Query psy7601
Match_columns 101
No_of_seqs 108 out of 316
Neff 5.5
Searched_HMMs 46136
Date Fri Aug 16 22:33:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7601.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7601hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1815|consensus 99.7 1.4E-18 3E-23 141.4 3.5 91 9-99 334-427 (444)
2 KOG1584|consensus 58.2 21 0.00044 28.7 4.5 72 18-90 157-235 (297)
3 PF05633 DUF793: Protein of un 57.8 33 0.00071 28.6 5.7 43 57-99 319-364 (389)
4 PF09851 SHOCT: Short C-termin 56.7 24 0.00051 18.7 3.3 28 60-87 3-31 (31)
5 PF04406 TP6A_N: Type IIB DNA 44.3 16 0.00034 22.4 1.5 29 40-73 34-62 (68)
6 PF13371 TPR_9: Tetratricopept 39.7 75 0.0016 18.3 4.1 39 47-85 34-72 (73)
7 PHA02109 hypothetical protein 39.5 51 0.0011 25.1 3.8 23 75-97 206-228 (233)
8 PF07749 ERp29: Endoplasmic re 39.4 62 0.0014 21.2 3.9 34 56-89 59-92 (95)
9 COG3883 Uncharacterized protei 39.1 1.1E+02 0.0025 24.1 5.9 26 76-101 87-112 (265)
10 PHA02815 hypothetical protein; 36.0 15 0.00032 23.1 0.4 13 30-42 16-28 (64)
11 PRK14011 prefoldin subunit alp 34.9 1.4E+02 0.0031 21.2 5.4 26 47-72 89-114 (144)
12 PF00675 Peptidase_M16: Insuli 34.2 72 0.0016 21.2 3.7 31 57-87 83-114 (149)
13 PF07845 DUF1636: Protein of u 31.3 27 0.00059 24.1 1.2 27 32-58 64-90 (116)
14 PLN02164 sulfotransferase 30.9 76 0.0016 25.6 3.8 74 18-91 199-280 (346)
15 cd00238 ERp29c ERp29 and ERp38 30.6 1.4E+02 0.0031 19.5 4.5 39 50-88 51-90 (93)
16 TIGR01827 gatC_rel Asp-tRNA(As 30.1 62 0.0013 20.5 2.6 18 54-71 2-19 (73)
17 PF07417 Crl: Transcriptional 29.4 83 0.0018 22.3 3.4 40 33-72 66-111 (125)
18 PF07197 DUF1409: Protein of u 28.5 1.4E+02 0.003 18.0 3.8 23 77-99 27-49 (51)
19 PF10835 DUF2573: Protein of u 28.5 1.8E+02 0.0039 19.2 4.7 27 52-78 2-28 (82)
20 PF12126 DUF3583: Protein of u 28.5 1.4E+02 0.003 24.4 4.8 46 47-95 103-154 (324)
21 KOG4234|consensus 27.9 1.9E+02 0.004 22.9 5.3 48 48-99 175-222 (271)
22 PF02970 TBCA: Tubulin binding 27.6 93 0.002 20.3 3.2 35 48-82 54-88 (90)
23 TIGR00293 prefoldin, archaeal 27.4 67 0.0015 21.4 2.6 35 38-72 76-112 (126)
24 PF05193 Peptidase_M16_C: Pept 26.3 1.6E+02 0.0036 19.1 4.3 33 53-85 152-184 (184)
25 KOG2196|consensus 25.8 3.4E+02 0.0073 21.5 6.8 52 48-99 136-190 (254)
26 PRK10984 DNA-binding transcrip 22.5 1.5E+02 0.0032 21.1 3.6 38 32-69 67-111 (127)
27 PF04899 MbeD_MobD: MbeD/MobD 21.7 2.2E+02 0.0048 18.0 6.5 47 49-97 17-63 (70)
28 KOG3470|consensus 20.3 3.1E+02 0.0066 19.0 4.9 39 48-86 60-98 (107)
29 PRK00810 nifW nitrogenase stab 20.0 39 0.00084 23.4 0.2 48 6-56 45-93 (113)
