RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7602
(95 letters)
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein
4, UIP4, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: g.44.1.1
Length = 94
Score = 41.4 bits (97), Expect = 2e-06
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 9 LECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCN 45
+C FCT C +Y+ I+EG+ I+C C
Sbjct: 24 AQCQCIFCTLCLKQYVELL-IKEGLETAISCPDAACP 59
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid
biosynthesis, hamme structure, selenomethionine,
ligase, transferase; HET: BTN; 1.80A {Escherichia coli}
SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Length = 80
Score = 28.3 bits (64), Expect = 0.12
Identities = 8/12 (66%), Positives = 11/12 (91%)
Query: 46 ILVDDGKPIEFD 57
ILV+ G+P+EFD
Sbjct: 62 ILVESGQPVEFD 73
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein
structure initiativ midwest center for structural
genomics; 2.50A {Bordetella bronchiseptica}
Length = 387
Score = 29.0 bits (65), Expect = 0.19
Identities = 5/24 (20%), Positives = 11/24 (45%), Gaps = 2/24 (8%)
Query: 35 QTIACAAHGCNILVDDGKPIEFDV 58
+ + G +I+V+ KP+
Sbjct: 80 HVVQASEQGLHIIVE--KPLTLSR 101
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring,
ATP-binding, chromosomal protein, coiled coil, DNA
damage; 2.31A {Saccharomyces cerevisiae}
Length = 267
Score = 28.4 bits (62), Expect = 0.32
Identities = 8/40 (20%), Positives = 12/40 (30%), Gaps = 7/40 (17%)
Query: 6 MTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCN 45
+ +C+H F YL T C C+
Sbjct: 195 LISRKCNHVFDRDGIQNYLQG-------YTTRDCPQAACS 227
>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein
structure initiative; HET: NAD; 2.30A {Chromobacterium
violaceum}
Length = 359
Score = 28.1 bits (63), Expect = 0.38
Identities = 5/24 (20%), Positives = 10/24 (41%), Gaps = 2/24 (8%)
Query: 35 QTIACAAHGCNILVDDGKPIEFDV 58
+ + G N+ V+ KP +
Sbjct: 84 MGLLAMSKGVNVFVE--KPPCATL 105
>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint
center for structural genomics, JCSG; HET: MSE; 1.25A
{Pectobacterium atrosepticum SCRI1043}
Length = 336
Score = 27.7 bits (62), Expect = 0.46
Identities = 3/24 (12%), Positives = 6/24 (25%), Gaps = 2/24 (8%)
Query: 35 QTIACAAHGCNILVDDGKPIEFDV 58
+ G + KP +
Sbjct: 82 LALRTLDAGKDFFTA--KPPLTTL 103
>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 2.14A {Thermotoga maritima}
Length = 337
Score = 27.3 bits (61), Expect = 0.63
Identities = 4/24 (16%), Positives = 7/24 (29%), Gaps = 2/24 (8%)
Query: 35 QTIACAAHGCNILVDDGKPIEFDV 58
+ + V+ KPI
Sbjct: 83 ILLEALERKIHAFVE--KPIATTF 104
>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural
genomics, NYSGXRC, PSI, protein structure initiative;
2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5
Length = 319
Score = 27.3 bits (61), Expect = 0.71
Identities = 5/24 (20%), Positives = 10/24 (41%), Gaps = 2/24 (8%)
Query: 35 QTIACAAHGCNILVDDGKPIEFDV 58
G ++ VD KP+ ++
Sbjct: 81 VVSTLLNAGVHVCVD--KPLAENL 102
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein,
rossman fold, putative dehydrogenase, ST genomics; 1.70A
{Desulfitobacterium hafniense dcb-2}
Length = 354
Score = 26.9 bits (60), Expect = 0.89
