RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7601
(101 letters)
>gnl|CDD|216059 pfam00685, Sulfotransfer_1, Sulfotransferase domain.
Length = 254
Score = 28.1 bits (63), Expect = 0.67
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 33 MYTYVFAYYLRKNNQSVLF---EDNQKDLESATEKLSEYLERDITSENLANI 81
+ +V ++ + ++LF ED +KD +K++E+L +T E L I
Sbjct: 142 YFDHVKGWWKLRPPGNILFLRYEDLKKDPRGEIKKIAEFLGIPLTEEELDKI 193
>gnl|CDD|224426 COG1509, KamA, Lysine 2,3-aminomutase [Amino acid transport and
metabolism].
Length = 369
Score = 28.0 bits (63), Expect = 0.84
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Query: 14 NQSVLKKAV----DILCQCRQTLMYTYVFAYYL 42
NQSVL + V ++L + + L V YYL
Sbjct: 254 NQSVLLRGVNDDPEVLKELSRALFDAGVKPYYL 286
>gnl|CDD|222115 pfam13419, HAD_2, Haloacid dehalogenase-like hydrolase.
Length = 176
Score = 26.9 bits (60), Expect = 1.6
Identities = 7/31 (22%), Positives = 13/31 (41%)
Query: 33 MYTYVFAYYLRKNNQSVLFEDNQKDLESATE 63
Y V + + +D+ +DLE+A
Sbjct: 138 AYERVLERLGLPPEEILFIDDSPEDLEAARA 168
>gnl|CDD|178642 PLN03094, PLN03094, Substrate binding subunit of ER-derived-lipid
transporter; Provisional.
Length = 370
Score = 27.1 bits (60), Expect = 1.6
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 11/62 (17%)
Query: 42 LRKNNQSVLFEDNQKDLESA------TEKLSEYLERDITS-----ENLANIKQQVQDKYR 90
LR+ N S+L +N + L + T K E + DI+ N+KQ +Q R
Sbjct: 309 LRRLNSSILTPENTELLRQSIYTLTKTLKHIESISSDISGFTGDEATRRNLKQLIQSLSR 368
Query: 91 LV 92
L+
Sbjct: 369 LL 370
>gnl|CDD|169390 PRK08340, PRK08340, glucose-1-dehydrogenase; Provisional.
Length = 259
Score = 26.7 bits (59), Expect = 1.8
Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 42 LRKNNQSVLFEDNQKDLESATEKLSEYLERDITSENLA---NIKQQVQDKYRLV 92
L+K + V+ N+++LE A ++L EY E +L+ ++K V++ + L+
Sbjct: 21 LKKGARVVISSRNEENLEKALKELKEYGEVYAVKADLSDKDDLKNLVKEAWELL 74
>gnl|CDD|218985 pfam06315, AceK, Isocitrate dehydrogenase kinase/phosphatase
(AceK). This family consists of several bacterial
isocitrate dehydrogenase kinase/phosphatase (AceK)
proteins (EC:2.7.1.116).
Length = 562
Score = 26.4 bits (59), Expect = 3.2
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 82 KQQVQDKYRLVK 93
+ V+DKY+LVK
Sbjct: 344 RATVKDKYQLVK 355
>gnl|CDD|234204 TIGR03423, pbp2_mrdA, penicillin-binding protein 2. Members of
this protein family are penicillin-binding protein 2
(PBP-2), a protein whose gene (designated pbpA or mrdA)
generally is found next to the gene for RodA, a protein
required for rod (bacillus) shape in many bacteria.
PBP-2 acts as a transpeptidase for cell elongation
(hence, rod-shape) [Cell envelope, Biosynthesis and
degradation of murein sacculus and peptidoglycan].
Length = 592
Score = 26.3 bits (59), Expect = 3.3
Identities = 11/43 (25%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 56 KDLESATEKLSEYLERDITSENLANIKQQVQDKYRLVKIQLKY 98
DL++ ++L++ L D+ E++A ++++ R I LK
Sbjct: 78 DDLDATLDRLAKLL--DLDPEDIARFLKELKRSRRFEPIPLKS 118
>gnl|CDD|235032 PRK02362, PRK02362, ski2-like helicase; Provisional.
Length = 737
Score = 26.1 bits (58), Expect = 3.4
Identities = 8/49 (16%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 42 LRKNNQSVLFEDNQKDLESATEKLSEYLERDITSEN---LANIKQQVQD 87
L + Q ++F ++++ E ++ + L++ +T+ LA + +++++
Sbjct: 240 LEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIRE 288
>gnl|CDD|181507 PRK08626, PRK08626, fumarate reductase flavoprotein subunit;
Provisional.
