~G~~Vtlie~~~ 207 (466)
T PRK06115 175 KHLVVIGAGVIGLELGSVWRR-LGAQVTVVEYLD 207 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHH-cCCeEEEEeCCC
Confidence 358999999999999999998 899999999874
No 293
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=96.64 E-value=0.0031 Score=71.86 Aligned_cols=38 Identities=24% Similarity=0.437 Sum_probs=33.8
Q ss_pred CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCC
Q psy760 67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 105 (511)
Q Consensus 67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~ 105 (511)
....||+|||||+||+++|..|++ .|++|+|+|+.+..
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~-~G~~V~v~e~~~~~ 466 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAK-RGYDVTVFEALHEI 466 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHH-CCCeEEEEecCCCC
Confidence 346899999999999999999999 89999999996543
No 294
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=96.64 E-value=0.0022 Score=68.68 Aligned_cols=38 Identities=29% Similarity=0.484 Sum_probs=34.1
Q ss_pred CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCC
Q psy760 67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 105 (511)
Q Consensus 67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~ 105 (511)
....+|+|||||++|+.+|..|++ .|++|+|+|+.+..
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~-~g~~V~lie~~~~~ 175 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLAR-KGYDVTIFEARDKA 175 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHh-CCCeEEEEccCCCC
Confidence 345899999999999999999999 79999999998654
No 295
>KOG4716|consensus
Probab=96.62 E-value=0.0016 Score=64.84 Aligned_cols=35 Identities=29% Similarity=0.527 Sum_probs=32.2
Q ss_pred CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760 67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG 102 (511)
Q Consensus 67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG 102 (511)
..+||.||||||.+|+++|.++|. -|.+|.+||.=
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~-~G~kV~~lDfV 51 (503)
T KOG4716|consen 17 SYDYDLIVIGGGSGGLACAKEAAD-LGAKVACLDFV 51 (503)
T ss_pred cCCccEEEEcCCcchhhHHHHHHh-cCCcEEEEeec
Confidence 457999999999999999999999 89999999964
No 296
>PLN02852 ferredoxin-NADP+ reductase
Probab=96.60 E-value=0.0029 Score=68.00 Aligned_cols=39 Identities=21% Similarity=0.237 Sum_probs=33.9
Q ss_pred CcccEEEECCCcHHHHHHHHHhc-CCCCeEEEEcCCCCCC
Q psy760 68 LEYDFIIVGAGPGGCTVANRLSE-IPHWKILLLEAGHYFN 106 (511)
Q Consensus 68 ~~~DvIVVGgG~aGl~aA~~LAe-~~G~~VLVLEaG~~~~ 106 (511)
....|+|||||+||+.+|..|++ ..|++|+|+|+.+...
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pg 64 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPF 64 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCc
Confidence 45789999999999999999985 2699999999988654
No 297
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=96.60 E-value=0.0023 Score=67.53 Aligned_cols=40 Identities=33% Similarity=0.533 Sum_probs=31.2
Q ss_pred cCCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCC
Q psy760 66 LLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN 106 (511)
Q Consensus 66 ~~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~ 106 (511)
|+++|||||+|.|..-+.+|..||+ .|.+||.+|+++..+
T Consensus 1 m~~~yDviI~GTGl~esila~als~-~GkkVLhiD~n~yYG 40 (438)
T PF00996_consen 1 MDEEYDVIILGTGLTESILAAALSR-SGKKVLHIDRNDYYG 40 (438)
T ss_dssp --SBESEEEE--SHHHHHHHHHHHH-TT--EEEE-SSSSSC
T ss_pred CCccceEEEECCCcHHHHHHHHHHh-cCCEEEecCCCCCcC
Confidence 5679999999999999999999999 899999999998775
No 298
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=96.58 E-value=0.014 Score=62.41 Aligned_cols=33 Identities=30% Similarity=0.447 Sum_probs=30.2
Q ss_pred ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
-.++|||+|..|+-+|..|++ .|.+|.|+|+++
T Consensus 176 ~~v~IiGgG~~g~E~A~~l~~-~g~~Vtli~~~~ 208 (461)
T PRK05249 176 RSLIIYGAGVIGCEYASIFAA-LGVKVTLINTRD 208 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHH-cCCeEEEEecCC
Confidence 359999999999999999999 899999999874
No 299
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=96.56 E-value=0.0019 Score=73.66 Aligned_cols=34 Identities=21% Similarity=0.437 Sum_probs=30.8
Q ss_pred cEEEECCCcHHHHHHHHHhcC-CCCeEEEEcCCCC
Q psy760 71 DFIIVGAGPGGCTVANRLSEI-PHWKILLLEAGHY 104 (511)
Q Consensus 71 DvIVVGgG~aGl~aA~~LAe~-~G~~VLVLEaG~~ 104 (511)
+|+|||||++|+++|+.|++. +|++|+|+|+.+.
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 699999999999999999983 3899999999875
No 300
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=96.52 E-value=0.015 Score=62.21 Aligned_cols=32 Identities=25% Similarity=0.184 Sum_probs=29.9
Q ss_pred cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
.++|||||..|+-+|..|++ .|.+|+|+|+++
T Consensus 168 ~vvIIGgG~iG~E~A~~l~~-~g~~Vtli~~~~ 199 (450)
T TIGR01421 168 RVVIVGAGYIAVELAGVLHG-LGSETHLVIRHE 199 (450)
T ss_pred eEEEECCCHHHHHHHHHHHH-cCCcEEEEecCC
Confidence 69999999999999999998 899999999875
No 301
>KOG0685|consensus
Probab=96.48 E-value=0.0031 Score=65.70 Aligned_cols=40 Identities=33% Similarity=0.424 Sum_probs=34.8
Q ss_pred CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCC
Q psy760 67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN 106 (511)
Q Consensus 67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~ 106 (511)
..+.-|||||||+||+.||.+|-++....|+|+|+.++.+
T Consensus 19 ~~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIG 58 (498)
T KOG0685|consen 19 RGNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIG 58 (498)
T ss_pred cCCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccC
Confidence 4456899999999999999999976677999999988764
No 302
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=96.47 E-value=0.0047 Score=66.35 Aligned_cols=37 Identities=19% Similarity=0.384 Sum_probs=33.7
Q ss_pred CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCC
Q psy760 68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 105 (511)
Q Consensus 68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~ 105 (511)
...+|+|||+|++|+.+|..|++ .|++|+|+|+.+..
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~-~G~~V~i~e~~~~~ 176 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILAR-AGVQVVVFDRHPEI 176 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHH-cCCeEEEEecCCCC
Confidence 46899999999999999999999 79999999998654
No 303
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=96.47 E-value=0.045 Score=54.48 Aligned_cols=55 Identities=25% Similarity=0.215 Sum_probs=40.0
Q ss_pred CCcEEEeCceEEEEEEcCCCCcEEEEEEEE--CCeEEEEEeCcEEEEccCCCCcHHHHHhc
Q psy760 279 CNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNSPKLLMLS 337 (511)
Q Consensus 279 ~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~--~g~~~~v~A~k~VILAAGa~~SP~LL~~S 337 (511)
.|+++++++.|+++..+ +++.++++.. .++..++.++ .||+|+|.-..+.++..+
T Consensus 190 ~gv~~~~~~~v~~i~~~---~~~~~v~~~~~~~g~~~~i~~D-~vi~a~G~~~~~~~l~~~ 246 (300)
T TIGR01292 190 PNIEFLWNSTVKEIVGD---NKVEGVKIKNTVTGEEEELKVD-GVFIAIGHEPNTELLKGL 246 (300)
T ss_pred CCeEEEeccEEEEEEcc---CcEEEEEEEecCCCceEEEEcc-EEEEeeCCCCChHHHHHh
Confidence 48999999999999743 3566777653 3455678997 799999975555566554
No 304
>PRK12831 putative oxidoreductase; Provisional
Probab=96.47 E-value=0.032 Score=59.95 Aligned_cols=32 Identities=13% Similarity=0.090 Sum_probs=29.0
Q ss_pred ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760 70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG 102 (511)
Q Consensus 70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG 102 (511)
=.|+|||||..|+-+|..|++ .|.+|.|+++.
T Consensus 282 k~VvVIGgG~va~d~A~~l~r-~Ga~Vtlv~r~ 313 (464)
T PRK12831 282 KKVAVVGGGNVAMDAARTALR-LGAEVHIVYRR 313 (464)
T ss_pred CeEEEECCcHHHHHHHHHHHH-cCCEEEEEeec
Confidence 379999999999999999998 79999999875
No 305
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=96.45 E-value=0.0069 Score=69.23 Aligned_cols=33 Identities=15% Similarity=0.371 Sum_probs=28.2
Q ss_pred EEEECCCcHHHHHHHHHhcC--CCCeEEEEcCCCC
Q psy760 72 FIIVGAGPGGCTVANRLSEI--PHWKILLLEAGHY 104 (511)
Q Consensus 72 vIVVGgG~aGl~aA~~LAe~--~G~~VLVLEaG~~ 104 (511)
+||||+|+||+.+|.+|.+. .+.+|+|+|+.+.
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~ 35 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPH 35 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCC
Confidence 68999999999999988662 4679999998864
No 306
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=96.45 E-value=0.0074 Score=69.30 Aligned_cols=34 Identities=18% Similarity=0.277 Sum_probs=29.5
Q ss_pred cEEEECCCcHHHHHHHHHhcC---CCCeEEEEcCCCC
Q psy760 71 DFIIVGAGPGGCTVANRLSEI---PHWKILLLEAGHY 104 (511)
Q Consensus 71 DvIVVGgG~aGl~aA~~LAe~---~G~~VLVLEaG~~ 104 (511)
.+||||+|+||+.+|.+|.+. .+.+|+|+++.+.
T Consensus 5 kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~ 41 (847)
T PRK14989 5 RLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPR 41 (847)
T ss_pred cEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCC
Confidence 799999999999999999752 4689999998864
No 307
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=96.45 E-value=0.02 Score=61.58 Aligned_cols=32 Identities=22% Similarity=0.271 Sum_probs=29.6
Q ss_pred cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
.++|||+|..|+-+|..|++ .|.+|+|+|+++
T Consensus 185 ~vvVvGgG~~g~E~A~~l~~-~g~~Vtli~~~~ 216 (475)
T PRK06327 185 KLAVIGAGVIGLELGSVWRR-LGAEVTILEALP 216 (475)
T ss_pred eEEEECCCHHHHHHHHHHHH-cCCeEEEEeCCC
Confidence 68999999999999999998 799999999874
No 308
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=96.43 E-value=0.0037 Score=71.36 Aligned_cols=35 Identities=17% Similarity=0.455 Sum_probs=32.3
Q ss_pred CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
....|+|||||+||+++|+.|++ .|++|+|+|+.+
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~-~Gh~Vtv~E~~~ 416 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLR-SGHNVTAIDGLK 416 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHh-CCCeEEEEcccc
Confidence 45789999999999999999999 899999999864
No 309
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=96.40 E-value=0.027 Score=60.01 Aligned_cols=32 Identities=25% Similarity=0.257 Sum_probs=29.8
Q ss_pred cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
.++|||||..|+-+|..|++ .|.+|.|+|+++
T Consensus 150 ~vvViGgG~ig~E~A~~l~~-~g~~Vtli~~~~ 181 (438)
T PRK13512 150 KALVVGAGYISLEVLENLYE-RGLHPTLIHRSD 181 (438)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCCcEEEEeccc
Confidence 69999999999999999998 899999999874
No 310
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=96.38 E-value=0.025 Score=60.26 Aligned_cols=32 Identities=28% Similarity=0.330 Sum_probs=29.5
Q ss_pred cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
.++|||+|..|+-+|..|++ .|.+|.|+|+++
T Consensus 160 ~v~ViGgG~~g~E~A~~l~~-~g~~Vtli~~~~ 191 (441)
T PRK08010 160 HLGILGGGYIGVEFASMFAN-FGSKVTILEAAS 191 (441)
T ss_pred eEEEECCCHHHHHHHHHHHH-CCCeEEEEecCC
Confidence 68999999999999999998 899999999874
No 311
>PRK14727 putative mercuric reductase; Provisional
Probab=96.37 E-value=0.024 Score=61.06 Aligned_cols=31 Identities=10% Similarity=0.251 Sum_probs=28.2
Q ss_pred cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760 71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAG 102 (511)
Q Consensus 71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG 102 (511)
.++|||+|..|+-+|..|++ .|.+|.|+++.
T Consensus 190 ~vvVIGgG~iG~E~A~~l~~-~G~~Vtlv~~~ 220 (479)
T PRK14727 190 SLTVIGSSVVAAEIAQAYAR-LGSRVTILARS 220 (479)
T ss_pred eEEEECCCHHHHHHHHHHHH-cCCEEEEEEcC
Confidence 59999999999999999998 79999999864
No 312
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=96.35 E-value=0.0057 Score=66.01 Aligned_cols=37 Identities=22% Similarity=0.411 Sum_probs=33.5
Q ss_pred CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCC
Q psy760 68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 105 (511)
Q Consensus 68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~ 105 (511)
...+|+|||+|++|+.+|..|++ .|++|+|+|+.+..
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~-~g~~V~v~e~~~~~ 178 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNR-AGHTVTVFEREDRC 178 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHH-cCCeEEEEecCCCC
Confidence 34799999999999999999999 89999999998754
No 313
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=96.34 E-value=0.031 Score=60.03 Aligned_cols=32 Identities=28% Similarity=0.463 Sum_probs=29.6
Q ss_pred cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
.++|||+|..|+-+|..|++ .|.+|.++|+++
T Consensus 179 ~vvVIGgG~ig~E~A~~l~~-~g~~Vtli~~~~ 210 (466)
T PRK07845 179 HLIVVGSGVTGAEFASAYTE-LGVKVTLVSSRD 210 (466)
T ss_pred eEEEECCCHHHHHHHHHHHH-cCCeEEEEEcCC
Confidence 58999999999999999998 899999999874
No 314
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=96.34 E-value=0.033 Score=59.30 Aligned_cols=33 Identities=27% Similarity=0.389 Sum_probs=30.7
Q ss_pred cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760 71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104 (511)
Q Consensus 71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~ 104 (511)
.++|||||..|+-.|.-+++ -|.+|+|||+++.
T Consensus 175 ~lvIiGgG~IGlE~a~~~~~-LG~~VTiie~~~~ 207 (454)
T COG1249 175 SLVIVGGGYIGLEFASVFAA-LGSKVTVVERGDR 207 (454)
T ss_pred EEEEECCCHHHHHHHHHHHH-cCCcEEEEecCCC
Confidence 48999999999999999999 8999999999864
No 315
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=96.29 E-value=0.004 Score=69.64 Aligned_cols=37 Identities=27% Similarity=0.371 Sum_probs=33.7
Q ss_pred CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCC
Q psy760 68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 105 (511)
Q Consensus 68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~ 105 (511)
...+|+|||+|++|+++|..|++ .|++|+|+|+.+..
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~-~G~~Vtv~e~~~~~ 228 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLR-KGHDVTIFDANEQA 228 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-CCCcEEEEecCCCC
Confidence 45799999999999999999999 89999999998654
No 316
>PLN02507 glutathione reductase
Probab=96.28 E-value=0.034 Score=60.31 Aligned_cols=32 Identities=13% Similarity=0.042 Sum_probs=29.2
Q ss_pred cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
.++|||+|..|+-+|..|++ .|.+|.|+|+++
T Consensus 205 ~vvVIGgG~ig~E~A~~l~~-~G~~Vtli~~~~ 236 (499)
T PLN02507 205 RAVVLGGGYIAVEFASIWRG-MGATVDLFFRKE 236 (499)
T ss_pred eEEEECCcHHHHHHHHHHHH-cCCeEEEEEecC
Confidence 69999999999999999998 799999999874
No 317
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=96.25 E-value=0.0051 Score=63.50 Aligned_cols=37 Identities=22% Similarity=0.289 Sum_probs=33.5
Q ss_pred cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCC
Q psy760 69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN 106 (511)
Q Consensus 69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~ 106 (511)
..+|+|||+|.+|+.+|..|++ .|++|+|+|+.+...
T Consensus 18 ~~~VvIIG~G~aGl~aA~~l~~-~g~~v~lie~~~~~g 54 (352)
T PRK12770 18 GKKVAIIGAGPAGLAAAGYLAC-LGYEVHVYDKLPEPG 54 (352)
T ss_pred CCEEEEECcCHHHHHHHHHHHH-CCCcEEEEeCCCCCC
Confidence 4689999999999999999999 799999999987653
No 318
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=96.23 E-value=0.027 Score=60.15 Aligned_cols=32 Identities=19% Similarity=0.240 Sum_probs=29.2
Q ss_pred cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
.++|||+|..|+-+|..|++ .|.+|.|+|+++
T Consensus 168 ~vvVIGgG~~g~E~A~~l~~-~G~~Vtli~~~~ 199 (446)
T TIGR01424 168 SILILGGGYIAVEFAGIWRG-LGVQVTLIYRGE 199 (446)
T ss_pred eEEEECCcHHHHHHHHHHHH-cCCeEEEEEeCC
Confidence 58999999999999999998 799999999874
No 319
>PRK14694 putative mercuric reductase; Provisional
Probab=96.22 E-value=0.034 Score=59.76 Aligned_cols=31 Identities=13% Similarity=0.268 Sum_probs=28.0
Q ss_pred cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760 71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAG 102 (511)
Q Consensus 71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG 102 (511)
.++|||+|..|+-+|..|++ .|.+|+|++++
T Consensus 180 ~vvViG~G~~G~E~A~~l~~-~g~~Vtlv~~~ 210 (468)
T PRK14694 180 RLLVIGASVVALELAQAFAR-LGSRVTVLARS 210 (468)
T ss_pred eEEEECCCHHHHHHHHHHHH-cCCeEEEEECC
Confidence 58999999999999999998 79999999864
No 320
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.20 E-value=0.0076 Score=67.35 Aligned_cols=37 Identities=19% Similarity=0.319 Sum_probs=34.0
Q ss_pred CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCC
Q psy760 68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 105 (511)
Q Consensus 68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~ 105 (511)
...+|+|||||++|+++|..|++ .|++|+|+|+.+..
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~-~G~~Vtv~e~~~~~ 345 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILAR-AGVQVDVFDRHPEI 345 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHH-cCCcEEEEeCCCCC
Confidence 46889999999999999999999 89999999998764
No 321
>PTZ00188 adrenodoxin reductase; Provisional
Probab=96.18 E-value=0.005 Score=65.62 Aligned_cols=38 Identities=21% Similarity=0.239 Sum_probs=32.7
Q ss_pred cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCC
Q psy760 69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN 106 (511)
Q Consensus 69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~ 106 (511)
..-|+|||||+||+.+|.+|+...|++|.|+|+.+.+.
