RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7601
(101 letters)
>1zd1_A Sulfotransferase 4A1; SGC, SULT4A1, structural genomics, structural
genomics conso transferase; 2.24A {Homo sapiens}
Length = 284
Score = 37.8 bits (88), Expect = 1e-04
Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 26 CQCRQTLMYTYVFAYYLRKNNQSVLF---EDNQKDLESATEKLSEYLERDITSENLANIK 82
+ + +V ++ + + +VLF ED +DL + E+L+ +L L +
Sbjct: 168 DKLGYGSWFEHVQEFWEHRMDSNVLFLKYEDMHRDLVTMVEQLARFLGVSCDKAQLEALT 227
Query: 83 QQ 84
+
Sbjct: 228 EH 229
>1ls6_A ARYL sulfotransferase; SULT 1A1, PAP, P-nitrophenol, positive
cooperativity, two substrate binding sites; HET: A3P
NPO; 1.90A {Homo sapiens} SCOP: c.37.1.5 PDB: 2d06_A*
3u3o_A* 3u3k_A* 3u3m_A* 3u3j_A* 3u3r_A* 1z28_A* 3qvv_A*
3qvu_A* 1z29_A* 1cjm_A 2a3r_A*
Length = 295
Score = 37.9 bits (88), Expect = 2e-04
Identities = 8/48 (16%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 37 VFAYYLRKNNQSVLF---EDNQKDLESATEKLSEYLERDITSENLANI 81
V ++ VL+ ED +++ + +K+ E++ + E + +
Sbjct: 176 VQEWWELSRTHPVLYLFYEDMKENPKREIQKILEFVGHSLPEETVDFM 223
>1q1q_A SULT2B1A, sulfotransferase family, cytosolic, 2B, member 1 isoform
A; pregnenolone, PAP; HET: A3P NHE; 2.91A {Homo sapiens}
SCOP: c.37.1.5
Length = 350
Score = 36.8 bits (85), Expect = 4e-04
Identities = 12/48 (25%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 37 VFAYYLRKNNQSVLF---EDNQKDLESATEKLSEYLERDITSENLANI 81
+ + K + LF E+ Q+DL+ + E++ +L R + E L ++
Sbjct: 178 IKGWLRMKGKDNFLFITYEELQQDLQGSVERICGFLGRPLGKEALGSV 225
>2zpt_X Tyrosine-ester sulfotransferase; SULT1D1, catecholamine,
sulfonation; HET: A3P GOL; 1.15A {Mus musculus} PDB:
2zvp_X* 2zvq_X* 2zyt_X* 2zyu_X* 2zyv_X* 2zyw_X*
Length = 295
Score = 35.9 bits (83), Expect = 0.001
Identities = 12/48 (25%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 37 VFAYYLRKNNQSVLF---EDNQKDLESATEKLSEYLERDITSENLANI 81
V +++ ++ +L+ ED +++ + +K+ ++LE+DI E L I
Sbjct: 176 VKSWWEKRKEYRILYLFYEDMKENPKCEIQKILKFLEKDIPEEILNKI 223
>3ckl_A Sulfotransferase family cytosolic 1B member 1; SULT1B1, human
cytosolic sulfotransferase, resveratrol, SGC, cytoplasm,
lipid metabolism; HET: STL A3P; 2.00A {Homo sapiens}
PDB: 2z5f_A*
Length = 298
Score = 35.6 bits (82), Expect = 0.001
Identities = 13/51 (25%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 34 YTYVFAYYLRKNNQSVLF---EDNQKDLESATEKLSEYLERDITSENLANI 81
+T+V ++ +K +LF ED +++ + +K+ +LE+++ E L I
Sbjct: 176 FTHVKNWWKKKEEHPILFLYYEDMKENPKEEIKKIIRFLEKNLNDEILDRI 226
>3bfx_A Sulfotransferase 1C2; PAP, structural genomics, PSI, protein
structure initiative, structural genomics consortium,
SGC, alternative splicing; HET: A3P; 1.80A {Homo
sapiens} SCOP: c.37.1.5
Length = 296
Score = 35.5 bits (82), Expect = 0.001
Identities = 10/49 (20%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 36 YVFAYYLRKNNQSVLF---EDNQKDLESATEKLSEYLERDITSENLANI 81
+V ++ K+ +LF ED ++D + K+ +++ + + L I
Sbjct: 176 HVKGWWEMKDRHQILFLFYEDIKRDPKHEIRKVMQFMGKKVDETVLDKI 224
