RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy760
(511 letters)
>gnl|CDD|235000 PRK02106, PRK02106, choline dehydrogenase; Validated.
Length = 560
Score = 311 bits (799), Expect = e-100
Identities = 143/321 (44%), Positives = 188/321 (58%), Gaps = 19/321 (5%)
Query: 69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG---HYFNYLVDIPV-LNTNLILSPLN 124
EYD+II+GAG GC +ANRLSE P +LLLEAG + +++ + +P L L N
Sbjct: 5 EYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGPDYRWDFFIQMPAALAFPLQGKRYN 64
Query: 125 WGYKTEKEDCRACLGLKGQRCPWPSGKGVGGTSLINTMLYTRGNKRNYDDWAKL-GNYGW 183
W Y+TE E + +R P GK +GG+S IN M+Y RGN +YD+WA+L G GW
Sbjct: 65 WAYETEPEP-----HMNNRRMECPRGKVLGGSSSINGMVYIRGNAMDYDNWAELPGLEGW 119
Query: 184 SYNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDY-TEYNTPMLDAFLQAGMEAGYPLV 242
SY + LPYFKKAE E Y G G + V P+ AF++AG++AGYP
Sbjct: 120 SYADCLPYFKKAETRDGGE---DDYRGGDGPLSVTRGKPGTNPLFQAFVEAGVQAGYPRT 176
Query: 243 -DYNGKTQTGFARAQATLHKRSRRSSAKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKA 301
D NG Q GF T+ R S+A+ Y+DP KR NLT+ + +IL + K+A
Sbjct: 177 DDLNGYQQEGFGPMDRTVTNGRRWSAARAYLDPALKRPNLTIVTHALTDRILFEG--KRA 234
Query: 302 CGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIPVIKNLR-VGE 360
GV G AR+EVILSAGA NSP+LL LSGIGP EHL +L IPV+ +L VGE
Sbjct: 235 VGVEYERGGGRETARARREVILSAGAINSPQLLQLSGIGPAEHLKELGIPVVHDLPGVGE 294
Query: 361 NLQEHLAMAGLTFLVNQPIGL 381
NLQ+HL + + + QP+ L
Sbjct: 295 NLQDHLEVY-IQYECKQPVSL 314
>gnl|CDD|225186 COG2303, BetA, Choline dehydrogenase and related flavoproteins
[Amino acid transport and metabolism].
Length = 542
Score = 256 bits (656), Expect = 5e-79
Identities = 126/329 (38%), Positives = 185/329 (56%), Gaps = 19/329 (5%)
Query: 65 DLLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG-HYFNYLVDIPVLNTNLILSP- 122
++ +EYD++IVG+G G +A RLS+ +L+LEAG L+ +P L+ P
Sbjct: 3 EMKMEYDYVIVGSGSAGSVLAARLSDAGL-SVLVLEAGGPDRRPLIQMPAAYAFLMNGPR 61
Query: 123 LNWGYKTEKEDCRACLGLKGQRCPWPSGKGVGGTSLINTMLYTRGNKRNYDDWAKL-GNY 181
+WG++TE E L+G+ WP GK +GG+S IN M+Y RG+ ++D WA+ G
Sbjct: 62 YDWGFRTEPEP-----HLRGRELAWPRGKVLGGSSSINGMVYVRGHPEDFDAWAQESGAP 116
Query: 182 GWSYNEVLPYFKKAERIQISELQNSS-YHGTQGFIGVDYTEYNTPMLDAFLQAGMEAGYP 240
GW Y++VLPYFK+AE + Q+ +HG G + V P+ AF++AG + G+P
Sbjct: 117 GWPYDDVLPYFKRAEDLLGVGGQDLRTWHGGGGPLPVSPPRSPNPIARAFIEAGEQLGFP 176
Query: 241 LV-DYNGKTQTGFARAQATLHKRSRRSSAKDYIDPIKKRCNLTVKDSSFVKKILIDPVTK 299
D NG Q GF T+ R S+A+ Y+ P KR NLT+ + V++IL++
Sbjct: 177 TTPDPNGADQEGFGPYCVTICNGRRWSAARAYLKPALKRPNLTLLTGARVRRILLEG--D 234
Query: 300 KACGVLATIK--GIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIP-VIKNL 356
+A GV I G +A +EV+L+AGA NSPKLL+LSGIGP +HL + I V +
Sbjct: 235 RAVGVEVEIGDGGTIETAVAAREVVLAAGAINSPKLLLLSGIGPADHLLEHGIDVVGRLP 294
Query: 357 RVGENLQEHL---AMAGLTFLVNQPIGLL 382
VG+NLQ+HL T N + L
Sbjct: 295 GVGQNLQDHLEIYVAFEATEPTNDSVLSL 323
>gnl|CDD|233581 TIGR01810, betA, choline dehydrogenase. Choline dehydrogenase
catalyzes the conversion of exogenously supplied choline
into the intermediate glycine betaine aldehyde, as part
of a two-step oxidative reaction leading to the
formation of osmoprotectant betaine. This enzymatic
system can be found in both gram-positive and
gram-negative bacteria. As in Escherichia coli ,
Staphylococcus xylosus , and Sinorhizobium meliloti,
this enzyme is found associated in a transciptionally
co-induced gene cluster with betaine aldehyde
dehydrogenase, the second catalytic enzyme in this
reaction. Other gram-positive organisms have been shown
to employ a different enzymatic system, utlizing a
soluable choline oxidase or type III alcohol
dehydrogenase instead of choline dehydrogenase. This
enzyme is a member of the GMC oxidoreductase family
(pfam00732 and pfam05199), sharing a common
evoluntionary origin and enzymatic reaction with alcohol
dehydrogenase. Outgrouping from this model, Caulobacter
crescentus shares sequence homology with choline
dehydrogenase, yet other genes participating in this
enzymatic reaction have not currently been identified
[Cellular processes, Adaptations to atypical
conditions].