30 PF04048 Sec8_exocyst: Sec8 ex 20.0 2.9E+02 0.0063 19.1 4.7 50 49-98 47-108 (142)
No 1
>KOG1815|consensus
Probab=99.73 E-value=1.4e-18 Score=141.44 Aligned_cols=91 Identities=46% Similarity=0.671 Sum_probs=84.7
Q ss_pred cccchhHHHHHHHHHHHHHHhHhhhhhhhhhccccCCCCchhHHHHHHHHHHHHHHHHHHHhhc---CChhhHHHHHHHH
Q psy7601 9 YLRKNNQSVLKKAVDILCQCRQTLMYTYVFAYYLRKNNQSVLFEDNQKDLESATEKLSEYLERD---ITSENLANIKQQV 85 (101)
Q Consensus 9 ~Ls~~d~~fl~~A~~~L~~cRrvLkwSY~faYyl~~~~~~~lFE~~Q~~lE~~vE~Ls~~le~~---~~~~~~~~~k~~v 85 (101)
.++|+|++|+.+|+..|++||++|+|||+||||+..++++++||++|.+||..+|.||.+++.+ .+.+++.++|+++
T Consensus 334 ~~~~~~~~~~~~~~~~l~e~r~~l~~s~~~~~~~~~~~~~~~fe~~q~~~~~~~e~ls~~~~~~~~~~~~~~~~~~~~~~ 413 (444)
T KOG1815|consen 334 SLSWIDVQFLRDAGDVLVECRRTLKWTYAYAYYLSENNKRNLFEDNQTDLESAVEPLSSCLEESLKDISSETLAEFKQKL 413 (444)
T ss_pred CeeeeeeeeechhHHHHHhhhhhhhhhhhhhhhhcccchhhhhHHHHHHHhhhhhhhHHHhccccccCCcccHHHHHhhc
Confidence 3568999999999999999999999999999999988888999999999999999999999994 4568899999999
Q ss_pred HHHHHHHHHHHHhh
Q psy7601 86 QDKYRLVKIQLKYS 99 (101)
Q Consensus 86 ~~~t~~v~~r~~~~ 99 (101)
.++|.++++|+..+
T Consensus 414 ~~~~~~~~~~~~~~ 427 (444)
T KOG1815|consen 414 TDLTSYVRNRFENL 427 (444)
T ss_pred cccchhhhhHHHHH
Confidence 99999999998764
No 2
>KOG1584|consensus
Probab=58.19 E-value=21 Score=28.70 Aligned_cols=72 Identities=18% Similarity=0.318 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHhHhh---hhhhhhhccccCCCCch---hHHHHHHHHHHHHHHHHHHHhhcCChhhHH-HHHHHHHHHHH
Q psy7601 18 LKKAVDILCQCRQTL---MYTYVFAYYLRKNNQSV---LFEDNQKDLESATEKLSEYLERDITSENLA-NIKQQVQDKYR 90 (101)
Q Consensus 18 l~~A~~~L~~cRrvL---kwSY~faYyl~~~~~~~---lFE~~Q~~lE~~vE~Ls~~le~~~~~~~~~-~~k~~v~~~t~ 90 (101)
+++.++.-+++ .++ =|.-|-||---++...- -+|++.+|+...|.+|++.|+.+.+.++.. -..+.+.++++
T Consensus 157 ~e~~fe~F~~G-~~~~Gp~~dHVl~~W~~~~~~~VLFl~YEdmk~dp~~~ikrlaeFLg~~~~~Ee~~~~~~~~~~~~~~ 235 (297)
T KOG1584|consen 157 FEEFFESFCNG-VVPYGPWWDHVLGYWELEDPKNVLFLKYEDMKADPKGEIKKLAEFLGCPFTKEEEDKGVVHLSFELCS 235 (297)
T ss_pred HHHHHHHHhCC-cCCcCChHHHHHHHHHhcCCCceEEEEHHHhhhCHHHHHHHHHHHhCCCCCHHHHhhhhHHHHHHHHh
Confidence 55566655444 121 14556666643443433 469999999999999999999998766543 24455555553
No 3
>PF05633 DUF793: Protein of unknown function (DUF793); InterPro: IPR008511 This entry includes Protein BYPASS 1 which is required for normal root and shoot development. Prevents constitutive production of a root mobile carotenoid-derived signaling compound that is capable of arresting shoot and leaf development [, ].