>1q20_A SULT2B1B, sulfotransferase family, cytosolic, 2B, member 1 isoform
B; pregnenolone, cholesterol, PAP; HET: A3P PLO; 2.30A
{Homo sapiens} SCOP: c.37.1.5 PDB: 1q1z_A* 1q22_A*
Length = 299
Score = 35.5 bits (82), Expect = 0.001
Identities = 12/48 (25%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 37 VFAYYLRKNNQSVLF---EDNQKDLESATEKLSEYLERDITSENLANI 81
+ + K + LF E+ Q+DL+ + E++ +L R + E L ++
Sbjct: 180 IKGWLRMKGKDNFLFITYEELQQDLQGSVERICGFLGRPLGKEALGSV 227
>2reo_A Putative sulfotransferase 1C3; sulfate conjugation, PAP, structural
genom consortium, SGC; HET: A3P; 2.65A {Homo sapiens}
PDB: 2h8k_A*
Length = 305
Score = 35.5 bits (82), Expect = 0.001
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 37 VFAYYLRKNNQSVLF---EDNQKDLESATEKLSEYLERDITSENLANI 81
V ++ K+ +L+ ED +KD + EK+ ++LE+DI+ E L I
Sbjct: 186 VKGWWAAKDMHRILYLFYEDIKKDPKREIEKILKFLEKDISEEILNKI 233
>1j99_A Alcohol sulfotransferase; dehydroepiandosterone, DHEA; HET: AND;
1.99A {Homo sapiens} SCOP: c.37.1.5 PDB: 1ov4_A* 3f3y_A*
2qp3_A* 2qp4_A* 1efh_A*
Length = 293
Score = 35.0 bits (81), Expect = 0.001
Identities = 9/51 (17%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 34 YTYVFAYYLRKNNQSVLF---EDNQKDLESATEKLSEYLERDITSENLANI 81
+ ++ + + ++ L E+ ++D EK+ ++L + + E L I
Sbjct: 172 FDHIHGWMPMREEKNFLLLSYEELKQDTGRTIEKICQFLGKTLEPEELNLI 222
>2gwh_A Sulfotransferase 1C2; sulfate conjugation, pentachlorophenol, PA
pesticide, structural genomics, structural genomics
consort transferase; HET: A3P PCI; 1.80A {Homo sapiens}
PDB: 2ad1_A*
Length = 298
Score = 34.8 bits (80), Expect = 0.002
Identities = 11/56 (19%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 34 YTYVFAYYLRKNNQSVLF---EDNQKDLESATEKLSEYLERDITSENLANIKQQVQ 86
+ +V ++ K+ +L+ ED +K+ + +KL+E++ + + + L I
Sbjct: 176 HEHVKGWWEAKDKHRILYLFYEDMKKNPKHEIQKLAEFIGKKLDDKVLDKIVHYTS 231
>1aqu_A EST, estrogen sulfotransferase; PAP, sulfonation, 17-beta
estradiol, steroid-binding; HET: A3P EST; 1.60A {Mus
musculus} SCOP: c.37.1.5 PDB: 1aqy_A* 1bo6_A* 1hy3_A*
1g3m_A*
Length = 297
Score = 34.8 bits (80), Expect = 0.002
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 37 VFAYYLRKNNQSVLF---EDNQKDLESATEKLSEYLERDITSENLANI 81
V A++ + N VLF ED ++D+ KL E+LER ++E + I
Sbjct: 178 VKAWWEKSKNSRVLFMFYEDMKEDIRREVVKLIEFLERKPSAELVDRI 225
>1fmj_A Retinol dehydratase; sulfotransferase, adenosine 3',5'-
diphosphate; HET: A3P RTL; 2.00A {Spodoptera frugiperda}
SCOP: c.37.1.5 PDB: 1fml_A* 1x8l_A* 1x8k_A* 1x8j_A*
Length = 351
Score = 33.8 bits (77), Expect = 0.005
Identities = 10/51 (19%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 34 YTYVFAYYLRKNNQSVLF---EDNQKDLESATEKLSEYLERDITSENLANI 81
+ +V + ++++ ++LF ED KDL +++++L + ++ E + +
Sbjct: 228 FEHVKEAWAKRHDPNMLFLFYEDYLKDLPGCIARIADFLGKKLSEEQIQRL 278
>1q44_A RARO47, steroid sulfotransferase, AT2G03760/; APO, structu
genomics, protein structure initiative, center for
eukaryot structural genomics; 1.90A {Arabidopsis
