Query psy7603
Match_columns 130
No_of_seqs 103 out of 340
Neff 5.7
Searched_HMMs 29240
Date Fri Aug 16 22:36:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7603.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7603hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v92_A NSFL1 cofactor P47; 3-h 97.7 8.7E-05 3E-09 43.8 5.0 41 56-97 5-45 (46)
2 2dal_A Protein KIAA0794; FAS a 97.4 0.00026 8.7E-09 44.9 5.2 42 55-97 14-55 (62)
3 2dzl_A Protein FAM100B; UBA-li 97.0 0.0015 5.2E-08 41.9 5.2 39 58-97 19-57 (66)
4 2dam_A ETEA protein; KIAA0887, 96.9 0.0016 5.6E-08 41.8 5.1 41 56-97 18-59 (67)
5 3e21_A HFAF1, FAS-associated f 96.3 0.0031 1.1E-07 37.7 3.1 39 56-94 5-44 (45)
6 1z96_A DNA-damage, UBA-domain 95.7 0.028 9.5E-07 31.6 5.1 36 57-93 5-40 (40)
7 1wj7_A Hypothetical protein (R 95.5 0.025 8.4E-07 39.5 5.2 39 56-94 39-77 (104)
8 2di0_A Activating signal coint 94.9 0.08 2.7E-06 34.5 6.0 40 55-94 12-52 (71)
9 3bq3_A Defective in cullin ned 94.4 0.035 1.2E-06 44.3 4.1 44 55-99 14-57 (270)
10 1oai_A Nuclear RNA export fact 93.9 0.23 7.7E-06 30.9 6.2 40 55-94 6-45 (59)
11 2g3q_A Protein YBL047C; endocy 93.1 0.23 7.8E-06 28.4 5.0 36 58-94 6-41 (43)
12 1vg5_A RSGI RUH-014, rhomboid 93.1 0.16 5.6E-06 33.0 4.8 36 58-94 31-66 (73)
13 1ify_A HHR23A, UV excision rep 93.0 0.24 8.3E-06 29.4 5.2 37 57-94 9-45 (49)
14 1veg_A NEDD8 ultimate buster-1 92.7 0.12 4.2E-06 34.5 3.9 40 59-100 32-71 (83)
15 2dak_A Ubiquitin carboxyl-term 92.1 0.15 5.2E-06 31.8 3.5 39 58-98 11-49 (63)
16 2jp7_A MRNA export factor MEX6 90.9 0.64 2.2E-05 28.7 5.5 41 54-94 4-44 (57)
17 2jy5_A Ubiquilin-1; UBA, alter 90.1 0.66 2.3E-05 27.8 4.9 38 58-97 14-52 (52)
18 2knz_A Ubiquilin-4; cytoplasm, 89.9 0.85 2.9E-05 27.4 5.3 39 55-94 10-49 (53)
19 1wji_A Tudor domain containing 89.0 0.87 3E-05 28.4 5.0 36 58-94 11-46 (63)
20 1wiv_A UBP14, ubiquitin-specif 88.4 0.84 2.9E-05 29.3 4.8 34 60-94 33-66 (73)
21 1dv0_A DNA repair protein HHR2 88.4 0.44 1.5E-05 28.1 3.1 36 58-94 6-41 (47)
22 2dkl_A Trinucleotide repeat co 87.5 1.2 4.2E-05 29.5 5.2 37 57-94 22-58 (85)
23 2cpw_A CBL-interacting protein 87.4 1.2 4.1E-05 27.8 4.9 35 59-94 22-57 (64)
24 2dai_A Ubadc1, ubiquitin assoc 86.1 1.5 5.2E-05 28.9 5.1 35 59-94 32-66 (83)
25 1wr1_B Ubiquitin-like protein 85.4 1.7 6E-05 26.7 4.8 39 55-94 16-55 (58)
26 2dah_A Ubiquilin-3; UBA domain 85.2 0.72 2.5E-05 28.0 2.9 36 58-94 11-47 (54)
27 4ddj_A Saposin-A, protein A; s 85.1 1.8 6.2E-05 27.4 5.0 56 53-109 26-83 (83)
28 4gew_A 5'-tyrosyl-DNA phosphod 84.9 1.8 6E-05 34.7 6.0 36 59-94 48-83 (362)
29 3k9o_A Ubiquitin-conjugating e 84.8 1.9 6.4E-05 32.2 5.7 37 57-94 164-200 (201)
30 3e46_A Ubiquitin-conjugating e 84.6 1.8 6.1E-05 33.9 5.7 37 57-94 216-252 (253)
31 1ufz_A Hypothetical protein BA 83.5 3.4 0.00012 27.5 5.8 47 47-94 26-74 (83)
32 2ekk_A UBA domain from E3 ubiq 81.6 3.4 0.00012 23.8 4.8 34 59-94 12-45 (47)
33 1vek_A UBP14, ubiquitin-specif 81.2 2.1 7.3E-05 28.1 4.2 35 59-94 32-67 (84)
34 2dag_A Ubiquitin carboxyl-term 80.9 2.3 7.9E-05 27.2 4.2 36 58-94 11-47 (74)
35 2bwb_A Ubiquitin-like protein 80.8 4.3 0.00015 23.6 5.0 38 56-94 7-45 (46)
36 1vej_A Riken cDNA 4931431F19; 80.1 4.2 0.00014 26.3 5.3 36 58-94 31-67 (74)
37 1whc_A RSGI RUH-027, UBA/UBX 3 77.7 2.8 9.5E-05 26.0 3.7 35 59-94 12-47 (64)
38 2lbc_A Ubiquitin carboxyl-term 76.4 4.3 0.00015 28.0 4.8 36 58-94 80-115 (126)
39 1otk_A Protein PAAC, phenylace 69.5 16 0.00055 28.5 7.1 62 50-112 150-215 (249)
40 2l2d_A OTU domain-containing p 64.9 19 0.00064 23.0 5.4 38 55-92 16-53 (73)
41 1wgl_A TOLL-interacting protei 64.8 14 0.00048 22.6 4.8 38 57-94 10-48 (59)
42 1tc3_C Protein (TC3 transposas 64.7 6.3 0.00022 21.0 2.9 24 59-82 23-46 (51)
43 2crn_A Ubash3A protein; compac 64.3 12 0.00041 23.2 4.4 35 59-94 12-47 (64)
44 3q8i_A Odorant binding protein 63.2 29 0.001 22.8 7.1 61 47-112 1-63 (124)
45 1jkg_B TAP; NTF2-like domain, 59.9 1.9 6.4E-05 33.4 0.0 41 54-94 196-236 (250)
46 1z67_A Hypothetical protein S4 59.1 9.9 0.00034 27.2 3.7 38 44-81 61-99 (135)
47 2cp8_A NEXT to BRCA1 gene 1 pr 58.6 23 0.00079 21.5 4.8 35 60-94 13-47 (54)
48 2a1j_A DNA repair endonuclease 58.5 6.1 0.00021 24.1 2.2 28 61-89 4-31 (63)
49 2gtg_A Proactivator polypeptid 57.9 8.3 0.00029 24.1 2.9 53 55-109 29-82 (83)
50 2cp9_A EF-TS, EF-TSMT, elongat 56.9 18 0.00061 22.7 4.3 37 58-94 11-47 (64)
51 2cwb_A Chimera of immunoglobul 55.7 20 0.00067 24.7 4.7 37 57-94 67-104 (108)
52 1ooh_A Odorant binding protein 54.8 39 0.0013 21.9 6.1 59 47-110 3-63 (126)
53 2qyp_A Proactivator polypeptid 54.7 8 0.00027 24.8 2.5 57 52-110 27-84 (91)
54 2qsf_X RAD23, UV excision repa 54.2 26 0.00087 26.0 5.4 46 43-94 122-167 (171)
55 1nkl_A NK-lysin; saposin fold, 53.9 37 0.0013 21.1 7.1 51 56-109 27-78 (78)
56 2jt1_A PEFI protein; solution 53.3 27 0.00093 22.1 4.8 30 49-78 6-45 (77)
57 1z00_A DNA excision repair pro 51.8 39 0.0013 21.3 5.5 51 53-108 11-61 (89)
58 1gyx_A YDCE, B1461, hypothetic 51.1 0.73 2.5E-05 28.9 -3.1 57 47-105 12-71 (76)
59 1n69_A Saposin B; lipid bindin 49.0 21 0.00072 22.3 3.7 52 54-108 28-80 (81)
60 1z00_B DNA repair endonuclease 48.2 19 0.00065 23.4 3.5 23 60-82 17-39 (84)
61 2a1j_B DNA excision repair pro 47.8 34 0.0012 21.8 4.7 51 54-109 25-75 (91)
62 1tr8_A Conserved protein (MTH1 46.1 27 0.00091 23.7 4.1 29 58-86 67-95 (102)
63 3e7l_A Transcriptional regulat 45.9 23 0.0008 21.0 3.4 25 60-84 35-59 (63)
64 1xb2_B EF-TS, elongation facto 44.0 41 0.0014 26.7 5.5 69 57-126 5-77 (291)
65 3bqp_A Proactivator polypeptid 43.3 53 0.0018 19.8 6.7 51 55-108 27-79 (80)
66 1of9_A Pore-forming peptide am 42.0 60 0.0021 20.1 5.9 49 55-106 26-76 (77)
67 2js9_A Saposin-like protein fa 41.6 47 0.0016 22.0 4.8 54 48-108 41-99 (99)
68 1xn7_A Hypothetical protein YH 40.6 41 0.0014 21.3 4.1 32 48-79 3-38 (78)
69 2pwq_A Ubiquitin conjugating e 40.1 6 0.00021 30.1 0.0 36 58-94 179-214 (216)
70 3r72_A Odorant binding protein 39.5 70 0.0024 20.8 5.4 59 47-111 3-61 (122)
71 3qkx_A Uncharacterized HTH-typ 39.4 34 0.0012 22.6 3.9 31 60-94 31-61 (188)
72 1umq_A Photosynthetic apparatu 38.2 37 0.0013 21.8 3.7 24 59-82 56-79 (81)
73 3q8g_A CRAL-TRIO domain-contai 37.8 81 0.0028 24.6 6.3 46 47-92 35-82 (320)
74 3jsj_A Putative TETR-family tr 37.7 38 0.0013 22.7 3.9 32 59-94 30-61 (190)
75 3loc_A HTH-type transcriptiona 37.1 39 0.0013 22.9 3.9 32 59-94 40-71 (212)
76 2eh3_A Transcriptional regulat 36.7 39 0.0013 22.6 3.9 32 59-94 24-55 (179)
77 3e7q_A Transcriptional regulat 36.2 40 0.0014 22.8 3.9 32 59-94 36-67 (215)
78 3knw_A Putative transcriptiona 36.1 40 0.0014 22.8 3.9 31 60-94 37-67 (212)
79 3m21_A Probable tautomerase HP 36.1 28 0.00096 20.6 2.7 35 46-80 13-47 (67)
80 3ni7_A Bacterial regulatory pr 35.5 41 0.0014 23.9 3.9 31 60-94 30-60 (213)
81 3nxc_A HTH-type protein SLMA; 35.2 38 0.0013 23.0 3.6 33 58-94 46-78 (212)
82 2p7v_B Sigma-70, RNA polymeras 35.1 33 0.0011 20.1 2.9 21 59-79 27-47 (68)
83 3bjb_A Probable transcriptiona 34.9 42 0.0014 23.3 3.9 32 59-94 44-75 (207)
84 1g2h_A Transcriptional regulat 34.7 31 0.001 20.4 2.7 34 50-83 24-59 (61)
85 3lwj_A Putative TETR-family tr 34.7 45 0.0015 22.5 3.9 32 59-94 34-65 (202)
86 2wui_A MEXZ, transcriptional r 34.3 44 0.0015 23.1 3.9 32 59-94 33-64 (210)
87 2dhy_A CUE domain-containing p 34.0 79 0.0027 19.7 4.6 36 59-94 21-57 (67)
88 3bqz_B HTH-type transcriptiona 34.0 47 0.0016 22.1 3.9 32 59-94 24-55 (194)
89 4fxe_A Antitoxin RELB; toxin/a 33.5 48 0.0016 21.2 3.6 27 54-80 10-36 (79)
90 2gen_A Probable transcriptiona 33.5 47 0.0016 22.7 3.9 32 59-94 29-60 (197)
91 1ixr_A Holliday junction DNA h 33.4 59 0.002 24.0 4.6 45 62-108 73-117 (191)
92 3qbm_A TETR transcriptional re 33.3 42 0.0014 22.4 3.5 31 60-94 30-60 (199)
93 2o8x_A Probable RNA polymerase 33.1 38 0.0013 19.5 2.9 22 59-80 33-54 (70)
94 3ry0_A Putative tautomerase; o 33.1 35 0.0012 20.0 2.8 33 47-79 11-43 (65)
95 1aip_C EF-TS, elongation facto 33.0 1.1E+02 0.0039 22.9 6.1 62 57-118 4-65 (196)
96 3q0w_A HTH-type transcriptiona 32.9 46 0.0016 23.5 3.9 31 60-94 67-97 (236)
97 1aua_A Phosphatidylinositol tr 32.8 1.2E+02 0.004 22.9 6.4 25 68-92 49-73 (296)
98 3g7r_A Putative transcriptiona 32.7 47 0.0016 23.2 3.9 32 59-94 57-88 (221)
99 1otf_A 4-oxalocrotonate tautom 32.6 37 0.0013 19.2 2.8 30 47-76 11-40 (62)
100 3hta_A EBRA repressor; TETR fa 32.6 47 0.0016 23.2 3.9 31 60-94 51-81 (217)
101 3ppb_A Putative TETR family tr 32.5 51 0.0017 21.8 3.9 31 60-94 32-62 (195)
102 3vib_A MTRR; helix-turn-helix 32.4 50 0.0017 22.7 3.9 32 59-94 32-63 (210)
103 3v6g_A Probable transcriptiona 32.3 49 0.0017 23.2 3.9 31 60-94 37-67 (208)
104 3v2l_A AGAP005208-PA; odorant 31.9 1E+02 0.0035 19.7 5.8 56 47-107 1-56 (120)
105 3hug_A RNA polymerase sigma fa 31.9 38 0.0013 21.1 2.9 22 59-80 55-76 (92)
106 2nxo_A Hypothetical protein SC 31.9 86 0.0029 23.4 5.4 48 60-112 226-277 (291)
107 3crj_A Transcription regulator 31.7 45 0.0015 22.9 3.6 32 59-94 36-67 (199)
108 3dcf_A Transcriptional regulat 31.1 54 0.0019 22.2 3.9 31 60-94 54-84 (218)
109 2nx4_A Transcriptional regulat 30.9 55 0.0019 22.3 3.9 32 59-94 32-63 (194)
110 3egq_A TETR family transcripti 30.9 58 0.002 21.4 3.9 32 59-94 26-57 (170)
111 3on4_A Transcriptional regulat 30.7 57 0.002 21.5 3.9 32 59-94 32-63 (191)
112 3mb2_A 4-oxalocrotonate tautom 30.6 40 0.0014 20.3 2.8 34 47-80 12-45 (72)
113 2opa_A Probable tautomerase YW 30.5 43 0.0015 18.9 2.8 31 47-77 11-41 (61)
114 3abf_A 4-oxalocrotonate tautom 30.4 43 0.0015 19.2 2.8 30 47-76 12-41 (64)
115 3he0_A Transcriptional regulat 30.4 51 0.0017 22.0 3.6 32 59-94 33-64 (196)
116 3m20_A 4-oxalocrotonate tautom 30.3 45 0.0015 19.5 2.9 34 46-79 9-42 (62)
117 3eup_A Transcriptional regulat 30.3 40 0.0014 22.6 3.0 32 59-94 33-64 (204)
118 3g1o_A Transcriptional regulat 29.9 55 0.0019 23.4 3.9 31 60-94 66-96 (255)
119 1jko_C HIN recombinase, DNA-in 29.9 31 0.0011 18.3 2.0 24 59-82 23-46 (52)
120 2x4k_A 4-oxalocrotonate tautom 29.8 44 0.0015 18.7 2.8 29 47-75 14-42 (63)
121 2pjp_A Selenocysteine-specific 29.6 35 0.0012 22.8 2.6 22 60-81 83-104 (121)
122 4ac0_A Tetracycline repressor 29.5 50 0.0017 23.6 3.6 32 59-94 25-56 (202)
123 2i6e_A Hypothetical protein; N 29.3 1.3E+02 0.0044 23.0 6.1 49 56-110 234-286 (301)
124 3vp5_A Transcriptional regulat 29.1 61 0.0021 22.1 3.9 31 60-94 35-65 (189)
125 1rkt_A Protein YFIR; transcrip 29.0 55 0.0019 22.4 3.6 31 60-94 35-65 (205)
126 2qib_A TETR-family transcripti 28.9 60 0.002 22.9 3.9 32 59-94 35-66 (231)
127 1wgn_A UBAP1, ubiquitin associ 28.6 1E+02 0.0035 19.2 4.3 47 45-97 13-60 (63)
128 2htj_A P fimbrial regulatory p 28.6 48 0.0017 20.2 2.9 21 59-79 16-36 (81)
129 2ibd_A Possible transcriptiona 28.5 67 0.0023 21.9 4.0 32 59-94 36-67 (204)
130 4aci_A HTH-type transcriptiona 28.3 54 0.0018 21.9 3.4 32 59-94 36-67 (191)
131 1eto_A FIS, factor for inversi 27.9 53 0.0018 21.6 3.2 25 59-83 73-97 (98)
132 1tty_A Sigma-A, RNA polymerase 27.3 51 0.0017 20.4 2.9 21 59-79 40-60 (87)
133 3frq_A Repressor protein MPHR( 27.3 58 0.002 21.9 3.4 32 59-94 30-61 (195)
134 3dpj_A Transcription regulator 27.3 70 0.0024 21.3 3.9 32 59-94 30-61 (194)
135 3b81_A Transcriptional regulat 27.2 61 0.0021 21.7 3.5 32 59-94 33-64 (203)
136 3kkc_A TETR family transcripti 27.0 47 0.0016 21.9 2.9 31 60-94 35-65 (177)
137 1ku3_A Sigma factor SIGA; heli 27.0 54 0.0019 19.4 2.9 21 59-79 32-52 (73)
138 3rd3_A Probable transcriptiona 27.0 51 0.0017 21.9 3.1 32 59-94 32-63 (197)
139 1u9d_A Hypothetical protein VC 27.0 44 0.0015 23.2 2.7 41 40-80 17-57 (122)
140 1ui5_A A-factor receptor homol 26.8 69 0.0023 22.3 3.9 32 59-94 31-62 (215)
141 3npi_A TETR family regulatory 26.8 57 0.0019 23.2 3.5 32 59-94 40-71 (251)
142 3bqy_A Putative TETR family tr 26.7 69 0.0023 22.7 3.9 32 59-94 24-55 (209)
143 2cob_A LCOR protein; MLR2, KIA 26.6 84 0.0029 19.9 3.8 39 37-75 4-48 (70)
144 3cdl_A Transcriptional regulat 26.6 64 0.0022 22.0 3.6 32 59-94 31-62 (203)
145 2opt_A Actii protein; helical 26.3 57 0.002 23.9 3.4 31 60-94 29-59 (234)
146 2id6_A Transcriptional regulat 26.2 48 0.0016 22.7 2.9 33 58-94 26-58 (202)
147 1olm_A SEC14-like protein 2; l 26.2 1.6E+02 0.0056 23.2 6.4 37 68-106 32-68 (403)
148 2dg8_A Putative TETR-family tr 26.0 61 0.0021 21.9 3.4 32 59-94 31-62 (193)
149 1r5l_A Alpha-TTP, protein (alp 25.9 48 0.0016 24.4 3.0 25 68-92 30-54 (262)
150 2k02_A Ferrous iron transport 25.8 56 0.0019 21.3 3.0 31 49-79 4-38 (87)
151 1z4h_A TORI, TOR inhibition pr 25.6 62 0.0021 19.2 3.0 20 60-79 13-32 (66)
152 2lfw_A PHYR sigma-like domain; 25.6 53 0.0018 22.4 3.0 22 59-80 111-132 (157)
153 2y2z_A SIM16, SIMR, putative r 25.4 62 0.0021 24.2 3.6 45 46-94 26-80 (267)
154 3pxi_A Negative regulator of g 25.4 2.1E+02 0.0072 24.6 7.3 74 40-114 655-741 (758)
155 4fm4_A NitrIle hydratase alpha 25.4 28 0.00096 26.7 1.6 40 65-114 110-149 (209)
156 2np5_A Transcriptional regulat 25.3 78 0.0027 21.7 3.9 32 59-94 31-62 (203)
157 1cuk_A RUVA protein; DNA repai 25.3 1.1E+02 0.0037 22.7 4.8 45 62-108 74-118 (203)
158 2g7g_A RHA04620, putative tran 25.0 53 0.0018 23.3 3.0 45 46-94 10-62 (213)
159 2oi8_A Putative regulatory pro 24.9 69 0.0024 22.6 3.6 32 59-94 38-69 (216)
160 2hyt_A TETR-family transcripti 24.8 43 0.0015 22.9 2.4 31 60-94 35-65 (197)
161 1oqy_A HHR23A, UV excision rep 24.6 31 0.0011 28.2 1.8 45 44-94 318-362 (368)
162 1y6u_A XIS, excisionase from t 23.9 69 0.0024 19.8 3.0 22 60-81 19-40 (70)
163 2w53_A Repressor, SMet; antibi 23.8 75 0.0026 21.9 3.6 32 59-94 33-64 (219)
164 2jpc_A SSRB; DNA binding prote 23.8 68 0.0023 18.0 2.8 20 60-79 16-35 (61)
165 1z0x_A Transcriptional regulat 23.8 73 0.0025 22.6 3.6 32 59-94 28-59 (220)
166 2x48_A CAG38821; archeal virus 23.7 58 0.002 18.0 2.5 21 59-79 33-53 (55)
167 1x2i_A HEF helicase/nuclease; 23.7 70 0.0024 18.9 3.0 44 60-108 13-56 (75)
168 3fiw_A Putative TETR-family tr 23.5 60 0.0021 23.1 3.0 46 45-94 23-78 (211)
169 2g3b_A Putative TETR-family tr 23.5 74 0.0025 22.0 3.5 33 58-94 24-56 (208)
170 3ej9_A Alpha-subunit of trans- 23.4 64 0.0022 19.8 2.8 34 47-80 12-45 (76)
171 2nrt_A Uvrabc system protein C 22.5 99 0.0034 23.5 4.2 28 61-89 168-195 (220)
172 3s5r_A Transcriptional regulat 22.4 98 0.0033 20.9 3.9 32 59-94 32-63 (216)
173 1kft_A UVRC, excinuclease ABC 22.4 36 0.0012 20.9 1.4 43 62-109 25-67 (78)
174 2guh_A Putative TETR-family tr 22.3 86 0.003 21.9 3.7 35 60-99 62-96 (214)
175 1upt_B Golgi autoantigen, golg 22.3 1.1E+02 0.0039 18.8 3.7 24 57-80 24-47 (60)
176 3m4a_A Putative type I topoiso 22.2 92 0.0031 25.4 4.2 42 48-94 259-300 (346)
177 3mzy_A RNA polymerase sigma-H 22.2 68 0.0023 21.0 2.9 21 60-80 127-147 (164)
178 2oer_A Probable transcriptiona 21.9 98 0.0034 21.3 3.9 32 59-94 46-77 (214)
179 2jn6_A Protein CGL2762, transp 21.8 68 0.0023 20.0 2.7 25 59-83 25-49 (97)
180 3lhq_A Acrab operon repressor 21.7 1E+02 0.0035 20.6 3.9 31 60-94 37-67 (220)
181 2kfs_A Conserved hypothetical 21.7 64 0.0022 23.3 2.8 23 60-82 34-56 (148)
182 3vpr_A Transcriptional regulat 21.7 84 0.0029 21.0 3.4 27 59-89 25-51 (190)
183 4hku_A LMO2814 protein, TETR t 21.7 40 0.0014 22.8 1.7 31 60-94 30-60 (178)
184 2gfn_A HTH-type transcriptiona 21.6 1E+02 0.0035 21.3 3.9 32 59-94 31-62 (209)
185 2d6y_A Putative TETR family re 21.5 84 0.0029 21.5 3.4 32 59-94 30-61 (202)
186 1fse_A GERE; helix-turn-helix 21.5 83 0.0028 18.1 2.9 21 59-79 28-48 (74)
187 2zb9_A Putative transcriptiona 21.3 1E+02 0.0036 20.9 3.9 32 59-94 45-76 (214)
188 3geu_A Intercellular adhesion 21.3 75 0.0026 21.1 3.1 32 59-94 25-56 (189)
189 3ccy_A Putative TETR-family tr 21.3 37 0.0013 23.2 1.4 32 59-94 36-67 (203)
190 1vi0_A Transcriptional regulat 21.1 1.1E+02 0.0036 21.1 3.9 32 59-94 30-61 (206)
191 3t72_q RNA polymerase sigma fa 21.0 73 0.0025 20.9 2.8 23 58-80 40-62 (99)
192 2duy_A Competence protein come 20.9 70 0.0024 19.4 2.6 37 61-108 27-63 (75)
193 1zk8_A Transcriptional regulat 20.9 78 0.0027 20.9 3.0 32 59-94 30-61 (183)
194 3dew_A Transcriptional regulat 20.9 86 0.0029 20.8 3.3 31 60-94 31-61 (206)
195 2fq4_A Transcriptional regulat 20.7 1.2E+02 0.0041 20.4 4.1 32 59-94 34-65 (192)
196 1or7_A Sigma-24, RNA polymeras 20.7 75 0.0026 21.7 3.0 22 59-80 158-179 (194)
197 1pdn_C Protein (PRD paired); p 20.6 52 0.0018 20.8 2.0 23 59-81 35-57 (128)
198 2pz9_A Putative regulatory pro 20.6 1.1E+02 0.0038 21.3 3.9 32 59-94 52-83 (226)
199 1ufm_A COP9 complex subunit 4; 20.5 72 0.0025 20.4 2.6 21 60-80 33-53 (84)
No 1
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=97.66 E-value=8.7e-05 Score=43.75 Aligned_cols=41 Identities=22% Similarity=0.457 Sum_probs=37.6
Q ss_pred HHHHHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhcCCh
Q psy7603 56 MIDCIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYDGDQ 97 (130)
Q Consensus 56 ~~e~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e~D~ 97 (130)
+.+.|.+-++|+++++..|+-+|..++||.+.-+..||+ +|
T Consensus 5 ~~~~i~~F~~iTg~~~~~A~~~L~~~~wdle~Ai~~ff~-~~ 45 (46)
T 1v92_A 5 RQDALREFVAVTGAEEDRARFFLESAGWDLQIALASFYE-DG 45 (46)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHTTSCSHHHHHHHHH-TC
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHHHHHc-CC
Confidence 456799999999999999999999999999999999998 54
No 2
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.43 E-value=0.00026 Score=44.86 Aligned_cols=42 Identities=10% Similarity=0.182 Sum_probs=38.6
Q ss_pred HHHHHHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhcCCh
Q psy7603 55 HMIDCIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYDGDQ 97 (130)
Q Consensus 55 ~~~e~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e~D~ 97 (130)
.|++.|.+-+.|++.++..|+.+|..++||.+.-+..||+ ++
T Consensus 14 ~~~e~i~qF~~iTg~~~~~A~~~Le~~~WnLe~Av~~ff~-~~ 55 (62)
T 2dal_A 14 ALKGLIQQFTTITGASESVGKHMLEACNNNLEMAVTMFLD-GG 55 (62)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHTTTSCHHHHHHHHHH-SC
T ss_pred cHHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHc-CC
Confidence 4567799999999999999999999999999999999999 54
No 3
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.96 E-value=0.0015 Score=41.89 Aligned_cols=39 Identities=15% Similarity=0.319 Sum_probs=36.2
Q ss_pred HHHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhcCCh
Q psy7603 58 DCIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYDGDQ 97 (130)
Q Consensus 58 e~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e~D~ 97 (130)
+.|.+-+.|++.++..|+-.|..++||.+.-+..||+ ++
T Consensus 19 ~~i~qF~~iTg~~~~~A~~~Le~~~WdLe~Al~~ff~-~~ 57 (66)
T 2dzl_A 19 VMINQFVLAAGCAADQAKQLLQAAHWQFETALSTFFQ-ET 57 (66)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHHT-CS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHc-CC
Confidence 4688899999999999999999999999999999999 53
No 4
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.91 E-value=0.0016 Score=41.78 Aligned_cols=41 Identities=12% Similarity=0.281 Sum_probs=37.4
Q ss_pred HHHHHHHHhhhhC-CCHHHHHHHHHhCCCChHHHHHHHhcCCh
Q psy7603 56 MIDCIKEVNNVVE-IPATTTRILLNHFKWDKEKLMERYYDGDQ 97 (130)
Q Consensus 56 ~~e~I~~V~~iL~-vs~~~A~lLL~~fkWn~ekLlE~y~e~D~ 97 (130)
+.+.|.+-+.|++ ..+..|+-+|..++||.+.-+..||+ +.