Length = 532
Score = 250 bits (640), Expect = 1e-76
Identities = 128/318 (40%), Positives = 170/318 (53%), Gaps = 18/318 (5%)
Query: 71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAG---HYFNYLVDIPV-LNTNLILSPLNWG 126
D+II+G G G +A RLSE +L+LEAG + ++ L+ +P L NW
Sbjct: 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGSDYPWDLLIQMPAALAYPAGNKRYNWI 60
Query: 127 YKTEKEDCRACLGLKGQRCPWPSGKGVGGTSLINTMLYTRGNKRNYDDWAK-LGNYGWSY 185
Y+TE E + +R GK +GG+S IN M+Y RGN +Y+ WAK G W Y
Sbjct: 61 YETEPEP-----HMNNRRVGHARGKVLGGSSSINGMIYQRGNPMDYEKWAKPEGMESWDY 115
Query: 186 NEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTEYNTPMLDAFLQAGMEAGYPLV-DY 244
+ LPY+K+ E E Y G G I V + P+ AF++AG+EAGY D
Sbjct: 116 ADCLPYYKRLETTFGGE---KPYRGHDGPIKVRRGPADNPLFQAFIEAGVEAGYNKTPDV 172
Query: 245 NGKTQTGFARAQATLHKRSRRSSAKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGV 304
NG Q GF +T+H R S+A+ Y+ P KR NL V+ +FV KI + +A GV
Sbjct: 173 NGFRQEGFGPMDSTVHNGRRVSAARAYLHPAMKRPNLEVQTRAFVTKINFE--GNRATGV 230
Query: 305 LATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIPVIKNLR-VGENLQ 363
G A KEVILSAGA NSP+LL LSGIG EHL +L I +L VGENLQ
Sbjct: 231 EFKKGGRKEHTEANKEVILSAGAINSPQLLQLSGIGDAEHLRELGIEPRIHLPGVGENLQ 290
Query: 364 EHLAMAGLTFLVNQPIGL 381
+HL + + QP+ L
Sbjct: 291 DHLEVY-VQHACKQPVSL 307
>gnl|CDD|216089 pfam00732, GMC_oxred_N, GMC oxidoreductase. This family of
proteins bind FAD as a cofactor.
Length = 218
Score = 160 bits (408), Expect = 2e-46
Identities = 74/234 (31%), Positives = 104/234 (44%), Gaps = 39/234 (16%)
Query: 142 GQRCPWPSGKGVGGTSLINTMLYTRGNKRNYDDWAKL-GNYGWSYNEVLPYFKKAERIQI 200
G+R P+G VGG S +N R D+WA G GW Y++ LPY K E
Sbjct: 16 GRRMILPAGSTVGGGSSVNWSACIRTPAAVLDEWASEFGLEGWGYDDYLPYMDKVE---- 71
Query: 201 SELQNSSYHGTQGFIGVDYT-EYNTPMLDAFLQAGMEAGYPLV----DYNGKTQTGFARA 255
G +GV +P+ A L+A E GYP+ + NG GF
Sbjct: 72 ------------GPLGVTTKGIEESPLNQALLKAAEELGYPVEAVPRNSNGCHYCGFCGL 119
Query: 256 QATLHKRSRRSSAKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKACGVLATIK--GIDH 313
+ S+A+ ++ P +R NL + + +KI+I +A GV A GI
Sbjct: 120 GCPTGAKQ--STARTWLRPALER-NLRILTGAKAEKIIILGRGGRAVGVEARDGGGGIKR 176
Query: 314 KILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIPVIKNLRVGENLQEHLA 367
I A KEV+++AGA N+P LL+ SG+G H VG+NLQ H
Sbjct: 177 LITAAKEVVVAAGALNTPPLLLRSGLGKNPH------------PVGKNLQLHPV 218
>gnl|CDD|234421 TIGR03970, Rv0697, dehydrogenase, Rv0697 family. This model
describes a set of dehydrogenases belonging to the
glucose-methanol-choline oxidoreductase (GMC
oxidoreductase) family. Members of the present family
are restricted to Actinobacterial genome contexts
containing also members of families TIGR03962 and
TIGR03969 (the mycofactocin system), and are proposed to
be uniform in function.
Length = 487
Score = 161 bits (409), Expect = 6e-44
Identities = 100/306 (32%), Positives = 143/306 (46%), Gaps = 27/306 (8%)
Query: 71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLVDIPVLNTN-LIL-----SPLN 124
D ++VG G GC VA RLSE P + +LEAG + +P T+ L L SP+
Sbjct: 2 DVLVVGGGSAGCVVAARLSEDPSCTVTVLEAGPGYRDPSRLPAQLTDGLRLPIGPASPVV 61
Query: 125 WGYKTEKEDCRACLGLKGQRCPWPSGKGVGGTSLINTMLYTRGNKRNYDDWAKLGNYGWS 184
W Y E D + G+ +GG+ +N + R ++D W G WS
Sbjct: 62 WRYGVELTD------GPRRASAIVRGRVLGGSGAVNGGYFCRALPADFDAWPIPG---WS 112
Query: 185 YNEVLPYFKKAERIQISELQ-NSSYHGTQGFIGVDYTEYNTPMLDAFLQAGMEAGYP-LV 242
+++VLP+F+ E +L + HGT G I V T + AF+ A + AG+ +
Sbjct: 113 WDDVLPHFRAIET----DLDFDGPLHGTAGPIPVRRTAELDGISAAFVAAALGAGFGWIA 168
Query: 243 DYNGKT---QTGFARAQATLHKRSRRSSAKDYIDPIKKRCNLTVKDSSFVKKILIDPVTK 299
D NG TG + R S+A Y+ P KR NLTV+ + V +IL
Sbjct: 169 DLNGSGPDAPTGVGAVPLNVDGGRRVSTAVAYLLPALKRPNLTVEADTRVVRILFS--GT 226
Query: 300 KACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIPVIKNLRVG 359
+A GV + + L V+L AGA S LL+LSGIGP E L I V+ +L VG
Sbjct: 227 RAVGVEV-LGDGGPRTLRADRVVLCAGAVESAHLLLLSGIGPAEQLRAAGIAVVLDLPVG 285
Query: 360 ENLQEH 365
+ +H
Sbjct: 286 SDFVDH 291
>gnl|CDD|215420 PLN02785, PLN02785, Protein HOTHEAD.