thaliana} SCOP: c.37.1.5 PDB: 2q3m_A
Length = 326
Score = 30.6 bits (69), Expect = 0.066
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 9/58 (15%)
Query: 28 CRQTLMYTYVFAYYL------RKNNQSVLF---EDNQKDLESATEKLSEYLERDITSE 76
C + + + L R+N VLF E+ +K E ++++E+LE E
Sbjct: 196 CEGKFIGGPFWDHILEYWYASRENPNKVLFVTYEELKKQTEVEMKRIAEFLECGFIEE 253
>1q4k_B Serine/threonine-protein kinase PLK; six-stranded anti-parallel
beta sheet with one alpha helix, transferase; HET: TPO;
2.30A {Homo sapiens} SCOP: d.223.1.2 d.223.1.2
Length = 259
Score = 28.3 bits (62), Expect = 0.40
Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 36 YVFAYYLRKNNQSVLFEDNQKDLESATEKLSEYLERD--ITSENLANIKQQVQDKYRLVK 93
Y Y L N+ VLF D+ + + +Y+ERD + +++ + K L+K
Sbjct: 77 YGLGYQLCDNSVGVLFNDSTRLILYNDGDSLQYIERDGTESYLTVSSHPNSLMKKITLLK 136
Query: 94 IQLKY 98
Y
Sbjct: 137 YFRNY 141
>1y7p_A Hypothetical protein AF1403; structural genomics, protein
structure initiative, PSI, alpha-beta-alpha sandwich;
HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7
d.58.18.12
Length = 223
Score = 27.6 bits (61), Expect = 0.55
Identities = 9/58 (15%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
Query: 12 KNNQSVLKKAVDILCQCRQTLMYT--YVFAYYLRKNNQSVLFEDNQKDLESATEKLSE 67
+N VL+ I+ + + + ++ + + + FE D E E++
Sbjct: 12 ENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEGGDFEKILERVKT 69
>3p34_A Serine/threonine-protein kinase PLK1; phosphoprotein binding
domain, PLK1, kinase, transferase; HET: TPO; 1.40A {Homo
sapiens} PDB: 3p2z_A* 3p2w_A* 3p35_A* 3p36_A* 3p37_A*
3q1i_A* 2ogq_A 2ojs_A* 2ojx_A 3bzi_A* 3mhn_A* 3mhq_A
3mq8_B* 4dfw_A* 1q4o_A* 1umw_A* 3hik_A* 3rq7_A* 3fvh_A*
3hih_A ...
Length = 232
Score = 27.4 bits (60), Expect = 0.75
Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 36 YVFAYYLRKNNQSVLFEDNQKDLESATEKLSEYLERD--ITSENLANIKQQVQDKYRLVK 93
Y Y L N+ VLF D+ + + +Y+ERD + +++ + K L+K
Sbjct: 59 YGLGYQLCDNSVGVLFNDSTRLILYNDGDSLQYIERDGTESYLTVSSHPNSLMKKITLLK 118
Query: 94 IQLKY 98
Y
Sbjct: 119 YFRNY 123
>3v4v_A Integrin alpha-4; cell adhesion, madcam-1, membrane; HET: NAG BMA
MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_A*
Length = 597
Score = 26.7 bits (58), Expect = 1.3
Identities = 8/69 (11%), Positives = 22/69 (31%)
Query: 31 TLMYTYVFAYYLRKNNQSVLFEDNQKDLESATEKLSEYLERDITSENLANIKQQVQDKYR 90
L Y + + + + + T + + A +++ V+D
Sbjct: 481 VLFYNMSLDVNRKAESPPRFYFSSNGTSDVITGSIQVSSREANCRTHQAFMRKDVRDILT 540
Query: 91 LVKIQLKYS 99
++I+ Y
Sbjct: 541 PIQIEAAYH 549
>2h5g_A Delta 1-pyrroline-5-carboxylate synthetase; dehydrogenase,
structural genomics, structural genomics CONS SGC,
oxidoreductase; 2.25A {Homo sapiens}
Length = 463
Score = 26.4 bits (59), Expect = 1.7
Identities = 10/45 (22%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 45 NNQSVLFEDNQKDLESATEKLSE-YLER-DITSENLANIKQQVQD 87
+ + + N+KDLE A +L+ L+R +++ L ++ ++
Sbjct: 66 DQRDEILLANKKDLEEAEGRLAAPLLKRLSLSTSKLNSLAIGLRQ 110
