RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7602
         (95 letters)



>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161)
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 94

 Score = 33.5 bits (76), Expect = 6e-04
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 2  PSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGC 44
             + T  +C   FCT C  +Y+    I+EG+   I+C    C
Sbjct: 17 VEQMTTIAQCQCIFCTLCLKQYVELL-IKEGLETAISCPDAAC 58


>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 114

 Score = 25.4 bits (54), Expect = 0.87
 Identities = 6/36 (16%), Positives = 9/36 (25%)

Query: 9  LECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGC 44
           +CSH F   C             +        +G 
Sbjct: 59 TKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94


>d1vm9a_ b.33.1.1 (A:) Toluene-4-monooxygenase system protein C,
          TmoC {Pseudomonas mendocina [TaxId: 300]}
          Length = 109

 Score = 25.0 bits (54), Expect = 1.2
 Identities = 9/45 (20%), Positives = 10/45 (22%), Gaps = 9/45 (20%)

Query: 11 CSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKPIE 55
          C H+                   G  I C AH        G  I 
Sbjct: 44 CPHQEILLSEGS---------YEGGVITCRAHLWTFNDGTGHGIN 79


>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine
          herpesvirus 1 [TaxId: 10326]}
          Length = 68

 Score = 23.0 bits (49), Expect = 4.8
 Identities = 6/19 (31%), Positives = 8/19 (42%)

Query: 9  LECSHRFCTQCWCEYLTTK 27
          L C H FC  C   ++   
Sbjct: 22 LPCLHAFCYVCITRWIRQN 40


>d1fqta_ b.33.1.1 (A:) Rieske-type ferredoxin associated with
          biphenyl dioxygenase {Burkholderia cepacia [TaxId:
          292]}
          Length = 109

 Score = 23.1 bits (49), Expect = 5.3
 Identities = 7/50 (14%), Positives = 13/50 (26%)

Query: 13 HRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGKPIEFDVYQGI 62
               +C     +        G  + C+ H     V  GK       + +
Sbjct: 37 FATQDRCTHGDWSLSDGGYLEGDVVECSLHMGKFCVRTGKVKSPPPCEAL 86


>d1ejxc1 b.92.1.1 (C:1002-1129,C:1423-1475) alpha-Subunit of
          urease {Klebsiella aerogenes [TaxId: 28451]}
          Length = 181

 Score = 23.2 bits (50), Expect = 5.4
 Identities = 8/22 (36%), Positives = 15/22 (68%)

Query: 27 KIIQEGMGQTIACAAHGCNILV 48
          K+I++GMGQ    AA   ++++
Sbjct: 48 KVIRDGMGQGQMLAADCVDLVL 69


>d1cb8a3 b.30.5.2 (A:336-599) Chondroitinase AC {Pedobacter
           heparinus (Flavobacterium heparinum) [TaxId: 984]}
          Length = 264

 Score = 23.3 bits (50), Expect = 6.2
 Identities = 6/27 (22%), Positives = 11/27 (40%)

Query: 43  GCNILVDDGKPIEFDVYQGILSNQVTN 69
           G  I  +  + I   + Q  L+  V +
Sbjct: 138 GAGINSNAPENITTTLNQSWLNGPVIS 164


>d1jy5a_ d.124.1.1 (A:) RNase-related protein {Hedge bindweed
          (Calystegia sepium) [TaxId: 47519]}
          Length = 207

 Score = 23.2 bits (49), Expect = 7.4
 Identities = 9/41 (21%), Positives = 13/41 (31%)

Query: 55 EFDVYQGILSNQVTNCRLASLVPCKCSWVRFPPGADFILNG 95
          EFD +   L+   T C          +  R      F + G
Sbjct: 3  EFDYFTLALTWSGTECLSVKDSCPTNACSRSEVETGFTIKG 43


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.140    0.485 

Gapped
Lambda     K      H
   0.267   0.0696    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 388,001
Number of extensions: 16041
Number of successful extensions: 85
Number of sequences better than 10.0: 1
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 27
Length of query: 95
Length of database: 2,407,596
Length adjustment: 58
Effective length of query: 37
Effective length of database: 1,611,256
Effective search space: 59616472
Effective search space used: 59616472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (21.9 bits)