Identities = 8/24 (33%), Positives = 11/24 (45%), Gaps = 2/24 (8%)
Query: 35 QTIACAAHGCNILVDDGKPIEFDV 58
CA G +I V+ KPI +
Sbjct: 82 VIEQCARSGKHIYVE--KPISVSL 103
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding
oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium
violaceum} PDB: 3q2k_A*
Length = 354
Score = 26.9 bits (60), Expect = 0.97
Identities = 6/20 (30%), Positives = 13/20 (65%), Gaps = 2/20 (10%)
Query: 35 QTIACAAHGCNILVDDGKPI 54
Q+I C+ G +++ + KP+
Sbjct: 91 QSIECSEAGFHVMTE--KPM 108
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc; 2.79A
{Sinorhizobium meliloti}
Length = 361
Score = 26.3 bits (58), Expect = 1.5
Identities = 8/20 (40%), Positives = 10/20 (50%), Gaps = 2/20 (10%)
Query: 35 QTIACAAHGCNILVDDGKPI 54
I HG ++LVD KP
Sbjct: 104 LAIRAMQHGKDVLVD--KPG 121
>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom
protein structure initiative, PSI, NEW YORK structural
GENO research consortium; HET: NAD; 1.95A {Listeria
innocua}
Length = 359
Score = 26.2 bits (58), Expect = 1.6
Identities = 4/27 (14%), Positives = 10/27 (37%), Gaps = 2/27 (7%)
Query: 35 QTIACAAHGCNILVDDGKPIEFDVYQG 61
I+ G +++ + KP+
Sbjct: 81 LAISALEAGKHVVCE--KPVTMTSEDL 105
>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein
structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA
family oxidoreductase; 2.65A {Vibrio cholerae} SCOP:
c.2.1.3 d.81.1.5
Length = 323
Score = 26.2 bits (58), Expect = 1.7
Identities = 5/20 (25%), Positives = 6/20 (30%), Gaps = 2/20 (10%)
Query: 35 QTIACAAHGCNILVDDGKPI 54
G VD KP+
Sbjct: 79 LAAFFLHLGIPTFVD--KPL 96
>3la4_A Urease; JACK bean, hydrolase, ME binding, nickel; HET: CME KCX;
2.05A {Canavalia ensiformis}
Length = 840
Score = 26.4 bits (58), Expect = 1.7
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 6/34 (17%)
Query: 27 KIIQEGMGQTIACAAHGC------NILVDDGKPI 54
K+I++GMGQ+ N ++ D I
Sbjct: 319 KVIRDGMGQSCGHPPAISLDTVITNAVIIDYTGI 352
>1ejx_C Urease alpha subunit; alpha-beta barrel, nickel metalloenzyme,
temperature depende structural changes, hydrolase; HET:
KCX; 1.60A {Klebsiella aerogenes} SCOP: b.92.1.1
c.1.9.2 PDB: 1ejw_C* 1fwj_C* 1kra_C 2kau_C* 1ef2_A*
1ejv_C* 1ejt_C* 1eju_C* 1ejs_C* 1ejr_C* 1krc_C 1krb_C*
1fwi_C* 1fwa_C* 1fwb_C* 1fwc_C* 1fwd_C* 1fwe_C* 1fwg_C*
1a5k_C ...
Length = 567
Score = 26.2 bits (57), Expect = 1.8
Identities = 8/29 (27%), Positives = 18/29 (62%)
Query: 27 KIIQEGMGQTIACAAHGCNILVDDGKPIE 55
K+I++GMGQ AA ++++ + ++
Sbjct: 49 KVIRDGMGQGQMLAADCVDLVLTNALIVD 77
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain;
structural genomics, center for structural genomics of
infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium
difficile}
Length = 308
Score = 26.1 bits (58), Expect = 2.0
Identities = 5/19 (26%), Positives = 8/19 (42%), Gaps = 2/19 (10%)
Query: 36 TIACAAHGCNILVDDGKPI 54
G ++ VD KP+
Sbjct: 83 IKILLNLGVHVYVD--KPL 99
>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics,
putative oxidoreductase YVAA, oxidoredu PSI-2, protein
structure initiative; 2.03A {Bacillus subtilis subsp}
PDB: 3gfg_A
Length = 358
Score = 25.8 bits (57), Expect = 2.6
Identities = 6/20 (30%), Positives = 13/20 (65%), Gaps = 2/20 (10%)
Query: 35 QTIACAAHGCNILVDDGKPI 54
T+AC G +++++ KP+
Sbjct: 81 HTMACIQAGKHVVME--KPM 98
