Query psy7602
Match_columns 95
No_of_seqs 109 out of 687
Neff 7.0
Searched_HMMs 29240
Date Fri Aug 16 22:35:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7602.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7602hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wim_A KIAA0161 protein; ring 99.7 2.9E-18 9.9E-23 106.5 1.9 67 4-71 18-93 (94)
2 2ecv_A Tripartite motif-contai 98.2 8.6E-07 2.9E-11 52.3 2.7 44 5-53 31-74 (85)
3 1rmd_A RAG1; V(D)J recombinati 98.1 1.8E-06 6E-11 54.5 3.5 64 5-94 35-99 (116)
4 2ecw_A Tripartite motif-contai 98.0 2.7E-06 9.2E-11 50.1 2.8 43 6-53 32-74 (85)
5 3hct_A TNF receptor-associated 98.0 4.9E-06 1.7E-10 52.7 4.1 64 5-94 30-93 (118)
6 2egp_A Tripartite motif-contai 98.0 7.3E-07 2.5E-11 52.3 -0.0 45 5-53 24-68 (79)
7 3knv_A TNF receptor-associated 98.0 5.7E-07 1.9E-11 59.3 -1.3 68 6-94 44-115 (141)
8 2ct2_A Tripartite motif protei 97.9 3.2E-06 1.1E-10 50.3 1.7 43 6-56 32-74 (88)
9 1jm7_A BRCA1, breast cancer ty 97.9 1.4E-05 4.8E-10 49.6 4.4 41 5-53 33-73 (112)
10 2ecy_A TNF receptor-associated 97.8 8.4E-06 2.9E-10 46.5 2.2 38 6-53 28-65 (66)
11 2xeu_A Ring finger protein 4; 97.8 4.9E-06 1.7E-10 46.6 1.2 38 6-54 23-60 (64)
12 3ng2_A RNF4, snurf, ring finge 97.8 6.2E-06 2.1E-10 47.3 1.6 38 6-54 30-67 (71)
13 3hcs_A TNF receptor-associated 97.8 2E-05 6.7E-10 52.6 4.1 39 5-53 30-68 (170)
14 2ysl_A Tripartite motif-contai 97.8 6.3E-06 2.2E-10 47.6 1.3 41 5-53 32-72 (73)
15 1g25_A CDK-activating kinase a 97.8 1E-05 3.5E-10 45.9 2.0 38 7-54 22-59 (65)
16 2yu4_A E3 SUMO-protein ligase 97.7 2.5E-05 8.6E-10 47.8 3.0 47 4-53 18-66 (94)
17 2jmo_A Parkin; IBR, E3 ligase, 97.6 4.6E-07 1.6E-11 54.7 -5.8 27 57-93 9-35 (80)
18 2djb_A Polycomb group ring fin 97.6 4.5E-05 1.5E-09 44.1 2.7 34 9-53 32-65 (72)
19 1t1h_A Gspef-atpub14, armadill 97.5 3.4E-05 1.2E-09 45.1 1.9 39 5-53 20-58 (78)
20 2ecm_A Ring finger and CHY zin 97.5 3.6E-05 1.2E-09 41.9 1.9 32 6-48 22-53 (55)
21 4ap4_A E3 ubiquitin ligase RNF 97.5 2.2E-05 7.5E-10 49.6 0.9 37 6-53 27-63 (133)
22 3lrq_A E3 ubiquitin-protein li 97.5 5.4E-05 1.8E-09 46.7 2.7 39 6-54 35-74 (100)
23 2d8t_A Dactylidin, ring finger 97.5 1.4E-05 4.9E-10 46.1 -0.1 39 5-54 27-65 (71)
24 2ysj_A Tripartite motif-contai 97.4 7.1E-05 2.4E-09 42.0 1.8 22 5-26 32-53 (63)
25 3fl2_A E3 ubiquitin-protein li 97.3 9E-05 3.1E-09 47.0 2.4 36 5-50 64-99 (124)
26 2csy_A Zinc finger protein 183 97.3 0.00013 4.3E-09 43.0 2.5 34 5-49 27-60 (81)
27 1e4u_A Transcriptional repress 97.3 0.00013 4.6E-09 43.4 2.4 34 10-53 32-65 (78)
28 2ecj_A Tripartite motif-contai 97.3 8.9E-05 3E-09 40.7 1.4 22 5-26 27-48 (58)
29 2ckl_A Polycomb group ring fin 97.3 0.00042 1.4E-08 42.9 4.7 33 7-50 29-62 (108)
30 3htk_C E3 SUMO-protein ligase 97.2 0.0001 3.4E-09 53.6 1.8 39 8-53 197-235 (267)
31 2ect_A Ring finger protein 126 97.2 5.7E-05 1.9E-09 44.1 0.3 37 6-53 31-67 (78)
32 2y43_A E3 ubiquitin-protein li 97.2 0.00015 5.1E-09 44.2 2.3 34 9-53 39-72 (99)
33 2ea6_A Ring finger protein 4; 97.2 0.00019 6.4E-09 40.5 2.1 32 7-49 36-67 (69)
34 1v87_A Deltex protein 2; ring- 97.1 0.00038 1.3E-08 43.3 3.3 37 8-50 58-94 (114)
35 2kiz_A E3 ubiquitin-protein li 97.1 0.00021 7.3E-09 40.6 1.8 36 4-50 28-63 (69)
36 1x4j_A Ring finger protein 38; 97.0 0.00014 4.6E-09 42.3 0.6 34 6-50 39-72 (75)
37 2l0b_A E3 ubiquitin-protein li 97.0 0.00025 8.6E-09 42.8 1.7 34 6-50 56-89 (91)
38 2yur_A Retinoblastoma-binding 97.0 0.00022 7.6E-09 41.4 1.3 34 5-47 27-61 (74)
39 2ep4_A Ring finger protein 24; 97.0 0.00023 7.9E-09 41.0 1.3 33 6-49 31-63 (74)
40 1z6u_A NP95-like ring finger p 97.0 0.00038 1.3E-08 46.0 2.4 37 5-51 90-126 (150)
41 2kr4_A Ubiquitin conjugation f 96.9 0.0011 3.6E-08 39.8 3.8 39 4-53 25-63 (85)
42 3ztg_A E3 ubiquitin-protein li 96.8 0.0005 1.7E-08 41.2 2.0 35 5-48 25-60 (92)
43 1jm7_B BARD1, BRCA1-associated 96.7 0.00017 5.9E-09 45.4 -0.6 34 5-51 34-68 (117)
44 2kre_A Ubiquitin conjugation f 96.7 0.00099 3.4E-08 41.3 2.5 56 4-71 40-95 (100)
45 4ayc_A E3 ubiquitin-protein li 96.7 0.00034 1.2E-08 45.3 0.4 35 5-50 65-99 (138)
46 1chc_A Equine herpes virus-1 r 96.6 0.00053 1.8E-08 38.7 1.0 33 6-49 19-51 (68)
47 4ap4_A E3 ubiquitin ligase RNF 96.5 0.00072 2.4E-08 42.4 1.3 37 7-54 93-129 (133)
48 1iym_A EL5; ring-H2 finger, ub 96.5 0.00045 1.6E-08 37.4 -0.0 32 6-48 21-53 (55)
49 1wgm_A Ubiquitin conjugation f 96.3 0.003 1E-07 38.9 3.1 56 4-71 33-89 (98)
50 1bor_A Transcription factor PM 96.3 0.00034 1.2E-08 38.7 -1.2 31 5-49 18-48 (56)
51 2ecn_A Ring finger protein 141 96.2 0.00058 2E-08 38.8 -0.7 33 7-50 28-60 (70)
52 2c2l_A CHIP, carboxy terminus 96.0 0.0031 1.1E-07 44.0 2.2 57 4-71 219-275 (281)
53 2ecl_A Ring-box protein 2; RNF 95.9 0.0019 6.6E-08 38.1 0.9 32 10-52 47-78 (81)
54 3l11_A E3 ubiquitin-protein li 95.9 0.00066 2.3E-08 42.3 -1.4 36 5-50 27-62 (115)
55 4ic3_A E3 ubiquitin-protein li 95.9 0.0016 5.6E-08 37.8 0.3 32 4-50 35-67 (74)
56 2ct7_A Ring finger protein 31; 95.6 0.0001 3.5E-09 44.7 -5.8 26 57-93 8-33 (86)
57 2ckl_B Ubiquitin ligase protei 95.6 0.0044 1.5E-07 40.9 1.6 31 9-49 71-101 (165)
58 2y1n_A E3 ubiquitin-protein li 95.3 0.006 2.1E-07 46.3 1.8 39 4-52 343-381 (389)
59 2f42_A STIP1 homology and U-bo 95.2 0.014 4.7E-07 39.9 3.0 58 3-71 116-173 (179)
60 2ecg_A Baculoviral IAP repeat- 95.0 0.012 4.1E-07 34.0 2.0 32 4-50 36-68 (75)
61 3dpl_R Ring-box protein 1; ubi 93.2 0.023 7.7E-07 35.5 0.7 32 7-49 69-100 (106)
62 2yho_A E3 ubiquitin-protein li 91.9 0.047 1.6E-06 32.0 0.9 32 4-50 29-61 (79)
63 2ea5_A Cell growth regulator w 91.6 0.051 1.8E-06 31.0 0.8 18 4-21 26-44 (68)
64 2vje_A E3 ubiquitin-protein li 91.3 0.054 1.8E-06 30.4 0.7 29 10-49 27-56 (64)
65 2vje_B MDM4 protein; proto-onc 89.5 0.092 3.2E-06 29.3 0.6 30 9-49 25-55 (63)
66 2cs3_A Protein C14ORF4, MY039 89.4 0.2 6.8E-06 30.4 2.0 30 12-45 38-68 (93)
67 4a0k_B E3 ubiquitin-protein li 89.4 0.068 2.3E-06 34.0 0.0 18 9-26 82-99 (117)
68 2bay_A PRE-mRNA splicing facto 88.4 0.22 7.5E-06 27.8 1.7 23 4-26 14-37 (61)
69 3vk6_A E3 ubiquitin-protein li 87.5 0.2 6.8E-06 31.3 1.2 18 9-26 18-35 (101)
70 3t6p_A Baculoviral IAP repeat- 86.8 0.068 2.3E-06 39.7 -1.4 32 4-50 306-338 (345)
71 2jun_A Midline-1; B-BOX, TRIM, 80.7 0.55 1.9E-05 28.0 1.1 14 9-22 22-35 (101)
72 2d8s_A Cellular modulator of i 79.1 0.93 3.2E-05 26.5 1.7 35 7-50 31-70 (80)
73 3k1l_B Fancl; UBC, ring, RWD, 76.6 0.9 3.1E-05 34.3 1.3 42 8-52 331-375 (381)
74 2o35_A Hypothetical protein DU 75.7 1.4 4.7E-05 27.5 1.8 20 14-33 42-61 (105)
75 3fyb_A Protein of unknown func 73.6 1.3 4.6E-05 27.5 1.3 20 14-33 41-60 (104)
76 2ct0_A Non-SMC element 1 homol 67.2 1.5 5.1E-05 25.5 0.5 31 10-49 33-63 (74)
77 1z60_A TFIIH basal transcripti 43.4 7.2 0.00025 21.7 0.7 12 9-20 34-45 (59)
78 2hu9_A MERP, mercuric transpor 43.2 5.6 0.00019 25.6 0.2 13 81-93 33-45 (130)
79 2d8v_A Zinc finger FYVE domain 41.2 5.8 0.0002 22.8 0.0 16 9-24 23-39 (67)
80 2jx1_A Myelin transcription fa 37.3 15 0.0005 17.9 1.2 10 86-95 4-13 (31)
81 3oj3_I Tumor necrosis factor a 36.0 18 0.00062 19.4 1.5 14 13-26 35-48 (49)
82 1vfy_A Phosphatidylinositol-3- 28.4 9.7 0.00033 21.6 -0.4 14 10-23 32-45 (73)
83 2yre_A F-box only protein 30; 28.2 6.8 0.00023 24.2 -1.2 45 9-55 10-55 (100)
84 1joc_A EEA1, early endosomal a 26.3 11 0.00039 23.6 -0.4 14 10-23 90-103 (125)
85 2yw8_A RUN and FYVE domain-con 25.1 10 0.00035 21.9 -0.8 13 10-22 40-52 (82)
86 2fc6_A Nuclear, target of EGR1 25.1 15 0.00053 19.8 0.0 13 82-94 28-41 (50)
87 1z2q_A LM5-1; membrane protein 24.8 11 0.00039 21.9 -0.6 14 10-23 42-55 (84)
88 3t7l_A Zinc finger FYVE domain 24.3 13 0.00044 22.0 -0.4 15 10-24 41-55 (90)
89 1x4u_A Zinc finger, FYVE domai 23.0 12 0.00041 21.7 -0.8 13 10-22 35-47 (84)
90 1y02_A CARP2, FYVE-ring finger 21.6 16 0.00054 23.0 -0.4 14 10-23 40-53 (120)
91 1wfk_A Zinc finger, FYVE domai 21.5 13 0.00044 22.0 -0.8 13 10-22 30-42 (88)
92 1pxe_A Neural zinc finger tran 20.5 39 0.0013 19.0 1.1 12 84-95 18-29 (63)
No 1
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.70 E-value=2.9e-18 Score=106.52 Aligned_cols=67 Identities=22% Similarity=0.472 Sum_probs=57.9
Q ss_pred CCcccC-CCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcc--cccchhhhH------HHHHHHHHHHHHhhC
Q psy7602 4 TLMTGL-ECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNIL--VDDGKPIEF------DVYQGILSNQVTNCR 71 (95)
Q Consensus 4 ~~~~~l-~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~--i~~~~i~~l------~ky~~~l~~~~v~~~ 71 (95)
.+++.+ .|||.||++||++|++.+|. +|...+|+||+++|+.. ++++.++.+ ++|+++++++||+++
T Consensus 18 ~~~~~l~~CgH~FC~~Cl~~~~~~~i~-~g~~~~i~CP~~~C~~~~~~~~~~i~~ll~~~~~~ky~~~~~~~~v~~~ 93 (94)
T 1wim_A 18 EQMTTIAQCQCIFCTLCLKQYVELLIK-EGLETAISCPDAACPKQGHLQENEIECMVAAEIMQRYKKLQFERSGPSS 93 (94)
T ss_dssp GGEEEETTTTEEEEHHHHHHHHHHHHH-HCSCCCEECSCTTCSSCCEECHHHHHHHSCHHHHHHHHHHHHHSSCSSC
T ss_pred ccceEcCCCCCcccHHHHHHHHHHHhh-cCCcccccCccccCCCCCccCHHHHHHHCCHHHHHHHHHHHHHhhhccC