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pg 76 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPY 76 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCc
Confidence 35699999999999999987643799999999998765
No 322
>PRK07846 mycothione reductase; Reviewed
Probab=96.15 E-value=0.04 Score=58.93 Aligned_cols=33 Identities=18% Similarity=0.240 Sum_probs=30.4
Q ss_pred ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
-.++|||||..|+-+|..|++ .|.+|+|+|+++
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~-~G~~Vtli~~~~ 199 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSA-LGVRVTVVNRSG 199 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHH-cCCeEEEEEcCC
Confidence 469999999999999999998 899999999874
No 323
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=96.15 E-value=0.031 Score=60.31 Aligned_cols=31 Identities=16% Similarity=0.147 Sum_probs=28.1
Q ss_pred cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760 71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAG 102 (511)
Q Consensus 71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG 102 (511)
.++|||||..|+-+|..|++ .|.+|.|+++.
T Consensus 182 ~vvIIGgG~iG~E~A~~l~~-~G~~Vtli~~~ 212 (484)
T TIGR01438 182 KTLVVGASYVALECAGFLAG-IGLDVTVMVRS 212 (484)
T ss_pred CEEEECCCHHHHHHHHHHHH-hCCcEEEEEec
Confidence 58999999999999999998 79999999863
No 324
>PRK06116 glutathione reductase; Validated
Probab=96.15 E-value=0.045 Score=58.48 Aligned_cols=33 Identities=24% Similarity=0.194 Sum_probs=29.8
Q ss_pred ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
-.++|||+|..|+-+|..|++ .|.+|+++++++
T Consensus 168 ~~vvViGgG~~g~E~A~~l~~-~g~~Vtlv~~~~ 200 (450)
T PRK06116 168 KRVAVVGAGYIAVEFAGVLNG-LGSETHLFVRGD 200 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHH-cCCeEEEEecCC
Confidence 368999999999999999998 799999999874
No 325
>PLN03000 amine oxidase
Probab=96.14 E-value=0.0055 Score=69.46 Aligned_cols=38 Identities=29% Similarity=0.376 Sum_probs=34.6
Q ss_pred CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCC
Q psy760 68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN 106 (511)
Q Consensus 68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~ 106 (511)
...||+|||||.+|+.+|..|++ .|++|+|+|+.+...
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~-~G~~V~VlE~~~riG 220 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMR-FGFKVTVLEGRKRPG 220 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHH-CCCcEEEEEccCcCC
Confidence 45899999999999999999999 899999999987654
No 326
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=96.12 E-value=0.039 Score=59.32 Aligned_cols=32 Identities=13% Similarity=0.175 Sum_probs=29.9
Q ss_pred cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
.++|||+|..|+-+|..|++ .|.+|+|||+++
T Consensus 176 ~vvIiGgG~iG~E~A~~l~~-~G~~Vtlv~~~~ 207 (471)
T PRK06467 176 RLLVMGGGIIGLEMGTVYHR-LGSEVDVVEMFD 207 (471)
T ss_pred eEEEECCCHHHHHHHHHHHH-cCCCEEEEecCC
Confidence 69999999999999999999 899999999875
No 327
>KOG1276|consensus
Probab=96.12 E-value=0.0066 Score=62.49 Aligned_cols=41 Identities=27% Similarity=0.346 Sum_probs=34.4
Q ss_pred CCcccEEEECCCcHHHHHHHHHhcC-CCCeEEEEcCCCCCCc
Q psy760 67 LLEYDFIIVGAGPGGCTVANRLSEI-PHWKILLLEAGHYFNY 107 (511)
Q Consensus 67 ~~~~DvIVVGgG~aGl~aA~~LAe~-~G~~VLVLEaG~~~~~ 107 (511)
....+++|||||++|+++|+.|++. +...|+|.|++++...
T Consensus 9 ~~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGG 50 (491)
T KOG1276|consen 9 VSGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGG 50 (491)
T ss_pred eecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccc
Confidence 3467999999999999999999985 5556788999987753
No 328
>PTZ00058 glutathione reductase; Provisional
Probab=96.03 E-value=0.044 Score=60.18 Aligned_cols=33 Identities=15% Similarity=0.157 Sum_probs=29.9
Q ss_pred ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
-.++|||+|..|+-+|..|++ .|.+|.|+|+++
T Consensus 238 k~VvIIGgG~iGlE~A~~l~~-~G~~Vtli~~~~ 270 (561)
T PTZ00058 238 KRIGIAGSGYIAVELINVVNR-LGAESYIFARGN 270 (561)
T ss_pred CEEEEECCcHHHHHHHHHHHH-cCCcEEEEEecc
Confidence 368999999999999999998 899999999874
No 329
>PLN02976 amine oxidase
Probab=95.98 E-value=0.0071 Score=71.25 Aligned_cols=38 Identities=34% Similarity=0.524 Sum_probs=34.0
Q ss_pred CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCC
Q psy760 68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN 106 (511)
Q Consensus 68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~ 106 (511)
..+||+|||+|++|+.+|++|++ .|++|+|||+.+...
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~-~G~~V~VlEa~~~vG 729 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQR-QGFSVTVLEARSRIG 729 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHH-CCCcEEEEeeccCCC
Confidence 45899999999999999999999 899999999976543
No 330
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=95.96 E-value=0.072 Score=55.47 Aligned_cols=34 Identities=35% Similarity=0.501 Sum_probs=31.8
Q ss_pred ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760 70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104 (511)
Q Consensus 70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~ 104 (511)
-+++|||+|.+|+-+|..|++ .|++|+++|+.+.
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~-~G~~v~l~e~~~~ 170 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAK-RGKKVTLIEAADR 170 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHH-cCCeEEEEEcccc
Confidence 689999999999999999999 8999999998854
No 331
>KOG3855|consensus
Probab=95.96 E-value=0.0068 Score=62.13 Aligned_cols=38 Identities=42% Similarity=0.665 Sum_probs=32.9
Q ss_pred CCcccEEEECCCcHHHHHHHHHhcC---CCCeEEEEcCCCC
Q psy760 67 LLEYDFIIVGAGPGGCTVANRLSEI---PHWKILLLEAGHY 104 (511)
Q Consensus 67 ~~~~DvIVVGgG~aGl~aA~~LAe~---~G~~VLVLEaG~~ 104 (511)
...|||||||||+.|.+.|..|..+ ..+||+++|.+..
T Consensus 34 ~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s 74 (481)
T KOG3855|consen 34 TAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDS 74 (481)
T ss_pred cccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccC
Confidence 4479999999999999999999875 3579999999954
No 332
>PRK13748 putative mercuric reductase; Provisional
Probab=95.92 E-value=0.047 Score=60.05 Aligned_cols=31 Identities=13% Similarity=0.232 Sum_probs=28.8
Q ss_pred cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760 71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAG 102 (511)
Q Consensus 71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG 102 (511)
.++|||+|..|+-+|..|++ .|.+|.|+|+.
T Consensus 272 ~vvViGgG~ig~E~A~~l~~-~g~~Vtli~~~ 302 (561)
T PRK13748 272 RLAVIGSSVVALELAQAFAR-LGSKVTILARS 302 (561)
T ss_pred eEEEECCCHHHHHHHHHHHH-cCCEEEEEecC
Confidence 69999999999999999998 89999999974
No 333
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.77 E-value=0.049 Score=57.30 Aligned_cols=36 Identities=28% Similarity=0.435 Sum_probs=29.8
Q ss_pred ccEEEECCCcHHHHHHHHHhcC--CCCeEEEEcCCCCC
Q psy760 70 YDFIIVGAGPGGCTVANRLSEI--PHWKILLLEAGHYF 105 (511)
Q Consensus 70 ~DvIVVGgG~aGl~aA~~LAe~--~G~~VLVLEaG~~~ 105 (511)
++|+|||||++|..+|.+|.+. +..+|.|+|+-+..
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~ 39 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNF 39 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEecccccc
Confidence 7899999999999999999875 22349999987654
No 334
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=95.71 E-value=0.067 Score=57.75 Aligned_cols=49 Identities=10% Similarity=0.123 Sum_probs=34.1
Q ss_pred hhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCc
Q psy760 276 KKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNS 330 (511)
Q Consensus 276 ~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~S 330 (511)
.++.|+++++++.|++|..+++ ....|++. +++ ++.++ .||+|+|-.-.
T Consensus 241 L~~~GI~i~~~~~v~~i~~~~~--~~~~v~~~-~g~--~i~~D-~vl~a~G~~Pn 289 (486)
T TIGR01423 241 LRANGINIMTNENPAKVTLNAD--GSKHVTFE-SGK--TLDVD-VVMMAIGRVPR 289 (486)
T ss_pred HHHcCCEEEcCCEEEEEEEcCC--ceEEEEEc-CCC--EEEcC-EEEEeeCCCcC
Confidence 4567999999999999976542 22334443 333 68898 69999997433
No 335
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=95.71 E-value=0.1 Score=55.89 Aligned_cols=32 Identities=9% Similarity=0.159 Sum_probs=28.4
Q ss_pred ccEEEECCCcHHHHHHHHHhcCCCC-eEEEEcCC
Q psy760 70 YDFIIVGAGPGGCTVANRLSEIPHW-KILLLEAG 102 (511)
Q Consensus 70 ~DvIVVGgG~aGl~aA~~LAe~~G~-~VLVLEaG 102 (511)
-.|+|||+|..|+-+|..|++ .|. +|.|+++.
T Consensus 274 ~~VvViGgG~~g~e~A~~l~~-~G~~~Vtlv~~~ 306 (457)
T PRK11749 274 KRVVVIGGGNTAMDAARTAKR-LGAESVTIVYRR 306 (457)
T ss_pred CeEEEECCCHHHHHHHHHHHH-cCCCeEEEeeec
Confidence 479999999999999999998 677 89999875
No 336
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=95.71 E-value=0.085 Score=54.39 Aligned_cols=31 Identities=19% Similarity=0.145 Sum_probs=27.7
Q ss_pred cEEEECCCcHHHHHHHHHhcCCCCe-EEEEcCC
Q psy760 71 DFIIVGAGPGGCTVANRLSEIPHWK-ILLLEAG 102 (511)
Q Consensus 71 DvIVVGgG~aGl~aA~~LAe~~G~~-VLVLEaG 102 (511)
.++|||+|..|+-+|..|++ .|.+ |.|+|+.
T Consensus 174 ~vvViG~G~~g~e~A~~l~~-~g~~~Vtvi~~~ 205 (352)
T PRK12770 174 KVVVVGAGLTAVDAALEAVL-LGAEKVYLAYRR 205 (352)
T ss_pred EEEEECCCHHHHHHHHHHHH-cCCCeEEEEeec
Confidence 59999999999999999988 6886 9999865
No 337
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=95.57 E-value=0.1 Score=55.88 Aligned_cols=33 Identities=18% Similarity=0.259 Sum_probs=30.1
Q ss_pred ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
-.++|||+|..|+-+|..|++ .|.+|+|+|+++
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~-~G~~Vtli~~~~ 202 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSA-LGTRVTIVNRST 202 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHh-CCCcEEEEEccC
Confidence 369999999999999999998 899999999874
No 338
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=95.55 E-value=0.012 Score=64.68 Aligned_cols=38 Identities=24% Similarity=0.390 Sum_probs=33.7
Q ss_pred CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCC
Q psy760 67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 105 (511)
Q Consensus 67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~ 105 (511)
...-+|+|||+|++|+++|..|++ .|++|+|+|+.+..
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~-~G~~V~v~e~~~~~ 172 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRR-MGHAVTIFEAGPKL 172 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH-CCCeEEEEecCCCC
Confidence 345789999999999999999999 79999999987654
No 339
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=95.50 E-value=0.13 Score=57.39 Aligned_cols=32 Identities=19% Similarity=0.132 Sum_probs=29.7
Q ss_pred cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
.++|||||..|+-.|..|++ .|.+|+|+|+++
T Consensus 314 ~VvIVGgG~iGvE~A~~l~~-~G~eVTLIe~~~ 345 (659)
T PTZ00153 314 YMGIVGMGIIGLEFMDIYTA-LGSEVVSFEYSP 345 (659)
T ss_pred ceEEECCCHHHHHHHHHHHh-CCCeEEEEeccC
Confidence 68999999999999999998 799999999875
No 340
>PRK13984 putative oxidoreductase; Provisional
Probab=95.42 E-value=0.016 Score=64.28 Aligned_cols=38 Identities=24% Similarity=0.291 Sum_probs=34.2
Q ss_pred CCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCC
Q psy760 67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 105 (511)
Q Consensus 67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~ 105 (511)
....+++|||+|++|+.+|..|++ .|++|+|+|+.+..
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~-~G~~v~vie~~~~~ 318 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLAT-MGYEVTVYESLSKP 318 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHH-CCCeEEEEecCCCC
Confidence 356789999999999999999999 89999999998754
No 341
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=95.42 E-value=0.15 Score=54.56 Aligned_cols=32 Identities=25% Similarity=0.436 Sum_probs=29.8
Q ss_pred cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
.++|||+|..|+-+|..|++ .|.+|.|+|+++
T Consensus 171 ~v~VIGgG~~g~E~A~~l~~-~g~~Vtli~~~~ 202 (460)
T PRK06292 171 SLAVIGGGVIGLELGQALSR-LGVKVTVFERGD 202 (460)
T ss_pred eEEEECCCHHHHHHHHHHHH-cCCcEEEEecCC
Confidence 69999999999999999998 799999999874
No 342
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=95.37 E-value=0.19 Score=55.28 Aligned_cols=33 Identities=18% Similarity=0.225 Sum_probs=29.9
Q ss_pred ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
-.++|||||..|+-+|..|++ .|.+|+++++++
T Consensus 144 ~~VvVIGgG~~g~E~A~~L~~-~g~~Vtli~~~~ 176 (555)
T TIGR03143 144 MDVFVIGGGFAAAEEAVFLTR-YASKVTVIVREP 176 (555)
T ss_pred CEEEEECCCHHHHHHHHHHHc-cCCEEEEEEeCC
Confidence 369999999999999999998 799999999874
No 343
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=95.33 E-value=0.15 Score=54.78 Aligned_cols=60 Identities=20% Similarity=0.176 Sum_probs=42.2
Q ss_pred hCCCcEEEeCceEEEEEEcCCCCcEEEEEEEE-----------CCeEEEEEeCcEEEEccCCCCc-HHHHHhcCC
Q psy760 277 KRCNLTVKDSSFVKKILIDPVTKKACGVLATI-----------KGIDHKILARKEVILSAGAFNS-PKLLMLSGI 339 (511)
Q Consensus 277 ~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~-----------~g~~~~v~A~k~VILAAGa~~S-P~LL~~SGI 339 (511)
++.|+++++++.+++|.-++ +++++|++.+ .++..++.++ .||+|.|..-. ..++...|+
T Consensus 340 ~~~GV~i~~~~~~~~i~~~~--g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D-~VI~A~G~~p~~~~l~~~~gl 411 (471)
T PRK12810 340 HEEGVEREFNVQTKEFEGEN--GKVTGVKVVRTELGEGDFEPVEGSEFVLPAD-LVLLAMGFTGPEAGLLAQFGV 411 (471)
T ss_pred HHcCCeEEeccCceEEEccC--CEEEEEEEEEEEecCCCccccCCceEEEECC-EEEECcCcCCCchhhccccCc
Confidence 45699999999999996443 7888887652 2345689998 69999995332 335544443
No 344
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=95.27 E-value=0.14 Score=54.30 Aligned_cols=52 Identities=21% Similarity=0.231 Sum_probs=35.3
Q ss_pred hhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHHhcCC
Q psy760 276 KKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGI 339 (511)
Q Consensus 276 ~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~~SGI 339 (511)
.++.|+++++++.|+++.-+ .|++. +|+ ++.++ .||+++|.-.+ .++..+|+
T Consensus 238 L~~~gV~v~~~~~v~~v~~~-------~v~~~-~g~--~i~~d-~vi~~~G~~~~-~~~~~~~l 289 (424)
T PTZ00318 238 LRRLGVDIRTKTAVKEVLDK-------EVVLK-DGE--VIPTG-LVVWSTGVGPG-PLTKQLKV 289 (424)
T ss_pred HHHCCCEEEeCCeEEEEeCC-------EEEEC-CCC--EEEcc-EEEEccCCCCc-chhhhcCC
Confidence 45679999999999998522 35544 344 68887 68888885333 45555553
No 345
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=95.23 E-value=0.17 Score=54.48 Aligned_cols=33 Identities=6% Similarity=0.031 Sum_probs=28.4
Q ss_pred ccEEEECCCcHHHHHHHHHhcCCCC-eEEEEcCCC
Q psy760 70 YDFIIVGAGPGGCTVANRLSEIPHW-KILLLEAGH 103 (511)
Q Consensus 70 ~DvIVVGgG~aGl~aA~~LAe~~G~-~VLVLEaG~ 103 (511)
-.++|||||..|+-+|..+.+ .|. +|.|+++.+
T Consensus 283 k~VvVIGgG~~a~d~A~~a~~-~Ga~~Vtvv~r~~ 316 (467)
T TIGR01318 283 KRVVVLGGGDTAMDCVRTAIR-LGAASVTCAYRRD 316 (467)
T ss_pred CEEEEECCcHHHHHHHHHHHH-cCCCeEEEEEecC
Confidence 469999999999999999888 675 799998763
No 346
>PTZ00052 thioredoxin reductase; Provisional
Probab=95.20 E-value=0.13 Score=55.77 Aligned_cols=31 Identities=26% Similarity=0.261 Sum_probs=28.5
Q ss_pred cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760 71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAG 102 (511)
Q Consensus 71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG 102 (511)
.++|||+|..|+-+|..|++ .|.+|.|+++.
T Consensus 184 ~vvIIGgG~iG~E~A~~l~~-~G~~Vtli~~~ 214 (499)
T PTZ00052 184 KTLIVGASYIGLETAGFLNE-LGFDVTVAVRS 214 (499)
T ss_pred eEEEECCCHHHHHHHHHHHH-cCCcEEEEEcC
Confidence 69999999999999999999 79999999863
No 347
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=95.17 E-value=0.23 Score=58.42 Aligned_cols=60 Identities=18% Similarity=0.180 Sum_probs=45.1
Q ss_pred hCCCcEEEeCceEEEEEEcCCCCcEEEEEEEE-CCeEEEEEeCcEEEEccCCCCcHHHHHhcCCC
Q psy760 277 KRCNLTVKDSSFVKKILIDPVTKKACGVLATI-KGIDHKILARKEVILSAGAFNSPKLLMLSGIG 340 (511)
Q Consensus 277 ~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~-~g~~~~v~A~k~VILAAGa~~SP~LL~~SGIG 340 (511)
++.|+++++++.|+++.-+ +++.+|++.. +++..++.++ .|+++.|..-+..|+...|..