>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC,
structur genomics, protein structure initiative; 1.93A
{Bacteroides fragilis nctc 9343}
Length = 362
Score = 25.7 bits (57), Expect = 2.8
Identities = 5/20 (25%), Positives = 8/20 (40%), Gaps = 2/20 (10%)
Query: 35 QTIACAAHGCNILVDDGKPI 54
G N++V+ KP
Sbjct: 81 YAGMALEAGKNVVVE--KPF 98
>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase,
rossmann-fold, sugar metabolism,
1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A
{Ensifer adhaerens}
Length = 332
Score = 25.3 bits (56), Expect = 3.5
Identities = 7/24 (29%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
Query: 35 QTIACAAHGCNILVDDGKPIEFDV 58
QT+A G ++L + KP+ +
Sbjct: 78 QTLAAIRAGKHVLCE--KPLAMTL 99
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL
conjugation, UBL conjugation pathway; 2.10A {Homo
sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Length = 118
Score = 24.8 bits (54), Expect = 3.6
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 9 LECSHRFCTQCWCEYL 24
C HRFC C + +
Sbjct: 34 TPCGHRFCKACIIKSI 49
>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC,
11136F, structural genomics, protein structure
initiative; 2.04A {Klebsiella pneumoniae subsp}
Length = 364
Score = 25.4 bits (56), Expect = 3.6
Identities = 5/20 (25%), Positives = 8/20 (40%), Gaps = 2/20 (10%)
Query: 35 QTIACAAHGCNILVDDGKPI 54
G +++VD KP
Sbjct: 83 LARLALNAGKHVVVD--KPF 100
>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.00A {Escherichia coli k-12}
Length = 345
Score = 25.4 bits (56), Expect = 3.7
Identities = 6/20 (30%), Positives = 8/20 (40%), Gaps = 2/20 (10%)
Query: 35 QTIACAAHGCNILVDDGKPI 54
G N+LV+ KP
Sbjct: 81 YAKRALEAGKNVLVE--KPF 98
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative
splicing, apoptosis, cytoplasm, metal-binding, UBL
conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Length = 141
Score = 24.7 bits (53), Expect = 4.3
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 9 LECSHRFCTQCWCEYLTTK 27
+C HR+C+ C L++
Sbjct: 47 AQCGHRYCSFCLASILSSG 65
>3qtg_A Pyruvate kinase, PK; TIM barrel, glycolysis, transferase; 2.20A
{Pyrobaculum aerophilum}
Length = 461
Score = 25.2 bits (56), Expect = 4.3
Identities = 5/16 (31%), Positives = 8/16 (50%), Gaps = 1/16 (6%)
Query: 43 GCNILVDDGKPIEFDV 58
IL+ DG+ + V
Sbjct: 129 NDVILMLDGR-LRLKV 143
>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural
genomics, center FO structural genomics of infectious
diseases; HET: MSE; 2.75A {Yersinia pestis}
Length = 352
Score = 25.0 bits (55), Expect = 4.4
Identities = 6/20 (30%), Positives = 10/20 (50%), Gaps = 2/20 (10%)
Query: 35 QTIACAAHGCNILVDDGKPI 54
+ A G +++VD KP
Sbjct: 83 LAQSALAAGKHVVVD--KPF 100
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb,
E3-ligase, nuclear protein, chromosomal protein,
transcription regulation; 2.0A {Mus musculus} PDB:
3rpg_B 2h0d_A
Length = 108
Score = 24.8 bits (54), Expect = 4.4
Identities = 10/22 (45%), Positives = 11/22 (50%)
Query: 6 MTGLECSHRFCTQCWCEYLTTK 27
T +EC H FC C YL T
Sbjct: 29 TTIIECLHSFCKTCIVRYLETS 50
>3hqn_D Pyruvate kinase, PK; TIM barrel, T-state enzyme, transferase,
allosteric enzyme, binding, glycolysis, magnesium,
