RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy760
(511 letters)
>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG
BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP:
c.3.1.2 d.16.1.1
Length = 587
Score = 430 bits (1107), Expect = e-146
Identities = 97/419 (23%), Positives = 172/419 (41%), Gaps = 38/419 (9%)
Query: 69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG---HYFNYLVDIPVLNTNLILSPLNW 125
YD+II G G G TVA +L+E P K+L++E G +++ P + + ++
Sbjct: 24 TYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNAYGQIFGTTVDQ 83
Query: 126 GYKTEKEDCRACLGLKGQRCPWPSGKGVGGTSLINTMLYTRGNKRNYDDWAKL-GNYGWS 184
Y T + + +GKG+GG++LIN +TR +K D W K+ G GW+
Sbjct: 84 NYLTVP-------LINNRTNNIKAGKGLGGSTLINGDSWTRPDKVQIDSWEKVFGMEGWN 136
Query: 185 YNEVLPYFKKAE--------RIQISELQNSSYHGTQGFIGVDYTEY---NTPMLDAFLQA 233
++ + Y KKAE ++ N++ HGT G + + +P++ A +
Sbjct: 137 WDNMFEYMKKAEAARTPTAAQLAAGHSFNATCHGTNGTVQSGARDNGQPWSPIMKALMNT 196
Query: 234 GMEAGYPLV-DYNGKTQTGFARAQATLHKRSRR-SSAKDYIDPIKKRCNLTVKDSSFVKK 291
G P+ D+ G + L + R +A+ ++ P +R NL + V K
Sbjct: 197 VSALGVPVQQDFLCGHPRGVSMIMNNLDENQVRVDAARAWLLPNYQRSNLEILTGQMVGK 256
Query: 292 ILIDPVT--KKACGV-LATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDL 348
+L +A GV T K ++ + A+ EV+L+AG+ SP +L SGIG + L+
Sbjct: 257 VLFKQTASGPQAVGVNFGTNKAVNFDVFAKHEVLLAAGSAISPLILEYSGIGLKSVLDQA 316
Query: 349 NIPVIKNLRVGENLQEHLAMAGLTFLVNQPIGLLQDRLIKEMPVHFAGKLRHSLS-PITN 407
N+ + +L VG N+Q+ ++ + + V FA
Sbjct: 317 NVTQLLDLPVGINMQDQT-TTTVSSRASSAGAG------QGQAVFFANFTETFGDYAPQA 369
Query: 408 SETLSTNIKTIFAAH---HDKINKSGEDITIRLIKDLIGILIALALPRKFSTWGKFQVS 463
+ L+T + N + + ++ + T GK
Sbjct: 370 RDLLNTKLDQWAEETVARGGFHNVTALKVQYENYRNWLLDEDVAFAELFMDTEGKINFD 428
>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A
{Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*
Length = 583
Score = 419 bits (1080), Expect = e-142
Identities = 96/333 (28%), Positives = 157/333 (47%), Gaps = 27/333 (8%)
Query: 69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG---HYFNYLVDIPVLNTNLILSPLNW 125
D+II G G G T A RL+E P+ +L++E+G +++ ++ S ++
Sbjct: 19 TVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIFGSSVDH 78
Query: 126 GYKTEKEDCRACLGLKGQRCPWPSGKGVGGTSLINTMLYTRGNKRNYDDWAKL-GNYGWS 184
Y+T + Q SG G+GG++L+N +TR +K D W + GN GW+
Sbjct: 79 AYETVEL------ATNNQTALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWN 132
Query: 185 YNEVLPYFKKAE--------RIQISELQNSSYHGTQGFIGV---DYTEYNTPMLDAFLQA 233
++ V Y +AE +I N+S HG G + D + +P++ A + A
Sbjct: 133 WDNVAAYSLQAERARAPNAKQIAAGHYFNASCHGVNGTVHAGPRDTGDDYSPIVKALMSA 192
Query: 234 GMEAGYPLV-DYNGKTQTGFARAQATLHKRSRR-SSAKDYIDPIKKRCNLTVKDSSFVKK 291
+ G P D+ G + TLH+ R +A++++ P +R NL V +V K
Sbjct: 193 VEDRGVPTKKDFGCGDPHGVSMFPNTLHEDQVRSDAAREWLLPNYQRPNLQVLTGQYVGK 252
Query: 292 ILIDP--VTKKACGV-LATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDL 348
+L+ T +A GV T KG H + A+ EV+L+AG+ SP +L SGIG + L L
Sbjct: 253 VLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTILEYSGIGMKSILEPL 312
Query: 349 NIPVIKNLRVGENLQEHLAMAGLTFLVNQPIGL 381
I + +L VG NLQ+ + +
Sbjct: 313 GIDTVVDLPVGLNLQDQTTA-TVRSRITSAGAG 344
>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase,
flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}
Length = 566
Score = 411 bits (1059), Expect = e-139
Identities = 95/335 (28%), Positives = 157/335 (46%), Gaps = 30/335 (8%)
Query: 69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG----HYFNYLVDIPVLNTNLILSP-L 123
++D+++VGAG G VA RL+E P +L+LEAG + + P+L L+ +
Sbjct: 2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDENVLG--AEAPLLAPGLVPNSIF 59
Query: 124 NWGYKTEKEDCRACLGLKGQRCPWPSGKGVGGTSLINTMLYTRGNKRNYDDWAKL-GNYG 182
+W Y T A G G+ +P G+ +GG+S ++ M+ RG+ ++D +A + G+ G
Sbjct: 60 DWNYTTT-----AQAGYNGRSIAYPRGRMLGGSSSVHYMVMMRGSTEDFDRYAAVTGDEG 114
Query: 183 WSYNEVLPYFKKAERIQ-------ISELQNSSYHGTQGFIGVDYTEYNTPMLDAFLQAGM 235
W+++ + + +K E + S + HGT G + + + TP+ D L
Sbjct: 115 WNWDNIQQFVRKNEMVVPPADNHNTSGEFIPAVHGTNGSVSISLPGFPTPLDDRVLATTQ 174
Query: 236 EAGYPLV---DYNGKTQTGFARAQATLHKRSRRSSAKDYIDPIKKRCNLTVKDSSFVKKI 292
E D G + + A++ R SS+ Y+ P + R NL+V ++ V K+
Sbjct: 175 EQSEEFFFNPDMGTGHPLGISWSIASVGNGQRSSSSTAYLRPAQSRPNLSVLINAQVTKL 234
Query: 293 LIDPVTKK-----ACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLND 347
+ T + A+KEV+LSAG+ +P LL LSGIG + L+
Sbjct: 235 VNSGTTNGLPAFRCVEYAEQEGAPTTTVCAKKEVVLSAGSVGTPILLQLSGIGDENDLSS 294
Query: 348 LNIPVIKNLR-VGENLQEHLAMAGLTFLVNQPIGL 381
+ I I N VG NL +HL + F VN
Sbjct: 295 VGIDTIVNNPSVGRNLSDHLLL-PAAFFVNSNQTF 328
>3q9t_A Choline dehydrogenase and related flavoproteins;
glucose-methanol-choline oxidoreductase family, formate
OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A
{Aspergillus oryzae}
Length = 577
Score = 411 bits (1059), Expect = e-139
Identities = 95/332 (28%), Positives = 149/332 (44%), Gaps = 24/332 (7%)
Query: 69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY---FNYLVDIPVLNTNLILSPLNW 125
+DF+IVG G G TVA RL+E P+ +L++EAG + P +L S +W
Sbjct: 6 HFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIGNPEDIPEITTPSSAMDLRNSKYDW 65
Query: 126 GYKTEKEDCRACLGLKGQRCPWPS--GKGVGGTSLINTMLYTRGNKRNYDDWAKLGNYGW 183
YKT +R P+ GK +GG+S +N + G+K +D W + G W
Sbjct: 66 AYKTTMVR-----RDDYERIEKPNTRGKTLGGSSSLNYFTWVPGHKATFDQWEEFGGKEW 120
Query: 184 SYNEVLPYFKKAE---RIQISELQNSSYHGTQGFIGV---DYTEYNTPMLDAFLQAGMEA 237
+++ ++PY +K+ G G I + + + P + +A
Sbjct: 121 TWDPLVPYLRKSATYHDDPRLYSPELEKIGGGGPIPISHAELIDEMAPFRENLTKAWKSM 180
Query: 238 GYPLV-DYNGKTQTGFARAQATLHKRSRRSSAKDYIDPIKKRCNLTVKDSSFVKKILIDP 296
G PL+ + G T R +RS + +K + N+T+ K+++I+
Sbjct: 181 GQPLIENIYDGEMDGLTHCCDT-IYRGQRSGSF---LFVKNKPNITIVPEVHSKRLIINE 236
Query: 297 VTKKACGV-LATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIPVIKN 355
+ GV + T G + A +EVILS G F +PKLLMLSGIGP L+ I I +
Sbjct: 237 ADRTCKGVTVVTAAGNELNFFADREVILSQGVFETPKLLMLSGIGPTRELSRHGINTIVD 296
Query: 356 LR-VGENLQEHLAMAGLTFLVNQPIGLLQDRL 386
R VG+NL +H + V G+ L
Sbjct: 297 SRHVGQNLMDHPGV-PFVLRVKDGFGMDDVLL 327
>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding,
oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}
Length = 526
Score = 371 bits (955), Expect = e-124
Identities = 88/322 (27%), Positives = 152/322 (47%), Gaps = 21/322 (6%)
Query: 69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG---HYFNYLVDIPVLNTNLILSPLNW 125
D +IVG G G +A RLSE P ++LL+EAG + P L +W
Sbjct: 17 NCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEEPTDP--DIWNPAAWPALQGRSYDW 74
Query: 126 GYKTEKEDCRACLGLKGQRCPWPSGKGVGGTSLINTMLYTRGNKRNYDDWAKL-GNYGWS 184
Y+TE + G G+ W G+ +GG+S ++ M Y RG+ ++ W G+ W
Sbjct: 75 DYRTEAQA-----GTAGRAHHWARGRLIGGSSCLHAMGYMRGHPSDFQAWVDASGDRRWG 129
Query: 185 YNEVLPYFKKAERIQISELQNSSYHGTQGFIGV-DYTEYNTPMLDAFLQAGMEAGYPLV- 242
++E+LP F+ E L HG G + + + +P+ AF++AG G P +
Sbjct: 130 WDELLPVFQAIED---HPLGGDGIHGKGGPLPIHLPADEVSPLARAFIEAGASLGLPRLE 186
Query: 243 DYNGKTQTGFARAQATLHKRSRRSSAKDYIDP-IKKRCNLTVKDSSFVKKILIDPVTKKA 301
+N G + R ++A ++ ++ R NLT+ S V+++ ++ +
Sbjct: 187 GHNSGEMIGVTPNSLNIRDGRRVTAADAWLTKAVRGRKNLTILTGSRVRRLKLE--GNQV 244
Query: 302 CGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIPVIKNLR-VGE 360
+ + ++ A +++L AGA SP LLM SGIGP + L+ + + ++ +G
Sbjct: 245 RSLEVVGRQGSAEVFAD-QIVLCAGALESPALLMRSGIGPHDVLDAAGVGCLIDMPDIGR 303
Query: 361 NLQEHLAMAGLTFLVNQPIGLL 382
NLQ+HL AG + +P+
Sbjct: 304 NLQDHLLGAGNLYAARKPVPPS 325
>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently
linked FAD, C4A-adduct, flavoprotein, oxidoreductase;
HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A*
3ljp_A*
Length = 546
Score = 364 bits (936), Expect = e-121
Identities = 97/322 (30%), Positives = 149/322 (46%), Gaps = 18/322 (5%)
Query: 69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG-HYFNYLVDIPVLNTNLILSP-LNWG 126
E+D+I+VG G G VA RLSE P + L+EAG + + +L +W
Sbjct: 13 EFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDWD 72
Query: 127 YKTEKEDCRACLGLKGQRCPWPSGKGVGGTSLINTMLYTRGNKRNYDDW-AKLGNYGWSY 185
Y E ++ K +GG S N+ + + + D+W AK G GW+
Sbjct: 73 YPIEPQE-----NG-NSFMRHARAKVMGGCSSHNSCIAFWAPREDLDEWEAKYGATGWNA 126
Query: 186 NEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTEYNTPMLDAFLQAGMEAGYPLV-DY 244
P +K+ E + + ++ +HG G + + P A L A +AG P
Sbjct: 127 EAAWPLYKRLETNEDAG-PDAPHHGDSGPVHLMNVPPKDPTGVALLDACEQAGIPRAKFN 185
Query: 245 NGKTQT-GFARAQATLHKRSRR-SSAKDYIDPIKKRCNLTVKDSSFVKKILIDPVTKKAC 302