T Consensus 362 ~~~GV~i~~~~~v~~i~g~---~~v~~V~l~~~~g~~~~i~~D-~V~va~G~~Pnt~L~~~lg~~ 422 (985)
T TIGR01372 362 RELGIEVLTGHVVAATEGG---KRVSGVAVARNGGAGQRLEAD-ALAVSGGWTPVVHLFSQRGGK 422 (985)
T ss_pred HHcCCEEEcCCeEEEEecC---CcEEEEEEEecCCceEEEECC-EEEEcCCcCchhHHHHhcCCC
Confidence 4678999999999998633 4677888763 3344578998 699999987666787776643
No 348
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=95.16 E-value=0.026 Score=59.78 Aligned_cols=37 Identities=14% Similarity=0.343 Sum_probs=32.4
Q ss_pred CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCC
Q psy760 68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 105 (511)
Q Consensus 68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~ 105 (511)
+..+|||||||.||+.+|.+|.. .+.+|+|||+.+..
T Consensus 9 ~~~~vVIvGgG~aGl~~a~~L~~-~~~~ItlI~~~~~~ 45 (424)
T PTZ00318 9 KKPNVVVLGTGWAGAYFVRNLDP-KKYNITVISPRNHM 45 (424)
T ss_pred CCCeEEEECCCHHHHHHHHHhCc-CCCeEEEEcCCCCc
Confidence 45789999999999999999976 68899999987654
No 349
>PLN02546 glutathione reductase
Probab=95.15 E-value=0.18 Score=55.45 Aligned_cols=32 Identities=16% Similarity=0.132 Sum_probs=29.4
Q ss_pred cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
.++|||||..|+-+|..|++ .|.+|.|+|+++
T Consensus 254 ~V~VIGgG~iGvE~A~~L~~-~g~~Vtlv~~~~ 285 (558)
T PLN02546 254 KIAIVGGGYIALEFAGIFNG-LKSDVHVFIRQK 285 (558)
T ss_pred eEEEECCCHHHHHHHHHHHh-cCCeEEEEEecc
Confidence 69999999999999999998 799999999874
No 350
>KOG1800|consensus
Probab=95.09 E-value=0.027 Score=57.24 Aligned_cols=39 Identities=26% Similarity=0.250 Sum_probs=33.9
Q ss_pred cccEEEECCCcHHHHHHHHHhcC-CCCeEEEEcCCCCCCc
Q psy760 69 EYDFIIVGAGPGGCTVANRLSEI-PHWKILLLEAGHYFNY 107 (511)
Q Consensus 69 ~~DvIVVGgG~aGl~aA~~LAe~-~G~~VLVLEaG~~~~~ 107 (511)
..-|+|||||+||+.+|.+|-++ ++.+|.|+|+-+.+..
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFG 59 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFG 59 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccc
Confidence 34799999999999999999884 7899999999987643
No 351
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=94.93 E-value=0.28 Score=57.19 Aligned_cols=32 Identities=9% Similarity=0.172 Sum_probs=28.5
Q ss_pred ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760 70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG 102 (511)
Q Consensus 70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG 102 (511)
=.|+|||||..|+-+|..+.+ .|.+|+++.+.
T Consensus 448 k~VvVIGGG~tA~D~A~ta~R-~Ga~Vtlv~rr 479 (944)
T PRK12779 448 KEVFVIGGGNTAMDAARTAKR-LGGNVTIVYRR 479 (944)
T ss_pred CEEEEECCCHHHHHHHHHHHH-cCCEEEEEEec
Confidence 369999999999999999998 78899998765
No 352
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=94.87 E-value=0.2 Score=57.25 Aligned_cols=32 Identities=13% Similarity=0.130 Sum_probs=28.3
Q ss_pred ccEEEECCCcHHHHHHHHHhcCCCCe-EEEEcCC
Q psy760 70 YDFIIVGAGPGGCTVANRLSEIPHWK-ILLLEAG 102 (511)
Q Consensus 70 ~DvIVVGgG~aGl~aA~~LAe~~G~~-VLVLEaG 102 (511)
-.|||||||..|+-+|..|.+ .|.+ |+|+++.
T Consensus 571 k~VvVIGgG~~a~d~A~~~~r-~Ga~~Vtlv~r~ 603 (752)
T PRK12778 571 KKVAVVGGGNTAMDSARTAKR-LGAERVTIVYRR 603 (752)
T ss_pred CcEEEECCcHHHHHHHHHHHH-cCCCeEEEeeec
Confidence 369999999999999999988 6876 9999875
No 353
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=94.78 E-value=0.042 Score=58.56 Aligned_cols=37 Identities=24% Similarity=0.384 Sum_probs=33.8
Q ss_pred cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCC
Q psy760 69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN 106 (511)
Q Consensus 69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~ 106 (511)
.-.|.|||||+||+.+|..|++ .|+.|+|.|+-+...
T Consensus 123 g~~VaviGaGPAGl~~a~~L~~-~G~~Vtv~e~~~~~G 159 (457)
T COG0493 123 GKKVAVIGAGPAGLAAADDLSR-AGHDVTVFERVALDG 159 (457)
T ss_pred CCEEEEECCCchHhhhHHHHHh-CCCeEEEeCCcCCCc
Confidence 3789999999999999999999 899999999987654
No 354
>KOG1336|consensus
Probab=94.37 E-value=0.25 Score=51.93 Aligned_cols=56 Identities=11% Similarity=-0.002 Sum_probs=43.1
Q ss_pred hhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHHh
Q psy760 276 KKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLML 336 (511)
Q Consensus 276 ~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~~ 336 (511)
.++.|++++.++.+.++..+.+ |+++-|.+.++. ++.|+ -||+..|+--...++..
T Consensus 265 ~e~kgVk~~~~t~~s~l~~~~~-Gev~~V~l~dg~---~l~ad-lvv~GiG~~p~t~~~~~ 320 (478)
T KOG1336|consen 265 YENKGVKFYLGTVVSSLEGNSD-GEVSEVKLKDGK---TLEAD-LVVVGIGIKPNTSFLEK 320 (478)
T ss_pred HHhcCeEEEEecceeecccCCC-CcEEEEEeccCC---EeccC-eEEEeeccccccccccc
Confidence 3578999999999999987765 788888876543 68898 69999998433345544
No 355
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=94.28 E-value=0.21 Score=51.36 Aligned_cols=38 Identities=18% Similarity=0.212 Sum_probs=28.6
Q ss_pred CCcccEEEECCCcHHHHHHHHHhcC-CCCeEEEEcCCCC
Q psy760 67 LLEYDFIIVGAGPGGCTVANRLSEI-PHWKILLLEAGHY 104 (511)
Q Consensus 67 ~~~~DvIVVGgG~aGl~aA~~LAe~-~G~~VLVLEaG~~ 104 (511)
.....|+|||||-.+.-++..|.++ +..+|.++=|++.
T Consensus 188 ~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~ 226 (341)
T PF13434_consen 188 LAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPG 226 (341)
T ss_dssp ---EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS
T ss_pred cCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCc
Confidence 4567899999999999999999984 3358988888753
No 356
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.26 E-value=0.34 Score=50.01 Aligned_cols=39 Identities=31% Similarity=0.313 Sum_probs=34.1
Q ss_pred cCCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760 66 LLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104 (511)
Q Consensus 66 ~~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~ 104 (511)
+.+.+|+|.||-|++-+..|+.|.+..+.+++.|||-+.
T Consensus 2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~ 40 (436)
T COG3486 2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPD 40 (436)
T ss_pred CCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCC
Confidence 345699999999999999999999966689999999764
No 357
>KOG4405|consensus
Probab=94.12 E-value=0.055 Score=55.46 Aligned_cols=41 Identities=24% Similarity=0.438 Sum_probs=37.2
Q ss_pred ccCCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCC
Q psy760 65 DLLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN 106 (511)
Q Consensus 65 ~~~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~ 106 (511)
..+.+||+||||.|..-.++|...++ .|.+||=||+.+..+
T Consensus 4 ~lP~~fDvVViGTGlpESilAAAcSr-sG~sVLHlDsn~yYG 44 (547)
T KOG4405|consen 4 ILPEEFDVVVIGTGLPESILAAACSR-SGSSVLHLDSNEYYG 44 (547)
T ss_pred CCchhccEEEEcCCCcHHHHHHHhhh-cCCceEeccCccccC
Confidence 45778999999999999999999999 899999999987654
No 358
>KOG2755|consensus
Probab=93.94 E-value=0.038 Score=53.55 Aligned_cols=35 Identities=37% Similarity=0.758 Sum_probs=30.6
Q ss_pred cEEEECCCcHHHHHHHHHhcC-CCCeEEEEcCCCCC
Q psy760 71 DFIIVGAGPGGCTVANRLSEI-PHWKILLLEAGHYF 105 (511)
Q Consensus 71 DvIVVGgG~aGl~aA~~LAe~-~G~~VLVLEaG~~~ 105 (511)
.+||||||+||.++|..||.. +...||+|-+.+..
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~v 36 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFV 36 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHH
Confidence 379999999999999999964 88899999987653
No 359
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=93.72 E-value=0.048 Score=54.49 Aligned_cols=33 Identities=21% Similarity=0.342 Sum_probs=30.0
Q ss_pred cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760 71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104 (511)
Q Consensus 71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~ 104 (511)
-|.|||+|.||.-+|+++|+ .|.+|.+.|--+.
T Consensus 5 ~i~VIGaGLAGSEAAwqiA~-~Gv~V~L~EMRp~ 37 (439)
T COG1206 5 PINVIGAGLAGSEAAWQIAK-RGVPVILYEMRPV 37 (439)
T ss_pred ceEEEcccccccHHHHHHHH-cCCcEEEEEcccc
Confidence 48899999999999999999 8999999996543
No 360
>KOG3851|consensus
Probab=93.39 E-value=0.07 Score=53.13 Aligned_cols=39 Identities=18% Similarity=0.338 Sum_probs=33.0
Q ss_pred cCCcccEEEECCCcHHHHHHHHHhcC-CCCeEEEEcCCCC
Q psy760 66 LLLEYDFIIVGAGPGGCTVANRLSEI-PHWKILLLEAGHY 104 (511)
Q Consensus 66 ~~~~~DvIVVGgG~aGl~aA~~LAe~-~G~~VLVLEaG~~ 104 (511)
..+++.++|||||.+|+.+|.++++. +.-+|.|||-...
T Consensus 36 ~~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~ 75 (446)
T KOG3851|consen 36 ARKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAED 75 (446)
T ss_pred cccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhh
Confidence 45789999999999999999999986 4458999996543
No 361
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=93.36 E-value=0.088 Score=47.02 Aligned_cols=31 Identities=29% Similarity=0.488 Sum_probs=29.4
Q ss_pred EEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 72 FIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 72 vIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
++|+|+|..|+..|++|++ .|.+|.++-+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~-~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQ-AGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHH-TTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHH-CCCceEEEEccc
Confidence 6899999999999999999 899999999986
No 362
>KOG1439|consensus
Probab=93.33 E-value=0.055 Score=55.46 Aligned_cols=40 Identities=30% Similarity=0.587 Sum_probs=36.2
Q ss_pred cCCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCC
Q psy760 66 LLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN 106 (511)
Q Consensus 66 ~~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~ 106 (511)
|.++|||||+|.|..=|..+..|+. .|.+||.+||.+..+
T Consensus 1 mdeeyDvivlGTgl~ecilS~~Ls~-~gkkVLhiDrN~yYG 40 (440)
T KOG1439|consen 1 MDEEYDVIVLGTGLTECILSGALSV-DGKKVLHIDRNDYYG 40 (440)
T ss_pred CCCceeEEEEcCCchhheeeeeeee-cCcEEEEEeCCCCCC
Confidence 3556999999999999999999999 799999999998764
No 363
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=93.12 E-value=0.64 Score=52.20 Aligned_cols=33 Identities=12% Similarity=0.158 Sum_probs=27.9
Q ss_pred ccEEEECCCcHHHHHHHHHhcCCCC-eEEEEcCCC
Q psy760 70 YDFIIVGAGPGGCTVANRLSEIPHW-KILLLEAGH 103 (511)
Q Consensus 70 ~DvIVVGgG~aGl~aA~~LAe~~G~-~VLVLEaG~ 103 (511)
-.|+|||+|..|+-+|..|.+ .|. +|.|+++..
T Consensus 324 k~VvVIGgG~~a~e~A~~l~~-~Ga~~Vtlv~r~~ 357 (652)
T PRK12814 324 KKVVVIGGGNTAIDAARTALR-LGAESVTILYRRT 357 (652)
T ss_pred CeEEEECCCHHHHHHHHHHHH-cCCCeEEEeeecC
Confidence 469999999999999999888 565 699998763
No 364
>KOG0399|consensus
Probab=92.74 E-value=0.14 Score=58.59 Aligned_cols=38 Identities=21% Similarity=0.410 Sum_probs=34.7
Q ss_pred CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCC
Q psy760 68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN 106 (511)
Q Consensus 68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~ 106 (511)
.-.-|.|||+|++|+.+|..|-+ .|+.|+|.||.+...
T Consensus 1784 tg~~vaiigsgpaglaaadqlnk-~gh~v~vyer~dr~g 1821 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNK-AGHTVTVYERSDRVG 1821 (2142)
T ss_pred cCcEEEEEccCchhhhHHHHHhh-cCcEEEEEEecCCcC
Confidence 45789999999999999999999 899999999988765
No 365
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=92.64 E-value=0.96 Score=50.67 Aligned_cols=49 Identities=14% Similarity=0.091 Sum_probs=35.9
Q ss_pred hCCCcEEEeCceEEEEEEcCCCCcEEEEEEEE-----------------CCeEEEEEeCcEEEEccCC
Q psy760 277 KRCNLTVKDSSFVKKILIDPVTKKACGVLATI-----------------KGIDHKILARKEVILSAGA 327 (511)
Q Consensus 277 ~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~-----------------~g~~~~v~A~k~VILAAGa 327 (511)
+..|+++++++.+++|..+++ +++++|++.. .+.+.++.++ .||+|.|-
T Consensus 500 ~~eGv~~~~~~~~~~i~~~~~-g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD-~Vi~AiG~ 565 (639)
T PRK12809 500 REEGVEFQFNVQPQYIACDED-GRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPAD-VLIMAFGF 565 (639)
T ss_pred HHcCCeEEeccCCEEEEECCC-CeEEEEEEEEEEecCcCCCCCccceecCCceEEEECC-EEEECcCC
Confidence 345889999999999876543 6788876531 1345688998 69999995
No 366
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=92.24 E-value=0.19 Score=51.04 Aligned_cols=37 Identities=27% Similarity=0.472 Sum_probs=34.6
Q ss_pred cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCCC
Q psy760 69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN 106 (511)
Q Consensus 69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~~ 106 (511)
.|||||+|.|..=|+.+.+|+- .|.+|+.||+.+..+
T Consensus 6 ~yDvii~GTgl~esils~~Ls~-~~k~VlhiD~Nd~YG 42 (434)
T COG5044 6 LYDVIILGTGLRESILSAALSW-DGKNVLHIDKNDYYG 42 (434)
T ss_pred cccEEEecccHHHHHHHHHhhh-cCceEEEEeCCCccC
Confidence 6999999999999999999999 799999999988764
No 367
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=91.98 E-value=0.18 Score=45.62 Aligned_cols=31 Identities=23% Similarity=0.384 Sum_probs=29.0
Q ss_pred EEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 72 FIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 72 vIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
|.|+|||..|.++|..|++ .|++|.|..+.+
T Consensus 2 I~ViGaG~~G~AlA~~la~-~g~~V~l~~~~~ 32 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLAD-NGHEVTLWGRDE 32 (157)
T ss_dssp EEEESSSHHHHHHHHHHHH-CTEEEEEETSCH
T ss_pred EEEECcCHHHHHHHHHHHH-cCCEEEEEeccH
Confidence 7899999999999999999 799999999864
No 368
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=91.26 E-value=0.22 Score=48.08 Aligned_cols=33 Identities=36% Similarity=0.565 Sum_probs=30.7
Q ss_pred cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760 71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104 (511)
Q Consensus 71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~ 104 (511)
.++|||+|-.|..+|..|++ .|+.|+++|+.+.
T Consensus 2 ~iiIiG~G~vG~~va~~L~~-~g~~Vv~Id~d~~ 34 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSE-EGHNVVLIDRDEE 34 (225)
T ss_pred EEEEECCcHHHHHHHHHHHh-CCCceEEEEcCHH
Confidence 58999999999999999999 8999999999764
No 369
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=91.21 E-value=0.23 Score=46.15 Aligned_cols=32 Identities=19% Similarity=0.378 Sum_probs=27.6
Q ss_pred EEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760 72 FIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104 (511)
Q Consensus 72 vIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~ 104 (511)
|.|||+|..|...|..++. .|++|.++|..+.
T Consensus 2 V~ViGaG~mG~~iA~~~a~-~G~~V~l~d~~~~ 33 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFAR-AGYEVTLYDRSPE 33 (180)
T ss_dssp EEEES-SHHHHHHHHHHHH-TTSEEEEE-SSHH
T ss_pred EEEEcCCHHHHHHHHHHHh-CCCcEEEEECChH
Confidence 7899999999999999999 7999999998754
No 370
>KOG2403|consensus
Probab=90.74 E-value=0.59 Score=50.00 Aligned_cols=37 Identities=30% Similarity=0.357 Sum_probs=32.5
Q ss_pred ccCCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760 65 DLLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG 102 (511)
Q Consensus 65 ~~~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG 102 (511)
..+..||.+|||+|.||+-+|..|+| .|.+|.++-+-
T Consensus 51 ~~~~~~da~vvgaggAGlr~~~~lae-~g~~~a~itkl 87 (642)
T KOG2403|consen 51 QVDHTYDAVVVGAGGAGLRAARGLAE-LGEKTAVITKL 87 (642)
T ss_pred eeeeeceeEEEeccchhhhhhhhhhh-cCceEEEEecc
Confidence 34556999999999999999999999 89999988764
No 371
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=90.63 E-value=2.9 Score=42.49 Aligned_cols=58 Identities=17% Similarity=0.183 Sum_probs=45.3
Q ss_pred hCCCcEEEeCceEEEEEEcCCCCcEEEEEEEE--CCeEEEEEeCcEEEEccCCCCcHHHHHhc
Q psy760 277 KRCNLTVKDSSFVKKILIDPVTKKACGVLATI--KGIDHKILARKEVILSAGAFNSPKLLMLS 337 (511)
Q Consensus 277 ~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~--~g~~~~v~A~k~VILAAGa~~SP~LL~~S 337 (511)
.-+|++|++|+.-++|.=|+ .+|+|.++.+ .++...+.-. .|.+--|-+-+..+|.-+
T Consensus 401 sl~Nv~ii~na~Ttei~Gdg--~kV~Gl~Y~dr~sge~~~l~Le-GvFVqIGL~PNT~WLkg~ 460 (520)
T COG3634 401 SLPNVTIITNAQTTEVKGDG--DKVTGLEYRDRVSGEEHHLELE-GVFVQIGLLPNTEWLKGA 460 (520)
T ss_pred cCCCcEEEecceeeEEecCC--ceecceEEEeccCCceeEEEee-eeEEEEecccChhHhhch
Confidence 34799999999999997665 6899999984 4555666665 689999988777777654
No 372
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=90.13 E-value=0.3 Score=49.41 Aligned_cols=32 Identities=28% Similarity=0.366 Sum_probs=30.0
Q ss_pred cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
.|.|||+|+.|+..|.+|++ .|.+|.++.|+.