Probab=57.78 E-value=33 Score=28.55 Aligned_cols=43 Identities=14% Similarity=0.288 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHhh---cCChhhHHHHHHHHHHHHHHHHHHHHhh
Q psy7601 57 DLESATEKLSEYLER---DITSENLANIKQQVQDKYRLVKIQLKYS 99 (101)
Q Consensus 57 ~lE~~vE~Ls~~le~---~~~~~~~~~~k~~v~~~t~~v~~r~~~~ 99 (101)
++|..+.+|+++++. +.+.++-.+++..+.++..+|+.....|
T Consensus 319 ~ve~~vr~L~el~d~~~~p~~~e~~~ev~~~V~EL~~~~~~L~~GL 364 (389)
T PF05633_consen 319 QVEASVRELHELIDSFQFPLEEEKEEEVREAVEELARVCEALSQGL 364 (389)
T ss_pred HHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHccc
Confidence 678889999988876 4567778899999999999999876653
No 4
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=56.67 E-value=24 Score=18.68 Aligned_cols=28 Identities=25% Similarity=0.389 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhhc-CChhhHHHHHHHHHH
Q psy7601 60 SATEKLSEYLERD-ITSENLANIKQQVQD 87 (101)
Q Consensus 60 ~~vE~Ls~~le~~-~~~~~~~~~k~~v~~ 87 (101)
..++.|..+.+.. ++.+++...|.+|++
T Consensus 3 ~~L~~L~~l~~~G~IseeEy~~~k~~ll~ 31 (31)
T PF09851_consen 3 DRLEKLKELYDKGEISEEEYEQKKARLLS 31 (31)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHhC
Confidence 4678888888775 688899999988763
No 5
>PF04406 TP6A_N: Type IIB DNA topoisomerase; InterPro: IPR013049 This entry represents the N-terminal domain found in Spo11, a meiotic recombination protein found in eukaryotes, and in subunit A of topoisomerase VI, a type IIB topoisomerase found predominantly in archaea [, ]. These two types of proteins share structural homology. Spo11 is a meiosis-specific protein that is responsible for the initiation of recombination through the formation of DNA double-strand breaks by a type II DNA topoisomerase-like activity. Spo11 acts in conjunction with several other proteins, including Rec102 in yeast, to bring about meiotic recombination []. DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks. They can be divided into two classes: type I enzymes (5.99.1.2 from EC, topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC, topoisomerases II, IV and VI) break double-strand DNA []. Topoisomerase VI is a type IIB enzymes that assembles as a heterotetramer, consisting of two A subunits required for DNA cleavage and two B subunits required for ATP hydrolysis. The B subunit is structurally similar to the ATPase domain of type IIA topoisomerases, but the A subunit is distinct, and instead shares homology with the Spo11 protein. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003824 catalytic activity, 0005524 ATP binding, 0006259 DNA metabolic process, 0005694 chromosome; PDB: 1D3Y_B 2ZBK_A 2Q2E_A.
Probab=44.26 E-value=16 Score=22.43 Aligned_cols=29 Identities=24% Similarity=0.461 Sum_probs=21.4
Q ss_pred ccccCCCCchhHHHHHHHHHHHHHHHHHHHhhcC
Q psy7601 40 YYLRKNNQSVLFEDNQKDLESATEKLSEYLERDI 73 (101)
Q Consensus 40 Yyl~~~~~~~lFE~~Q~~lE~~vE~Ls~~le~~~ 73 (101)
||..+ ++| ..|......+++++.+++-+.
T Consensus 34 YY~~~----~lF-~~Q~~vd~~i~di~~~l~~~R 62 (68)
T PF04406_consen 34 YYRNV----SLF-KSQREVDRAIDDICCLLGVSR 62 (68)
T ss_dssp HHHCS----CS--SSHHHHHHHHHHHHHHHTS-G
T ss_pred HHhch----hhc-cCHHHHHHHHHHHHHHHCCCH
Confidence 55544 488 559999999999999998753
No 6
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=39.75 E-value=75 Score=18.26 Aligned_cols=39 Identities=18% Similarity=0.095 Sum_probs=30.1
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHH
Q psy7601 47 QSVLFEDNQKDLESATEKLSEYLERDITSENLANIKQQV 85 (101)
Q Consensus 47 ~~~lFE~~Q~~lE~~vE~Ls~~le~~~~~~~~~~~k~~v 85 (101)
..-..-..+++.+.+.+.|+..++...++.+....+.++
T Consensus 34 ~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~l 72 (73)
T PF13371_consen 34 QRARCLFQLGRYEEALEDLERALELSPDDPDARALRAML 72 (73)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHhc
Confidence 356777888999999999999998876666666655543
No 7
>PHA02109 hypothetical protein
Probab=39.52 E-value=51 Score=25.14 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=19.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q psy7601 75 SENLANIKQQVQDKYRLVKIQLK 97 (101)
Q Consensus 75 ~~~~~~~k~~v~~~t~~v~~r~~ 97 (101)
+++...++.|++|+-.+|+.|..
T Consensus 206 S~E~~Q~~~Ki~N~R~~Vk~~LS 228 (233)
T PHA02109 206 SDEACQVKHKILNLRAEVKRRLS 228 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999999988754
No 8
>PF07749 ERp29: Endoplasmic reticulum protein ERp29, C-terminal domain; InterPro: IPR011679 ERp29 is a ubiquitously expressed endoplasmic reticulum protein found in mammals []. This protein is found associated with an N-terminal thioredoxin-like domain (IPR006662 from INTERPRO), which is homologous to the domain of human protein disulphide isomerase (PDI). ERp29 may help mediate the chaperone function of PDI. The C-terminal Erp29 domain has a 5-helical bundle fold. ERp29 is thought to form part of the thyroglobulin folding complex []. ; GO: 0005783 endoplasmic reticulum; PDB: 2QC7_B 1G7D_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_A.
Probab=39.44 E-value=62 Score=21.16 Aligned_cols=34 Identities=12% Similarity=0.218 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHH
Q psy7601 56 KDLESATEKLSEYLERDITSENLANIKQQVQDKY 89 (101)
Q Consensus 56 ~~lE~~vE~Ls~~le~~~~~~~~~~~k~~v~~~t 89 (101)
+-+++.+++|+.+++..++++...++..++--|.