G T G Q R SS+ YI PI ++ N T+ ++++ D ++
Sbjct: 186 TGTTVVNGANFFQINRRADGTRSSSSVSYIHPIVEQENFTLLTGLRARQLVFDA-DRRCT 244
Query: 303 GV--LATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIPVIKNLR-VG 359
GV + + G H++ AR EV+LS GA ++PKLLMLSGIGP HL + I V+ + VG
Sbjct: 245 GVDIVDSAFGHTHRLTARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVG 304
Query: 360 ENLQEHLAMAGLTFLVNQPIGL 381
E+LQ+H + F QP+
Sbjct: 305 EHLQDHPEG-VVQFEAKQPMVA 325
>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond,
cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A
{Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A*
3gdn_A*
Length = 536
Score = 353 bits (909), Expect = e-117
Identities = 83/339 (24%), Positives = 138/339 (40%), Gaps = 35/339 (10%)
Query: 48 EDGIFEQLEYKSSNKDQDLLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNY 107
D F L + D +L YD++IVG G GC +A LSE +K+L+LE G
Sbjct: 5 SDHDFSYLSFAYDATDLELEGSYDYVIVGGGTSGCPLAATLSE--KYKVLVLERGSLPTA 62
Query: 108 LVDIPVLNTNLILSPLNWGYKTEKEDCRACLGLKGQRCPWPSGKGVGGTSLINTMLYTRG 167
++ + + KT + G+ +GGTS+IN +Y R
Sbjct: 63 YPNVLTADGFVYNLQQEDDGKTP-----VERFVSEDGIDNVRGRVLGGTSIINAGVYARA 117
Query: 168 NKRNYDDWAKLGNYGWSYNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTEYNTPML 227
N Y W + V ++ E Y + +
Sbjct: 118 NTSIYSASGV----DWDMDLVNQTYEWVED-------TIVYKPNSQ-------SWQSVTK 159
Query: 228 DAFLQAGMEAGYPLVDYNGKTQTGFARAQATLHKRSRRSSAKDYIDPIKKRCNLTVKDSS 287
AFL+AG+ + ++ + G +T + R +A + ++ NL V +
Sbjct: 160 TAFLEAGVHPNH---GFSLDHEEGTRITGSTFDNKGTRHAADELLNK-GNSNNLRVGVHA 215
Query: 288 FVKKILIDPVT-KKACGVLATIKGIDHK---ILARKEVILSAGAFNSPKLLMLSGIGPQE 343
V+KI+ A GV+ + ++ EVI+SAG +P+LL+LSG+GP+
Sbjct: 216 SVEKIIFSNAPGLTATGVIYRDSNGTPHQAFVRSKGEVIVSAGTIGTPQLLLLSGVGPES 275
Query: 344 HLNDLNIPVIKNLR-VGENLQEHLAMAGLTFLVNQPIGL 381
+L+ LNIPV+ + VG+ L ++ + L PI
Sbjct: 276 YLSSLNIPVVLSHPYVGQFLHDNP-RNFINILPPNPIEP 313
>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold,
alpha/beta structure, rossman 6-hydroxylated FAD,
oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A
{Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1
PDB: 1naa_A*
Length = 546
Score = 316 bits (812), Expect = e-102
Identities = 76/339 (22%), Positives = 118/339 (34%), Gaps = 48/339 (14%)
Query: 69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG----HYFNYLVDIPVLNTNLILSP-- 122
YD+IIVGAGPGG A+RLSE K+LLLE G P ++ +
Sbjct: 7 PYDYIIVGAGPGGIIAADRLSEAGK-KVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDI 65
Query: 123 --LNWGYKTEKEDCRACLGLKGQRCPWPSGKGVGGTSLINTMLYTRGNKRNYDDWAKLGN 180
L T+ + +G VGG + +N LY N ++
Sbjct: 66 PGLFESLFTDSNP-----FWWCKDITVFAGCLVGGGTSVNGALYWYPNDGDFSSSV---- 116
Query: 181 YGW--SYNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTEYNTPMLDAFLQAGMEAG 238
GW S+ PY K S L ++ + T G + E + ++ L+
Sbjct: 117 -GWPSSWTNHAPYTSKLS----SRLPSTDHPSTDGQRYL---EQSFNVVSQLLKG-QGYN 167
Query: 239 YPLV-DYNGKTQTGFARAQATLHKRSRRSSAKDYIDPIKKRCNLTVKDSSFVKKILIDPV 297
+ D F + R Y+ R N T K + V ++ +
Sbjct: 168 QATINDNPNYKDHVFGYSAFDFLNGKRAGPVATYLQTALARPNFTFKTNVMVSNVVRN-- 225
Query: 298 TKKACGV----LATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIPVI 353
+ GV + + VILSAGAF + ++L SGIGP + + +
Sbjct: 226 GSQILGVQTNDPTLGPNGFIPVTPKGRVILSAGAFGTSRILFQSGIGPTDMIQTVQSNPT 285
Query: 354 KNLR-----------VGENLQEHLAMAGLTFLVNQPIGL 381
VG N Q++ ++ L F
Sbjct: 286 AAAALPPQNQWINLPVGMNAQDNPSI-NLVFTHPSIDAY 323
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism,
oxidoreductase, atomic RESO; HET: FAD; 0.92A
{Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A*
1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A*
1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*
Length = 504
Score = 119 bits (300), Expect = 3e-29
Identities = 54/335 (16%), Positives = 104/335 (31%), Gaps = 51/335 (15%)
Query: 69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFN--YLVDIPVLNTNLILSPLNWG 126
+++G G G A RL E + L+LE G +N +W
Sbjct: 5 YVPAVVIGTGYGAAVSALRLGE-AGVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRSSWF 63
Query: 127 YKTEKEDCRACLGLKGQRCP-----------------WPSGKGVGGTSLINTMLYTRGNK 169
+ + L L G+GVGG SL+N + +
Sbjct: 64 KNRTEAPLGSFLWLDVVNRNIDPYAGVLDRVNYDQMSVYVGRGVGGGSLVNGGMAVEPKR 123
Query: 170 RNYDDWAKLGNYGWSYNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTEYNTPMLDA 229
+++ S YF +A + ++ T+ F ++ ++ +
Sbjct: 124 SYFEEILPR---VDSSEMYDRYFPRANS-----MLRVNHIDTKWFEDTEWYKFARVSREQ 175
Query: 230 FLQAGMEAGY-PL-VDYNGKTQTGFARAQA--------TLHKRSRRSSAKDYIDPIKKRC 279
+AG+ + P D+ + + ++S K Y+
Sbjct: 176 AGKAGLGTVFVPNVYDFGYMQREAAGEVPKSALATEVIYGNNHGKQSLDKTYLAAALGTG 235
Query: 280 NLTVKDSSFVKKILIDPVTKKACGVLATIKG---IDHKILARKEVILSAGAFNSPKLLML 336
+T++ VK I A V + K ++ + + L AG+ S +LL+
Sbjct: 236 KVTIQTLHQVKTIRQTKDGGYALTVEQKDTDGKLLATKEISCRYLFLGAGSLGSTELLVR 295
Query: 337 SGI-GPQEHLNDLNIPVIKNLRVGENLQEHLAMAG 370
+ G +LN VG + +
Sbjct: 296 ARDTGTLPNLNS---------EVGAGWGPNGNIMT 321
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer,
GMC oxidoredu PHBH fold, rossmann domain,
oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes
ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A*
2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A*
3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A*
3fdy_A* ...
Length = 623
Score = 112 bits (281), Expect = 1e-26
Identities = 47/334 (14%), Positives = 107/334 (32%), Gaps = 27/334 (8%)
Query: 68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLVDIP----VLNTNLILSPL 123
++YD +IVG+GP GCT A L +K+ + + G + L + +
Sbjct: 45 IKYDVVIVGSGPIGCTYARELVG-AGYKVAMFDIGEIDSGLKIGAHKKNTVEYQKNIDKF 103
Query: 124 NWGYKTEKEDCRACLGLKGQRCPWPSGKGVGGTSLINTMLYTRGNKRNYDDWAK---LGN 180
+ + + P+ + N + RN A +G
Sbjct: 104 VNVIQGQLMSVSVPVNTLVVDTLSPTSWQASTFFVRNGSNPEQDPLRNLSGQAVTRVVGG 163
Query: 181 YGWSYNEVLPYFKKAER---------IQISELQNSSYHGTQGFIGVDYTEYNTPMLDAFL 231
++ P F + +R +E + Y + + ++ + +
Sbjct: 164 MSTAWTCATPRFDREQRPLLVKDDADADDAEW-DRLYTKAESYFQTGTDQFKESIRHNLV 222
Query: 232 QAGMEAGYPLVDYNGKTQ----TGFARAQATLHKRSRRSSAKDYIDPIKKRCNLTVKDSS 287
+ Y + + T + + ++ + + +
Sbjct: 223 LNKLTEEYKG-QRDFQQIPLAATRRSPTFVEWSSANTVFDLQNRPNTDAPEERFNLFPAV 281
Query: 288 FVKKILIDPVTKKACGV--LATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHL 345
++++ + + + + I G +I A +L+AGA ++ +LL+ SG G
Sbjct: 282 ACERVVRNALNSEIESLHIHDLISGDRFEIKADV-YVLTAGAVHNTQLLVNSGFGQLGRP 340
Query: 346 NDLNIPVIKNLRVGENLQEHLAMAGLTFLVNQPI 379
N P +G + E + T + + I
Sbjct: 341 NP-ANPPELLPSLGSYITEQSLVFCQTVMSTELI 373
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD;
1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1
PDB: 3cox_A*
Length = 507
Score = 100 bits (250), Expect = 7e-23
Identities = 51/352 (14%), Positives = 108/352 (30%), Gaps = 59/352 (16%)
Query: 69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLVDIP--VLNTNLILSPLNWG 126
+++G+G GG A RL++ ++E G ++ W
Sbjct: 11 RVPALVIGSGYGGAVAALRLTQ-AGIPTQIVEMGRSWDTPGSDGKIFCGMLNPDKRSMWL 69
Query: 127 YKTEKEDCRACLGLKGQR----------------CPWPSGKGVGGTSLINTMLYTRGNKR 170
+ +G + G+GVGG SL+N + +
Sbjct: 70 ADKTDQPVSNFMGFGINKSIDRYVGVLDSERFSGIKVYQGRGVGGGSLVNGGMAVTPKRN 129
Query: 171 NYDDWAKLGNYGWSYNEVLPYFKKAER-IQISELQNSSYHGTQGFIGVDYTEYNTPMLDA 229
+++ S YF +A + ++ + + + T+ +
Sbjct: 130 YFEEILPS---VDSNEMYNKYFPRANTGLGVNNIDQAWFESTEWY----------KFART 176
Query: 230 FLQAGMEAGYPL------VDYNGKTQTGFARAQATLH--------KRSRRSSAKDYIDPI 275
+ +G+ D+ + + + ++S K Y+
Sbjct: 177 GRKTAQRSGFTTAFVPNVYDFEYMKKEAAGQVTKSGLGGEVIYGNNAGKKSLDKTYLAQA 236
Query: 276 KKRCNLTVKDSSFVKKILIDPVTKKACGVLATIKG---IDHKILARKEVILSAGAFNSPK 332
LT+ V K+ + + + + + K++ V +AG+ + K
Sbjct: 237 AATGKLTITTLHRVTKVAPATGSGYSVTMEQIDEQGNVVATKVVTADRVFFAAGSVGTSK 296
Query: 333 LLMLSGIGPQEHLNDLNIPVIKNLRVGENLQEHL-AMAGLTFLVNQPIGLLQ 383
LL+ Q HL +L + +VGE + M G + G Q
Sbjct: 297 LLVSMKA--QGHLPNL------SSQVGEGWGNNGNIMVGRANHMWDATGSKQ 340
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 59.7 bits (144), Expect = 2e-09
Identities = 99/560 (17%), Positives = 152/560 (27%), Gaps = 224/560 (40%)
Query: 17 LYTIFTLVSYLSSTSLSINVNEFDYAVKSYIEDGIFEQLEYKSSN--------------- 61
L F + Y+SS V +FD + + + FE Y N
Sbjct: 60 LVGKF--LGYVSSLVEPSKVGQFDQVLNLCLTE--FEN-CYLEGNDIHALAAKLLQENDT 114
Query: 62 ---KDQDLLLEYDFIIVGAGPGGCTVANRLSEIPHWKILL--LEAGH------------- 103
K ++L+ Y + A +A R + L + G+
Sbjct: 115 TLVKTKELIKNY----ITA----RIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNT 166