Length = 587
Score = 79.1 bits (195), Expect = 1e-15
Identities = 92/372 (24%), Positives = 144/372 (38%), Gaps = 76/372 (20%)
Query: 16 MLYTIFTLVSYLSSTSLSINVNEFDYAVKSYIEDGIFEQLEYKSSNKDQDLLLEYDFIIV 75
L+ L+ +S+S + Y + F SS+ D YD+I+V
Sbjct: 4 KLFLFLLLLCLPTSSSSQGKSHFTPYRYPFIDKASSFSSSSSSSSSSGGDS--AYDYIVV 61
Query: 76 GAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLVDIPVLNTNLILSPLNWGYKTEKEDCR 135
G G GC +A LS+ ++ +LLLE G +P N N+ E+
Sbjct: 62 GGGTAGCPLAATLSQ--NFSVLLLERG-------GVPFGNANVSFL----------ENFH 102
Query: 136 ACLGLKGQRCP---WPSGKGV--------GGTSLINTMLYTRGNKRNYDDWAKLGNYGWS 184
L + S GV GG + IN Y+R + R GW
Sbjct: 103 IGLADTSPTSASQAFISTDGVINARARVLGGGTCINAGFYSRASTRFIQK------AGWD 156
Query: 185 YNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDY---TEYNTPMLDAFLQAGMEAGYPL 241
++L N SY + I V + + + D+ L+ G+
Sbjct: 157 ----------------AKLVNESYPWVERQI-VHWPKVAPWQAALRDSLLEVGVSP---- 195
Query: 242 VDYNGKTQTGF--ARAQATLHKRS-RRSSAKDYIDPIKKRCNLTVKDSSFVKKILIDPVT 298
+NG T + T+ RR +A + + L V + V+KI+ D
Sbjct: 196 --FNGFTYDHVYGTKVGGTIFDEFGRRHTAAELLAAGNPN-KLRVLLHATVQKIVFDTSG 252
Query: 299 K--KACGVLATIK--GIDHKILARK---EVILSAGAFNSPKLLMLSGIGPQEHLNDLNIP 351
K +A GV+ + L+ E+ILSAGA SP++L+LSGIGP++ L IP
Sbjct: 253 KRPRATGVIFKDENGNQHQAFLSNNKGSEIILSAGAIGSPQMLLLSGIGPKKELKKHKIP 312
Query: 352 VI-KNLRVGENL 362
V+ N VG+ +
Sbjct: 313 VVLHNEHVGKGM 324
>gnl|CDD|233671 TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hydroxylase,
UbiH/UbiF/VisC/COQ6 family. This model represents a
family of FAD-dependent hydroxylases (monooxygenases)
which are all believed to act in the aerobic ubiquinone
biosynthesis pathway. A separate set of hydroxylases, as
yet undiscovered, are believed to be active under
anaerobic conditions. In E. coli three enzyme activities
have been described, UbiB (which acts first at position
6, see TIGR01982), UbiH (which acts at position 4,) and
UbiF (which acts at position 5,). UbiH and UbiF are
similar to one another and form the basis of this
subfamily. Interestingly, E. coli contains another
hydroxylase gene, called visC, that is highly similar to
UbiF, adjacent to UbiH and, when mutated, results in a
phenotype similar to that of UbiH (which has also been
named visB). Several other species appear to have three
homologs in this family, although they assort themselves
differently on phylogenetic trees (e.g. Xylella and
Mesorhizobium) making it difficult to ascribe a specific
activity to each one. Eukaryotes appear to have only a
single homolog in this subfamily (COQ6,) which
complements UbiH, but also possess a non-orthologous
gene, COQ7 which complements UbiF [Biosynthesis of
cofactors, prosthetic groups, and carriers, Menaquinone
and ubiquinone].
Length = 387
Score = 41.8 bits (99), Expect = 6e-04
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAG 102
D +IVG GP G +A L+ K+ L+EA
Sbjct: 1 DIVIVGGGPVGLALALALARSGGLKVALIEAT 32
>gnl|CDD|223652 COG0579, COG0579, Predicted dehydrogenase [General function
prediction only].
Length = 429
Score = 40.3 bits (95), Expect = 0.002
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 69 EYDFIIVGAGPGGCTVANRLSEI-PHWKILLLE 100
+YD +I+G G G A LSE P + LLE
Sbjct: 3 DYDVVIIGGGIMGAATAYELSEYEPDLSVALLE 35
>gnl|CDD|205628 pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain.
Length = 66
Score = 35.5 bits (83), Expect = 0.004
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 74 IVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 105
IVGAG G A L++ +L+LE
Sbjct: 1 IVGAGLSGLVAAYLLAKR-GKDVLVLEKRDRI 31
>gnl|CDD|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production
and conversion].
Length = 396
Score = 38.6 bits (90), Expect = 0.006
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
Query: 69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLVDIPVLNTNLI 119
EYD +IVGAGP G + A RL++ +L+LE G +
Sbjct: 3 EYDVVIVGAGPAGSSAARRLAKA-GLDVLVLEKGSEPGA----KPCCGGGL 48
>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex,
dihydrolipoamide dehydrogenase (E3) component, and
related enzymes [Energy production and conversion].
Length = 454
Score = 38.7 bits (91), Expect = 0.007
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 105
EYD +++GAGP G A R +++ K+ L+E G
Sbjct: 4 EYDVVVIGAGPAGYVAAIRAAQL-GLKVALVEKGERL 39
>gnl|CDD|233693 TIGR02032, GG-red-SF, geranylgeranyl reductase family. This model
represents a subfamily which includes geranylgeranyl
reductases involved in chlorophyll and
bacteriochlorophyll biosynthesis as well as other
related enzymes which may also act on geranylgeranyl
groups or related substrates [Biosynthesis of cofactors,
prosthetic groups, and carriers, Chlorophyll and
bacteriochlorphyll].
Length = 295
Score = 38.1 bits (89), Expect = 0.009
Identities = 15/31 (48%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLE 100
YD ++VGAGP G + A RL++ ++LLLE
Sbjct: 1 YDVVVVGAGPAGASAAYRLADKGL-RVLLLE 30
>gnl|CDD|223727 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related
FAD-dependent oxidoreductases [Coenzyme metabolism /
Energy production and conversion].
Length = 387
Score = 38.1 bits (89), Expect = 0.009
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEA 101
D IVGAGP G +A L+ + LLE
Sbjct: 3 LDVAIVGAGPAGLALALALARAGL-DVTLLER 33
>gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated.