Confidence 345554 69999999999999999997 67656899999999999 999999887 899999999988764
No 2
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.18 E-value=8.6e-07 Score=52.33 Aligned_cols=44 Identities=20% Similarity=0.530 Sum_probs=34.5
Q ss_pred CcccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccchh
Q psy7602 5 LMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKP 53 (95)
Q Consensus 5 ~~~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~~i 53 (95)
+...+.|||.||.+|+..|+..+.. .+. ...||. |+..+..+.+
T Consensus 31 ~p~~~~CgH~fC~~Ci~~~~~~~~~-~~~--~~~CP~--Cr~~~~~~~~ 74 (85)
T 2ecv_A 31 QPLSLDCGHSFCQACLTANHKKSML-DKG--ESSCPV--CRISYQPENI 74 (85)
T ss_dssp SCBCCSSSCCBCTTHHHHHHHHHHH-TTS--CCCCTT--TCCSSCSSSC
T ss_pred CceeCCCCCHHHHHHHHHHHHHhhc-CCC--CCcCCC--CCCccCHHhc
Confidence 3456799999999999999999876 333 589996 9887776543
No 3
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.13 E-value=1.8e-06 Score=54.48 Aligned_cols=64 Identities=17% Similarity=0.231 Sum_probs=43.5
Q ss_pred CcccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccchhhhH-HHHHHHHHHHHHhhCCCCCCCCCCCCe
Q psy7602 5 LMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKPIEF-DVYQGILSNQVTNCRLASLVPCKCSWV 83 (95)
Q Consensus 5 ~~~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~~i~~l-~ky~~~l~~~~v~~~~~~~~~~~~~~~ 83 (95)
+...+.|||.||..|+.+++... ...||. |+..+..+.+... .... +.++.- .
T Consensus 35 ~p~~~~CgH~fC~~Ci~~~~~~~--------~~~CP~--Cr~~~~~~~~~~~~~~l~-----~~i~~l-----------~ 88 (116)
T 1rmd_A 35 DPVETSCKHLFCRICILRCLKVM--------GSYCPS--CRYPCFPTDLESPVKSFL-----NILNSL-----------M 88 (116)
T ss_dssp SEEECTTSCEEEHHHHHHHHHHT--------CSBCTT--TCCBCCGGGCBCCCHHHH-----HHHHHC-----------E
T ss_pred CcEEcCCCCcccHHHHHHHHhHC--------cCcCCC--CCCCCCHhhccccHHHHH-----HHHHHh-----------c
Confidence 34557999999999999999752 236885 9988887665443 2222 223333 3
Q ss_pred eeCCCCCCccC
Q psy7602 84 RFPPGADFILN 94 (95)
Q Consensus 84 ~~CP~~~C~~~ 94 (95)
.+||+.||+..
T Consensus 89 v~C~~~gC~~~ 99 (116)
T 1rmd_A 89 VKCPAQDCNEE 99 (116)
T ss_dssp EECCSTTCCCE
T ss_pred CCCCCCCCcch
Confidence 35999899754
No 4
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.04 E-value=2.7e-06 Score=50.14 Aligned_cols=43 Identities=19% Similarity=0.411 Sum_probs=33.0
Q ss_pred cccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccchh
Q psy7602 6 MTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKP 53 (95)
Q Consensus 6 ~~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~~i 53 (95)
...+.|||.||..|+..|+..... .+. ...||. |+..+..+.+
T Consensus 32 p~~~~CgH~fC~~Ci~~~~~~~~~-~~~--~~~CP~--Cr~~~~~~~~ 74 (85)
T 2ecw_A 32 PVSADCNHSFCRACITLNYESNRN-TDG--KGNCPV--CRVPYPFGNL 74 (85)
T ss_dssp CEECTTSCCBCHHHHHHHHHHSBC-TTS--CBCCTT--TCCCCCTTCC
T ss_pred ceeCCCCCHHHHHHHHHHHHhccC-CCC--CCCCCC--CCCcCCHHhC
Confidence 345789999999999999998764 333 589985 8887776543
No 5
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.02 E-value=4.9e-06 Score=52.73 Aligned_cols=64 Identities=14% Similarity=0.245 Sum_probs=42.4
Q ss_pred CcccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccchhhhHHHHHHHHHHHHHhhCCCCCCCCCCCCee
Q psy7602 5 LMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKPIEFDVYQGILSNQVTNCRLASLVPCKCSWVR 84 (95)
Q Consensus 5 ~~~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~~i~~l~ky~~~l~~~~v~~~~~~~~~~~~~~~~ 84 (95)
+.+.+.|||.||.+|+..++..+- ..||. |+..+..+.+..-.. +++.|+.- ..
T Consensus 30 ~p~~~~CgH~fC~~Ci~~~~~~~~--------~~CP~--Cr~~~~~~~~~~~~~-----l~~~i~~l-----------~v 83 (118)
T 3hct_A 30 EAVQTPCGHRFCKACIIKSIRDAG--------HKCPV--DNEILLENQLFPDNF-----AKREILSL-----------MV 83 (118)
T ss_dssp SEEECTTSCEEEHHHHHHHHHHHC--------SBCTT--TCCBCCGGGCEECHH-----HHHHHHTS-----------EE
T ss_pred CeEECCcCChhhHHHHHHHHhhCC--------CCCCC--CCCCcCHHhcccCHH-----HHHHHccc-----------ee
Confidence 345679999999999999987531 27885 888777655432222 33344433 34
Q ss_pred eCCCCCCccC
Q psy7602 85 FPPGADFILN 94 (95)
Q Consensus 85 ~CP~~~C~~~ 94 (95)
.||+.+|+..
T Consensus 84 ~C~n~gC~~~ 93 (118)
T 3hct_A 84 KCPNEGCLHK 93 (118)
T ss_dssp ECSSTTCCCE
T ss_pred ECCCCCCCCE
Confidence 5888888764
No 6
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.01 E-value=7.3e-07 Score=52.32 Aligned_cols=45 Identities=18% Similarity=0.339 Sum_probs=34.0
Q ss_pred CcccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccchh
Q psy7602 5 LMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKP 53 (95)
Q Consensus 5 ~~~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~~i 53 (95)
+...++|||.||.+|+..|+..... ++. ....||. |+..+..+.+
T Consensus 24 ~p~~l~CgH~fC~~Ci~~~~~~~~~-~~~-~~~~CP~--Cr~~~~~~~l 68 (79)
T 2egp_A 24 EPLSLDCGHSLCRACITVSNKEAVT-SMG-GKSSCPV--CGISYSFEHL 68 (79)
T ss_dssp SCCCCSSSCCCCHHHHSCCCCCCSS-SCC-CCCCCSS--SCCCCCSSGG
T ss_pred CeeECCCCCHHHHHHHHHHHHhccc-CCC-CCCcCCC--CCCcCCHhhC
Confidence 3445799999999999999988664 232 3689996 9887776544
No 7
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=97.96 E-value=5.7e-07 Score=59.33 Aligned_cols=68 Identities=19% Similarity=0.357 Sum_probs=40.4
Q ss_pred cccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccchhhhH----HHHHHHHHHHHHhhCCCCCCCCCCC
Q psy7602 6 MTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKPIEF----DVYQGILSNQVTNCRLASLVPCKCS 81 (95)
Q Consensus 6 ~~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~~i~~l----~ky~~~l~~~~v~~~~~~~~~~~~~ 81 (95)
-+.+.|||.||..|+..++.. + ...||. |+..+..+....+ +.|....+++.|.+-
T Consensus 44 pv~~~CgH~FC~~Ci~~~~~~-----~---~~~CP~--Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~~L---------- 103 (141)
T 3knv_A 44 PFQAQCGHRYCSFCLASILSS-----G---PQNCAA--CVHEGIYEEGISILESSSAFPDNAARREVESL---------- 103 (141)
T ss_dssp EEECTTSCEEEHHHHHHHGGG-----S---CEECHH--HHHTTCCCTTTTEECGGGCEECHHHHHHHHTS----------
T ss_pred cEECCCCCccCHHHHHHHHhc-----C---CCCCCC--CCCcccccccccccchhhhcccHHHHHHHccc----------
Confidence 355799999999999999842 2 257885 7765433221111 122222233445433
Q ss_pred CeeeCCCCCCccC
Q psy7602 82 WVRFPPGADFILN 94 (95)
Q Consensus 82 ~~~~CP~~~C~~~ 94 (95)
..+||+.+|+..
T Consensus 104 -~v~Cpn~GC~~~ 115 (141)
T 3knv_A 104 -PAVCPSDGCTWK 115 (141)
T ss_dssp -EEECCSTTCCCE
T ss_pred -ccccCCCCCCCE
Confidence 345999999764
No 8
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.92 E-value=3.2e-06 Score=50.35 Aligned_cols=43 Identities=23% Similarity=0.543 Sum_probs=33.6
Q ss_pred cccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccchhhhH
Q psy7602 6 MTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKPIEF 56 (95)
Q Consensus 6 ~~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~~i~~l 56 (95)
...+.|||.||.+|+.+|+..+. ..++||. |+..+....+..|
T Consensus 32 ~~~~~CgH~fC~~Ci~~~~~~~~------~~~~CP~--Cr~~~~~~~i~~l 74 (88)
T 2ct2_A 32 PKLLHCGHTICRQCLEKLLASSI------NGVRCPF--CSKITRITSLTQL 74 (88)
T ss_dssp EEECSSSCEEEHHHHHHHHHHCS------SCBCCTT--TCCCBCCSSTTTS
T ss_pred eEECCCCChhhHHHHHHHHHcCC------CCcCCCC--CCCcccchhHHHH
Confidence 45679999999999999997641 1478996 9988877766554
No 9
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.90 E-value=1.4e-05 Score=49.57 Aligned_cols=41 Identities=24% Similarity=0.545 Sum_probs=30.9
Q ss_pred CcccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccchh
Q psy7602 5 LMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKP 53 (95)
Q Consensus 5 ~~~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~~i 53 (95)
+...++|||.||..|+..++..+ .+ ...||. |+..+....+
T Consensus 33 ~p~~~~CgH~fC~~Ci~~~~~~~---~~---~~~CP~--Cr~~~~~~~~ 73 (112)
T 1jm7_A 33 EPVSTKCDHIFCKFCMLKLLNQK---KG---PSQCPL--CKNDITKRSL 73 (112)
T ss_dssp SCCBCTTSCCCCSHHHHHHHHSS---SS---SCCCTT--TSCCCCTTTC
T ss_pred CeEECCCCCHHHHHHHHHHHHhC---CC---CCCCcC--CCCcCCHhhc
Confidence 34557999999999999998753 12 378996 8887776554
No 10
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.82 E-value=8.4e-06 Score=46.45 Aligned_cols=38 Identities=32% Similarity=0.683 Sum_probs=29.0
Q ss_pred cccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccchh
Q psy7602 6 MTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKP 53 (95)
Q Consensus 6 ~~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~~i 53 (95)
...+.|||.||.+|+..++. . + ...||. |+..+..+.+
T Consensus 28 p~~~~CgH~fC~~Ci~~~~~---~--~---~~~CP~--Cr~~~~~~~i 65 (66)
T 2ecy_A 28 PKQTECGHRFCESCMAALLS---S--S---SPKCTA--CQESIVKDKV 65 (66)
T ss_dssp CCCCSSSCCCCHHHHHHHHT---T--S---SCCCTT--TCCCCCTTTC
T ss_pred eeECCCCCHHHHHHHHHHHH---h--C---cCCCCC--CCcCCChhhc
Confidence 34479999999999999986 1 1 357986 8888776654
No 11
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=97.82 E-value=4.9e-06 Score=46.63 Aligned_cols=38 Identities=26% Similarity=0.686 Sum_probs=29.5
Q ss_pred cccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccchhh
Q psy7602 6 MTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKPI 54 (95)
Q Consensus 6 ~~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~~i~ 54 (95)
...+.|||.||.+|+.+|++. ...||. |+..+..+++.