T Consensus 4 ~I~IiGaGaiG~~~a~~L~~-~G~~V~lv~r~~ 35 (305)
T PRK05708 4 TWHILGAGSLGSLWACRLAR-AGLPVRLILRDR 35 (305)
T ss_pred eEEEECCCHHHHHHHHHHHh-CCCCeEEEEech
Confidence 59999999999999999999 899999999974
No 373
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=90.09 E-value=4.1 Score=47.73 Aligned_cols=33 Identities=18% Similarity=0.302 Sum_probs=27.5
Q ss_pred cEEEECCCcHHHHHHHHHhcCCC-CeEEEEcCCC
Q psy760 71 DFIIVGAGPGGCTVANRLSEIPH-WKILLLEAGH 103 (511)
Q Consensus 71 DvIVVGgG~aGl~aA~~LAe~~G-~~VLVLEaG~ 103 (511)
.|+|||||..|+-+|..+.+..| .+|.|+.+..
T Consensus 670 rVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~ 703 (1019)
T PRK09853 670 HVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 703 (1019)
T ss_pred EEEEECCChHHHHHHHHHHhcCCCceEEEEEccC
Confidence 69999999999999988877345 4899998763
No 374
>PRK13984 putative oxidoreductase; Provisional
Probab=90.02 E-value=3.8 Score=45.53 Aligned_cols=54 Identities=15% Similarity=0.038 Sum_probs=35.5
Q ss_pred CCcEEEeCceEEEEEEcCCCCcEEEEEEEE----------------CCeEEEEEeCcEEEEccCCCCcHHHHH
Q psy760 279 CNLTVKDSSFVKKILIDPVTKKACGVLATI----------------KGIDHKILARKEVILSAGAFNSPKLLM 335 (511)
Q Consensus 279 ~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~----------------~g~~~~v~A~k~VILAAGa~~SP~LL~ 335 (511)
.|+++++++.++++..++ +++++|++.. .+...++.++ .||+|.|--....+|.
T Consensus 475 ~GV~i~~~~~~~~i~~~~--g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD-~Vi~aiG~~p~~~~l~ 544 (604)
T PRK13984 475 EGVVIYPGWGPMEVVIEN--DKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEAD-MVVEAIGQAPDYSYLP 544 (604)
T ss_pred cCCEEEeCCCCEEEEccC--CEEEEEEEEEEeeccCCCCCccceecCCceEEEECC-EEEEeeCCCCChhhhh
Confidence 578888888777775443 5677776531 1234579998 6999999744334443
No 375
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=89.82 E-value=0.36 Score=45.08 Aligned_cols=32 Identities=19% Similarity=0.323 Sum_probs=26.0
Q ss_pred EEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760 72 FIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104 (511)
Q Consensus 72 vIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~ 104 (511)
|.|||.|..|+++|..||+ .|++|+.+|..+.
T Consensus 3 I~ViGlGyvGl~~A~~lA~-~G~~V~g~D~~~~ 34 (185)
T PF03721_consen 3 IAVIGLGYVGLPLAAALAE-KGHQVIGVDIDEE 34 (185)
T ss_dssp EEEE--STTHHHHHHHHHH-TTSEEEEE-S-HH
T ss_pred EEEECCCcchHHHHHHHHh-CCCEEEEEeCChH
Confidence 7899999999999999999 8999999998753
No 376
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=89.49 E-value=0.45 Score=44.37 Aligned_cols=34 Identities=18% Similarity=0.312 Sum_probs=28.3
Q ss_pred cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
.-.|+|||+|.++.-+|..|++ .|.+|.++=|.+
T Consensus 167 ~k~V~VVG~G~SA~d~a~~l~~-~g~~V~~~~R~~ 200 (203)
T PF13738_consen 167 GKRVVVVGGGNSAVDIAYALAK-AGKSVTLVTRSP 200 (203)
T ss_dssp TSEEEEE--SHHHHHHHHHHTT-TCSEEEEEESS-
T ss_pred CCcEEEEcChHHHHHHHHHHHh-hCCEEEEEecCC
Confidence 3579999999999999999999 789999998875
No 377
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=89.24 E-value=4.9 Score=47.18 Aligned_cols=34 Identities=18% Similarity=0.289 Sum_probs=27.8
Q ss_pred ccEEEECCCcHHHHHHHHHhcCCCC-eEEEEcCCC
Q psy760 70 YDFIIVGAGPGGCTVANRLSEIPHW-KILLLEAGH 103 (511)
Q Consensus 70 ~DvIVVGgG~aGl~aA~~LAe~~G~-~VLVLEaG~ 103 (511)
-.|+|||||..|+-+|..+.+.+|. +|.|+++..
T Consensus 667 K~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~ 701 (1012)
T TIGR03315 667 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 701 (1012)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccC
Confidence 3689999999999999888763465 799998763
No 378
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=88.87 E-value=0.36 Score=49.99 Aligned_cols=45 Identities=18% Similarity=0.121 Sum_probs=30.4
Q ss_pred hhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCC
Q psy760 276 KKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGA 327 (511)
Q Consensus 276 ~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa 327 (511)
+...|.+|+++++|++|..++ ++++ |.+. +++ ++.|+ .||+|+..
T Consensus 219 ~~~~g~~i~l~~~V~~I~~~~--~~v~-v~~~-~g~--~~~ad-~VI~a~p~ 263 (450)
T PF01593_consen 219 AEELGGEIRLNTPVTRIERED--GGVT-VTTE-DGE--TIEAD-AVISAVPP 263 (450)
T ss_dssp HHHHGGGEESSEEEEEEEEES--SEEE-EEET-TSS--EEEES-EEEE-S-H
T ss_pred HhhcCceeecCCcceeccccc--cccc-cccc-cce--EEecc-eeeecCch
Confidence 444567999999999999987 3333 3222 333 78897 69888874
No 379
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=88.87 E-value=0.46 Score=48.14 Aligned_cols=33 Identities=18% Similarity=0.231 Sum_probs=30.3
Q ss_pred ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
-.|.|||+|..|+..|..|++ .|++|.++.|+.
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~-~g~~V~~~~r~~ 38 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLAR-AGFDVHFLLRSD 38 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHH-CCCeEEEEEeCC
Confidence 359999999999999999999 899999999874
No 380
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=88.51 E-value=0.45 Score=48.10 Aligned_cols=33 Identities=24% Similarity=0.250 Sum_probs=30.3
Q ss_pred cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760 71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104 (511)
Q Consensus 71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~ 104 (511)
.|.|||+|..|...|..|++ .|++|+++++.+.
T Consensus 4 ~V~VIG~G~mG~~iA~~la~-~G~~V~v~d~~~~ 36 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFAR-AGHEVRLWDADPA 36 (308)
T ss_pred EEEEECccHHHHHHHHHHHH-CCCeeEEEeCCHH
Confidence 58999999999999999999 7999999998753
No 381
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=88.19 E-value=7.6 Score=39.25 Aligned_cols=57 Identities=25% Similarity=0.355 Sum_probs=41.8
Q ss_pred CCCcEEEeCceEEEEEEcCCCCcEEEEEEEEC-CeEEEEEeCcEEEEccCCCCcHHHHHhcCC
Q psy760 278 RCNLTVKDSSFVKKILIDPVTKKACGVLATIK-GIDHKILARKEVILSAGAFNSPKLLMLSGI 339 (511)
Q Consensus 278 r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~-g~~~~v~A~k~VILAAGa~~SP~LL~~SGI 339 (511)
+.++.+++++.+.+|.-++ +.+|++... ++...+..+ .|.++.|..-...++...++
T Consensus 191 ~~~i~~~~~~~i~ei~G~~----v~~v~l~~~~~~~~~~~~~-gvf~~iG~~p~~~~~~~~~~ 248 (305)
T COG0492 191 NVKIEVLTNTVVKEILGDD----VEGVVLKNVKGEEKELPVD-GVFIAIGHLPNTELLKGLGV 248 (305)
T ss_pred cCCeEEEeCCceeEEecCc----cceEEEEecCCceEEEEec-eEEEecCCCCchHHHhhccc
Confidence 3489999999999996542 668888754 566678887 69999998544456665443
No 382
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.14 E-value=0.55 Score=50.61 Aligned_cols=32 Identities=22% Similarity=0.448 Sum_probs=29.6
Q ss_pred cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
.++|||+|.+|+.+|..|++ .|.+|.++|+.+
T Consensus 18 ~v~viG~G~~G~~~A~~L~~-~G~~V~~~d~~~ 49 (480)
T PRK01438 18 RVVVAGLGVSGFAAADALLE-LGARVTVVDDGD 49 (480)
T ss_pred EEEEECCCHHHHHHHHHHHH-CCCEEEEEeCCc
Confidence 69999999999999999998 899999999765
No 383
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=87.99 E-value=0.52 Score=47.32 Aligned_cols=30 Identities=33% Similarity=0.450 Sum_probs=28.2
Q ss_pred cEEEECCCcHHHHHHHHHhcCCCCeEEEEcC
Q psy760 71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEA 101 (511)
Q Consensus 71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEa 101 (511)
.|.|||+|..|+..|..|++ .|++|.++.+
T Consensus 2 kI~IiG~G~iG~~~a~~L~~-~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLE-AGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHH-CCCceEEEec
Confidence 38899999999999999999 7999999998
No 384
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=87.92 E-value=0.58 Score=46.90 Aligned_cols=30 Identities=23% Similarity=0.355 Sum_probs=28.3
Q ss_pred EEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760 72 FIIVGAGPGGCTVANRLSEIPHWKILLLEAG 102 (511)
Q Consensus 72 vIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG 102 (511)
+.|||+|..|...|..|++ .|++|.++.+.
T Consensus 3 I~IiG~G~~G~~~a~~L~~-~g~~V~~~~r~ 32 (304)
T PRK06522 3 IAILGAGAIGGLFGAALAQ-AGHDVTLVARR 32 (304)
T ss_pred EEEECCCHHHHHHHHHHHh-CCCeEEEEECC
Confidence 8999999999999999999 79999999984
No 385
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=87.62 E-value=5.8 Score=43.69 Aligned_cols=55 Identities=18% Similarity=0.082 Sum_probs=35.9
Q ss_pred CCCcEEEeCceEEEEEEcCCCCcEEEEEEEE---------------CCeEEEEEeCcEEEEccCCCCcHHHHH
Q psy760 278 RCNLTVKDSSFVKKILIDPVTKKACGVLATI---------------KGIDHKILARKEVILSAGAFNSPKLLM 335 (511)
Q Consensus 278 r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~---------------~g~~~~v~A~k~VILAAGa~~SP~LL~ 335 (511)
+.|++|++++.+++|.-+++ +++ |+++.. .++..++.++ .||+|.|-.-.+.++.
T Consensus 317 ~~GVki~~~~~~~~i~~~~~-~~~-~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D-~Vi~A~G~~p~~~~~~ 386 (564)
T PRK12771 317 REGVEINWLRTPVEIEGDEN-GAT-GLRVITVEKMELDEDGRPSPVTGEEETLEAD-LVVLAIGQDIDSAGLE 386 (564)
T ss_pred HcCCEEEecCCcEEEEcCCC-CEE-EEEEEEEEecccCCCCCeeecCCceEEEECC-EEEECcCCCCchhhhh
Confidence 45888888888888865442 333 654321 2445689998 7999999744445554
No 386
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.26 E-value=0.68 Score=49.53 Aligned_cols=32 Identities=19% Similarity=0.453 Sum_probs=29.6
Q ss_pred EEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760 72 FIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104 (511)
Q Consensus 72 vIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~ 104 (511)
|.|||.|.+|+++|..|++ .|++|++.|+...
T Consensus 3 v~viG~G~sG~s~a~~l~~-~G~~V~~~D~~~~ 34 (459)
T PRK02705 3 AHVIGLGRSGIAAARLLKA-QGWEVVVSDRNDS 34 (459)
T ss_pred EEEEccCHHHHHHHHHHHH-CCCEEEEECCCCc
Confidence 7999999999999999998 8999999998754
No 387
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.94 E-value=0.7 Score=46.22 Aligned_cols=33 Identities=15% Similarity=0.274 Sum_probs=29.9
Q ss_pred cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760 71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104 (511)
Q Consensus 71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~ 104 (511)
.|.|||+|..|...|..|++ .|++|.++|+.+.
T Consensus 5 kIaViGaG~mG~~iA~~la~-~G~~V~l~d~~~~ 37 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAF-HGFDVTIYDISDE 37 (287)
T ss_pred EEEEECCCHHHHHHHHHHHh-cCCeEEEEeCCHH
Confidence 48999999999999999999 7999999998643
No 388
>KOG3923|consensus
Probab=86.52 E-value=0.95 Score=44.91 Aligned_cols=36 Identities=22% Similarity=0.294 Sum_probs=28.2
Q ss_pred cccEEEECCCcHHHHHHHHHhc-----C-CCCeEEEEcCCCC
Q psy760 69 EYDFIIVGAGPGGCTVANRLSE-----I-PHWKILLLEAGHY 104 (511)
Q Consensus 69 ~~DvIVVGgG~aGl~aA~~LAe-----~-~G~~VLVLEaG~~ 104 (511)
..+++|||+|..||++|..+.+ . +-.+|.|++--..
T Consensus 3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~ 44 (342)
T KOG3923|consen 3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFT 44 (342)
T ss_pred CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCc
Confidence 4689999999999999977665 2 5578888875443
No 389
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=86.42 E-value=0.49 Score=49.51 Aligned_cols=38 Identities=34% Similarity=0.605 Sum_probs=31.3
Q ss_pred cccEEEECCCcHHHHHHHHHhcC------------CCCeEEEEcCCCCCC
Q psy760 69 EYDFIIVGAGPGGCTVANRLSEI------------PHWKILLLEAGHYFN 106 (511)
Q Consensus 69 ~~DvIVVGgG~aGl~aA~~LAe~------------~G~~VLVLEaG~~~~ 106 (511)
-.+++|||||+.|.=.|.+|++. ...+|.|+|+++...
T Consensus 155 ~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~IL 204 (405)
T COG1252 155 LLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRIL 204 (405)
T ss_pred eeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhc
Confidence 36799999999999999999862 124999999998754
No 390
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=86.40 E-value=0.73 Score=38.49 Aligned_cols=33 Identities=24% Similarity=0.344 Sum_probs=29.3
Q ss_pred cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760 69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG 102 (511)
Q Consensus 69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG 102 (511)
.-.++|||||..|..-+..|.+ .|.+|+|+...
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~-~gA~v~vis~~ 39 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLE-AGAKVTVISPE 39 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCC-CTBEEEEEESS
T ss_pred CCEEEEECCCHHHHHHHHHHHh-CCCEEEEECCc
Confidence 4679999999999999999999 89999999765
No 391
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.35 E-value=0.75 Score=46.07 Aligned_cols=33 Identities=24% Similarity=0.331 Sum_probs=30.5
Q ss_pred cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760 71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104 (511)
Q Consensus 71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~ 104 (511)
-|.|||+|..|...|..++. .|++|+++|+.+.
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~-~G~~V~l~d~~~~ 39 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCAR-AGVDVLVFETTEE 39 (286)
T ss_pred EEEEEcccHHHHHHHHHHHh-CCCEEEEEECCHH
Confidence 48899999999999999999 8999999998764
No 392
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.32 E-value=0.79 Score=46.65 Aligned_cols=33 Identities=15% Similarity=0.198 Sum_probs=30.0
Q ss_pred cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760 71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104 (511)
Q Consensus 71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~ 104 (511)
-|.|||+|..|...|..++. .|++|++.|..+.
T Consensus 9 ~VaVIGaG~MG~giA~~~a~-aG~~V~l~D~~~~ 41 (321)
T PRK07066 9 TFAAIGSGVIGSGWVARALA-HGLDVVAWDPAPG 41 (321)
T ss_pred EEEEECcCHHHHHHHHHHHh-CCCeEEEEeCCHH
Confidence 38899999999999999999 8999999998653
No 393
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=86.26 E-value=0.93 Score=42.91 Aligned_cols=33 Identities=21% Similarity=0.207 Sum_probs=29.4
Q ss_pred cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760 69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG 102 (511)
Q Consensus 69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG 102 (511)
.-.++|||||-.|...|..|.+ .|.+|+|+++.
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~-~ga~V~VIs~~ 42 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLK-YGAHIVVISPE 42 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHH-CCCeEEEEcCC
Confidence 3579999999999999999999 79999999753
No 394
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.17 E-value=0.71 Score=46.15 Aligned_cols=32 Identities=22% Similarity=0.374 Sum_probs=29.5
Q ss_pred EEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760 72 FIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104 (511)
Q Consensus 72 vIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~ 104 (511)
|.|||+|..|...|..|++ .|++|+++|+.+.
T Consensus 4 V~VIG~G~mG~~iA~~la~-~G~~V~~~d~~~~ 35 (288)
T PRK09260 4 LVVVGAGVMGRGIAYVFAV-SGFQTTLVDIKQE 35 (288)
T ss_pred EEEECccHHHHHHHHHHHh-CCCcEEEEeCCHH
Confidence 8999999999999999999 7999999998753
No 395
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=86.01 E-value=1 Score=38.00 Aligned_cols=32 Identities=22% Similarity=0.412 Sum_probs=28.4
Q ss_pred EEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760 72 FIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104 (511)
Q Consensus 72 vIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~ 104 (511)
|||+|.|..|..+|..|.+ .+.+|+++|+.+.
T Consensus 1 vvI~G~g~~~~~i~~~L~~-~~~~vvvid~d~~ 32 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKE-GGIDVVVIDRDPE 32 (116)
T ss_dssp EEEES-SHHHHHHHHHHHH-TTSEEEEEESSHH
T ss_pred eEEEcCCHHHHHHHHHHHh-CCCEEEEEECCcH
Confidence 7999999999999999999 7889999998753
No 396
>KOG1346|consensus
Probab=85.98 E-value=4.4 Score=42.17 Aligned_cols=50 Identities=24% Similarity=0.255 Sum_probs=35.6
Q ss_pred hhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHHh
Q psy760 276 KKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLML 336 (511)
Q Consensus 276 ~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~~ 336 (511)
+...|+-++.+..|.+|..+++ -|.+. +|. +|.=+| .+||+|. +|+-|..
