Query psy7604
Match_columns 118
No_of_seqs 194 out of 1015
Neff 8.1
Searched_HMMs 46136
Date Fri Aug 16 22:37:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7604.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7604hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1815|consensus 99.7 4.9E-17 1.1E-21 127.4 3.7 114 3-118 35-153 (444)
2 KOG1814|consensus 99.6 2.3E-16 5.1E-21 120.2 4.7 87 30-118 181-268 (445)
3 KOG1812|consensus 99.4 1.1E-12 2.4E-17 101.2 6.0 83 31-117 144-228 (384)
4 PF15227 zf-C3HC4_4: zinc fing 99.1 5.5E-11 1.2E-15 64.6 2.1 41 36-83 1-41 (42)
5 KOG0320|consensus 98.9 6.3E-10 1.4E-14 77.0 3.1 58 30-98 128-185 (187)
6 PLN03208 E3 ubiquitin-protein 98.9 1E-09 2.2E-14 77.2 4.2 68 29-100 14-88 (193)
7 PF00097 zf-C3HC4: Zinc finger 98.9 2.1E-09 4.5E-14 57.7 2.9 39 36-83 1-40 (41)
8 KOG0823|consensus 98.8 2E-09 4.3E-14 77.2 1.8 61 30-100 44-104 (230)
9 PF13445 zf-RING_UBOX: RING-ty 98.8 3.6E-09 7.8E-14 57.6 2.3 41 36-82 1-43 (43)
10 PF13923 zf-C3HC4_2: Zinc fing 98.8 3.7E-09 8.1E-14 56.3 2.3 32 36-68 1-32 (39)
11 PF13639 zf-RING_2: Ring finge 98.7 7.2E-09 1.6E-13 56.5 2.1 34 35-68 2-36 (44)
12 KOG0317|consensus 98.6 1.6E-08 3.4E-13 74.7 2.4 52 32-96 238-289 (293)
13 cd00162 RING RING-finger (Real 98.6 3.2E-08 7E-13 53.0 2.9 44 35-89 1-44 (45)
14 PF13920 zf-C3HC4_3: Zinc fing 98.6 2.8E-08 6E-13 55.6 2.6 46 33-91 2-48 (50)
15 PF14634 zf-RING_5: zinc-RING 98.6 4.5E-08 9.8E-13 53.4 2.5 42 35-87 1-43 (44)
16 KOG2164|consensus 98.5 7.2E-08 1.6E-12 76.0 2.3 59 33-99 186-244 (513)
17 smart00504 Ubox Modified RING 98.4 2.7E-07 5.8E-12 53.6 3.6 51 34-97 2-52 (63)
18 PHA02926 zinc finger-like prot 98.4 3.5E-07 7.7E-12 65.6 3.8 56 31-91 168-230 (242)
19 PHA02929 N1R/p28-like protein; 98.4 3.2E-07 6.9E-12 66.9 3.5 50 31-91 172-227 (238)
20 TIGR00599 rad18 DNA repair pro 98.3 4.2E-07 9E-12 70.6 3.3 66 30-110 23-90 (397)
21 smart00184 RING Ring finger. E 98.2 9.3E-07 2E-11 45.5 2.6 30 36-67 1-30 (39)
22 KOG0978|consensus 98.2 4.4E-07 9.5E-12 74.3 1.3 56 31-98 641-696 (698)
23 TIGR00570 cdk7 CDK-activating 98.1 4.9E-06 1.1E-10 62.6 4.8 53 33-96 3-59 (309)
24 KOG0287|consensus 98.1 1.6E-06 3.4E-11 65.8 1.9 65 30-109 20-86 (442)
25 KOG2177|consensus 98.0 1.7E-06 3.8E-11 62.5 1.4 45 31-88 11-55 (386)
26 PF11789 zf-Nse: Zinc-finger o 98.0 4.9E-06 1.1E-10 47.9 2.4 48 32-87 10-57 (57)
27 KOG1002|consensus 97.8 1.2E-05 2.6E-10 64.2 2.3 58 30-95 533-590 (791)
28 KOG0006|consensus 97.8 3.7E-05 8E-10 58.1 4.2 85 29-117 217-310 (446)
29 COG5574 PEX10 RING-finger-cont 97.6 4.8E-05 1E-09 55.9 2.9 53 32-95 214-266 (271)
30 PF04564 U-box: U-box domain; 97.6 8.3E-05 1.8E-09 44.7 3.5 67 32-113 3-69 (73)