T Consensus 18 ~~e~i~qF~~ITg~~d~~~A~~~Le~~~WnLe~Av~~ff~-~~ 59 (67)
T 2dam_A 18 QTEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLN-EQ 59 (67)
T ss_dssp HHHHHHHHHHHHCCSCHHHHHHHHHHHTSCHHHHHHHHHH-SS
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHHh-CC
Confidence 4567999999999 89999999999999999999999999 53
No 5
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=96.30 E-value=0.0031 Score=37.75 Aligned_cols=39 Identities=13% Similarity=0.156 Sum_probs=33.0
Q ss_pred HHHHHHHHhhhhCCCH-HHHHHHHHhCCCChHHHHHHHhc
Q psy7603 56 MIDCIKEVNNVVEIPA-TTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 56 ~~e~I~~V~~iL~vs~-~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
..+.|.+-++|+|+++ ..|+..|..++||.+.-+..||-
T Consensus 5 ~de~ia~F~~iTG~~d~~~A~~~Lea~nWDLe~Av~~f~~ 44 (45)
T 3e21_A 5 REMILADFQACTGIENIDEAITLLEQNNWDLVAAINGVIP 44 (45)
T ss_dssp HHHHHHHHHHHHCCCCHHHHHHHHHHTTTCHHHHHTTC--
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHcCCcHHHHHHHHcC
Confidence 3567889999999995 99999999999999998877763
No 6
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=95.67 E-value=0.028 Score=31.56 Aligned_cols=36 Identities=8% Similarity=-0.033 Sum_probs=31.3
Q ss_pred HHHHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHh
Q psy7603 57 IDCIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYY 93 (130)
Q Consensus 57 ~e~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~ 93 (130)
.+.|+++++. |.++..|+.-|+..+||.++-++-+|
T Consensus 5 ~~~i~~L~~m-Gf~~~~a~~AL~~~~~n~e~A~~~L~ 40 (40)
T 1z96_A 5 NSKIAQLVSM-GFDPLEAAQALDAANGDLDVAASFLL 40 (40)
T ss_dssp HHHHHHHHHT-TCCHHHHHHHHHHTTTCHHHHHHHHC
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHC
Confidence 4568899987 99999999999999999998887653
No 7
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=95.49 E-value=0.025 Score=39.48 Aligned_cols=39 Identities=10% Similarity=0.159 Sum_probs=37.2
Q ss_pred HHHHHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 56 MIDCIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 56 ~~e~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
+.+.|..|++..+++...|+.-|...+||.++.++.+++
T Consensus 39 ~eekVk~L~EmtG~seeeAr~AL~~~ngDl~~AI~~Lle 77 (104)
T 1wj7_A 39 FEEKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLE 77 (104)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 367899999999999999999999999999999999999
No 8
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=94.91 E-value=0.08 Score=34.50 Aligned_cols=40 Identities=13% Similarity=0.326 Sum_probs=37.1
Q ss_pred HHHHHHHHHhhhh-CCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 55 HMIDCIKEVNNVV-EIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 55 ~~~e~I~~V~~iL-~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
.+.+.|..|.++| .+..+..+.+|.+|+=|.|+++...++
T Consensus 12 ~l~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE 52 (71)
T 2di0_A 12 ELDSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILE 52 (71)
T ss_dssp HHHHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 5677899999998 799999999999999999999999999
No 9
>3bq3_A Defective in cullin neddylation protein 1; ubiquitin, ubiquitination,SCF,cullin, E3 E2, cell cycle, protein degradation, ligase; 1.90A {Saccharomyces cerevisiae} PDB: 2is9_A* 3o2p_A 3o6b_A 3tdi_B 2l4e_A 2l4f_A
Probab=94.42 E-value=0.035 Score=44.30 Aligned_cols=44 Identities=16% Similarity=0.373 Sum_probs=39.6
Q ss_pred HHHHHHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhcCChhh
Q psy7603 55 HMIDCIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYDGDQES 99 (130)
Q Consensus 55 ~~~e~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e~D~~k 99 (130)
.+.+.|.+-+++++.++..|+..|..++||.+..+..||+ +|..
T Consensus 14 ~~~~~i~qF~~iTg~~~~~A~~~L~~~~WdLe~Al~~ff~-~~~~ 57 (270)
T 3bq3_A 14 PEQEAIESFTSLTKCDPKVSRKYLQRNHWNINYALNDYYD-KEIG 57 (270)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHHH-HHCC
T ss_pred chHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHh-Cccc
Confidence 3566799999999999999999999999999999999999 6543
No 10
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=93.87 E-value=0.23 Score=30.93 Aligned_cols=40 Identities=8% Similarity=0.186 Sum_probs=37.4
Q ss_pred HHHHHHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 55 HMIDCIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 55 ~~~e~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
.+.+.|..++...++...-+...|..-+||.++.+..|..
T Consensus 6 ~q~~mv~~~s~~Tgmn~~~s~~cL~~~~Wd~~~A~~~F~~ 45 (59)
T 1oai_A 6 EQQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQAFTH 45 (59)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 5667899999999999999999999999999999999988
No 11
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=93.12 E-value=0.23 Score=28.42 Aligned_cols=36 Identities=17% Similarity=0.302 Sum_probs=31.5
Q ss_pred HHHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 58 DCIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 58 e~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
+.|+++.+ +|.++..|+.-|+..+||.++-++-.++
T Consensus 6 ~~i~~L~~-MGF~~~~a~~AL~~~~~n~e~A~~~L~~ 41 (43)
T 2g3q_A 6 LAVEELSG-MGFTEEEAHNALEKCNWDLEAATNFLLD 41 (43)
T ss_dssp HHHHHHHT-TTSCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHhCcCHHHHHHHHHc
Confidence 55788887 5999999999999999999999887765
No 12
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=93.09 E-value=0.16 Score=32.99 Aligned_cols=36 Identities=14% Similarity=0.097 Sum_probs=31.9
Q ss_pred HHHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 58 DCIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 58 e~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
+.|+++++ ++.+...|+.-|+.++||.++.++-.+.
T Consensus 31 e~I~~L~e-MGF~r~~a~~AL~~~~~nve~Ave~Ll~ 66 (73)
T 1vg5_A 31 EQIQKLVA-MGFDRTQVEVALAAADDDLTVAVEILMS 66 (73)
T ss_dssp HHHHHHHT-TTCCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 45677777 5999999999999999999999999888
No 13
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=93.04 E-value=0.24 Score=29.40 Aligned_cols=37 Identities=8% Similarity=0.014 Sum_probs=32.1
Q ss_pred HHHHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 57 IDCIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 57 ~e~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
.+.|+++.+. |.++..|+.-|+..+||.++.++-.++
T Consensus 9 ~~~i~~L~~M-GF~~~~a~~AL~~~~~n~e~A~e~L~~ 45 (49)
T 1ify_A 9 ETMLTEIMSM-GYERERVVAALRASYNNPHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHHHT-TCCHHHHHHHHHTTTSCSHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 4557777765 999999999999999999999988877
No 14
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=92.74 E-value=0.12 Score=34.48 Aligned_cols=40 Identities=10% Similarity=0.055 Sum_probs=33.2
Q ss_pred HHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhcCChhhH
Q psy7603 59 CIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYDGDQESS 100 (130)
Q Consensus 59 ~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e~D~~kv 100 (130)
.|+++.+ +|+++..|+.-|+..+||.++.++-.|. ++.++
T Consensus 32 ~I~~Lv~-MGF~~~~A~~AL~~t~gdve~A~e~L~s-h~~~i 71 (83)
T 1veg_A 32 SINQLVY-MGFDTVVAEAALRVFGGNVQLAAQTLAH-HGGSL 71 (83)
T ss_dssp HHHHHHH-HSCCHHHHHHHHHHTTTCHHHHHHHHHH-HTSSC
T ss_pred HHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHh-CCCCC
Confidence 4566665 4999999999999999999999999998 55443
No 15
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.07 E-value=0.15 Score=31.75 Aligned_cols=39 Identities=10% Similarity=0.246 Sum_probs=33.1
Q ss_pred HHHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhcCChh
Q psy7603 58 DCIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYDGDQE 98 (130)
Q Consensus 58 e~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e~D~~ 98 (130)
+.|+++.+ +|.+...|+.-|++.+||.++.++-.+. +++
T Consensus 11 ~~v~~L~~-MGF~~~~a~~AL~~t~~nve~A~e~L~~-~~~ 49 (63)
T 2dak_A 11 DCVTTIVS-MGFSRDQALKALRATNNSLERAVDWIFS-HID 49 (63)
T ss_dssp HHHHHHHH-HTCCHHHHHHHHHHTTSCSHHHHHHHHH-HHH
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHh-CCC
Confidence 34667777 6999999999999999999999999888 443
No 16
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=90.95 E-value=0.64 Score=28.74 Aligned_cols=41 Identities=12% Similarity=0.274 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 54 QHMIDCIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 54 ~~~~e~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
..+.+.|..++...++...-+...|..-+||-++.+..|..
T Consensus 4 ~~q~~mv~~~s~~T~Mn~e~S~~cL~~n~Wd~~~A~~~F~~ 44 (57)
T 2jp7_A 4 PVQLELLNKLHLETKLNAEYTFMLAEQSNWNYEVAIKGFQS 44 (57)
T ss_dssp HHHHHHHHHHHHHHCSCHHHHHHHHHHTTTCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 35678899999999999999999999999999999999987
No 17
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=90.12 E-value=0.66 Score=27.82 Aligned_cols=38 Identities=11% Similarity=0.083 Sum_probs=31.7
Q ss_pred HHHHHHhhhhCC-CHHHHHHHHHhCCCChHHHHHHHhcCCh
Q psy7603 58 DCIKEVNNVVEI-PATTTRILLNHFKWDKEKLMERYYDGDQ 97 (130)
Q Consensus 58 e~I~~V~~iL~v-s~~~A~lLL~~fkWn~ekLlE~y~e~D~ 97 (130)
+.|+++.+. |. +...++.-|+..+||.++.++..+. +|
T Consensus 14 ~~l~~L~~M-GF~~~~~~~~AL~~t~gn~e~A~e~L~~-~~ 52 (52)
T 2jy5_A 14 QQLEQLSAM-GFLNREANLQALIATGGDINAAIERLLG-SS 52 (52)
T ss_dssp HHHHHHHHT-TCCCHHHHHHHHHHHTTCHHHHHHHHTT-CC
T ss_pred HHHHHHHHc-CCCCHHHHHHHHHHhCCCHHHHHHHHHh-Cc
Confidence 456777764 88 8999999999999999999998887 53
No 18
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=89.92 E-value=0.85 Score=27.40 Aligned_cols=39 Identities=13% Similarity=0.112 Sum_probs=33.2
Q ss_pred HHHHHHHHHhhhhCC-CHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 55 HMIDCIKEVNNVVEI-PATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 55 ~~~e~I~~V~~iL~v-s~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
...+.|+++.+. |. +...|+.-|+..+||.++.++..+.
T Consensus 10 ~~~~~l~~L~~M-GF~~~~~~~~AL~~t~gnve~Ave~L~~ 49 (53)
T 2knz_A 10 RFQQQLEQLNSM-GFINREANLQALIATGGDINAAIERLLG 49 (53)
T ss_dssp HHHHHHHHHHTT-TCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 345667888875 78 9999999999999999999998887
No 19
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=88.99 E-value=0.87 Score=28.45 Aligned_cols=36 Identities=11% Similarity=0.146 Sum_probs=31.8
Q ss_pred HHHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 58 DCIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 58 e~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
+.|+++.+ ++.+...|+.-|+..+||.++.++-.+.
T Consensus 11 ~~I~~L~~-MGF~~~~a~~AL~~~~~nve~A~e~L~~ 46 (63)
T 1wji_A 11 KALKHITE-MGFSKEASRQALMDNGNNLEAALNVLLT 46 (63)
T ss_dssp HHHHHHHT-TTCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 45777776 6999999999999999999999998888
No 20
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=88.42 E-value=0.84 Score=29.31 Aligned_cols=34 Identities=15% Similarity=0.167 Sum_probs=29.7
Q ss_pred HHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 60 IKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 60 I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
|+++.+ +|.+...|+.-|+..+||.++-++-.|+
T Consensus 33 v~~L~~-MGF~~~~a~~AL~~t~~nve~Ave~L~~ 66 (73)
T 1wiv_A 33 VDTLLS-FGFAEDVARKALKASGGDIEKATDWVFN 66 (73)
T ss_dssp HHHHHH-HTCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 555554 5999999999999999999999998888
No 21
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=88.37 E-value=0.44 Score=28.11 Aligned_cols=36 Identities=6% Similarity=0.066 Sum_probs=31.3
Q ss_pred HHHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 58 DCIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 58 e~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
+.|+++.++ |.++..|+.-|...+||.+.-.+-.|+
T Consensus 6 eaI~rL~~m-GF~~~~a~~Al~a~~~n~e~A~~~Lf~ 41 (47)
T 1dv0_A 6 EAIERLKAL-GFPESLVIQAYFACEKNENLAANFLLS 41 (47)
T ss_dssp HHHTTTTTT-TCCHHHHHHHHTTTTSCHHHHHHHTTS
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 456677654 999999999999999999999998888
No 22
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=87.49 E-value=1.2 Score=29.48 Aligned_cols=37 Identities=14% Similarity=0.242 Sum_probs=33.1
Q ss_pred HHHHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 57 IDCIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 57 ~e~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
.+.|+++.+ +++++..|+.-|+..+||.++.++-.|+
T Consensus 22 ~~~I~qL~~-MGF~~~~a~~AL~~~n~n~e~A~ewL~~ 58 (85)
T 2dkl_A 22 SRLIKQLTD-MGFPREPAEEALKSNNMNLDQAMSALLE 58 (85)
T ss_dssp HHHHHHHHH-HTCCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 566778877 5999999999999999999999999998
No 23
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=87.41 E-value=1.2 Score=27.79 Aligned_cols=35 Identities=6% Similarity=0.107 Sum_probs=31.3
Q ss_pred HHHHHhhhhCCCHHHHHHHHHhCCC-ChHHHHHHHhc
Q psy7603 59 CIKEVNNVVEIPATTTRILLNHFKW-DKEKLMERYYD 94 (130)
Q Consensus 59 ~I~~V~~iL~vs~~~A~lLL~~fkW-n~ekLlE~y~e 94 (130)
.|+++.+ +|.++..|+.-|++.+| |.++-++-.|+
T Consensus 22 ~i~~L~~-MGF~~~~a~~AL~~t~~~nve~A~ewL~~ 57 (64)
T 2cpw_A 22 ALDVLLS-MGFPRARAQKALASTGGRSVQTACDWLFS 57 (64)
T ss_dssp HHHHHHH-HTCCHHHHHHHHHHTTTSCHHHHHHHHHS
T ss_pred HHHHHHH-cCCCHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 4667776 69999999999999999 99999998888
No 24
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.14 E-value=1.5 Score=28.86 Aligned_cols=35 Identities=11% Similarity=0.229 Sum_probs=31.0
Q ss_pred HHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 59 CIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 59 ~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
.|+++.+ +|.+...|+.-|++.+||.++-++-.|+
T Consensus 32 ~i~~L~~-MGF~~~~a~~AL~~t~~nve~A~ewL~~ 66 (83)
T 2dai_A 32 ALRQLTE-MGFPENRATKALQLNHMSVPQAMEWLIE 66 (83)
T ss_dssp HHHHHHH-HTCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4666666 6999999999999999999999998888
No 25
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=85.43 E-value=1.7 Score=26.72 Aligned_cols=39 Identities=5% Similarity=0.049 Sum_probs=31.3
Q ss_pred HHHHHHHHHhhhhCCC-HHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 55 HMIDCIKEVNNVVEIP-ATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 55 ~~~e~I~~V~~iL~vs-~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
...+.|+++.+. +.+ ...++.-|+..+||.++.++..|.
T Consensus 16 ~~~~qi~~L~~M-GF~d~~~~~~AL~~~~gnve~Ave~L~~ 55 (58)
T 1wr1_B 16 RYEHQLRQLNDM-GFFDFDRNVAALRRSGGSVQGALDSLLN 55 (58)
T ss_dssp HTHHHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 445567777775 775 667699999999999999999887
No 26
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=85.17 E-value=0.72 Score=28.02 Aligned_cols=36 Identities=8% Similarity=0.018 Sum_probs=29.1
Q ss_pred HHHHHHhhhhCCCHHH-HHHHHHhCCCChHHHHHHHhc
Q psy7603 58 DCIKEVNNVVEIPATT-TRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 58 e~I~~V~~iL~vs~~~-A~lLL~~fkWn~ekLlE~y~e 94 (130)
+.|+++.+. |.+... ++.-|+..+||+++.++..|.
T Consensus 11 ~~l~~L~~M-GF~d~~~n~~AL~~~~Gdv~~Ave~L~~ 47 (54)
T 2dah_A 11 VQLEQLRSM-GFLNREANLQALIATGGDVDAAVEKLRQ 47 (54)
T ss_dssp HHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHc-CCCcHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 346666655 886665 599999999999999999998
No 27
>4ddj_A Saposin-A, protein A; saposin fold, sphingolipid activator protein, galactosylcera lauryldimethylamine-N-oxide, lipid, detergent, lysosome; HET: LDA; 1.90A {Homo sapiens} PDB: 2dob_A*
Probab=85.10 E-value=1.8 Score=27.40 Aligned_cols=56 Identities=4% Similarity=0.073 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhhhhCCC--HHHHHHHHHhCCCChHHHHHHHhcCChhhHHHHcCCCCC
Q psy7603 53 VQHMIDCIKEVNNVVEIP--ATTTRILLNHFKWDKEKLMERYYDGDQESSTLDYSASTS 109 (130)
Q Consensus 53 ~~~~~e~I~~V~~iL~vs--~~~A~lLL~~fkWn~ekLlE~y~e~D~~kvl~~aGl~~~ 109 (130)
+..+...+.++.+.|..+ ...+..+...|.-..=.+++.... +|+.++...|+.++
T Consensus 26 ~~~I~~~l~~~C~~lp~~~~~~~C~~~v~~y~~~ii~~l~~~~~-~p~~vC~~l~lC~s 83 (83)
T 4ddj_A 26 EEEILVYLEKTCDWLPKPNMSASCKEIVDSYLPVILDIIKGEMS-RPGEVCSALNLCES 83 (83)
T ss_dssp HHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHT-CHHHHHHHTTSCC-
T ss_pred HHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHccC-CHHHHHhHcCCCCc
Confidence 345667778899999987 689999999997666666666666 89999999999764
No 28
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=84.93 E-value=1.8 Score=34.69 Aligned_cols=36 Identities=17% Similarity=0.434 Sum_probs=34.2
Q ss_pred HHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 59 CIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 59 ~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
.+.+-+.|.+.....|.-.|+.++|+.++-+.+||+
T Consensus 48 ~~~~f~~~~~~~~~~~~~~l~~~~w~~~~~~~~~~~ 83 (362)
T 4gew_A 48 KLHEFAIITATDEAFAQSILQDVDWDLKKALDVFYG 83 (362)
T ss_dssp HHHHHHHHHTCCHHHHHHHTTSSSSCHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHhhcCchHHHHHHHHcC
Confidence 577889999999999999999999999999999996
No 29
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=84.76 E-value=1.9 Score=32.23 Aligned_cols=37 Identities=16% Similarity=0.240 Sum_probs=31.8
Q ss_pred HHHHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 57 IDCIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 57 ~e~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
.+.|+++.+. |++...|+.-|+.++||.++.+|..++
T Consensus 164 eekV~~l~~M-Gf~~~~a~~AL~~~~wd~~~A~e~L~~ 200 (201)
T 3k9o_A 164 TKKIENLCAM-GFDRNAVIVALSSKSWDVETATELLLS 200 (201)
T ss_dssp HHHHHHHHTT-TCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 5566666654 999999999999999999999998875
No 30
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=84.62 E-value=1.8 Score=33.91 Aligned_cols=37 Identities=16% Similarity=0.227 Sum_probs=31.5
Q ss_pred HHHHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 57 IDCIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 57 ~e~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
.+.|+++.+. |++...|+..|..++||.++.++..++
T Consensus 216 ~~~v~~l~~m-gf~~~~~~~al~~~nWd~~~A~e~L~~ 252 (253)
T 3e46_A 216 TKKIENLCAA-GFDRNAVIVALSSKSWDVETATELLLS 252 (253)
T ss_dssp HHHHHHHHHT-TCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 4556666554 999999999999999999999998875
No 31
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=83.46 E-value=3.4 Score=27.49 Aligned_cols=47 Identities=17% Similarity=0.316 Sum_probs=40.6
Q ss_pred ecHHHHHHHHHHHHHHHhhhhC--CCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 47 LSTEEIVQHMIDCIKEVNNVVE--IPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 47 Ls~~eI~~~~~e~I~~V~~iL~--vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
|+.. =+.++..++.+|.+||| ||....+....+++.|.+|.+..++.