T Consensus 267 ~~nGGvAvl~G~kvvkid~~d~-----~V~Ln-DG~--~I~Ydk-cLIATG~--~Pk~l~~ 316 (659)
T KOG1346|consen 267 AVNGGVAVLRGRKVVKIDEEDK-----KVILN-DGT--TIGYDK-CLIATGV--RPKKLQV 316 (659)
T ss_pred cccCceEEEeccceEEeecccC-----eEEec-CCc--Eeehhh-eeeecCc--Ccccchh
Confidence 4567899999999999977652 23343 444 566664 9999998 8875544
No 397
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=85.94 E-value=1 Score=40.85 Aligned_cols=31 Identities=16% Similarity=0.210 Sum_probs=28.0
Q ss_pred cccEEEECCCcHHHHHHHHHhcCCCCeEEEEc
Q psy760 69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLE 100 (511)
Q Consensus 69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLE 100 (511)
.-.++|||||..|.--|..|.+ .|.+|+|+.
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~-~ga~V~VIs 43 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKD-TGAFVTVVS 43 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHh-CCCEEEEEc
Confidence 3569999999999999999998 899999994
No 398
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.27 E-value=0.98 Score=48.14 Aligned_cols=33 Identities=27% Similarity=0.418 Sum_probs=30.4
Q ss_pred ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
-.++|||+|.+|+.+|..|++ .|++|.++|+..
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~-~G~~V~~~d~~~ 38 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKK-LGAKVILTDEKE 38 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHH-CCCEEEEEeCCc
Confidence 458999999999999999999 899999999864
No 399
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=84.76 E-value=0.98 Score=46.20 Aligned_cols=32 Identities=25% Similarity=0.509 Sum_probs=29.4
Q ss_pred cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
.|.|||+|..|...|..|++ .|++|.++++..
T Consensus 4 kI~IiG~G~mG~~~A~~L~~-~G~~V~~~~r~~ 35 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAA-AGADVTLIGRAR 35 (341)
T ss_pred eEEEECCCHHHHHHHHHHHh-cCCcEEEEecHH
Confidence 48999999999999999999 799999999853
No 400
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=84.35 E-value=1.3 Score=41.93 Aligned_cols=35 Identities=26% Similarity=0.308 Sum_probs=31.2
Q ss_pred CcccEEEECCCcHHHHHHHHHhcCCCC-eEEEEcCCC
Q psy760 68 LEYDFIIVGAGPGGCTVANRLSEIPHW-KILLLEAGH 103 (511)
Q Consensus 68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~-~VLVLEaG~ 103 (511)
....|+|||+|..|+.+|..|++ .|. +|.|+|...
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~-~Gvg~i~lvD~D~ 55 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLAR-AGIGKLILVDFDV 55 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHH-cCCCEEEEECCCE
Confidence 45789999999999999999999 898 699999763
No 401
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=84.01 E-value=1.4 Score=41.90 Aligned_cols=32 Identities=16% Similarity=0.199 Sum_probs=28.9
Q ss_pred ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760 70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG 102 (511)
Q Consensus 70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG 102 (511)
--++|||||..|..-|..|.+ .|.+|+|+...
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~-~ga~VtVvsp~ 41 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLK-AGAQLRVIAEE 41 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHH-CCCEEEEEcCC
Confidence 369999999999999999999 89999999754
No 402
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=83.96 E-value=1.2 Score=44.58 Aligned_cols=32 Identities=22% Similarity=0.349 Sum_probs=29.5
Q ss_pred cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
.|.|||+|..|...|..|++ .|++|+++|+.+
T Consensus 6 kI~vIGaG~mG~~iA~~la~-~G~~V~l~d~~~ 37 (292)
T PRK07530 6 KVGVIGAGQMGNGIAHVCAL-AGYDVLLNDVSA 37 (292)
T ss_pred EEEEECCcHHHHHHHHHHHH-CCCeEEEEeCCH
Confidence 48999999999999999999 799999999864
No 403
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=83.31 E-value=1.3 Score=44.24 Aligned_cols=33 Identities=15% Similarity=0.310 Sum_probs=29.8
Q ss_pred cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760 71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104 (511)
Q Consensus 71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~ 104 (511)
.|.|||+|..|...|..|+. .|.+|.++|+.+.
T Consensus 5 ~I~ViGaG~mG~~iA~~la~-~G~~V~l~d~~~~ 37 (291)
T PRK06035 5 VIGVVGSGVMGQGIAQVFAR-TGYDVTIVDVSEE 37 (291)
T ss_pred EEEEECccHHHHHHHHHHHh-cCCeEEEEeCCHH
Confidence 38899999999999999999 7999999998753
No 404
>PRK04148 hypothetical protein; Provisional
Probab=83.17 E-value=1 Score=39.62 Aligned_cols=33 Identities=18% Similarity=0.358 Sum_probs=29.1
Q ss_pred ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760 70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104 (511)
Q Consensus 70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~ 104 (511)
-.+++||.| .|..+|..|++ .|.+|+.+|..+.
T Consensus 18 ~kileIG~G-fG~~vA~~L~~-~G~~ViaIDi~~~ 50 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKE-SGFDVIVIDINEK 50 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHH-CCCEEEEEECCHH
Confidence 459999999 88888999998 7999999998764
No 405
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=83.06 E-value=1.3 Score=45.01 Aligned_cols=32 Identities=31% Similarity=0.399 Sum_probs=29.1
Q ss_pred cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
.+.|||+|..|...|..|++ .|++|.++.|..
T Consensus 2 kI~IiGaGa~G~ala~~L~~-~g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSS-KKISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHH-CCCeEEEEecCH
Confidence 37899999999999999999 799999999854
No 406
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=82.65 E-value=1.5 Score=45.04 Aligned_cols=36 Identities=28% Similarity=0.329 Sum_probs=31.8
Q ss_pred CcccEEEECCCcHHHHHHHHHhcCCCC-eEEEEcCCCC
Q psy760 68 LEYDFIIVGAGPGGCTVANRLSEIPHW-KILLLEAGHY 104 (511)
Q Consensus 68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~-~VLVLEaG~~ 104 (511)
...-|+|||+|..|+.+|..|++ .|. ++.|+|....
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~-aGvg~i~lvD~D~v 59 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVR-AGIGKLTIADRDYV 59 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHH-cCCCEEEEEcCCcc
Confidence 45679999999999999999999 887 8999998753
No 407
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=82.20 E-value=1.7 Score=43.02 Aligned_cols=35 Identities=23% Similarity=0.301 Sum_probs=31.2
Q ss_pred CcccEEEECCCcHHHHHHHHHhcCCC-CeEEEEcCCC
Q psy760 68 LEYDFIIVGAGPGGCTVANRLSEIPH-WKILLLEAGH 103 (511)
Q Consensus 68 ~~~DvIVVGgG~aGl~aA~~LAe~~G-~~VLVLEaG~ 103 (511)
....|+|||.|..|+.+|..|++ .| .+++|+|...
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar-~GVg~itLiD~D~ 64 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALAR-TGIGAITLIDMDD 64 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHH-cCCCEEEEEeCCE
Confidence 46789999999999999999999 78 5899999764
No 408
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=82.19 E-value=1.8 Score=44.18 Aligned_cols=32 Identities=19% Similarity=0.197 Sum_probs=29.6
Q ss_pred cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
.|.|||+|..|...|.+|++ .|++|.++++.+
T Consensus 6 ~I~iIG~G~mG~~ia~~L~~-~G~~V~~~~r~~ 37 (328)
T PRK14618 6 RVAVLGAGAWGTALAVLAAS-KGVPVRLWARRP 37 (328)
T ss_pred eEEEECcCHHHHHHHHHHHH-CCCeEEEEeCCH
Confidence 48999999999999999999 799999999864
No 409
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=82.17 E-value=3.3 Score=46.10 Aligned_cols=62 Identities=18% Similarity=0.146 Sum_probs=45.7
Q ss_pred hhHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCCCCcHHHHHhcCC
Q psy760 271 YIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGI 339 (511)
Q Consensus 271 ~L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa~~SP~LL~~SGI 339 (511)
.|....++.|++++++..++.|.-+ +++.+|++.++. .+.|+ -||.|+|.--.-.+-..+||
T Consensus 192 lL~~~le~~Gi~~~l~~~t~ei~g~---~~~~~vr~~DG~---~i~ad-~VV~a~GIrPn~ela~~aGl 253 (793)
T COG1251 192 LLRRKLEDLGIKVLLEKNTEEIVGE---DKVEGVRFADGT---EIPAD-LVVMAVGIRPNDELAKEAGL 253 (793)
T ss_pred HHHHHHHhhcceeecccchhhhhcC---cceeeEeecCCC---cccce-eEEEecccccccHhHHhcCc
Confidence 4555567889999999988888753 578888887543 57887 69999998444456666665
No 410
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=81.94 E-value=1.4 Score=43.92 Aligned_cols=33 Identities=15% Similarity=0.350 Sum_probs=29.7
Q ss_pred cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760 71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104 (511)
Q Consensus 71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~ 104 (511)
.|.|||+|..|...|..|++ .|++|+++|..+.
T Consensus 5 kI~VIG~G~mG~~ia~~la~-~g~~V~~~d~~~~ 37 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAV-AGYDVVMVDISDA 37 (282)
T ss_pred EEEEEccCHHHHHHHHHHHH-CCCceEEEeCCHH
Confidence 48999999999999999999 7999999997643
No 411
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=81.70 E-value=2 Score=38.01 Aligned_cols=32 Identities=28% Similarity=0.399 Sum_probs=28.7
Q ss_pred EEEECCCcHHHHHHHHHhcCCCC-eEEEEcCCCC
Q psy760 72 FIIVGAGPGGCTVANRLSEIPHW-KILLLEAGHY 104 (511)
Q Consensus 72 vIVVGgG~aGl~aA~~LAe~~G~-~VLVLEaG~~ 104 (511)
|+|||.|..|+.+|..|++ .|. ++.|+|....
T Consensus 2 VliiG~GglGs~ia~~L~~-~Gv~~i~ivD~d~v 34 (143)
T cd01483 2 VLLVGLGGLGSEIALNLAR-SGVGKITLIDFDTV 34 (143)
T ss_pred EEEECCCHHHHHHHHHHHH-CCCCEEEEEcCCCc
Confidence 7899999999999999999 787 7999997643
No 412
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=81.30 E-value=1.8 Score=37.97 Aligned_cols=35 Identities=23% Similarity=0.273 Sum_probs=30.2
Q ss_pred CcccEEEECCCcHHHHHHHHHhcCCCCe-EEEEcCCC
Q psy760 68 LEYDFIIVGAGPGGCTVANRLSEIPHWK-ILLLEAGH 103 (511)
Q Consensus 68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~-VLVLEaG~ 103 (511)
+.-.++|||+|-+|-.++..|++ .|.+ |.|+-|..
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~-~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAA-LGAKEITIVNRTP 46 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHH-TTSSEEEEEESSH
T ss_pred CCCEEEEECCHHHHHHHHHHHHH-cCCCEEEEEECCH
Confidence 34679999999999999999999 6775 99998864
No 413
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=81.19 E-value=1.6 Score=45.08 Aligned_cols=32 Identities=16% Similarity=0.320 Sum_probs=29.3
Q ss_pred cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
.+.|||+|..|++.|.-||+ -|+.|+.+|..+
T Consensus 2 kI~viGtGYVGLv~g~~lA~-~GHeVv~vDid~ 33 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAE-LGHEVVCVDIDE 33 (414)
T ss_pred ceEEECCchHHHHHHHHHHH-cCCeEEEEeCCH
Confidence 47899999999999999999 899999999754
No 414
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=81.03 E-value=2 Score=44.16 Aligned_cols=35 Identities=26% Similarity=0.350 Sum_probs=31.7
Q ss_pred CcccEEEECCCcHHHHHHHHHhcCCCC-eEEEEcCCC
Q psy760 68 LEYDFIIVGAGPGGCTVANRLSEIPHW-KILLLEAGH 103 (511)
Q Consensus 68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~-~VLVLEaG~ 103 (511)
....|+|||+|..|+.+|..|++ .|. ++.|+|...
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~-aGvg~i~lvD~D~ 58 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVR-AGVGKVTIVDRDY 58 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHH-cCCCeEEEEeCCc
Confidence 46789999999999999999999 788 899999864
No 415
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=80.97 E-value=1.8 Score=37.87 Aligned_cols=34 Identities=32% Similarity=0.438 Sum_probs=29.5
Q ss_pred ccEEEECCCcHHHHHHHHHhcCCCC-eEEEEcCCCC
Q psy760 70 YDFIIVGAGPGGCTVANRLSEIPHW-KILLLEAGHY 104 (511)
Q Consensus 70 ~DvIVVGgG~aGl~aA~~LAe~~G~-~VLVLEaG~~ 104 (511)
.-|+|||+|..|+.+|..|++ .|. ++.|+|....
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~-~Gv~~i~lvD~d~v 37 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLAR-SGVGKITLVDDDIV 37 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHH-HTTSEEEEEESSBB
T ss_pred CEEEEECcCHHHHHHHHHHHH-hCCCceeecCCcce
Confidence 458999999999999999999 787 7999997743
No 416
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=80.92 E-value=1.7 Score=43.96 Aligned_cols=32 Identities=22% Similarity=0.315 Sum_probs=29.6
Q ss_pred cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
.|.|||+|..|...|..|++ .|+.|.++++.+
T Consensus 3 kI~iiG~G~mG~~~a~~L~~-~g~~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLAR-NGHDVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCCEEEEEECCH
Confidence 48999999999999999999 799999999864
No 417
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=80.64 E-value=1.9 Score=44.89 Aligned_cols=34 Identities=21% Similarity=0.407 Sum_probs=29.8
Q ss_pred cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760 71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104 (511)
Q Consensus 71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~ 104 (511)
+++|||+|..|.++|..||++...+|+|.+|...
T Consensus 3 ~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~ 36 (389)
T COG1748 3 KILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKE 36 (389)
T ss_pred cEEEECCchhHHHHHHHHHhCCCceEEEEeCCHH
Confidence 6899999999999999999943389999999853
No 418
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=80.11 E-value=2 Score=44.75 Aligned_cols=34 Identities=21% Similarity=0.237 Sum_probs=30.3
Q ss_pred cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
..+++|||+|.+|..+|..|.. .|.+|.++++..
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~-lGa~V~v~d~~~ 200 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANG-LGATVTILDINI 200 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHH-CCCeEEEEECCH
Confidence 4569999999999999999998 799999999864
No 419
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=80.02 E-value=1.8 Score=43.79 Aligned_cols=32 Identities=28% Similarity=0.465 Sum_probs=29.2
Q ss_pred EEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760 72 FIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104 (511)
Q Consensus 72 vIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~ 104 (511)
+.|+|+|+.|+..|++|++ .|..|+++=|.+.
T Consensus 3 I~IlGaGAvG~l~g~~L~~-~g~~V~~~~R~~~ 34 (307)
T COG1893 3 ILILGAGAIGSLLGARLAK-AGHDVTLLVRSRR 34 (307)
T ss_pred EEEECCcHHHHHHHHHHHh-CCCeEEEEecHHH
Confidence 7899999999999999999 7889999988764
No 420
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=79.95 E-value=2 Score=43.07 Aligned_cols=32 Identities=25% Similarity=0.344 Sum_probs=29.5
Q ss_pred EEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760 72 FIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104 (511)
Q Consensus 72 vIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~ 104 (511)
|.|||+|..|...|..|+. .|.+|.++|+.+.
T Consensus 7 V~vIG~G~mG~~iA~~l~~-~G~~V~~~d~~~~ 38 (295)
T PLN02545 7 VGVVGAGQMGSGIAQLAAA-AGMDVWLLDSDPA 38 (295)
T ss_pred EEEECCCHHHHHHHHHHHh-cCCeEEEEeCCHH
Confidence 8999999999999999999 8999999998753
No 421
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=79.82 E-value=1.9 Score=45.55 Aligned_cols=33 Identities=15% Similarity=0.240 Sum_probs=29.9
Q ss_pred cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760 71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104 (511)
Q Consensus 71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~ 104 (511)
.|.|||.|..|+..|..|++ .|++|+++++.+.
T Consensus 2 kI~vIGlG~~G~~lA~~La~-~G~~V~~~d~~~~ 34 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLAD-LGHEVTGVDIDQE 34 (411)
T ss_pred EEEEECCCchhHHHHHHHHh-cCCeEEEEECCHH
Confidence 37899999999999999999 8999999998653
No 422
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=79.78 E-value=2.4 Score=40.02 Aligned_cols=33 Identities=21% Similarity=0.314 Sum_probs=29.8
Q ss_pred ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
--++|+|.|-.|..+|.+|.+ .|.+|++.|+..
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~-~G~~Vvv~D~~~ 61 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLE-EGAKLIVADINE 61 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHH-CCCEEEEEcCCH
Confidence 359999999999999999999 899999998764
No 423
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=79.45 E-value=2.7 Score=38.53 Aligned_cols=35 Identities=14% Similarity=0.152 Sum_probs=30.4
Q ss_pred CcccEEEECCCc-HHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 68 LEYDFIIVGAGP-GGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 68 ~~~DvIVVGgG~-aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
....++|||+|- +|..+|..|.+ .|.+|.|+.|..
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~-~g~~V~v~~r~~ 78 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLN-RNATVTVCHSKT 78 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhh-CCCEEEEEECCc
Confidence 467899999995 69999999998 788999999863
No 424
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=79.35 E-value=2.5 Score=42.71 Aligned_cols=32 Identities=22% Similarity=0.470 Sum_probs=29.3
Q ss_pred cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
.|.|||+|..|...|..|++ .|++|+++++..
T Consensus 6 ~I~vIGaG~mG~~iA~~l~~-~g~~V~~~d~~~ 37 (311)
T PRK06130 6 NLAIIGAGTMGSGIAALFAR-KGLQVVLIDVME 37 (311)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCCeEEEEECCH
Confidence 48999999999999999999 899999999764
No 425
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=79.24 E-value=2.3 Score=43.06 Aligned_cols=31 Identities=35% Similarity=0.521 Sum_probs=27.6
Q ss_pred cEEEECCCcHHHHHHHHHhcCCCC-eEEEEcCC
Q psy760 71 DFIIVGAGPGGCTVANRLSEIPHW-KILLLEAG 102 (511)
Q Consensus 71 DvIVVGgG~aGl~aA~~LAe~~G~-~VLVLEaG 102 (511)
-+.|||+|..|+.+|..|+. .|. +|+++|.-
T Consensus 3 KV~VIGaG~vG~~iA~~la~-~g~~~VvlvDi~ 34 (305)
T TIGR01763 3 KISVIGAGFVGATTAFRLAE-KELADLVLLDVV 34 (305)
T ss_pred EEEEECcCHHHHHHHHHHHH-cCCCeEEEEeCC
Confidence 48899999999999999998 565 89999984
No 426
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=78.76 E-value=2.5 Score=38.96 Aligned_cols=31 Identities=26% Similarity=0.274 Sum_probs=28.2
Q ss_pred EEEECCCcHHHHHHHHHhcCCCC-eEEEEcCCC
Q psy760 72 FIIVGAGPGGCTVANRLSEIPHW-KILLLEAGH 103 (511)
Q Consensus 72 vIVVGgG~aGl~aA~~LAe~~G~-~VLVLEaG~ 103 (511)
|+|||+|..|+.+|..|++ .|. ++.++|...