31 COG5540 RING-finger-containing 97.5 6.6E-05 1.4E-09 56.4 2.6 53 30-92 320-373 (374)
32 KOG0824|consensus 97.3 0.00011 2.4E-09 55.0 1.7 55 31-97 5-59 (324)
33 PF14570 zf-RING_4: RING/Ubox 97.3 0.00025 5.4E-09 39.3 2.3 44 36-89 1-46 (48)
34 KOG4628|consensus 97.2 0.00017 3.6E-09 55.3 1.6 48 34-91 230-278 (348)
35 COG5432 RAD18 RING-finger-cont 97.2 0.00027 5.9E-09 52.9 2.4 53 31-96 23-75 (391)
36 COG5152 Uncharacterized conser 97.1 0.00021 4.6E-09 50.8 1.2 32 31-64 194-225 (259)
37 PF11793 FANCL_C: FANCL C-term 97.0 0.00034 7.4E-09 41.8 1.6 57 33-92 2-67 (70)
38 PF12678 zf-rbx1: RING-H2 zinc 97.0 0.00055 1.2E-08 41.1 2.3 35 33-67 19-64 (73)
39 KOG1645|consensus 96.9 0.00075 1.6E-08 52.5 2.7 56 32-96 3-61 (463)
40 PF14835 zf-RING_6: zf-RING of 96.9 0.00013 2.8E-09 42.8 -1.1 49 33-96 7-56 (65)
41 KOG1039|consensus 96.9 0.0009 1.9E-08 51.3 2.9 57 29-89 157-219 (344)
42 KOG2879|consensus 96.8 0.0016 3.4E-08 48.4 3.9 54 29-92 235-288 (298)
43 COG5243 HRD1 HRD ubiquitin lig 96.8 0.0013 2.9E-08 50.8 3.2 51 30-91 284-345 (491)
44 KOG1428|consensus 96.8 0.0026 5.6E-08 56.6 5.2 76 31-112 3484-3563(3738)
45 KOG4159|consensus 96.7 0.0016 3.5E-08 50.9 3.3 70 31-117 82-152 (398)
46 KOG0311|consensus 96.5 0.00035 7.7E-09 53.3 -1.2 50 30-90 40-89 (381)
47 KOG0826|consensus 96.2 0.0066 1.4E-07 46.2 3.9 76 4-90 264-347 (357)
48 KOG2660|consensus 96.1 0.0034 7.4E-08 47.6 1.9 50 31-92 13-62 (331)
49 KOG0802|consensus 96.0 0.0039 8.5E-08 50.5 2.2 49 31-90 289-340 (543)
50 COG5175 MOT2 Transcriptional r 96.0 0.0075 1.6E-07 46.3 3.4 58 31-98 12-71 (480)
51 KOG4265|consensus 96.0 0.0073 1.6E-07 46.3 3.3 50 30-92 287-337 (349)
52 KOG4692|consensus 95.9 0.008 1.7E-07 46.3 3.2 38 29-68 418-455 (489)
53 KOG2817|consensus 95.6 0.017 3.6E-07 44.9 3.8 60 31-98 332-392 (394)
54 PF12861 zf-Apc11: Anaphase-pr 95.6 0.015 3.3E-07 36.0 2.9 51 33-91 21-82 (85)
55 KOG4185|consensus 95.2 0.041 8.9E-07 41.0 4.8 59 33-101 3-67 (296)
56 PF05883 Baculo_RING: Baculovi 95.2 0.0094 2E-07 39.9 1.1 80 31-113 24-117 (134)
57 COG5220 TFB3 Cdk activating ki 95.1 0.0062 1.3E-07 44.6 0.0 51 33-91 10-64 (314)
58 PF04641 Rtf2: Rtf2 RING-finge 95.0 0.029 6.2E-07 41.5 3.5 69 30-110 110-180 (260)
59 KOG1785|consensus 94.9 0.012 2.6E-07 46.1 1.2 44 34-86 370-413 (563)
60 KOG1001|consensus 94.8 0.011 2.4E-07 49.2 0.8 52 34-97 455-506 (674)
61 KOG1813|consensus 94.2 0.015 3.2E-07 43.7 0.3 34 32-67 240-273 (313)
62 KOG0828|consensus 94.2 0.032 7E-07 44.7 2.1 53 30-92 568-635 (636)
63 KOG4739|consensus 94.1 0.019 4.2E-07 41.8 0.8 45 34-91 4-48 (233)
64 smart00744 RINGv The RING-vari 94.1 0.058 1.2E-06 29.9 2.5 42 35-83 1-47 (49)
65 KOG1734|consensus 93.8 0.061 1.3E-06 40.2 2.7 57 31-96 222-286 (328)