T Consensus 26 Ls~~-d~arL~SCLd~iR~VlGdsV~e~~Lv~ailk~dfD~ekALd~vL~ 74 (83)
T 1ufz_A 26 LSEI-DQARLYSCLDHMREVLGDAVPDDILTEAILKHKFDVQKALSVVLE 74 (83)
T ss_dssp CCHH-HHHHHHHHHHHHHHHTTTTSCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CCHH-HHHHHHHHHHHHHHHHcccCCHHHHHHHHHHhcCCHHHHHHHHHh
Confidence 5552 24578899999999998 89999999999999999999999887
No 32
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.63 E-value=3.4 Score=23.81 Aligned_cols=34 Identities=9% Similarity=0.052 Sum_probs=29.0
Q ss_pred HHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 59 CIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 59 ~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
.|+++.+ +|.++..|+.-|+..+ |.++.++-.++
T Consensus 12 ~v~~L~~-MGF~~~~a~~AL~~~~-n~e~A~~~L~~ 45 (47)
T 2ekk_A 12 QLQQLMD-MGFTREHAMEALLNTS-TMEQATEYLLT 45 (47)
T ss_dssp HHHHHHH-HHCCHHHHHHHHHHSC-SHHHHHHHHHT
T ss_pred HHHHHHH-cCCCHHHHHHHHHHcC-CHHHHHHHHHc
Confidence 4666666 6999999999999998 99999888776
No 33
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=81.20 E-value=2.1 Score=28.10 Aligned_cols=35 Identities=6% Similarity=0.004 Sum_probs=29.6
Q ss_pred HHHHHhhhhCCCHHHHHHHHHhC-CCChHHHHHHHhc
Q psy7603 59 CIKEVNNVVEIPATTTRILLNHF-KWDKEKLMERYYD 94 (130)
Q Consensus 59 ~I~~V~~iL~vs~~~A~lLL~~f-kWn~ekLlE~y~e 94 (130)
.|+++.+ +|.+...|+.-|++. +||.++-++-.|+
T Consensus 32 ~v~~L~~-MGF~~~~a~~AL~~t~n~n~e~A~ewL~~ 67 (84)
T 1vek_A 32 IVAQLVS-MGFSQLHCQKAAINTSNAGVEEAMNWLLS 67 (84)
T ss_dssp HHHHHHH-HTCCHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHH-cCCCHHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 4666666 699999999888887 5999999998888
No 34
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.95 E-value=2.3 Score=27.25 Aligned_cols=36 Identities=14% Similarity=0.103 Sum_probs=30.5
Q ss_pred HHHHHHhhhhCCCHHHHHHHHHhCC-CChHHHHHHHhc
Q psy7603 58 DCIKEVNNVVEIPATTTRILLNHFK-WDKEKLMERYYD 94 (130)
Q Consensus 58 e~I~~V~~iL~vs~~~A~lLL~~fk-Wn~ekLlE~y~e 94 (130)
+.|+++.+ +|.+...|+.-|++.+ ||.++-++-.|+
T Consensus 11 ~~v~~L~~-MGF~~~~a~~AL~~t~n~~ve~A~ewL~~ 47 (74)
T 2dag_A 11 SVIIQLVE-MGFPMDACRKAVYYTGNSGAEAAMNWVMS 47 (74)
T ss_dssp HHHHHHHH-HSCCHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHhCCCCHHHHHHHHHh
Confidence 34666776 6999999999999888 689999999888
No 35
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=80.84 E-value=4.3 Score=23.62 Aligned_cols=38 Identities=5% Similarity=0.044 Sum_probs=30.0
Q ss_pred HHHHHHHHhhhhCCC-HHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 56 MIDCIKEVNNVVEIP-ATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 56 ~~e~I~~V~~iL~vs-~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
..+.|+++.+. |.+ ...++.-|+..+||.++.++..|.
T Consensus 7 ~~~~i~~L~~M-GF~d~~~~~~AL~~~~gnv~~Ave~L~~ 45 (46)
T 2bwb_A 7 YEHQLRQLNDM-GFFDFDRNVAALRRSGGSVQGALDSLLN 45 (46)
T ss_dssp THHHHHHHHHT-TCCCHHHHHHHHHHHTTCHHHHHHHHHC
T ss_pred HHHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 35567777765 875 556689999999999999998875
No 36
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=80.12 E-value=4.2 Score=26.26 Aligned_cols=36 Identities=11% Similarity=0.062 Sum_probs=29.3
Q ss_pred HHHHHHhhhhCCC-HHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 58 DCIKEVNNVVEIP-ATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 58 e~I~~V~~iL~vs-~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
+.|+++.++ |.+ ...++.-|+..+||+++.++..|.
T Consensus 31 ~qi~qL~eM-GF~dr~~~~~AL~~t~Gnve~Ave~L~~ 67 (74)
T 1vej_A 31 QELEELKAL-GFANRDANLQALVATDGDIHAAIEMLLG 67 (74)
T ss_dssp HHHHHHHHH-TCCCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 346666664 774 677799999999999999999998
No 37
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=77.72 E-value=2.8 Score=26.04 Aligned_cols=35 Identities=11% Similarity=0.149 Sum_probs=30.3
Q ss_pred HHHHHhhhhCCCHHHHHHHHHhC-CCChHHHHHHHhc
Q psy7603 59 CIKEVNNVVEIPATTTRILLNHF-KWDKEKLMERYYD 94 (130)
Q Consensus 59 ~I~~V~~iL~vs~~~A~lLL~~f-kWn~ekLlE~y~e 94 (130)
.|+++.+ +|.+...|+.-|+.. +||.++.++-.++
T Consensus 12 ~v~~L~~-MGF~~~~a~~AL~~t~~~nve~A~ewLl~ 47 (64)
T 1whc_A 12 ALESLIE-MGFPRGRAEKALALTGNQGIEAAMDWLME 47 (64)
T ss_dssp HHHHHHT-TTCCHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHH-cCCCHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 4666776 699999999999999 7999999998888
No 38
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=76.42 E-value=4.3 Score=28.02 Aligned_cols=36 Identities=6% Similarity=0.143 Sum_probs=31.5
Q ss_pred HHHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 58 DCIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 58 e~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
..|.++.+ +|.+...|+.-|+..+||.++-++-.+.
T Consensus 80 ~~v~~L~~-MGF~~~~a~~AL~~~~~~~e~A~e~L~~ 115 (126)
T 2lbc_A 80 EIVAIITS-MGFQRNQAIQALRATNNNLERALDWIFS 115 (126)
T ss_dssp HHHHHHHH-HTSCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 34667776 6999999999999999999999999888
No 39
>1otk_A Protein PAAC, phenylacetic acid degradation protein PAAC; structural genomics, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: a.25.1.2 PDB: 3pvt_B* 3pvr_B* 3pvy_B* 3pw1_B* 3pw8_A* 3pwq_A
Probab=69.55 E-value=16 Score=28.52 Aligned_cols=62 Identities=8% Similarity=0.058 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHH----hhhhCCCHHHHHHHHHhCCCChHHHHHHHhcCChhhHHHHcCCCCCCcc
Q psy7603 50 EEIVQHMIDCIKEV----NNVVEIPATTTRILLNHFKWDKEKLMERYYDGDQESSTLDYSASTSSGL 112 (130)
Q Consensus 50 ~eI~~~~~e~I~~V----~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e~D~~kvl~~aGl~~~~~~ 112 (130)
++-.++|++.|+.+ ..+|+.++....+.=...+.+-+.|-++|.. .-..++.++||..|...
T Consensus 150 ~Es~~r~Q~Al~~~wp~~~elF~~~~~~~~l~~~Gi~~~~~~Lr~~w~~-~v~~~l~~agL~~P~~~ 215 (249)
T 1otk_A 150 DVSGQKMQQAINKLWRFTAELFDADEIDIALSEEGIAVDPRTLRAAWEA-EVFAGINEATLNVPQEQ 215 (249)
T ss_dssp HHHHHHHHHHHHHHGGGTGGGGCCCHHHHHHHHTTSSCCGGGGHHHHHH-HHHHHHHHTTCCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCccHHHHHHcCCCCCHHHHHHHHHH-HHHHHHHHcCCCCCCCc
Confidence 34466777778876 7789988888655555678899999999999 99999999999888744
No 40
>2l2d_A OTU domain-containing protein 7A; UBA fold, structural genomics, PSI-biology, protein structur initiative, northeast structural genomics consortium; NMR {Homo sapiens}
Probab=64.93 E-value=19 Score=22.99 Aligned_cols=38 Identities=18% Similarity=0.276 Sum_probs=32.9
Q ss_pred HHHHHHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHH
Q psy7603 55 HMIDCIKEVNNVVEIPATTTRILLNHFKWDKEKLMERY 92 (130)
Q Consensus 55 ~~~e~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y 92 (130)
.|...+++-..-++..|..||-||.-=+|+....+..|
T Consensus 16 dmdavls~fvrstgaepgLaRDlleGKnWDl~AAL~D~ 53 (73)
T 2l2d_A 16 DMDAVLSDFVRSTGAEPGLARDLLEGKNWDLTAALSDY 53 (73)
T ss_dssp CHHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcchhHHhhccCCccHhHHhhhH
Confidence 35667888888899999999999999999999998554
No 41
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=64.83 E-value=14 Score=22.57 Aligned_cols=38 Identities=11% Similarity=0.246 Sum_probs=32.1
Q ss_pred HHHHHHHhhhh-CCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 57 IDCIKEVNNVV-EIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 57 ~e~I~~V~~iL-~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
.+.|+.+.+++ ++++...+..|+..+.|+++.++....
T Consensus 10 ee~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~ 48 (59)
T 1wgl_A 10 EEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQ 48 (59)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 34566666666 899999999999999999999988876
No 42
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=64.74 E-value=6.3 Score=20.97 Aligned_cols=24 Identities=13% Similarity=0.210 Sum_probs=20.2
Q ss_pred HHHHHhhhhCCCHHHHHHHHHhCC
Q psy7603 59 CIKEVNNVVEIPATTTRILLNHFK 82 (130)
Q Consensus 59 ~I~~V~~iL~vs~~~A~lLL~~fk 82 (130)
.+.+|+..|+|++......|+.|+
T Consensus 23 s~~~IA~~lgis~~Tv~~~~~~~~ 46 (51)
T 1tc3_C 23 SLHEMSRKISRSRHCIRVYLKDPV 46 (51)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHCST
T ss_pred CHHHHHHHHCcCHHHHHHHHhhHH
Confidence 367899999999999888887764
No 43
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=64.26 E-value=12 Score=23.15 Aligned_cols=35 Identities=14% Similarity=0.100 Sum_probs=28.7
Q ss_pred HHHHHhhhhCCCHHHHHHHHHhCC-CChHHHHHHHhc
Q psy7603 59 CIKEVNNVVEIPATTTRILLNHFK-WDKEKLMERYYD 94 (130)
Q Consensus 59 ~I~~V~~iL~vs~~~A~lLL~~fk-Wn~ekLlE~y~e 94 (130)
.|+++.+ +|.+...|+.-|++.+ +|.+.-++-.++
T Consensus 12 ~v~~L~~-MGF~~~~a~~AL~~t~n~~~e~A~~wL~~ 47 (64)
T 2crn_A 12 LLEPLLA-MGFPVHTALKALAATGRKTAEEALAWLHD 47 (64)
T ss_dssp SHHHHHH-TSCCHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHH-cCCCHHHHHHHHHHhCCCCHHHHHHHHHh
Confidence 3566666 7999999988888875 599999988888
No 44
>3q8i_A Odorant binding protein; 2.00A {Anopheles gambiae}
Probab=63.20 E-value=29 Score=22.84 Aligned_cols=61 Identities=10% Similarity=0.044 Sum_probs=46.1
Q ss_pred ecHHHHHHHHHHHHHHHhhhhCCCHHHHHHHHHhCCCCh--HHHHHHHhcCChhhHHHHcCCCCCCcc
Q psy7603 47 LSTEEIVQHMIDCIKEVNNVVEIPATTTRILLNHFKWDK--EKLMERYYDGDQESSTLDYSASTSSGL 112 (130)
Q Consensus 47 Ls~~eI~~~~~e~I~~V~~iL~vs~~~A~lLL~~fkWn~--ekLlE~y~e~D~~kvl~~aGl~~~~~~ 112 (130)
+|.++|.+.+......=..-++||+..+..+. +.+|.. ++-+.-|.. =++.+.||....+.
T Consensus 1 ~t~~~~~~~~~~~~~~C~~e~gv~~~~~~~~~-~~~~~~~~d~~~kC~~~----C~~~k~g~~d~~G~ 63 (124)
T 3q8i_A 1 MTMKQLTNSMDMMRQACAPKFKVEEAELHGLR-KSIFPANPDKELKCYAM----CIAQMAGTMTKKGE 63 (124)
T ss_dssp -CHHHHHHHHHHHHHHHGGGSCCCHHHHHHHH-TTCCCSSCCHHHHHHHH----HHHHHTTCBCTTSC
T ss_pred CcHHHHHHHHHHHHHHhccccCCCHHHHHHHH-cCCCCCCCCcccchHHH----HHHHHcCccCcCCc
Confidence 57899999999988888999999999887665 458876 666666654 47777887655543
No 45
>1jkg_B TAP; NTF2-like domain, transport protein; 1.90A {Homo sapiens} SCOP: d.17.4.2 PDB: 1jn5_B 1go5_A
Probab=59.89 E-value=1.9 Score=33.45 Aligned_cols=41 Identities=7% Similarity=0.180 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 54 QHMIDCIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 54 ~~~~e~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
..+++.|..++...++...-|+..|..-+||.++.+..|.+
T Consensus 196 ~~q~~~v~~~~~~T~mn~~~s~~cL~~~~Wd~~~A~~~F~~ 236 (250)
T 1jkg_B 196 PEQQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQAFTH 236 (250)
T ss_dssp -----------------------------------------
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 35557899999999999999999999999999999998887
No 46
>1z67_A Hypothetical protein S4005; structural genomics, shigella flexneri protein structure initiative, midwest center for structural genomics; 1.45A {Shigella flexneri 2A} SCOP: a.259.1.1
Probab=59.14 E-value=9.9 Score=27.22 Aligned_cols=38 Identities=13% Similarity=0.193 Sum_probs=32.4
Q ss_pred eEEecHHHHHHHHHHH-HHHHhhhhCCCHHHHHHHHHhC
Q psy7603 44 FEVLSTEEIVQHMIDC-IKEVNNVVEIPATTTRILLNHF 81 (130)
Q Consensus 44 y~vLs~~eI~~~~~e~-I~~V~~iL~vs~~~A~lLL~~f 81 (130)
..-+++++|.+.+-.. |++++.-+++++..+.-.|.++
T Consensus 61 N~pIs~~ql~~~lG~~~l~~lA~q~Gl~~~~~~~~LA~~ 99 (135)
T 1z67_A 61 NQSVSGEQLESALGTNAVSDLGQKLGVDTSTASSLLAEQ 99 (135)
T ss_dssp CCCCCHHHHHHHHCHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHChHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 3557999999999655 9999999999999999888764
No 47
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=58.58 E-value=23 Score=21.47 Aligned_cols=35 Identities=6% Similarity=0.062 Sum_probs=26.7
Q ss_pred HHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 60 IKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 60 I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
++++.+.==.....-+.+|+.++||+++.++....
T Consensus 13 L~~L~eMGF~D~~~N~~aL~~~~gnv~~aI~~Ll~ 47 (54)
T 2cp8_A 13 MAHLFEMGFCDRQLNLRLLKKHNYNILQVVTELLQ 47 (54)
T ss_dssp HHHHHHHTCCCHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred HHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 34444443347778899999999999999988765
No 48
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=58.45 E-value=6.1 Score=24.14 Aligned_cols=28 Identities=21% Similarity=0.296 Sum_probs=22.6
Q ss_pred HHHhhhhCCCHHHHHHHHHhCCCChHHHH
Q psy7603 61 KEVNNVVEIPATTTRILLNHFKWDKEKLM 89 (130)
Q Consensus 61 ~~V~~iL~vs~~~A~lLL~~fkWn~ekLl 89 (130)
..+..|=||.|..++.||+||+ +..+|.
T Consensus 4 s~L~~IpGIG~kr~~~LL~~Fg-s~~~i~ 31 (63)
T 2a1j_A 4 DFLLKMPGVNAKNCRSLMHHVK-NIAELA 31 (63)
T ss_dssp HHHHTSTTCCHHHHHHHHHHCS-SHHHHH
T ss_pred hHHHcCCCCCHHHHHHHHHHcC-CHHHHH
Confidence 4567788999999999999998 555554
No 49
>2gtg_A Proactivator polypeptide; saposin, sphingolipid activator protein, lipid-binding prote binding protein; 2.40A {Homo sapiens} SCOP: a.64.1.1 PDB: 1m12_A 1sn6_A
Probab=57.90 E-value=8.3 Score=24.10 Aligned_cols=53 Identities=4% Similarity=0.028 Sum_probs=36.8
Q ss_pred HHHHHHHHHhhhhCC-CHHHHHHHHHhCCCChHHHHHHHhcCChhhHHHHcCCCCC
Q psy7603 55 HMIDCIKEVNNVVEI-PATTTRILLNHFKWDKEKLMERYYDGDQESSTLDYSASTS 109 (130)
Q Consensus 55 ~~~e~I~~V~~iL~v-s~~~A~lLL~~fkWn~ekLlE~y~e~D~~kvl~~aGl~~~ 109 (130)
.+.+.+.++.+.|.. -...+..+...|.-..=.++.. .. +|+.++...|+.++
T Consensus 29 ~I~~~l~~~C~~lp~~~~~~C~~~V~~y~~~ii~~l~~-~~-~P~~iC~~l~lC~~ 82 (83)
T 2gtg_A 29 EILDAFDKMCSKLPKSLSEECQEVVDTYGSSILSILLE-EV-SPELVCSMLHLCSG 82 (83)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHT-TC-CHHHHHHHTTSCC-
T ss_pred HHHHHHHHHHHHCCCcchhHHHHHHHHHHHHHHHHHHH-CC-CHHHHHHhcCCCCC
Confidence 345556677777764 4678899999887544444443 33 89999999999865
No 50
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=56.89 E-value=18 Score=22.66 Aligned_cols=37 Identities=5% Similarity=-0.040 Sum_probs=33.1
Q ss_pred HHHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 58 DCIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 58 e~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
+.|.+|.+.++++...|+.-|...+||.++-++....
T Consensus 11 ~~Vk~LRe~TGag~~dcKkAL~e~~GDi~~Ai~~Lr~ 47 (64)
T 2cp9_A 11 ELLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWLHK 47 (64)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4688899999999999999999999999998876655
No 51
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=55.73 E-value=20 Score=24.67 Aligned_cols=37 Identities=11% Similarity=0.106 Sum_probs=29.5
Q ss_pred HHHHHHHhhhhCCC-HHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 57 IDCIKEVNNVVEIP-ATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 57 ~e~I~~V~~iL~vs-~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
.+.|+++.+ +|++ ...++.-|+..+||.++.++..++
T Consensus 67 ~~qL~qL~e-MGF~d~~~ni~AL~~t~Gdve~AVe~L~~ 104 (108)
T 2cwb_A 67 QPQLQQLRD-MGIQDDELSLRALQATGGDIQAALELIFA 104 (108)
T ss_dssp HHHHHHHHT-TTCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHH-cCCCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 445566665 5664 578899999999999999999998
No 52
>1ooh_A Odorant binding protein LUSH; alcohol, transport protein; 1.25A {Drosophila melanogaster} SCOP: a.39.2.1 PDB: 3b6x_A 2gte_A* 1oof_A 1ooi_X 1t14_A 1oog_A* 3b7a_A 3b86_A* 3b87_A* 3b88_A* 2qdi_A*
Probab=54.84 E-value=39 Score=21.93 Aligned_cols=59 Identities=7% Similarity=0.037 Sum_probs=40.7
Q ss_pred ecHHHHHHHHHHHHHHHhhhhCCCHHHHHHHHHhCCCC--hHHHHHHHhcCChhhHHHHcCCCCCC
Q psy7603 47 LSTEEIVQHMIDCIKEVNNVVEIPATTTRILLNHFKWD--KEKLMERYYDGDQESSTLDYSASTSS 110 (130)
Q Consensus 47 Ls~~eI~~~~~e~I~~V~~iL~vs~~~A~lLL~~fkWn--~ekLlE~y~e~D~~kvl~~aGl~~~~ 110 (130)
||++++...+......=..-++||+..+..+ ++++|. .++-+.-|.. =++.+.|+....
T Consensus 3 ~t~~~~~~~~~~~~~~C~~e~~v~~~~~~~~-~~~~~~~~~d~~~kC~~~----C~~~k~g~~d~~ 63 (126)
T 1ooh_A 3 MTMEQFLTSLDMIRSGCAPKFKLKTEDLDRL-RVGDFNFPPSQDLMCYTK----CVSLMAGTVNKK 63 (126)
T ss_dssp CCHHHHHHHHHHHHHTTGGGSCCCHHHHHHH-HTTCCCSCCCHHHHHHHH----HHHHHHTSBCTT
T ss_pred CCHHHHHHHHHHHHHHhhcccCCCHHHHHHH-HcCCCCCCCCCcCCcHHH----HHHHHhCccCcC
Confidence 7899999988888888888899999877655 446675 4444444443 355666665333
No 53
>2qyp_A Proactivator polypeptide; saposin, activator protein, alternative splicing, disease mutation, gaucher disease, glycoprotein, GM2- gangliosidosis; 2.45A {Homo sapiens} SCOP: a.64.1.1 PDB: 2z9a_A
Probab=54.74 E-value=8 Score=24.78 Aligned_cols=57 Identities=4% Similarity=0.029 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHhhhhCC-CHHHHHHHHHhCCCChHHHHHHHhcCChhhHHHHcCCCCCC
Q psy7603 52 IVQHMIDCIKEVNNVVEI-PATTTRILLNHFKWDKEKLMERYYDGDQESSTLDYSASTSS 110 (130)
Q Consensus 52 I~~~~~e~I~~V~~iL~v-s~~~A~lLL~~fkWn~ekLlE~y~e~D~~kvl~~aGl~~~~ 110 (130)
-+..+...+.++.+.|.. -...+..|...|.--.=.++... . +|+.++...|+.++.
T Consensus 27 t~~~I~~~l~~~C~~lp~~~~~~C~~~V~~y~~~ii~~l~~~-~-~P~~iC~~l~lC~~~ 84 (91)
T 2qyp_A 27 TEKEILDAFDKMCSKLPKSLSEECQEVVDTYGSSILSILLEE-V-SPELVCSMLHLCSGT 84 (91)
T ss_dssp HHHHHHHHHHHHHHTSCSSTTTTHHHHHHHHHHHHHHHHHHT-C-CHHHHHHTTTCC---
T ss_pred cHHHHHHHHHHHHHHCCCCcccchHHHHHHHHHHHHHHHHHc-C-CHHHHHhhcCCCCCc
Confidence 345556667777777775 46789999999876655555543 4 899999999998765
No 54
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=54.16 E-value=26 Score=25.97 Aligned_cols=46 Identities=7% Similarity=0.016 Sum_probs=38.1
Q ss_pred ceEEecHHHHHHHHHHHHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 43 VFEVLSTEEIVQHMIDCIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 43 ~y~vLs~~eI~~~~~e~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
.+..+|+++= +.|++++.+ +.++..++.-|...+||.+.-.+.+|+
T Consensus 122 ~~i~~tpee~-----eaI~rL~~m-GF~r~~viqA~~ac~knee~Aan~L~~ 167 (171)
T 2qsf_X 122 FQVDYTPEDD-----QAISRLCEL-GFERDLVIQVYFACDKNEEAAANILFS 167 (171)
T ss_dssp ECCCCCHHHH-----HHHHHHHTT-TCCHHHHHHHHHHTTTCHHHHHHHHTT
T ss_pred ccCCCCccHH-----HHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 4556788763 457888776 999999999999999999998888887
No 55
>1nkl_A NK-lysin; saposin fold, antibacterial peptide, tumourolytic peptide; NMR {Sus scrofa} SCOP: a.64.1.1
Probab=53.85 E-value=37 Score=21.09 Aligned_cols=51 Identities=8% Similarity=0.135 Sum_probs=36.8
Q ss_pred HHHHHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc-CChhhHHHHcCCCCC
Q psy7603 56 MIDCIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD-GDQESSTLDYSASTS 109 (130)
Q Consensus 56 ~~e~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e-~D~~kvl~~aGl~~~ 109 (130)
+...++++.+.|+.-...+..++..|-. .|++.... .+|+.++...|+.++
T Consensus 27 I~~~l~~~C~~lp~~~~~C~~~V~~y~~---~iI~~l~~~~~P~~IC~~l~lC~~ 78 (78)
T 1nkl_A 27 VTQAASQVCDKLKILRGLCKKIMRSFLR---RISWDILTGKKPQAICVDIKICKE 78 (78)
T ss_dssp HHHHHHHHHHHSCSTHHHHHHHHHHHHH---HHHHHHHTTCCHHHHHHHTTCSCC
T ss_pred HHHHHHHHHhhCchhHHHHHHHHHHHHH---HHHHHHHHCCCHHHHHhccCCCCc
Confidence 3444556677777778899999999865 45554433 489999999998754
No 56
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=53.25 E-value=27 Score=22.15 Aligned_cols=30 Identities=10% Similarity=0.308 Sum_probs=22.8
Q ss_pred HHHHHHHHHHH----------HHHHhhhhCCCHHHHHHHH
Q psy7603 49 TEEIVQHMIDC----------IKEVNNVVEIPATTTRILL 78 (130)
Q Consensus 49 ~~eI~~~~~e~----------I~~V~~iL~vs~~~A~lLL 78 (130)
.++|...+.+. |.+|++.|+|++..++.-|
T Consensus 6 ~~~IL~~I~~~i~~~~g~~psv~EIa~~lgvS~~TVrr~L 45 (77)
T 2jt1_A 6 VTKIISIVQERQNMDDGAPVKTRDIADAAGLSIYQVRLYL 45 (77)
T ss_dssp HHHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccCCCcCHHHHHHHHCCCHHHHHHHH
Confidence 35566666666 8999999999998887544
No 57
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=51.83 E-value=39 Score=21.26 Aligned_cols=51 Identities=18% Similarity=0.186 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhcCChhhHHHHcCCCC
Q psy7603 53 VQHMIDCIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYDGDQESSTLDYSAST 108 (130)
Q Consensus 53 ~~~~~e~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e~D~~kvl~~aGl~~ 108 (130)
.......+..+..|-+|.+..|+.||.+|+ +.+.| +.. +++.+..-.||-+
T Consensus 11 ~~~~~~~~~~L~~IpgIG~~~A~~Ll~~fg-sl~~l---~~a-~~~eL~~i~GIG~ 61 (89)
T 1z00_A 11 QDFVSRVTECLTTVKSVNKTDSQTLLTTFG-SLEQL---IAA-SREDLALCPGLGP 61 (89)
T ss_dssp HHHHHHHHHHHTTSSSCCHHHHHHHHHHTC-BHHHH---HHC-CHHHHHTSTTCCH
T ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHHCC-CHHHH---HhC-CHHHHHhCCCCCH
Confidence 344455566677888999999999999997 44333 233 6777766666643
No 58
>1gyx_A YDCE, B1461, hypothetical protein YDCE; tautomerase, isomerase, complete proteo; HET: EPE; 1.35A {Escherichia coli} SCOP: d.80.1.1 PDB: 1gyj_A* 1gyy_A*
Probab=51.15 E-value=0.73 Score=28.94 Aligned_cols=57 Identities=11% Similarity=0.106 Sum_probs=42.0
Q ss_pred ecHHHHHHHHHHHHHHHhhhhCCCHHHHHHHHHhC---CCChHHHHHHHhcCChhhHHHHcC
Q psy7603 47 LSTEEIVQHMIDCIKEVNNVVEIPATTTRILLNHF---KWDKEKLMERYYDGDQESSTLDYS 105 (130)
Q Consensus 47 Ls~~eI~~~~~e~I~~V~~iL~vs~~~A~lLL~~f---kWn~ekLlE~y~e~D~~kvl~~aG 105 (130)
||.++..+......+.+.+.|++++....+.+... +|.. .+...+-. +.+.+.++=|
T Consensus 12 ls~eqk~~L~~~l~~~l~~~lgip~~~v~V~i~e~~~~~w~~-v~~~~~~~-~~~~l~~~p~ 71 (76)
T 1gyx_A 12 LDEQQKAALAADITDVIIRHLNSKDSSISIALQQIQPESWQA-IWDAEIAP-QMEALIKKPG 71 (76)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEECCGGGHHH-HHHHTTTT-TTTTCSBCCS
T ss_pred CCHHHHHHHHHHHHHHHHHHhCcCCceEEEEEEEeChHHEEE-EEchhhcc-ChhheeECCC
Confidence 58899999999999999999999999888887776 5766 44344443 5555554444
No 59
>1n69_A Saposin B; lipid binding protein, glycosphingolipid activator protein; HET: PEH; 2.20A {Homo sapiens} SCOP: a.64.1.3
Probab=48.99 E-value=21 Score=22.33 Aligned_cols=52 Identities=10% Similarity=0.033 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhhhhCC-CHHHHHHHHHhCCCChHHHHHHHhcCChhhHHHHcCCCC
Q psy7603 54 QHMIDCIKEVNNVVEI-PATTTRILLNHFKWDKEKLMERYYDGDQESSTLDYSAST 108 (130)
Q Consensus 54 ~~~~e~I~~V~~iL~v-s~~~A~lLL~~fkWn~ekLlE~y~e~D~~kvl~~aGl~~ 108 (130)
..+.+.+.++.+.|+- =...+..+...|.--...+++ .. +|+.++...|+.+
T Consensus 28 ~~I~~~l~~~C~~lp~~~~~~C~~~V~~y~~~ii~~l~--~~-~P~~iC~~lglC~ 80 (81)
T 1n69_A 28 QALVEHVKEECDRLGPGMADICKNYISQYSEIAIQMMM--HM-QPKEICALVGFCD 80 (81)
T ss_dssp HHHHHHHHHHGGGGCTTHHHHHHHHHHHHHHHHHHHHT--TS-CHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHh--cC-CHHHHHhhcCCCC
Confidence 4456667888888884 367899999988876666666 25 8999999999875
No 60
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=48.17 E-value=19 Score=23.36 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=19.4
Q ss_pred HHHHhhhhCCCHHHHHHHHHhCC
Q psy7603 60 IKEVNNVVEIPATTTRILLNHFK 82 (130)
Q Consensus 60 I~~V~~iL~vs~~~A~lLL~~fk 82 (130)
...+..|-||.|-.++.||+||+
T Consensus 17 ~s~L~~IpGIG~kr~~~LL~~Fg 39 (84)
T 1z00_B 17 QDFLLKMPGVNAKNCRSLMHHVK 39 (84)
T ss_dssp HHHHHTCSSCCHHHHHHHHHHSS
T ss_pred HHHHHhCCCCCHHHHHHHHHHcC
Confidence 34566788999999999999997
No 61
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=47.76 E-value=34 Score=21.76 Aligned_cols=51 Identities=18% Similarity=0.215 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhcCChhhHHHHcCCCCC
Q psy7603 54 QHMIDCIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYDGDQESSTLDYSASTS 109 (130)
Q Consensus 54 ~~~~e~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e~D~~kvl~~aGl~~~ 109 (130)
......+..+..|-+|.+..|+.||.+|+ +.+.| +..+++.+..-.||-+.