Length = 460
Score = 36.7 bits (86), Expect = 0.025
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104
+YD I++GAGP G A R +++ K+ L+E G
Sbjct: 2 EKYDVIVIGAGPAGYVAARRAAKLGK-KVALIEKGPL 37
>gnl|CDD|233669 TIGR01984, UbiH, 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This
model represents the FAD-dependent monoxygenase
responsible for the second hydroxylation step in the
aerobic ubiquinone bioynthetic pathway. The scope of
this model is limited to the proteobacteria. This family
is closely related to the UbiF hydroxylase which
catalyzes the final hydroxylation step. The enzyme has
also been named VisB due to a mutant VISible light
sensitive phenotype [Biosynthesis of cofactors,
prosthetic groups, and carriers, Menaquinone and
ubiquinone].
Length = 382
Score = 36.1 bits (84), Expect = 0.035
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEA 101
D IIVG G G ++A LS + KI L+EA
Sbjct: 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEA 31
>gnl|CDD|224534 COG1619, LdcA, Uncharacterized proteins, homologs of microcin C7
resistance protein MccF [Defense mechanisms].
Length = 313
Score = 35.7 bits (83), Expect = 0.038
Identities = 18/60 (30%), Positives = 23/60 (38%), Gaps = 7/60 (11%)
Query: 300 KACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIPVIKNLRVG 359
K G+L + GI IL R S L + ++ LNIPVI L G
Sbjct: 230 KLAGILEKVSGI---ILGRFTKCTPNEYDPSYTLEEVL----RDLALSLNIPVIYGLDFG 282
>gnl|CDD|235905 PRK06996, PRK06996, hypothetical protein; Provisional.
Length = 398
Score = 35.4 bits (82), Expect = 0.063
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 69 EYDFIIVGAGPGGCTVAN---RLSEIPHWKILLLEA 101
++D IVGAGP G +A R S I L++A
Sbjct: 11 DFDIAIVGAGPVGLALAGWLARRSATRALSIALIDA 46
>gnl|CDD|218770 pfam05834, Lycopene_cycl, Lycopene cyclase protein. This family
consists of lycopene beta and epsilon cyclase proteins.
Carotenoids with cyclic end groups are essential
components of the photosynthetic membranes in all
plants, algae, and cyanobacteria. These lipid-soluble
compounds protect against photo-oxidation, harvest light
for photosynthesis, and dissipate excess light energy
absorbed by the antenna pigments. The cyclisation of
lycopene (psi, psi-carotene) is a key branch point in
the pathway of carotenoid biosynthesis. Two types of
cyclic end groups are found in higher plant carotenoids:
the beta and epsilon rings. Carotenoids with two beta
rings are ubiquitous, and those with one beta and one
epsilon ring are common; however, carotenoids with two
epsilon rings are rare.
Length = 374
Score = 35.4 bits (82), Expect = 0.065
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 71 DFIIVGAGPGGCTVANRLSEI-PHWKILLLEAG 102
D +IVGAG G +A RL + P ++LL++AG
Sbjct: 1 DLVIVGAGLAGLLLALRLRQARPGLRVLLIDAG 33
>gnl|CDD|216400 pfam01266, DAO, FAD dependent oxidoreductase. This family includes
various FAD dependent oxidoreductases:
Glycerol-3-phosphate dehydrogenase EC:1.1.99.5,
Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine
oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.
Length = 234
Score = 34.6 bits (80), Expect = 0.076
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103
D +++G G G + A L+ + LLE G
Sbjct: 1 DVVVIGGGIVGLSTAYELAR-RGLSVTLLERGD 32
>gnl|CDD|224172 COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy
production and conversion].
Length = 405
Score = 34.9 bits (81), Expect = 0.082
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 21/85 (24%)
Query: 36 VNEFDYAVKSYIEDG------IFEQLEYKSSNKDQDLLLEYDFIIVGAGPGG----CTVA 85
E+ + +K+ +ED + E E S +D LL +IVG GP G +A
Sbjct: 119 AAEYAFGLKT-LEDALRLRRHLLEAFEKASQEEDDRALL--TIVIVGGGPTGVELAGELA 175
Query: 86 NRLSEI--------PHWKILLLEAG 102
RL + +++L+EAG
Sbjct: 176 ERLHRLLKKFRVDPSELRVILVEAG 200
>gnl|CDD|235787 PRK06370, PRK06370, mercuric reductase; Validated.
Length = 463
Score = 34.8 bits (81), Expect = 0.11
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103
YD I++GAG G +A R + + K+ L+E G
Sbjct: 6 YDAIVIGAGQAGPPLAARAAGL-GMKVALIERGL 38
>gnl|CDD|224550 COG1635, THI4, Ribulose 1,5-bisphosphate synthetase, converts PRPP
to RuBP, flavoprotein [Carbohydrate transport and
metabolism].
Length = 262
Score = 34.2 bits (79), Expect = 0.12
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 62 KDQDLLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 105
+D LE D IIVGAGP G T A L++ K+ + E F
Sbjct: 23 EDLLDYLESDVIIVGAGPSGLTAAYYLAK-AGLKVAIFERKLSF 65
>gnl|CDD|223737 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino
acid transport and metabolism].
Length = 387
Score = 34.5 bits (79), Expect = 0.12
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103
+ D +I+G G G + A L+E + +LEAG
Sbjct: 4 KMDVVIIGGGIVGLSAAYYLAER-GADVTVLEAGE 37
>gnl|CDD|145231 pfam01946, Thi4, Thi4 family. This family includes a putative
thiamine biosynthetic enzyme.
Length = 229
Score = 34.0 bits (78), Expect = 0.12
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 12/63 (19%)
Query: 58 KSSNKDQDLLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEA-----------GHYFN 106
+ +D E D +IVGAGP G T A L++ K+ ++E G F+
Sbjct: 6 ERYFEDLLDYAESDVVIVGAGPSGLTAAYYLAK-KGLKVAIIERSLSPGGGAWGGGMLFS 64
Query: 107 YLV 109
+V
Sbjct: 65 AMV 67
>gnl|CDD|178267 PLN02661, PLN02661, Putative thiazole synthesis.