T Consensus 2 VlViG~GglGs~ia~~La~-~Gvg~i~lvD~D~ 33 (174)
T cd01487 2 VGIAGAGGLGSNIAVLLAR-SGVGNLKLVDFDV 33 (174)
T ss_pred EEEECcCHHHHHHHHHHHH-cCCCeEEEEeCCE
Confidence 7899999999999999999 788 599999864
No 427
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=78.64 E-value=2.2 Score=45.20 Aligned_cols=33 Identities=12% Similarity=0.231 Sum_probs=30.0
Q ss_pred cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760 71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104 (511)
Q Consensus 71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~ 104 (511)
-|.|||.|..|+..|..|++ .|++|.++++.+.
T Consensus 5 kI~VIGlG~~G~~~A~~La~-~G~~V~~~D~~~~ 37 (415)
T PRK11064 5 TISVIGLGYIGLPTAAAFAS-RQKQVIGVDINQH 37 (415)
T ss_pred EEEEECcchhhHHHHHHHHh-CCCEEEEEeCCHH
Confidence 48999999999999999999 8999999998654
No 428
>KOG2495|consensus
Probab=78.32 E-value=1.1 Score=46.60 Aligned_cols=40 Identities=30% Similarity=0.500 Sum_probs=32.3
Q ss_pred ccCCcccEEEECCCcHHHHHHHHHhc-------------CCCCeEEEEcCCCC
Q psy760 65 DLLLEYDFIIVGAGPGGCTVANRLSE-------------IPHWKILLLEAGHY 104 (511)
Q Consensus 65 ~~~~~~DvIVVGgG~aGl~aA~~LAe-------------~~G~~VLVLEaG~~ 104 (511)
+-..---+||||||+.|.-.|.+|+. ..-.+|+++|+.+.
T Consensus 214 erkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~ 266 (491)
T KOG2495|consen 214 ERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADH 266 (491)
T ss_pred HhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchh
Confidence 34455789999999999999999975 12468999999975
No 429
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=77.96 E-value=2.7 Score=42.52 Aligned_cols=33 Identities=33% Similarity=0.328 Sum_probs=28.9
Q ss_pred cEEEECCCcHHHHHHHHHhcCCC--CeEEEEcCCCC
Q psy760 71 DFIIVGAGPGGCTVANRLSEIPH--WKILLLEAGHY 104 (511)
Q Consensus 71 DvIVVGgG~aGl~aA~~LAe~~G--~~VLVLEaG~~ 104 (511)
.+.|||+|..|.++|..|++ .| ..|.++|+...
T Consensus 2 kI~IIGaG~VG~~~a~~l~~-~g~~~ev~l~D~~~~ 36 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLL-RGLASEIVLVDINKA 36 (308)
T ss_pred EEEEECCCHHHHHHHHHHHH-cCCCCEEEEEECCch
Confidence 48999999999999999998 67 58999998653
No 430
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=77.78 E-value=2.9 Score=38.15 Aligned_cols=34 Identities=15% Similarity=0.165 Sum_probs=29.0
Q ss_pred cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
..-|+|+|+|.+|..||.-|.. -|.+|.++|...
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~-lGa~v~~~d~~~ 53 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKG-LGAEVVVPDERP 53 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHH-TT-EEEEEESSH
T ss_pred CeEEEEECCCHHHHHHHHHHhH-CCCEEEeccCCH
Confidence 3779999999999999999888 899999999764
No 431
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=76.94 E-value=2.7 Score=44.66 Aligned_cols=32 Identities=13% Similarity=0.230 Sum_probs=29.2
Q ss_pred cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
-++|+|+|..|.++|..|++ .|.+|++.|+..
T Consensus 7 ~v~v~G~g~~G~s~a~~l~~-~G~~V~~~d~~~ 38 (447)
T PRK02472 7 KVLVLGLAKSGYAAAKLLHK-LGANVTVNDGKP 38 (447)
T ss_pred EEEEEeeCHHHHHHHHHHHH-CCCEEEEEcCCC
Confidence 38999999999999999999 899999999764
No 432
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=76.88 E-value=2.7 Score=45.57 Aligned_cols=33 Identities=21% Similarity=0.368 Sum_probs=30.2
Q ss_pred cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760 71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104 (511)
Q Consensus 71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~ 104 (511)
-|.|||+|..|...|..|+. .|++|.|.|+.+.
T Consensus 7 kV~VIGaG~MG~gIA~~la~-aG~~V~l~d~~~e 39 (503)
T TIGR02279 7 TVAVIGAGAMGAGIAQVAAS-AGHQVLLYDIRAE 39 (503)
T ss_pred EEEEECcCHHHHHHHHHHHh-CCCeEEEEeCCHH
Confidence 38999999999999999999 8999999998754
No 433
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=76.64 E-value=2.7 Score=40.58 Aligned_cols=33 Identities=24% Similarity=0.406 Sum_probs=29.1
Q ss_pred ccEEEECCCcHHHHHHHHHhcCCCC---eEEEEcCCC
Q psy760 70 YDFIIVGAGPGGCTVANRLSEIPHW---KILLLEAGH 103 (511)
Q Consensus 70 ~DvIVVGgG~aGl~aA~~LAe~~G~---~VLVLEaG~ 103 (511)
-.++|+|+|.+|..+|..|.+ .|. +|.|++|.+
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~-~G~~~~~i~ivdr~g 61 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLA-AGAKPENIVVVDSKG 61 (226)
T ss_pred CEEEEECchHHHHHHHHHHHH-cCcCcceEEEEeCCC
Confidence 469999999999999999998 676 599999974
No 434
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=76.53 E-value=2.5 Score=42.34 Aligned_cols=36 Identities=17% Similarity=0.195 Sum_probs=31.3
Q ss_pred CcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760 68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104 (511)
Q Consensus 68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~ 104 (511)
..-+|+|||||.+|.-+|.-+.- -|.+|+++|....
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~g-lgA~Vtild~n~~ 202 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIG-LGADVTILDLNID 202 (371)
T ss_pred CCccEEEECCccccchHHHHHhc-cCCeeEEEecCHH
Confidence 34689999999999999988777 7999999998753
No 435
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=76.41 E-value=3.7 Score=38.78 Aligned_cols=36 Identities=31% Similarity=0.474 Sum_probs=31.7
Q ss_pred CCcccEEEECCCcHHHHHHHHHhcCCCC-eEEEEcCCC
Q psy760 67 LLEYDFIIVGAGPGGCTVANRLSEIPHW-KILLLEAGH 103 (511)
Q Consensus 67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~-~VLVLEaG~ 103 (511)
..+.-|+|||.|..|+.+|..|++ .|. ++.|+|...
T Consensus 19 l~~~~VlviG~GglGs~ia~~La~-~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 19 LLNSHVLIIGAGGLGSPAALYLAG-AGVGTIVIVDDDH 55 (202)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHH-cCCCeEEEecCCE
Confidence 346789999999999999999999 786 899999864
No 436
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=76.32 E-value=3.1 Score=43.86 Aligned_cols=35 Identities=17% Similarity=0.190 Sum_probs=30.4
Q ss_pred cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760 69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104 (511)
Q Consensus 69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~ 104 (511)
.-.|+|+|.|..|..+|..|.. .|.+|+++|..+.
T Consensus 202 GktVvViG~G~IG~~va~~ak~-~Ga~ViV~d~d~~ 236 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRG-QGARVIVTEVDPI 236 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHH-CCCEEEEEECChh
Confidence 3469999999999999999987 7999999998653
No 437
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=76.18 E-value=3.6 Score=40.09 Aligned_cols=36 Identities=25% Similarity=0.386 Sum_probs=31.1
Q ss_pred CcccEEEECCCcHHHHHHHHHhcCCCC-eEEEEcCCCC
Q psy760 68 LEYDFIIVGAGPGGCTVANRLSEIPHW-KILLLEAGHY 104 (511)
Q Consensus 68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~-~VLVLEaG~~ 104 (511)
....|+|||.|..|+.+|..|++ .|. ++.++|....
T Consensus 23 ~~~~VlvvG~GglGs~va~~La~-~Gvg~i~lvD~D~v 59 (240)
T TIGR02355 23 KASRVLIVGLGGLGCAASQYLAA-AGVGNLTLLDFDTV 59 (240)
T ss_pred hCCcEEEECcCHHHHHHHHHHHH-cCCCEEEEEeCCcc
Confidence 45789999999999999999999 676 7888887643
No 438
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=76.06 E-value=3.3 Score=41.37 Aligned_cols=33 Identities=21% Similarity=0.355 Sum_probs=29.3
Q ss_pred ccEEEECCCcHHHHHHHHHhcCCCC-eEEEEcCCC
Q psy760 70 YDFIIVGAGPGGCTVANRLSEIPHW-KILLLEAGH 103 (511)
Q Consensus 70 ~DvIVVGgG~aGl~aA~~LAe~~G~-~VLVLEaG~ 103 (511)
-.++|||+|.+|.++|..|++ .|. +|.|++|..
T Consensus 128 k~vlIlGaGGaaraia~aL~~-~G~~~I~I~nR~~ 161 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLT-LGVERLTIFDVDP 161 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHH-cCCCEEEEECCCH
Confidence 469999999999999999998 676 799999864
No 439
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=75.41 E-value=3.6 Score=39.32 Aligned_cols=31 Identities=26% Similarity=0.363 Sum_probs=27.9
Q ss_pred EEEEC-CCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 72 FIIVG-AGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 72 vIVVG-gG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
+.||| +|..|...|..|++ .|++|.+..+.+
T Consensus 3 I~IIGG~G~mG~ala~~L~~-~G~~V~v~~r~~ 34 (219)
T TIGR01915 3 IAVLGGTGDQGKGLALRLAK-AGNKIIIGSRDL 34 (219)
T ss_pred EEEEcCCCHHHHHHHHHHHh-CCCEEEEEEcCH
Confidence 78997 79999999999999 799999998764
No 440
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=75.31 E-value=3.1 Score=44.37 Aligned_cols=34 Identities=21% Similarity=0.310 Sum_probs=31.3
Q ss_pred ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760 70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104 (511)
Q Consensus 70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~ 104 (511)
-+|+|||+|.+|.-+|..|++ .|.+|.++=|.+.
T Consensus 176 KrV~VIG~GaSA~di~~~l~~-~ga~vt~~qRs~~ 209 (443)
T COG2072 176 KRVLVIGAGASAVDIAPELAE-VGASVTLSQRSPP 209 (443)
T ss_pred CeEEEECCCccHHHHHHHHHh-cCCeeEEEecCCC
Confidence 479999999999999999999 7899999998864
No 441
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=75.25 E-value=3.8 Score=41.35 Aligned_cols=32 Identities=25% Similarity=0.319 Sum_probs=29.6
Q ss_pred cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
.|.|||+|..|...|.+|++ .|++|.+..+..
T Consensus 6 ~I~iiG~G~~G~~lA~~l~~-~G~~V~~~~r~~ 37 (308)
T PRK14619 6 TIAILGAGAWGSTLAGLASA-NGHRVRVWSRRS 37 (308)
T ss_pred EEEEECccHHHHHHHHHHHH-CCCEEEEEeCCC
Confidence 48999999999999999999 799999999864
No 442
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=75.23 E-value=3.8 Score=41.42 Aligned_cols=32 Identities=25% Similarity=0.421 Sum_probs=28.3
Q ss_pred EEEECCCcHHHHHHHHHhcCCC--CeEEEEcCCCC
Q psy760 72 FIIVGAGPGGCTVANRLSEIPH--WKILLLEAGHY 104 (511)
Q Consensus 72 vIVVGgG~aGl~aA~~LAe~~G--~~VLVLEaG~~ 104 (511)
|.|||+|..|.++|..|++ .| ..|.++++...
T Consensus 3 I~IIGaG~vG~~~a~~l~~-~g~~~ei~l~D~~~~ 36 (306)
T cd05291 3 VVIIGAGHVGSSFAYSLVN-QGIADELVLIDINEE 36 (306)
T ss_pred EEEECCCHHHHHHHHHHHh-cCCCCEEEEEeCCcc
Confidence 7999999999999999998 57 48999998654
No 443
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=75.16 E-value=3.2 Score=44.62 Aligned_cols=34 Identities=15% Similarity=0.251 Sum_probs=28.9
Q ss_pred cEEEECCCcHHHHHHHHHhcC-CCCeEEEEcCCCC
Q psy760 71 DFIIVGAGPGGCTVANRLSEI-PHWKILLLEAGHY 104 (511)
Q Consensus 71 DvIVVGgG~aGl~aA~~LAe~-~G~~VLVLEaG~~ 104 (511)
.|.|||.|..|+.+|..||+. .|++|+.+|....
T Consensus 3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~ 37 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVP 37 (473)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHH
Confidence 489999999999999999983 2688999997643
No 444
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=75.06 E-value=3.1 Score=47.26 Aligned_cols=33 Identities=15% Similarity=0.237 Sum_probs=30.3
Q ss_pred cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760 71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104 (511)
Q Consensus 71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~ 104 (511)
-|.|||+|..|.-+|..+|. .|++|.++|..+.
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~-~G~~V~l~d~~~~ 347 (715)
T PRK11730 315 QAAVLGAGIMGGGIAYQSAS-KGVPVIMKDINQK 347 (715)
T ss_pred eEEEECCchhHHHHHHHHHh-CCCeEEEEeCCHH
Confidence 48999999999999999999 8999999998754
No 445
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=75.05 E-value=3.1 Score=45.05 Aligned_cols=33 Identities=15% Similarity=0.130 Sum_probs=30.0
Q ss_pred cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760 71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104 (511)
Q Consensus 71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~ 104 (511)
.|.|||+|..|...|..|+. .|++|+|.++.+.
T Consensus 6 kIavIG~G~MG~~iA~~la~-~G~~V~v~D~~~~ 38 (495)
T PRK07531 6 KAACIGGGVIGGGWAARFLL-AGIDVAVFDPHPE 38 (495)
T ss_pred EEEEECcCHHHHHHHHHHHh-CCCeEEEEeCCHH
Confidence 48899999999999999999 8999999998654
No 446
>PRK08328 hypothetical protein; Provisional
Probab=74.88 E-value=3.8 Score=39.60 Aligned_cols=35 Identities=29% Similarity=0.384 Sum_probs=30.2
Q ss_pred CcccEEEECCCcHHHHHHHHHhcCCCC-eEEEEcCCC
Q psy760 68 LEYDFIIVGAGPGGCTVANRLSEIPHW-KILLLEAGH 103 (511)
Q Consensus 68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~-~VLVLEaG~ 103 (511)
...-|+|||+|..|+.+|..|+. .|. ++.|+|...
T Consensus 26 ~~~~VlIiG~GGlGs~ia~~La~-~Gvg~i~lvD~D~ 61 (231)
T PRK08328 26 KKAKVAVVGVGGLGSPVAYYLAA-AGVGRILLIDEQT 61 (231)
T ss_pred hCCcEEEECCCHHHHHHHHHHHH-cCCCEEEEEcCCc
Confidence 45779999999999999999999 676 688887654
No 447
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=74.62 E-value=3.9 Score=39.87 Aligned_cols=36 Identities=19% Similarity=0.292 Sum_probs=29.8
Q ss_pred CCcccEEEECCCcHHHHHHHHHhcCC-----------CCeEEEEcCCC
Q psy760 67 LLEYDFIIVGAGPGGCTVANRLSEIP-----------HWKILLLEAGH 103 (511)
Q Consensus 67 ~~~~DvIVVGgG~aGl~aA~~LAe~~-----------G~~VLVLEaG~ 103 (511)
.....|+|||+|..|+.+|..||+ . |.++.|+|...
T Consensus 9 ~~~~~V~vvG~GGlGs~v~~~Lar-~G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 9 SRPVSVVLVGAGGTGSQVIAGLAR-LHHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred hCCCeEEEEcCChHHHHHHHHHHH-ccccccccCCCCCCEEEEECCCE
Confidence 356889999999999999999998 4 23888888654
No 448
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=74.32 E-value=4 Score=39.89 Aligned_cols=36 Identities=22% Similarity=0.396 Sum_probs=31.4
Q ss_pred CCcccEEEECCCcHHHHHHHHHhcCCCC-eEEEEcCCC
Q psy760 67 LLEYDFIIVGAGPGGCTVANRLSEIPHW-KILLLEAGH 103 (511)
Q Consensus 67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~-~VLVLEaG~ 103 (511)
.....|+|||.|..|+.+|..|+. .|. ++.|+|...
T Consensus 30 L~~~~VliiG~GglGs~va~~La~-~Gvg~i~lvD~D~ 66 (245)
T PRK05690 30 LKAARVLVVGLGGLGCAASQYLAA-AGVGTLTLVDFDT 66 (245)
T ss_pred hcCCeEEEECCCHHHHHHHHHHHH-cCCCEEEEEcCCE
Confidence 356889999999999999999999 786 799998764
No 449
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=74.31 E-value=3.6 Score=44.75 Aligned_cols=33 Identities=24% Similarity=0.365 Sum_probs=30.1
Q ss_pred EEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCC
Q psy760 72 FIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 105 (511)
Q Consensus 72 vIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~ 105 (511)
|.|||+|..|...|..|+. .|+.|.|.|+.+..
T Consensus 10 V~VIGaG~MG~gIA~~la~-aG~~V~l~D~~~e~ 42 (507)
T PRK08268 10 VAVIGAGAMGAGIAQVAAQ-AGHTVLLYDARAGA 42 (507)
T ss_pred EEEECCCHHHHHHHHHHHh-CCCeEEEEeCCHHH
Confidence 8899999999999999999 89999999987643
No 450
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=74.29 E-value=3.3 Score=46.97 Aligned_cols=33 Identities=18% Similarity=0.226 Sum_probs=30.4
Q ss_pred cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760 71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104 (511)
Q Consensus 71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~ 104 (511)
-|.|||+|..|.-.|..+|. .|+.|.++|....