Query: 104 --YFNYLVDI----PVLNTNLI------LSPLNWGYKTEKEDCRACL--GLKGQRCPW-- 147
YF L D+ VL +LI LS L D GL W
Sbjct: 167 DDYFEELRDLYQTYHVLVGDLIKFSAETLSEL----IRTTLDAEKVFTQGLNILE--WLE 220
Query: 148 -----P----------SGKGVGGTSLIN------TMLYTRGNKRNY-------------- 172
P S +G L + + +T G R+Y
Sbjct: 221 NPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTA 280
Query: 173 ------DDWAKLGNYGWSYNEVLPYFKKAERIQ---------ISELQNSSYHGTQGFIGV 217
D W VL F R S L++S + GV
Sbjct: 281 VAIAETDSWESFFVSVRKAITVL--FFIGVRCYEAYPNTSLPPSILEDSLENN----EGV 334
Query: 218 DYTEYNTPML------DAFLQAGME---AGYP--------LVDYNGKTQ---TGFARAQA 257
+PML +Q + + P LV NG +G ++
Sbjct: 335 P-----SPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLV--NGAKNLVVSGPPQSLY 387
Query: 258 TLHKRSRRSSAKDYID----PIKKRCNLTVKDSSFVKKILIDPVT--------KKACGVL 305
L+ R++ A +D P +R K F + L PV A ++
Sbjct: 388 GLNLTLRKAKAPSGLDQSRIPFSER-----K-LKFSNRFL--PVASPFHSHLLVPASDLI 439
Query: 306 ATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIPVIKNLRVGENLQEH 365
D L + V +A D+ IPV + G +L+
Sbjct: 440 NK----D---LVKNNVSFNA--------------------KDIQIPV-YDTFDGSDLRVL 471
Query: 366 LAMAGLTFLVNQPIGLLQDRLIKEMPVHF----AGKLRH----------SLSPITNSETL 411
+V I +PV + K H L +T+
Sbjct: 472 SGSI-SERIV---------DCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKD 521
Query: 412 STNIKTIFAAHHDKINKSGE 431
T ++ I A D N +
Sbjct: 522 GTGVRVIVAGTLDI-NPDDD 540
Score = 41.2 bits (96), Expect = 0.001
Identities = 19/125 (15%), Positives = 40/125 (32%), Gaps = 48/125 (38%)
Query: 363 QEHLAMAGLTFLVNQP-IGLLQDRLIKEMPVHFAGKLR-HSLSP---ITNSETLSTNIKT 417
+++L ++ P IG++Q L H+ + +P + + + + +
Sbjct: 228 KDYLLSIPISC----PLIGVIQ--L-----AHYVVTAKLLGFTPGELRSYLKGATGHSQG 276
Query: 418 IFAAHHDKINKSGEDITIRLIKDLIGILIALALPRKFSTWGKFQVSSSFVVPVWFWLVQN 477
+ A + IA +W F VS + V F++
Sbjct: 277 LVTA----------------------VAIAET-----DSWESFFVSVRKAITVLFFI--- 306
Query: 478 G--CQ 480
G C
Sbjct: 307 GVRCY 311
Score = 40.8 bits (95), Expect = 0.001
Identities = 25/139 (17%), Positives = 49/139 (35%), Gaps = 32/139 (23%)
Query: 347 DL--NIPVIKNL--RVGENLQEHLAMAGLTFLVNQPIGLLQDRLIKEMPVHFAG----KL 398
DL +++ R + ++ + L ++N P + +HF G ++
Sbjct: 1634 DLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNP---------VNLTIHFGGEKGKRI 1684
Query: 399 RHSLSPITNSETLSTNIKT--IFAAHHDKINKSGEDITIRLIKDLIGI---------LIA 447
R + S + + +KT IF +IN+ T R K L+ L+
Sbjct: 1685 RENYSAMIFETIVDGKLKTEKIF----KEINEHSTSYTFRSEKGLLSATQFTQPALTLME 1740
Query: 448 LALPRKFSTWGKFQVSSSF 466
A + G ++F
Sbjct: 1741 KAAFEDLKSKGLIPADATF 1759
Score = 38.9 bits (90), Expect = 0.005
Identities = 34/210 (16%), Positives = 61/210 (29%), Gaps = 88/210 (41%)
Query: 284 KDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQ- 342
K S + + +A G IL ++++ N+P L + G +
Sbjct: 1637 KTSKAAQDVW-----NRADNHFKDTYGFS--IL---DIVI-----NNPVNLTIHFGGEKG 1681
Query: 343 ------------EHLNDLNIPVIKNLRVGENLQEHLAMAGLTFLVNQPIGLLQD------ 384
E + D + K ++ + + EH TF GLL
Sbjct: 1682 KRIRENYSAMIFETIVDGKL---KTEKIFKEINEHST--SYTF--RSEKGLLSATQFTQP 1734
Query: 385 ----------RLIKEM-----PVHFAGKLRHSL-------SPITNSETLSTNIKTIFAAH 422
+K FAG HSL S ++ +S
Sbjct: 1735 ALTLMEKAAFEDLKSKGLIPADATFAG---HSLGEYAALASL---ADVMS------I--- 1779
Query: 423 HDKINKSGEDITIRLIKDLIGILIALALPR 452
E + ++ G+ + +A+PR
Sbjct: 1780 --------ES-LVEVVF-YRGMTMQVAVPR 1799
Score = 35.4 bits (81), Expect = 0.050
Identities = 44/297 (14%), Positives = 86/297 (28%), Gaps = 111/297 (37%)
Query: 151 KGVGGTSLINTM-LYTRGN--KRNYD--DWAKLGNYGWSYNEVL---P-----YF--KKA 195
+G+G M LY + ++ D YG+S +++ P +F +K
Sbjct: 1629 QGMG-------MDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKG 1681
Query: 196 ERI------------------------QISELQNS-SYHGTQGFIGVDYTEYNT-PMLDA 229
+RI +I+E S ++ +G + T+ T P A
Sbjct: 1682 KRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLL--SATQ-FTQP---A 1735
Query: 230 FLQAGMEAGYPLVDYNGKTQTGFARAQATLHKRSRRS----SA----------KDYIDPI 275
A + + G A H S +A + ++ +
Sbjct: 1736 LTLMEK-AAFEDLKSKGLIPADATFAG---H-----SLGEYAALASLADVMSIESLVEVV 1786
Query: 276 KKR----CNLTVKDS---SFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAF 328
R +D S I I+P A ++ + ++ R ++ +
Sbjct: 1787 FYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNY 1846
Query: 329 NSPKLLMLSGIGPQ--------------EHLNDLNIPVIKNLRVG-----ENLQEHL 366
N Q LN + + I + + E ++ HL
Sbjct: 1847 NVE--------NQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHL 1895
>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase
type II family, thiazole synthase, mitochondria DNA
repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} SCOP:
c.3.1.6 PDB: 3fpz_A*
Length = 326
Score = 46.0 bits (108), Expect = 1e-05
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 58 KSSNKDQDLLLEYDFIIVGAGPGGCTVANRLSEI-PHWKILLLEAGHYF 105
KD D D IIVGAG G + A +++ P K+ ++E+
Sbjct: 54 SRYFKDLDKFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAP 102
>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN;
2.25A {Mycobacterium tuberculosis}
Length = 399
Score = 46.3 bits (109), Expect = 2e-05
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLE 100
+D +VG+G G T+A R++ ++L+LE
Sbjct: 7 RFDLFVVGSGFFGLTIAERVATQLDKRVLVLE 38
>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: ADP;
2.40A {Deinococcus radiodurans R1}
Length = 405
Score = 45.8 bits (107), Expect = 2e-05
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 69 EYDFIIVGAGPGGCTVANRLSEI-PHWKILLLEAG 102
+D +++GAG G A L ++ P +LL+E G
Sbjct: 36 AFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEG 70
>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine
dinucleotide BIND isomerase; HET: FDA; 2.25A
{Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A*
3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Length = 513
Score = 44.9 bits (105), Expect = 5e-05
Identities = 10/35 (28%), Positives = 20/35 (57%)
Query: 70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104
D +++GAGP G A RL++I +++++
Sbjct: 11 VDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNET 45
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex,
biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis
thaliana} SCOP: c.3.1.6
Length = 284
Score = 43.5 bits (102), Expect = 9e-05
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 62 KDQDLLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 105
D E D ++VGAG G + A +S+ P+ ++ ++E
Sbjct: 32 TDMITYAETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSP 75
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.5 bits (104), Expect = 9e-05
Identities = 84/551 (15%), Positives = 155/551 (28%), Gaps = 169/551 (30%)
Query: 52 FEQLEYKSSNKD------------------QDLLL------EYDFIIVGAGPGGCTVANR 87
FE E++ KD QD+ E D II + R
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHII--MSKDAVSGTLR 66
Query: 88 LSEIPHWKILL---------LEAGHYFNY--LVD-------IPVL-------------NT 116
L W +L +E NY L+ P + N
Sbjct: 67 L----FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122
Query: 117 NLILSPLNWGYKTEKEDCRACLGLKGQRCPWPS--G-KGVGGTSLINTMLYTRGNKRNYD 173
N + + N R L L+ + G G G T + + + + D
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQAL-LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD 181
Query: 174 D---WAKLGNYGWSYNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTEYNTPMLDAF 230
W L N E + + LQ Y + N +
Sbjct: 182 FKIFWLNLKNC-----------NSPETV-LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229
Query: 231 LQAG-----MEAGYP---LV-D--YNGKTQTGF---ARAQATLHKRSRRSSAKDYIDPIK 276
+QA Y LV N K F + T +R D++
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT----TRFKQVTDFLSA-A 284
Query: 277 KRCNLTVKDSSFVKKILIDPVTK-KACGVLATIKGIDHKILARKEVILSAGAFNSPKLLM 335
++++ S +T + +L + L R EV+ + +P
Sbjct: 285 TTTHISLDHHS-------MTLTPDEVKSLLLKYLDCRPQDLPR-EVLTT-----NP--RR 329
Query: 336 LSGIGP--QEHLN------DLNIP----VIK----NLRVGENLQEH---LAMAGLTFL-- 374
LS I ++ L +N +I+ L E ++ L++ F
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE-YRKMFDRLSV----FPPS 384
Query: 375 VNQPIGLLQ---DRLIKEMPVHFAGKL-RHSLSPITNSETLSTNIKTIFAAHHDKINKSG 430
+ P LL +IK + KL ++SL E+ +I + + + K
Sbjct: 385 AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI----SIPSIYLELKVKLE 440
Query: 431 EDITIRLIKDLIGILIALALPRKFSTWGKFQVSSSFVVPV----WFWLVQ---NGCQMSG 483
+ + + ++ +P+ F + + P ++ + +
Sbjct: 441 NEYALH--RSIVD---HYNIPKTFDSDD-------LIPPYLDQYFYSHIGHHLKNIEHPE 488
Query: 484 KWSNL-YWYTD 493