T Consensus 25 ~~~~~~~~~L~~IpgIG~~~A~~Ll~~fg-s~~~l----~~as~~eL~~i~GIG~~ 75 (91)
T 2a1j_B 25 DFVSRVTECLTTVKSVNKTDSQTLLTTFG-SLEQL----IAASREDLALCPGLGPQ 75 (91)
T ss_dssp HHHHHHHHHHTTSTTCCHHHHHHHHHHHS-SHHHH----HSCCHHHHHTSSSCCSH
T ss_pred CHHHHHHHHHHcCCCCCHHHHHHHHHHCC-CHHHH----HhCCHHHHHhCCCCCHH
Confidence 33444456677788999999999999997 43333 33377777666677543
No 62
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=46.12 E-value=27 Score=23.65 Aligned_cols=29 Identities=21% Similarity=0.034 Sum_probs=25.1
Q ss_pred HHHHHHhhhhCCCHHHHHHHHHhCCCChH
Q psy7603 58 DCIKEVNNVVEIPATTTRILLNHFKWDKE 86 (130)
Q Consensus 58 e~I~~V~~iL~vs~~~A~lLL~~fkWn~e 86 (130)
+.|.-|++-.++|...|+--|+..++|.-
T Consensus 67 edi~lv~~q~~vs~~~A~~aL~~~~gDiv 95 (102)
T 1tr8_A 67 DDIELVMNQTGASREDATRALQETGGDLA 95 (102)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCCHH
Confidence 45677778899999999999999999973
No 63
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=45.92 E-value=23 Score=21.00 Aligned_cols=25 Identities=8% Similarity=0.109 Sum_probs=18.8
Q ss_pred HHHHhhhhCCCHHHHHHHHHhCCCC
Q psy7603 60 IKEVNNVVEIPATTTRILLNHFKWD 84 (130)
Q Consensus 60 I~~V~~iL~vs~~~A~lLL~~fkWn 84 (130)
+.+++..|||++..-...|++|+.+
T Consensus 35 ~~~aA~~LGisr~tL~rklkk~gi~ 59 (63)
T 3e7l_A 35 LKRTAEEIGIDLSNLYRKIKSLNIR 59 (63)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHCcCHHHHHHHHHHhCCC
Confidence 5677888888888777777777654
No 64
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1
Probab=43.98 E-value=41 Score=26.73 Aligned_cols=69 Identities=9% Similarity=-0.007 Sum_probs=55.5
Q ss_pred HHHHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc----CChhhHHHHcCCCCCCcceeeeeecccCCccc
Q psy7603 57 IDCIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD----GDQESSTLDYSASTSSGLVFSAVDFGSGGSWF 126 (130)
Q Consensus 57 ~e~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e----~D~~kvl~~aGl~~~~~~v~~~~~~~~~~~~~ 126 (130)
.+.|.++.+.++.+--.|+-=|...+||.++-++-... ..-.+.-+++|=...+++|.+.++ |..|+-.
T Consensus 5 a~~VKeLRe~TGagmmdCKKAL~e~~GD~ekAie~LR~~a~kkG~akAaKka~R~aaEGlV~~~~~-~~~gvlv 77 (291)
T 1xb2_B 5 KELLMKLRRKTGYSFINCKKALETCGGDLKQAESWLHKQAQKEGWSKAARLHGRKTKEGLIGLLQE-GDTTVLV 77 (291)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHTTSCCCEEEEEEEEE-TTEEEEE
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccHHHHHHhccccccceEEEEEEc-CCEEEEE
Confidence 35688999999999999999999999999999987774 355667778888889999988775 4444433
No 65
>3bqp_A Proactivator polypeptide; saposin, sphingolipid activator protein, lipid binding protein, acid ceramidase,farber disease, lipid metabolism; 1.30A {Homo sapiens} PDB: 3bqq_C 2rb3_A 2r1q_A 2r0r_A
Probab=43.30 E-value=53 Score=19.78 Aligned_cols=51 Identities=10% Similarity=0.101 Sum_probs=35.8
Q ss_pred HHHHHHHHHhhhhCC-CHHHHHHHHHhCCCChHHHHHHHhc-CChhhHHHHcCCCC
Q psy7603 55 HMIDCIKEVNNVVEI-PATTTRILLNHFKWDKEKLMERYYD-GDQESSTLDYSAST 108 (130)
Q Consensus 55 ~~~e~I~~V~~iL~v-s~~~A~lLL~~fkWn~ekLlE~y~e-~D~~kvl~~aGl~~ 108 (130)
.+...++++.+.|.. -...+..+...|.- .+++.... -+|+.++...|+.+
T Consensus 27 ~I~~~l~~~C~~lp~~~~~~C~~~v~~y~~---~ii~~l~~~~~P~~iC~~l~~C~ 79 (80)
T 3bqp_A 27 EILAALEKGCSFLPDPYQKQCDQFVAEYEP---VLIEILVEVMDPSFVCLKIGACP 79 (80)
T ss_dssp HHHHHHHHHGGGSCGGGHHHHHHHHHHHHH---HHHHHHTTCCCHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHhCCCccchhhHHHHHHHHH---HHHHHHHHCCCHHHHHhhcCCCC
Confidence 344556667777764 47889999999854 44444433 38999999999875
No 66
>1of9_A Pore-forming peptide ameobapore A; toxin, saplip, amoebapore A; NMR {Entamoeba histolytica} SCOP: a.64.1.4
Probab=41.99 E-value=60 Score=20.07 Aligned_cols=49 Identities=22% Similarity=0.170 Sum_probs=35.5
Q ss_pred HHHHHHHHHhhhh-CCCHHHHHHHHHhCCCChHHHHHHHhc-CChhhHHHHcCC
Q psy7603 55 HMIDCIKEVNNVV-EIPATTTRILLNHFKWDKEKLMERYYD-GDQESSTLDYSA 106 (130)
Q Consensus 55 ~~~e~I~~V~~iL-~vs~~~A~lLL~~fkWn~ekLlE~y~e-~D~~kvl~~aGl 106 (130)
.+...++++.+.| +.=...+..+...|- ..|++.... .+|+.++...|+
T Consensus 26 ~I~~~l~~~C~~lp~~~~~~C~~~V~~y~---~~iI~~l~~~~~P~~IC~~l~l 76 (77)
T 1of9_A 26 KVKDYISSLCNKASGFIATLCTKVLDFGI---DKLIQLIEDKVDANAICAKIHA 76 (77)
T ss_dssp HHHHHHHHHHTTCSSTTHHHHHHHHHHCH---HHHHHHHHHTCCHHHHHHHHSC
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHH---HHHHHHHHhCCCHHHHHhhcCC
Confidence 3445566788888 555789999999995 445555444 489999998886
No 67
>2js9_A Saposin-like protein family protein 5; caenopore-5, saposin-like fold, antimicrobial protein; NMR {Caenorhabditis elegans} PDB: 2jsa_A
Probab=41.62 E-value=47 Score=22.00 Aligned_cols=54 Identities=4% Similarity=-0.031 Sum_probs=38.1
Q ss_pred cHHHHHHHHHHHHHHHhhhhCCC----HHHHHHHHHhCCCChHHHHHHHhc-CChhhHHHHcCCCC
Q psy7603 48 STEEIVQHMIDCIKEVNNVVEIP----ATTTRILLNHFKWDKEKLMERYYD-GDQESSTLDYSAST 108 (130)
Q Consensus 48 s~~eI~~~~~e~I~~V~~iL~vs----~~~A~lLL~~fkWn~ekLlE~y~e-~D~~kvl~~aGl~~ 108 (130)
|.++|+ ..+.++.++|.-+ ...+..++..| ...|++.+.. .+|+.++.+.|+.+
T Consensus 41 t~~~I~----~~L~~~C~~lp~~ipf~~~~C~~~V~~y---~~~II~~L~~~~~P~~VC~~L~lC~ 99 (99)
T 2js9_A 41 DANVIK----KDFDAECKKLFHTIPFGTRECDHYVNSK---VDPIIHELEGGTAPKDVCTKLNECP 99 (99)
T ss_dssp CHHHHH----HHHHHHHHTGGGGSTTHHHHHHTTTTTT---HHHHHHHHHHTCCTTHHHHHTTCCC
T ss_pred hHHHHH----HHHHHHHHcCCCcchHHHHHHHHHHHHH---HHHHHHHHHhCCCHHHHHhhcCCCC
Confidence 445554 4556667766633 57788888887 4777777755 58999999999864
No 68
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=40.58 E-value=41 Score=21.30 Aligned_cols=32 Identities=9% Similarity=0.164 Sum_probs=24.2
Q ss_pred cHHHHHHHHHH----HHHHHhhhhCCCHHHHHHHHH
Q psy7603 48 STEEIVQHMID----CIKEVNNVVEIPATTTRILLN 79 (130)
Q Consensus 48 s~~eI~~~~~e----~I~~V~~iL~vs~~~A~lLL~ 79 (130)
+-.+|...+.+ .+.+++..|+|++...|..|.
T Consensus 3 ~L~~Il~~L~~~g~vsv~eLa~~l~VS~~TIRrdL~ 38 (78)
T 1xn7_A 3 SLIQVRDLLALRGRMEAAQISQTLNTPQPMINAMLQ 38 (78)
T ss_dssp CHHHHHHHHHHSCSBCHHHHHHHTTCCHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHH
Confidence 34556665554 588999999999999997664
No 69
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}
Probab=40.11 E-value=6 Score=30.10 Aligned_cols=36 Identities=11% Similarity=0.290 Sum_probs=0.0
Q ss_pred HHHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 58 DCIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 58 e~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
+.|+++.+ .+.....++..|++.+|++++.+|+++.
T Consensus 179 ~~v~~~~~-mgf~~~~~~~al~~~~~~~~~~~~~l~~ 214 (216)
T 2pwq_A 179 VIIKKITE-MGFSEDQAKNALIKANWNETLALNTLLE 214 (216)
T ss_dssp -------------------------------------
T ss_pred hHHHHHHH-cCCCHHHHHHHHHHcCCchHHHHHHHhc
Confidence 33444433 3778889999999999999999998876
No 70
>3r72_A Odorant binding protein Asp5; helical protein, odorant molecules, antennae, transport PROT; HET: NBB; 1.15A {Apis mellifera}
Probab=39.53 E-value=70 Score=20.76 Aligned_cols=59 Identities=8% Similarity=0.071 Sum_probs=41.1
Q ss_pred ecHHHHHHHHHHHHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhcCChhhHHHHcCCCCCCc
Q psy7603 47 LSTEEIVQHMIDCIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYDGDQESSTLDYSASTSSG 111 (130)
Q Consensus 47 Ls~~eI~~~~~e~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e~D~~kvl~~aGl~~~~~ 111 (130)
+|.+++.+.+......=..-++||+.....+. +.+|..++-+.-|.. =++.+.|+. ..+
T Consensus 3 ~t~~~~~~~~~~~~~~C~~e~gv~~~~~~~~~-~~~~~~d~~~kC~~~----C~~~k~g~~-~~g 61 (122)
T 3r72_A 3 MSADQVEKLAKNMRKSCLQKIAITEELVDGMR-RGEFPDDHDLQCYTT----CIMKLLRTF-KNG 61 (122)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTCCHHHHHHGG-GTCCCCCHHHHHHHH----HHHHHTTSE-ETT
T ss_pred CCHHHHHHHHHHHHHhhhcccCCCHHHHHHHH-cCCCCCCCCcchHHH----HHHHHhCch-hcC
Confidence 68899999999988888888999998876554 445544554444443 466666665 443
No 71
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=39.40 E-value=34 Score=22.63 Aligned_cols=31 Identities=19% Similarity=0.425 Sum_probs=25.5
Q ss_pred HHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 60 IKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 60 I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
|.+|+.-.||+++ .|.+||+ ||+.|+...+.
T Consensus 31 i~~Ia~~agvs~~---t~Y~~F~-sK~~L~~~~~~ 61 (188)
T 3qkx_A 31 MLKLAKEANVAAG---TIYLYFK-NKDELLEQFAH 61 (188)
T ss_dssp HHHHHHHHTCCHH---HHHHHSS-SHHHHHHHHHH
T ss_pred HHHHHHHhCCCcc---hHHHHcC-CHHHHHHHHHH
Confidence 6678888888875 4789999 99999888776
No 72
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=38.17 E-value=37 Score=21.78 Aligned_cols=24 Identities=13% Similarity=0.149 Sum_probs=19.6
Q ss_pred HHHHHhhhhCCCHHHHHHHHHhCC
Q psy7603 59 CIKEVNNVVEIPATTTRILLNHFK 82 (130)
Q Consensus 59 ~I~~V~~iL~vs~~~A~lLL~~fk 82 (130)
.+.+++.+|+|++..-...|++|+
T Consensus 56 N~s~AA~~LGISR~TLyrKLkk~g 79 (81)
T 1umq_A 56 NVSETARRLNMHRRTLQRILAKRS 79 (81)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHTSS
T ss_pred CHHHHHHHhCCCHHHHHHHHHHhC
Confidence 356888899999988888888775
No 73
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*
Probab=37.80 E-value=81 Score=24.62 Aligned_cols=46 Identities=20% Similarity=0.223 Sum_probs=28.8
Q ss_pred ecHHH--HHHHHHHHHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHH
Q psy7603 47 LSTEE--IVQHMIDCIKEVNNVVEIPATTTRILLNHFKWDKEKLMERY 92 (130)
Q Consensus 47 Ls~~e--I~~~~~e~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y 92 (130)
||++| ..+.+.+.|++.--.-.+........||..+||+++..+.+
T Consensus 35 lt~~q~~~l~~lR~~l~~~~~~~~~dD~~LLRFLRArkfdv~kA~~mL 82 (320)
T 3q8g_A 35 LTKEQEEALLQFRSILLEKNYKERLDDSTLLRFLRARKFDINASVEMF 82 (320)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCCSSCSHHHHHHHHHHTTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 55543 33344444444432234666777888999999998876655
No 74
>3jsj_A Putative TETR-family transcriptional regulator; DNA-binding, transcription regulation; 2.10A {Streptomyces avermitilis ma-4680}
Probab=37.69 E-value=38 Score=22.74 Aligned_cols=32 Identities=9% Similarity=0.270 Sum_probs=26.4
Q ss_pred HHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 59 CIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 59 ~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
.+++|+.-.||+++ .|.+||+ ||+.|+...+.
T Consensus 30 t~~~IA~~aGvs~~---tly~~F~-sK~~L~~~~~~ 61 (190)
T 3jsj_A 30 GVEALCKAAGVSKR---SMYQLFE-SKDELLAASLK 61 (190)
T ss_dssp CHHHHHHHHTCCHH---HHHHHCS-CHHHHHHHHHH
T ss_pred cHHHHHHHhCCCHH---HHHHHcC-CHHHHHHHHHH
Confidence 36788888999885 4789999 99999887776
No 75
>3loc_A HTH-type transcriptional regulator RUTR; helix-turn-helix, putative transcriptional regulator, dimer, structural genomics, PSI; HET: MSE; 2.50A {Escherichia coli}
Probab=37.12 E-value=39 Score=22.87 Aligned_cols=32 Identities=22% Similarity=0.292 Sum_probs=26.3
Q ss_pred HHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 59 CIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 59 ~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
.+++|+.-.||+++ .|.+||+ ||+.|+...+.
T Consensus 40 s~~~IA~~aGvs~~---tlY~~F~-sKe~L~~~~~~ 71 (212)
T 3loc_A 40 RLEQIAELAGVSKT---NLLYYFP-SKEALYIAVLR 71 (212)
T ss_dssp CHHHHHHHHTSCHH---HHHHHSS-SHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHH---HHhhhCC-CHHHHHHHHHH
Confidence 37889999999985 4889999 99988877655
No 76
>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal D homeodomain-like, DNA/RNA-binding 3-helical bundle; 1.55A {Aquifex aeolicus}
Probab=36.74 E-value=39 Score=22.61 Aligned_cols=32 Identities=22% Similarity=0.431 Sum_probs=26.0
Q ss_pred HHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 59 CIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 59 ~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
.|++|+.-.||+++ .|.+||+ ||+.|+...+.
T Consensus 24 s~~~Ia~~agvskg---tlY~~F~-sKe~L~~~~~~ 55 (179)
T 2eh3_A 24 SVEEIVKRANLSKG---AFYFHFK-SKEELITEIIE 55 (179)
T ss_dssp CHHHHHHHHTCCHH---HHHHHCS-SHHHHHHHHHH
T ss_pred CHHHHHHHhCCCcH---HHHHHcC-CHHHHHHHHHH
Confidence 37788889999986 4789998 89988877665
No 77
>3e7q_A Transcriptional regulator; structural genomics, PSI, MCSG, P structure initiative, midwest center for structural genomic binding; 2.20A {Pseudomonas aeruginosa}
Probab=36.23 E-value=40 Score=22.78 Aligned_cols=32 Identities=13% Similarity=0.382 Sum_probs=26.1
Q ss_pred HHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 59 CIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 59 ~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
.|.+|+.-.||+++ .|.+||+ ||+.|+...+.
T Consensus 36 t~~~Ia~~agvs~~---t~Y~~F~-sK~~L~~~~~~ 67 (215)
T 3e7q_A 36 SVRKICAEAGVSVG---LINHHYD-GKDALVAEAYL 67 (215)
T ss_dssp CHHHHHHHHTCCHH---HHHHHCS-SHHHHHHHHHH
T ss_pred CHHHHHHHhCCCHH---HHHHHcC-CHHHHHHHHHH
Confidence 46788999999986 4779999 99988877666
No 78
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=36.06 E-value=40 Score=22.85 Aligned_cols=31 Identities=16% Similarity=0.291 Sum_probs=24.8
Q ss_pred HHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 60 IKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 60 I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
|++|+.-.||+++ .|.+||+ ||+.|+...+.
T Consensus 37 i~~IA~~agvs~~---t~Y~~F~-sK~~L~~~~~~ 67 (212)
T 3knw_A 37 LQEILKTSGVPKG---SFYHYFE-SKEAFGCELLK 67 (212)
T ss_dssp HHHHHHHHTCCHH---HHHHHCS-SHHHHHHHHHH
T ss_pred HHHHHHHhCCChH---HHHHHCC-CHHHHHHHHHH
Confidence 6778888899885 4779999 99887766655
No 79
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=36.05 E-value=28 Score=20.64 Aligned_cols=35 Identities=9% Similarity=0.082 Sum_probs=27.8
Q ss_pred EecHHHHHHHHHHHHHHHhhhhCCCHHHHHHHHHh
Q psy7603 46 VLSTEEIVQHMIDCIKEVNNVVEIPATTTRILLNH 80 (130)
Q Consensus 46 vLs~~eI~~~~~e~I~~V~~iL~vs~~~A~lLL~~ 80 (130)
..|+++-.+......+.+..+|++++....+++..
T Consensus 13 grs~eqK~~l~~~lt~~l~~~lg~p~~~v~V~i~e 47 (67)
T 3m21_A 13 GPTNEQKQQLIEGVSDLMVKVLNKNKASIVVIIDE 47 (67)
T ss_dssp BSCHHHHHHHHHHHHHHHHHHHCCCGGGCEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCcCcccEEEEEEE
Confidence 46888888899998999999999998766555443
No 80
>3ni7_A Bacterial regulatory proteins, TETR family; transcriptional regulator, structural genomics, PSI-2, structure initiative; HET: MSE; 2.78A {Nitrosomonas europaea}
Probab=35.45 E-value=41 Score=23.87 Aligned_cols=31 Identities=13% Similarity=0.488 Sum_probs=26.3
Q ss_pred HHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 60 IKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 60 I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
|.+|+.-.||++.. +.+||+ +|+.|+..++.
T Consensus 30 v~~Ia~~agvs~~t---~y~~F~-~K~~L~~~~~~ 60 (213)
T 3ni7_A 30 LYDIAARLAVSLDE---IRLYFR-EKDELIDAWFD 60 (213)
T ss_dssp HHHHHHHTTSCHHH---HHHHCS-SHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHH---HHHHCC-CHHHHHHHHHH
Confidence 67788888998854 789999 99999998887
No 81
>3nxc_A HTH-type protein SLMA; nucleoid occlusion, cell division, TETR family member, DNA B protein; 2.50A {Escherichia coli}
Probab=35.21 E-value=38 Score=22.99 Aligned_cols=33 Identities=15% Similarity=0.358 Sum_probs=26.5
Q ss_pred HHHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 58 DCIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 58 e~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
-.|++|+.-.||+++. |.+||+ ||+.|+...+.
T Consensus 46 ~t~~~Ia~~agvs~~t---~Y~~F~-sK~~L~~~~~~ 78 (212)
T 3nxc_A 46 ITTAKLAASVGVSEAA---LYRHFP-SKTRMFDSLIE 78 (212)
T ss_dssp CCHHHHHHHTTSCHHH---HHTTCS-SHHHHHHHHHH
T ss_pred cCHHHHHHHhCCChhH---HHHHCC-CHHHHHHHHHH
Confidence 3467888999999864 789999 99988877765
No 82
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=35.13 E-value=33 Score=20.14 Aligned_cols=21 Identities=14% Similarity=0.275 Sum_probs=17.3
Q ss_pred HHHHHhhhhCCCHHHHHHHHH
Q psy7603 59 CIKEVNNVVEIPATTTRILLN 79 (130)
Q Consensus 59 ~I~~V~~iL~vs~~~A~lLL~ 79 (130)
...+|+.+|+||+...+..++
T Consensus 27 s~~eIA~~lgis~~tV~~~~~ 47 (68)
T 2p7v_B 27 TLEEVGKQFDVTRERIRQIEA 47 (68)
T ss_dssp CHHHHHHHHTCCHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHH
Confidence 467889999999999887664
No 83
>3bjb_A Probable transcriptional regulator, TETR family P; APC7331, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.50A {Rhodococcus SP}
Probab=34.87 E-value=42 Score=23.32 Aligned_cols=32 Identities=19% Similarity=0.189 Sum_probs=25.5
Q ss_pred HHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 59 CIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 59 ~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
.|++|+.-.||++. .|.+||+ ||+.|+...+.