T Consensus 23 ~~~~~CgH~fc~~Ci~~~~~~---------~~~CP~--Cr~~~~~~~~~ 60 (64)
T 2xeu_A 23 IVSTECGHVFCSQCLRDSLKN---------ANTCPT--CRKKINHKRYH 60 (64)
T ss_dssp EEEETTSCEEEHHHHHHHHHH---------CSBCTT--TCCBCTTTCEE
T ss_pred EEeCCCCCchhHHHHHHHHHc---------CCCCCC--CCccCCcccee
Confidence 356799999999999999864 137885 88888776553
No 12
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=97.81 E-value=6.2e-06 Score=47.29 Aligned_cols=38 Identities=26% Similarity=0.677 Sum_probs=29.7
Q ss_pred cccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccchhh
Q psy7602 6 MTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKPI 54 (95)
Q Consensus 6 ~~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~~i~ 54 (95)
...+.|||.||.+|+.+|++.+ .+||. |+..+..+.+.
T Consensus 30 ~~~~~CgH~fc~~Ci~~~~~~~---------~~CP~--Cr~~~~~~~~~ 67 (71)
T 3ng2_A 30 IVSTECGHVFCSQCLRDSLKNA---------NTCPT--CRKKINHKRYH 67 (71)
T ss_dssp EEECTTSCEEEHHHHHHHHHHC---------SBCTT--TCCBCCCCSCC
T ss_pred eEeCCCCChHhHHHHHHHHHcC---------CCCCC--CCCccChhhee
Confidence 3668999999999999998632 37885 88888776654
No 13
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=97.80 E-value=2e-05 Score=52.63 Aligned_cols=39 Identities=21% Similarity=0.432 Sum_probs=27.5
Q ss_pred CcccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccchh
Q psy7602 5 LMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKP 53 (95)
Q Consensus 5 ~~~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~~i 53 (95)
+-+.++|||.||..|+.+++..+. .+||. |+..+..+.+
T Consensus 30 ~pv~~~CgH~fC~~Ci~~~~~~~~--------~~CP~--Cr~~~~~~~~ 68 (170)
T 3hcs_A 30 EAVQTPCGHRFCKACIIKSIRDAG--------HKCPV--DNEILLENQL 68 (170)
T ss_dssp SEEECTTSCEEEHHHHHHHHHHHC--------SBCTT--TCCBCCGGGC
T ss_pred CcEECCCCCHHHHHHHHHHHHhCC--------CCCCC--CccCcchhhh
Confidence 335579999999999999987532 16764 6666665443
No 14
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.78 E-value=6.3e-06 Score=47.57 Aligned_cols=41 Identities=22% Similarity=0.503 Sum_probs=30.8
Q ss_pred CcccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccchh
Q psy7602 5 LMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKP 53 (95)
Q Consensus 5 ~~~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~~i 53 (95)
+...+.|||.||.+|+..+++. .+ ....||. |+..+..+.+
T Consensus 32 ~~~~~~CgH~fC~~Ci~~~~~~----~~--~~~~CP~--Cr~~~~~~~~ 72 (73)
T 2ysl_A 32 KPVTIDCGHNFCLKCITQIGET----SC--GFFKCPL--CKTSVRKNAI 72 (73)
T ss_dssp SEEECTTCCEEEHHHHHHHCSS----SC--SCCCCSS--SCCCCCCCCC
T ss_pred CeEEcCCCChhhHHHHHHHHHc----CC--CCCCCCC--CCCcCCcccC
Confidence 3455799999999999999862 12 2578986 9888876654
No 15
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.77 E-value=1e-05 Score=45.95 Aligned_cols=38 Identities=18% Similarity=0.417 Sum_probs=28.9
Q ss_pred ccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccchhh
Q psy7602 7 TGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKPI 54 (95)
Q Consensus 7 ~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~~i~ 54 (95)
..++|||.||.+|+.+++.. + ..+||. |+..+..+.+.
T Consensus 22 ~~~~CgH~fC~~Ci~~~~~~-----~---~~~CP~--Cr~~~~~~~~~ 59 (65)
T 1g25_A 22 MVNVCGHTLCESCVDLLFVR-----G---AGNCPE--CGTPLRKSNFR 59 (65)
T ss_dssp EECTTCCCEEHHHHHHHHHT-----T---SSSCTT--TCCCCSSCCCE
T ss_pred ecCCCCCHhHHHHHHHHHHc-----C---CCcCCC--CCCccccccce
Confidence 45799999999999999752 2 357885 98888766553
No 16
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.69 E-value=2.5e-05 Score=47.84 Aligned_cols=47 Identities=11% Similarity=0.262 Sum_probs=34.5
Q ss_pred CCcccC-CCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcc-cccchh
Q psy7602 4 TLMTGL-ECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNIL-VDDGKP 53 (95)
Q Consensus 4 ~~~~~l-~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~-i~~~~i 53 (95)
.+-+.+ .|||.||+.|+.+|+...-. .+ ...+||..+|... +..+.+
T Consensus 18 ~dPV~~~~cGh~f~r~cI~~~l~~~~~-~~--~~~~CP~tgc~~~~l~~~~L 66 (94)
T 2yu4_A 18 KKPVKNKVCGHTYEEDAIVRMIESRQK-RK--KKAYCPQIGCSHTDIRKSDL 66 (94)
T ss_dssp SSEEEESSSCCEEEHHHHHHHHHHHHT-TT--CCBCCCSTTCCCCCBCGGGE
T ss_pred cCCEEcCCCCCeecHHHHHHHHHHccC-cC--CCCCCCcCcCcccccCHhhC
Confidence 444566 49999999999999987532 12 2578999999866 665544
No 17
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=97.59 E-value=4.6e-07 Score=54.74 Aligned_cols=27 Identities=11% Similarity=-0.105 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHhhCCCCCCCCCCCCeeeCCCCCCcc
Q psy7602 57 DVYQGILSNQVTNCRLASLVPCKCSWVRFPPGADFIL 93 (95)
Q Consensus 57 ~ky~~~l~~~~v~~~~~~~~~~~~~~~~~CP~~~C~~ 93 (95)
+||+++++++||+++ .++|||+|||+.
T Consensus 9 ~rY~~~~~e~~v~~~----------~~~~CP~p~C~~ 35 (80)
T 2jmo_A 9 NRYQQYGAEECVLQM----------GGVLCPRPGCGA 35 (80)
T ss_dssp CSCCCSSSCCSSCCC----------SSCCCCSSSCCC
T ss_pred HHHHHHHHHHHhhhC----------CcEECCCCCCCc
Confidence 688999999999887 599999999986
No 18
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.55 E-value=4.5e-05 Score=44.09 Aligned_cols=34 Identities=35% Similarity=0.840 Sum_probs=26.6
Q ss_pred CCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccchh
Q psy7602 9 LECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKP 53 (95)
Q Consensus 9 l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~~i 53 (95)
+.|||.||..|+.+++.. ...||. |+..+..+.+
T Consensus 32 ~~CgH~fC~~Ci~~~~~~---------~~~CP~--Cr~~~~~~~~ 65 (72)
T 2djb_A 32 TECLHTFCKSCIVRHFYY---------SNRCPK--CNIVVHQTQP 65 (72)
T ss_dssp SSSCCEECHHHHHHHHHH---------CSSCTT--TCCCCCSSCS
T ss_pred CCCCCHHHHHHHHHHHHc---------CCcCCC--cCcccCcccc
Confidence 499999999999999954 246885 8887776544
No 19
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=97.53 E-value=3.4e-05 Score=45.09 Aligned_cols=39 Identities=8% Similarity=0.072 Sum_probs=29.2
Q ss_pred CcccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccchh
Q psy7602 5 LMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKP 53 (95)
Q Consensus 5 ~~~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~~i 53 (95)
+-+.++|||.||+.|+.+|+.. | ..+||. |+..+..+.+
T Consensus 20 ~Pv~~~CgH~fc~~Ci~~~~~~-----~---~~~CP~--C~~~~~~~~l 58 (78)
T 1t1h_A 20 DPVIVSTGQTYERSSIQKWLDA-----G---HKTCPK--SQETLLHAGL 58 (78)
T ss_dssp SEEEETTTEEEEHHHHHHHHTT-----T---CCBCTT--TCCBCSSCCC
T ss_pred CCEEcCCCCeecHHHHHHHHHH-----C---cCCCCC--CcCCCChhhC
Confidence 4455799999999999999962 2 357886 8877765543
No 20
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=97.52 E-value=3.6e-05 Score=41.92 Aligned_cols=32 Identities=25% Similarity=0.503 Sum_probs=24.8
Q ss_pred cccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCccc
Q psy7602 6 MTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILV 48 (95)
Q Consensus 6 ~~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i 48 (95)
...+.|||.||.+|+.+|++.. ..||. |+..+
T Consensus 22 ~~~~~CgH~fc~~Ci~~~~~~~---------~~CP~--Cr~~~ 53 (55)
T 2ecm_A 22 AHVLPCGHLLHRTCYEEMLKEG---------YRCPL--CSGPS 53 (55)
T ss_dssp EEECTTSCEEETTHHHHHHHHT---------CCCTT--SCCSS
T ss_pred eEecCCCCcccHHHHHHHHHcC---------CcCCC--CCCcC
Confidence 5568999999999999998763 45774 66554
No 21
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.50 E-value=2.2e-05 Score=49.57 Aligned_cols=37 Identities=27% Similarity=0.715 Sum_probs=28.1
Q ss_pred cccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccchh
Q psy7602 6 MTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKP 53 (95)
Q Consensus 6 ~~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~~i 53 (95)
...+.|||.||.+|+.+|++.+ ..||. |+..++...+
T Consensus 27 ~~~~~CgH~fc~~Ci~~~~~~~---------~~CP~--Cr~~~~~~~l 63 (133)
T 4ap4_A 27 IVSTECGHVFCSQCLRDSLKNA---------NTCPT--CRKKINHKRY 63 (133)
T ss_dssp EEEETTCCEEEHHHHHHHHTTC---------SBCTT--TCCBCTTTCE
T ss_pred eEecCCCChhhHHHHHHHHHhC---------CCCCC--CCCcCccccc
Confidence 3678999999999999998642 26775 7777665554
No 22
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=97.50 E-value=5.4e-05 Score=46.66 Aligned_cols=39 Identities=21% Similarity=0.436 Sum_probs=30.0
Q ss_pred ccc-CCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccchhh
Q psy7602 6 MTG-LECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKPI 54 (95)
Q Consensus 6 ~~~-l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~~i~ 54 (95)
... +.|||.||..|+..|+..+ + ..||. |+..+..+.+.