T Consensus 59 ~fv~~E~~RL~~lL~~~l~~~K~del~~R~NIL~ 92 (95)
T PF07749_consen 59 EFVAKEIARLERLLEGKLSPEKKDELQKRLNILS 92 (95)
T ss_dssp HHHHHHHHHHHHHHHSSS-HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 4478889999999998888888877777655443
No 9
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.11 E-value=1.1e+02 Score=24.15 Aligned_cols=26 Identities=15% Similarity=0.325 Sum_probs=22.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhC
Q psy7601 76 ENLANIKQQVQDKYRLVKIQLKYSYK 101 (101)
Q Consensus 76 ~~~~~~k~~v~~~t~~v~~r~~~~y~ 101 (101)
.+|...+..|.....+..+|-+.||.
T Consensus 87 ~eI~~~~~~I~~r~~~l~~raRAmq~ 112 (265)
T COG3883 87 KEIAELKENIVERQELLKKRARAMQV 112 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888899999999999999999983
No 10
>PHA02815 hypothetical protein; Provisional
Probab=35.98 E-value=15 Score=23.14 Aligned_cols=13 Identities=23% Similarity=0.427 Sum_probs=10.1
Q ss_pred Hhhhhhhhhhccc
Q psy7601 30 QTLMYTYVFAYYL 42 (101)
Q Consensus 30 rvLkwSY~faYyl 42 (101)
+..+|||+++++-
T Consensus 16 ~Lv~wsyv~~~~~ 28 (64)
T PHA02815 16 QLVNCFYLFKLFN 28 (64)
T ss_pred HHHHHHHHHHHHH
Confidence 4568999998874
No 11
>PRK14011 prefoldin subunit alpha; Provisional
Probab=34.88 E-value=1.4e+02 Score=21.19 Aligned_cols=26 Identities=12% Similarity=0.144 Sum_probs=20.9
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHhhc
Q psy7601 47 QSVLFEDNQKDLESATEKLSEYLERD 72 (101)
Q Consensus 47 ~~~lFE~~Q~~lE~~vE~Ls~~le~~ 72 (101)
..+.|+.--+.|++..++|.+.+++.
T Consensus 89 A~~~~~~ri~~l~~~~~~l~~~i~~~ 114 (144)
T PRK14011 89 VIEDFKKSVEELDKTKKEGNKKIEEL 114 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888888888888888888765
No 12
>PF00675 Peptidase_M16: Insulinase (Peptidase family M16) This is family M16 in the peptidase classification. ; InterPro: IPR011765 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. The majority of the sequences in this entry are metallopeptidases and non-peptidase homologs belong to MEROPS peptidase family M16 (clan ME), subfamilies M16A, M16B and M16C; they include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The proteins classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3P7L_A 3P7O_A 3TUV_A 3GO9_A 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B ....
Probab=34.19 E-value=72 Score=21.24 Aligned_cols=31 Identities=29% Similarity=0.400 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHhhc-CChhhHHHHHHHHHH
Q psy7601 57 DLESATEKLSEYLERD-ITSENLANIKQQVQD 87 (101)
Q Consensus 57 ~lE~~vE~Ls~~le~~-~~~~~~~~~k~~v~~ 87 (101)
+++..++-|++++..| ++++++...|..+..
T Consensus 83 ~~~~~l~~l~~~~~~P~f~~~~~~~~r~~~~~ 114 (149)
T PF00675_consen 83 DLEKALELLADMLFNPSFDEEEFEREREQILQ 114 (149)
T ss_dssp GHHHHHHHHHHHHHSBGGCHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 4888999999999888 677888887776655
No 13
>PF07845 DUF1636: Protein of unknown function (DUF1636); InterPro: IPR012863 The sequences featured in this family are derived from a number of hypothetical prokaryotic proteins. The region in question is approximately 130 amino acids long.
