BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy7603
         (130 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2XLC|A Chain A, Acetyl Xylan Esterase From Bacillus Pumilus Cect5072 Bound
           To Paraoxon
 pdb|2XLC|B Chain B, Acetyl Xylan Esterase From Bacillus Pumilus Cect5072 Bound
           To Paraoxon
 pdb|2XLC|C Chain C, Acetyl Xylan Esterase From Bacillus Pumilus Cect5072 Bound
           To Paraoxon
 pdb|2XLC|D Chain D, Acetyl Xylan Esterase From Bacillus Pumilus Cect5072 Bound
           To Paraoxon
 pdb|2XLC|E Chain E, Acetyl Xylan Esterase From Bacillus Pumilus Cect5072 Bound
           To Paraoxon
 pdb|2XLC|F Chain F, Acetyl Xylan Esterase From Bacillus Pumilus Cect5072 Bound
           To Paraoxon
          Length = 320

 Score = 28.5 bits (62), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 9/76 (11%)

Query: 25  MEVENQNPKDRQNDVEEFVFEVLSTEEIV-------QHMIDCIKEVNNVVEIPATTTRIL 77
           +E+ +   ++   +VEE  FE LS  +++       Q  +  I  ++ V   P +T    
Sbjct: 223 LEINSYFRRNSDPEVEEKAFETLSYFDLINLAGWVKQPTLXAIGLIDQVT--PPSTVFAA 280

Query: 78  LNHFKWDKEKLMERYY 93
            NH + DKE  + RY+
Sbjct: 281 YNHLETDKELKVYRYF 296


>pdb|2XLB|A Chain A, Acetyl Xylan Esterase From Bacillus Pumilus Without
           Ligands
 pdb|2XLB|B Chain B, Acetyl Xylan Esterase From Bacillus Pumilus Without
           Ligands
 pdb|2XLB|C Chain C, Acetyl Xylan Esterase From Bacillus Pumilus Without
           Ligands
 pdb|2XLB|D Chain D, Acetyl Xylan Esterase From Bacillus Pumilus Without
           Ligands
 pdb|2XLB|E Chain E, Acetyl Xylan Esterase From Bacillus Pumilus Without
           Ligands
 pdb|2XLB|F Chain F, Acetyl Xylan Esterase From Bacillus Pumilus Without
           Ligands
 pdb|2XLB|G Chain G, Acetyl Xylan Esterase From Bacillus Pumilus Without
           Ligands
 pdb|2XLB|H Chain H, Acetyl Xylan Esterase From Bacillus Pumilus Without
           Ligands
 pdb|2XLB|I Chain I, Acetyl Xylan Esterase From Bacillus Pumilus Without
           Ligands
 pdb|2XLB|J Chain J, Acetyl Xylan Esterase From Bacillus Pumilus Without
           Ligands
 pdb|2XLB|K Chain K, Acetyl Xylan Esterase From Bacillus Pumilus Without
           Ligands
 pdb|2XLB|L Chain L, Acetyl Xylan Esterase From Bacillus Pumilus Without
           Ligands
          Length = 320

 Score = 27.7 bits (60), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 9/76 (11%)

Query: 25  MEVENQNPKDRQNDVEEFVFEVLSTEEIV-------QHMIDCIKEVNNVVEIPATTTRIL 77
           +E+ +   ++   +VEE  FE LS  +++       Q  +  I  ++ V   P +T    
Sbjct: 223 LEINSYFRRNSDPEVEEKAFETLSYFDLINLAGWVKQPTLMAIGLIDQVT--PPSTVFAA 280

Query: 78  LNHFKWDKEKLMERYY 93
            NH + DKE  + RY+
Sbjct: 281 YNHLETDKELKVYRYF 296


>pdb|3IF8|B Chain B, Crystal Structure Of Zwilch, A Member Of The Rzz
           Kinetochore
          Length = 257

 Score = 25.4 bits (54), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 10/45 (22%), Positives = 26/45 (57%)

Query: 38  DVEEFVFEVLSTEEIVQHMIDCIKEVNNVVEIPATTTRILLNHFK 82
           D++E V+ V     I++ ++ C+  + +  E+  + T+I + ++K
Sbjct: 122 DIQEQVYRVQKLHHILEILVSCMPFIKSQHELLFSLTQICIKYYK 166