T Consensus 35 p~~~~~CgH~FC~~Ci~~~~~~~----~----~~CP~--Cr~~~~~~~l~ 74 (100)
T 3lrq_A 35 ARLCPHCSKLCCFSCIRRWLTEQ----R----AQCPH--CRAPLQLRELV 74 (100)
T ss_dssp EEECTTTCCEEEHHHHHHHHHHT----C----SBCTT--TCCBCCGGGCE
T ss_pred ccccCCCCChhhHHHHHHHHHHC----c----CCCCC--CCCcCCHHHhH
Confidence 345 8999999999999998753 1 57885 88887766554
No 23
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.49 E-value=1.4e-05 Score=46.14 Aligned_cols=39 Identities=23% Similarity=0.328 Sum_probs=29.1
Q ss_pred CcccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccchhh
Q psy7602 5 LMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKPI 54 (95)
Q Consensus 5 ~~~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~~i~ 54 (95)
+...+.|||.||.+|+..++... ..||. |+..+..+.+.
T Consensus 27 ~~~~~~CgH~fC~~Ci~~~~~~~---------~~CP~--Cr~~~~~~~~~ 65 (71)
T 2d8t_A 27 HPVSLPCKHVFCYLCVKGASWLG---------KRCAL--CRQEIPEDFLD 65 (71)
T ss_dssp SEEEETTTEEEEHHHHHHCTTCS---------SBCSS--SCCBCCHHHHS
T ss_pred CCEEccCCCHHHHHHHHHHHHCC---------CcCcC--cCchhCHhhcc
Confidence 34567899999999999887431 47885 88888766543
No 24
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.37 E-value=7.1e-05 Score=42.02 Aligned_cols=22 Identities=27% Similarity=0.682 Sum_probs=18.8
Q ss_pred CcccCCCCchhhHHHHHHHHHh
Q psy7602 5 LMTGLECSHRFCTQCWCEYLTT 26 (95)
Q Consensus 5 ~~~~l~CgH~FC~~C~~~yl~~ 26 (95)
+...+.|||.||.+|+.++++.
T Consensus 32 ~p~~~~CgH~fC~~Ci~~~~~~ 53 (63)
T 2ysj_A 32 KPVTIDCGHNFCLKCITQIGET 53 (63)
T ss_dssp SCEECTTSSEECHHHHHHHHHH
T ss_pred CeEEeCCCCcchHHHHHHHHHc
Confidence 3455799999999999999985
No 25
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=97.35 E-value=9e-05 Score=47.05 Aligned_cols=36 Identities=19% Similarity=0.497 Sum_probs=27.9
Q ss_pred CcccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCccccc
Q psy7602 5 LMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDD 50 (95)
Q Consensus 5 ~~~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~ 50 (95)
+.+.++|||.||..|+..++.. . ...||. |+..+..
T Consensus 64 ~p~~~~CgH~fC~~Ci~~~~~~------~--~~~CP~--Cr~~~~~ 99 (124)
T 3fl2_A 64 RPITTVCQHNVCKDCLDRSFRA------Q--VFSCPA--CRYDLGR 99 (124)
T ss_dssp SEEECTTSCEEEHHHHHHHHHT------T--CCBCTT--TCCBCCT
T ss_pred CcEEeeCCCcccHHHHHHHHhH------C--cCCCCC--CCccCCC
Confidence 3456799999999999999871 1 357986 8887765
No 26
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.31 E-value=0.00013 Score=43.01 Aligned_cols=34 Identities=26% Similarity=0.519 Sum_probs=26.2
Q ss_pred CcccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccc
Q psy7602 5 LMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVD 49 (95)
Q Consensus 5 ~~~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~ 49 (95)
+.+.+.|||.||..|+..+++. ...||. |+..+.
T Consensus 27 ~p~~~~CgH~fC~~Ci~~~~~~---------~~~CP~--Cr~~~~ 60 (81)
T 2csy_A 27 NPVVTKCRHYFCESCALEHFRA---------TPRCYI--CDQPTG 60 (81)
T ss_dssp SEEECTTSCEEEHHHHHHHHHH---------CSBCSS--SCCBCC
T ss_pred CeeEccCCCHhHHHHHHHHHHC---------CCcCCC--cCcccc
Confidence 3445899999999999999863 236875 887765
No 27
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=97.27 E-value=0.00013 Score=43.44 Aligned_cols=34 Identities=24% Similarity=0.603 Sum_probs=25.2
Q ss_pred CCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccchh
Q psy7602 10 ECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKP 53 (95)
Q Consensus 10 ~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~~i 53 (95)
.|||.||..||.++... + ...||. |+..+....+
T Consensus 32 ~CGH~fC~~Cl~~~~~~-----~---~~~CP~--CR~~~~~~~~ 65 (78)
T 1e4u_A 32 TCGYQICRFCWHRIRTD-----E---NGLCPA--CRKPYPEDPA 65 (78)
T ss_dssp TTSCCCCHHHHHHHTTS-----S---CSBCTT--TCCBCSSCSS
T ss_pred CCCCCcCHHHHHHHHhc-----C---CCCCCC--CCCccCCCch
Confidence 49999999999987532 2 367986 8887766543
No 28
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.26 E-value=8.9e-05 Score=40.66 Aligned_cols=22 Identities=27% Similarity=0.700 Sum_probs=18.3
Q ss_pred CcccCCCCchhhHHHHHHHHHh
Q psy7602 5 LMTGLECSHRFCTQCWCEYLTT 26 (95)
Q Consensus 5 ~~~~l~CgH~FC~~C~~~yl~~ 26 (95)
+...++|||.||.+|+.+|+..
T Consensus 27 ~p~~~~CgH~fC~~Ci~~~~~~ 48 (58)
T 2ecj_A 27 EPVIIECGHNFCKACITRWWED 48 (58)
T ss_dssp SCCCCSSCCCCCHHHHHHHTTS
T ss_pred ccEeCCCCCccCHHHHHHHHHh
Confidence 3455899999999999999764
No 29
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=97.26 E-value=0.00042 Score=42.88 Aligned_cols=33 Identities=39% Similarity=0.931 Sum_probs=25.5
Q ss_pred ccC-CCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCccccc
Q psy7602 7 TGL-ECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDD 50 (95)
Q Consensus 7 ~~l-~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~ 50 (95)
+.+ .|||.||..|+.+++... ..||. |+..+..
T Consensus 29 ~~~~~CgH~fC~~Ci~~~~~~~---------~~CP~--Cr~~~~~ 62 (108)
T 2ckl_A 29 TTIIECLHSFCKTCIVRYLETS---------KYCPI--CDVQVHK 62 (108)
T ss_dssp EEETTTCCEEEHHHHHHHHTSC---------SBCTT--TCCBSCS
T ss_pred CEeCCCCChhhHHHHHHHHHhC---------CcCcC--CCccccc
Confidence 444 999999999999998642 56886 8876654
No 30
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.23 E-value=0.0001 Score=53.58 Aligned_cols=39 Identities=23% Similarity=0.359 Sum_probs=31.4
Q ss_pred cCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccchh
Q psy7602 8 GLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKP 53 (95)
Q Consensus 8 ~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~~i 53 (95)
...|||.||+.|+.+|+.. .| ...||..||+..+..+.+
T Consensus 197 s~~CGHsFcR~cI~~~~~~----~~---~~~CPvtGCr~~l~~~dL 235 (267)
T 3htk_C 197 SRKCNHVFDRDGIQNYLQG----YT---TRDCPQAACSQVVSMRDF 235 (267)
T ss_dssp ESSSCCEEEHHHHHHHSTT----CS---CEECSGGGCSCEECGGGE
T ss_pred eCCCCCcccHHHHHHHHHh----CC---CCCCCcccccCcCchhhC
Confidence 3589999999999999863 23 378999999987776654
No 31
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.23 E-value=5.7e-05 Score=44.11 Aligned_cols=37 Identities=22% Similarity=0.563 Sum_probs=27.7
Q ss_pred cccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccchh
Q psy7602 6 MTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKP 53 (95)
Q Consensus 6 ~~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~~i 53 (95)
...+.|||.||.+|+.+|++.+ ..||. |+..+....+
T Consensus 31 ~~~~~C~H~fc~~Ci~~~~~~~---------~~CP~--Cr~~~~~~~~ 67 (78)
T 2ect_A 31 VRQLPCNHLFHDSCIVPWLEQH---------DSCPV--CRKSLTGQNT 67 (78)
T ss_dssp EEECTTSCEEETTTTHHHHTTT---------CSCTT--TCCCCCCSCS
T ss_pred EEEeCCCCeecHHHHHHHHHcC---------CcCcC--cCCccCCccc
Confidence 3457999999999999998531 36885 8877766543
No 32
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=97.22 E-value=0.00015 Score=44.22 Aligned_cols=34 Identities=26% Similarity=0.776 Sum_probs=26.2
Q ss_pred CCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccchh
Q psy7602 9 LECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKP 53 (95)
Q Consensus 9 l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~~i 53 (95)
+.|||.||..|+.+|+.. ...||. |+..+....+
T Consensus 39 ~~CgH~fC~~Ci~~~~~~---------~~~CP~--Cr~~~~~~~l 72 (99)
T 2y43_A 39 PQCSHNYCSLCIRKFLSY---------KTQCPT--CCVTVTEPDL 72 (99)
T ss_dssp TTTCCEEEHHHHHHHHTT---------CCBCTT--TCCBCCGGGC
T ss_pred CCCCCHhhHHHHHHHHHC---------CCCCCC--CCCcCChhhC
Confidence 389999999999999863 147885 8887775443
No 33
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.16 E-value=0.00019 Score=40.52 Aligned_cols=32 Identities=31% Similarity=0.823 Sum_probs=24.9
Q ss_pred ccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccc
Q psy7602 7 TGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVD 49 (95)
Q Consensus 7 ~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~ 49 (95)
..+.|||.||.+|+..|+.. ...||. |+..++
T Consensus 36 ~~~~CgH~fc~~Ci~~~~~~---------~~~CP~--Cr~~~~ 67 (69)
T 2ea6_A 36 VSTECGHVFCSQCLRDSLKN---------ANTCPT--CRKKIN 67 (69)
T ss_dssp EECSSSCEEEHHHHHHHHHH---------CSSCTT--TCCCCC
T ss_pred EeCCCCChhcHHHHHHHHHc---------CCCCCC--CCCccC
Confidence 56899999999999999864 136775 776654
No 34
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=97.10 E-value=0.00038 Score=43.27 Aligned_cols=37 Identities=19% Similarity=0.449 Sum_probs=27.5
Q ss_pred cCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCccccc
Q psy7602 8 GLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDD 50 (95)
Q Consensus 8 ~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~ 50 (95)
.+.|||.||.+|+..|+..... . ....||. |+..+..
T Consensus 58 ~~~C~H~Fh~~Ci~~wl~~~~~---~-~~~~CP~--CR~~~~~ 94 (114)
T 1v87_A 58 LTKCSHAFHLLCLLAMYCNGNK---D-GSLQCPS--CKTIYGE 94 (114)
T ss_dssp ESSSCCEECHHHHHHHHHHTCC---S-SCCBCTT--TCCBSSS
T ss_pred cCCCCCcccHHHHHHHHHcccC---C-CCCcCCC--CCCccCC
Confidence 5789999999999999955332 1 2468986 8876543
No 35
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=97.08 E-value=0.00021 Score=40.63 Aligned_cols=36 Identities=25% Similarity=0.565 Sum_probs=26.8
Q ss_pred CCcccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCccccc
Q psy7602 4 TLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDD 50 (95)
Q Consensus 4 ~~~~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~ 50 (95)
+....++|||.||..|+.+|+..+ .+||. |+..+..
T Consensus 28 ~~~~~~~C~H~fc~~Ci~~~~~~~---------~~CP~--Cr~~~~~ 63 (69)
T 2kiz_A 28 EDVRRLPCMHLFHQVCVDQWLITN---------KKCPI--CRVDIEA 63 (69)
T ss_dssp SCEEECTTSCEEEHHHHHHHHHHC---------SBCTT--TCSBSCS
T ss_pred CcEEEeCCCCHHHHHHHHHHHHcC---------CCCcC--cCccccC
Confidence 345568999999999999998651 14875 8776554
No 36
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.02 E-value=0.00014 Score=42.26 Aligned_cols=34 Identities=24% Similarity=0.594 Sum_probs=25.9
Q ss_pred cccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCccccc
Q psy7602 6 MTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDD 50 (95)
Q Consensus 6 ~~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~ 50 (95)
...++|||.||.+|+..|++.+ ..||. |+..++.
