RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7603
         (130 letters)



>d1l8ca_ g.53.1.1 (A:) CREB-binding transcriptional adaptor
          protein CBP (p300) {Mouse (Mus musculus) [TaxId:
          10090]}
          Length = 95

 Score = 29.1 bits (65), Expect = 0.053
 Identities = 8/33 (24%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 50 EEIVQHMIDCIKEVNNVVEIPATTTRILLNHFK 82
          + ++ HM  C       V   A ++R +++H+K
Sbjct: 44 KNVLNHMTHCQAGKACQVAHCA-SSRQIISHWK 75


>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK
          {Thermotoga maritima [TaxId: 2336]}
          Length = 271

 Score = 26.4 bits (57), Expect = 1.2
 Identities = 8/40 (20%), Positives = 16/40 (40%), Gaps = 1/40 (2%)

Query: 51 EIVQHMIDCIKEVNNVVEIPATTTRILLNH-FKWDKEKLM 89
          +I   + DC  ++  V E       ++++      KE L 
Sbjct: 2  KIWSLIRDCSGKLEGVTETSVLEVLLIVSRVLGIRKEDLF 41


>d1j98a_ d.185.1.2 (A:) Autoinducer-2 production protein LuxS
           {Bacillus subtilis [TaxId: 1423]}
          Length = 154

 Score = 25.0 bits (55), Expect = 2.8
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 47  LSTEEIVQHMIDCIKEVNNVVEIPATT 73
            ++ EIV  + D +KE   + EIPA  
Sbjct: 93  TTSAEIVDLLEDTMKEAVEITEIPAAN 119


>d1nria_ c.80.1.3 (A:) Hypothetical protein HI0754 {Haemophilus
          influenzae [TaxId: 727]}
          Length = 248

 Score = 24.7 bits (53), Expect = 4.3
 Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 7/41 (17%)

Query: 28 ENQNPKDRQNDVEEFVFEVLSTEEIVQHMIDCIKEVNNVVE 68
          E +NP            +  ST EIV+ M +  K V   +E
Sbjct: 7  EQRNPNSVD-------IDRQSTLEIVRLMNEEDKLVPLAIE 40


>d2f1fa2 d.58.18.6 (A:78-163) Acetolactate synthase small subunit,
           IlvH {Escherichia coli [TaxId: 562]}
          Length = 86

 Score = 23.8 bits (52), Expect = 4.4
 Identities = 5/30 (16%), Positives = 14/30 (46%)

Query: 40 EEFVFEVLSTEEIVQHMIDCIKEVNNVVEI 69
            +  ++  T   +   +  I++V  +VE+
Sbjct: 41 SLYTVQLAGTSGKLDAFLASIRDVAKIVEV 70


>d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase
          subunit A {Thermotoga maritima [TaxId: 2336]}
          Length = 475

 Score = 24.4 bits (52), Expect = 5.5
 Identities = 4/18 (22%), Positives = 10/18 (55%)

Query: 47 LSTEEIVQHMIDCIKEVN 64
             E++ Q  ++ IK ++
Sbjct: 20 EEREKLPQLSLETIKRLD 37


>d1i40a_ b.40.5.1 (A:) Inorganic pyrophosphatase {Escherichia coli
          [TaxId: 562]}
          Length = 175

 Score = 24.1 bits (52), Expect = 5.9
 Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 3/27 (11%)

Query: 61 KEVNNVVEIPATTTRILLNHFKWDKEK 87
          +++  V+EIPA    I    ++ DKE 
Sbjct: 13 EDIYVVIEIPANADPI---KYEIDKES 36


>d1twla_ b.40.5.1 (A:) Inorganic pyrophosphatase {Pyrococcus
          furiosus [TaxId: 2261]}
          Length = 173

 Score = 24.1 bits (52), Expect = 6.3
 Identities = 7/33 (21%), Positives = 16/33 (48%), Gaps = 4/33 (12%)

Query: 61 KEVNNVVEIPATTTRILLNHFKWDKEKLMERYY 93
          + V  ++EIP  +     N ++ DK+  + +  
Sbjct: 14 EVVYAIIEIPKGSR----NKYELDKKTGLLKLD 42


>d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium
           tuberculosis, GroEL2 [TaxId: 1773]}
          Length = 184

 Score = 24.0 bits (52), Expect = 6.6
 Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 12/43 (27%)

Query: 49  TEEIVQHMIDCIKEVNNVVEIPATTTRILLNHFKWDKEKLMER 91
             + +   +  I++     EI  + +        +D+EKL ER
Sbjct: 147 DTDAIAGRVAQIRQ-----EIENSDS-------DYDREKLQER 177


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.311    0.129    0.365 

Gapped
Lambda     K      H
   0.267   0.0605    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 481,065
Number of extensions: 20280
Number of successful extensions: 63
Number of sequences better than 10.0: 1
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 19
Length of query: 130
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 54
Effective length of database: 1,364,116
Effective search space: 73662264
Effective search space used: 73662264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 48 (22.5 bits)