Length = 357
Score = 34.4 bits (79), Expect = 0.12
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 24 VSYLSSTSLSINVNEFDYAVKSYIEDGIFEQLEYKSSNKDQDLLLEYDFIIVGAGPGGCT 83
S SS++ ++N F +A I++ I + + D + D +IVGAG G +
Sbjct: 50 RSSSSSSTAPYDLNNFKFAP---IKESIVSREMTRRYMTDMITYADTDVVIVGAGSAGLS 106
Query: 84 VANRLSEIPHWKILLLE 100
A LS+ P+ K+ ++E
Sbjct: 107 CAYELSKNPNVKVAIIE 123
>gnl|CDD|232908 TIGR00292, TIGR00292, thiazole biosynthesis enzyme. This enzyme is
involved in the biosynthesis of the thiamine precursor
thiazole, and is repressed by thiamine. This family
includes c-thi1, a Citrus gene induced during natural
and ethylene induced fruit maturation and is highly
homologous to plant and yeast thi genes involved in
thiamine biosynthesis [Biosynthesis of cofactors,
prosthetic groups, and carriers, Thiamine].
Length = 254
Score = 34.0 bits (78), Expect = 0.15
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 12/63 (19%)
Query: 58 KSSNKDQDLLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLE-----------AGHYFN 106
+ +D E D IIVGAGP G T A L++ K+ +LE G F+
Sbjct: 10 ERYFEDLLDYAESDVIIVGAGPSGLTAAYYLAK-NGLKVCVLERSLAFGGGSWGGGMLFS 68
Query: 107 YLV 109
+V
Sbjct: 69 KIV 71
>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide
oxidoreductase. This family includes both class I and
class II oxidoreductases and also NADH oxidases and
peroxidases. This domain is actually a small NADH
binding domain within a larger FAD binding domain.
Length = 283
Score = 33.9 bits (78), Expect = 0.15
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLV 109
D +I+G GP G A RL+ K+ L+E Y
Sbjct: 1 DVVIIGGGPAGLAAAIRLAR-LGLKVALIEREGGTCYNR 38
>gnl|CDD|178082 PLN02463, PLN02463, lycopene beta cyclase.
Length = 447
Score = 33.9 bits (78), Expect = 0.17
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 53 EQLEYKSSNKDQDLLLEYDFIIVGAGPGGCTVANRLSE 90
E L+++ D D ++VG GP G VA ++SE
Sbjct: 12 ENLDFELPRFDPSKSRVVDLVVVGGGPAGLAVAQQVSE 49
>gnl|CDD|240384 PTZ00367, PTZ00367, squalene epoxidase; Provisional.
Length = 567
Score = 34.1 bits (78), Expect = 0.18
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 46 YIEDGIFEQLEYKSSNKDQDLLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLE 100
+ + I +L +K + + D YD IIVG G +A LS+ K+L+LE
Sbjct: 14 LLLNRILSRLRFKPARTNYD----YDVIIVGGSIAGPVLAKALSKQGR-KVLMLE 63
>gnl|CDD|233672 TIGR01989, COQ6, ubiquinone biosynthesis monooxygenase COQ6. This
model represents the monooxygenase responsible for the
4-hydroxylateion of the phenol ring in the aerobic
biosynthesis of ubiquinone.
Length = 437
Score = 33.6 bits (77), Expect = 0.23
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 70 YDFIIVGAGPGGCTVANRLSEIPHW---KILLLEAG 102
+D +IVG GP G +A L P K+LLL+A
Sbjct: 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAV 36
>gnl|CDD|130850 TIGR01790, carotene-cycl, lycopene cyclase family protein. This
family includes lycopene beta and epsilion cyclases
(which form beta and delta carotene, respectively) from
bacteria and plants as well as the plant
capsanthin/capsorubin and neoxanthin cyclases which
appear to have evolved from the plant lycopene cyclases.
The plant lycopene epsilon cyclases also transform
neurosporene to alpha zeacarotene.
Length = 388
Score = 33.6 bits (77), Expect = 0.23
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAG 102
D ++G GP G +A L+ P ++ L+E
Sbjct: 1 DLAVIGGGPAGLAIALELAR-PGLRVQLIEPH 31
>gnl|CDD|130849 TIGR01789, lycopene_cycl, lycopene cyclase. This model represents
a family of bacterial lycopene cyclases catalyzing the
transformation of lycopene to carotene. These enzymes
are found in a limited spectrum of alpha and gamma
proteobacteria as well as Flavobacterium.
Length = 370
Score = 32.9 bits (75), Expect = 0.35
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 71 DFIIVGAGPGGCTVANRLSEI-PHWKILLLEAG 102
D IIVG G G +A RL P ++I ++EAG
Sbjct: 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAG 33
>gnl|CDD|235241 PRK04176, PRK04176, ribulose-1,5-biphosphate synthetase;
Provisional.
Length = 257
Score = 32.5 bits (75), Expect = 0.39
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 68 LEYDFIIVGAGPGGCTVANRLSE 90
LE D IVGAGP G T A L++
Sbjct: 24 LEVDVAIVGAGPSGLTAAYYLAK 46
>gnl|CDD|183292 PRK11728, PRK11728, hydroxyglutarate oxidase; Provisional.
Length = 393
Score = 32.5 bits (75), Expect = 0.50
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 70 YDFIIVGAGPGGCTVANRLSE-IPHWKILLLE 100
YDF+I+G G G + A +L E P +I +LE
Sbjct: 3 YDFVIIGGGIVGLSTAMQLQERYPGARIAVLE 34
>gnl|CDD|223636 COG0562, Glf, UDP-galactopyranose mutase [Cell envelope biogenesis,
outer membrane].
Length = 374
Score = 32.3 bits (74), Expect = 0.55
Identities = 10/32 (31%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEA 101
+D++IVGAG G +A +++ ++L++E
Sbjct: 2 FDYLIVGAGLSGAVIAEVAAQLGK-RVLIVEK 32
>gnl|CDD|236223 PRK08294, PRK08294, phenol 2-monooxygenase; Provisional.
Length = 634
Score = 32.3 bits (74), Expect = 0.70
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 61 NKDQDLLLEYDFIIVGAGPGGCTVANRLSEIP 92
N+ DL E D +IVG GP G T+A +LS P
Sbjct: 24 NRPADLPDEVDVLIVGCGPAGLTLAAQLSAFP 55
>gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases
[General function prediction only].
Length = 415
Score = 31.8 bits (72), Expect = 0.76
Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 8/66 (12%)
Query: 72 FIIVGAGPGGCTVANRL-SEIPHWKILLLEAG---HY----FNYLVDIPVLNTNLILSPL 123
+IVG G G + A L + +I L+ Y + V + + + P
Sbjct: 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSLYVGGGIASLEDLRYPP 60
Query: 124 NWGYKT 129
+ T
Sbjct: 61 RFNRAT 66
>gnl|CDD|222355 pfam13738, Pyr_redox_3, Pyridine nucleotide-disulphide
oxidoreductase.