T Consensus 39 ~~~l~C~H~fh~~Ci~~w~~~~---------~~CP~--Cr~~~~~ 72 (75)
T 1x4j_A 39 LRVLPCNHEFHAKCVDKWLKAN---------RTCPI--CRADSGP 72 (75)
T ss_dssp EEEETTTEEEETTHHHHHHHHC---------SSCTT--TCCCCCC
T ss_pred EEEECCCCHhHHHHHHHHHHcC---------CcCcC--cCCcCCC
Confidence 3557899999999999998642 25875 8776654
No 37
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=96.99 E-value=0.00025 Score=42.85 Aligned_cols=34 Identities=26% Similarity=0.594 Sum_probs=25.8
Q ss_pred cccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCccccc
Q psy7602 6 MTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDD 50 (95)
Q Consensus 6 ~~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~ 50 (95)
...++|||.||..|+..|+.. . -.||. |+..++.
T Consensus 56 ~~~l~C~H~Fh~~Ci~~wl~~----~-----~~CP~--Cr~~~~~ 89 (91)
T 2l0b_A 56 ATELPCHHYFHKPCVSIWLQK----S-----GTCPV--CRCMFPP 89 (91)
T ss_dssp EEEETTTEEEEHHHHHHHHTT----T-----CBCTT--TCCBSSC
T ss_pred EEecCCCChHHHHHHHHHHHc----C-----CcCcC--cCccCCC
Confidence 455889999999999999853 1 26875 8776654
No 38
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=96.98 E-value=0.00022 Score=41.40 Aligned_cols=34 Identities=18% Similarity=0.511 Sum_probs=25.9
Q ss_pred CcccCC-CCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcc
Q psy7602 5 LMTGLE-CSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNIL 47 (95)
Q Consensus 5 ~~~~l~-CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~ 47 (95)
+-+.+. |||.||..|+.+++..+ + ...||. |+..
T Consensus 27 ~p~~~~~CgH~fC~~Ci~~~~~~~----~---~~~CP~--Cr~~ 61 (74)
T 2yur_A 27 DAVVIPCCGNSYCDECIRTALLES----D---EHTCPT--CHQN 61 (74)
T ss_dssp TCEECSSSCCEECTTHHHHHHHHS----S---SSCCSS--SCCS
T ss_pred CCeEcCCCCCHHHHHHHHHHHHhc----C---CCcCCC--CCCc
Confidence 345577 99999999999999752 2 357886 7764
No 39
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.98 E-value=0.00023 Score=41.01 Aligned_cols=33 Identities=27% Similarity=0.650 Sum_probs=24.6
Q ss_pred cccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccc
Q psy7602 6 MTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVD 49 (95)
Q Consensus 6 ~~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~ 49 (95)
...+.|||.||.+|+.+|++.+ ..||. |+..+.
T Consensus 31 ~~~~~C~H~f~~~Ci~~~~~~~---------~~CP~--Cr~~~~ 63 (74)
T 2ep4_A 31 LGICPCKHAFHRKCLIKWLEVR---------KVCPL--CNMPVL 63 (74)
T ss_dssp EEEETTTEEEEHHHHHHHHHHC---------SBCTT--TCCBCS
T ss_pred EEEcCCCCEecHHHHHHHHHcC---------CcCCC--cCcccc
Confidence 4456899999999999998642 26875 776554
No 40
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=96.95 E-value=0.00038 Score=46.02 Aligned_cols=37 Identities=22% Similarity=0.528 Sum_probs=29.0
Q ss_pred CcccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccc
Q psy7602 5 LMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDG 51 (95)
Q Consensus 5 ~~~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~ 51 (95)
+-+.+.|||.||..|+..++.. + ...||. |...+...
T Consensus 90 ~pv~~~CgH~fC~~Ci~~~~~~-----~---~~~CP~--Cr~~~~~~ 126 (150)
T 1z6u_A 90 QPVTTECFHNVCKDCLQRSFKA-----Q---VFSCPA--CRHDLGQN 126 (150)
T ss_dssp SEEECTTSCEEEHHHHHHHHHT-----T---CCBCTT--TCCBCCTT
T ss_pred CCEEcCCCCchhHHHHHHHHHh-----C---CCcCCC--CCccCCCC
Confidence 3455899999999999999973 1 357986 88877765
No 41
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=96.89 E-value=0.0011 Score=39.79 Aligned_cols=39 Identities=8% Similarity=-0.119 Sum_probs=28.4
Q ss_pred CCcccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccchh
Q psy7602 4 TLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKP 53 (95)
Q Consensus 4 ~~~~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~~i 53 (95)
.+-+.++|||.||+.|+..|+.. . .+||. |+..++.+.+
T Consensus 25 ~dPV~~~cGhtf~r~~I~~~l~~----~-----~~cP~--~~~~l~~~~l 63 (85)
T 2kr4_A 25 TDPVRLPSGTVMDRSIILRHLLN----S-----PTDPF--NRQMLTESML 63 (85)
T ss_dssp SSEEECTTSCEEEHHHHHHHHHH----C-----SBCTT--TCCBCCGGGC
T ss_pred cCCeECCCCCEECHHHHHHHHhc----C-----CCCCC--CcCCCChHhc
Confidence 45566889999999999999973 1 35776 6666665543
No 42
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=96.83 E-value=0.0005 Score=41.16 Aligned_cols=35 Identities=17% Similarity=0.470 Sum_probs=26.5
Q ss_pred CcccCC-CCchhhHHHHHHHHHhhhhcCCceeeeecCccccCccc
Q psy7602 5 LMTGLE-CSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILV 48 (95)
Q Consensus 5 ~~~~l~-CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i 48 (95)
+-+.+. |||.||..|+..++.. .+ ...||. |+..+
T Consensus 25 ~p~~~~~CgH~fC~~Ci~~~~~~----~~---~~~CP~--Cr~~~ 60 (92)
T 3ztg_A 25 DAVVIPCCGNSYCDECIRTALLE----SD---EHTCPT--CHQND 60 (92)
T ss_dssp SCEECTTTCCEECHHHHHHHHHH----CT---TCCCTT--TCCSS
T ss_pred CceECCCCCCHHHHHHHHHHHHh----cC---CCcCcC--CCCcC
Confidence 345677 9999999999999873 22 268986 88765
No 43
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.73 E-value=0.00017 Score=45.39 Aligned_cols=34 Identities=24% Similarity=0.530 Sum_probs=25.6
Q ss_pred CcccC-CCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccc
Q psy7602 5 LMTGL-ECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDG 51 (95)
Q Consensus 5 ~~~~l-~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~ 51 (95)
+-+.+ .|||.||..|+..++. ..||. |+..+...
T Consensus 34 ~pv~~~~CgH~fC~~Ci~~~~~-----------~~CP~--Cr~~~~~~ 68 (117)
T 1jm7_B 34 EPVCLGGCEHIFCSNCVSDCIG-----------TGCPV--CYTPAWIQ 68 (117)
T ss_dssp SCBCCCSSSCCBCTTTGGGGTT-----------TBCSS--SCCBCSCS
T ss_pred CccEeCCCCCHHHHHHHHHHhc-----------CCCcC--CCCcCccc
Confidence 44556 8999999999988864 46885 87766544
No 44
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=96.66 E-value=0.00099 Score=41.27 Aligned_cols=56 Identities=5% Similarity=-0.201 Sum_probs=35.2
Q ss_pred CCcccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccchhhhHHHHHHHHHHHHHhhC
Q psy7602 4 TLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKPIEFDVYQGILSNQVTNCR 71 (95)
Q Consensus 4 ~~~~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~~i~~l~ky~~~l~~~~v~~~ 71 (95)
.+-+.++|||.||+.|+..|+.. . .+||. |+..++.+.+..-... +-+++.+.+.+
T Consensus 40 ~dPV~~~cGhtf~r~~I~~~l~~----~-----~~cP~--~~~~l~~~~L~pn~~L-k~~I~~~~~~~ 95 (100)
T 2kre_A 40 TDPVRLPSGTIMDRSIILRHLLN----S-----PTDPF--NRQTLTESMLEPVPEL-KEQIQAWMREK 95 (100)
T ss_dssp SSEEEETTTEEEEHHHHHHHTTS----C-----SBCSS--SCCBCCTTSSEECHHH-HHHHHHHHHTT
T ss_pred cCCeECCCCCEEchHHHHHHHHc----C-----CCCCC--CCCCCChhhceECHHH-HHHHHHHHHHh
Confidence 44566789999999999999863 1 35775 7776665543322222 22344555555
No 45
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=96.66 E-value=0.00034 Score=45.26 Aligned_cols=35 Identities=29% Similarity=0.764 Sum_probs=26.5
Q ss_pred CcccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCccccc
Q psy7602 5 LMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDD 50 (95)
Q Consensus 5 ~~~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~ 50 (95)
+.+.++|||.||.+|+..|+.. ...||. |...+..
T Consensus 65 ~~~~~~CgH~fc~~Ci~~~~~~---------~~~CP~--Cr~~~~~ 99 (138)
T 4ayc_A 65 EAVTLNCAHSFCSYCINEWMKR---------KIECPI--CRKDIKS 99 (138)
T ss_dssp SEEEETTSCEEEHHHHHHHTTT---------CSBCTT--TCCBCCC
T ss_pred CceECCCCCCccHHHHHHHHHc---------CCcCCC--CCCcCCC
Confidence 4566899999999999998642 235986 8877654
No 46
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=96.63 E-value=0.00053 Score=38.74 Aligned_cols=33 Identities=27% Similarity=0.776 Sum_probs=25.0
Q ss_pred cccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccc
Q psy7602 6 MTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVD 49 (95)
Q Consensus 6 ~~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~ 49 (95)
...++|||.||.+|+..|++.+ ..||. |+..+.
T Consensus 19 ~~~~~C~H~fc~~Ci~~~~~~~---------~~CP~--Cr~~~~ 51 (68)
T 1chc_A 19 SMALPCLHAFCYVCITRWIRQN---------PTCPL--CKVPVE 51 (68)
T ss_dssp EEETTTTEEESTTHHHHHHHHS---------CSTTT--TCCCCC
T ss_pred cEecCCCCeeHHHHHHHHHhCc---------CcCcC--CChhhH
Confidence 3568999999999999998531 36875 776554
No 47
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=96.54 E-value=0.00072 Score=42.41 Aligned_cols=37 Identities=27% Similarity=0.682 Sum_probs=29.0
Q ss_pred ccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccchhh
Q psy7602 7 TGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKPI 54 (95)
Q Consensus 7 ~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~~i~ 54 (95)
..++|||.||.+|+..++.. .-.||. |+..++.+.+.
T Consensus 93 ~~~~CgH~fc~~Ci~~~~~~---------~~~CP~--Cr~~~~~~~~~ 129 (133)
T 4ap4_A 93 VSTECGHVFCSQCLRDSLKN---------ANTCPT--CRKKINHKRYH 129 (133)
T ss_dssp EEETTSBEEEHHHHHHHHHH---------CSBCTT--TCCBCCGGGEE
T ss_pred EeCCCCChhhHHHHHHHHHc---------CCCCCC--CCCcCChhcce
Confidence 55789999999999999863 137885 88888776654
No 48
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=96.46 E-value=0.00045 Score=37.43 Aligned_cols=32 Identities=28% Similarity=0.628 Sum_probs=23.0
Q ss_pred cccCC-CCchhhHHHHHHHHHhhhhcCCceeeeecCccccCccc
Q psy7602 6 MTGLE-CSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILV 48 (95)
Q Consensus 6 ~~~l~-CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i 48 (95)
...+. |||.||.+|+.+|++. ...||. |+..+
T Consensus 21 ~~~~~~C~H~f~~~Ci~~w~~~---------~~~CP~--Cr~~~ 53 (55)
T 1iym_A 21 ARFLPRCGHGFHAECVDMWLGS---------HSTCPL--CRLTV 53 (55)
T ss_dssp CEECSSSCCEECTTHHHHTTTT---------CCSCSS--SCCCS
T ss_pred eEECCCCCCcccHHHHHHHHHc---------CCcCcC--CCCEe
Confidence 45565 9999999999999743 135775 66544
No 49
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=96.31 E-value=0.003 Score=38.88 Aligned_cols=56 Identities=7% Similarity=-0.215 Sum_probs=35.4
Q ss_pred CCcccCCCC-chhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccchhhhHHHHHHHHHHHHHhhC
Q psy7602 4 TLMTGLECS-HRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKPIEFDVYQGILSNQVTNCR 71 (95)
Q Consensus 4 ~~~~~l~Cg-H~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~~i~~l~ky~~~l~~~~v~~~ 71 (95)
.+-+.++|| |.||+.|+..|+.. . -+||. |+..++.+.+...... +-+++.+.+.+
T Consensus 33 ~dPV~~~cG~htf~r~cI~~~l~~----~-----~~cP~--~~~~l~~~~L~pn~~L-k~~I~~~~~~~ 89 (98)
T 1wgm_A 33 CDPVVLPSSRVTVDRSTIARHLLS----D-----QTDPF--NRSPLTMDQIRPNTEL-KEKIQRWLAER 89 (98)
T ss_dssp SSEEECTTTCCEEEHHHHHHHTTT----S-----CBCTT--TCSBCCTTTSEECHHH-HHHHHHHHHHS
T ss_pred cCCeECCCCCeEECHHHHHHHHHh----C-----CCCCC--CCCCCChhhceEcHHH-HHHHHHHHHHc
Confidence 455668999 99999999999874 1 25876 7777766544322222 22334455554
No 50
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.28 E-value=0.00034 Score=38.69 Aligned_cols=31 Identities=23% Similarity=0.544 Sum_probs=22.2
Q ss_pred CcccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccc
Q psy7602 5 LMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVD 49 (95)
Q Consensus 5 ~~~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~ 49 (95)
+...++|||.||..|+.. ....||. |+..+.