+ + + D
Sbjct: 489 RMTLFRMVFLD 499
Score = 36.4 bits (83), Expect = 0.023
Identities = 35/216 (16%), Positives = 64/216 (29%), Gaps = 61/216 (28%)
Query: 30 TSLSINVNEFDYAVKSYIEDGIFEQLEYKSSNKDQDLLLEYDFIIVGAGPGGCTVANRLS 89
T ++++V Y V+ ++ IF L K+ N + +L ++ P + ++ S
Sbjct: 164 TWVALDVCL-SYKVQCKMDFKIF-WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221
Query: 90 EIP---HW-----KILLLEAGH-----------------YFNY----LV---DIPVLN-- 115
I H + LL + FN L+ V +
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFL 281
Query: 116 -----TNLILSPLNWGYKTEKED---CRACLGLKGQRCPWPSGKGVG--GTSLINTMLYT 165
T++ L + T E L + Q P S+I +
Sbjct: 282 SAATTTHISLDHHSMTL-TPDEVKSLLLKYLDCRPQDLP-REVLTTNPRRLSIIAESI-- 337
Query: 166 RGNKRNYDDWAKLGNYGWSYNEVLPYFKKAERIQIS 201
R +D+W + K I+ S
Sbjct: 338 RDGLATWDNWKHVNCD-----------KLTTIIESS 362
>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase;
HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB:
3hdy_A* 3he3_A* 3mj4_A*
Length = 397
Score = 43.6 bits (102), Expect = 1e-04
Identities = 11/33 (33%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEA 101
+D++IVGAG G +A RL+ ++L+++
Sbjct: 29 GFDYLIVGAGFAGSVLAERLASS-GQRVLIVDR 60
>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein;
HET: AHZ; 2.70A {Neurospora crassa}
Length = 344
Score = 43.2 bits (101), Expect = 1e-04
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
Query: 39 FDYAVKSYIEDGIFEQLEYKSSNKDQDLLLEYDFIIVGAGPGGCTVANRLSEI-PHWKIL 97
F +S + + Y D D E D +IVGAG G + A LS + P +I
Sbjct: 54 FSPIRESTVSRAMTR--RY---FADLDAHAETDIVIVGAGSCGLSAAYVLSTLRPDLRIT 108
Query: 98 LLEAGHYF 105
++EAG
Sbjct: 109 IVEAGVAP 116
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1,
geranylgeranyl bacteriochlorophyll reductase- like FIXC
homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma
acidophilum dsm 1728} PDB: 3oz2_A*
Length = 397
Score = 43.1 bits (102), Expect = 2e-04
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 105
YD ++VG GPGG T A ++ K L++E
Sbjct: 4 TYDVLVVGGGPGGSTAARYAAKYGL-KTLMIEKRPEI 39
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase,
isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP:
c.4.1.3 d.16.1.7
Length = 367
Score = 42.0 bits (98), Expect = 3e-04
Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEA 101
YD+IIVG+G G AN L ++ + K+L++E
Sbjct: 2 YDYIIVGSGLFGAVCANELKKL-NKKVLVIEK 32
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal
membrane precursor, like 2 geranylgeranylglyceryl
phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius}
PDB: 3atq_A*
Length = 453
Score = 41.7 bits (98), Expect = 4e-04
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104
L+YD +I+G G G + A +LS KILL+++ +
Sbjct: 5 LKYDVLIIGGGFAGSSAAYQLSRRGL-KILLVDSKPW 40
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein
structure initiative, northeast structural genomics
consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}
Length = 421
Score = 41.7 bits (98), Expect = 5e-04
Identities = 9/37 (24%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 69 EYDFIIVGAGPGGCTVANRLSEIPH-WKILLLEAGHY 104
+ D +++GAGP G A+ +++ +K+ ++E +
Sbjct: 5 KVDVLVIGAGPAGTVAASLVNK--SGFKVKIVEKQKF 39
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase,
lipopolysaccharide biosynthesi; HET: FAD; 2.0A
{Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB:
2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*
Length = 384
Score = 41.2 bits (96), Expect = 5e-04
Identities = 8/33 (24%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEA 101
+IVGAG G + +L+E ++ +++
Sbjct: 3 SKKILIVGAGFSGAVIGRQLAEK-GHQVHIIDQ 34
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine
dinucleotide, isomerase; HET: FAD UDP; 2.25A
{Trypanosoma cruzi} PDB: 4dsh_A*
Length = 484
Score = 41.4 bits (96), Expect = 6e-04
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104
+I+GAGP G A RL+E+ + L E
Sbjct: 10 PKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDT 44
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Length = 512
Score = 41.1 bits (96), Expect = 8e-04
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104
+D I++G GPGG T+A+ ++ ++LLLE +
Sbjct: 7 VFDLIVIGGGPGGSTLASFVAM-RGHRVLLLEREAF 41
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A
{Aeropyrum pernix} PDB: 3vqr_A*
Length = 448
Score = 40.5 bits (95), Expect = 9e-04
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103
+D+++VGAG G A L +L+++AGH
Sbjct: 23 RFDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDAGH 57
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol
biosynthesis, halogenation reaction, structural
genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Length = 591
Score = 38.4 bits (89), Expect = 0.005
Identities = 7/37 (18%), Positives = 12/37 (32%), Gaps = 3/37 (8%)
Query: 69 EYDFIIVGAGPGGCTVANRLSEIPH-WKILLLEAGHY 104
I+G GP G L + + + E +
Sbjct: 23 RSKVAIIGGGPAGSVAGLTLHK--LGHDVTIYERSAF 57
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding,
para-hydroxy-benzoate-hydroxylase fold (PHBH- fold),
monotopic membrane-binding domain; HET: FAD OMN TON;
2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Length = 504
Score = 37.8 bits (87), Expect = 0.007
Identities = 9/46 (19%), Positives = 15/46 (32%), Gaps = 1/46 (2%)
Query: 59 SSNKDQDLLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104
S + ++GAG G A +L + + EA
Sbjct: 3 PSAGEDKHSSAKRVAVIGAGVSGLAAAYKLKI-HGLNVTVFEAEGK 47
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT
structure initiative, northeast structural genomics
consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}
Length = 369
Score = 37.5 bits (88), Expect = 0.009
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 105
+ D I++GAG G +A L+ ++L+ EA
Sbjct: 4 DIDCIVIGAGVVGLAIARALAA-GGHEVLVAEAAEGI 39
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase,
dehydogenase, steroid catabolism; HET: FAD; 1.60A
{Rhodococcus jostii} PDB: 4at2_A*
Length = 510
Score = 37.7 bits (88), Expect = 0.009
Identities = 19/114 (16%), Positives = 42/114 (36%), Gaps = 5/114 (4%)
Query: 218 DYTEYNTPMLDAFLQAGMEAGYPLVDYNGKTQTGFARAQATLHKRSRRSSAKDYIDPIKK 277
+ P D + +G E P + Q + + + P+ +
Sbjct: 152 GEPGWEPPFDDGLMYSGGENAAPF-NEIAAPAPRGHVPQMDGKRTGEKGGGYMLMKPLVE 210
Query: 278 RC---NLTVKDSSFVKKILIDPVTKKACGVLATIKGIDHKILARKEVILSAGAF 328
+ + V+ ++ D T + G++A G + + AR+ V+L+ G+F
Sbjct: 211 TAEKLGVRAEYDMRVQTLVTDD-TGRVVGIVAKQYGKEVAVRARRGVVLATGSF 263
Score = 30.4 bits (69), Expect = 1.4
Identities = 6/28 (21%), Positives = 12/28 (42%)
Query: 58 KSSNKDQDLLLEYDFIIVGAGPGGCTVA 85
+S+ + E D ++ G G G +
Sbjct: 30 RSATTVTEWDYEADVVVAGYGIAGVAAS 57
>1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding subunit);
electron transport(flavocytochrome); HET: FAD HEM; 2.53A
{Allochromatium vinosum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 401
Score = 37.4 bits (87), Expect = 0.010
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 73 IIVGAGPGGCTVANRLSE-IPHWKILLLEAGHYFNY 107
++VG G GG T A + P ++ L+E +
Sbjct: 6 VVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYT 41
>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium,
SGC, trans PF10_0345, protein transport; 1.85A
{Plasmodium falciparum 3D7}
Length = 475
Score = 37.2 bits (85), Expect = 0.010
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 105
YD II+G G C ++ LS IL+L+ Y+
Sbjct: 20 HYDVIILGTGLKECILSGLLSHYGKK-ILVLDRNPYY 55
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM
FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3
c.3.1.4 d.168.1.1
Length = 566
Score = 37.0 bits (86), Expect = 0.014
Identities = 18/98 (18%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
Query: 242 VDYNGKTQTGFARAQATLHKRSRRSSAKDYIDPIKKRC---NLTVKDSSFVKKILIDPVT 298
+ + ++G AR T +SS + ID ++K + + +S V K++++
Sbjct: 223 ANLDDLKRSGGARVDRTHRPHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLVVND-D 281
Query: 299 KKACGVLATIKGIDHKILARKEVILSAGAF-NSPKLLM 335
G + K + ++ K V+L+ G + + +++
Sbjct: 282 HSVVGAVVHGKHTGYYMIGAKSVVLATGGYGMNKEMIA 319
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase,
inhibitor binding, rasagiline, enantioselectivity,
oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP:
c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A*
1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A*
2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A*
2v61_A* 2vrl_A* ...