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~-~G~~V~l~d~~~~ 347 (714)
T TIGR02437 315 QAAVLGAGIMGGGIAYQSAS-KGTPIVMKDINQH 347 (714)
T ss_pred eEEEECCchHHHHHHHHHHh-CCCeEEEEeCCHH
Confidence 48999999999999999999 8999999998754
No 451
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=74.28 E-value=3.4 Score=41.36 Aligned_cols=33 Identities=15% Similarity=0.249 Sum_probs=28.7
Q ss_pred ccEEEECCCcHHHHHHHHHhcCCCCe-EEEEcCCC
Q psy760 70 YDFIIVGAGPGGCTVANRLSEIPHWK-ILLLEAGH 103 (511)
Q Consensus 70 ~DvIVVGgG~aGl~aA~~LAe~~G~~-VLVLEaG~ 103 (511)
--++|+|+|-+|.++|..|++ .|.+ |.|+.|..
T Consensus 127 k~vlI~GAGGagrAia~~La~-~G~~~V~I~~R~~ 160 (289)
T PRK12548 127 KKLTVIGAGGAATAIQVQCAL-DGAKEITIFNIKD 160 (289)
T ss_pred CEEEEECCcHHHHHHHHHHHH-CCCCEEEEEeCCc
Confidence 358999999999999999998 7875 99998864
No 452
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=73.42 E-value=5.2 Score=40.75 Aligned_cols=36 Identities=14% Similarity=0.225 Sum_probs=30.7
Q ss_pred CcccEEEECCCcHHHHHHHHHhcCCCC-eEEEEcCCCC
Q psy760 68 LEYDFIIVGAGPGGCTVANRLSEIPHW-KILLLEAGHY 104 (511)
Q Consensus 68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~-~VLVLEaG~~ 104 (511)
+..-|.|||+|..|..+|..++. .|. +|.|+|..+.
T Consensus 5 ~~~KI~IIGaG~vG~~ia~~la~-~gl~~i~LvDi~~~ 41 (321)
T PTZ00082 5 KRRKISLIGSGNIGGVMAYLIVL-KNLGDVVLFDIVKN 41 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHh-CCCCeEEEEeCCCc
Confidence 34579999999999999999998 675 8999998654
No 453
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=73.39 E-value=3.9 Score=41.17 Aligned_cols=32 Identities=31% Similarity=0.416 Sum_probs=27.8
Q ss_pred EEEECCCcHHHHHHHHHhcCCCC-eEEEEcCCCC
Q psy760 72 FIIVGAGPGGCTVANRLSEIPHW-KILLLEAGHY 104 (511)
Q Consensus 72 vIVVGgG~aGl~aA~~LAe~~G~-~VLVLEaG~~ 104 (511)
|.|||+|..|..+|..|+. .+. .|.++|....
T Consensus 1 I~IIGaG~vG~~ia~~la~-~~l~eV~L~Di~e~ 33 (300)
T cd01339 1 ISIIGAGNVGATLAQLLAL-KELGDVVLLDIVEG 33 (300)
T ss_pred CEEECCCHHHHHHHHHHHh-CCCcEEEEEeCCCc
Confidence 5799999999999999998 565 9999998753
No 454
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=73.27 E-value=3.2 Score=44.51 Aligned_cols=33 Identities=6% Similarity=0.202 Sum_probs=30.0
Q ss_pred ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
-.|+|||+|..|+=+|..|++ .+.+|.++.+++
T Consensus 205 k~VvVVG~G~Sg~diA~~L~~-~a~~V~l~~r~~ 237 (461)
T PLN02172 205 EVVVVIGNFASGADISRDIAK-VAKEVHIASRAS 237 (461)
T ss_pred CEEEEECCCcCHHHHHHHHHH-hCCeEEEEEeec
Confidence 369999999999999999999 788999999874
No 455
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=73.05 E-value=5.8 Score=31.74 Aligned_cols=33 Identities=24% Similarity=0.356 Sum_probs=28.5
Q ss_pred cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcC
Q psy760 69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEA 101 (511)
Q Consensus 69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEa 101 (511)
.-.++|+|.|..|..+|..|.+..+.+|.+.++
T Consensus 23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 346999999999999999999833678999988
No 456
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=72.87 E-value=4.5 Score=38.96 Aligned_cols=35 Identities=26% Similarity=0.316 Sum_probs=30.6
Q ss_pred CcccEEEECCCcHHHHHHHHHhcCCCC-eEEEEcCCC
Q psy760 68 LEYDFIIVGAGPGGCTVANRLSEIPHW-KILLLEAGH 103 (511)
Q Consensus 68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~-~VLVLEaG~ 103 (511)
...-|+|||.|..|+.+|..|++ .|. ++.|+|...
T Consensus 20 ~~~~VlivG~GglGs~va~~La~-~Gvg~i~lvD~D~ 55 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAA-AGVGKLGLVDDDV 55 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHH-cCCCEEEEEcCCE
Confidence 45789999999999999999999 787 788888764
No 457
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=72.25 E-value=4 Score=40.56 Aligned_cols=32 Identities=19% Similarity=0.146 Sum_probs=28.9
Q ss_pred cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
.|.|||.|..|.+.|..|++ .|.+|+++++.+
T Consensus 2 ~I~IIG~G~mG~sla~~L~~-~g~~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRS-LGHTVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHH-CCCEEEEEECCH
Confidence 37899999999999999999 799999999864
No 458
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=71.80 E-value=4.1 Score=41.08 Aligned_cols=33 Identities=18% Similarity=0.351 Sum_probs=29.9
Q ss_pred cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760 71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104 (511)
Q Consensus 71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~ 104 (511)
-|.|||+|..|.-.|..+|. .|+.|++.|....
T Consensus 5 kv~ViGaG~MG~gIA~~~A~-~G~~V~l~D~~~~ 37 (307)
T COG1250 5 KVAVIGAGVMGAGIAAVFAL-AGYDVVLKDISPE 37 (307)
T ss_pred EEEEEcccchhHHHHHHHhh-cCCceEEEeCCHH
Confidence 47899999999999999999 8999999998743
No 459
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=71.72 E-value=4.9 Score=37.87 Aligned_cols=35 Identities=23% Similarity=0.336 Sum_probs=30.7
Q ss_pred CcccEEEECCCcHHHHHHHHHhcCCCC-eEEEEcCCC
Q psy760 68 LEYDFIIVGAGPGGCTVANRLSEIPHW-KILLLEAGH 103 (511)
Q Consensus 68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~-~VLVLEaG~ 103 (511)
.+.-|+|||.|..|+.+|..|+. .|. ++.++|...
T Consensus 18 ~~s~VlviG~gglGsevak~L~~-~GVg~i~lvD~d~ 53 (198)
T cd01485 18 RSAKVLIIGAGALGAEIAKNLVL-AGIDSITIVDHRL 53 (198)
T ss_pred hhCcEEEECCCHHHHHHHHHHHH-cCCCEEEEEECCc
Confidence 45789999999999999999999 787 599998663
No 460
>PRK06223 malate dehydrogenase; Reviewed
Probab=71.70 E-value=4.8 Score=40.57 Aligned_cols=32 Identities=28% Similarity=0.447 Sum_probs=28.1
Q ss_pred cEEEECCCcHHHHHHHHHhcCCCC-eEEEEcCCC
Q psy760 71 DFIIVGAGPGGCTVANRLSEIPHW-KILLLEAGH 103 (511)
Q Consensus 71 DvIVVGgG~aGl~aA~~LAe~~G~-~VLVLEaG~ 103 (511)
.|.|||+|..|..+|..++. .|. .|.++|...
T Consensus 4 KI~VIGaG~vG~~ia~~la~-~~~~ev~L~D~~~ 36 (307)
T PRK06223 4 KISIIGAGNVGATLAHLLAL-KELGDVVLFDIVE 36 (307)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCCeEEEEEECCC
Confidence 58999999999999999998 554 999999844
No 461
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=71.56 E-value=5.2 Score=38.43 Aligned_cols=31 Identities=13% Similarity=0.315 Sum_probs=27.6
Q ss_pred cccEEEECCCcHHHHHHHHHhcCCCCeEEEEc
Q psy760 69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLE 100 (511)
Q Consensus 69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLE 100 (511)
.--|+|||||..++-=+..|.+ .|.+|+|+=
T Consensus 25 ~~~VLVVGGG~VA~RK~~~Ll~-~gA~VtVVa 55 (223)
T PRK05562 25 KIKVLIIGGGKAAFIKGKTFLK-KGCYVYILS 55 (223)
T ss_pred CCEEEEECCCHHHHHHHHHHHh-CCCEEEEEc
Confidence 4569999999999998989998 899999994
No 462
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=71.50 E-value=5.2 Score=32.38 Aligned_cols=32 Identities=22% Similarity=0.351 Sum_probs=28.0
Q ss_pred EEEECCCcHHHHHHHHHhcCCC---CeEEEE-cCCCC
Q psy760 72 FIIVGAGPGGCTVANRLSEIPH---WKILLL-EAGHY 104 (511)
Q Consensus 72 vIVVGgG~aGl~aA~~LAe~~G---~~VLVL-EaG~~ 104 (511)
+.|||+|-.|...|..|.+ .| .+|+++ ++.+.
T Consensus 2 I~iIG~G~mg~al~~~l~~-~g~~~~~v~~~~~r~~~ 37 (96)
T PF03807_consen 2 IGIIGAGNMGSALARGLLA-SGIKPHEVIIVSSRSPE 37 (96)
T ss_dssp EEEESTSHHHHHHHHHHHH-TTS-GGEEEEEEESSHH
T ss_pred EEEECCCHHHHHHHHHHHH-CCCCceeEEeeccCcHH
Confidence 6789999999999999999 78 899976 88754
No 463
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=71.24 E-value=5.3 Score=40.14 Aligned_cols=32 Identities=31% Similarity=0.542 Sum_probs=28.6
Q ss_pred EEEECCCcHHHHHHHHHhcCCCC-eEEEEcCCCC
Q psy760 72 FIIVGAGPGGCTVANRLSEIPHW-KILLLEAGHY 104 (511)
Q Consensus 72 vIVVGgG~aGl~aA~~LAe~~G~-~VLVLEaG~~ 104 (511)
|+|||+|.-|+.+|..|+. .|. +++++|.+..
T Consensus 2 VLIvGaGGLGs~vA~~La~-aGVg~ItlvD~D~V 34 (307)
T cd01486 2 CLLLGAGTLGCNVARNLLG-WGVRHITFVDSGKV 34 (307)
T ss_pred EEEECCCHHHHHHHHHHHH-cCCCeEEEECCCEe
Confidence 7999999999999999999 787 7999997753
No 464
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=71.10 E-value=4.3 Score=46.23 Aligned_cols=33 Identities=24% Similarity=0.305 Sum_probs=30.3
Q ss_pred cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760 71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104 (511)
Q Consensus 71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~ 104 (511)
-|.|||+|..|.-+|..++. .|++|.++|..+.
T Consensus 337 ~v~ViGaG~MG~gIA~~~a~-~G~~V~l~d~~~~ 369 (737)
T TIGR02441 337 TLAVLGAGLMGAGIAQVSVD-KGLKTVLKDATPA 369 (737)
T ss_pred EEEEECCCHhHHHHHHHHHh-CCCcEEEecCCHH
Confidence 48999999999999999999 8999999998754
No 465
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=71.10 E-value=5.3 Score=38.08 Aligned_cols=35 Identities=23% Similarity=0.233 Sum_probs=30.9
Q ss_pred CcccEEEECCCcHHHHHHHHHhcCCCC-eEEEEcCCC
Q psy760 68 LEYDFIIVGAGPGGCTVANRLSEIPHW-KILLLEAGH 103 (511)
Q Consensus 68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~-~VLVLEaG~ 103 (511)
....|+|||+|..|+.+|..|++ .|. ++.|+|...
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~-~Gvg~i~lvD~D~ 62 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALAR-SGVGNLKLVDFDV 62 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHH-cCCCeEEEEeCCE
Confidence 46789999999999999999999 787 599999764
No 466
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=70.92 E-value=5 Score=38.94 Aligned_cols=31 Identities=26% Similarity=0.543 Sum_probs=27.6
Q ss_pred EEEECCCcHHHHHHHHHhcCCCC-eEEEEcCCC
Q psy760 72 FIIVGAGPGGCTVANRLSEIPHW-KILLLEAGH 103 (511)
Q Consensus 72 vIVVGgG~aGl~aA~~LAe~~G~-~VLVLEaG~ 103 (511)
|+|||+|..|+.++..|+. .|. ++.|+|...
T Consensus 2 VlvvG~GGlG~eilk~La~-~Gvg~i~ivD~D~ 33 (234)
T cd01484 2 VLLVGAGGIGCELLKNLAL-MGFGQIHVIDMDT 33 (234)
T ss_pred EEEECCCHHHHHHHHHHHH-cCCCeEEEEeCCE
Confidence 7899999999999999999 676 788988764
No 467
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=70.78 E-value=4.5 Score=42.98 Aligned_cols=33 Identities=33% Similarity=0.501 Sum_probs=30.0
Q ss_pred cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760 71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104 (511)
Q Consensus 71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~ 104 (511)
.|+|+|+|..|..+|..|.+ .|.+|.++|+.+.
T Consensus 2 ~viIiG~G~ig~~~a~~L~~-~g~~v~vid~~~~ 34 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSG-ENNDVTVIDTDEE 34 (453)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCCcEEEEECCHH
Confidence 48999999999999999998 7999999998654
No 468
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=70.69 E-value=5 Score=40.19 Aligned_cols=34 Identities=18% Similarity=0.309 Sum_probs=30.5
Q ss_pred cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
.-.++|||.|..|..+|..|.. .|.+|.+.+|..
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~-~G~~V~v~~R~~ 184 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSA-LGARVFVGARSS 184 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHH-CCCEEEEEeCCH
Confidence 3469999999999999999998 799999999864
No 469
>PRK08223 hypothetical protein; Validated
Probab=70.54 E-value=5.1 Score=40.05 Aligned_cols=37 Identities=19% Similarity=0.152 Sum_probs=31.6
Q ss_pred CCcccEEEECCCcHHHHHHHHHhcCCCC-eEEEEcCCCC
Q psy760 67 LLEYDFIIVGAGPGGCTVANRLSEIPHW-KILLLEAGHY 104 (511)
Q Consensus 67 ~~~~DvIVVGgG~aGl~aA~~LAe~~G~-~VLVLEaG~~ 104 (511)
....-|+|||.|..|+.+|..||. .|. ++.|+|....
T Consensus 25 L~~s~VlIvG~GGLGs~va~~LA~-aGVG~i~lvD~D~V 62 (287)
T PRK08223 25 LRNSRVAIAGLGGVGGIHLLTLAR-LGIGKFTIADFDVF 62 (287)
T ss_pred HhcCCEEEECCCHHHHHHHHHHHH-hCCCeEEEEeCCCc
Confidence 356889999999999999999999 777 7888887643
No 470
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=70.52 E-value=6.1 Score=36.80 Aligned_cols=34 Identities=21% Similarity=0.326 Sum_probs=29.3
Q ss_pred cccEEEECC-CcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 69 EYDFIIVGA-GPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 69 ~~DvIVVGg-G~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
.-.++|+|+ |..|..+|..|++ .|.+|.++.|..
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~-~g~~V~l~~R~~ 62 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLAR-EGARVVLVGRDL 62 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHH-CCCEEEEEcCCH
Confidence 356999997 9999999999998 789999998763
No 471
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=70.46 E-value=5.3 Score=39.48 Aligned_cols=33 Identities=21% Similarity=0.321 Sum_probs=29.5
Q ss_pred ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
-.++|+|+|.+|..+|..|++ .|.+|.|+.|..
T Consensus 118 k~vliiGaGg~g~aia~~L~~-~g~~v~v~~R~~ 150 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLK-ADCNVIIANRTV 150 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHH-CCCEEEEEeCCH
Confidence 368999999999999999998 789999998864
No 472
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=69.92 E-value=5.2 Score=43.74 Aligned_cols=32 Identities=22% Similarity=0.378 Sum_probs=28.9
Q ss_pred ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCC
Q psy760 70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG 102 (511)
Q Consensus 70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG 102 (511)
--++|+|+|.+|.++|..|++ .|.+|.++.|.
T Consensus 380 k~vlIlGaGGagrAia~~L~~-~G~~V~i~nR~ 411 (529)
T PLN02520 380 KLFVVIGAGGAGKALAYGAKE-KGARVVIANRT 411 (529)
T ss_pred CEEEEECCcHHHHHHHHHHHH-CCCEEEEEcCC
Confidence 358999999999999999999 78899999875
No 473
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=69.58 E-value=5.8 Score=37.33 Aligned_cols=35 Identities=14% Similarity=0.230 Sum_probs=30.5
Q ss_pred CcccEEEECCCcHHHHHHHHHhcCCCC-eEEEEcCCC
Q psy760 68 LEYDFIIVGAGPGGCTVANRLSEIPHW-KILLLEAGH 103 (511)
Q Consensus 68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~-~VLVLEaG~ 103 (511)
...-|+|||.|..|+.+|..|+. .|. ++.++|...
T Consensus 20 ~~s~VlIiG~gglG~evak~La~-~GVg~i~lvD~d~ 55 (197)
T cd01492 20 RSARILLIGLKGLGAEIAKNLVL-SGIGSLTILDDRT 55 (197)
T ss_pred HhCcEEEEcCCHHHHHHHHHHHH-cCCCEEEEEECCc
Confidence 45789999999999999999999 787 588998664
No 474
>PRK08017 oxidoreductase; Provisional
Probab=69.57 E-value=5.9 Score=38.14 Aligned_cols=31 Identities=19% Similarity=0.229 Sum_probs=28.1
Q ss_pred EEEECC-CcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 72 FIIVGA-GPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 72 vIVVGg-G~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
++|+|+ |..|..+|..|++ .|.+|+++.+..
T Consensus 5 vlVtGasg~IG~~la~~l~~-~g~~v~~~~r~~ 36 (256)
T PRK08017 5 VLITGCSSGIGLEAALELKR-RGYRVLAACRKP 36 (256)
T ss_pred EEEECCCChHHHHHHHHHHH-CCCEEEEEeCCH
Confidence 899998 9999999999998 799999998764
No 475
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=69.50 E-value=5.8 Score=39.78 Aligned_cols=31 Identities=23% Similarity=0.576 Sum_probs=27.6
Q ss_pred EEEECCCcHHHHHHHHHhcCCCC-eEEEEcCCC
Q psy760 72 FIIVGAGPGGCTVANRLSEIPHW-KILLLEAGH 103 (511)
Q Consensus 72 vIVVGgG~aGl~aA~~LAe~~G~-~VLVLEaG~ 103 (511)
|+|||+|..|+-+|..|+. .|. ++.|+|-..
T Consensus 2 VlVVGaGGlG~eilknLal-~Gvg~I~IvD~D~ 33 (291)
T cd01488 2 ILVIGAGGLGCELLKNLAL-SGFRNIHVIDMDT 33 (291)
T ss_pred EEEECCCHHHHHHHHHHHH-cCCCeEEEECCCE
Confidence 7999999999999999999 777 788888664
No 476
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=69.44 E-value=4.1 Score=44.83 Aligned_cols=35 Identities=17% Similarity=0.303 Sum_probs=31.5
Q ss_pred cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760 69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104 (511)
Q Consensus 69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~ 104 (511)
+-.+||+|.|..|-.+|.+|.+ .|++|+++|+.+.