Probab=31.30 E-value=27 Score=24.08 Aligned_cols=27 Identities=11% Similarity=0.059 Sum_probs=18.5
Q ss_pred hhhhhhhhccccCCCCchhHHHHHHHH
Q psy7601 32 LMYTYVFAYYLRKNNQSVLFEDNQKDL 58 (101)
Q Consensus 32 LkwSY~faYyl~~~~~~~lFE~~Q~~l 58 (101)
=||||+||=.-....-..|.+..|.-+
T Consensus 64 gK~tYlfGdl~p~~~a~~il~~a~~Y~ 90 (116)
T PF07845_consen 64 GKWTYLFGDLDPDEDAEDILAFAALYA 90 (116)
T ss_pred CCcEEEEecCCcccCHHHHHHHHHHHH
Confidence 389999998866555566666665443
No 14
>PLN02164 sulfotransferase
Probab=30.92 E-value=76 Score=25.64 Aligned_cols=74 Identities=18% Similarity=0.295 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHh--HhhhhhhhhhccccC--CC---CchhHHHHHHHHHHHHHHHHHHHhhcCChh-hHHHHHHHHHHHH
Q psy7601 18 LKKAVDILCQCR--QTLMYTYVFAYYLRK--NN---QSVLFEDNQKDLESATEKLSEYLERDITSE-NLANIKQQVQDKY 89 (101)
Q Consensus 18 l~~A~~~L~~cR--rvLkwSY~faYyl~~--~~---~~~lFE~~Q~~lE~~vE~Ls~~le~~~~~~-~~~~~k~~v~~~t 89 (101)
+.++++..++.. .---|..+-+|+... +. ----+|++.+|+...|.+|++.|..+++++ +-...-++|+.+|
T Consensus 199 ~ee~~e~f~~g~~~~G~y~dHv~~yw~~~~~~p~~VLfl~YEDmk~D~~~~v~ria~FLG~~~s~ee~~~~~v~~ive~~ 278 (346)
T PLN02164 199 LEESFDMFCRGLSVYGPYLDHVLGYWKAYQENPDRILFLKYETMRADPLPYVKRLAEFMGYGFTAEEEEKGVVEKVVKLC 278 (346)
T ss_pred HHHHHHHHHcCCCCCCcHHHHHHHHHHHhhcCCccEEEEEHHHHHHhHHHHHHHHHHHhCCCCchhhcchHHHHHHHHHC
Confidence 345556555543 223456666766421 22 234589999999999999999999987653 2233445666666
Q ss_pred HH
Q psy7601 90 RL 91 (101)
Q Consensus 90 ~~ 91 (101)
+.
T Consensus 279 SF 280 (346)
T PLN02164 279 SF 280 (346)
T ss_pred CH
Confidence 53
No 15
>cd00238 ERp29c ERp29 and ERp38, C-terminal domain; composed of the protein disulfide isomerase (PDI)-like proteins ERp29 and ERp38. ERp29 (also called ERp28) is a ubiquitous endoplasmic reticulum (ER)-resident protein expressed in high levels in secretory cells. It contains a redox inactive TRX-like domain at the N-terminus. The expression profile of ERp29 suggests a role in secretory protein production, distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex and is essential in regulating the secretion of thyroglobulin. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase. ERp38 is a P5-like protein, first isolated from alfalfa (the cDNA clone was named G1), which contains two redox active TRX domains at the N-terminus, like human P5.
Probab=30.56 E-value=1.4e+02 Score=19.52 Aligned_cols=39 Identities=15% Similarity=0.291 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcC-ChhhHHHHHHHHHHH
Q psy7601 50 LFEDNQKDLESATEKLSEYLERDI-TSENLANIKQQVQDK 88 (101)
Q Consensus 50 lFE~~Q~~lE~~vE~Ls~~le~~~-~~~~~~~~k~~v~~~ 88 (101)
+-+..-+-+++.+++|..+++... +++...++..++--+
T Consensus 51 i~~kg~~yv~~E~~RL~~iL~~~~ls~~K~del~~R~NIL 90 (93)
T cd00238 51 ILEKGEDYVEKELARLERLLEKKGLAPEKADELTRRLNIL 90 (93)
T ss_pred HHHcchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 445556678888999999999864 787777766655443
No 16
>TIGR01827 gatC_rel Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase, subunit C, putative. This model represents a family small family related to GatC, the third subunit of an enzyme for completing the charging of tRNA(Gln) by amidating the Glu-tRNA(Gln). The few known archaea that contain a member of this family appear to produce Asn-tRNA(Asn) by an analogous amidotransferase reaction. This protein is proposed to substitute for GatC in the charging of both tRNAs.
Probab=30.06 E-value=62 Score=20.55 Aligned_cols=18 Identities=39% Similarity=0.374 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHhh
Q psy7601 54 NQKDLESATEKLSEYLER 71 (101)
Q Consensus 54 ~Q~~lE~~vE~Ls~~le~ 71 (101)
.|+++|.-++++|+.|+.
T Consensus 2 ~~~~~~~~~~~~~e~L~e 19 (73)
T TIGR01827 2 ILKEAEEILEEFSERLED 19 (73)
T ss_pred hHHHHHHHHHHHHHHHHc
Confidence 588999999999999976
No 17
>PF07417 Crl: Transcriptional regulator Crl; InterPro: IPR009986 This family contains the bacterial transcriptional regulator Crl (approximately 130 residues long). This is a transcriptional regulator of the csgA curlin subunit gene for curli fibres that are found on the surface of certain bacteria [].These proteins bind to the sigma-S subunit of RNA polymerase, activating expression of sigma-S-regulated genes. They also stimulate RNA polymerase holoenzyme formation and may bind to several other sigma factors, such as sigma-70 and sigma-32.; GO: 0016987 sigma factor activity, 0045893 positive regulation of transcription, DNA-dependent, 0005737 cytoplasm; PDB: 3RPJ_A.