T Consensus 18 ~p~~l~CgH~fC~~Ci~~------------~~~~CP~--Cr~~~~ 48 (56)
T 1bor_A 18 CPKLLPCLHTLCSGCLEA------------SGMQCPI--CQAPWP 48 (56)
T ss_dssp CCSCSTTSCCSBTTTCSS------------SSSSCSS--CCSSSS
T ss_pred CeEEcCCCCcccHHHHcc------------CCCCCCc--CCcEee
Confidence 345689999999999754 1467886 776554
No 51
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.16 E-value=0.00058 Score=38.84 Aligned_cols=33 Identities=24% Similarity=0.690 Sum_probs=24.2
Q ss_pred ccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCccccc
Q psy7602 7 TGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDD 50 (95)
Q Consensus 7 ~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~ 50 (95)
..++|||.||.+|+..++.. ...||. |+..+..
T Consensus 28 ~~~~CgH~fc~~Ci~~~~~~---------~~~CP~--Cr~~~~~ 60 (70)
T 2ecn_A 28 LILPCAHSFCQKCIDKWSDR---------HRNCPI--CRLQMTG 60 (70)
T ss_dssp EEETTTEEECHHHHHHSSCC---------CSSCHH--HHHCTTC
T ss_pred cccCCCCcccHHHHHHHHHC---------cCcCCC--cCCcccC
Confidence 56789999999999988651 346774 7665543
No 52
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=95.98 E-value=0.0031 Score=44.02 Aligned_cols=57 Identities=7% Similarity=-0.148 Sum_probs=36.5
Q ss_pred CCcccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccchhhhHHHHHHHHHHHHHhhC
Q psy7602 4 TLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKPIEFDVYQGILSNQVTNCR 71 (95)
Q Consensus 4 ~~~~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~~i~~l~ky~~~l~~~~v~~~ 71 (95)
.+-+.++|||.||+.|+..|+.. ++. .||. |+..++.+.+..-.. -+-+++.|++.+
T Consensus 219 ~dPv~~~~gh~f~~~~i~~~~~~----~~~----~cP~--~~~~~~~~~l~~n~~-l~~~i~~~~~~~ 275 (281)
T 2c2l_A 219 REPCITPSGITYDRKDIEEHLQR----VGH----FNPV--TRSPLTQEQLIPNLA-MKEVIDAFISEN 275 (281)
T ss_dssp SSEEECSSCCEEETTHHHHHHHH----TCS----SCTT--TCCCCCGGGCEECHH-HHHHHHHHHTTC
T ss_pred cCCeECCCCCEECHHHHHHHHHH----CCC----CCcC--CCCCCchhcCcccHH-HHHHHHHHHHHC
Confidence 45566889999999999999964 222 2886 888777654332122 223345666665
No 53
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.94 E-value=0.0019 Score=38.13 Aligned_cols=32 Identities=22% Similarity=0.490 Sum_probs=24.7
Q ss_pred CCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccch
Q psy7602 10 ECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGK 52 (95)
Q Consensus 10 ~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~~ 52 (95)
.|||.|+.+|+.+++..+ -.||. |+..+....
T Consensus 47 ~C~H~FH~~Ci~~Wl~~~---------~~CP~--CR~~~~~~~ 78 (81)
T 2ecl_A 47 ECNHSFHNCCMSLWVKQN---------NRCPL--CQQDWVVQR 78 (81)
T ss_dssp TTSCEEEHHHHHHHTTTC---------CBCTT--TCCBCCEEE
T ss_pred CCCCccChHHHHHHHHhC---------CCCCC--cCCCcchhh
Confidence 599999999999998642 26886 887766544
No 54
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=95.90 E-value=0.00066 Score=42.33 Aligned_cols=36 Identities=22% Similarity=0.630 Sum_probs=26.5
Q ss_pred CcccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCccccc
Q psy7602 5 LMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDD 50 (95)
Q Consensus 5 ~~~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~ 50 (95)
+.+.+.|||.||..|+..++.. + ...||. |+..+..
T Consensus 27 ~p~~~~CgH~fC~~Ci~~~~~~-----~---~~~CP~--Cr~~~~~ 62 (115)
T 3l11_A 27 EPVTLPCNHTLCKPCFQSTVEK-----A---SLCCPF--CRRRVSS 62 (115)
T ss_dssp SCEECTTSCEECHHHHCCCCCT-----T---TSBCTT--TCCBCHH
T ss_pred ceeEcCCCCHHhHHHHHHHHhH-----C---cCCCCC--CCcccCc
Confidence 3456799999999999887742 2 267985 8877653
No 55
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=95.87 E-value=0.0016 Score=37.82 Aligned_cols=32 Identities=22% Similarity=0.472 Sum_probs=22.7
Q ss_pred CCcccCCCCch-hhHHHHHHHHHhhhhcCCceeeeecCccccCccccc
Q psy7602 4 TLMTGLECSHR-FCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDD 50 (95)
Q Consensus 4 ~~~~~l~CgH~-FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~ 50 (95)
.+...++|||. ||.+|+..+ ..||. |+..+..
T Consensus 35 ~~~~~~pCgH~~~C~~C~~~~-------------~~CP~--Cr~~i~~ 67 (74)
T 4ic3_A 35 IAIVFVPCGHLVTCKQCAEAV-------------DKCPM--CYTVITF 67 (74)
T ss_dssp CCEEEETTCCBCCCHHHHTTC-------------SBCTT--TCCBCSE
T ss_pred CCEEEcCCCChhHHHHhhhcC-------------ccCCC--cCcCccC
Confidence 34566799999 999997643 46765 7665543
No 56
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=95.60 E-value=0.0001 Score=44.66 Aligned_cols=26 Identities=8% Similarity=0.010 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHhhCCCCCCCCCCCCeeeCCCCCCcc
Q psy7602 57 DVYQGILSNQVTNCRLASLVPCKCSWVRFPPGADFIL 93 (95)
Q Consensus 57 ~ky~~~l~~~~v~~~~~~~~~~~~~~~~~CP~~~C~~ 93 (95)
++|++++++++|+.++ +++||| +|+.
T Consensus 8 e~y~~~l~e~~v~~~~---------~~~wCP--~C~~ 33 (86)
T 2ct7_A 8 ALFHKKLTEGVLMRDP---------KFLWCA--QCSF 33 (86)
T ss_dssp CSSSSCCCCSCCCSCC---------CEECCS--SSCC
T ss_pred HHHHHHHHHHHHhcCC---------CEeECc--CCCc
Confidence 5788888999998884 999999 8975
No 57
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=95.58 E-value=0.0044 Score=40.86 Aligned_cols=31 Identities=35% Similarity=0.829 Sum_probs=24.6
Q ss_pred CCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccc
Q psy7602 9 LECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVD 49 (95)
Q Consensus 9 l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~ 49 (95)
+.|||.||..|+..++.. + ...||. |+..+.
T Consensus 71 ~~CgH~fC~~Ci~~~~~~-----~---~~~CP~--Cr~~~~ 101 (165)
T 2ckl_B 71 KECLHRFCADCIITALRS-----G---NKECPT--CRKKLV 101 (165)
T ss_dssp TTTCCEEEHHHHHHHHHT-----T---CCBCTT--TCCBCC
T ss_pred CCCCChhHHHHHHHHHHh-----C---cCCCCC--CCCcCC
Confidence 499999999999999863 2 356886 887764
No 58
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=95.34 E-value=0.006 Score=46.30 Aligned_cols=39 Identities=18% Similarity=0.461 Sum_probs=28.8
Q ss_pred CCcccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccch
Q psy7602 4 TLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGK 52 (95)
Q Consensus 4 ~~~~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~~ 52 (95)
.+...++|||.||..|...++.. + ...||. |+..+....
T Consensus 343 ~~pv~lpCGH~FC~~Ci~~wl~~-----~---~~~CP~--CR~~i~~~~ 381 (389)
T 2y1n_A 343 KDVKIEPCGHLMCTSCLTSWQES-----E---GQGCPF--CRCEIKGTE 381 (389)
T ss_dssp CCEEEETTCCEECHHHHHHHHHH-----T---CSBCTT--TCCBCCEEE
T ss_pred CCeEEeCCCChhhHHHHHHHHhc-----C---CCCCCC--CCCccCCce
Confidence 34556899999999999999873 1 246885 887766544
No 59
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=95.18 E-value=0.014 Score=39.91 Aligned_cols=58 Identities=7% Similarity=-0.157 Sum_probs=37.0
Q ss_pred CCCcccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccccchhhhHHHHHHHHHHHHHhhC
Q psy7602 3 STLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKPIEFDVYQGILSNQVTNCR 71 (95)
Q Consensus 3 ~~~~~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~~~i~~l~ky~~~l~~~~v~~~ 71 (95)
+.+-+.++|||.||+.|+..|+.. +|. .||. |+..++.+.+..-.. .+-+++.+...|
T Consensus 116 m~DPV~~~~Ghtfer~~I~~~l~~----~~~----tcP~--t~~~l~~~~L~pN~~-Lk~~Ie~~~~~~ 173 (179)
T 2f42_A 116 MREPCITPSGITYDRKDIEEHLQR----VGH----FDPV--TRSPLTQDQLIPNLA-MKEVIDAFIQEN 173 (179)
T ss_dssp CSSEEECTTSCEEEHHHHHHHHHH----TCS----BCTT--TCCBCCGGGCEECHH-HHHHHHHHHHHC
T ss_pred CCCCeECCCCCEECHHHHHHHHHh----CCC----CCCC--CcCCCChhhCcchHH-HHHHHHHHHHHC
Confidence 345566799999999999999975 232 5886 777776654432222 223344555555
No 60
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.01 E-value=0.012 Score=34.01 Aligned_cols=32 Identities=22% Similarity=0.483 Sum_probs=23.1
Q ss_pred CCcccCCCCch-hhHHHHHHHHHhhhhcCCceeeeecCccccCccccc
Q psy7602 4 TLMTGLECSHR-FCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDD 50 (95)
Q Consensus 4 ~~~~~l~CgH~-FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~ 50 (95)
.+...++|||. ||.+|+.. ...||. |+..+..
T Consensus 36 ~~~~~~pCgH~~~C~~C~~~-------------~~~CP~--Cr~~i~~ 68 (75)
T 2ecg_A 36 IAIVFVPCGHLVTCKQCAEA-------------VDKCPM--CYTVITF 68 (75)
T ss_dssp CCBCCSSSCCCCBCHHHHHH-------------CSBCTT--TCCBCCC
T ss_pred CCEEEecCCCHHHHHHHhhC-------------CCCCcc--CCceecC
Confidence 45566899999 99999842 146875 7776654
No 61
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=93.17 E-value=0.023 Score=35.49 Aligned_cols=32 Identities=25% Similarity=0.395 Sum_probs=23.9
Q ss_pred ccCCCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccc
Q psy7602 7 TGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVD 49 (95)
Q Consensus 7 ~~l~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~ 49 (95)
..+.|+|.|+..|+..+|.. .-.||. |+..+.