Length = 202
Score = 30.7 bits (70), Expect = 1.2
Identities = 8/31 (25%), Positives = 18/31 (58%)
Query: 73 IIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103
++VGAG G A+ L ++ +++++ G
Sbjct: 1 LVVGAGAAGMAFADHLLDLGDAPVIIVDRGA 31
>gnl|CDD|180854 PRK07121, PRK07121, hypothetical protein; Validated.
Length = 492
Score = 31.0 bits (71), Expect = 1.5
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 298 TKKACGVLATIKGIDHKILARKEVILSAGAF 328
+ GV A G I ARK V+L+AG F
Sbjct: 208 DGRVVGVEARRYGETVAIRARKGVVLAAGGF 238
>gnl|CDD|240421 PTZ00445, PTZ00445, p36-lilke protein; Provisional.
Length = 219
Score = 30.4 bits (69), Expect = 1.5
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 10/61 (16%)
Query: 31 SLSINVNEFDYAVKSYIEDGIFEQLEYKSS-NKDQDLLLE---------YDFIIVGAGPG 80
+ +F A K YIE G+F+ L S +K DLL E +D ++ G
Sbjct: 1 MPTSAQKKFHDAFKEYIESGLFDHLNPHESADKFVDLLNECGIKVIASDFDLTMITKHSG 60
Query: 81 G 81
G
Sbjct: 61 G 61
>gnl|CDD|216176 pfam00890, FAD_binding_2, FAD binding domain. This family includes
members that bind FAD. This family includes the
flavoprotein subunits from succinate and fumarate
dehydrogenase, aspartate oxidase and the alpha subunit
of adenylylsulphate reductase.
Length = 401
Score = 31.1 bits (71), Expect = 1.6
Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN 106
D +++G+G G A +E K+ ++E G F
Sbjct: 1 DVVVIGSGLAGLAAALEAAEAGL-KVAVVEKGQPFG 35
>gnl|CDD|223981 COG1053, SdhA, Succinate dehydrogenase/fumarate reductase,
flavoprotein subunit [Energy production and conversion].
Length = 562
Score = 31.2 bits (71), Expect = 1.7
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLE 100
E+D +++G G G A +E K+ LL
Sbjct: 5 HEFDVVVIGGGGAGLRAAIEAAEAGL-KVALLS 36
>gnl|CDD|223566 COG0492, TrxB, Thioredoxin reductase [Posttranslational
modification, protein turnover, chaperones].
Length = 305
Score = 30.3 bits (69), Expect = 2.2
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 70 YDFIIVGAGPGGCTVA 85
YD II+G GP G T A
Sbjct: 4 YDVIIIGGGPAGLTAA 19
>gnl|CDD|233689 TIGR02023, BchP-ChlP, geranylgeranyl reductase. This model
represents a group of geranylgeranyl reductases
specific for the biosyntheses of bacteriochlorophyll
and chlorophyll. It is unclear whether the processes of
isoprenoid ligation to the chlorin ring and reduction
of the geranylgeranyl chain to a phytyl chain are
necessarily ordered the same way in all species (see
introduction to ) [Biosynthesis of cofactors,
prosthetic groups, and carriers, Chlorophyll and
bacteriochlorphyll].
Length = 388
Score = 30.5 bits (69), Expect = 2.3
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 70 YDFIIVGAGPGGCTVANRLSEIPHWKILL 98
YD ++G GP G T A L+ ILL
Sbjct: 1 YDVAVIGGGPSGATAAETLARAGIETILL 29
>gnl|CDD|236967 PRK11749, PRK11749, dihydropyrimidine dehydrogenase subunit A;
Provisional.
Length = 457
Score = 30.5 bits (70), Expect = 2.3
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 74 IVGAGPGGCTVANRL 88
++GAGP G T A+RL
Sbjct: 145 VIGAGPAGLTAAHRL 159
>gnl|CDD|225307 COG2509, COG2509, Uncharacterized FAD-dependent dehydrogenases
[General function prediction only].
Length = 486
Score = 30.4 bits (69), Expect = 2.3
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
Query: 58 KSSNKDQD--LLLEYDFIIVGAGPGGCTVANRLSE----IPHWKILLLEAGH 103
+ DQ+ + D +IVGAGP G A LS +P KI +++ G
Sbjct: 5 LPIDHDQEALMNAALDVVIVGAGPAGLFAAYELSGDARKVPILKIYVVDVGL 56
>gnl|CDD|235798 PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed.
Length = 462
Score = 30.5 bits (70), Expect = 2.6
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 69 EYDFIIVGAGPGGCTVANRLSE 90
EYD I++GAGPGG A R ++
Sbjct: 4 EYDVIVIGAGPGGYVAAIRAAQ 25
>gnl|CDD|233368 TIGR01350, lipoamide_DH, dihydrolipoamide dehydrogenase. This
model describes dihydrolipoamide dehydrogenase, a
flavoprotein that acts in a number of ways. It is the
E3 component of dehydrogenase complexes for pyruvate,
2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can
also serve as the L protein of the glycine cleavage
system. This family includes a few members known to
have distinct functions (ferric leghemoglobin reductase
and NADH:ferredoxin oxidoreductase) but that may be
predicted by homology to act as dihydrolipoamide
dehydrogenase as well. The motif GGXCXXXGCXP near the
N-terminus contains a redox-active disulfide.
Length = 460
Score = 30.3 bits (69), Expect = 2.8
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 69 EYDFIIVGAGPGGCTVANRL 88
YD I++G GPGG A R
Sbjct: 1 AYDVIVIGGGPGGYVAAIRA 20
>gnl|CDD|180419 PRK06134, PRK06134, putative FAD-binding dehydrogenase; Reviewed.
Length = 581
Score = 30.5 bits (69), Expect = 2.9
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 300 KACGVLATIKGIDHKILARKEVILSAGAF--NSPKLLMLSGIGPQEHLN 346
+ G + G +I ARK V+L+AG F + + L P H +
Sbjct: 249 RVAGAVVETPGGLQEIRARKGVVLAAGGFPHDPARRAALFPRAPTGHEH 297
>gnl|CDD|130488 TIGR01421, gluta_reduc_1, glutathione-disulfide reductase,
animal/bacterial. The tripeptide glutathione is an
important reductant, e.g., for maintaining the cellular
thiol/disulfide status and for protecting against
reactive oxygen species such as hydrogen peroxide.