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.4 bits (57), Expect = 1.8
Identities = 9/54 (16%), Positives = 20/54 (37%), Gaps = 5/54 (9%)
Query: 48 SVLFEDNQKDLESATEKLSEYLERDITSENLANI---KQQVQDKYRLVKIQLKY 98
SV + + + + + + + ++ E + +I K V RL L
Sbjct: 23 SVFEDAFVDNFD--CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSK 74
Score = 26.4 bits (57), Expect = 2.4
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 46 NQSVLFEDNQKDLESATEKLSEYLERDITSENLANIKQQVQDKYRLVK 93
S++ + + ES S YLE + EN + + + D Y + K
Sbjct: 413 KYSLVEKQPK---ESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK 457
>2ov8_A STAL; sulfotransferase, structural genomics, montr kingston
bacterial structural genomics initiative, BSGI, UN
function; 2.58A {Streptomyces toyocaensis} PDB: 2ovb_A
2ovf_A*
Length = 288
Score = 24.6 bits (54), Expect = 6.6
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 3/37 (8%)
Query: 49 VLF---EDNQKDLESATEKLSEYLERDITSENLANIK 82
VL ED +KD E K+ ++LE +
Sbjct: 176 VLAVRYEDLRKDPEGELWKVVDFLELGGRDGVADAVA 212
>1j3k_A Bifunctional dihydrofolate reductase-thymidylate synthase;
oxidoreductase, transferase; HET: WRA NDP UMP; 2.10A
{Plasmodium falciparum} SCOP: c.71.1.1 PDB: 3dg8_A*
1j3j_A* 1j3i_A* 3dga_A*
Length = 280
Score = 24.4 bits (53), Expect = 6.9
Identities = 11/58 (18%), Positives = 23/58 (39%)
Query: 34 YTYVFAYYLRKNNQSVLFEDNQKDLESATEKLSEYLERDITSENLANIKQQVQDKYRL 91
T F Y + NN+ + ++ K E + + ++D + DKY++
Sbjct: 219 TTLDFIIYKKTNNKMLNEQNCIKGEEKNNDMPLKNDDKDTCHMKKLTEFYKNVDKYKI 276
>1vlu_A Gamma-glutamyl phosphate reductase; YOR323C, structural GENO
JCSG, protein structure initiative, PSI, joint center
for S genomics; 2.29A {Saccharomyces cerevisiae} SCOP:
c.82.1.1
Length = 468
Score = 24.5 bits (54), Expect = 7.7
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 44 KNNQSVLFEDNQKDLESATEK-LSEYL 69
K N + E N+ DL A E L++ L
Sbjct: 50 KANAHAIEEANKIDLAVAKETGLADSL 76
>3mgb_A TEG12; sulfotransferase, glycopeptide, antibiotic, transferase-anti
complex; HET: GHP 3MY 3FG OMY PAP; 2.04A {Uncultured
soil bacterium} PDB: 3mgc_A* 3mg9_A* 3nib_A*
Length = 319
Score = 24.4 bits (53), Expect = 9.1
Identities = 8/38 (21%), Positives = 17/38 (44%), Gaps = 5/38 (13%)
Query: 49 VLF---EDNQKDLESATEKLSEYLE--RDITSENLANI 81
VL ED + D + ++ E+L+ + E++
Sbjct: 196 VLTMRYEDLKGDPVARFSEIVEFLDLGGPVDIEDIRRA 233
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.132 0.363
Gapped
Lambda K H
0.267 0.0517 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,360,822
Number of extensions: 62858
Number of successful extensions: 251
Number of sequences better than 10.0: 1
Number of HSP's gapped: 251
Number of HSP's successfully gapped: 44
Length of query: 101
Length of database: 6,701,793
Length adjustment: 67
Effective length of query: 34
Effective length of database: 4,831,086
Effective search space: 164256924
Effective search space used: 164256924
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.9 bits)