BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy7601
         (101 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1AQU|A Chain A, Estrogen Sulfotransferase With Bound Inactive Cofactor Pap
           And 17-Beta Estradiol
 pdb|1AQU|B Chain B, Estrogen Sulfotransferase With Bound Inactive Cofactor Pap
           And 17-Beta Estradiol
 pdb|1AQY|A Chain A, Estrogen Sulfotransferase With Pap
 pdb|1AQY|B Chain B, Estrogen Sulfotransferase With Pap
 pdb|1BO6|A Chain A, Estrogen Sulfotransferase With Inactive Cofactor Pap And
           Vanadate
 pdb|1BO6|B Chain B, Estrogen Sulfotransferase With Inactive Cofactor Pap And
           Vanadate
          Length = 297

 Score = 32.0 bits (71), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 34  YTYVFAYYLRKNNQSVLF---EDNQKDLESATEKLSEYLERDITSENLANIKQQV 85
           Y +V A++ +  N  VLF   ED ++D+     KL E+LER  ++E +  I Q  
Sbjct: 175 YDHVKAWWEKSKNSRVLFMFYEDMKEDIRREVVKLIEFLERKPSAELVDRIIQHT 229


>pdb|2REO|A Chain A, Crystal Structure Of Human Sulfotransferase 1c3 (Sult1c3)
           In Complex With Pap
          Length = 305

 Score = 29.3 bits (64), Expect = 0.55,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 34  YTYVFAYYLRKNNQSVLF---EDNQKDLESATEKLSEYLERDITSENLANI 81
           + +V  ++  K+   +L+   ED +KD +   EK+ ++LE+DI+ E L  I
Sbjct: 183 FDHVKGWWAAKDMHRILYLFYEDIKKDPKREIEKILKFLEKDISEEILNKI 233


>pdb|2H8K|A Chain A, Human Sulfotranferase Sult1c3 In Complex With Pap
 pdb|2H8K|B Chain B, Human Sulfotranferase Sult1c3 In Complex With Pap
          Length = 306

 Score = 29.3 bits (64), Expect = 0.55,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 34  YTYVFAYYLRKNNQSVLF---EDNQKDLESATEKLSEYLERDITSENLANI 81
           + +V  ++  K+   +L+   ED +KD +   EK+ ++LE+DI+ E L  I
Sbjct: 184 FDHVKGWWAAKDMHRILYLFYEDIKKDPKREIEKILKFLEKDISEEILNKI 234


>pdb|1YVP|A Chain A, Ro Autoantigen Complexed With Rnas
 pdb|1YVP|B Chain B, Ro Autoantigen Complexed With Rnas
 pdb|1YVR|A Chain A, Ro Autoantigen
 pdb|2I91|A Chain A, 60kda Ro Autoantigen In Complex With A Fragment Of
           Misfolded Rna
 pdb|2I91|B Chain B, 60kda Ro Autoantigen In Complex With A Fragment Of
           Misfolded Rna
          Length = 538

 Score = 27.7 bits (60), Expect = 1.6,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 8/63 (12%)

Query: 39  AYYLRKNNQSVLFEDNQKDLESATEKLSEYLERDITSENLANIKQQVQ-----DKYRLVK 93
           A Y+ K  + V     +K+L   TEK+ +YLE    +E +   K +++     D+YRLV+
Sbjct: 199 AKYVSKGWKEVQEAYKEKELSPETEKVLKYLE---ATERVKRTKDELEIIHLIDEYRLVR 255

Query: 94  IQL 96
             L
Sbjct: 256 EHL 258


>pdb|2VA8|A Chain A, Dna Repair Helicase Hel308
 pdb|2VA8|B Chain B, Dna Repair Helicase Hel308
          Length = 715

 Score = 26.9 bits (58), Expect = 3.2,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 42  LRKNNQSVLFEDNQKDLESATEKLSEYLERDITSEN-LANIKQQVQD 87
           L KN Q ++F +++K  ES   K++ Y+      EN L+ I +Q+ D
Sbjct: 249 LSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDD 295


>pdb|2Z5F|A Chain A, Human Sulfotransferase Sult1b1 In Complex With Pap
 pdb|2Z5F|B Chain B, Human Sulfotransferase Sult1b1 In Complex With Pap
          Length = 298

 Score = 26.6 bits (57), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 34  YTYVFAYYLRKNNQSVLF---EDNQKDLESATEKLSEYLERDITSENLANI 81
           +T+V  ++ RK    +LF   ED +++ +   +K+  +LE+++  E L  I
Sbjct: 176 FTHVKNWWKRKEEHPILFLYYEDMKENPKEEIKKIIRFLEKNLNDEILDRI 226


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.132    0.363 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,453,382
Number of Sequences: 62578
Number of extensions: 79709
Number of successful extensions: 311
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 307
Number of HSP's gapped (non-prelim): 20
length of query: 101
length of database: 14,973,337
effective HSP length: 67
effective length of query: 34
effective length of database: 10,780,611
effective search space: 366540774
effective search space used: 366540774
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)