Glutathione-disulfide reductase regenerates reduced
glutathione from oxidized glutathione (glutathione
disulfide) + NADPH. This model represents one of two
closely related subfamilies of glutathione-disulfide
reductase. Both are closely related to trypanothione
reductase, and separate models are built so each of the
three can describe proteins with conserved function.
This model describes glutathione-disulfide reductases of
animals, yeast, and a number of animal-resident bacteria
[Energy metabolism, Electron transport].
Length = 450
Score = 30.2 bits (68), Expect = 2.9
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEA 101
YD++++G G GG A R +E K LL+EA
Sbjct: 2 HYDYLVIGGGSGGIASARRAAEHGA-KALLVEA 33
>gnl|CDD|224983 COG2072, TrkA, Predicted flavoprotein involved in K+ transport
[Inorganic ion transport and metabolism].
Length = 443
Score = 30.1 bits (68), Expect = 3.1
Identities = 12/47 (25%), Positives = 17/47 (36%), Gaps = 11/47 (23%)
Query: 70 YDFIIVGAGPGGCTVANRLSE--IPHWKILLLEAG-------HYFNY 107
D I+GAG G A L + +P ++ E Y Y
Sbjct: 9 TDVAIIGAGQSGLAAAYALKQAGVP--DFVIFEKRDDVGGTWRYNRY 53
>gnl|CDD|185420 PTZ00058, PTZ00058, glutathione reductase; Provisional.
Length = 561
Score = 30.0 bits (67), Expect = 3.3
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Query: 57 YKSSNKDQDLLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLE 100
+ + YD I++G G GG A R + K+ L+E
Sbjct: 40 HLKKKPR----MVYDLIVIGGGSGGMAAARRAARNK-AKVALVE 78
>gnl|CDD|232791 TIGR00031, UDP-GALP_mutase, UDP-galactopyranose mutase. This
enzyme is involved in the conversion of UDP-GALP into
UDP-GALF through a 2-keto intermediate. It contains FAD
as a cofactor. The gene is known as glf, ceoA, and rfbD.
It is known experimentally in E. coli, Mycobacterium
tuberculosis, and Klebsiella pneumoniae [Cell envelope,
Biosynthesis and degradation of surface polysaccharides
and lipopolysaccharides].
Length = 377
Score = 29.7 bits (67), Expect = 3.3
Identities = 13/31 (41%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Query: 70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLE 100
+D+IIVGAG G +AN L+++ ++L++E
Sbjct: 2 FDYIIVGAGLSGIVLANILAQLNK-RVLVVE 31
>gnl|CDD|235584 PRK05732, PRK05732, 2-octaprenyl-6-methoxyphenyl hydroxylase;
Validated.
Length = 395
Score = 29.8 bits (68), Expect = 3.4
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 70 YDFIIVGAGPGGCTVANRLSEIPH--WKILLLEA 101
D IIVG G G T+A LS + H + L+EA
Sbjct: 4 MDVIIVGGGMAGATLALALSRLSHGGLPVALIEA 37
>gnl|CDD|222141 pfam13454, NAD_binding_9, FAD-NAD(P)-binding.
Length = 153
Score = 29.1 bits (66), Expect = 3.4
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 74 IVGAGPGGCTVANRLSE 90
I+GAGP G +V RL
Sbjct: 2 IIGAGPRGLSVLERLLR 18
>gnl|CDD|179162 PRK00910, ribB, 3,4-dihydroxy-2-butanone 4-phosphate synthase;
Provisional.
Length = 218
Score = 29.6 bits (66), Expect = 3.4
Identities = 19/66 (28%), Positives = 29/66 (43%)
Query: 241 LVDYNGKTQTGFARAQATLHKRSRRSSAKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKK 300
+V+ N QT F + H + SA+D + IK N K + + P+ +
Sbjct: 85 VVNNNSANQTAFTVSIEAKHGVTTGVSAQDRVTTIKTAANPQAKPEDLARPGHVFPLRAR 144
Query: 301 ACGVLA 306
A GVLA
Sbjct: 145 AGGVLA 150
>gnl|CDD|215362 PLN02676, PLN02676, polyamine oxidase.
Length = 487
Score = 30.1 bits (68), Expect = 3.5
Identities = 16/29 (55%), Positives = 18/29 (62%)
Query: 73 IIVGAGPGGCTVANRLSEIPHWKILLLEA 101
IIVGAG G + A LSE IL+LEA
Sbjct: 30 IIVGAGMSGISAAKTLSEAGIEDILILEA 58
>gnl|CDD|236001 PRK07364, PRK07364, 2-octaprenyl-6-methoxyphenyl hydroxylase;
Validated.
Length = 415
Score = 29.6 bits (67), Expect = 3.7
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 59 SSNKDQDLLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEA 101
S L YD IVG G G T+A L + +I L+EA
Sbjct: 8 SPTLPSTRSLTYDVAIVGGGIVGLTLAAALKD-SGLRIALIEA 49
>gnl|CDD|223643 COG0569, TrkA, K+ transport systems, NAD-binding component
[Inorganic ion transport and metabolism].
Length = 225
Score = 29.2 bits (66), Expect = 5.0
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 71 DFIIVGAGPGGCTVANRLSEIPH 93
II+GAG G +VA LSE H
Sbjct: 2 KIIIIGAGRVGRSVARELSEEGH 24
>gnl|CDD|216530 pfam01494, FAD_binding_3, FAD binding domain. This domain is
involved in FAD binding in a number of enzymes.
Length = 349
Score = 29.2 bits (66), Expect = 5.0
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 69 EYDFIIVGAGPGGCTVANRLSE 90
E D +IVG GP G +A L+
Sbjct: 1 ETDVLIVGGGPAGLMLALLLAR 22
>gnl|CDD|222125 pfam13434, K_oxygenase, L-lysine 6-monooxygenase (NADPH-requiring).
This is family of Rossmann fold oxidoreductases that
catalyzes the NADPH-dependent hydroxylation of lysine at
the N6 position, EC:1.14.13.59.