T Consensus 69 ~~~~C~H~FH~~Ci~~Wl~~---------~~~CP~--Cr~~~~ 100 (106)
T 3dpl_R 69 AWGVCNHAFHFHCISRWLKT---------RQVCPL--DNREWE 100 (106)
T ss_dssp EEETTSCEEEHHHHHHHHTT---------CSBCSS--SCSBCC
T ss_pred eecccCcEECHHHHHHHHHc---------CCcCcC--CCCcce
Confidence 44789999999999999864 135774 766544
No 62
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=91.93 E-value=0.047 Score=32.02 Aligned_cols=32 Identities=25% Similarity=0.566 Sum_probs=22.7
Q ss_pred CCcccCCCCch-hhHHHHHHHHHhhhhcCCceeeeecCccccCccccc
Q psy7602 4 TLMTGLECSHR-FCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDD 50 (95)
Q Consensus 4 ~~~~~l~CgH~-FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~ 50 (95)
.+...++|||. ||.+|...+ ..||. |+..+..
T Consensus 29 ~~~v~~pCgH~~~C~~C~~~~-------------~~CP~--Cr~~i~~ 61 (79)
T 2yho_A 29 INSTFCPCGHTVCCESCAAQL-------------QSCPV--CRSRVEH 61 (79)
T ss_dssp CCEEEETTCBCCBCHHHHTTC-------------SBCTT--TCCBCCE
T ss_pred CcEEEECCCCHHHHHHHHHhc-------------CcCCC--CCchhhC
Confidence 34566899999 999998632 27775 7766554
No 63
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.57 E-value=0.051 Score=30.99 Aligned_cols=18 Identities=28% Similarity=0.571 Sum_probs=15.3
Q ss_pred CCcccCCCCch-hhHHHHH
Q psy7602 4 TLMTGLECSHR-FCTQCWC 21 (95)
Q Consensus 4 ~~~~~l~CgH~-FC~~C~~ 21 (95)
.+...++|||. ||.+|..
T Consensus 26 ~~~v~~pCgH~~~C~~C~~ 44 (68)
T 2ea5_A 26 VNWVLLPCRHTCLCDGCVK 44 (68)
T ss_dssp CCCEETTTTBCCSCTTHHH
T ss_pred CCEEEECCCChhhhHHHHh
Confidence 35666899999 9999987
No 64
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=91.30 E-value=0.054 Score=30.42 Aligned_cols=29 Identities=17% Similarity=0.439 Sum_probs=21.5
Q ss_pred CCCch-hhHHHHHHHHHhhhhcCCceeeeecCccccCcccc
Q psy7602 10 ECSHR-FCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVD 49 (95)
Q Consensus 10 ~CgH~-FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~ 49 (95)
+|||. ||.+|...+.+. + -.||. |+..|.
T Consensus 27 pCgH~~~C~~C~~~~~~~-----~----~~CPi--CR~~i~ 56 (64)
T 2vje_A 27 KTGHLMACFTCAKKLKKR-----N----KPCPV--CRQPIQ 56 (64)
T ss_dssp TEEEEEECHHHHHHHHHT-----T----CCCTT--TCCCCC
T ss_pred CCCChhhHHHHHHHHHHc-----C----CcCCC--cCcchh
Confidence 99999 899999987642 1 25775 777664
No 65
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=89.46 E-value=0.092 Score=29.31 Aligned_cols=30 Identities=20% Similarity=0.468 Sum_probs=21.7
Q ss_pred CCCCch-hhHHHHHHHHHhhhhcCCceeeeecCccccCcccc
Q psy7602 9 LECSHR-FCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVD 49 (95)
Q Consensus 9 l~CgH~-FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~ 49 (95)
++|||. ||.+|...+.+. + -+||. |+..|.
T Consensus 25 ~pCgH~~~C~~C~~~~~~~-----~----~~CPi--CR~~i~ 55 (63)
T 2vje_B 25 GRTGHLVTCFHCARRLKKA-----G----ASCPI--CKKEIQ 55 (63)
T ss_dssp TTEEEEEECHHHHHHHHHT-----T----CBCTT--TCCBCC
T ss_pred cCCCCHhHHHHHHHHHHHh-----C----CcCCC--cCchhh
Confidence 399998 999999876532 1 36875 777664
No 66
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=89.42 E-value=0.2 Score=30.40 Aligned_cols=30 Identities=30% Similarity=0.697 Sum_probs=24.2
Q ss_pred CchhhHHHHHHHHHhhhhcCCceeeeecCcc-ccC
Q psy7602 12 SHRFCTQCWCEYLTTKIIQEGMGQTIACAAH-GCN 45 (95)
Q Consensus 12 gH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~-~C~ 45 (95)
.|+||--|-+.||+.+-. ++ .+.||.. +|.
T Consensus 38 ~HkFCFpCsr~sIk~q~~-~~---EvyCPSG~kCp 68 (93)
T 2cs3_A 38 SHKFCFPCSRESIKAQGA-TG---EVYCPSGEKCP 68 (93)
T ss_dssp SCEECHHHHHHHHHHHHS-SS---CCCCTTSSCCB
T ss_pred CCeeeccccHHHHHhcCC-CC---cEECCCCCccc
Confidence 699999999999999865 33 5899986 464
No 67
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=89.40 E-value=0.068 Score=33.99 Aligned_cols=18 Identities=33% Similarity=0.687 Sum_probs=0.0
Q ss_pred CCCCchhhHHHHHHHHHh
Q psy7602 9 LECSHRFCTQCWCEYLTT 26 (95)
Q Consensus 9 l~CgH~FC~~C~~~yl~~ 26 (95)
+.|+|.|+..|+..+|..
T Consensus 82 ~~C~H~FH~~CI~~Wl~~ 99 (117)
T 4a0k_B 82 GVCNHAFHFHCISRWLKT 99 (117)
T ss_dssp ------------------
T ss_pred CCcCceEcHHHHHHHHHc
Confidence 589999999999999876
No 68
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=88.35 E-value=0.22 Score=27.81 Aligned_cols=23 Identities=9% Similarity=-0.032 Sum_probs=19.0
Q ss_pred CCcccC-CCCchhhHHHHHHHHHh
Q psy7602 4 TLMTGL-ECSHRFCTQCWCEYLTT 26 (95)
Q Consensus 4 ~~~~~l-~CgH~FC~~C~~~yl~~ 26 (95)
++-+.+ .+||.|+++++..||..
T Consensus 14 ~dPV~~~~sG~~yer~~I~~~l~~ 37 (61)
T 2bay_A 14 RRPVLSPKSRTIFEKSLLEQYVKD 37 (61)
T ss_dssp SSEEEETTTTEEEEHHHHHHHHHH
T ss_pred CCCEEeCCCCcEEcHHHHHHHHHh
Confidence 344556 89999999999999974
No 69
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=87.51 E-value=0.2 Score=31.31 Aligned_cols=18 Identities=28% Similarity=0.641 Sum_probs=15.7
Q ss_pred CCCCchhhHHHHHHHHHh
Q psy7602 9 LECSHRFCTQCWCEYLTT 26 (95)
Q Consensus 9 l~CgH~FC~~C~~~yl~~ 26 (95)
++|+|.||.+|...|-..
T Consensus 18 IPCkHvFCydCa~~~~~~ 35 (101)
T 3vk6_A 18 IPCKHVFCYDCAILHEKK 35 (101)
T ss_dssp ETTCCEEEHHHHHHHHHT
T ss_pred ccccccHHHHHHHHHHhc
Confidence 589999999999988654
No 70
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=86.83 E-value=0.068 Score=39.71 Aligned_cols=32 Identities=19% Similarity=0.548 Sum_probs=23.2
Q ss_pred CCcccCCCCch-hhHHHHHHHHHhhhhcCCceeeeecCccccCccccc
Q psy7602 4 TLMTGLECSHR-FCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDD 50 (95)
Q Consensus 4 ~~~~~l~CgH~-FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~ 50 (95)
.+...++|||. ||..|+..+ ..||. |+..+..
T Consensus 306 ~~~v~lpCgH~~fC~~C~~~~-------------~~CP~--CR~~i~~ 338 (345)
T 3t6p_A 306 VSVVFIPCGHLVVCQECAPSL-------------RKCPI--CRGIIKG 338 (345)
T ss_dssp CCEEEETTCCEEECTTTGGGC-------------SBCTT--TCCBCCE
T ss_pred CceEEcCCCChhHhHHHHhcC-------------CcCCC--CCCCccC
Confidence 34566899999 999997633 46875 7776654
No 71
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=80.69 E-value=0.55 Score=28.03 Aligned_cols=14 Identities=21% Similarity=0.892 Sum_probs=13.4
Q ss_pred CCCCchhhHHHHHH
Q psy7602 9 LECSHRFCTQCWCE 22 (95)
Q Consensus 9 l~CgH~FC~~C~~~ 22 (95)
+.|+|.||..|++.
T Consensus 22 ~~C~~~~C~~Cl~~ 35 (101)
T 2jun_A 22 VTCEVSYCDECLKA 35 (101)
T ss_dssp TTTTEEECHHHHHH
T ss_pred CcCChHHhHHHCHH
Confidence 88999999999998
No 72
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.10 E-value=0.93 Score=26.54 Aligned_cols=35 Identities=17% Similarity=0.353 Sum_probs=26.3
Q ss_pred ccCCCC-----chhhHHHHHHHHHhhhhcCCceeeeecCccccCccccc
Q psy7602 7 TGLECS-----HRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDD 50 (95)
Q Consensus 7 ~~l~Cg-----H~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~~ 50 (95)
..++|+ |.|..+|+.+||..+ + ...||. |+..+..
T Consensus 31 l~~pC~C~Gs~h~fH~~Cl~~Wl~~~----~---~~~Cpl--Cr~~~~~ 70 (80)
T 2d8s_A 31 LITPCHCTGSLHFVHQACLQQWIKSS----D---TRCCEL--CKYEFIM 70 (80)
T ss_dssp EECSSSCCSSSCCEETTHHHHHHHHH----C---CSBCSS--SCCBCCC
T ss_pred eEeccccCCcCCeeCHHHHHHHHhhC----C---CCCCCC--CCCeeec
Confidence 457886 999999999999863 1 357886 7766544
No 73
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=76.57 E-value=0.9 Score=34.32 Aligned_cols=42 Identities=14% Similarity=0.197 Sum_probs=30.4
Q ss_pred cCCCCchhhHHHHHHHHHhhhhcCCcee---eeecCccccCcccccch
Q psy7602 8 GLECSHRFCTQCWCEYLTTKIIQEGMGQ---TIACAAHGCNILVDDGK 52 (95)
Q Consensus 8 ~l~CgH~FC~~C~~~yl~~~I~~~g~~~---~i~Cp~~~C~~~i~~~~ 52 (95)
...|||.|-..|+..|+++.-. .-+++ .=.|| -|+..|+-+.
T Consensus 331 n~~C~h~FH~~CL~kWLrs~~~-sRqSFnvi~G~CP--yCr~pIs~sf 375 (381)
T 3k1l_B 331 NAKCVLKCHAVCLEEWFKTLMD-GKTFLEVSFGQCP--FCKAKLSTSF 375 (381)
T ss_dssp CTTCCCCBCSGGGHHHHHHHHS-SSCTTTCCEEECT--TTCCEEEGGG
T ss_pred CCccCCccchHHHHHHHHhCCC-ccccccccCCCCC--CCCCcCCccH
Confidence 4589999999999999998653 22222 23899 4888777543
No 74
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=75.69 E-value=1.4 Score=27.51 Aligned_cols=20 Identities=20% Similarity=0.632 Sum_probs=16.6
Q ss_pred hhhHHHHHHHHHhhhhcCCc
Q psy7602 14 RFCTQCWCEYLTTKIIQEGM 33 (95)
Q Consensus 14 ~FC~~C~~~yl~~~I~~~g~ 33 (95)
-||++|+..|+.....+.|.
T Consensus 42 GFCRNCLskWy~~aA~e~G~ 61 (105)
T 2o35_A 42 GFCRNCLSNWYREAAEASGV 61 (105)
T ss_dssp SCCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHcCC
Confidence 49999999999998875553
No 75
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=73.58 E-value=1.3 Score=27.53 Aligned_cols=20 Identities=25% Similarity=0.806 Sum_probs=16.2
Q ss_pred hhhHHHHHHHHHhhhhcCCc
Q psy7602 14 RFCTQCWCEYLTTKIIQEGM 33 (95)
Q Consensus 14 ~FC~~C~~~yl~~~I~~~g~ 33 (95)
-||++|+..|+.....+.|.