Length = 520
Score = 36.7 bits (85), Expect = 0.015
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEA 101
+ D ++VG G G A L + +++LEA
Sbjct: 4 KCDVVVVGGGISGMAAAKLLHDSGL-NVVVLEA 35
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX),
oxidative demethylation of N-methyl-L-tryptophan, FAD,
flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Length = 372
Score = 36.2 bits (84), Expect = 0.020
Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG 102
++YD II+G+G G + +L+ +A
Sbjct: 1 MKYDLIIIGSGSVGAAAGYYATRA-GLNVLMTDAH 34
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for
structural genomics, JCSG, protein structure INI PSI-2;
HET: FAD; 2.06A {Exiguobacterium sibiricum}
Length = 475
Score = 36.2 bits (83), Expect = 0.024
Identities = 13/36 (36%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 70 YDFIIVGAGPGGCTVANRLS-EIPHWKILLLEAGHY 104
+IVG G G A P I LLEAG
Sbjct: 5 KRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGER 40
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc
genomics, joint center for structural genomics, JCSG;
HET: FAD UNL; 2.40A {Staphylococcus aureus}
Length = 369
Score = 35.9 bits (83), Expect = 0.025
Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 11/53 (20%)
Query: 69 EYDFIIVGAGPGGCTVANRLSE--IPHWKILLLEAG-------HYFNYLVDIP 112
+ I+GAG G +A L + I +++LE G H+ I
Sbjct: 4 HHKVAIIGAGAAGIGMAITLKDFGITD--VIILEKGTVGHSFKHWPKSTRTIT 54
>3h28_A Sulfide-quinone reductase; monotopic membrane protein,
flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ
LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A*
3hyv_A* 3hyw_A* 3hyx_A*
Length = 430
Score = 35.8 bits (83), Expect = 0.026
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 73 IIVGAGPGGCTVANRLSE-IPHWKILLLEAGHYFNY 107
+++G G GG A L +P KI L+ YF +
Sbjct: 6 VVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGF 41
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex,
oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis}
SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Length = 382
Score = 35.6 bits (83), Expect = 0.030
Identities = 9/34 (26%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG 102
Y+ +++G G G +A L++ + L E+G
Sbjct: 17 HYEAVVIGGGIIGSAIAYYLAKE-NKNTALFESG 49
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis,
chlorophyll biosynthesis, oxidoreductase, HAEM
biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A
{Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*
Length = 478
Score = 35.7 bits (82), Expect = 0.035
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104
+ +VG G G VA+ L +LLE+
Sbjct: 17 MNVAVVGGGISGLAVAHHLRS-RGTDAVLLESSAR 50
>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution,
hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3
d.16.1.6 PDB: 1lv0_A* 1gnd_A
Length = 433
Score = 35.6 bits (81), Expect = 0.039
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104
EYD I++G G C ++ +S K+L ++ Y
Sbjct: 6 EYDVIVLGTGLTECILSGIMSV-NGKKVLHMDRNPY 40
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD;
HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB:
2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Length = 424
Score = 35.2 bits (81), Expect = 0.045
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 105
+ I+GAGP G L + +LE +
Sbjct: 6 DSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHV 42
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate
porphyria disease, VP oxidoreductase-oxidoreductase
inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}
Length = 477
Score = 35.4 bits (81), Expect = 0.046
Identities = 8/33 (24%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 73 IIVGAGPGGCTVANRLSEI-PHWKILLLEAGHY 104
+++G G G + LS K++L+E+
Sbjct: 6 VVLGGGISGLAASYHLSRAPCPPKVVLVESSER 38
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid,
amadoriase, deglycation, fructosamine oxidase; HET: MSE
FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Length = 438
Score = 34.8 bits (80), Expect = 0.059
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104
+IVGAG G + A L+ + + +L+
Sbjct: 6 SSSLLIVGAGTWGTSTALHLARRGYTNVTVLDPYPV 41
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold,
oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens}
PDB: 3h8i_A*
Length = 409
Score = 34.7 bits (80), Expect = 0.064
Identities = 5/37 (13%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 73 IIVGAGPGGCTVANRLSEI--PHWKILLLEAGHYFNY 107
+++G G T A L + + ++ + +
Sbjct: 5 LVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYF 41
>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis,
FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP:
a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*
Length = 540
Score = 34.5 bits (80), Expect = 0.073
Identities = 9/31 (29%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLL 99
D +I+G+G G ++A RL+ ++++L
Sbjct: 8 SCDVLIIGSGAAGLSLALRLA--DQHQVIVL 36
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex,
oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus
horikoshii}
Length = 382
Score = 34.4 bits (80), Expect = 0.074
Identities = 7/34 (20%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG 102
+ + +++G G G T+A+ L++ ++ ++E
Sbjct: 5 KSEIVVIGGGIVGVTIAHELAKR-GEEVTVIEKR 37
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4,
X-RAY, structure, PSI, protein structure initiative;
HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Length = 336
Score = 34.2 bits (77), Expect = 0.075
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 71 DFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103
I+G G G + A L+ H ++ L +
Sbjct: 4 PIAIIGTGIAGLSAAQALTAAGH-QVHLFDKSR 35
>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G*
3cpi_G 3cph_G 3cpj_G*
Length = 453
Score = 34.4 bits (78), Expect = 0.082
Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 60 SNKDQDLL-LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYF 105
+ DQ+ + +YD I++G G C ++ LS + K+L ++ ++
Sbjct: 1 GHMDQETIDTDYDVIVLGTGITECILSGLLS-VDGKKVLHIDKQDHY 46
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates,
flavoenzymes, nicotine degradation, oxidoreductase; HET:
FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB:
3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X*
3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Length = 431
Score = 34.4 bits (79), Expect = 0.085
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEA 101
YD I+VG G G A L+ K+LLLE
Sbjct: 2 YDAIVVGGGFSGLKAARDLTN-AGKKVLLLEG 32
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG
FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8
d.58.1.6 PDB: 2gmj_A*
Length = 584
Score = 34.4 bits (79), Expect = 0.088
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 68 LEYDFIIVGAGPGGCTVANRLSEI-----PHWKILLLEAG 102
E D +IVGAGP G + A RL ++ ++ L+E
Sbjct: 34 EEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKA 73
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm,
FAD, flavoprotein, oxidoreductase, porphyrin
biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}
Length = 470
Score = 34.2 bits (78), Expect = 0.10
Identities = 8/42 (19%), Positives = 16/42 (38%), Gaps = 5/42 (11%)
Query: 69 EYDFIIVGAGPGGCTVANRLS-----EIPHWKILLLEAGHYF 105
+ +I+G G G A + + ++ L+EA
Sbjct: 5 KKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRV 46
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET:
FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A*
3nyf_A* 3sm8_A*
Length = 381
Score = 33.7 bits (78), Expect = 0.11
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNY 107
E D++++GAG G + LS H ++++LE Y
Sbjct: 9 EADYLVIGAGIAGASTGYWLSA--HGRVVVLEREAQPGY 45
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A,
flavin adenine dinucleotide, selenomethionine, F
flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis
str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Length = 480
Score = 34.0 bits (79), Expect = 0.12
Identities = 8/38 (21%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 72 FIIVGAGPGGCTVANRLSEI-PHWKILLLEAGHYFNYL 108
++I+G G + A ++ + ++ LE G ++Y
Sbjct: 39 YVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYA 76
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone
oxidoreductase, Cys356Ala variant, integral membrane
protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus
ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A*
3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A*
3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Length = 437
Score = 33.6 bits (77), Expect = 0.13
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 73 IIVGAGPGGCTVANRLSEI--PHWKILLLEAGHYFNY 107
+I+GAG GG A + E ++ L+ A YF +
Sbjct: 8 VILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQF 44
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET:
FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A*
2q6u_A*
Length = 397
Score = 33.6 bits (77), Expect = 0.15
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103
YD ++VG GP G A +++E ++L+LE
Sbjct: 5 YDVVVVGGGPVGLATAWQVAER-GHRVLVLERHT 37
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin
regulator, histone inhibitor binding, methylation,
nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A
{Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A*
2xas_A* 2com_A
Length = 852
Score = 33.8 bits (76), Expect = 0.15
Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 8/78 (10%)
Query: 24 VSYLSSTSLSINVNEFDYAVKSYIEDGIFEQLEYKSSNKDQDLLLEYDFIIVGAGPGGCT 83
Y S T L V+ + I GI+++++ + K II+G+G G
Sbjct: 240 APYNSDTVLVHRVHSY-LERHGLINFGIYKRIKPLPTKKT------GKVIIIGSGVSGLA 292
Query: 84 VANRLSEIPHWKILLLEA 101
A +L + LLEA
Sbjct: 293 AARQLQSFGM-DVTLLEA 309
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD;
1.75A {Pseudomonas aeruginosa}
Length = 399
Score = 33.4 bits (77), Expect = 0.16
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEA 101
D +I G G GG +A L +++++E
Sbjct: 6 HIDVLINGCGIGGAMLAYLLGRQ-GHRVVVVEQ 37
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA,
persulfide reductase, rhodanese; HET: COA FAD; 1.99A
{Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Length = 565
Score = 33.7 bits (78), Expect = 0.16
Identities = 10/37 (27%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 73 IIVGAGPGGCTVANRLSEI-PHWKILLLEAGHYFNYL 108
+I+G GG + A R + +I++ E G Y ++
Sbjct: 5 LIIGGVAGGASAAARARRLSETAEIIMFERGEYVSFA 41
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD;
2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Length = 572
Score = 33.5 bits (77), Expect = 0.17
Identities = 19/103 (18%), Positives = 37/103 (35%), Gaps = 15/103 (14%)
Query: 242 VDYNGKTQTGFARAQATLHKRSRRSSAKD-----YIDPIKKRC---NLTVKDSSFVKKIL 293
D + G A RS R + + ++ +S V +IL
Sbjct: 228 ADMTDVGRMGGA-----SVNRSHRPTGGAGVGAHVAQVLWDNAVKRGTDIRLNSRVVRIL 282
Query: 294 IDPVTKKACGVLATIKGIDHKILARKEVILSAGAF-NSPKLLM 335
D + K GVL + + ++ V+++AG F + + +
Sbjct: 283 EDA-SGKVTGVLVKGEYTGYYVIKADAVVIAAGGFAKNNERVS 324
Score = 30.5 bits (69), Expect = 1.6
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 58 KSSNKDQDLLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLE 100
+ + D +I+G+G G A + K++LLE
Sbjct: 115 QDKAIAAGVKETTDVVIIGSGGAGLAAAVSARD-AGAKVILLE 156
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A
{Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A*
2yg7_A* 3rha_A*
Length = 453
Score = 33.6 bits (77), Expect = 0.18
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEA 101
L+ D IVGAGP G A L + + ++EA
Sbjct: 4 LQRDVAIVGAGPSGLAAATALRKA-GLSVAVIEA 36
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome,
transcription, LSD1, alternative splicing, chromatin
regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens}
SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A*
3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A*
2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Length = 662
Score = 33.3 bits (75), Expect = 0.18
Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 8/78 (10%)
Query: 24 VSYLSSTSLSINVNEFDYAVKSYIEDGIFEQLEYKSSNKDQDLLLEYDFIIVGAGPGGCT 83
Y S T L V+ + I GI+++++ + K II+G+G G
Sbjct: 69 APYNSDTVLVHRVHSY-LERHGLINFGIYKRIKPLPTKK------TGKVIIIGSGVSGLA 121
Query: 84 VANRLSEIPHWKILLLEA 101
A +L + LLEA
Sbjct: 122 AARQLQSFGM-DVTLLEA 138
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide
oxidoreductase class I, rhodan coenzyme A, flavin
adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus
anthracis} PDB: 3icr_A* 3ict_A*
Length = 588
Score = 33.3 bits (77), Expect = 0.18
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 72 FIIVGAGPGGCTVANRLSEI-PHWKILLLEAGHYFNYL 108
++VG GG +VA RL + +I+++E G Y ++
Sbjct: 39 IVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYISFA 76
>1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.54A
{Staphylococcus aureus}
Length = 438
Score = 33.2 bits (77), Expect = 0.20
Identities = 9/37 (24%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 73 IIVGAGPGGCTVANRLSEI-PHWKILLLEAGHYFNYL 108
++VGA GG T A+++ + I++ E ++
Sbjct: 5 VVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFA 41
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase;
structural genomics, PSI-2, protein structur initiative;
2.30A {Desulfovibrio vulgaris}
Length = 472
Score = 33.3 bits (77), Expect = 0.20
Identities = 7/37 (18%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 73 IIVGAGPGGCTVANRLSEI-PHWKILLLEAGHYFNYL 108
+++GA G A R + P + +++ +Y
Sbjct: 7 VVIGAVALGPKAACRFKRLDPEAHVTMIDQASRISYG 43
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase,
structural genomics structure initiative; 2.75A
{Pyrococcus horikoshii}
Length = 449
Score = 33.2 bits (77), Expect = 0.20
Identities = 10/37 (27%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 73 IIVGAGPGGCTVANRLSEI-PHWKILLLEAGHYFNYL 108
+I+G G G + A+R+ + P W + + EA + ++
Sbjct: 7 VIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHA 43
>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266,
NESG, PAR240, structural genomics, PSI-2; HET: FAD;
1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2
d.16.1.2 PDB: 2rgj_A*
Length = 410
Score = 33.1 bits (76), Expect = 0.21
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 73 IIVGAGPGGCTVANRLSEIPHWKILLLEA 101
+I GAG GG + A L + K+ LLE+
Sbjct: 8 LIAGAGIGGLSCALALHQAGIGKVTLLES 36
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR
initiative, midwest center for structural genomics; HET:
FAD; 2.15A {Agrobacterium tumefaciens}
Length = 297
Score = 32.9 bits (76), Expect = 0.21
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 13/42 (30%)
Query: 69 EYDFIIVGAGPGGCTVA------NRLSEIPHWKILLLEAGHY 104
++D II+G G + A + ILL++AG
Sbjct: 2 KFDVIIIGGSYAGLSAALQLGRARK-------NILLVDAGER 36
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A
{Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A*
1f8w_A*
Length = 447
Score = 33.2 bits (77), Expect = 0.22
Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 73 IIVGAGPGGCTVANRLSEI-PHWKILLLEAGHYFNYL 108
I++G+ GG L + P +I E G + ++L
Sbjct: 4 IVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFL 40
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural
genomics, PSI-2, protein structure initiative; HET: FAD;
2.60A {Enterococcus faecalis}
Length = 452
Score = 33.2 bits (77), Expect = 0.22
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 72 FIIVGAGPGGCTVANRLSEI-PHWKILLLEAGHYFNYL 108
+I+GA G + A + P +I L++ YL
Sbjct: 5 IVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYL 42
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A
{Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A*
3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A*
3cnt_B* 1yy5_A* 1xpq_A*
Length = 516
Score = 33.2 bits (75), Expect = 0.23
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEA 101
+ II+GAG G A+ L + L+LEA
Sbjct: 8 KKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEA 40