>pdb|3FVR|A Chain A, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
           Pumilus, Monoclinic Crystal Form I
 pdb|3FVR|B Chain B, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
           Pumilus, Monoclinic Crystal Form I
 pdb|3FVR|C Chain C, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
           Pumilus, Monoclinic Crystal Form I
 pdb|3FVR|D Chain D, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
           Pumilus, Monoclinic Crystal Form I
 pdb|3FVR|E Chain E, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
           Pumilus, Monoclinic Crystal Form I
 pdb|3FVR|F Chain F, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
           Pumilus, Monoclinic Crystal Form I
 pdb|3FVR|G Chain G, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
           Pumilus, Monoclinic Crystal Form I
 pdb|3FVR|H Chain H, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
           Pumilus, Monoclinic Crystal Form I
 pdb|3FVR|I Chain I, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
           Pumilus, Monoclinic Crystal Form I
 pdb|3FVR|L Chain L, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
           Pumilus, Monoclinic Crystal Form I
 pdb|3FVR|M Chain M, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
           Pumilus, Monoclinic Crystal Form I
 pdb|3FVR|N Chain N, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
           Pumilus, Monoclinic Crystal Form I
 pdb|3FVT|A Chain A, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
           Pumilus, Monoclinic Crystal Form Ii
 pdb|3FVT|B Chain B, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
           Pumilus, Monoclinic Crystal Form Ii
 pdb|3FVT|C Chain C, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
           Pumilus, Monoclinic Crystal Form Ii
 pdb|3FVT|D Chain D, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
           Pumilus, Monoclinic Crystal Form Ii
 pdb|3FVT|E Chain E, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
           Pumilus, Monoclinic Crystal Form Ii
 pdb|3FVT|F Chain F, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
           Pumilus, Monoclinic Crystal Form Ii
 pdb|3FVT|G Chain G, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
           Pumilus, Monoclinic Crystal Form Ii
 pdb|3FVT|H Chain H, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
           Pumilus, Monoclinic Crystal Form Ii
 pdb|3FVT|I Chain I, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
           Pumilus, Monoclinic Crystal Form Ii
 pdb|3FVT|L Chain L, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
           Pumilus, Monoclinic Crystal Form Ii
 pdb|3FVT|M Chain M, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
           Pumilus, Monoclinic Crystal Form Ii
 pdb|3FVT|N Chain N, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
           Pumilus, Monoclinic Crystal Form Ii
 pdb|3FYU|C Chain C, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
           Pumilus Obtained In Presence Of D-Xylose And Sodium
           Acetate
 pdb|3FYU|E Chain E, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
           Pumilus Obtained In Presence Of D-Xylose And Sodium
           Acetate
 pdb|3FYU|F Chain F, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
           Pumilus Obtained In Presence Of D-Xylose And Sodium
           Acetate
 pdb|3FYU|G Chain G, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
           Pumilus Obtained In Presence Of D-Xylose And Sodium
           Acetate
 pdb|3FYU|L Chain L, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
           Pumilus Obtained In Presence Of D-Xylose And Sodium
           Acetate
 pdb|3FYU|M Chain M, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
           Pumilus Obtained In Presence Of D-Xylose And Sodium
           Acetate
 pdb|3FYU|N Chain N, Crystal Structure Of Acetyl Xylan Esterase From Bacillus
           Pumilus Obtained In Presence Of D-Xylose And Sodium
           Acetate
          Length = 320

 Score = 25.4 bits (54), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 9/76 (11%)

Query: 25  MEVENQNPKDRQNDVEEFVFEVLSTEEIV-------QHMIDCIKEVNNVVEIPATTTRIL 77
           +E+ +   ++    VEE  FE LS  +++       Q  +  I  ++ +   P +T    
Sbjct: 223 LEINSYFRRNSDPKVEEKAFETLSYFDLINLAGWVKQPTLMAIGLIDKIT--PPSTVFAA 280

Query: 78  LNHFKWDKEKLMERYY 93
            NH + DK+  + RY+
Sbjct: 281 YNHLETDKDLKVYRYF 296


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.313    0.133    0.384 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,746,401
Number of Sequences: 62578
Number of extensions: 130097
Number of successful extensions: 227
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 226
Number of HSP's gapped (non-prelim): 16
length of query: 130
length of database: 14,973,337
effective HSP length: 88
effective length of query: 42
effective length of database: 9,466,473
effective search space: 397591866
effective search space used: 397591866
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)