T Consensus 44 s~~~IA~~AGVsk~---tlY~~F~-sKe~L~~a~~~ 75 (207)
T 3bjb_A 44 QMHEVAKRAGVAIG---TLYRYFP-SKTHLFVAVMV 75 (207)
T ss_dssp CHHHHHHHHTCCHH---HHHHHCS-SHHHHHHHHHH
T ss_pred CHHHHHHHhCCCHH---HHHHHCC-CHHHHHHHHHH
Confidence 36778888888875 4889999 99998877655
No 84
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=34.71 E-value=31 Score=20.45 Aligned_cols=34 Identities=6% Similarity=0.133 Sum_probs=24.9
Q ss_pred HHHHHHHHH--HHHHHhhhhCCCHHHHHHHHHhCCC
Q psy7603 50 EEIVQHMID--CIKEVNNVVEIPATTTRILLNHFKW 83 (130)
Q Consensus 50 ~eI~~~~~e--~I~~V~~iL~vs~~~A~lLL~~fkW 83 (130)
.-|...+.. .+.+++..|||++..-...|++|+-
T Consensus 24 ~~I~~aL~~~gn~~~aA~~LGIsr~tL~rklkk~gi 59 (61)
T 1g2h_A 24 QVLKLFYAEYPSTRKLAQRLGVSHTAIANKLKQYGI 59 (61)
T ss_dssp HHHHHHHHHSCSHHHHHHHTTSCTHHHHHHHHTTTC
T ss_pred HHHHHHHHHhCCHHHHHHHhCCCHHHHHHHHHHhCC
Confidence 334444433 3678999999999999989988864
No 85
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=34.69 E-value=45 Score=22.48 Aligned_cols=32 Identities=25% Similarity=0.502 Sum_probs=25.6
Q ss_pred HHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 59 CIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 59 ~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
.|++|+.-.||+++. |.+||+ ||+.|+...+.
T Consensus 34 t~~~Ia~~agvs~~t---~Y~~F~-sK~~L~~~~~~ 65 (202)
T 3lwj_A 34 SIRDIIALSEVGTGT---FYNYFV-DKEDILKNLLE 65 (202)
T ss_dssp CHHHHHHHHCSCHHH---HHHHCS-SHHHHHHHHHH
T ss_pred CHHHHHHHhCCCchh---HHHHcC-CHHHHHHHHHH
Confidence 367788888998864 789999 89888877766
No 86
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription regulation, TETR, DNA-binding transcription; 2.90A {Pseudomonas aeruginosa}
Probab=34.32 E-value=44 Score=23.07 Aligned_cols=32 Identities=13% Similarity=0.342 Sum_probs=25.7
Q ss_pred HHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 59 CIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 59 ~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
.|++|+.-.||+++. |.+||+ ||+.|+...+.
T Consensus 33 s~~~IA~~aGvskgt---lY~~F~-sKe~L~~a~~~ 64 (210)
T 2wui_A 33 AMADLADAAGVSRGA---VYGHYK-NKIEVCLAMCD 64 (210)
T ss_dssp CHHHHHHHHTSCHHH---HHHHCS-SHHHHHHHHHH
T ss_pred CHHHHHHHhCCCHHH---HHHHcC-CHHHHHHHHHH
Confidence 467888889999864 889999 99888876655
No 87
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.05 E-value=79 Score=19.68 Aligned_cols=36 Identities=3% Similarity=0.121 Sum_probs=29.8
Q ss_pred HHHHHhhhh-CCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 59 CIKEVNNVV-EIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 59 ~I~~V~~iL-~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
.+..+.++| +|.+.+.+..|+..+.|+++-++....
T Consensus 21 ~v~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~LL~ 57 (67)
T 2dhy_A 21 AMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQLLQ 57 (67)
T ss_dssp HHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 355566666 899999999999999999999888765
No 88
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=33.96 E-value=47 Score=22.12 Aligned_cols=32 Identities=28% Similarity=0.378 Sum_probs=25.6
Q ss_pred HHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 59 CIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 59 ~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
.|++|+.-.||+++. |.+||+ ||+.|+...+.
T Consensus 24 ti~~Ia~~agvs~~t---~Y~~F~-sK~~L~~~~~~ 55 (194)
T 3bqz_B 24 TTGEIVKLSESSKGN---LYYHFK-TKENLFLEILN 55 (194)
T ss_dssp CHHHHHHHTTCCHHH---HHHHTS-SHHHHHHHHHH
T ss_pred CHHHHHHHhCCCchh---HHHhCC-CHHHHHHHHHH
Confidence 467888999999864 779999 89888877666
No 89
>4fxe_A Antitoxin RELB; toxin/antitoxin system, toxin, nuclease, translational contr response, RELB, ribosome, toxin-toxin inhibitor compl; 2.75A {Escherichia coli} PDB: 2k29_A 2kc8_B
Probab=33.46 E-value=48 Score=21.22 Aligned_cols=27 Identities=4% Similarity=-0.025 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhhhhCCCHHHHHHHHHh
Q psy7603 54 QHMIDCIKEVNNVVEIPATTTRILLNH 80 (130)
Q Consensus 54 ~~~~e~I~~V~~iL~vs~~~A~lLL~~ 80 (130)
..+++....|.+-||++++.|..++.+
T Consensus 10 ~~lK~~a~~v~~~lGl~~s~Ai~~fl~ 36 (79)
T 4fxe_A 10 DELKARSYAALEKMGVTPSEALRLMLE 36 (79)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 456778889999999999999766543
No 90
>2gen_A Probable transcriptional regulator; APC6095, TETR family, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1
Probab=33.45 E-value=47 Score=22.70 Aligned_cols=32 Identities=22% Similarity=0.357 Sum_probs=25.3
Q ss_pred HHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 59 CIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 59 ~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
.|++|+.-.||+++ .|.+||+ ||+.|+...+.
T Consensus 29 s~~~IA~~aGvs~g---tlY~~F~-sKe~L~~av~~ 60 (197)
T 2gen_A 29 TIEMIRDRSGASIG---SLYHHFG-NKERIHGELYL 60 (197)
T ss_dssp CHHHHHHHHCCCHH---HHHHHTC-SHHHHHHHHHH
T ss_pred CHHHHHHHHCCChH---HHHHHCC-CHHHHHHHHHH
Confidence 36788899999986 4889999 99888765544
No 91
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=33.35 E-value=59 Score=24.02 Aligned_cols=45 Identities=16% Similarity=0.097 Sum_probs=32.3
Q ss_pred HHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhcCChhhHHHHcCCCC
Q psy7603 62 EVNNVVEIPATTTRILLNHFKWDKEKLMERYYDGDQESSTLDYSAST 108 (130)
Q Consensus 62 ~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e~D~~kvl~~aGl~~ 108 (130)
.+.+|=||-|-.|+.||.+|.. +.|.+.-...|++.+.+--||-+
T Consensus 73 ~L~~v~GIGpk~A~~iL~~f~~--~~l~~aI~~~d~~~L~~vpGIG~ 117 (191)
T 1ixr_A 73 LLLSVSGVGPKVALALLSALPP--RLLARALLEGDARLLTSASGVGR 117 (191)
T ss_dssp HHHSSSCCCHHHHHHHHHHSCH--HHHHHHHHTTCHHHHTTSTTCCH
T ss_pred HHhcCCCcCHHHHHHHHHhCCh--HHHHHHHHhCCHHHHHhCCCCCH
Confidence 5667999999999999999987 34554444456666665556633
No 92
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=33.27 E-value=42 Score=22.42 Aligned_cols=31 Identities=23% Similarity=0.431 Sum_probs=25.3
Q ss_pred HHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 60 IKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 60 I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
+++|+.-.||+++. |.+||+ ||+.|+...+.
T Consensus 30 ~~~IA~~agvs~~t---~Y~~F~-sK~~L~~~~~~ 60 (199)
T 3qbm_A 30 ISDIMAATGLEKGG---IYRHFE-SKEQLALAAFD 60 (199)
T ss_dssp HHHHHHHHTCCHHH---HHTTCS-SHHHHHHHHHH
T ss_pred HHHHHHHhCCCccH---HHHhCC-CHHHHHHHHHH
Confidence 67888889998754 789999 99998877765
No 93
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=33.14 E-value=38 Score=19.47 Aligned_cols=22 Identities=18% Similarity=0.214 Sum_probs=18.3
Q ss_pred HHHHHhhhhCCCHHHHHHHHHh
Q psy7603 59 CIKEVNNVVEIPATTTRILLNH 80 (130)
Q Consensus 59 ~I~~V~~iL~vs~~~A~lLL~~ 80 (130)
...+|+..|++|+...+..++.
T Consensus 33 s~~eIA~~lgis~~tv~~~~~r 54 (70)
T 2o8x_A 33 SYADAAAVCGCPVGTIRSRVAR 54 (70)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHH
Confidence 4678999999999998877654
No 94
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes}
Probab=33.12 E-value=35 Score=20.00 Aligned_cols=33 Identities=12% Similarity=0.220 Sum_probs=26.3
Q ss_pred ecHHHHHHHHHHHHHHHhhhhCCCHHHHHHHHH
Q psy7603 47 LSTEEIVQHMIDCIKEVNNVVEIPATTTRILLN 79 (130)
Q Consensus 47 Ls~~eI~~~~~e~I~~V~~iL~vs~~~A~lLL~ 79 (130)
.|+++..+......+-+.++|++|+....+++.
T Consensus 11 rs~eqk~~L~~~it~~~~~~lg~p~~~v~V~i~ 43 (65)
T 3ry0_A 11 RSPQEVAALGEALTAAAHETLGTPVEAVRVIVE 43 (65)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCCCGGGCEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHhCcCcccEEEEEE
Confidence 578888888899889999999999876554443
No 95
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1
Probab=33.00 E-value=1.1e+02 Score=22.94 Aligned_cols=62 Identities=13% Similarity=0.235 Sum_probs=52.1
Q ss_pred HHHHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhcCChhhHHHHcCCCCCCcceeeeee
Q psy7603 57 IDCIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYDGDQESSTLDYSASTSSGLVFSAVD 118 (130)
Q Consensus 57 ~e~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e~D~~kvl~~aGl~~~~~~v~~~~~ 118 (130)
...|.++.+.++.+--.|+-=|...+||.++-++-.....-.+.-+++|=...+++|.+.+.
T Consensus 4 a~~VKeLRe~TGagmmdCKkAL~e~~GD~ekAie~LR~kG~akAaKka~R~aaEGlV~~~i~ 65 (196)
T 1aip_C 4 MELIKKLREATGAGMMDVKRALEDAGWDEEKAVQLLRERGAMKAAKKADREAREGIIGHYIH 65 (196)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHTTSCCCCCEEEEEEC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHHcCCchhhHhccccccCCeEEEEEe
Confidence 35688999999999999999999999999999987777444566778888888999977763
No 96
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=32.86 E-value=46 Score=23.49 Aligned_cols=31 Identities=16% Similarity=0.262 Sum_probs=25.1
Q ss_pred HHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 60 IKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 60 I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
|++|+.-.+|++. .|.+||+ ||+.|+...+.
T Consensus 67 ~~~IA~~aGvs~~---tlY~~F~-sK~~L~~a~~~ 97 (236)
T 3q0w_A 67 VDDLAKGAGISRP---TFYFYFP-SKEAVLLTLLD 97 (236)
T ss_dssp HHHHHHHHTCCHH---HHHHHCS-SHHHHHHHHHH
T ss_pred HHHHHHHhCCcHH---HHHHHCC-CHHHHHHHHHH
Confidence 5678888888875 4889999 99998887766
No 97
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1
Probab=32.76 E-value=1.2e+02 Score=22.86 Aligned_cols=25 Identities=20% Similarity=0.220 Sum_probs=20.1
Q ss_pred CCCHHHHHHHHHhCCCChHHHHHHH
Q psy7603 68 EIPATTTRILLNHFKWDKEKLMERY 92 (130)
Q Consensus 68 ~vs~~~A~lLL~~fkWn~ekLlE~y 92 (130)
.++.......||..+||+++..+.+
T Consensus 49 ~~dd~~LlRFLrarkfdv~~A~~~l 73 (296)
T 1aua_A 49 RLDDSTLLRFLRARKFDVQLAKEMF 73 (296)
T ss_dssp SCSHHHHHHHHHHTTTCHHHHHHHH
T ss_pred CCchHHHHHHHHHcCCCHHHHHHHH
Confidence 3567778889999999998876665
No 98
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=32.75 E-value=47 Score=23.18 Aligned_cols=32 Identities=25% Similarity=0.503 Sum_probs=25.9
Q ss_pred HHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 59 CIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 59 ~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
.|++|+.-.||+++ .|.+||+ ||+.|+...+.
T Consensus 57 t~~~IA~~AGvs~~---tlY~~F~-sKe~L~~~~~~ 88 (221)
T 3g7r_A 57 GIDRITAEAQVTRA---TLYRHFS-GKDDLILAYLD 88 (221)
T ss_dssp CHHHHHHHHTCCHH---HHHHHCS-SHHHHHHHHHH
T ss_pred CHHHHHHHhCCCHH---HHHHHCC-CHHHHHHHHHH
Confidence 46778888899885 4889999 99988877766
No 99
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=32.64 E-value=37 Score=19.24 Aligned_cols=30 Identities=13% Similarity=0.233 Sum_probs=22.4
Q ss_pred ecHHHHHHHHHHHHHHHhhhhCCCHHHHHH
Q psy7603 47 LSTEEIVQHMIDCIKEVNNVVEIPATTTRI 76 (130)
Q Consensus 47 Ls~~eI~~~~~e~I~~V~~iL~vs~~~A~l 76 (130)
.|+++-.+......+-+.+.|++|+....+
T Consensus 11 rs~e~k~~l~~~i~~~l~~~lg~p~~~v~v 40 (62)
T 1otf_A 11 RTDEQKETLIRQVSEAMANSLDAPLERVRV 40 (62)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTCCGGGCEE
T ss_pred CCHHHHHHHHHHHHHHHHHHhCcCcccEEE
Confidence 477788888888888888888888765433
No 100
>3hta_A EBRA repressor; TETR family, DNA binding protein, multidrug resistance, MULT binding protein, DNA-binding, transcription; 2.30A {Streptomyces lividans} PDB: 3hth_A* 3hti_A* 3htj_A* 3iuv_A
Probab=32.62 E-value=47 Score=23.22 Aligned_cols=31 Identities=19% Similarity=0.292 Sum_probs=25.9
Q ss_pred HHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 60 IKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 60 I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
|++|+.-.||+++. |.+||+ +|+.|+...+.
T Consensus 51 ~~~IA~~aGvs~~t---lY~~F~-sK~~Ll~a~~~ 81 (217)
T 3hta_A 51 HRTVAAEADVPLGS---TTYHFA-TLDDLMVAALR 81 (217)
T ss_dssp HHHHHHHHTCCHHH---HHHHCS-SHHHHHHHHHH
T ss_pred HHHHHHHcCCCcch---hhhcCC-CHHHHHHHHHH
Confidence 67788889998864 889999 99998887766
No 101
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=32.53 E-value=51 Score=21.82 Aligned_cols=31 Identities=23% Similarity=0.464 Sum_probs=25.2
Q ss_pred HHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 60 IKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 60 I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
|++|+.-.||+++ .|.+||+ ||+.|+...+.
T Consensus 32 v~~Ia~~agvs~~---t~Y~~F~-sK~~L~~~~~~ 62 (195)
T 3ppb_A 32 TATIAREAGVATG---TLFHHFP-SKEQLLEQLFL 62 (195)
T ss_dssp HHHHHHHHTCCHH---HHHHHCS-SHHHHHHHHHH
T ss_pred HHHHHHHhCCChh---HHHHHcC-CHHHHHHHHHH
Confidence 6788888999875 4779999 99988877765
No 102
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=32.42 E-value=50 Score=22.66 Aligned_cols=32 Identities=25% Similarity=0.555 Sum_probs=25.7
Q ss_pred HHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 59 CIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 59 ~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
.|++|+.-.||+++. |.+||+ ||+.|+...+.
T Consensus 32 s~~~IA~~aGvs~~t---~Y~~F~-sKe~L~~a~~~ 63 (210)
T 3vib_A 32 SLNEIAQAAGVTRDA---LYWHFK-NKEDLFDALFQ 63 (210)
T ss_dssp CHHHHHHHHTSCHHH---HHHHCS-SHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHH---HHHHCC-CHHHHHHHHHH
Confidence 367888999999864 789999 99988776655
No 103
>3v6g_A Probable transcriptional regulatory protein (PROB family); helix-turn-helix DNA binding domain; 1.82A {Mycobacterium tuberculosis}
Probab=32.28 E-value=49 Score=23.22 Aligned_cols=31 Identities=19% Similarity=0.252 Sum_probs=25.5
Q ss_pred HHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 60 IKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 60 I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
|.+|+.-.||+++. |.+||+ +|+.|+...++
T Consensus 37 ~~~IA~~AGvs~~t---lY~~F~-sKe~L~~av~~ 67 (208)
T 3v6g_A 37 HRRVAAEANVPVGS---TTYYFN-DLDALREAALA 67 (208)
T ss_dssp HHHHHHHHTSCHHH---HHHHCS-SHHHHHHHHHH
T ss_pred HHHHHHHhCCCchh---HHHHcC-CHHHHHHHHHH
Confidence 67888999999864 889999 99988876655
No 104
>3v2l_A AGAP005208-PA; odorant binding olfaction, general odorant binding protein, transport, secreted, odorant-binding protein; HET: PG4; 1.80A {Anopheles gambiae} PDB: 4f7f_A* 3vb1_A
Probab=31.88 E-value=1e+02 Score=19.71 Aligned_cols=56 Identities=9% Similarity=0.033 Sum_probs=36.1
Q ss_pred ecHHHHHHHHHHHHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhcCChhhHHHHcCCC
Q psy7603 47 LSTEEIVQHMIDCIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYDGDQESSTLDYSAS 107 (130)
Q Consensus 47 Ls~~eI~~~~~e~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e~D~~kvl~~aGl~ 107 (130)
||.+|+.+.++..-+.=..-++||+.....+ ++.++..+.-+.-|.. =++++.|+.
T Consensus 1 mT~eq~~~~~~~~~~~C~~e~gv~~e~i~~~-~~~~~p~d~~~kC~~~----C~~~k~g~~ 56 (120)
T 3v2l_A 1 MTVEQMMKSGEMIRSVCLGKTKVAEELVNGL-RESKFADVKELKCYVN----CVMEMMQTM 56 (120)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHT-TTTCCCCCHHHHHHHH----HHHHHTTSE
T ss_pred CCHHHHHHHHHHHHHHhhhhhCcCHHHHHHH-HcCCCCCCcccchHHH----HHHHHhCCc
Confidence 6788988888877777777889998776543 4455555444444433 355555554
No 105
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=31.86 E-value=38 Score=21.14 Aligned_cols=22 Identities=14% Similarity=0.147 Sum_probs=18.4
Q ss_pred HHHHHhhhhCCCHHHHHHHHHh
Q psy7603 59 CIKEVNNVVEIPATTTRILLNH 80 (130)
Q Consensus 59 ~I~~V~~iL~vs~~~A~lLL~~ 80 (130)
...+|+.+|+|+....+..|+.
T Consensus 55 s~~eIA~~lgis~~tV~~~l~r 76 (92)
T 3hug_A 55 STAQIATDLGIAEGTVKSRLHY 76 (92)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHH
Confidence 4688999999999998877765
No 106
>2nxo_A Hypothetical protein SCO4506; PFAM, DUF178, NYSGXRC, 10093F, PSI-2, structural genomics, protein structure initiative; 2.04A {Streptomyces coelicolor} SCOP: c.94.1.1
Probab=31.85 E-value=86 Score=23.39 Aligned_cols=48 Identities=2% Similarity=-0.056 Sum_probs=31.7
Q ss_pred HHHHhhhhCCCHHHHHHHHHhCCCChHH----HHHHHhcCChhhHHHHcCCCCCCcc
Q psy7603 60 IKEVNNVVEIPATTTRILLNHFKWDKEK----LMERYYDGDQESSTLDYSASTSSGL 112 (130)
Q Consensus 60 I~~V~~iL~vs~~~A~lLL~~fkWn~ek----LlE~y~e~D~~kvl~~aGl~~~~~~ 112 (130)
+.-++..+++++..+...|..+.|.... -+++|++ ++.+.|+.+....
T Consensus 226 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~gli~~~~~ 277 (291)
T 2nxo_A 226 AEQAARWEAFDEDTLAKYFTTLDFRFGAPQLEAVTEFAR-----RVGPTTGFPADVK 277 (291)
T ss_dssp HHHHHTTSSSCHHHHHHHHHHSBCCCSHHHHHHHHHHHH-----HHSTTTTSCTTCC
T ss_pred HHHHHHHcCCCHHHHHHHHHhCccCCCHHHHHHHHHHHH-----HHHHCCCCCCCCc
Confidence 3345556788888888888888887532 3344444 6778898765533
No 107
>3crj_A Transcription regulator; APC88200, TETR, structura genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049}
Probab=31.75 E-value=45 Score=22.93 Aligned_cols=32 Identities=13% Similarity=0.310 Sum_probs=25.1
Q ss_pred HHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 59 CIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 59 ~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
.|++|+.-.||+++ .|.+||+ ||+.|+...++
T Consensus 36 s~~~IA~~agvsk~---tlY~yF~-sKe~L~~a~~~ 67 (199)
T 3crj_A 36 TIQRIADEYGKSTA---AVHYYYD-TKDDLLAAFLD 67 (199)
T ss_dssp CHHHHHHHHTSCHH---HHHTTCS-SHHHHHHHHHH
T ss_pred CHHHHHHHhCCChh---HHhhhcC-CHHHHHHHHHH
Confidence 36778888999885 4778888 89988876655
No 108
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=31.10 E-value=54 Score=22.20 Aligned_cols=31 Identities=13% Similarity=0.313 Sum_probs=24.6
Q ss_pred HHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 60 IKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 60 I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
|++|+.-.+|++. .|.+||+ +|+.|+...+.
T Consensus 54 v~~Ia~~agvs~~---t~Y~~F~-sK~~Ll~~~~~ 84 (218)
T 3dcf_A 54 LDDIADRIGFTKP---AIYYYFK-SKEDVLFAIVN 84 (218)
T ss_dssp HHHHHHHHTCCHH---HHHHHCS-SHHHHHHHHHH
T ss_pred HHHHHHHhCCCHH---HHHHHcC-CHHHHHHHHHH
Confidence 5678888888875 4779999 99988877665
No 109
>2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 1.70A {Rhodococcus SP}
Probab=30.88 E-value=55 Score=22.32 Aligned_cols=32 Identities=13% Similarity=0.346 Sum_probs=24.8
Q ss_pred HHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 59 CIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 59 ~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
.+++|+.-.||+++ .|.+||+ ||+.|+...+.
T Consensus 32 s~~~IA~~aGvs~g---tlY~yF~-sKe~L~~a~~~ 63 (194)
T 2nx4_A 32 NMRDIATEAGYTNG---ALSHYFA-GKDEILRTSYE 63 (194)
T ss_dssp CHHHHHHHHTCCHH---HHHHHCS-SHHHHHHHHHH
T ss_pred CHHHHHHHhCCCcc---hHHHhCc-CHHHHHHHHHH
Confidence 36788888999986 5788998 78888766554
No 110
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=30.88 E-value=58 Score=21.40 Aligned_cols=32 Identities=25% Similarity=0.474 Sum_probs=25.8
Q ss_pred HHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 59 CIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 59 ~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
.|++|+.-.||+++. |.+||+ +|+.|+...+.
T Consensus 26 t~~~Ia~~agvs~~t---~Y~~F~-sK~~L~~~~~~ 57 (170)
T 3egq_A 26 SIEEIAREAKVSKSL---IFYHFE-SKQKLLEEAVM 57 (170)
T ss_dssp CHHHHHHHHTSCHHH---HHHHCS-SHHHHHHHHHH
T ss_pred cHHHHHHHhCCCchh---HHHHcC-CHHHHHHHHHH
Confidence 367788888998864 789999 89888887776
No 111
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=30.67 E-value=57 Score=21.54 Aligned_cols=32 Identities=22% Similarity=0.351 Sum_probs=24.6
Q ss_pred HHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 59 CIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 59 ~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
.+++|+.-.||+++ .|.+||+ ||+.|+...+.
T Consensus 32 t~~~IA~~agvs~~---t~Y~~F~-sK~~L~~~~~~ 63 (191)
T 3on4_A 32 SFKDIATAINIKTA---SIHYHFP-SKEDLGVAVIS 63 (191)
T ss_dssp CHHHHHHHHTCCHH---HHHHHCS-SHHHHHHHHHH
T ss_pred CHHHHHHHhCCCcc---hhhhcCC-CHHHHHHHHHH
Confidence 36778888999875 4789998 88888766655
No 112
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=30.65 E-value=40 Score=20.29 Aligned_cols=34 Identities=15% Similarity=0.248 Sum_probs=27.1
Q ss_pred ecHHHHHHHHHHHHHHHhhhhCCCHHHHHHHHHh
Q psy7603 47 LSTEEIVQHMIDCIKEVNNVVEIPATTTRILLNH 80 (130)
Q Consensus 47 Ls~~eI~~~~~e~I~~V~~iL~vs~~~A~lLL~~ 80 (130)
.|.++..+......+-+..+|++|+....+++..