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved
protein, rossmann fold, structural genomics, NPPSFA;
HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Length = 180
Score = 32.1 bits (74), Expect = 0.23
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 70 YDFIIVGAGPGGCTVA 85
+D I+VG GP G + A
Sbjct: 2 WDVIVVGGGPSGLSAA 17
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme,
electron transfer, folate-ME enzyme, oxidoreductase;
HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia}
PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B*
3ada_B*
Length = 405
Score = 33.0 bits (76), Expect = 0.25
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 69 EYDFIIVGAGPGGCTVANRLSEIPHWK-ILLLEAGH 103
YD IIVG G G A L++ + +LE G
Sbjct: 21 SYDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGW 56
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A
{Lactobacillus sanfranciscensis}
Length = 452
Score = 32.9 bits (76), Expect = 0.26
Identities = 7/37 (18%), Positives = 12/37 (32%), Gaps = 1/37 (2%)
Query: 73 IIVGAGPGGCTVANRLSEI-PHWKILLLEAGHYFNYL 108
I+VG G + P + E ++L
Sbjct: 4 IVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISFL 40
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD;
2.72A {Stenotrophomonas maltophilia}
Length = 357
Score = 32.7 bits (75), Expect = 0.28
Identities = 7/36 (19%), Positives = 16/36 (44%), Gaps = 5/36 (13%)
Query: 69 EYDFIIVGAGPGGCTVANRLSE--IPHWKILLLEAG 102
D +++G G G + L + + ++L+A
Sbjct: 3 SVDVVVIGGGQSGLSAGYFLRRSGLSY---VILDAE 35
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent
N-hydroxylating monooxygenase, CLAS flavin dependent
monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A
{Pseudomonas aeruginosa} PDB: 3s61_A*
Length = 463
Score = 32.7 bits (74), Expect = 0.28
Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 4/40 (10%)
Query: 70 YDFIIVGAGPGGCTVANRLSEIPHW----KILLLEAGHYF 105
+D I VG GP +A L E ++L L+ +
Sbjct: 31 HDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDY 70
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase,
enantioselectivity, directed evolution variant; HET:
FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*
Length = 495
Score = 32.6 bits (74), Expect = 0.29
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEA 101
+D I++G G G T L+ +K LLLEA
Sbjct: 40 WDVIVIGGGYCGLTATRDLTV-AGFKTLLLEA 70
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.30
Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 11/41 (26%)
Query: 196 ERIQISELQNSSYHGTQGFIGVDYTEYNTPMLDAFLQAGME 236
E+ + +LQ S + + Y + + P L A ++A ME
Sbjct: 18 EKQALKKLQAS--------LKL-YADDSAPAL-A-IKATME 47
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein;
HET: FAD; 2.35A {Thermoplasma acidophilum}
Length = 319
Score = 32.5 bits (75), Expect = 0.30
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 69 EYDFIIVGAGPGGCTVA 85
++D +IVGAG G + A
Sbjct: 16 DFDVVIVGAGAAGFSAA 32
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis
baeyer-villiger oxidation green CH monooxygenase,
oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP}
PDB: 3gwd_A* 3ucl_A*
Length = 540
Score = 32.5 bits (75), Expect = 0.30
Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 10/54 (18%)
Query: 69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH------YFN-Y---LVDIP 112
D +++GAG GG ++L + + Y+N Y L D
Sbjct: 8 TVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGALSDTE 61
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD
NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A*
4aos_A* 4ap1_A*
Length = 549
Score = 32.6 bits (75), Expect = 0.31
Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 11/54 (20%)
Query: 69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH------YFN-Y---LVDIP 112
YD ++VGAG G +R + EA Y+N Y D+
Sbjct: 21 SYDVVVVGAGIAGLYAIHRFRSQ-GLTVRAFEAASGVGGVWYWNRYPGARCDVE 73
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD;
1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A*
3up4_A* 3up5_A*
Length = 545
Score = 32.6 bits (75), Expect = 0.33
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 11/54 (20%)
Query: 69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH------YFN-Y---LVDIP 112
D +++GAG G A +++ K+L +EAG Y+N Y +D
Sbjct: 9 ALDAVVIGAGVTGIYQAFLINQ-AGMKVLGIEAGEDVGGTWYWNRYPGCRLDTE 61
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor
2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus
SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A*
1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A*
3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A*
1l9d_A* 1zov_A*
Length = 389
Score = 32.3 bits (74), Expect = 0.34
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103
+D I+VGAG G +L++ K LL++A
Sbjct: 4 FDVIVVGAGSMGMAAGYQLAK-QGVKTLLVDAFD 36
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A
{Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A*
2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Length = 542
Score = 32.2 bits (74), Expect = 0.45
Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 11/67 (16%)
Query: 56 EYKSSNKDQDLLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH------YFN-Y- 107
+ + + E D ++VGAG G RL E + ++E Y+N Y
Sbjct: 3 GQTTVDSRRQPPEEVDVLVVGAGFSGLYALYRLRE-LGRSVHVIETAGDVGGVWYWNRYP 61
Query: 108 --LVDIP 112
DI
Sbjct: 62 GARCDIE 68
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin
contain oxidoreductase, monoamine oxidase, NAD,
extracellular, oxidoreductase; HET: FAD; 2.50A {Homo
sapiens}
Length = 342
Score = 32.0 bits (71), Expect = 0.45
Identities = 8/34 (23%), Positives = 12/34 (35%), Gaps = 2/34 (5%)
Query: 71 DFIIVGAGPGGCTVANRLSE--IPHWKILLLEAG 102
+IVGAG G A L + + +
Sbjct: 3 QVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKA 36
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide
binding, FAD, flavoprotein, oxidoreductase; HET: FAD;
1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Length = 323
Score = 31.7 bits (73), Expect = 0.46
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 69 EYDFIIVGAGPGGCTVA 85
++D IIVG GP A
Sbjct: 15 KFDVIIVGLGPAAYGAA 31
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate
hydrogen bond, nucleotide binding fold, thior reductase,
thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium}
SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A
1zyp_A
Length = 521
Score = 32.3 bits (74), Expect = 0.46
Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 51 IFEQLEYKSSNKDQDLLLE---YDFIIVGAGPGGCTVA 85
I +++ + + + L + YD +IVG+GP G A
Sbjct: 191 IVAKVDTGAEKRAAEALNKRDAYDVLIVGSGPAGAAAA 228
>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for
structural genomics, secsg, hyperthermoph protein
structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus
furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 367
Score = 31.8 bits (73), Expect = 0.51
Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 73 IIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNY 107
+IVG GPGG +A +LS+ +++ +++ Y
Sbjct: 12 VIVGNGPGGFELAKQLSQ--TYEVTVIDKEPVPYY 44
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid,
national institute of allergy AN infectious diseases;
HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Length = 304
Score = 31.7 bits (73), Expect = 0.52
Identities = 8/54 (14%), Positives = 17/54 (31%), Gaps = 21/54 (38%)
Query: 69 EYDFIIVGAGPGGCTVA------NRLSEIPHWKILLLEAG--------HYFNYL 108
D ++GAGP G + + +I L + + ++
Sbjct: 6 YIDCAVIGAGPAGLNASLVLGRARK-------QIALFDNNTNRNRVTQNSHGFI 52
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor;
HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP:
c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A*
3q6j_A*
Length = 523
Score = 31.9 bits (73), Expect = 0.52
Identities = 13/73 (17%), Positives = 19/73 (26%), Gaps = 25/73 (34%)
Query: 58 KSSNKDQDLLLEYDFIIVGAGPGGCTVANRLSE-----------------------IPHW 94
N D++ EYD I +G G G + L +PH
Sbjct: 32 VIYNVDENDPREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHNACVPH- 90
Query: 95 KILLLEAGHYFNY 107
L +
Sbjct: 91 H-LFSDCAAELML 102
>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A
{Desulfovibrio gigas}
Length = 662
Score = 31.9 bits (72), Expect = 0.56
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 5/41 (12%)
Query: 68 LEYDFIIVGAGPGGCTVANRLSEI-----PHWKILLLEAGH 103
D ++VG G G C A P KILL++
Sbjct: 21 HSVDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKAS 61
>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG,
structural genomics, PSI-2, prote structure initiative;
HET: FAD; 2.15A {Vibrio parahaemolyticus}
Length = 549
Score = 31.9 bits (72), Expect = 0.56
Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 68 LEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103
L I++G GP G L++ + +++E G
Sbjct: 106 LTERPIVIGFGPCGLFAGLVLAQ-MGFNPIIVERGK 140
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride
transfer mechanism, GR2-family, flavoenzyme, FAD
containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB:
2jb1_A* 2jb2_A* 2jb3_A*
Length = 489
Score = 31.8 bits (72), Expect = 0.57
Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEA 101
+ +++G GP G A L + +K+ +LEA
Sbjct: 12 HSVVVLGGGPAGLCSAFELQKA-GYKVTVLEA 42
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome,
mesaconate, oxidoreductase; HET: HEM FAD; 1.50A
{Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A*
1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A*
1q9i_A* 1lj1_A*
Length = 571
Score = 32.0 bits (73), Expect = 0.58
Identities = 12/86 (13%), Positives = 30/86 (34%), Gaps = 10/86 (11%)
Query: 259 LHKRSRRSSAKD-----YIDPIKKRC---NLTVKDSSFVKKILIDPVTKKACGVLATIKG 310
R+ R + + + N+ ++ ++ ++L D G+L
Sbjct: 240 SVNRAHRPTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDD-KGTVKGILVKGMY 298
Query: 311 IDHKILARKEVILSAGAF-NSPKLLM 335
+ + VIL+ G F + + +
Sbjct: 299 KGYYWVKADAVILATGGFAKNNERVA 324
Score = 29.3 bits (66), Expect = 3.7
Identities = 9/32 (28%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLE 100
D ++VG+G G + A ++ K++L+E
Sbjct: 126 TVDVVVVGSGGAGFSAAISATD-SGAKVILIE 156
>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A
{Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4
d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*
Length = 643
Score = 31.7 bits (72), Expect = 0.62
Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 53 EQLEYKSSNKDQDLLLEYDFIIVGAGPGGCTVANRLSEI---PHWKILLLE 100
++ E +++ ++E D +I+G G GC A + K+ L+E
Sbjct: 6 KKYELYKADEVPTEVVETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVE 56
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD,
disulphi oxidoreductase, oxidoreductase; HET: FAD;
1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5
Length = 310
Score = 31.3 bits (72), Expect = 0.65
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 70 YDFIIVGAGPGGCTVA 85
YD +IVG+GP G A
Sbjct: 2 YDVLIVGSGPAGAAAA 17
>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement,
oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum}
SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*
Length = 665
Score = 31.5 bits (71), Expect = 0.73
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 69 EYDFIIVGAGPGGCTVANRLS 89
D +IVGAGP G A LS
Sbjct: 8 YCDVLIVGAGPAGLMAARVLS 28
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD;
1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1geu_A* 1ger_A* 1get_A*
Length = 450
Score = 31.3 bits (72), Expect = 0.82
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 69 EYDFIIVGAGPGGCTVANRLSE 90
YD+I +G G GG NR +
Sbjct: 4 HYDYIAIGGGSGGIASINRAAM 25
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin,
bacteroides F oxidoreductase; HET: FAD; 2.09A
{Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A*
2y6r_A* 3p9u_A*
Length = 398
Score = 31.2 bits (71), Expect = 0.85
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 73 IIVGAGPGGCTVANRL 88
I+G GP G T+A L
Sbjct: 30 AIIGGGPVGLTMAKLL 45
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle
structural genomics center for infectious gluathione
reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella
henselae}
Length = 484
Score = 30.9 bits (71), Expect = 0.92
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 69 EYDFIIVGAGPGGCTVANR 87
++D ++G+G GG A
Sbjct: 26 DFDLFVIGSGSGGVRAARL 44
>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein,
structural genomics, PSI-2, protein structure
initiative; HET: FAD; 2.30A {Chromobacterium violaceum
atcc 12472}
Length = 381
Score = 30.9 bits (69), Expect = 0.94
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 73 IIVGAGPGGCTVANRLSEI-PHWKILLLE 100
+++GAGP G A++L + P W I ++E
Sbjct: 4 LVIGAGPAGLVFASQLKQARPLWAIDIVE 32
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A
{Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 500
Score = 31.1 bits (71), Expect = 0.98
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 68 LEYDFIIVGAGPGGCTVANR 87
+ YD I++G G GG A R
Sbjct: 1 MVYDLIVIGGGSGGMAAARR 20
>4dna_A Probable glutathione reductase; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium; HET: FAD; 2.80A {Sinorhizobium
meliloti}
Length = 463
Score = 30.9 bits (71), Expect = 1.0
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 69 EYDFIIVGAGPGGCTVANR 87
+YD ++G G GG
Sbjct: 5 DYDLFVIGGGSGGVRSGRL 23
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity,
oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile}
PDB: 2rab_A*
Length = 463
Score = 30.9 bits (71), Expect = 1.0
Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 69 EYDFIIVGAGPGGCTVANRLSEIPH-WKILLLEAGHY 104
+D I +G G GG VA + + ++ L+E+
Sbjct: 4 HFDLIAIGGGSGGLAVAEKAAA--FGKRVALIESKAL 38
>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase,
complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas
testosteroni} PDB: 2dki_A*
Length = 639
Score = 31.0 bits (70), Expect = 1.1
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 69 EYDFIIVGAGPGGCTVANRLS 89
+ D +IVG GP G T+A +L+
Sbjct: 32 QVDVLIVGCGPAGLTLAAQLA 52
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase,
rossmann, flavoprotein, alternative initiati
mitochondrion, NADP; HET: FAD; 1.75A {Drosophila
melanogaster} PDB: 2nvk_X* 3dh9_A*
Length = 483
Score = 31.0 bits (71), Expect = 1.1
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 69 EYDFIIVGAGPGGCTVANR 87
+YD I++G G G A
Sbjct: 9 DYDLIVIGGGSAGLACAKE 27
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein,
FAD, mitochondrion, redox-active center, selenium,
selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus
musculus} PDB: 1zkq_A* 1zdl_A*
Length = 488
Score = 31.0 bits (71), Expect = 1.1
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 69 EYDFIIVGAGPGGCTVANR 87
+D +++G G GG A
Sbjct: 6 SFDLLVIGGGSGGLACAKE 24
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex,
rossmann fold, HO pyridine nucleotide disulfide
oxidoreductase, electron TRAN oxidoreductase; HET: FAD;
2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A*
2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Length = 519
Score = 30.6 bits (70), Expect = 1.2
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 69 EYDFIIVGAGPGGCTVANR 87
+YD II+G G GG A
Sbjct: 32 DYDLIIIGGGSGGLAAAKE 50
>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands,
dimer, cavity, oxidoreductase; 2.30A {Pseudomonas
putida}
Length = 430
Score = 30.6 bits (68), Expect = 1.2
Identities = 7/31 (22%), Positives = 10/31 (32%), Gaps = 10/31 (32%)
Query: 73 IIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103
IVGAG G + + L +
Sbjct: 26 GIVGAGTAGLHLG----------LFLRQHDV 46
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide,
acetylation, alternative initiation, cytoplasm, FAD,
flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A
{Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A*
1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A*
3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A*
1xan_A* 5grt_A* ...