T Consensus 41 GFCRNCLskWy~~aA~~~G~ 60 (104)
T 3fyb_A 41 DFCRNCLAKWLMEAATEQGV 60 (104)
T ss_dssp SCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHcCC
Confidence 49999999999988864453
No 76
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=67.15 E-value=1.5 Score=25.49 Aligned_cols=31 Identities=23% Similarity=0.548 Sum_probs=23.3
Q ss_pred CCCchhhHHHHHHHHHhhhhcCCceeeeecCccccCcccc
Q psy7602 10 ECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVD 49 (95)
Q Consensus 10 ~CgH~FC~~C~~~yl~~~I~~~g~~~~i~Cp~~~C~~~i~ 49 (95)
.|+|.|=..|+..|++++- .-+||. |+...+
T Consensus 33 ~C~h~fH~~Ci~kWl~~~~-------~~~CP~--Cr~~w~ 63 (74)
T 2ct0_A 33 TCGIRMHLPCVAKYFQSNA-------EPRCPH--CNDYWP 63 (74)
T ss_dssp SSCCEECHHHHHHHSTTCS-------SCCCTT--TCSCCC
T ss_pred CCCchhhHHHHHHHHHhcC-------CCCCCC--CcCcCC
Confidence 7999999999999997532 146875 765544
No 77
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=43.43 E-value=7.2 Score=21.72 Aligned_cols=12 Identities=33% Similarity=0.930 Sum_probs=10.3
Q ss_pred CCCCchhhHHHH
Q psy7602 9 LECSHRFCTQCW 20 (95)
Q Consensus 9 l~CgH~FC~~C~ 20 (95)
..|++.||.+|=
T Consensus 34 ~~C~~~FC~dCD 45 (59)
T 1z60_A 34 AVCQNVFCVDCD 45 (59)
T ss_dssp TTTTCCBCHHHH
T ss_pred CccCcCcccchh
Confidence 579999999993
No 78
>2hu9_A MERP, mercuric transport protein periplasmic component; copper chaperone, iron-sufur protein, COPZ, ATX1, ATOX1, metal transport; 1.78A {Archaeoglobus fulgidus}
Probab=43.24 E-value=5.6 Score=25.59 Aligned_cols=13 Identities=8% Similarity=-0.197 Sum_probs=11.5
Q ss_pred CCeeeCCCCCCcc
Q psy7602 81 SWVRFPPGADFIL 93 (95)
Q Consensus 81 ~~~~~CP~~~C~~ 93 (95)
.++++|++|+|.+
T Consensus 33 ~~y~~C~~~~C~V 45 (130)
T 2hu9_A 33 GDFYFCSLESCEV 45 (130)
T ss_dssp SCEEECCCTTCSE
T ss_pred CCEEeECCCCCCE
Confidence 3899999999986
No 79
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=41.21 E-value=5.8 Score=22.82 Aligned_cols=16 Identities=25% Similarity=0.779 Sum_probs=13.4
Q ss_pred CCC-CchhhHHHHHHHH
Q psy7602 9 LEC-SHRFCTQCWCEYL 24 (95)
Q Consensus 9 l~C-gH~FC~~C~~~yl 24 (95)
+.| |-.||..||++.=
T Consensus 23 ~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 23 AGCDGDLYCARCFREGH 39 (67)
T ss_dssp TTTTSEEECSSHHHHHT
T ss_pred cCCCCceehHHHHHHHc
Confidence 568 7889999999765
No 80
>2jx1_A Myelin transcription factor 1; protein-DNA complex, transcription/DNA complex; HET: DNA; NMR {Mus musculus}
Probab=37.32 E-value=15 Score=17.93 Aligned_cols=10 Identities=20% Similarity=0.079 Sum_probs=7.9
Q ss_pred CCCCCCccCC
Q psy7602 86 PPGADFILNG 95 (95)
Q Consensus 86 CP~~~C~~~~ 95 (95)
||.|+|.=+|
T Consensus 4 CPtpGC~g~G 13 (31)
T 2jx1_A 4 CPTPGCDGSG 13 (31)
T ss_dssp CSCTTCCSSC
T ss_pred CCCCCccccc
Confidence 9999997544
No 81
>3oj3_I Tumor necrosis factor alpha-induced protein 3; ubiquitin, zinc finger, zinc ION, protein binding-hydrolase; 2.50A {Homo sapiens} PDB: 3oj4_C
Probab=35.98 E-value=18 Score=19.44 Aligned_cols=14 Identities=43% Similarity=1.013 Sum_probs=11.7
Q ss_pred chhhHHHHHHHHHh
Q psy7602 13 HRFCTQCWCEYLTT 26 (95)
Q Consensus 13 H~FC~~C~~~yl~~ 26 (95)
.-||..||++|++.
T Consensus 35 ~n~CSkCyre~~en 48 (49)
T 3oj3_I 35 KGFCTLCFIEYREN 48 (49)
T ss_dssp TTBCHHHHHHHHHH
T ss_pred CCcchHHHHHHHHc
Confidence 36999999999874
No 82
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=28.39 E-value=9.7 Score=21.55 Aligned_cols=14 Identities=21% Similarity=0.558 Sum_probs=11.3
Q ss_pred CCCchhhHHHHHHH
Q psy7602 10 ECSHRFCTQCWCEY 23 (95)
Q Consensus 10 ~CgH~FC~~C~~~y 23 (95)
.||+.||.+|-...
T Consensus 32 ~CG~v~C~~Cs~~~ 45 (73)
T 1vfy_A 32 SCGGVFCQEHSSNS 45 (73)
T ss_dssp TTCCEECGGGSCEE
T ss_pred CCCEEEcccccCCe
Confidence 59999999997543
No 83
>2yre_A F-box only protein 30; zinc binding, E3 ubiquitin ligase, SCF, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.22 E-value=6.8 Score=24.19 Aligned_cols=45 Identities=24% Similarity=0.382 Sum_probs=32.6
Q ss_pred CCCCchhhHHHHHHHHHhhhhcCC-ceeeeecCccccCcccccchhhh
Q psy7602 9 LECSHRFCTQCWCEYLTTKIIQEG-MGQTIACAAHGCNILVDDGKPIE 55 (95)
Q Consensus 9 l~CgH~FC~~C~~~yl~~~I~~~g-~~~~i~Cp~~~C~~~i~~~~i~~ 55 (95)
++=.|.-|..|+......++. .| ....|.|| ..|...|....+++
T Consensus 10 ~~~~h~HC~~C~~~~C~~~~~-~~~~C~~i~CP-~~Cga~i~rckL~E 55 (100)
T 2yre_A 10 EELQHSHCVNCVSRRCMTRPE-PGISCDLIGCP-LVCGAVFHSCKADE 55 (100)
T ss_dssp CCCCCTTGGGCCCTTCCCCCC-TTTCCCEEECT-TCCSCEEEHHHHHH
T ss_pred CCccchhHhhhcccccCCCCC-CCCeeeeeeCC-cccCCeeehhhHHH
Confidence 344699999999998888874 44 46688999 46887776554443
No 84
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=26.28 E-value=11 Score=23.62 Aligned_cols=14 Identities=29% Similarity=0.992 Sum_probs=11.5
Q ss_pred CCCchhhHHHHHHH
Q psy7602 10 ECSHRFCTQCWCEY 23 (95)
Q Consensus 10 ~CgH~FC~~C~~~y 23 (95)
.||+.||..|-...
T Consensus 90 ~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 90 QCGNIFCAECSAKN 103 (125)
T ss_dssp TTCCEECGGGSCEE
T ss_pred CCCeEEChHHhCCc
Confidence 59999999997654
No 85
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=25.07 E-value=10 Score=21.93 Aligned_cols=13 Identities=38% Similarity=1.142 Sum_probs=10.9
Q ss_pred CCCchhhHHHHHH
Q psy7602 10 ECSHRFCTQCWCE 22 (95)
Q Consensus 10 ~CgH~FC~~C~~~ 22 (95)
.||..||.+|-..
T Consensus 40 ~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 40 NCGHIFCNTCSSN 52 (82)
T ss_dssp TTCCEECSGGGCE
T ss_pred CCCCEEChHHhCC
Confidence 5999999999764
No 86
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=25.07 E-value=15 Score=19.82 Aligned_cols=13 Identities=15% Similarity=0.158 Sum_probs=9.2
Q ss_pred CeeeCC-CCCCccC
Q psy7602 82 WVRFPP-GADFILN 94 (95)
Q Consensus 82 ~~~~CP-~~~C~~~ 94 (95)
..-||| ++.|.+.
T Consensus 28 ayGwCp~G~~Cp~S 41 (50)
T 2fc6_A 28 AYGWCPLGPQCPQS 41 (50)
T ss_dssp HTCCCTTGGGCSSB
T ss_pred ccccCCCCCCCCcc
Confidence 345899 7888763
No 87
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=24.79 E-value=11 Score=21.85 Aligned_cols=14 Identities=21% Similarity=0.631 Sum_probs=11.4
Q ss_pred CCCchhhHHHHHHH
Q psy7602 10 ECSHRFCTQCWCEY 23 (95)
Q Consensus 10 ~CgH~FC~~C~~~y 23 (95)
.||+.||.+|-...
T Consensus 42 ~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 42 NCGYVLCGDCSRHR 55 (84)
T ss_dssp TTCCEECTGGGCCE
T ss_pred CCCcEEChHHhCCe
Confidence 59999999997653
No 88
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=24.35 E-value=13 Score=21.97 Aligned_cols=15 Identities=27% Similarity=0.709 Sum_probs=11.9
Q ss_pred CCCchhhHHHHHHHH
Q psy7602 10 ECSHRFCTQCWCEYL 24 (95)
Q Consensus 10 ~CgH~FC~~C~~~yl 24 (95)
.||+.||..|-...+
T Consensus 41 ~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 41 ACGKVFCGVCCNRKC 55 (90)
T ss_dssp TTCCEECGGGSCEEE
T ss_pred CCCCEECCcccCCee
Confidence 599999999976543
No 89
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.97 E-value=12 Score=21.71 Aligned_cols=13 Identities=31% Similarity=1.076 Sum_probs=10.7
Q ss_pred CCCchhhHHHHHH
Q psy7602 10 ECSHRFCTQCWCE 22 (95)
Q Consensus 10 ~CgH~FC~~C~~~ 22 (95)
.||..||..|-..
T Consensus 35 ~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 35 NCGNSFCSRCCSF 47 (84)
T ss_dssp SSCCEECTTTSCE
T ss_pred CCCcEEChhhcCC
Confidence 5999999999654
No 90
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=21.65 E-value=16 Score=23.04 Aligned_cols=14 Identities=29% Similarity=0.999 Sum_probs=10.7
Q ss_pred CCCchhhHHHHHHH
Q psy7602 10 ECSHRFCTQCWCEY 23 (95)
Q Consensus 10 ~CgH~FC~~C~~~y 23 (95)
.||..||..|-...
T Consensus 40 ~CG~ifC~~Cs~~~ 53 (120)
T 1y02_A 40 DCKKNFCMTCSSQV 53 (120)
T ss_dssp TTCCEECGGGEEC-
T ss_pred CCCCeeCHHHhCCC
Confidence 59999999996543
No 91
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=21.52 E-value=13 Score=21.95 Aligned_cols=13 Identities=31% Similarity=0.968 Sum_probs=10.4
Q ss_pred CCCchhhHHHHHH
Q psy7602 10 ECSHRFCTQCWCE 22 (95)
Q Consensus 10 ~CgH~FC~~C~~~ 22 (95)
.||+.||..|-..
T Consensus 30 ~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 30 NCGRAFCNGCLSF 42 (88)
T ss_dssp SSCCEEETTTSCE
T ss_pred CCCCEEChhHcCC
Confidence 5899999988654
No 92
>1pxe_A Neural zinc finger transcription factor 1; CCHHC zinc binding domain, neural zinc finger factor-1, DNA binding domain, metal binding protein; NMR {Rattus norvegicus} SCOP: g.73.1.1
Probab=20.45 E-value=39 Score=19.03 Aligned_cols=12 Identities=17% Similarity=-0.042 Sum_probs=9.0
Q ss_pred eeCCCCCCccCC
Q psy7602 84 RFPPGADFILNG 95 (95)
Q Consensus 84 ~~CP~~~C~~~~ 95 (95)
.-||.|+|.=.|
T Consensus 18 ~~CPtpGC~G~G 29 (63)
T 1pxe_A 18 SKCPTPGCDGTG 29 (63)
T ss_dssp CCSCCSSCCCCS
T ss_pred ccCCCCCcCccC
Confidence 449999997544
Done!