Probab=29.39 E-value=83 Score=22.31 Aligned_cols=40 Identities=28% Similarity=0.502 Sum_probs=22.0
Q ss_pred hhhhhhhccccCCC--CchhHHHHHHHHHHHHHH----HHHHHhhc
Q psy7601 33 MYTYVFAYYLRKNN--QSVLFEDNQKDLESATEK----LSEYLERD 72 (101)
Q Consensus 33 kwSY~faYyl~~~~--~~~lFE~~Q~~lE~~vE~----Ls~~le~~ 72 (101)
-++|-+|-|-..|+ ...|=...|+++++.++. |+.+|+..
T Consensus 66 ~y~Y~~Glydk~G~W~~~~i~~~~~~~v~~Tl~~Fh~kL~~~L~~~ 111 (125)
T PF07417_consen 66 EYRYQFGLYDKEGNWQAEKIKKEVQEEVERTLRDFHQKLVELLEEE 111 (125)
T ss_dssp EEEEEEEEE-TTS-EES----HHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred EEEEeeccccCCCCeeecCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788899987774 333336666666666655 55565553
No 18
>PF07197 DUF1409: Protein of unknown function (DUF1409); InterPro: IPR010811 This represents a short conserved region (approximately 50 residues long), sometimes repeated, within a number of hypothetical Oryza sativa proteins of unknown function.
Probab=28.52 E-value=1.4e+02 Score=17.97 Aligned_cols=23 Identities=0% Similarity=-0.106 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhh
Q psy7601 77 NLANIKQQVQDKYRLVKIQLKYS 99 (101)
Q Consensus 77 ~~~~~k~~v~~~t~~v~~r~~~~ 99 (101)
.+.+-.+++++...+++..+-+|
T Consensus 27 ~i~~e~~~l~~~~~~lEq~~~KL 49 (51)
T PF07197_consen 27 QIPDELAKLATPAVYLEQHQFKL 49 (51)
T ss_pred HhhHHHHHhcChHHHHHHHHHHh
Confidence 45555689999999999887665
No 19
>PF10835 DUF2573: Protein of unknown function (DUF2573); InterPro: IPR020393 This entry contains proteins with no known function.
Probab=28.52 E-value=1.8e+02 Score=19.20 Aligned_cols=27 Identities=26% Similarity=0.313 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCChhhH
Q psy7601 52 EDNQKDLESATEKLSEYLERDITSENL 78 (101)
Q Consensus 52 E~~Q~~lE~~vE~Ls~~le~~~~~~~~ 78 (101)
+..|.+++.-||+..++|-.+-+++..
T Consensus 2 ~~l~eq~dgLveKytELL~Ge~~~e~~ 28 (82)
T PF10835_consen 2 EKLQEQFDGLVEKYTELLLGETSPEMK 28 (82)
T ss_pred hHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 357889999999999998776554433
No 20
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=28.48 E-value=1.4e+02 Score=24.38 Aligned_cols=46 Identities=20% Similarity=0.276 Sum_probs=33.2
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHhhcCC------hhhHHHHHHHHHHHHHHHHHH
Q psy7601 47 QSVLFEDNQKDLESATEKLSEYLERDIT------SENLANIKQQVQDKYRLVKIQ 95 (101)
Q Consensus 47 ~~~lFE~~Q~~lE~~vE~Ls~~le~~~~------~~~~~~~k~~v~~~t~~v~~r 95 (101)
.+++. ++++.|-.+++.|+. |+|.+ .++|.++|.++.++.+-|.+.
T Consensus 103 DQEVL-dMh~FlreAL~rLrq--eePq~lqa~V~td~F~E~k~rLQ~L~scItq~ 154 (324)
T PF12126_consen 103 DQEVL-DMHGFLREALERLRQ--EEPQNLQAAVRTDGFDEFKARLQDLVSCITQG 154 (324)
T ss_pred hHHHH-HHHHHHHHHHHHhhh--hcCcccccceecccHHHHHHHHHHHHHHHhcC
Confidence 34444 466778888888887 55532 467999999999998877643
No 21
>KOG4234|consensus
Probab=27.93 E-value=1.9e+02 Score=22.88 Aligned_cols=48 Identities=15% Similarity=0.145 Sum_probs=35.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHHHHHHhh
Q psy7601 48 SVLFEDNQKDLESATEKLSEYLERDITSENLANIKQQVQDKYRLVKIQLKYS 99 (101)
Q Consensus 48 ~~lFE~~Q~~lE~~vE~Ls~~le~~~~~~~~~~~k~~v~~~t~~v~~r~~~~ 99 (101)
.++.|.. ..++.++|++-+++|.+.. ....|..++.+--.+..|+.+|
T Consensus 175 Aeayek~-ek~eealeDyKki~E~dPs---~~ear~~i~rl~~~i~ernEkm 222 (271)
T KOG4234|consen 175 AEAYEKM-EKYEEALEDYKKILESDPS---RREAREAIARLPPKINERNEKM 222 (271)
T ss_pred HHHHHhh-hhHHHHHHHHHHHHHhCcc---hHHHHHHHHhcCHHHHHHHHHH
Confidence 4666766 7889999999999998742 3366777777777777777665
No 22
>PF02970 TBCA: Tubulin binding cofactor A; InterPro: IPR004226 The folding pathway of tubulins includes highly specific interactions with a series of cofactors (A, B, C, D and E) after they are released from the eukaryotic chaperonin CCT. Cofactors A and D capture and stabilise tubulin in a quasi-native conformation. Cofactor E binds to the cofactor D-tubulin complex, and interaction with cofactor C then causes the release of tubulin poypeptides in the native state. This family is the tubulin-specific chaperone A.; GO: 0051082 unfolded protein binding, 0007021 tubulin complex assembly, 0005874 microtubule; PDB: 3MXZ_A 1QSD_A 1H7C_A.