Length = 478
Score = 30.5 bits (70), Expect = 1.3
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 69 EYDFIIVGAGPGGCTVANR 87
YD++++G G GG A R
Sbjct: 20 SYDYLVIGGGSGGLASARR 38
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase,
oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays}
SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A*
1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*
Length = 472
Score = 30.6 bits (69), Expect = 1.3
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 70 YDFIIVGAGPGGCTVANRLSEIPHWKILLLEA 101
I+VGAG G + A RLSE +L+LEA
Sbjct: 5 PRVIVVGAGMSGISAAKRLSEAGITDLLILEA 36
>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic
hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}
Length = 499
Score = 30.3 bits (69), Expect = 1.4
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 69 EYDFIIVGAGPGGCTVANRL 88
+ I+VGAGP G +A L
Sbjct: 12 DASVIVVGAGPAGLMLAGEL 31
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed
with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A
{Saccharomyces cerevisiae}
Length = 479
Score = 30.6 bits (70), Expect = 1.4
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 69 EYDFIIVGAGPGGCTVANR 87
YD++++G G GG A R
Sbjct: 11 HYDYLVIGGGSGGVASARR 29
>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein
structure initiative, TB structural genomics
consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium
tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A*
2c7g_A*
Length = 456
Score = 30.6 bits (69), Expect = 1.5
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 74 IVGAGPGGCTVANRL 88
IVG+GP A L
Sbjct: 8 IVGSGPSAFFAAASL 22
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H,
structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia
psychrerythraea}
Length = 492
Score = 30.6 bits (70), Expect = 1.5
Identities = 5/14 (35%), Positives = 7/14 (50%)
Query: 68 LEYDFIIVGAGPGG 81
+ D I+G G G
Sbjct: 7 INVDVAIIGTGTAG 20
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic
hydroxylase, nicotine degradation, mono-oxygenase; HET:
FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2
d.16.1.2
Length = 397
Score = 30.4 bits (69), Expect = 1.5
Identities = 7/29 (24%), Positives = 11/29 (37%), Gaps = 1/29 (3%)
Query: 73 IIVGAGPGGCTVANRLSEIPHWKILLLEA 101
+VG G T A L + + + E
Sbjct: 9 AVVGGSISGLTAALMLRDA-GVDVDVYER 36
>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic
hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}
Length = 500
Score = 30.3 bits (69), Expect = 1.5
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 69 EYDFIIVGAGPGGCTVANRL 88
+ I+VGAGP G +A L
Sbjct: 11 DAAVIVVGAGPAGMMLAGEL 30
>2x8g_A Thioredoxin glutathione reductase; redox-active center,
detoxification pathway, oxidoreductase, flavoprotein;
HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A*
2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Length = 598
Score = 30.4 bits (69), Expect = 1.6
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 69 EYDFIIVGAGPGGCTVANRLSE 90
+YD I++G G GG ++
Sbjct: 107 DYDLIVIGGGSGGLAAGKEAAK 128
>3r9u_A Thioredoxin reductase; structural genomics, center for structural
genomics of infec diseases, csgid,
thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A
{Campylobacter jejuni}
Length = 315
Score = 30.2 bits (69), Expect = 1.7
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 70 YDFIIVGAGPGGCTVA 85
D I+G GP G +
Sbjct: 5 LDVAIIGGGPAGLSAG 20
>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide
dehydrogenase, pyruvate dehydrogenase, alpha keto acid
dehydrogenase; HET: FAD; 2.40A {Mycobacterium
tuberculosis} PDB: 3ii4_A*
Length = 464
Score = 30.2 bits (69), Expect = 1.7
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 69 EYDFIIVGAGPGG 81
YD +++GAGPGG
Sbjct: 3 HYDVVVLGAGPGG 15
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB;
TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus
rimd 2210633}
Length = 183
Score = 29.3 bits (66), Expect = 1.9
Identities = 7/35 (20%), Positives = 11/35 (31%)
Query: 67 LLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEA 101
+I+G G G + L L +E
Sbjct: 37 PGHAQVLILGMGRIGTGAYDELRARYGKISLGIEI 71
>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase,
NADP+ B reduced izoalloxazine bending, oxidoreductase;
HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A*
3ish_A*
Length = 311
Score = 29.8 bits (68), Expect = 2.1
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 70 YDFIIVGAGPGGCTVA 85
D I+G GP G +
Sbjct: 2 IDCAIIGGGPAGLSAG 17
>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase;
HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB:
2r0g_A* 2r0p_A* 3ept_A*
Length = 549
Score = 30.1 bits (68), Expect = 2.2
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 68 LEYDFIIVGAGPGGCTVANRLS 89
+E D +I+G GP G +A L+
Sbjct: 25 IETDVLILGGGPVGMALALDLA 46
>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET:
FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5
d.87.1.1
Length = 499
Score = 29.8 bits (68), Expect = 2.2
Identities = 5/14 (35%), Positives = 8/14 (57%)
Query: 68 LEYDFIIVGAGPGG 81
+ +I+G GP G
Sbjct: 1 MVTRIVILGGGPAG 14
>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis,
merohedral twinning, enzyme mechanism, hydroxylase,
flavoprotein; HET: FAD VAK; 2.49A {Streptomyces
purpurascens}
Length = 535
Score = 29.7 bits (67), Expect = 2.3
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 69 EYDFIIVGAGPGGCTVANRLS 89
E D ++VGAG GG + A L+
Sbjct: 5 EVDVLVVGAGLGGLSTAMFLA 25
>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme
complex protein, pyruvate dehydrogenase complex,
glycine decarboxylase complex; HET: FAD; 3.15A {Pisum
sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 470
Score = 29.8 bits (68), Expect = 2.5
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 69 EYDFIIVGAGPGG 81
E D +I+G GPGG
Sbjct: 6 ENDVVIIGGGPGG 18
>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD;
2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5
d.87.1.1
Length = 458
Score = 29.4 bits (67), Expect = 2.8
Identities = 6/14 (42%), Positives = 10/14 (71%)
Query: 68 LEYDFIIVGAGPGG 81
++ +I+G GPGG
Sbjct: 4 IQTTLLIIGGGPGG 17
>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate
dehydrogenase, alpha- ketoglutarate dehydrogenase; HET:
FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A*
1zy8_A* 3rnm_A*
Length = 474
Score = 29.4 bits (67), Expect = 2.8
Identities = 6/14 (42%), Positives = 11/14 (78%)
Query: 68 LEYDFIIVGAGPGG 81
++ D ++G+GPGG
Sbjct: 5 IDADVTVIGSGPGG 18
>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural
genomics, PSI-2, protein structure initiative; HET:
ADP; 2.50A {Sulfolobus solfataricus}
Length = 466
Score = 29.4 bits (67), Expect = 3.0
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 68 LEYDFIIVGAGPGG 81
L+YD +++GAG G
Sbjct: 3 LKYDVVVIGAGGAG 16
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB:
3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Length = 371
Score = 29.4 bits (66), Expect = 3.0
Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 9/60 (15%)
Query: 300 KACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIPVIKNLRVG 359
K V + I IL + E+ AG+ P ++ E L+ IPV+
Sbjct: 287 KLNRVFDKVSAI---ILGKHELFDCAGSKRRPYEVLT------EVLDGKQIPVLDGFDCS 337
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase,
flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia
fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A*
1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A*
2x50_A* 2ve2_A*
Length = 490
Score = 29.4 bits (67), Expect = 3.0
Identities = 7/36 (19%), Positives = 18/36 (50%)
Query: 69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAGHY 104
YD +++GAG GG + + ++ +++ +
Sbjct: 3 AYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKH 38
>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET:
FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2
d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A*
1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A*
1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A*
1phh_A* ...