Length = 657
Score = 25.7 bits (57), Expect = 4.4
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 5/37 (13%)
Query: 40 YYLRKNNQSVLFED-----NQKDLESATEKLSEYLER 71
+ ++ Q ++ E N +LE A ++L E LER
Sbjct: 465 FEIKNEMQEIMMEKVGIFRNGPELEKAVKELQELLER 501
>gnl|CDD|221611 pfam12508, DUF3714, Protein of unknown function (DUF3714). This
domain family is found in bacteria, and is approximately
200 amino acids in length.
Length = 200
Score = 25.7 bits (57), Expect = 4.6
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 81 IKQQVQDKYRLVKIQLKYSYK 101
Q + K R VK+ LK Y+
Sbjct: 180 TSQYISKKIRKVKVTLKAGYR 200
>gnl|CDD|235089 PRK02946, aceK, bifunctional isocitrate dehydrogenase
kinase/phosphatase protein; Validated.
Length = 575
Score = 25.2 bits (56), Expect = 6.3
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 82 KQQVQDKYRLVK 93
+ QV+ KY+LVK
Sbjct: 351 RAQVKAKYQLVK 362
>gnl|CDD|130785 TIGR01724, hmd_rel, H2-forming
N(5),N(10)-methenyltetrahydromethanopterin
dehydrogenase-related protein. This model represents a
sister clade to the authenticated coenzyme
F420-dependent
N(5),N(10)-methenyltetrahydromethanopterin reductase
(HMD) of TIGR01723. Two members, designated HmdII and
HmdIII, are found. Members are restricted to
methanogens, but the function is unknown [Unknown
function, Enzymes of unknown specificity].
Length = 341
Score = 25.3 bits (55), Expect = 7.3
Identities = 11/42 (26%), Positives = 22/42 (52%)
Query: 42 LRKNNQSVLFEDNQKDLESATEKLSEYLERDITSENLANIKQ 83
L K+ +S+ D Q+DL++A + +S+ + + A I
Sbjct: 265 LVKSARSMHLLDRQEDLDAALKIISDLDDDVMKWIEGAEINH 306
>gnl|CDD|179543 PRK03137, PRK03137, 1-pyrroline-5-carboxylate dehydrogenase;
Provisional.
Length = 514
Score = 25.3 bits (56), Expect = 7.6
Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 15/49 (30%)
Query: 52 EDNQKDLESATEKLSEYLERD---------------ITSENLANIKQQV 85
E+N + E A +K+ + L +D I S N AN + V
Sbjct: 16 EENVEAFEEALKKVEKELGQDYPLIIGGERITTEDKIVSINPANKSEVV 64
>gnl|CDD|143398 cd07079, ALDH_F18-19_ProA-GPR, Gamma-glutamyl phosphate reductase
(GPR), aldehyde dehydrogenase families 18 and 19.
Gamma-glutamyl phosphate reductase (GPR), a L-proline
biosynthetic pathway (PBP) enzyme that catalyzes the
NADPH dependent reduction of L-gamma-glutamyl
5-phosphate into L-glutamate 5-semialdehyde and
phosphate. The glutamate route of the PBP involves two
enzymatic steps catalyzed by gamma-glutamyl kinase (GK,
EC 2.7.2.11) and GPR (EC 1.2.1.41). These enzymes are
fused into the bifunctional enzyme, ProA or
delta(1)-pyrroline-5-carboxylate synthetase (P5CS) in
plants and animals, whereas they are separate enzymes
in bacteria and yeast. In humans, the P5CS (ALDH18A1),
an inner mitochondrial membrane enzyme, is essential to
the de novo synthesis of the amino acids proline and
arginine. Tomato (Lycopersicon esculentum) has both the
prokaryotic-like polycistronic operons encoding GK and
GPR (PRO1, ALDH19) and the full-length, bifunctional
P5CS (PRO2, ALDH18B1).
Length = 406
Score = 25.1 bits (56), Expect = 8.7
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 45 NNQSVLFEDNQKDLESATEK-LSE-YLERD-ITSENLANI 81
N+ + E N KDL +A E LSE L+R +T E + +
Sbjct: 35 ANRDEILEANAKDLAAAREAGLSEALLDRLLLTPERIEAM 74
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.132 0.363
Gapped
Lambda K H
0.267 0.0711 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,746,401
Number of extensions: 381895
Number of successful extensions: 614
Number of sequences better than 10.0: 1
Number of HSP's gapped: 614
Number of HSP's successfully gapped: 60
Length of query: 101
Length of database: 10,937,602
Length adjustment: 67
Effective length of query: 34
Effective length of database: 7,965,884
Effective search space: 270840056
Effective search space used: 270840056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.2 bits)