Probab=27.64 E-value=93 Score=20.27 Aligned_cols=35 Identities=37% Similarity=0.529 Sum_probs=25.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHH
Q psy7601 48 SVLFEDNQKDLESATEKLSEYLERDITSENLANIK 82 (101)
Q Consensus 48 ~~lFE~~Q~~lE~~vE~Ls~~le~~~~~~~~~~~k 82 (101)
+.++-+.+..|..++++|..+++..-+.++....|
T Consensus 54 ~~mipd~~~RL~~a~~~L~~~l~~~~~~ee~~~ak 88 (90)
T PF02970_consen 54 KMMIPDCQQRLEKAVEDLEEFLEEEEGLEELEEAK 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHCcCchhHHHHh
Confidence 56778888899999999999987654444444443
No 23
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=27.44 E-value=67 Score=21.43 Aligned_cols=35 Identities=31% Similarity=0.460 Sum_probs=23.3
Q ss_pred hhccccCC--CCchhHHHHHHHHHHHHHHHHHHHhhc
Q psy7601 38 FAYYLRKN--NQSVLFEDNQKDLESATEKLSEYLERD 72 (101)
Q Consensus 38 faYyl~~~--~~~~lFE~~Q~~lE~~vE~Ls~~le~~ 72 (101)
-|||.+.+ ...++++..-..++..+++|.+-+...
T Consensus 76 ~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l 112 (126)
T TIGR00293 76 SGYYVEKDAEEAIEFLKKRIEELEKAIEKLQEALAEL 112 (126)
T ss_pred CCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45665443 356778887777777777777766543
No 24
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. These metallopeptidases belong to MEROPS peptidase family M16 (clan ME). They include proteins, which are classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. The peptidases in this group of sequences include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The mitochondrial processing peptidase consists of two structurally related domains. One is the active peptidase whereas the other, the C-terminal region, is inactive. The two domains hold the substrate like a clamp [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B 1SQX_B 1NU1_B 1L0L_B 2FYU_B ....
Probab=26.27 E-value=1.6e+02 Score=19.09 Aligned_cols=33 Identities=24% Similarity=0.369 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHH
Q psy7601 53 DNQKDLESATEKLSEYLERDITSENLANIKQQV 85 (101)
Q Consensus 53 ~~Q~~lE~~vE~Ls~~le~~~~~~~~~~~k~~v 85 (101)
+.++-++...+.|..+.+.+++++++...|..+
T Consensus 152 ~~~~~~~~~~~~l~~l~~~~~s~~el~~~k~~L 184 (184)
T PF05193_consen 152 NLDEAIEAILQELKRLREGGISEEELERAKNQL 184 (184)
T ss_dssp GHHHHHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence 566677777788888888889999999888764
No 25
>KOG2196|consensus
Probab=25.77 E-value=3.4e+02 Score=21.48 Aligned_cols=52 Identities=19% Similarity=0.111 Sum_probs=35.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhcCC---hhhHHHHHHHHHHHHHHHHHHHHhh
Q psy7601 48 SVLFEDNQKDLESATEKLSEYLERDIT---SENLANIKQQVQDKYRLVKIQLKYS 99 (101)
Q Consensus 48 ~~lFE~~Q~~lE~~vE~Ls~~le~~~~---~~~~~~~k~~v~~~t~~v~~r~~~~ 99 (101)
-++-...|.+||..+..|...++.+.. ......-|++....+..++.+.+.|
T Consensus 136 L~~I~sqQ~ELE~~L~~lE~k~~~~~g~~~~~~~D~eR~qty~~a~nidsqLk~l 190 (254)
T KOG2196|consen 136 LEFILSQQQELEDLLDPLETKLELQSGHTYLSRADVEREQTYKMAENIDSQLKRL 190 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 456678899999999999999988642 1233444666666666666655543
No 26
>PRK10984 DNA-binding transcriptional regulator Crl; Provisional
Probab=22.48 E-value=1.5e+02 Score=21.11 Aligned_cols=38 Identities=29% Similarity=0.505 Sum_probs=24.5
Q ss_pred hhhhhhhhccccCCC-------CchhHHHHHHHHHHHHHHHHHHH
Q psy7601 32 LMYTYVFAYYLRKNN-------QSVLFEDNQKDLESATEKLSEYL 69 (101)
Q Consensus 32 LkwSY~faYyl~~~~-------~~~lFE~~Q~~lE~~vE~Ls~~l 69 (101)
.-++|-+|-|-..|+ ++++-|..-.-++..-++|+.+|
T Consensus 67 F~y~Y~~Glydk~G~W~~~~i~~~~~~e~v~~Tl~~Fh~kL~~~L 111 (127)
T PRK10984 67 FTYSYQFGLFDKEGNWVAEPIKDKEVVERLEHTLREFHEKLRELL 111 (127)
T ss_pred EEEEEecccccCCCCeeeccCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888999977764 34555555555555556666666
No 27
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=21.72 E-value=2.2e+02 Score=17.95 Aligned_cols=47 Identities=19% Similarity=0.264 Sum_probs=31.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHHHHHH
Q psy7601 49 VLFEDNQKDLESATEKLSEYLERDITSENLANIKQQVQDKYRLVKIQLK 97 (101)
Q Consensus 49 ~lFE~~Q~~lE~~vE~Ls~~le~~~~~~~~~~~k~~v~~~t~~v~~r~~ 97 (101)
.-|+..|...+.+...|..+++..- .+-..++.+|.+++.-|...-.