T Consensus 12 rs~eqK~~L~~~it~~l~~~lg~p~~~v~V~i~e 45 (72)
T 3mb2_A 12 RSTEQKAELARALSAAAAAAFDVPLAEVRLIIQE 45 (72)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCCcccEEEEEEE
Confidence 5888888888998889999999998765555443
No 113
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=30.51 E-value=43 Score=18.95 Aligned_cols=31 Identities=6% Similarity=0.064 Sum_probs=22.7
Q ss_pred ecHHHHHHHHHHHHHHHhhhhCCCHHHHHHH
Q psy7603 47 LSTEEIVQHMIDCIKEVNNVVEIPATTTRIL 77 (130)
Q Consensus 47 Ls~~eI~~~~~e~I~~V~~iL~vs~~~A~lL 77 (130)
.|+++-.+......+-+...|++++....++
T Consensus 11 rs~eqk~~l~~~i~~~l~~~lg~~~~~v~V~ 41 (61)
T 2opa_A 11 RTDEQKRNLVEKVTEAVKETTGASEEKIVVF 41 (61)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCCCGGGCEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHhCcCcCeEEEE
Confidence 4677777788888888888888887654433
No 114
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=30.42 E-value=43 Score=19.15 Aligned_cols=30 Identities=10% Similarity=0.104 Sum_probs=21.4
Q ss_pred ecHHHHHHHHHHHHHHHhhhhCCCHHHHHH
Q psy7603 47 LSTEEIVQHMIDCIKEVNNVVEIPATTTRI 76 (130)
Q Consensus 47 Ls~~eI~~~~~e~I~~V~~iL~vs~~~A~l 76 (130)
.+.++-.+......+.++.+|++|+....+
T Consensus 12 ~s~eqk~~l~~~lt~~l~~~lg~~~~~v~V 41 (64)
T 3abf_A 12 RPPEKKRELVRRLTEMASRLLGEPYEEVRV 41 (64)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTTCCGGGEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCCcccEEE
Confidence 466777777777777788888888765443
No 115
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=30.38 E-value=51 Score=22.00 Aligned_cols=32 Identities=28% Similarity=0.409 Sum_probs=25.8
Q ss_pred HHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 59 CIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 59 ~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
.|++|+.-.||+++. |.+||+ ||+.|+...+.
T Consensus 33 tv~~Ia~~agvs~~t---~Y~~F~-sK~~L~~~~~~ 64 (196)
T 3he0_A 33 SMQKLANEAGVAAGT---IYRYFS-DKEHLLEEVRL 64 (196)
T ss_dssp CHHHHHHHHTSCHHH---HHTTCS-SHHHHHHHHHH
T ss_pred CHHHHHHHhCCCcch---HHHhcC-CHHHHHHHHHH
Confidence 367788889998754 789999 99999877766
No 116
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=30.34 E-value=45 Score=19.45 Aligned_cols=34 Identities=9% Similarity=0.118 Sum_probs=24.7
Q ss_pred EecHHHHHHHHHHHHHHHhhhhCCCHHHHHHHHH
Q psy7603 46 VLSTEEIVQHMIDCIKEVNNVVEIPATTTRILLN 79 (130)
Q Consensus 46 vLs~~eI~~~~~e~I~~V~~iL~vs~~~A~lLL~ 79 (130)
..|.++-++......+.++.+|++++....+++.
T Consensus 9 grt~eqK~~L~~~it~~~~~~lg~~~~~v~V~i~ 42 (62)
T 3m20_A 9 KLDVGKKREFVERLTSVAAEIYGMDRSAITILIH 42 (62)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHTCCTTSCEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCcCcceEEEEEE
Confidence 3577888888888888888888888765544433
No 117
>3eup_A Transcriptional regulator, TETR family; structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 1.99A {Cytophaga hutchinsonii}
Probab=30.28 E-value=40 Score=22.61 Aligned_cols=32 Identities=13% Similarity=0.377 Sum_probs=26.2
Q ss_pred HHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 59 CIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 59 ~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
.|++|+.-.||+++ .|.+||+ ||+.|+...+.
T Consensus 33 ti~~IA~~agvs~~---t~Y~~F~-sK~~L~~~~~~ 64 (204)
T 3eup_A 33 SLTDLTEATNLTKG---SIYGNFE-NKEAVAIAAFD 64 (204)
T ss_dssp CHHHHHHHHTCCHH---HHTTTSS-SHHHHHHHHHH
T ss_pred CHHHHHHHhCCCcH---HHHHhCC-CHHHHHHHHHH
Confidence 47888999999985 4779999 99988877665
No 118
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr; TERT family, transcriptional repressor, DNA-binding; HET: RF1; 1.85A {Mycobacterium tuberculosis}
Probab=29.93 E-value=55 Score=23.40 Aligned_cols=31 Identities=19% Similarity=0.295 Sum_probs=25.5
Q ss_pred HHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 60 IKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 60 I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
|++|+.-.+|++.. |.+||+ +|+.|+...+.
T Consensus 66 ~~~IA~~aGvs~~t---lY~~F~-sK~~L~~~v~~ 96 (255)
T 3g1o_A 66 VDDLAKGAGISRPT---FYFYFP-SKEAVLLTLLD 96 (255)
T ss_dssp HHHHHHHHTCCHHH---HHHHCS-SHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHH---HHHHcC-CHHHHHHHHHH
Confidence 67888889998864 889999 99988877666
No 119
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=29.88 E-value=31 Score=18.33 Aligned_cols=24 Identities=8% Similarity=-0.034 Sum_probs=19.3
Q ss_pred HHHHHhhhhCCCHHHHHHHHHhCC
Q psy7603 59 CIKEVNNVVEIPATTTRILLNHFK 82 (130)
Q Consensus 59 ~I~~V~~iL~vs~~~A~lLL~~fk 82 (130)
.+.+|+..|+|++......|+.++
T Consensus 23 s~~~ia~~lgvs~~Tv~r~l~~~~ 46 (52)
T 1jko_C 23 PRQQLAIIFGIGVSTLYRYFPASS 46 (52)
T ss_dssp CHHHHHHTTSCCHHHHHHHSCTTC
T ss_pred CHHHHHHHHCCCHHHHHHHHHHcc
Confidence 478899999999988877776654
No 120
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=29.80 E-value=44 Score=18.73 Aligned_cols=29 Identities=10% Similarity=0.119 Sum_probs=22.1
Q ss_pred ecHHHHHHHHHHHHHHHhhhhCCCHHHHH
Q psy7603 47 LSTEEIVQHMIDCIKEVNNVVEIPATTTR 75 (130)
Q Consensus 47 Ls~~eI~~~~~e~I~~V~~iL~vs~~~A~ 75 (130)
.++++-.+......+-+..+|++|+....
T Consensus 14 ~s~e~k~~l~~~l~~~l~~~lg~p~~~v~ 42 (63)
T 2x4k_A 14 RSDEQLKNLVSEVTDAVEKTTGANRQAIH 42 (63)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCCCGGGCE
T ss_pred CCHHHHHHHHHHHHHHHHHHhCcCcccEE
Confidence 46777788888888888888888876443
No 121
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=29.60 E-value=35 Score=22.77 Aligned_cols=22 Identities=9% Similarity=0.178 Sum_probs=19.2
Q ss_pred HHHHhhhhCCCHHHHHHHHHhC
Q psy7603 60 IKEVNNVVEIPATTTRILLNHF 81 (130)
Q Consensus 60 I~~V~~iL~vs~~~A~lLL~~f 81 (130)
+.+..+.||++.-.|..||.+|
T Consensus 83 ~ae~Rd~lg~sRK~ai~lLE~~ 104 (121)
T 2pjp_A 83 AADFRDRLGVGRKLAIQILEYF 104 (121)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHCCcHHHHHHHHHHH
Confidence 5667889999999999999987
No 122
>4ac0_A Tetracycline repressor protein class B from trans TN1 0; transcription; HET: MIY; 2.45A {Escherichia coli}
Probab=29.54 E-value=50 Score=23.63 Aligned_cols=32 Identities=16% Similarity=0.254 Sum_probs=27.3
Q ss_pred HHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 59 CIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 59 ~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
.+++|+.-++|++. .|.+||+ ||+.|+....+
T Consensus 25 s~~~IA~~aGvs~~---tlY~~F~-~K~~Ll~a~~~ 56 (202)
T 4ac0_A 25 TTRKLAQKLGVEQP---TLYWHVK-NKRALLDALAI 56 (202)
T ss_dssp CHHHHHHHHTSCHH---HHHTTCS-SHHHHHHHHHH
T ss_pred CHHHHHHHhCCCch---hHHhhcC-CHHHHHHHHHH
Confidence 46789999999985 4889999 99999988877
No 123
>2i6e_A Hypothetical protein; NYSGXRC,10093B, structural genomics, PSI-2, protein structure initiative; 2.50A {Deinococcus radiodurans} SCOP: c.94.1.1
Probab=29.27 E-value=1.3e+02 Score=23.05 Aligned_cols=49 Identities=10% Similarity=0.184 Sum_probs=37.2
Q ss_pred HHHHHHHHhhhhCCCHHHHHHHHHhCCCChH----HHHHHHhcCChhhHHHHcCCCCCC
Q psy7603 56 MIDCIKEVNNVVEIPATTTRILLNHFKWDKE----KLMERYYDGDQESSTLDYSASTSS 110 (130)
Q Consensus 56 ~~e~I~~V~~iL~vs~~~A~lLL~~fkWn~e----kLlE~y~e~D~~kvl~~aGl~~~~ 110 (130)
..+.++.++..+++++..+..-|.++.|... +-+++|++ ++ +.|+.++.
T Consensus 234 ~~e~~~~~a~~~gl~~~~i~~yl~~~~~~l~~~~~~~l~~~~~-----~~-~~glip~~ 286 (301)
T 2i6e_A 234 LAEVSQRHAEKLGLPERVVQHYLWNFRYHLEAPDRLGLREFAD-----LA-VPGHAELT 286 (301)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHTCBCSCCHHHHHHHHHHHH-----HH-STTCCCCC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhCeeCCCHHHHHHHHHHHH-----HH-hcCCCCCC
Confidence 4456677788889999999888999988763 34566666 77 88987654
No 124
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=29.10 E-value=61 Score=22.08 Aligned_cols=31 Identities=16% Similarity=0.281 Sum_probs=25.0
Q ss_pred HHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 60 IKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 60 I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
|++|+.-.||+++. |.+||+ ||+.|+...+.
T Consensus 35 i~~Ia~~agvs~~t---~Y~~F~-~K~~L~~~~~~ 65 (189)
T 3vp5_A 35 IMHIVKALDIPRGS---FYQYFE-DLKDAYFYVLS 65 (189)
T ss_dssp HHHHHHHHTCCHHH---HHHHCS-SHHHHHHHHHH
T ss_pred HHHHHHHhCCChHH---HHHHCC-CHHHHHHHHHH
Confidence 67788888999864 779999 99888877665
No 125
>1rkt_A Protein YFIR; transcription regulator, structural genomics, PSI, protein S initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=29.02 E-value=55 Score=22.40 Aligned_cols=31 Identities=16% Similarity=0.274 Sum_probs=24.8
Q ss_pred HHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 60 IKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 60 I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
|++|+.-.||+++. |.+||+ ||+.|+...+.
T Consensus 35 ~~~IA~~agvs~gt---lY~yF~-sKe~L~~~v~~ 65 (205)
T 1rkt_A 35 MKDVVEESGFSRGG---VYLYFS-STEEMFRRIIE 65 (205)
T ss_dssp HHHHHHHHTSCHHH---HHTTCS-CHHHHHHHHHH
T ss_pred HHHHHHHHCCCcch---hhhhCC-CHHHHHHHHHH
Confidence 66788888888864 889998 99888877665
No 126
>2qib_A TETR-family transcriptional regulator; HTH DNA binding, STRU genomics, MCSG, PSI-2, protein structure initiative; HET: P6G; 1.70A {Streptomyces coelicolor A3}
Probab=28.89 E-value=60 Score=22.85 Aligned_cols=32 Identities=22% Similarity=0.327 Sum_probs=25.8
Q ss_pred HHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 59 CIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 59 ~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
.|++|+.-.+|++. .|.+||+ ||+.|+...+.
T Consensus 35 tv~~IA~~agvs~~---t~Y~~F~-sK~~Ll~~~~~ 66 (231)
T 2qib_A 35 SIDEIASAAGISRP---LVYHYFP-GKLSLYEAALQ 66 (231)
T ss_dssp CHHHHHHHHTSCHH---HHHHHCS-SHHHHHHHHHH
T ss_pred CHHHHHHHhCCCHH---HHHHHCC-CHHHHHHHHHH
Confidence 36778888899875 4789999 99999887776
No 127
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=28.61 E-value=1e+02 Score=19.25 Aligned_cols=47 Identities=13% Similarity=0.220 Sum_probs=37.4
Q ss_pred EEecHHHHHHHHHHHHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc-CCh
Q psy7603 45 EVLSTEEIVQHMIDCIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD-GDQ 97 (130)
Q Consensus 45 ~vLs~~eI~~~~~e~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e-~D~ 97 (130)
+.|++.+- +.|..|. -+|.++.+|+.=|++-+=|.|+.++=.|. .||
T Consensus 13 ~~ls~se~-----e~V~~Lv-sMGFs~~qA~kALKat~~NvErAaDWLFSH~D~ 60 (63)
T 1wgn_A 13 QMLSPSER-----QCVETVV-NMGYSYECVLRAMKKKGENIEQILDYLFAHSGP 60 (63)
T ss_dssp HTCCHHHH-----HHHHHHH-HHHCCHHHHHHHHHHHCSCHHHHHHHHHHHSCC
T ss_pred HhhCcchH-----HHHHHHH-HcCCCHHHHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence 56777654 3366665 47899999999999999999999999898 443
No 128
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=28.59 E-value=48 Score=20.16 Aligned_cols=21 Identities=14% Similarity=0.192 Sum_probs=17.4
Q ss_pred HHHHHhhhhCCCHHHHHHHHH
Q psy7603 59 CIKEVNNVVEIPATTTRILLN 79 (130)
Q Consensus 59 ~I~~V~~iL~vs~~~A~lLL~ 79 (130)
.+.+|+..|+|++..++..|.
T Consensus 16 s~~eLa~~lgvs~~tv~r~L~ 36 (81)
T 2htj_A 16 KTAEIAEALAVTDYQARYYLL 36 (81)
T ss_dssp CHHHHHHHHTSCHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHH
Confidence 478899999999999886654
No 129
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=28.45 E-value=67 Score=21.92 Aligned_cols=32 Identities=19% Similarity=0.469 Sum_probs=25.1
Q ss_pred HHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 59 CIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 59 ~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
.|++|+.-.||+++ .|.+||+ ||+.|+...+.
T Consensus 36 s~~~IA~~agvs~~---tlY~~F~-sKe~L~~~~~~ 67 (204)
T 2ibd_A 36 TVRDIADAAGILSG---SLYHHFD-SKESMVDEILR 67 (204)
T ss_dssp CHHHHHHHTTSCHH---HHHHHCS-CHHHHHHHHHH
T ss_pred CHHHHHHHhCCCch---hHHHhcC-CHHHHHHHHHH
Confidence 36788888999985 4789998 89888876554
No 130
>4aci_A HTH-type transcriptional repressor ACNR; aconitase, citrate, TETR superfamily; HET: CIT; 1.65A {Corynebacterium glutamicum} PDB: 4ac6_A*
Probab=28.32 E-value=54 Score=21.89 Aligned_cols=32 Identities=19% Similarity=0.373 Sum_probs=26.1
Q ss_pred HHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 59 CIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 59 ~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
.|++|+.-.||++.. |.+||+ ||+.|+...+.
T Consensus 36 t~~~IA~~agvs~~t---~Y~~F~-sK~~L~~~~~~ 67 (191)
T 4aci_A 36 TVRRLEEATGKSRGA---IFHHFG-DKENLFLALAR 67 (191)
T ss_dssp CHHHHHHHHTCCHHH---HHHHHS-SHHHHHHHHHH
T ss_pred CHHHHHHHHCCCchH---HHHHCC-CHHHHHHHHHH
Confidence 478889999999864 789999 89888877665
No 131
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=27.86 E-value=53 Score=21.60 Aligned_cols=25 Identities=16% Similarity=0.102 Sum_probs=21.2
Q ss_pred HHHHHhhhhCCCHHHHHHHHHhCCC
Q psy7603 59 CIKEVNNVVEIPATTTRILLNHFKW 83 (130)
Q Consensus 59 ~I~~V~~iL~vs~~~A~lLL~~fkW 83 (130)
.+.+++.+|||++..-+..|++|+-
T Consensus 73 n~~~AA~~LGIsR~TL~rkLkk~gi 97 (98)
T 1eto_A 73 NQTRAALMMGINRGTLRKKLKKYGM 97 (98)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHTTC
T ss_pred CHHHHHHHhCCCHHHHHHHHHHhCC
Confidence 3568899999999999999998863
No 132
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=27.33 E-value=51 Score=20.45 Aligned_cols=21 Identities=14% Similarity=0.221 Sum_probs=17.4
Q ss_pred HHHHHhhhhCCCHHHHHHHHH
Q psy7603 59 CIKEVNNVVEIPATTTRILLN 79 (130)
Q Consensus 59 ~I~~V~~iL~vs~~~A~lLL~ 79 (130)
...+|+.+|+||+...+..++
T Consensus 40 s~~EIA~~lgis~~tV~~~~~ 60 (87)
T 1tty_A 40 TLEEVGQYFNVTRERIRQIEV 60 (87)
T ss_dssp CHHHHHHHHTCCHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHH
Confidence 468999999999999887654
No 133
>3frq_A Repressor protein MPHR(A); macrolide antibiotic. repressor, biosensor, erythromycin, STRPTOMYCES, natural products, biosynthesis, DNA-binding; HET: ERY; 1.76A {Escherichia coli} PDB: 3g56_A
Probab=27.31 E-value=58 Score=21.93 Aligned_cols=32 Identities=19% Similarity=0.468 Sum_probs=26.2
Q ss_pred HHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 59 CIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 59 ~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
.|++|+.-.||+++. |.+||+ +|+.|+...+.
T Consensus 30 t~~~IA~~agvs~~t---~Y~~F~-sK~~L~~a~~~ 61 (195)
T 3frq_A 30 TLSGVAKEVGLSRAA---LIQRFT-NRDTLLVRMME 61 (195)
T ss_dssp CHHHHHHHHTCCHHH---HHHHHC-SHHHHHHHHHH
T ss_pred CHHHHHHHhCCCHHH---HHHHcC-CHHHHHHHHHH
Confidence 478899999999865 779999 99888777665
No 134
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=27.29 E-value=70 Score=21.35 Aligned_cols=32 Identities=19% Similarity=0.413 Sum_probs=25.2
Q ss_pred HHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 59 CIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 59 ~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
.+++|+.-.||+++. |.+||+ ||+.|+...+.
T Consensus 30 t~~~IA~~Agvs~~t---ly~~F~-sK~~L~~a~~~ 61 (194)
T 3dpj_A 30 SFVDISAAVGISRGN---FYYHFK-TKDEILAEVIR 61 (194)
T ss_dssp CHHHHHHHHTCCHHH---HHHHCS-SHHHHHHHHHH
T ss_pred CHHHHHHHHCCChHH---HHHHcC-CHHHHHHHHHH
Confidence 367788888998854 789999 99888877655
No 135
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=27.22 E-value=61 Score=21.71 Aligned_cols=32 Identities=19% Similarity=0.229 Sum_probs=24.9
Q ss_pred HHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 59 CIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 59 ~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
.|++|+.-.||+++ .|.+||+ ||+.|+...+.
T Consensus 33 s~~~Ia~~agvs~~---t~Y~~F~-sK~~L~~~~~~ 64 (203)
T 3b81_A 33 TLAFIINKLGISKG---ALYHYFS-SKEECADAAIE 64 (203)
T ss_dssp CHHHHHHHHTCCHH---HHHTTCS-SHHHHHHHHHH
T ss_pred cHHHHHHHhCCCch---hHHHHcC-CHHHHHHHHHH
Confidence 36788888999875 4778898 88888876655
No 136
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=27.04 E-value=47 Score=21.89 Aligned_cols=31 Identities=19% Similarity=0.510 Sum_probs=24.5
Q ss_pred HHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 60 IKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 60 I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
|.+|+.-.||+++. |.+||+ ||+.|+...+.
T Consensus 35 v~~Ia~~agvs~~t---~Y~~F~-sK~~L~~~~~~ 65 (177)
T 3kkc_A 35 VQDVIGLANVGRST---FYSHYE-SKEVLLKELCE 65 (177)
T ss_dssp HHHHHHHHCCCHHH---HTTTCS-STHHHHHHHHH
T ss_pred HHHHHHHhCCcHhh---HHHHcC-CHHHHHHHHHH
Confidence 57788888888754 778888 88888887776
No 137
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=27.01 E-value=54 Score=19.43 Aligned_cols=21 Identities=19% Similarity=0.273 Sum_probs=16.8
Q ss_pred HHHHHhhhhCCCHHHHHHHHH
Q psy7603 59 CIKEVNNVVEIPATTTRILLN 79 (130)
Q Consensus 59 ~I~~V~~iL~vs~~~A~lLL~ 79 (130)
...+|+..|++|+...+..+.
T Consensus 32 s~~eIA~~l~is~~tV~~~~~ 52 (73)
T 1ku3_A 32 TLEEVGAYFGVTRERIRQIEN 52 (73)
T ss_dssp CHHHHHHHHTCCHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHH
Confidence 457899999999998876544
No 138
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=27.00 E-value=51 Score=21.94 Aligned_cols=32 Identities=19% Similarity=0.355 Sum_probs=24.4
Q ss_pred HHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 59 CIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 59 ~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
.+++|+.-.||+++ .|.+||+ ||+.|+...+.
T Consensus 32 t~~~IA~~agvs~~---tlY~~F~-sK~~L~~~~~~ 63 (197)
T 3rd3_A 32 GLNEILQSAGVPKG---SFYHYFK-SKEQFGQALLE 63 (197)
T ss_dssp CHHHHHHHHTCCHH---HHTTTCS-CHHHHHHHHHH
T ss_pred CHHHHHHHhCCChh---hHHHHcC-CHHHHHHHHHH
Confidence 36778888899875 4788998 99887666554
No 139
>1u9d_A Hypothetical protein VC0714; structural genomics, MCSG, protein STR initiative, PSI, midwest center for structural genomics; 1.70A {Vibrio cholerae o1 biovar eltor str} SCOP: d.80.1.5
Probab=26.96 E-value=44 Score=23.25 Aligned_cols=41 Identities=7% Similarity=0.146 Sum_probs=33.7
Q ss_pred cccceEEecHHHHHHHHHHHHHHHhhhhCCCHHHHHHHHHh
Q psy7603 40 EEFVFEVLSTEEIVQHMIDCIKEVNNVVEIPATTTRILLNH 80 (130)
Q Consensus 40 ~~~~y~vLs~~eI~~~~~e~I~~V~~iL~vs~~~A~lLL~~ 80 (130)
....++-++.+.+...=+..|.++++++++|++.-.+-+.+
T Consensus 17 Phlr~rgi~~e~v~~lS~~Lid~La~i~~~~~e~fTle~i~ 57 (122)
T 1u9d_A 17 PHLRFRAVEAHIVESLVPTLLNELSSLLSTARNAFTFELIN 57 (122)
T ss_dssp CEEEEESSCHHHHHHHHHHHHHHHHHHHTCCGGGCEEEECC
T ss_pred ceEEECCCCHHHHHHHhHHHHHHHHHHHCCCcccEEEEEee
Confidence 45667999999999999999999999999998765444333
No 140
>1ui5_A A-factor receptor homolog; helix-turn-helix, alpha-helix-bundle, antibiotic; 2.40A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1 PDB: 1ui6_A
Probab=26.85 E-value=69 Score=22.31 Aligned_cols=32 Identities=22% Similarity=0.318 Sum_probs=25.3
Q ss_pred HHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 59 CIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 59 ~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
.|++|+.-.||+++ .|.+||+ ||+.|+...++
T Consensus 31 s~~~IA~~AGvskg---tlY~~F~-sKe~L~~~~~~ 62 (215)
T 1ui5_A 31 TLSEIVAHAGVTKG---ALYFHFA-AKEDLAHAILE 62 (215)
T ss_dssp CHHHHHHHHTCCHH---HHHHHCS-SHHHHHHHHHH
T ss_pred CHHHHHHHhCCCch---hhHhhCC-CHHHHHHHHHH
Confidence 47788888999975 4788998 89888876655
No 141
>3npi_A TETR family regulatory protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 2.96A {Corynebacterium diphtheriae}
Probab=26.84 E-value=57 Score=23.25 Aligned_cols=32 Identities=16% Similarity=0.238 Sum_probs=26.9
Q ss_pred HHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 59 CIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 59 ~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
.|++|+.-.||++.. |.+||+ ||+.|+...+.