Length = 394
Score = 29.2 bits (66), Expect = 3.0
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 68 LEYDFIIVGAGPGGCTVANRL 88
++ I+GAGP G + L
Sbjct: 1 MKTQVAIIGAGPSGLLLGQLL 21
>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex,
pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A
{Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5
d.87.1.1 PDB: 1jeh_A*
Length = 478
Score = 29.4 bits (67), Expect = 3.1
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 69 EYDFIIVGAGPGG 81
+D +I+G GP G
Sbjct: 5 SHDVVIIGGGPAG 17
>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics,
protein structure initiati YORK structural genomics
research consortium; HET: FAD; 1.90A {Sinorhizobium
meliloti}
Length = 491
Score = 29.4 bits (67), Expect = 3.1
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 69 EYDFIIVGAGPGG 81
YD I++G+GPGG
Sbjct: 25 AYDLIVIGSGPGG 37
>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase,
flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE;
1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A*
3ayl_A*
Length = 721
Score = 29.5 bits (64), Expect = 3.2
Identities = 9/53 (16%), Positives = 14/53 (26%), Gaps = 7/53 (13%)
Query: 73 IIVGAGPGGCTVANRLSEIPH-------WKILLLEAGHYFNYLVDIPVLNTNL 118
IVG G GG L + + + EA + +
Sbjct: 60 AIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSFLHDRPGIKAIKV 112
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center,
glycolysis, oxidoreductase; HET: FAD; 2.60A
{Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5
d.87.1.1
Length = 455
Score = 29.4 bits (67), Expect = 3.4
Identities = 8/14 (57%), Positives = 12/14 (85%)
Query: 68 LEYDFIIVGAGPGG 81
+E + ++VGAGPGG
Sbjct: 2 IETETLVVGAGPGG 15
>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein,
oxidoreductase; HET: FAD; 2.89A {Streptomyces
argillaceus}
Length = 570
Score = 29.3 bits (66), Expect = 3.4
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 68 LEYDFIIVGAGPGGCTVANRL 88
L D ++VG GP G +A L
Sbjct: 48 LTTDVVVVGGGPVGLMLAGEL 68
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction
mechanism, sustrat binding, oxidoreductase; HET: NAG FUC
PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2
d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A*
1tdo_A* 3kve_A* 4e0v_A*
Length = 498
Score = 29.5 bits (66), Expect = 3.5
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEA 101
+IVGAG G + A L+ ++ +LEA
Sbjct: 33 PKHVVIVGAGMAGLSAAYVLAGA-GHQVTVLEA 64
>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo
oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Length = 376
Score = 29.2 bits (64), Expect = 3.5
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 73 IIVGAGPGGCTVANRLSEIPHWKILLLEA 101
+IVGAG G + L+ H + +LEA
Sbjct: 48 LIVGAGIAGLVAGDLLTRAGH-DVTILEA 75
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural
genomics, PSI-2, protein STRU initiative; HET: AMP;
2.10A {Pyrococcus furiosus}
Length = 421
Score = 29.3 bits (66), Expect = 3.5
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 73 IIVGAGPGGCTVANRLS 89
++VGAG GG L+
Sbjct: 4 VVVGAGLGGLLAGAFLA 20
>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A
{Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1lpf_A*
Length = 476
Score = 29.0 bits (66), Expect = 3.6
Identities = 8/13 (61%), Positives = 12/13 (92%)
Query: 69 EYDFIIVGAGPGG 81
++D I++GAGPGG
Sbjct: 3 KFDVIVIGAGPGG 15
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural
genomics, NPPSFA, project on protein structural and
functional analyses; HET: FAD; 2.10A {Thermus
thermophilus}
Length = 335
Score = 29.1 bits (66), Expect = 3.7
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 69 EYDFIIVGAGPGG 81
D +IVGAGP G
Sbjct: 5 HTDVLIVGAGPTG 17
>2qae_A Lipoamide, dihydrolipoyl dehydrogenase;
FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A
{Trypanosoma cruzi}
Length = 468
Score = 29.0 bits (66), Expect = 3.7
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 69 EYDFIIVGAGPGG 81
YD +++G GPGG
Sbjct: 2 PYDVVVIGGGPGG 14
>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein,
oxidoreductase, redox- active center; HET: FAD; 1.90A
{Deinococcus radiodurans}
Length = 325
Score = 29.0 bits (66), Expect = 3.8
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 69 EYDFIIVGAGPGGCTVA 85
+YD +I+G GP G T A
Sbjct: 8 DYDVVIIGGGPAGLTAA 24
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase;
HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A*
3rp6_A*
Length = 407
Score = 29.2 bits (66), Expect = 3.9
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 10/31 (32%)
Query: 73 IIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103
I++GAG GG + A + L ++G
Sbjct: 27 IVIGAGIGGLSAA----------VALKQSGI 47
>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3
component; oxidoreductase, homodimer, structural
genomics, NPPSFA; HET: FAD; 1.60A {Thermus
thermophilus} PDB: 2eq8_A* 2eq9_A*
Length = 464
Score = 29.0 bits (66), Expect = 4.0
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 69 EYDFIIVGAGPGG 81
YD I++G GPGG
Sbjct: 6 TYDLIVIGTGPGG 18
>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET:
FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A*
2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A*
1kif_A* 1an9_A* 1evi_A*
Length = 351
Score = 28.9 bits (64), Expect = 4.3
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 10/42 (23%)
Query: 73 IIVGAGPGGCTVANRLSEIPHWKILLLEAGHYFNYLVDIPVL 114
+++GAG G + A + + E H +DI V
Sbjct: 4 VVIGAGVIGLSTA----------LCIHERYHSVLQPLDIKVY 35
>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold,
oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti}
PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A*
3all_A*
Length = 379
Score = 28.8 bits (65), Expect = 4.5
Identities = 8/31 (25%), Positives = 10/31 (32%), Gaps = 10/31 (32%)
Query: 73 IIVGAGPGGCTVANRLSEIPHWKILLLEAGH 103
+ G G G T A I L + G
Sbjct: 15 EVAGGGFAGLTAA----------IALKQNGW 35
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for
structural genomi infectious diseases, csgid, serine
peptidase S66; 1.95A {Bacillus anthracis}
Length = 331
Score = 28.7 bits (65), Expect = 4.6
Identities = 11/69 (15%), Positives = 17/69 (24%), Gaps = 28/69 (40%)
Query: 300 KACGVLATIKGI---------DHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNI 350
+KGI + I +E+I +I
Sbjct: 252 MQQQNFKHVKGIVIGKMQKGAECTIEDIQEMIA-------------------SKPELAHI 292
Query: 351 PVIKNLRVG 359
P+I N G
Sbjct: 293 PIIANASFG 301
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase,
oxidoreductase; HET: FAD; 1.60A {Pseudomonas
aeruginosa} PDB: 1zx9_A*
Length = 467
Score = 29.0 bits (66), Expect = 4.6
Identities = 4/22 (18%), Positives = 8/22 (36%)
Query: 69 EYDFIIVGAGPGGCTVANRLSE 90
++G+G A + E
Sbjct: 4 PVQVAVIGSGGAAMAAALKAVE 25
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF
protein, center for structu genomics of infectious
diseases, immune system; 1.50A {Bacillus anthracis} PDB:
3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Length = 336
Score = 28.8 bits (65), Expect = 4.6
Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 9/60 (15%)
Query: 300 KACGVLATIKGIDHKILARKEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIPVIKNLRVG 359
K GV + GI IL + E G P ++L E L + IP++ +
Sbjct: 255 KINGVFDKVSGI---ILGKHEQFDDCGTNRKPYEILL------EVLQNQRIPLLADFDCC 305
>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide
dehydrogenase, 2-oxoglutarate dehydrogenase comple
pyruvate dehydrogenase complex; HET: FAD; 1.70A
{Thermus thermophilus} PDB: 2eq7_A*
Length = 455
Score = 28.6 bits (65), Expect = 4.7
Identities = 8/12 (66%), Positives = 11/12 (91%)
Query: 70 YDFIIVGAGPGG 81
YD +++GAGPGG
Sbjct: 2 YDLLVIGAGPGG 13
>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase,
NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria
meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1bhy_A*
Length = 482
Score = 28.7 bits (65), Expect = 5.0
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 69 EYDFIIVGAGPGG 81
EYD +++G GPGG
Sbjct: 6 EYDVVVLGGGPGG 18
>3g23_A Peptidase U61, LD-carboxypeptidase A; flavodoxin-like fold,
catalytic triad, merops S66 unassigned peptidases
family; HET: MSE; 1.89A {Novosphingobium
aromaticivorans}
Length = 274
Score = 28.3 bits (63), Expect = 6.3
Identities = 11/61 (18%), Positives = 19/61 (31%), Gaps = 9/61 (14%)
Query: 300 KACGVLATIKGIDHKILAR-KEVILSAGAFNSPKLLMLSGIGPQEHLNDLNIPVIKNLRV 358
+C A I G+ L R +V + F M + + I + +
Sbjct: 209 TSCLADAGIAGL---RLGRVSDVPENDRPFGCSVEEMA-----RHWCHRAGIAFLGTADI 260
Query: 359 G 359
G
Sbjct: 261 G 261
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping
sickness, flavoPro redox-active center; HET: FAD WPF;
1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A*
2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A*
1bzl_A* 1aog_A*
Length = 495
Score = 28.3 bits (64), Expect = 6.3
Identities = 6/33 (18%), Positives = 17/33 (51%)
Query: 69 EYDFIIVGAGPGGCTVANRLSEIPHWKILLLEA 101
+D +++GAG GG + + ++ +++
Sbjct: 7 AFDLVVIGAGSGGLEAGWNAATLYGKRVAVVDV 39
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: FAD; 1.84A {Bacillus
cereus} SCOP: c.3.1.8 e.74.1.1
Length = 447
Score = 27.9 bits (63), Expect = 8.3
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 7/51 (13%)
Query: 52 FEQLEYKSSNKDQDLLLEYDFIIVGAGPGGCTVANRLSEIPHWKILLLEAG 102
E L ++S+ YD I++G GP G A +E +LLL+ G
Sbjct: 15 TENLYFQSNAMH------YDVIVIGGGPSGLMAAIGAAE-EGANVLLLDKG 58
>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical
bundle, sandwiched sheets, structural genomics; HET: TRP
FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A*
2ar8_A* 2ard_A* 2jkc_A*
Length = 538
Score = 28.1 bits (61), Expect = 8.8
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 73 IIVGAGPGGCTVANRLSEI--PHWKILLLE 100
+IVG G G A+ L I L+E
Sbjct: 9 VIVGGGTAGWMAASYLVRALQQQANITLIE 38
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center
for structural genomics, J protein structure
initiative, PSI-2; HET: AMP; 1.50A {Thermotoga
maritima} PDB: 3l4b_A*
Length = 155
Score = 27.2 bits (61), Expect = 8.9
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 73 IIVGAGPGGCTVANRLSEIPH 93
+I G G G +AN S H
Sbjct: 23 VIFGCGRLGSLIANLASSSGH 43
>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II,
membrane protein, heme protein, iron sulfur PROT
cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL;
1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A*
2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A*
3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A*
3aea_A* 3aeb_A* 3aec_A* ...
Length = 621
Score = 28.1 bits (63), Expect = 9.3
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 69 EYDFIIVGAGPGGCTVANRLSE 90
E+D ++VGAG G A LSE
Sbjct: 18 EFDAVVVGAGGAGLRAAFGLSE 39
>1tib_A Lipase; hydrolase(carboxylic esterase); 1.84A {Thermomyces
lanuginosus} SCOP: c.69.1.17 PDB: 1dt3_A 1dt5_A 1du4_A
1ein_A* 1dte_A 4dyh_A* 4ea6_A 1gt6_A*
Length = 269
Score = 27.6 bits (61), Expect = 9.4
Identities = 11/94 (11%), Positives = 28/94 (29%), Gaps = 12/94 (12%)
Query: 180 NYGWS-YNEVLPYFKKAERIQISELQNSSYHGTQGFIGVDYTEYN--------TPMLDAF 230
+ P +KA+ + ++S GF+ +D T + +
Sbjct: 31 GTNITCTGNACPEVEKADATFLYSFEDSGVGDVTGFLALDNTNKLIVLSFRGSRSIENWI 90
Query: 231 --LQAGMEAGYPLVDYNGKTQTGFARAQATLHKR 262
L ++ + + GF + ++
Sbjct: 91 GNLNFDLKE-INDICSGCRGHDGFTSSWRSVADT 123
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH,
flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus
subtilis} PDB: 3lzx_A*
Length = 332
Score = 27.5 bits (62), Expect = 9.8
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 69 EYDFIIVGAGPGG 81
YD I+G GP G
Sbjct: 7 VYDITIIGGGPVG 19
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.416
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,871,702
Number of extensions: 482501
Number of successful extensions: 1372
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1295
Number of HSP's successfully gapped: 178
Length of query: 511
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 413
Effective length of database: 3,965,535
Effective search space: 1637765955
Effective search space used: 1637765955
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.4 bits)