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~-~g~~vvvId~d~~ 451 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLA-AGIPLVVIETSRT 451 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHH-CCCCEEEEECCHH
Confidence 4679999999999999999999 7999999998753
No 477
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=69.41 E-value=5.4 Score=42.28 Aligned_cols=32 Identities=22% Similarity=0.410 Sum_probs=28.7
Q ss_pred EEEECCCcHHHHHHHHHhcCCCC------eEEEEcCCCC
Q psy760 72 FIIVGAGPGGCTVANRLSEIPHW------KILLLEAGHY 104 (511)
Q Consensus 72 vIVVGgG~aGl~aA~~LAe~~G~------~VLVLEaG~~ 104 (511)
|+|||+|..||-++..||. .|. ++.|+|....
T Consensus 2 VlvVGaGGlGcE~lKnLal-~Gv~~g~~G~I~IvD~D~I 39 (435)
T cd01490 2 VFLVGAGAIGCELLKNFAL-MGVGTGESGEITVTDMDNI 39 (435)
T ss_pred EEEECCCHHHHHHHHHHHH-cCCCcCCCCeEEEECCCCc
Confidence 7999999999999999999 787 8999997654
No 478
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=69.22 E-value=5.5 Score=44.06 Aligned_cols=35 Identities=29% Similarity=0.491 Sum_probs=30.6
Q ss_pred cccEEEECCCcHHHHHHHHHhcCCCC-eEEEEcCCCC
Q psy760 69 EYDFIIVGAGPGGCTVANRLSEIPHW-KILLLEAGHY 104 (511)
Q Consensus 69 ~~DvIVVGgG~aGl~aA~~LAe~~G~-~VLVLEaG~~ 104 (511)
..-|+|||+|.-|+.+|..|+. .|. +++++|.+..
T Consensus 338 ~~kVLIvGaGGLGs~VA~~La~-~GVg~ItlVD~D~V 373 (664)
T TIGR01381 338 QLKVLLLGAGTLGCNVARCLIG-WGVRHITFVDNGKV 373 (664)
T ss_pred cCeEEEECCcHHHHHHHHHHHH-cCCCeEEEEcCCEE
Confidence 4579999999999999999999 787 7899998754
No 479
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=69.09 E-value=5.1 Score=43.44 Aligned_cols=35 Identities=11% Similarity=0.156 Sum_probs=30.2
Q ss_pred cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760 69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104 (511)
Q Consensus 69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~ 104 (511)
.-.|+|+|+|.+|+.++..+.. .|.+|.++|..+.
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~-lGA~V~a~D~~~~ 199 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGS-LGAIVRAFDTRPE 199 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHH-CCCEEEEEeCCHH
Confidence 5679999999999999877776 7899999998754
No 480
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=69.06 E-value=6.1 Score=38.25 Aligned_cols=35 Identities=23% Similarity=0.266 Sum_probs=30.6
Q ss_pred CcccEEEECCCcHHHHHHHHHhcCCCC-eEEEEcCCC
Q psy760 68 LEYDFIIVGAGPGGCTVANRLSEIPHW-KILLLEAGH 103 (511)
Q Consensus 68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~-~VLVLEaG~ 103 (511)
...-|+|||.|..|+.+|..|++ .|. +++|+|...
T Consensus 10 ~~~~VlVvG~GGvGs~va~~Lar-~GVg~i~LvD~D~ 45 (231)
T cd00755 10 RNAHVAVVGLGGVGSWAAEALAR-SGVGKLTLIDFDV 45 (231)
T ss_pred hCCCEEEECCCHHHHHHHHHHHH-cCCCEEEEECCCE
Confidence 35679999999999999999999 787 899998764
No 481
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=68.99 E-value=5 Score=40.04 Aligned_cols=31 Identities=16% Similarity=0.318 Sum_probs=28.7
Q ss_pred EEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 72 FIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 72 vIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
|-|||.|..|...|.+|++ .|++|.+.++.+
T Consensus 2 IgvIG~G~mG~~iA~~l~~-~G~~V~~~dr~~ 32 (291)
T TIGR01505 2 VGFIGLGIMGSPMSINLAK-AGYQLHVTTIGP 32 (291)
T ss_pred EEEEEecHHHHHHHHHHHH-CCCeEEEEcCCH
Confidence 6799999999999999999 799999999875
No 482
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=68.49 E-value=6.3 Score=41.46 Aligned_cols=34 Identities=18% Similarity=0.202 Sum_probs=30.4
Q ss_pred cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
.-.++|||.|..|..+|..|.. .|.+|+++|..+
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak~-~Ga~ViV~d~dp 228 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRARG-MGARVIVTEVDP 228 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHhh-CcCEEEEEeCCh
Confidence 3469999999999999999987 799999999765
No 483
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=68.09 E-value=6.7 Score=35.52 Aligned_cols=32 Identities=16% Similarity=0.377 Sum_probs=27.4
Q ss_pred cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
.|-|||-|..|...|.+|++ .|++|.+.++.+
T Consensus 3 ~Ig~IGlG~mG~~~a~~L~~-~g~~v~~~d~~~ 34 (163)
T PF03446_consen 3 KIGFIGLGNMGSAMARNLAK-AGYEVTVYDRSP 34 (163)
T ss_dssp EEEEE--SHHHHHHHHHHHH-TTTEEEEEESSH
T ss_pred EEEEEchHHHHHHHHHHHHh-cCCeEEeeccch
Confidence 47899999999999999999 899999999874
No 484
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=67.30 E-value=6.9 Score=40.72 Aligned_cols=50 Identities=14% Similarity=0.056 Sum_probs=33.4
Q ss_pred hHhhhhCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEEeCcEEEEccCC
Q psy760 272 IDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGA 327 (511)
Q Consensus 272 L~~~~~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~A~k~VILAAGa 327 (511)
+....++.|++|+++++|++|..++ ++++.+ +..+++ ++.|+ .||+|+-.
T Consensus 203 l~~~l~~~g~~i~~~~~V~~i~~~~--~~~~~~-~~~~g~--~~~~d-~vi~a~p~ 252 (419)
T TIGR03467 203 ARRWLDSRGGEVRLGTRVRSIEANA--GGIRAL-VLSGGE--TLPAD-AVVLAVPP 252 (419)
T ss_pred HHHHHHHcCCEEEcCCeeeEEEEcC--CcceEE-EecCCc--cccCC-EEEEcCCH
Confidence 3333446689999999999999876 333322 223343 57887 58887664
No 485
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=67.29 E-value=5.7 Score=45.11 Aligned_cols=33 Identities=12% Similarity=0.146 Sum_probs=29.6
Q ss_pred cEEEECCCcHHHHHHHHHh-cCCCCeEEEEcCCCC
Q psy760 71 DFIIVGAGPGGCTVANRLS-EIPHWKILLLEAGHY 104 (511)
Q Consensus 71 DvIVVGgG~aGl~aA~~LA-e~~G~~VLVLEaG~~ 104 (511)
-|.|||+|..|...|..++ . .|+.|.++|..+.
T Consensus 311 ~v~ViGaG~mG~giA~~~a~~-~G~~V~l~d~~~~ 344 (708)
T PRK11154 311 KVGVLGGGLMGGGIAYVTATK-AGLPVRIKDINPQ 344 (708)
T ss_pred EEEEECCchhhHHHHHHHHHH-cCCeEEEEeCCHH
Confidence 4899999999999999999 6 8999999998643
No 486
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=67.05 E-value=7.1 Score=41.57 Aligned_cols=33 Identities=15% Similarity=0.242 Sum_probs=29.8
Q ss_pred cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760 71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104 (511)
Q Consensus 71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~ 104 (511)
-++|+|.|.+|..+|..|++ .|.+|.+.|..+.
T Consensus 7 ~~~v~G~g~~G~~~a~~l~~-~g~~v~~~d~~~~ 39 (445)
T PRK04308 7 KILVAGLGGTGISMIAYLRK-NGAEVAAYDAELK 39 (445)
T ss_pred EEEEECCCHHHHHHHHHHHH-CCCEEEEEeCCCC
Confidence 48999999999999999998 8999999997654
No 487
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=67.01 E-value=6.7 Score=41.42 Aligned_cols=54 Identities=24% Similarity=0.246 Sum_probs=35.9
Q ss_pred hCCCcEEEeCceEEEEEEcCCCCcEEEEEEEECCeEEEEE--eCcEEEEccCCCCcHHHHHhcC
Q psy760 277 KRCNLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKIL--ARKEVILSAGAFNSPKLLMLSG 338 (511)
Q Consensus 277 ~r~gv~v~~~t~V~~I~~d~~~~ra~GV~~~~~g~~~~v~--A~k~VILAAGa~~SP~LL~~SG 338 (511)
++.|++++.++.|++|..++. .|.+..++...++. ++ .||||+|+ +|..+...|
T Consensus 55 ~~~gv~~~~~~~V~~id~~~~-----~v~~~~~~~~~~~~~~yd-~lIiATG~--~p~~~~i~G 110 (427)
T TIGR03385 55 KKRGIDVKTNHEVIEVNDERQ-----TVVVRNNKTNETYEESYD-YLILSPGA--SPIVPNIEG 110 (427)
T ss_pred HhcCCeEEecCEEEEEECCCC-----EEEEEECCCCCEEecCCC-EEEECCCC--CCCCCCCCC
Confidence 567999999999999976542 35554432112455 87 69999998 665544334
No 488
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=66.60 E-value=7 Score=39.30 Aligned_cols=34 Identities=18% Similarity=0.233 Sum_probs=30.7
Q ss_pred cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
...++|||.|.+|..+|..|.. .|.+|.++++.+
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~-~Ga~V~v~~r~~ 185 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKA-LGANVTVGARKS 185 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHH-CCCEEEEEECCH
Confidence 4579999999999999999998 799999998874
No 489
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=66.56 E-value=6.4 Score=39.90 Aligned_cols=32 Identities=25% Similarity=0.528 Sum_probs=28.2
Q ss_pred EEEECCCcHHHHHHHHHhcCCCC-eEEEEcCCCC
Q psy760 72 FIIVGAGPGGCTVANRLSEIPHW-KILLLEAGHY 104 (511)
Q Consensus 72 vIVVGgG~aGl~aA~~LAe~~G~-~VLVLEaG~~ 104 (511)
|+|||+|..|+-+|..|+. .|. ++.|+|....
T Consensus 2 VlIVGaGGlG~EiaKnLal-~Gvg~ItIvD~D~V 34 (312)
T cd01489 2 VLVVGAGGIGCELLKNLVL-TGFGEIHIIDLDTI 34 (312)
T ss_pred EEEECCCHHHHHHHHHHHH-hcCCeEEEEcCCCc
Confidence 7999999999999999999 676 7999987643
No 490
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=66.07 E-value=7.7 Score=41.08 Aligned_cols=35 Identities=20% Similarity=0.239 Sum_probs=30.6
Q ss_pred cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760 69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104 (511)
Q Consensus 69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~ 104 (511)
.--++|||.|..|..+|..|.. .|.+|++.|..+.
T Consensus 212 Gk~VlViG~G~IG~~vA~~lr~-~Ga~ViV~d~dp~ 246 (425)
T PRK05476 212 GKVVVVAGYGDVGKGCAQRLRG-LGARVIVTEVDPI 246 (425)
T ss_pred CCEEEEECCCHHHHHHHHHHHh-CCCEEEEEcCCch
Confidence 3459999999999999999988 7999999998653
No 491
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=65.90 E-value=7.3 Score=38.74 Aligned_cols=34 Identities=21% Similarity=0.194 Sum_probs=29.9
Q ss_pred ccEEEECCCcHHHHHHHHHhcCCC-CeEEEEcCCCC
Q psy760 70 YDFIIVGAGPGGCTVANRLSEIPH-WKILLLEAGHY 104 (511)
Q Consensus 70 ~DvIVVGgG~aGl~aA~~LAe~~G-~~VLVLEaG~~ 104 (511)
-.++|+|+|-+|..+|..|++ .| .+|.|+.|...
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~-~g~~~V~v~~R~~~ 158 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLD-LGVAEITIVNRTVE 158 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHH-cCCCEEEEEeCCHH
Confidence 468999999999999999998 78 79999988643
No 492
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=65.83 E-value=6.5 Score=41.17 Aligned_cols=31 Identities=16% Similarity=0.216 Sum_probs=27.3
Q ss_pred EEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760 72 FIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104 (511)
Q Consensus 72 vIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~ 104 (511)
|.|||.|..|+.+|..+|. |++|+++|+...
T Consensus 3 I~VIGlGyvGl~~A~~lA~--G~~VigvD~d~~ 33 (388)
T PRK15057 3 ITISGTGYVGLSNGLLIAQ--NHEVVALDILPS 33 (388)
T ss_pred EEEECCCHHHHHHHHHHHh--CCcEEEEECCHH
Confidence 7899999999999987774 799999998754
No 493
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=65.75 E-value=6.6 Score=34.66 Aligned_cols=32 Identities=16% Similarity=0.261 Sum_probs=26.3
Q ss_pred EEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760 72 FIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104 (511)
Q Consensus 72 vIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~ 104 (511)
++|+|+|..+..+|.-++. -|++|+|+|-.+.
T Consensus 1 L~I~GaG~va~al~~la~~-lg~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAAL-LGFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHH-CTEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHh-CCCEEEEEcCCcc
Confidence 5899999999999987777 8999999997643
No 494
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=65.72 E-value=7.4 Score=40.57 Aligned_cols=35 Identities=23% Similarity=0.311 Sum_probs=30.8
Q ss_pred CcccEEEECCCcHHHHHHHHHhcCCCC-eEEEEcCCC
Q psy760 68 LEYDFIIVGAGPGGCTVANRLSEIPHW-KILLLEAGH 103 (511)
Q Consensus 68 ~~~DvIVVGgG~aGl~aA~~LAe~~G~-~VLVLEaG~ 103 (511)
...-|+|||+|..|+.+|..|++ .|. ++.|+|...
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~-~Gvg~i~lvD~d~ 169 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAA-AGVGTLGIVDHDV 169 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHH-cCCCeEEEEeCCE
Confidence 45679999999999999999999 787 799999764
No 495
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=65.54 E-value=7.3 Score=39.49 Aligned_cols=36 Identities=22% Similarity=0.406 Sum_probs=33.8
Q ss_pred cccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCC
Q psy760 69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 105 (511)
Q Consensus 69 ~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~ 105 (511)
+|||+|||||.||+++|++|++ .|+++.|+-+|...
T Consensus 2 ~fDv~IIGGGLAGltc~l~l~~-~Gk~c~iv~~gQsA 37 (421)
T COG3075 2 NFDVAIIGGGLAGLTCGLALQQ-AGKRCAIVNRGQSA 37 (421)
T ss_pred cccEEEEcCcHHHHHHHHHHHh-cCCcEEEEeCChhh
Confidence 5999999999999999999999 89999999999765
No 496
>PRK07326 short chain dehydrogenase; Provisional
Probab=65.43 E-value=7.8 Score=36.78 Aligned_cols=32 Identities=19% Similarity=0.263 Sum_probs=27.8
Q ss_pred cEEEECC-CcHHHHHHHHHhcCCCCeEEEEcCCC
Q psy760 71 DFIIVGA-GPGGCTVANRLSEIPHWKILLLEAGH 103 (511)
Q Consensus 71 DvIVVGg-G~aGl~aA~~LAe~~G~~VLVLEaG~ 103 (511)
-++|+|+ |..|..+|.+|++ .|.+|+++.|.+
T Consensus 8 ~ilItGatg~iG~~la~~l~~-~g~~V~~~~r~~ 40 (237)
T PRK07326 8 VALITGGSKGIGFAIAEALLA-EGYKVAITARDQ 40 (237)
T ss_pred EEEEECCCCcHHHHHHHHHHH-CCCEEEEeeCCH
Confidence 3788885 9999999999999 799999998754
No 497
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=65.37 E-value=7.2 Score=39.14 Aligned_cols=33 Identities=15% Similarity=0.324 Sum_probs=29.8
Q ss_pred cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760 71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104 (511)
Q Consensus 71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~ 104 (511)
.+-|||.|..|...|.+|++ .|++|.+.++.+.
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~-~G~~V~v~d~~~~ 35 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLK-QGHQLQVFDVNPQ 35 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHH-CCCeEEEEcCCHH
Confidence 48899999999999999999 7999999998753
No 498
>KOG2304|consensus
Probab=65.31 E-value=6.3 Score=37.74 Aligned_cols=40 Identities=23% Similarity=0.291 Sum_probs=33.4
Q ss_pred ccCCcccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCCC
Q psy760 65 DLLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 105 (511)
Q Consensus 65 ~~~~~~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~~ 105 (511)
.+..--.|.|||+|..|.-+|--.|. .|+.|.|+++....
T Consensus 7 ~~~~~~~V~ivGaG~MGSGIAQv~a~-sg~~V~l~d~~~~a 46 (298)
T KOG2304|consen 7 NMAEIKNVAIVGAGQMGSGIAQVAAT-SGLNVWLVDANEDA 46 (298)
T ss_pred ccccccceEEEcccccchhHHHHHHh-cCCceEEecCCHHH
Confidence 34445679999999999999988887 89999999998643
No 499
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=65.10 E-value=7.1 Score=41.49 Aligned_cols=34 Identities=26% Similarity=0.371 Sum_probs=30.6
Q ss_pred ccEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760 70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104 (511)
Q Consensus 70 ~DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~ 104 (511)
-.+||+|+|..|..+|..|.+ .|.+|+++|+.+.
T Consensus 232 ~~iiIiG~G~~g~~l~~~L~~-~~~~v~vid~~~~ 265 (453)
T PRK09496 232 KRVMIVGGGNIGYYLAKLLEK-EGYSVKLIERDPE 265 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHh-CCCeEEEEECCHH
Confidence 359999999999999999998 7999999998754
No 500
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=65.05 E-value=6.9 Score=44.34 Aligned_cols=34 Identities=15% Similarity=0.129 Sum_probs=29.4
Q ss_pred cEEEECCCcHHHHHHHHHhcCCCCeEEEEcCCCC
Q psy760 71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104 (511)
Q Consensus 71 DvIVVGgG~aGl~aA~~LAe~~G~~VLVLEaG~~ 104 (511)
-|.|||+|..|...|..+|...|+.|.++|..+.
T Consensus 306 ~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~ 339 (699)
T TIGR02440 306 KVGILGGGLMGGGIASVTATKAGIPVRIKDINPQ 339 (699)
T ss_pred EEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHH
Confidence 4899999999999999988327999999998754
Done!