T Consensus 40 t~~~IA~~aGvs~~t---lY~~F~-sKe~Ll~av~~ 71 (251)
T 3npi_A 40 KLEAIAKKSGMSKRM---IHYHFG-DKRGLYICCLE 71 (251)
T ss_dssp CHHHHHHHHCCCHHH---HHHHHC-SHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHH---HHHHcC-CHHHHHHHHHH
Confidence 578899999999864 889999 99998887766
No 142
>3bqy_A Putative TETR family transcriptional regulator; structural genomics, strept coelicolor, PSI-2, protein structure initiative; 1.95A {Streptomyces coelicolor A3}
Probab=26.73 E-value=69 Score=22.72 Aligned_cols=32 Identities=16% Similarity=0.384 Sum_probs=25.6
Q ss_pred HHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 59 CIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 59 ~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
.+++|+.-++|++.. |.+||+ ||+.|+....+
T Consensus 24 s~~~IA~~aGvs~~t---lY~hf~-~K~~Ll~~~~~ 55 (209)
T 3bqy_A 24 TMRRLAQAMDVQAGA---LYRYFA-AKQDLLTAMAE 55 (209)
T ss_dssp CHHHHHHHHTSCHHH---HHHHCS-SHHHHHHHHHH
T ss_pred CHHHHHHHhCCCcch---HHhhcC-CHHHHHHHHHH
Confidence 467889999999854 788998 89888877665
No 143
>2cob_A LCOR protein; MLR2, KIAA1795, helix-turn-helix, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.15
Probab=26.62 E-value=84 Score=19.95 Aligned_cols=39 Identities=10% Similarity=0.176 Sum_probs=29.9
Q ss_pred CCCcccceEEecHHHHHHHHHHH------HHHHhhhhCCCHHHHH
Q psy7603 37 NDVEEFVFEVLSTEEIVQHMIDC------IKEVNNVVEIPATTTR 75 (130)
Q Consensus 37 ~~~~~~~y~vLs~~eI~~~~~e~------I~~V~~iL~vs~~~A~ 75 (130)
..++...|+..+.++|+..+... |..++...|||.+...
T Consensus 4 ~~pk~~ryr~Yte~~L~~Ai~aVr~g~mS~~~Aak~yGVP~sTL~ 48 (70)
T 2cob_A 4 GSSGRGRYRQYNSEILEEAISVVMSGKMSVSKAQSIYGIPHSTLE 48 (70)
T ss_dssp CCCCSSCSCCCCHHHHHHHHHHHHTTSSCHHHHHHHHTCCHHHHH
T ss_pred CCcccccccccCHHHHHHHHHHHHcCCccHHHHHHHhCCChHHHH
Confidence 35778889999999999888763 4557778888877654
No 144
>3cdl_A Transcriptional regulator AEFR; APC88582, TETR, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; HET: MSE; 2.36A {Pseudomonas syringae PV}
Probab=26.59 E-value=64 Score=22.04 Aligned_cols=32 Identities=22% Similarity=0.451 Sum_probs=25.5
Q ss_pred HHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 59 CIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 59 ~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
.|++|+.-.||++. .|.+||+ ||+.|+...+.
T Consensus 31 s~~~IA~~aGvsk~---tlY~~F~-sKe~L~~a~~~ 62 (203)
T 3cdl_A 31 SMDRIAARAEVSKR---TVYNHFP-SKEELFAEMLQ 62 (203)
T ss_dssp CHHHHHHHTTSCHH---HHHTTSS-SHHHHHHHHHH
T ss_pred CHHHHHHHhCCCHH---HHHHHCC-CHHHHHHHHHH
Confidence 37788889999986 4788998 89888877655
No 145
>2opt_A Actii protein; helical protein, TETR family, APO-protein, transcriptional R transcription; 2.05A {Streptomyces coelicolor} PDB: 3b6a_A* 3b6c_A*
Probab=26.26 E-value=57 Score=23.86 Aligned_cols=31 Identities=13% Similarity=0.412 Sum_probs=25.8
Q ss_pred HHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 60 IKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 60 I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
+.+|+.-++|++. .|.+||+ ||+.|+....+
T Consensus 29 ~r~IA~~aGvs~~---tlY~hF~-~K~~Ll~~~~~ 59 (234)
T 2opt_A 29 MRRLAQELKTGHA---SLYAHVG-NRDELLDLVFD 59 (234)
T ss_dssp HHHHHHHHTCCHH---HHHHHHC-SHHHHHHHHHH
T ss_pred HHHHHHHHCCChh---HHHHHcC-CHHHHHHHHHH
Confidence 6788999999975 4889999 99998887766
No 146
>2id6_A Transcriptional regulator, TETR family; 1.75A {Thermotoga maritima} SCOP: a.4.1.9 a.121.1.1 PDB: 3ih2_A 3ih3_A 3ih4_A 1zkg_A* 2iek_A* 1z77_A*
Probab=26.24 E-value=48 Score=22.71 Aligned_cols=33 Identities=21% Similarity=0.345 Sum_probs=25.8
Q ss_pred HHHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 58 DCIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 58 e~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
-.|++|+.-.||+++. |.+||+ ||+.|+...++
T Consensus 26 ~s~~~IA~~Agvskgt---lY~yF~-sKe~L~~~~~~ 58 (202)
T 2id6_A 26 ATTDEIAEKAGVAKGL---IFHYFK-NKEELYYQAYM 58 (202)
T ss_dssp CCHHHHHHHHTCCTHH---HHHHHS-SHHHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHH---HHHHcC-CHHHHHHHHHH
Confidence 3478888899999864 789999 99888776554
No 147
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*
Probab=26.15 E-value=1.6e+02 Score=23.22 Aligned_cols=37 Identities=8% Similarity=-0.142 Sum_probs=26.1
Q ss_pred CCCHHHHHHHHHhCCCChHHHHHHHhcCChhhHHHHcCC
Q psy7603 68 EIPATTTRILLNHFKWDKEKLMERYYDGDQESSTLDYSA 106 (130)
Q Consensus 68 ~vs~~~A~lLL~~fkWn~ekLlE~y~e~D~~kvl~~aGl 106 (130)
..+.......||..+||.++..+.+-. .-+.+++.++
T Consensus 32 ~~dD~~LlRFLrarkfdv~~A~~~l~~--~l~wR~~~~~ 68 (403)
T 1olm_A 32 NPDDYFLLRWLRARSFDLQKSEAMLRK--HVEFRKQKDI 68 (403)
T ss_dssp CCCHHHHHHHHHHTTTCHHHHHHHHHH--HHHHHHHTTG
T ss_pred CCChhHHHHHHHhcCCCHHHHHHHHHH--HHHHHHHcCC
Confidence 467777888999999999887776643 3345555543
No 148
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=25.95 E-value=61 Score=21.90 Aligned_cols=32 Identities=16% Similarity=0.369 Sum_probs=25.3
Q ss_pred HHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 59 CIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 59 ~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
.|++|+.-.||+++ .|.+||+ ||+.|+...+.
T Consensus 31 ti~~IA~~agvs~~---t~Y~~F~-sK~~L~~~~~~ 62 (193)
T 2dg8_A 31 SHRRIAQRAGVPLG---SMTYHFT-GIEQLLREAFG 62 (193)
T ss_dssp CHHHHHHHHTSCTH---HHHHHCS-SHHHHHHHHHH
T ss_pred cHHHHHHHhCCCch---hhheeCC-CHHHHHHHHHH
Confidence 36778888899885 4779999 99888877665
No 149
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*
Probab=25.87 E-value=48 Score=24.36 Aligned_cols=25 Identities=8% Similarity=0.017 Sum_probs=20.2
Q ss_pred CCCHHHHHHHHHhCCCChHHHHHHH
Q psy7603 68 EIPATTTRILLNHFKWDKEKLMERY 92 (130)
Q Consensus 68 ~vs~~~A~lLL~~fkWn~ekLlE~y 92 (130)
.++.......||..+||+++..+.+
T Consensus 30 ~~dd~~LlRFLra~k~dv~~A~~~l 54 (262)
T 1r5l_A 30 PLTDSFLLRFLRARDFDLDLAWRLL 54 (262)
T ss_dssp CCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 3577788889999999998877654
No 150
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=25.84 E-value=56 Score=21.25 Aligned_cols=31 Identities=13% Similarity=0.170 Sum_probs=23.3
Q ss_pred HHHHHHHHHH----HHHHHhhhhCCCHHHHHHHHH
Q psy7603 49 TEEIVQHMID----CIKEVNNVVEIPATTTRILLN 79 (130)
Q Consensus 49 ~~eI~~~~~e----~I~~V~~iL~vs~~~A~lLL~ 79 (130)
-++|...+.+ .+.+++..|+|++...|..|.
T Consensus 4 L~~Il~~L~~~g~vsv~eLA~~l~VS~~TIRrDL~ 38 (87)
T 2k02_A 4 LMEVRDMLALQGRMEAKQLSARLQTPQPLIDAMLE 38 (87)
T ss_dssp THHHHHHHHHSCSEEHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHH
Confidence 3455555554 588999999999999997654
No 151
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=25.61 E-value=62 Score=19.19 Aligned_cols=20 Identities=10% Similarity=-0.105 Sum_probs=16.0
Q ss_pred HHHHhhhhCCCHHHHHHHHH
Q psy7603 60 IKEVNNVVEIPATTTRILLN 79 (130)
Q Consensus 60 I~~V~~iL~vs~~~A~lLL~ 79 (130)
+.+|+.+|+|+......|.+
T Consensus 13 ~~eva~~lgvsrstiy~~~~ 32 (66)
T 1z4h_A 13 LKFIMADTGFGKTFIYDRIK 32 (66)
T ss_dssp HHHHHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 46678889999998887765
No 152
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=25.58 E-value=53 Score=22.37 Aligned_cols=22 Identities=9% Similarity=0.293 Sum_probs=18.4
Q ss_pred HHHHHhhhhCCCHHHHHHHHHh
Q psy7603 59 CIKEVNNVVEIPATTTRILLNH 80 (130)
Q Consensus 59 ~I~~V~~iL~vs~~~A~lLL~~ 80 (130)
...+|+.+|+||+...+..|+.
T Consensus 111 s~~EIA~~lgis~~tV~~~l~r 132 (157)
T 2lfw_A 111 SPEDAAYLIEVDTSEVETLVTE 132 (157)
T ss_dssp CHHHHHHTTTSCHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHH
Confidence 5678899999999998877764
No 153
>2y2z_A SIM16, SIMR, putative repressor simreg2; transcription, simocyclinone regulator, TETR-family; 1.95A {Streptomyces antibioticus} PDB: 2y30_A* 2y31_A* 3zql_A
Probab=25.44 E-value=62 Score=24.22 Aligned_cols=45 Identities=24% Similarity=0.315 Sum_probs=36.7
Q ss_pred EecHHHHHHHHHHH----------HHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 46 VLSTEEIVQHMIDC----------IKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 46 vLs~~eI~~~~~e~----------I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
.++.+.|...-.+. +++|+.-++|++. .|.+||+ ||+.|+....+
T Consensus 26 ~~tr~~Il~AA~~L~~e~G~~~~Smr~IA~~aGVs~~---tlY~hF~-~K~~Ll~av~~ 80 (267)
T 2y2z_A 26 TLSRDQIVRAAVKVADTEGVEAASMRRVAAELGAGTM---SLYYYVP-TKEDLVELMVD 80 (267)
T ss_dssp EECHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHH---HHHTTCC-SHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCCHH---HHHHHcC-CHHHHHHHHHH
Confidence 57888887766654 6789999999975 5889999 99999988776
No 154
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=25.41 E-value=2.1e+02 Score=24.65 Aligned_cols=74 Identities=11% Similarity=0.171 Sum_probs=50.1
Q ss_pred cccceEEecHHHHHHHHHHHHHHHhhh-------hCCCHHHHHHHHHh-CCCCh-----HHHHHHHhcCChhhHHHHcCC
Q psy7603 40 EEFVFEVLSTEEIVQHMIDCIKEVNNV-------VEIPATTTRILLNH-FKWDK-----EKLMERYYDGDQESSTLDYSA 106 (130)
Q Consensus 40 ~~~~y~vLs~~eI~~~~~e~I~~V~~i-------L~vs~~~A~lLL~~-fkWn~-----ekLlE~y~e~D~~kvl~~aGl 106 (130)
....|..|+.+++...+...+.++..- +.+++.....|+.+ |.|.- .+++++... ++-.-..-.|-
T Consensus 655 ~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~i~~~v~-~~l~~~~l~~~ 733 (758)
T 3pxi_A 655 EIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVE-DRLSEELLRGN 733 (758)
T ss_dssp EEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTTTTTHHHHHHHHTH-HHHHHHHHTTC
T ss_pred eEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCCCCChHHHHHHHHHHH-HHHHHHHHcCC
Confidence 356677789999999888888877543 46899888888765 99964 678888887 66444444454
Q ss_pred CCCCccee
Q psy7603 107 STSSGLVF 114 (130)
Q Consensus 107 ~~~~~~v~ 114 (130)
..+...|.
T Consensus 734 ~~~~~~~~ 741 (758)
T 3pxi_A 734 IHKGQHIV 741 (758)
T ss_dssp SCSSSEEE
T ss_pred CCCCCEEE
Confidence 44444443
No 155
>4fm4_A NitrIle hydratase alpha subunit; iron type hydratase, hydrolysis, sulfinic acid, lyase; 2.38A {Comamonas testosteroni}
Probab=25.38 E-value=28 Score=26.69 Aligned_cols=40 Identities=3% Similarity=0.095 Sum_probs=28.7
Q ss_pred hhhCCCHHHHHHHHHhCCCChHHHHHHHhcCChhhHHHHcCCCCCCccee
Q psy7603 65 NVVEIPATTTRILLNHFKWDKEKLMERYYDGDQESSTLDYSASTSSGLVF 114 (130)
Q Consensus 65 ~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e~D~~kvl~~aGl~~~~~~v~ 114 (130)
.+||+||. =|.....-.+... +|.++|.+.|+..|....+
T Consensus 110 ~vLGlpP~---------WyKs~~YRsR~Vr-ePR~VL~EfG~~lP~~v~V 149 (209)
T 4fm4_A 110 TIIGMAPD---------WYKELEYRARIVR-QARTVLKEIGLDLPESIDI 149 (209)
T ss_dssp HHHCSCCH---------HHHSHHHHHHTTT-SHHHHHHHTTCCCCTTSEE
T ss_pred cccCCChh---------HhhChHHHHHHHH-hHHHHHHHcCCCCCCCeeE
Confidence 46788876 1233555566666 9999999999998886543
No 156
>2np5_A Transcriptional regulator; TETR family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=25.33 E-value=78 Score=21.67 Aligned_cols=32 Identities=16% Similarity=0.333 Sum_probs=25.3
Q ss_pred HHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 59 CIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 59 ~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
.+++|+.-.||+++ .|.+||+ ||+.|+...+.
T Consensus 31 s~~~IA~~AGvs~g---tlY~~F~-sKe~L~~a~~~ 62 (203)
T 2np5_A 31 SVREVAKRAGVSIG---AVQHHFS-TKDEMFAFALR 62 (203)
T ss_dssp CHHHHHHHHTCCHH---HHHHHCS-SHHHHHHHHHH
T ss_pred cHHHHHHHhCCCHH---HHHHHcC-CHHHHHHHHHH
Confidence 36788999999986 4788998 78888776655
No 157
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=25.27 E-value=1.1e+02 Score=22.73 Aligned_cols=45 Identities=4% Similarity=-0.037 Sum_probs=31.7
Q ss_pred HHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhcCChhhHHHHcCCCC
Q psy7603 62 EVNNVVEIPATTTRILLNHFKWDKEKLMERYYDGDQESSTLDYSAST 108 (130)
Q Consensus 62 ~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e~D~~kvl~~aGl~~ 108 (130)
.+.+|=||-|-.|+.||.+|..+ .|.+.-...|++.+.+--||-+
T Consensus 74 ~L~~V~GIGpk~A~~iL~~f~~~--~l~~aI~~~d~~~L~~vpGIG~ 118 (203)
T 1cuk_A 74 ELIKTNGVGPKLALAILSGMSAQ--QFVNAVEREEVGALVKLPGIGK 118 (203)
T ss_dssp HHHHSSSCCHHHHHHHHHHSCHH--HHHHHHHTTCHHHHHTSTTCCH
T ss_pred HHhcCCCcCHHHHHHHHhhCChH--HHHHHHHhCCHHHHhhCCCCCH
Confidence 46669999999999999999874 3444444456666666556643
No 158
>2g7g_A RHA04620, putative transcriptional regulator; helix-turn-helix, structural genomics, PSI, protein structur initiative; 2.01A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=25.01 E-value=53 Score=23.29 Aligned_cols=45 Identities=13% Similarity=0.322 Sum_probs=33.1
Q ss_pred EecHHHHHHHHHHH--------HHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 46 VLSTEEIVQHMIDC--------IKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 46 vLs~~eI~~~~~e~--------I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
.++.+.|...-.+. +.+|+.-++|++.. |.+||+ ||+.|+....+
T Consensus 10 ~~~r~~Il~aA~~l~~~~G~~s~~~IA~~aGvs~~t---lY~hF~-~K~~Ll~~~~~ 62 (213)
T 2g7g_A 10 RLDRERIAEAALELVDRDGDFRMPDLARHLNVQVSS---IYHHAK-GRAAVVELVRH 62 (213)
T ss_dssp -CCHHHHHHHHHHHHHHHSSCCHHHHHHHTTSCHHH---HHTTSC-HHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCCCHHHHHHHhCCCHhH---HHHHcC-CHHHHHHHHHH
Confidence 35677776665555 56789999999854 788998 89888877655
No 159
>2oi8_A Putative regulatory protein SCO4313; TETR, structural genomics, PSI-2, P structure initiative; 2.50A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=24.86 E-value=69 Score=22.55 Aligned_cols=32 Identities=9% Similarity=0.338 Sum_probs=24.4
Q ss_pred HHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 59 CIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 59 ~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
.+++|+.-.||++.. |.+||+ ||+.|+.....
T Consensus 38 s~~~IA~~agvs~~t---~Y~~F~-~K~~L~~a~~~ 69 (216)
T 2oi8_A 38 SLNAIAKRMGMSGPA---LYRYFD-GRDELITELIR 69 (216)
T ss_dssp CHHHHHHHTTCCHHH---HHTTCS-SHHHHHHHHHH
T ss_pred CHHHHHHHhCCCHHH---HHHHcC-CHHHHHHHHHH
Confidence 366788888998864 788998 89888765544
No 160
>2hyt_A TETR-family transcriptional regulator; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.64A {Pectobacterium atrosepticum}
Probab=24.76 E-value=43 Score=22.88 Aligned_cols=31 Identities=19% Similarity=0.417 Sum_probs=23.8
Q ss_pred HHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 60 IKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 60 I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
+++|+.-.||+++ .|.+||+ ||+.|+...++
T Consensus 35 ~~~IA~~aGvs~~---tlY~~F~-sKe~L~~av~~ 65 (197)
T 2hyt_A 35 MDDLTAQASLTRG---ALYHHFG-DKKGLLAAVVE 65 (197)
T ss_dssp HHHHHHHHTCCTT---HHHHHHS-SHHHHHHHHHH
T ss_pred HHHHHHHhCCCHH---HHHHHcC-CHHHHHHHHHH
Confidence 6778888888875 4778998 88888766654
No 161
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=24.55 E-value=31 Score=28.18 Aligned_cols=45 Identities=7% Similarity=0.109 Sum_probs=34.5
Q ss_pred eEEecHHHHHHHHHHHHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 44 FEVLSTEEIVQHMIDCIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 44 y~vLs~~eI~~~~~e~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
+--||+++- +.|+++.. +|.+...|+..|+..+||.++-.+-.|+
T Consensus 318 ~i~~t~ee~-----eaI~rL~~-mGF~~~~a~~al~a~~~n~e~A~~~L~~ 362 (368)
T 1oqy_A 318 YIQVTPQEK-----EAIERLKA-LGFPESLVIQAYFACEKNENLAANFLLS 362 (368)
T ss_dssp SCCCCTTTH-----HHHHHHHH-HTCCSHHHHHHTSSSSSCSSHHHHHHHH
T ss_pred cccCCCcCH-----HHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHhh
Confidence 445666544 34566654 4999999999999999999988887777
No 162
>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis}
Probab=23.88 E-value=69 Score=19.82 Aligned_cols=22 Identities=23% Similarity=0.229 Sum_probs=19.1
Q ss_pred HHHHhhhhCCCHHHHHHHHHhC
Q psy7603 60 IKEVNNVVEIPATTTRILLNHF 81 (130)
Q Consensus 60 I~~V~~iL~vs~~~A~lLL~~f 81 (130)
|+++++.|+|+....+-|.+..
T Consensus 19 i~EaAeylgIg~~~l~~L~~~~ 40 (70)
T 1y6u_A 19 IEEASKYFRIGENKLRRLAEEN 40 (70)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHC
T ss_pred HHHHHHHHCcCHHHHHHHHHcC
Confidence 6778999999999999998773
No 163
>2w53_A Repressor, SMet; antibiotic resistance, multi-drug efflux pump, transcription regulation, transcriptional repressor, DNA binding; 2.00A {Stenotrophomonas maltophilia} PDB: 3p9t_A*
Probab=23.82 E-value=75 Score=21.85 Aligned_cols=32 Identities=13% Similarity=0.262 Sum_probs=25.0
Q ss_pred HHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 59 CIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 59 ~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
.|++|+.-.||+++ .|.+||+ ||+.|+...+.
T Consensus 33 s~~~IA~~aGvskg---tlY~~F~-sKe~L~~av~~ 64 (219)
T 2w53_A 33 TLEMIGARAGYTRG---AVYWHFK-NKSEVLAAIVE 64 (219)
T ss_dssp CHHHHHHHHTSCHH---HHHTTCS-SHHHHHHHHHH
T ss_pred CHHHHHHHhCCCch---HHhhcCC-CHHHHHHHHHH
Confidence 46788899999986 4778887 88888776655
No 164
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=23.78 E-value=68 Score=17.96 Aligned_cols=20 Identities=10% Similarity=0.037 Sum_probs=16.1
Q ss_pred HHHHhhhhCCCHHHHHHHHH
Q psy7603 60 IKEVNNVVEIPATTTRILLN 79 (130)
Q Consensus 60 I~~V~~iL~vs~~~A~lLL~ 79 (130)
..+|+..|+|++...+..++
T Consensus 16 ~~eIA~~l~is~~tV~~~~~ 35 (61)
T 2jpc_A 16 NHGISEKLHISIKTVETHRM 35 (61)
T ss_dssp SHHHHHHTCSCHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHH
Confidence 56889999999998876554
No 165
>1z0x_A Transcriptional regulator, TETR family; structural genomics, PSI, P structure initiative; 2.40A {Enterococcus faecalis} SCOP: a.4.1.9 a.121.1.1
Probab=23.76 E-value=73 Score=22.60 Aligned_cols=32 Identities=19% Similarity=0.401 Sum_probs=25.6
Q ss_pred HHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 59 CIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 59 ~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
.+++|+.-+||++.. |.+||+ ||+.|+...++
T Consensus 28 s~~~IA~~aGvs~~t---lY~~F~-sK~~Ll~av~~ 59 (220)
T 1z0x_A 28 SMRKVAKQLGVQAPA---IYWYFK-NKQALLQSMAE 59 (220)
T ss_dssp CHHHHHHHHTSCHHH---HHTTCS-SHHHHHHHHHH
T ss_pred CHHHHHHHcCCCHHH---HHHhcC-CHHHHHHHHHH
Confidence 477888899999864 778887 78888877776
No 166
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=23.73 E-value=58 Score=18.03 Aligned_cols=21 Identities=14% Similarity=0.384 Sum_probs=17.2
Q ss_pred HHHHHhhhhCCCHHHHHHHHH
Q psy7603 59 CIKEVNNVVEIPATTTRILLN 79 (130)
Q Consensus 59 ~I~~V~~iL~vs~~~A~lLL~ 79 (130)
.+.+|+..|+|++......|+
T Consensus 33 s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 33 TVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp CHHHHHHHHTSCHHHHHHHHT
T ss_pred CHHHHHHHHCcCHHHHHHHHH
Confidence 467899999999988876664
No 167
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=23.70 E-value=70 Score=18.87 Aligned_cols=44 Identities=20% Similarity=0.207 Sum_probs=29.7
Q ss_pred HHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhcCChhhHHHHcCCCC
Q psy7603 60 IKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYDGDQESSTLDYSAST 108 (130)
Q Consensus 60 I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e~D~~kvl~~aGl~~ 108 (130)
...+..|=+|.+..|+.||.+|+ +.+.| +.. +++.+..-.||-+
T Consensus 13 ~~~L~~i~giG~~~a~~Ll~~fg-s~~~l---~~a-~~~~L~~i~Gig~ 56 (75)
T 1x2i_A 13 RLIVEGLPHVSATLARRLLKHFG-SVERV---FTA-SVAELMKVEGIGE 56 (75)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHHC-SHHHH---HHC-CHHHHTTSTTCCH
T ss_pred HHHHcCCCCCCHHHHHHHHHHcC-CHHHH---HhC-CHHHHhcCCCCCH
Confidence 34567788999999999999983 23333 233 6677666556643
No 168
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structur genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=23.53 E-value=60 Score=23.08 Aligned_cols=46 Identities=13% Similarity=0.278 Sum_probs=35.5
Q ss_pred EEecHHHHHHHHHHH----------HHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 45 EVLSTEEIVQHMIDC----------IKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 45 ~vLs~~eI~~~~~e~----------I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
.-++.+.|...-.+. |.+|+.-+||++. .|.+||+ ||+.|+...+.
T Consensus 23 ~~~tr~~Il~aA~~l~~~~G~~~~s~~~IA~~aGvs~~---tlY~~F~-~K~~L~~a~~~ 78 (211)
T 3fiw_A 23 TKMNRETVITEALDLLDEVGLDGVSTRRLAKRLGVEQP---SLYWYFR-TKRDLLTAMAQ 78 (211)
T ss_dssp -CCCHHHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCTH---HHHTTCS-SHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCChh---HHHHHcC-CHHHHHHHHHH
Confidence 456777777766554 5678888999874 5889998 99999988877
No 169
>2g3b_A Putative TETR-family transcriptional regulator; transcription regulator, structural genomics, P protein structure initiative; HET: MSE; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=23.50 E-value=74 Score=22.00 Aligned_cols=33 Identities=27% Similarity=0.454 Sum_probs=26.4
Q ss_pred HHHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 58 DCIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 58 e~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
-.|++|+.-.||+++ .|.+||+ ||+.|+...++
T Consensus 24 ~s~~~IA~~AGvskg---tlY~hF~-sKe~L~~a~~~ 56 (208)
T 2g3b_A 24 LRVNDVAEVAGVSPG---LLYYHFK-DRIGLLEAALN 56 (208)
T ss_dssp CCHHHHHHHHTSCHH---HHHHHHC-SHHHHHHHHHH
T ss_pred CCHHHHHHHhCCCHH---HHHHHCC-CHHHHHHHHHH
Confidence 347889999999986 4889998 88888876665
No 170
>3ej9_A Alpha-subunit of trans-3-chloroacrylic acid dehal; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej3_A 1s0y_A 3ej7_A
Probab=23.38 E-value=64 Score=19.76 Aligned_cols=34 Identities=6% Similarity=0.098 Sum_probs=26.9
Q ss_pred ecHHHHHHHHHHHHHHHhhhhCCCHHHHHHHHHh
Q psy7603 47 LSTEEIVQHMIDCIKEVNNVVEIPATTTRILLNH 80 (130)
Q Consensus 47 Ls~~eI~~~~~e~I~~V~~iL~vs~~~A~lLL~~ 80 (130)
.|.++..+......+-+..+|++|+....+++..