T Consensus 17 ~~y~~q~~~Wq~sy~~Lq~~~~~t~--~~~a~L~~qv~~Ls~qv~~Ls~ 63 (70)
T PF04899_consen 17 QSYEKQQQEWQSSYADLQHMFEQTS--QENAALSEQVNNLSQQVQRLSE 63 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 4466677777777888888877653 3445677788887777765443
No 28
>KOG3470|consensus
Probab=20.31 E-value=3.1e+02 Score=18.99 Aligned_cols=39 Identities=23% Similarity=0.325 Sum_probs=28.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHH
Q psy7601 48 SVLFEDNQKDLESATEKLSEYLERDITSENLANIKQQVQ 86 (101)
Q Consensus 48 ~~lFE~~Q~~lE~~vE~Ls~~le~~~~~~~~~~~k~~v~ 86 (101)
+.+.-+.|..|+++++.|-..+...-..++..++++-..
T Consensus 60 ~~mlPD~~~RL~~a~~DLe~~l~~~~~~ee~~e~~~A~~ 98 (107)
T KOG3470|consen 60 RMMLPDSQRRLRKAYEDLESILADEQYLEETPELKSANT 98 (107)
T ss_pred HHHChHHHHHHHHHHHHHHHHHhcccchhccHHHHHHHH
Confidence 456678899999999999999987434455555555433
No 29
>PRK00810 nifW nitrogenase stabilizing/protective protein; Provisional
Probab=20.04 E-value=39 Score=23.45 Aligned_cols=48 Identities=19% Similarity=0.359 Sum_probs=24.4
Q ss_pred hhhcccchhHHHHHHHHHHHHHHhHhhhhhhhhhccccCC-CCchhHHHHHH
Q psy7601 6 FAYYLRKNNQSVLKKAVDILCQCRQTLMYTYVFAYYLRKN-NQSVLFEDNQK 56 (101)
Q Consensus 6 f~~~Ls~~d~~fl~~A~~~L~~cRrvLkwSY~faYyl~~~-~~~~lFE~~Q~ 56 (101)
|+.||...+..-+.++ ..+..||+.|+-+|. =|...+ -...+|.=.|.
T Consensus 45 F~~yL~~~~~~~~~e~-~~~~~yr~aL~~AY~--dF~~Stp~~ekvFKVfkd 93 (113)
T PRK00810 45 MGQYLAQEDFAGLPEA-EARARCRAVLERAYA--DFVASSPLDQRVFKVLKD 93 (113)
T ss_pred HHHHHHhcccCCCCHH-HHHHHHHHHHHHHHH--HHccCCHhHHHHHHHHHh
Confidence 4555554443333333 446778888887664 233222 23455554443
No 30
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=20.01 E-value=2.9e+02 Score=19.11 Aligned_cols=50 Identities=16% Similarity=0.206 Sum_probs=28.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcCC------------hhhHHHHHHHHHHHHHHHHHHHHh
Q psy7601 49 VLFEDNQKDLESATEKLSEYLERDIT------------SENLANIKQQVQDKYRLVKIQLKY 98 (101)
Q Consensus 49 ~lFE~~Q~~lE~~vE~Ls~~le~~~~------------~~~~~~~k~~v~~~t~~v~~r~~~ 98 (101)
++++..+..|...|+.-++-+...+. .+.+..+|..+......+..|+..
T Consensus 47 ~~~~~~~~~L~~vV~eh~q~Fn~sI~sy~~i~~~i~~sq~~i~~lK~~L~~ak~~L~~~~~e 108 (142)
T PF04048_consen 47 ELKKRIEKALQEVVNEHYQGFNSSIGSYSQILSSISESQERIRELKESLQEAKSLLGCRREE 108 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 44444555555555555555544431 346777777777777766665544
Done!