metal-binding, NUCL binding; 2.00A {Leishmania mexicana}
PDB: 1pkl_A 3hqo_K* 3hqp_A* 3hqq_A* 3is4_A* 3ktx_A*
3qv6_A* 3qv7_D* 3qv8_D* 3e0w_A 3e0v_A 3pp7_A* 3qv9_A*
Length = 499
Score = 24.9 bits (55), Expect = 5.1
Identities = 9/29 (31%), Positives = 11/29 (37%), Gaps = 2/29 (6%)
Query: 43 GCNILVDDGKPIEFDVYQGILSNQVTNCR 71
G I +DDG + V Q Q C
Sbjct: 139 GNYIYIDDGI-LILQV-QSHEDEQTLECT 165
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI
II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase,
tetramer; 2.30A {Corynebacterium glutamicum}
Length = 344
Score = 24.6 bits (54), Expect = 6.1
Identities = 6/24 (25%), Positives = 9/24 (37%), Gaps = 2/24 (8%)
Query: 35 QTIACAAHGCNILVDDGKPIEFDV 58
G L + KPI+ D+
Sbjct: 81 LITRAVERGIPALCE--KPIDLDI 102
>3t05_A Pyruvate kinase, PK; tetramer, glycolysis, transferase; 3.05A
{Staphylococcus aureus subsp} PDB: 3t07_A*
Length = 606
Score = 24.5 bits (54), Expect = 6.2
Identities = 9/16 (56%), Positives = 10/16 (62%), Gaps = 1/16 (6%)
Query: 43 GCNILVDDGKPIEFDV 58
G IL+DDG IE V
Sbjct: 139 GSYILLDDGL-IELQV 153
>1e0t_A Pyruvate kinase, PK; phosphotransferase, glycolysis, allostery;
1.8A {Escherichia coli} SCOP: b.58.1.1 c.1.12.1 c.49.1.1
PDB: 1pky_A 1e0u_A
Length = 470
Score = 24.4 bits (54), Expect = 7.0
Identities = 8/16 (50%), Positives = 10/16 (62%), Gaps = 1/16 (6%)
Query: 43 GCNILVDDGKPIEFDV 58
G +LVDDG I +V
Sbjct: 120 GNTVLVDDGL-IGMEV 134
>3khd_A Pyruvate kinase; malaria, structural genomics, structural GE
consortium, SGC, transferase; 2.70A {Plasmodium
falciparum 3D7}
Length = 520
Score = 24.5 bits (54), Expect = 7.8
Identities = 6/16 (37%), Positives = 8/16 (50%), Gaps = 1/16 (6%)
Query: 43 GCNILVDDGKPIEFDV 58
G IL+ DG + V
Sbjct: 164 GNIILIADGS-VSCKV 178
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 72
Score = 23.6 bits (51), Expect = 8.1
Identities = 7/22 (31%), Positives = 8/22 (36%)
Query: 6 MTGLECSHRFCTQCWCEYLTTK 27
T EC H FC C +
Sbjct: 29 TTITECLHTFCKSCIVRHFYYS 50
>2e28_A Pyruvate kinase, PK; allosteric, transferase; 2.40A {Geobacillus
stearothermophilus}
Length = 587
Score = 24.1 bits (53), Expect = 8.7
Identities = 8/16 (50%), Positives = 10/16 (62%), Gaps = 1/16 (6%)
Query: 43 GCNILVDDGKPIEFDV 58
G IL+DDG I +V
Sbjct: 119 GAKILLDDGL-ISLEV 133
>3gg8_A Pyruvate kinase; malaria, genomics, proteomics, glycolysis,
magnesium, transferase, structural genomics, STRU
genomics consortium, SGC; 2.21A {Toxoplasma gondii} PDB:
3eoe_A
Length = 511
Score = 24.1 bits (53), Expect = 9.8
Identities = 6/16 (37%), Positives = 8/16 (50%), Gaps = 1/16 (6%)
Query: 43 GCNILVDDGKPIEFDV 58
G IL+ DG + V
Sbjct: 155 GNTILIADGS-LSVKV 169
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.140 0.485
Gapped
Lambda K H
0.267 0.0544 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,488,118
Number of extensions: 75013
Number of successful extensions: 334
Number of sequences better than 10.0: 1
Number of HSP's gapped: 333
Number of HSP's successfully gapped: 70
Length of query: 95
Length of database: 6,701,793
Length adjustment: 62
Effective length of query: 33
Effective length of database: 4,970,691
Effective search space: 164032803
Effective search space used: 164032803
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.8 bits)