T Consensus 12 rs~eqK~~L~~~it~~l~~~lg~p~~~v~V~i~E 45 (76)
T 3ej9_A 12 RTDEQKRALSAGLLRVISEATGEPRENIFFVIRE 45 (76)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCCCGGGCEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHCcCcccEEEEEEE
Confidence 5788888888888888889999998766555443
No 171
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=22.48 E-value=99 Score=23.54 Aligned_cols=28 Identities=25% Similarity=0.393 Sum_probs=22.7
Q ss_pred HHHhhhhCCCHHHHHHHHHhCCCChHHHH
Q psy7603 61 KEVNNVVEIPATTTRILLNHFKWDKEKLM 89 (130)
Q Consensus 61 ~~V~~iL~vs~~~A~lLL~~fkWn~ekLl 89 (130)
..+..|=+|.+..|+.||+||+ +.++|.
T Consensus 168 s~LdgIpGIG~k~ak~Ll~~Fg-Sl~~i~ 195 (220)
T 2nrt_A 168 SVLDNVPGIGPIRKKKLIEHFG-SLENIR 195 (220)
T ss_dssp HHHTTSTTCCHHHHHHHHHHHC-SHHHHH
T ss_pred ccccCCCCcCHHHHHHHHHHcC-CHHHHH
Confidence 4566788999999999999998 555554
No 172
>3s5r_A Transcriptional regulator TETR family; DNA/RNA-binding 3-helical bundle, tetracyclin repressor-like structural genomics; 2.60A {Syntrophus aciditrophicus}
Probab=22.39 E-value=98 Score=20.87 Aligned_cols=32 Identities=16% Similarity=0.402 Sum_probs=25.6
Q ss_pred HHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 59 CIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 59 ~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
.|++|+.-.+|+++ .|.+||+ +|+.|+...+.
T Consensus 32 ti~~Ia~~agvs~~---t~Y~~F~-sK~~L~~~~~~ 63 (216)
T 3s5r_A 32 TMAEIAASVGVNPA---MIHYYFK-TRDSLLDTIIE 63 (216)
T ss_dssp CHHHHHHTTTCCHH---HHHHHCS-SHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHH---HHHHHcC-CHHHHHHHHHH
Confidence 46788888999875 4789998 89888877766
No 173
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=22.36 E-value=36 Score=20.90 Aligned_cols=43 Identities=12% Similarity=0.090 Sum_probs=29.2
Q ss_pred HHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhcCChhhHHHHcCCCCC
Q psy7603 62 EVNNVVEIPATTTRILLNHFKWDKEKLMERYYDGDQESSTLDYSASTS 109 (130)
Q Consensus 62 ~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e~D~~kvl~~aGl~~~ 109 (130)
.+..|-+|.+..|+.||.+|+ +.+.|. .. +++.+..-.||-+.
T Consensus 25 ~L~~I~gIG~~~A~~Ll~~fg-sl~~l~---~a-~~eeL~~i~GIG~~ 67 (78)
T 1kft_A 25 SLETIEGVGPKRRQMLLKYMG-GLQGLR---NA-SVEEIAKVPGISQG 67 (78)
T ss_dssp GGGGCTTCSSSHHHHHHHHHS-CHHHHH---HC-CHHHHTTSSSTTSH
T ss_pred HHhcCCCCCHHHHHHHHHHcC-CHHHHH---HC-CHHHHHHCCCCCHH
Confidence 355777888999999999986 444432 33 66777666666543
No 174
>2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix, TETR fold, structural genomics, PSI, prote structure initiative; HET: MSE; 1.52A {Rhodococcus SP}
Probab=22.35 E-value=86 Score=21.92 Aligned_cols=35 Identities=20% Similarity=0.399 Sum_probs=28.2
Q ss_pred HHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhcCChhh
Q psy7603 60 IKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYDGDQES 99 (130)
Q Consensus 60 I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e~D~~k 99 (130)
|++|+.-.||++.. |.+||+ ||+.|+...+. ....
T Consensus 62 v~~IA~~AGvs~~t---lY~~F~-sKe~Ll~av~~-~~~~ 96 (214)
T 2guh_A 62 LKDIAEDAGVSAPL---IIKYFG-SKEQLFDALVD-FRAA 96 (214)
T ss_dssp HHHHHHHHTSCHHH---HHHHHS-SHHHHHHHHTC-CHHH
T ss_pred HHHHHHHhCCCHHH---HHHHcC-CHHHHHHHHHH-HHhh
Confidence 56788888998854 889998 99999999888 5444
No 175
>1upt_B Golgi autoantigen, golgin subfamily A member 4; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: a.193.1.1 PDB: 1r4a_E*
Probab=22.26 E-value=1.1e+02 Score=18.82 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=20.1
Q ss_pred HHHHHHHhhhhCCCHHHHHHHHHh
Q psy7603 57 IDCIKEVNNVVEIPATTTRILLNH 80 (130)
Q Consensus 57 ~e~I~~V~~iL~vs~~~A~lLL~~ 80 (130)
...+.-|..||..+|.+++.+|.+
T Consensus 24 ~~m~kaI~avL~Fs~~e~q~il~~ 47 (60)
T 1upt_B 24 KTMAKVITTVLKFPDDQTQKILER 47 (60)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHH
Confidence 456777899999999999988864
No 176
>3m4a_A Putative type I topoisomerase; type IB, topib, protein-DNA complex, isomerase-DNA complex; HET: DNA; 1.65A {Deinococcus radiodurans} PDB: 2f4q_A*
Probab=22.21 E-value=92 Score=25.44 Aligned_cols=42 Identities=24% Similarity=0.366 Sum_probs=31.5
Q ss_pred cHHHHHHHHHHHHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 48 STEEIVQHMIDCIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 48 s~~eI~~~~~e~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
+..+....+...|.+|+..|+-+|.+|+-=..| -.+++.|-+
T Consensus 259 ~~~~~kk~i~~a~k~VA~~LgNTpaV~R~sYIh-----P~vi~~~~~ 300 (346)
T 3m4a_A 259 SERQAKKVLVDCVKFVADDLGNTPAVTRGSYIC-----PVIFDRYLD 300 (346)
T ss_dssp SHHHHHHHHHHHHHHHHHHHTSCHHHHHHHTSC-----HHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCccchhhhccC-----HHHHHHHHc
Confidence 456677788999999999999999999854333 345555554
No 177
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=22.17 E-value=68 Score=21.01 Aligned_cols=21 Identities=5% Similarity=0.169 Sum_probs=15.4
Q ss_pred HHHHhhhhCCCHHHHHHHHHh
Q psy7603 60 IKEVNNVVEIPATTTRILLNH 80 (130)
Q Consensus 60 I~~V~~iL~vs~~~A~lLL~~ 80 (130)
..+|+.+|+||+...+..|+.
T Consensus 127 ~~EIA~~lgis~~tV~~~~~r 147 (164)
T 3mzy_A 127 YREIATILSKNLKSIDNTIQR 147 (164)
T ss_dssp HHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHH
Confidence 457788888888887766654
No 178
>2oer_A Probable transcriptional regulator; helix-turn-helix, alpha-beta, structural genomics, PSI-2, protein structure initiative; 2.00A {Pseudomonas aeruginosa}
Probab=21.87 E-value=98 Score=21.32 Aligned_cols=32 Identities=16% Similarity=0.235 Sum_probs=24.7
Q ss_pred HHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 59 CIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 59 ~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
.+++|+.-.||+++. |.+||+ ||+.|+...+.
T Consensus 46 s~~~IA~~aGvskgt---lY~yF~-sKe~L~~a~~~ 77 (214)
T 2oer_A 46 TTARVAERAGVSIGS---LYQYFP-NKAAILFRLQS 77 (214)
T ss_dssp CHHHHHHHHTCCHHH---HHHHCS-SHHHHHHHHHH
T ss_pred cHHHHHHHhCCCCch---HHHhCC-CHHHHHHHHHH
Confidence 367888889999865 788998 78887766554
No 179
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=21.83 E-value=68 Score=20.02 Aligned_cols=25 Identities=12% Similarity=0.202 Sum_probs=20.4
Q ss_pred HHHHHhhhhCCCHHHHHHHHHhCCC
Q psy7603 59 CIKEVNNVVEIPATTTRILLNHFKW 83 (130)
Q Consensus 59 ~I~~V~~iL~vs~~~A~lLL~~fkW 83 (130)
.+.+|+..+||++......++.|+=
T Consensus 25 s~~~ia~~~gIs~~tl~rW~~~~~~ 49 (97)
T 2jn6_A 25 SLQQIANDLGINRVTLKNWIIKYGS 49 (97)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHCC
T ss_pred hHHHHHHHHCcCHHHHHHHHHHHhh
Confidence 4789999999999888877777654
No 180
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=21.73 E-value=1e+02 Score=20.62 Aligned_cols=31 Identities=23% Similarity=0.501 Sum_probs=23.2
Q ss_pred HHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 60 IKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 60 I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
|++|+.-.||+++ .|.+||+ +|+.|+...+.
T Consensus 37 i~~Ia~~agvs~~---t~Y~~F~-sK~~Ll~~~~~ 67 (220)
T 3lhq_A 37 LAEIANAAGVTRG---AIYWHFK-NKSDLFSEIWE 67 (220)
T ss_dssp HHHHHHHHTCCHH---HHHHHCS-SHHHHHHHHHH
T ss_pred HHHHHHHhCCCce---eehhhcC-CHHHHHHHHHH
Confidence 6778888888875 4778888 78777666655
No 181
>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis}
Probab=21.72 E-value=64 Score=23.27 Aligned_cols=23 Identities=13% Similarity=0.260 Sum_probs=17.9
Q ss_pred HHHHhhhhCCCHHHHHHHHHhCC
Q psy7603 60 IKEVNNVVEIPATTTRILLNHFK 82 (130)
Q Consensus 60 I~~V~~iL~vs~~~A~lLL~~fk 82 (130)
+.+|+++|+|+....+.|++.-+
T Consensus 34 v~EVAe~LgVs~srV~~LIr~G~ 56 (148)
T 2kfs_A 34 LPRVAELLGVPVSKVAQQLREGH 56 (148)
T ss_dssp HHHHHHHHTCCHHHHHHHHHTTS
T ss_pred HHHHHHHhCCCHHHHHHHHHCCC
Confidence 35568889999999998887543
No 182
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=21.71 E-value=84 Score=21.03 Aligned_cols=27 Identities=19% Similarity=0.550 Sum_probs=22.1
Q ss_pred HHHHHhhhhCCCHHHHHHHHHhCCCChHHHH
Q psy7603 59 CIKEVNNVVEIPATTTRILLNHFKWDKEKLM 89 (130)
Q Consensus 59 ~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLl 89 (130)
.|++|+.-.||+++ .|.+||+ ||+.|+
T Consensus 25 s~~~IA~~agvsk~---t~Y~~F~-sK~~L~ 51 (190)
T 3vpr_A 25 SVQDLAQALGLSKA---ALYHHFG-SKEEIL 51 (190)
T ss_dssp CHHHHHHHHTCCHH---HHHHHHS-SHHHHH
T ss_pred CHHHHHHHhCCCHH---HHHHHcC-CHHHHH
Confidence 36788888899885 4789998 888888
No 183
>4hku_A LMO2814 protein, TETR transcriptional regulator; structural genomics, PSI-biology; 2.30A {Listeria monocytogenes}
Probab=21.67 E-value=40 Score=22.81 Aligned_cols=31 Identities=16% Similarity=0.449 Sum_probs=24.7
Q ss_pred HHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 60 IKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 60 I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
|++|+.-.||+++ .|.+||+ +|+.|+...++
T Consensus 30 ~~~IA~~aGvs~~---tlY~~F~-sKe~L~~a~~~ 60 (178)
T 4hku_A 30 LYDIASNLNVTHA---ALYKHYR-NKEDLFQKLAL 60 (178)
T ss_dssp HHHHHHHTTSCGG---GGGGTCS-SHHHHHHHHHH
T ss_pred HHHHHHHhCcCHh---HHHHHCC-CHHHHHHHHHH
Confidence 6788889999975 4889999 99888766554
No 184
>2gfn_A HTH-type transcriptional regulator PKSA related P; transcriptional regulato PSI-2, regulatory protein, structural genomics, protein STR initiative; 1.90A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=21.59 E-value=1e+02 Score=21.26 Aligned_cols=32 Identities=13% Similarity=0.123 Sum_probs=24.7
Q ss_pred HHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 59 CIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 59 ~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
.+++|+.-.||+++. |.+||+ ||+.|+...++
T Consensus 31 s~~~IA~~aGvs~gt---lY~yF~-sKe~L~~a~~~ 62 (209)
T 2gfn_A 31 TTRAVAEESGWSTGV---LNHYFG-SRHELLLAALR 62 (209)
T ss_dssp CHHHHHHHHSSCHHH---HHHHTS-SHHHHHHHHHH
T ss_pred CHHHHHHHHCCCcch---HHhcCC-CHHHHHHHHHH
Confidence 467888889999864 788887 78888766655
No 185
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=21.46 E-value=84 Score=21.53 Aligned_cols=32 Identities=9% Similarity=0.184 Sum_probs=25.3
Q ss_pred HHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 59 CIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 59 ~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
.|++|+.-.||+++. |.+||+ ||+.|+...+.
T Consensus 30 s~~~IA~~aGvs~~t---iY~~F~-sKe~L~~~v~~ 61 (202)
T 2d6y_A 30 RIDRIAAEARANKQL---IYAYYG-NKGELFASVLE 61 (202)
T ss_dssp CHHHHHHHHTCCHHH---HHHHHS-SHHHHHHHHHH
T ss_pred CHHHHHHHhCCCHHH---HHHHcC-CHHHHHHHHHH
Confidence 467888888998864 778888 88888877766
No 186
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=21.45 E-value=83 Score=18.13 Aligned_cols=21 Identities=24% Similarity=0.257 Sum_probs=17.2
Q ss_pred HHHHHhhhhCCCHHHHHHHHH
Q psy7603 59 CIKEVNNVVEIPATTTRILLN 79 (130)
Q Consensus 59 ~I~~V~~iL~vs~~~A~lLL~ 79 (130)
.+.+|+..|++++...+..++
T Consensus 28 s~~eIA~~l~is~~tV~~~~~ 48 (74)
T 1fse_A 28 TTKEIASELFISEKTVRNHIS 48 (74)
T ss_dssp CHHHHHHHHTSCHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHH
Confidence 467899999999988876655
No 187
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=21.35 E-value=1e+02 Score=20.94 Aligned_cols=32 Identities=22% Similarity=0.222 Sum_probs=25.5
Q ss_pred HHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 59 CIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 59 ~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
.|++|+.-.||++. .|.+||+ ||+.|+...+.
T Consensus 45 t~~~IA~~agvs~~---t~Y~~F~-sK~~L~~~~~~ 76 (214)
T 2zb9_A 45 TFERVARVSGVSKT---TLYKWWP-SKGALALDGYF 76 (214)
T ss_dssp CHHHHHHHHCCCHH---HHHHHCS-SHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHH---HHHHHCC-CHHHHHHHHHH
Confidence 36778888899886 4789998 89888877766
No 188
>3geu_A Intercellular adhesion protein R; TETR family, intercellular adhesion regulator, IDP00851, DNA repressor, transcription; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=21.33 E-value=75 Score=21.14 Aligned_cols=32 Identities=22% Similarity=0.457 Sum_probs=25.1
Q ss_pred HHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 59 CIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 59 ~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
.|++|+.-.||+++. |.+||+ ||+.|+...+.
T Consensus 25 ti~~IA~~agvs~~t---~Y~~F~-sK~~L~~~~~~ 56 (189)
T 3geu_A 25 TLDDIAKSVNIKKAS---LYYHFD-SKKSIYEQSVK 56 (189)
T ss_dssp CHHHHHHHTTCCHHH---HTTTCS-SHHHHHHHHHH
T ss_pred CHHHHHHHhCCCHHH---HHHHhC-CHHHHHHHHHH
Confidence 478888999999854 778888 88888776655
No 189
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=21.26 E-value=37 Score=23.19 Aligned_cols=32 Identities=19% Similarity=0.339 Sum_probs=25.3
Q ss_pred HHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 59 CIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 59 ~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
.|++|+.-.||+++ .|.+||+ ||+.|+...++
T Consensus 36 s~~~Ia~~agvs~~---t~Y~yF~-sKe~L~~~~~~ 67 (203)
T 3ccy_A 36 SIGDIARACECSKS---RLYHYFD-SKEAVLRDMLT 67 (203)
T ss_dssp CHHHHHHHTTCCGG---GGTTTCS-CHHHHHHHHHH
T ss_pred CHHHHHHHhCCCcC---eeeeeeC-CHHHHHHHHHH
Confidence 46788888899875 4788998 89888877665
No 190
>1vi0_A Transcriptional regulator; structural genomics; HET: MSE DCC; 1.65A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=21.07 E-value=1.1e+02 Score=21.06 Aligned_cols=32 Identities=16% Similarity=0.350 Sum_probs=24.3
Q ss_pred HHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 59 CIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 59 ~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
.|++|+.-.||+++. |.+||+ ||+.|+...+.
T Consensus 30 s~~~IA~~AGvs~gt---~Y~yF~-sKe~L~~~v~~ 61 (206)
T 1vi0_A 30 QVSKIAKQAGVADGT---IYLYFK-NKEDILISLFK 61 (206)
T ss_dssp CHHHHHHHHTSCHHH---HHHHCS-SHHHHHHHHHH
T ss_pred CHHHHHHHhCCChhH---HHHHcC-CHHHHHHHHHH
Confidence 467888888998854 778887 78887776655
No 191
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=20.95 E-value=73 Score=20.86 Aligned_cols=23 Identities=13% Similarity=0.219 Sum_probs=18.2
Q ss_pred HHHHHHhhhhCCCHHHHHHHHHh
Q psy7603 58 DCIKEVNNVVEIPATTTRILLNH 80 (130)
Q Consensus 58 e~I~~V~~iL~vs~~~A~lLL~~ 80 (130)
....+|+.+|+||+...+.++..
T Consensus 40 ~s~~EIA~~lgiS~~tVr~~~~r 62 (99)
T 3t72_q 40 YTLEEVGKQFDVTRERIRQIEAK 62 (99)
T ss_pred CCHHHHHHHHCcCHHHHHHHHHH
Confidence 35788899999999988877643
No 192
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=20.91 E-value=70 Score=19.37 Aligned_cols=37 Identities=14% Similarity=0.046 Sum_probs=27.4
Q ss_pred HHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhcCChhhHHHHcCCCC
Q psy7603 61 KEVNNVVEIPATTTRILLNHFKWDKEKLMERYYDGDQESSTLDYSAST 108 (130)
Q Consensus 61 ~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e~D~~kvl~~aGl~~ 108 (130)
..+..|-+|.+..|..|+.++ -|. +.+.+..-.||.+
T Consensus 27 ~~L~~ipGIG~~~A~~Il~~r----------~~~-s~~eL~~v~Gig~ 63 (75)
T 2duy_A 27 EELMALPGIGPVLARRIVEGR----------PYA-RVEDLLKVKGIGP 63 (75)
T ss_dssp HHHTTSTTCCHHHHHHHHHTC----------CCS-SGGGGGGSTTCCH
T ss_pred HHHHhCCCCCHHHHHHHHHHc----------ccC-CHHHHHhCCCCCH
Confidence 345667899999999999987 245 7777776666654
No 193
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, STRU genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=20.88 E-value=78 Score=20.94 Aligned_cols=32 Identities=13% Similarity=0.224 Sum_probs=24.8
Q ss_pred HHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 59 CIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 59 ~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
.|++|+.-.||+++. |.+||+ ||+.|+...+.
T Consensus 30 t~~~Ia~~agvs~~t---~Y~~F~-sK~~L~~~~~~ 61 (183)
T 1zk8_A 30 TLASLAQTLGVRSPS---LYNHVK-GLQDVRKNLGI 61 (183)
T ss_dssp CHHHHHHHHTSCHHH---HTTTCS-SHHHHHHHHHH
T ss_pred CHHHHHHHcCCCchH---HHHHcC-CHHHHHHHHHH
Confidence 467888899999864 678887 88888877665
No 194
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=20.87 E-value=86 Score=20.79 Aligned_cols=31 Identities=23% Similarity=0.341 Sum_probs=24.2
Q ss_pred HHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 60 IKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 60 I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
|++|+.-.||+++. |.+||+ ||+.|+...+.
T Consensus 31 ~~~Ia~~agvs~~t---~Y~~F~-sK~~L~~~~~~ 61 (206)
T 3dew_A 31 IRELAQAAGASISM---ISYHFG-GKEGLYAAVLQ 61 (206)
T ss_dssp HHHHHHHHTCCHHH---HHHHSC-HHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHH---HHHHcC-CHHHHHHHHHH
Confidence 66788888898864 778887 88888777666
No 195
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=20.75 E-value=1.2e+02 Score=20.38 Aligned_cols=32 Identities=6% Similarity=0.236 Sum_probs=24.1
Q ss_pred HHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 59 CIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 59 ~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
.|++|+.-.||+++. |.+||+ ||+.|+...+.
T Consensus 34 t~~~IA~~agvsk~t---lY~~F~-sKe~L~~~~~~ 65 (192)
T 2fq4_A 34 TVDKIAERAKVSKAT---IYKWWP-NKAAVVMDGFL 65 (192)
T ss_dssp CHHHHHHHHTCCHHH---HHHHCS-SHHHHHHHHHH
T ss_pred cHHHHHHHcCCCHHH---HHHHCC-CHHHHHHHHHH
Confidence 367788888998854 788887 88888865543
No 196
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=20.70 E-value=75 Score=21.69 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=16.1
Q ss_pred HHHHHhhhhCCCHHHHHHHHHh
Q psy7603 59 CIKEVNNVVEIPATTTRILLNH 80 (130)
Q Consensus 59 ~I~~V~~iL~vs~~~A~lLL~~ 80 (130)
...+|+.+|+||+...+..|+.
T Consensus 158 s~~EIA~~lgis~~tV~~~l~r 179 (194)
T 1or7_A 158 SYEEIAAIMDCPVGTVRSRIFR 179 (194)
T ss_dssp CHHHHHHHTTSCHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHHH
Confidence 3567888888888887766654
No 197
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=20.65 E-value=52 Score=20.80 Aligned_cols=23 Identities=9% Similarity=0.156 Sum_probs=19.5
Q ss_pred HHHHHhhhhCCCHHHHHHHHHhC
Q psy7603 59 CIKEVNNVVEIPATTTRILLNHF 81 (130)
Q Consensus 59 ~I~~V~~iL~vs~~~A~lLL~~f 81 (130)
-+.+|+..|+|++......++.|
T Consensus 35 s~~~ia~~lgis~~Tv~~w~~~~ 57 (128)
T 1pdn_C 35 RPCVISRQLRVSHGCVSKILNRY 57 (128)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHH
Confidence 36789999999999998888775
No 198
>2pz9_A Putative regulatory protein; structural genomics, transcriptional regulator, PSI, protein structure initiative; 2.80A {Streptomyces coelicolor A3}
Probab=20.61 E-value=1.1e+02 Score=21.26 Aligned_cols=32 Identities=13% Similarity=0.221 Sum_probs=26.2
Q ss_pred HHHHHhhhhCCCHHHHHHHHHhCCCChHHHHHHHhc
Q psy7603 59 CIKEVNNVVEIPATTTRILLNHFKWDKEKLMERYYD 94 (130)
Q Consensus 59 ~I~~V~~iL~vs~~~A~lLL~~fkWn~ekLlE~y~e 94 (130)
.|++|+.-.||++. .|.+||+ ||+.|+...+.
T Consensus 52 s~~~IA~~aGvs~~---tlY~~F~-sK~~L~~a~~~ 83 (226)
T 2pz9_A 52 RVDRIAKQARTSKE---RVYAYFR-SKEALYAHVAE 83 (226)
T ss_dssp CHHHHHHHTTSCHH---HHHHHCS-SHHHHHHHHHH
T ss_pred cHHHHHHHHCCChH---HHHHHcC-CHHHHHHHHHH
Confidence 46788999999986 4778887 89888888776
No 199
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=20.46 E-value=72 Score=20.38 Aligned_cols=21 Identities=24% Similarity=0.512 Sum_probs=16.1
Q ss_pred HHHHhhhhCCCHHHHHHHHHh
Q psy7603 60 IKEVNNVVEIPATTTRILLNH 80 (130)
Q Consensus 60 I~~V~~iL~vs~~~A~lLL~~ 80 (130)
+..++.+|+||+..+..+|.+
T Consensus 33 l~~La~ll~ls~~~vE~~ls~ 53 (84)
T 1ufm_A 33 FEELGALLEIPAAKAEKIASQ 53 (84)
T ss_dssp HHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHH
Confidence 567889999999888765543
Done!