RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7601
         (101 letters)



>d1t0hb_ c.37.1.1 (B:) Guanylate kinase-like domain of the L-type
           calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId:
           9986]}
          Length = 219

 Score = 25.2 bits (55), Expect = 1.3
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 15/60 (25%)

Query: 11  RKNNQSVLKKAVDILCQCRQTLMYTYVFAYYLRKNNQSVLFEDNQKDLESATEKLSEYLE 70
           +  + +V   A D L QC     +              V+ ++NQ  LE A E L++YLE
Sbjct: 154 QAKHLNVQMVAADKLAQCPPQESF-------------DVILDENQ--LEDACEHLADYLE 198


>d1vlua_ c.82.1.1 (A:) Gamma-glutamyl phosphate reductase {Baker's
          yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 436

 Score = 24.0 bits (51), Expect = 4.4
 Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 1/27 (3%)

Query: 38 FAYYLRKNNQSVLFEDNQKDLESATEK 64
              L+ N  ++  E N+ DL  A E 
Sbjct: 34 IHDALKANAHAIE-EANKIDLAVAKET 59


>d1iu4a_ d.3.1.8 (A:) Microbial transglutaminase
           {Streptoverticillium mobaraense [TaxId: 35621]}
          Length = 331

 Score = 23.9 bits (51), Expect = 4.9
 Identities = 10/48 (20%), Positives = 21/48 (43%)

Query: 42  LRKNNQSVLFEDNQKDLESATEKLSEYLERDITSENLANIKQQVQDKY 89
           L   N ++  ED +    SA      + ER+  + + + +K  +  K+
Sbjct: 154 LANGNDALRNEDARSPFYSALRNTPSFKERNGGNHDPSRMKAVIYSKH 201


>d2gpia1 d.354.1.1 (A:1-90) Hypothetical protein Shew3726
          {Shewanella loihica [TaxId: 359303]}
          Length = 90

 Score = 22.8 bits (49), Expect = 5.9
 Identities = 9/19 (47%), Positives = 11/19 (57%)

Query: 49 VLFEDNQKDLESATEKLSE 67
           LFE  + D+E   EKL E
Sbjct: 56 SLFEQFRFDIEEQAEKLIE 74


>d2go7a1 c.108.1.6 (A:3-206) Hypothetical protein SP2064
           {Streptococcus pneumoniae [TaxId: 1313]}
          Length = 204

 Score = 23.2 bits (48), Expect = 6.6
 Identities = 13/70 (18%), Positives = 24/70 (34%), Gaps = 7/70 (10%)

Query: 26  CQCRQTLMYTYVFAYYLRKNNQSVLFEDNQKDLESATEK-------LSEYLERDITSENL 78
            +       TY+   Y   ++ +    D   D+E A          L    E +   + L
Sbjct: 135 VRKPSPEAATYLLDKYQLNSDNTYYIGDRTLDVEFAQNSGIQSINFLESTYEGNHRIQAL 194

Query: 79  ANIKQQVQDK 88
           A+I +  + K
Sbjct: 195 ADISRIFETK 204


>d1texa_ c.37.1.5 (A:) Stf0 sulfotransferase {Mycobacterium
           smegmatis [TaxId: 1772]}
          Length = 265

 Score = 23.5 bits (49), Expect = 6.9
 Identities = 6/49 (12%), Positives = 17/49 (34%), Gaps = 3/49 (6%)

Query: 41  YLRKNNQSVL---FEDNQKDLESATEKLSEYLERDITSENLANIKQQVQ 86
           +  + N   +   +    ++L      + E L +D        +++Q  
Sbjct: 196 WFTEENVEPIDVDYPYLWRNLTEVVGTVLEALGQDPRLAPKPVLERQAD 244


>d2ogqa1 d.223.1.2 (A:371-494) Serine/threonine-protein kinase plk
           C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 124

 Score = 22.9 bits (49), Expect = 6.9
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 2/65 (3%)

Query: 36  YVFAYYLRKNNQSVLFEDNQKDLESATEKLSEYLERD--ITSENLANIKQQVQDKYRLVK 93
           Y   Y L  N+  VLF D+ + +        +Y+ERD   +   +++    +  K  L+K
Sbjct: 51  YGLGYQLCDNSVGVLFNDSTRLILYNDGDSLQYIERDGTESYLTVSSHPNSLMKKITLLK 110

Query: 94  IQLKY 98
               Y
Sbjct: 111 YFRNY 115


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.132    0.363 

Gapped
Lambda     K      H
   0.267   0.0499    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 334,499
Number of extensions: 12830
Number of successful extensions: 78
Number of sequences better than 10.0: 1
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 25
Length of query: 101
Length of database: 2,407,596
Length adjustment: 62
Effective length of query: 39
Effective length of database: 1,556,336
Effective search space: 60697104
Effective search space used: 60697104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.4 bits)