Length = 335
Score = 29.0 bits (66), Expect = 5.5
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEA 101
YD I +G GP ++A L EIP + L E
Sbjct: 3 YDLIGIGIGPFNLSLAALLEEIPELRALFFER 34
>gnl|CDD|180409 PRK06115, PRK06115, dihydrolipoamide dehydrogenase; Reviewed.
Length = 466
Score = 29.0 bits (65), Expect = 6.2
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 69 EYDFIIVGAGPGGCTVANR 87
YD +I+G GPGG A R
Sbjct: 3 SYDVVIIGGGPGGYNAAIR 21
>gnl|CDD|180319 PRK05945, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 575
Score = 28.9 bits (65), Expect = 6.6
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 67 LLEYDFIIVGAGPGGCTVA 85
+LE+D +IVG G GC A
Sbjct: 1 MLEHDVVIVGGGLAGCRAA 19
>gnl|CDD|183983 PRK13339, PRK13339, malate:quinone oxidoreductase; Reviewed.
Length = 497
Score = 28.9 bits (65), Expect = 6.6
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 71 DFIIVGAGPGGCTVANRLSEI-PHWKILLLE 100
D ++VGAG T L E+ P W I ++E
Sbjct: 8 DVVLVGAGILSTTFGVLLKELDPDWNIEVVE 38
>gnl|CDD|224154 COG1233, COG1233, Phytoene dehydrogenase and related proteins
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 487
Score = 28.9 bits (65), Expect = 6.6
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Query: 69 EYDFIIVGAGPGGCTVANRLSEIPH-WKILLLEA 101
YD +++GAG G A L+ K+ +LE
Sbjct: 3 MYDVVVIGAGLNGLAAAALLAR--AGLKVTVLEK 34
>gnl|CDD|224153 COG1232, HemY, Protoporphyrinogen oxidase [Coenzyme metabolism].
Length = 444
Score = 28.8 bits (65), Expect = 6.9
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 72 FIIVGAGPGGCTVANRLSE-IPHWKILLLEAG 102
I+G G G + A RL + P ++ L EA
Sbjct: 3 IAIIGGGIAGLSAAYRLQKAGPDVEVTLFEAD 34
>gnl|CDD|233412 TIGR01438, TGR, thioredoxin and glutathione reductase
selenoprotein. This homodimeric, FAD-containing member
of the pyridine nucleotide disulfide oxidoreductase
family contains a C-terminal motif Cys-SeCys-Gly, where
SeCys is selenocysteine encoded by TGA (in some sequence
reports interpreted as a stop codon). In some members of
this subfamily, Cys-SeCys-Gly is replaced by
Cys-Cys-Gly. The reach of the selenium atom at the
C-term arm of the protein is proposed to allow broad
substrate specificity.
Length = 484
Score = 29.0 bits (65), Expect = 7.3
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEA 101
+YD I++G G GG A + K++LL+
Sbjct: 2 DYDLIVIGGGSGGLAAAKEAAAYGA-KVMLLDF 33
>gnl|CDD|183139 PRK11445, PRK11445, putative oxidoreductase; Provisional.
Length = 351
Score = 28.9 bits (65), Expect = 7.4
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLE 100
YD I+G GP G +A L+ K++ ++
Sbjct: 1 HYDVAIIGLGPAGSALARLLAG--KMKVIAID 30
>gnl|CDD|131515 TIGR02462, pyranose_ox, pyranose oxidase. Pyranose oxidase (also
called glucose 2-oxidase) converts D-glucose and
molecular oxygen to 2-dehydro-D-glucose and hydrogen
peroxide. Peroxide production is believed to be
important to the wood rot fungi in which this enzyme is
found for lignin degradation.
Length = 544
Score = 28.7 bits (64), Expect = 8.1
Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 16/63 (25%)
Query: 70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLVDIPVLNTNLILSPLNWGYKT 129
YD I G+GP GCT A L ++AG +V+I + S L G
Sbjct: 1 YDVFIAGSGPIGCTYAR----------LCVDAG-LKVAMVEIGAAD-----SFLKIGAHK 44
Query: 130 EKE 132
+ E
Sbjct: 45 KNE 47
>gnl|CDD|215308 PLN02568, PLN02568, polyamine oxidase.
Length = 539
Score = 28.6 bits (64), Expect = 9.2
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
Query: 73 IIVGAGPGGCTVANRLSEIPH----WKILLLEAG 102
+I+GAG G T AN+L +++ ++E G
Sbjct: 9 VIIGAGMAGLTAANKLYTSSAANDMFELTVVEGG 42
>gnl|CDD|240665 cd12189, LKR_SDH_like, bifunctional lysine ketoglutarate reductase
/saccharopine dehydrogenase enzyme. Bifunctional lysine
ketoglutarate reductase /saccharopine dehydrogenase
protein is a pair of enzymes linked on a single
polypeptide chain that catalyze the initial, consecutive
steps of lysine degradation. These proteins are related
to the 2-domain saccharopine dehydrogenases. Along with
formate dehydrogenase and similar enzymes, SDH consists
paired domains resembling Rossmann folds in which the
NAD-binding domain is inserted within the linear
sequence of the catalytic domain. In this bifunctional
enzyme, the LKR domain is N-terminal of the SDH domain.
These proteins have a close match to the active site
motif of SDHs, and an NAD-binding site motif that is a
partial match to that found in SDH and other FDH-related
proteins.
Length = 433
Score = 28.7 bits (65), Expect = 9.4
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 10/40 (25%)
Query: 221 EYNTPMLDAFLQAGMEAGYPLVDY------NGKTQTGFAR 254
YN P+LDA L+ + L+DY +GK F
Sbjct: 94 PYNMPLLDAILEKNIR----LIDYELIVDESGKRLVAFGW 129
>gnl|CDD|236374 PRK09077, PRK09077, L-aspartate oxidase; Provisional.
Length = 536
Score = 28.3 bits (64), Expect = 10.0
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 63 DQDLLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG 102
+ + D +I+G+G G ++A RL+E H ++ +L G
Sbjct: 2 NTSPEHQCDVLIIGSGAAGLSLALRLAE--HRRVAVLSKG 39
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.137 0.416
Gapped
Lambda K H
0.267 0.0733 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 26,141,136
Number of extensions: 2580212
Number of successful extensions: 2494
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2463
Number of HSP's successfully gapped: 89
Length of query: 511
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 410
Effective length of database: 6,457,848
Effective search space: 2647717680
Effective search space used: 2647717680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.3 bits)