66 PHA03096 p28-like protein; Pro 93.5 0.049 1.1E-06 40.9 1.9 37 34-70 179-221 (284)
67 PF10367 Vps39_2: Vacuolar sor 93.0 0.032 7E-07 35.1 0.3 33 31-63 76-108 (109)
68 KOG0297|consensus 92.6 0.047 1E-06 42.7 0.8 37 30-68 18-55 (391)
69 KOG0827|consensus 92.6 0.045 9.8E-07 42.7 0.6 51 33-91 4-56 (465)
70 KOG4172|consensus 92.3 0.067 1.5E-06 30.4 1.0 46 34-91 8-54 (62)
71 KOG4367|consensus 92.1 0.066 1.4E-06 42.5 1.1 34 32-67 3-36 (699)
72 KOG1952|consensus 91.4 0.18 3.9E-06 42.9 2.9 55 30-88 188-244 (950)
73 PF10571 UPF0547: Uncharacteri 90.8 0.15 3.3E-06 24.5 1.1 23 35-57 2-24 (26)
74 KOG4445|consensus 90.6 0.2 4.3E-06 38.0 2.2 40 31-70 113-153 (368)
75 KOG3002|consensus 90.3 0.37 8.1E-06 36.5 3.5 30 30-62 45-76 (299)
76 KOG0804|consensus 89.7 0.26 5.7E-06 39.1 2.3 38 30-67 172-211 (493)
77 KOG2034|consensus 89.5 0.22 4.7E-06 42.5 1.8 40 31-70 815-854 (911)
78 KOG3970|consensus 89.1 0.57 1.2E-05 34.3 3.5 56 33-91 50-105 (299)
79 KOG3039|consensus 88.8 0.26 5.6E-06 36.4 1.6 57 31-98 219-277 (303)
80 PF14447 Prok-RING_4: Prokaryo 88.8 0.15 3.3E-06 28.9 0.3 47 33-94 7-53 (55)
81 KOG3579|consensus 88.6 0.48 1E-05 35.7 2.9 64 31-100 266-341 (352)
82 KOG3800|consensus 88.4 0.74 1.6E-05 34.7 3.8 57 35-101 2-62 (300)
83 KOG1941|consensus 88.1 0.2 4.3E-06 39.4 0.6 51 32-91 364-416 (518)
84 PF14445 Prok-RING_2: Prokaryo 87.6 0.095 2.1E-06 29.3 -1.0 35 30-64 4-39 (57)
85 COG5219 Uncharacterized conser 87.6 0.22 4.8E-06 43.2 0.7 52 31-91 1467-1523(1525)
86 KOG3161|consensus 87.4 0.16 3.6E-06 42.1 -0.1 33 33-65 11-45 (861)
87 COG5222 Uncharacterized conser 87.3 1.2 2.5E-05 34.0 4.3 45 33-88 274-318 (427)
88 KOG0825|consensus 87.3 0.15 3.2E-06 43.3 -0.5 19 52-70 120-138 (1134)
89 COG5109 Uncharacterized conser 86.8 0.93 2E-05 34.7 3.5 54 31-92 334-388 (396)
90 PF05290 Baculo_IE-1: Baculovi 86.7 0.71 1.5E-05 31.0 2.6 54 30-91 77-132 (140)
91 KOG4275|consensus 86.4 0.22 4.9E-06 37.6 0.1 27 33-61 300-327 (350)
92 KOG1493|consensus 86.4 0.19 4.1E-06 30.5 -0.3 49 34-90 21-80 (84)
93 KOG3268|consensus 85.8 1.5 3.2E-05 31.1 3.9 59 31-92 163-229 (234)
94 KOG2979|consensus 84.4 1.1 2.5E-05 33.2 2.9 46 34-87 177-222 (262)
95 KOG3053|consensus 80.6 3.2 7E-05 30.9 4.1 56 31-89 18-80 (293)
96 COG5236 Uncharacterized conser 79.0 1.5 3.3E-05 34.1 2.1 33 31-65 59-91 (493)
97 KOG4362|consensus 78.7 0.73 1.6E-05 38.6 0.3 53 31-93 19-71 (684)
98 PF06844 DUF1244: Protein of u 78.4 2.4 5.3E-05 25.0 2.3 19 56-74 11-29 (68)
99 PF13834 DUF4193: Domain of un 77.3 0.91 2E-05 28.9 0.4 34 28-61 65-98 (99)
100 PF14446 Prok-RING_1: Prokaryo 77.2 2.8 6.1E-05 23.7 2.3 34 31-64 3-38 (54)
101 KOG0309|consensus 75.1 3.4 7.4E-05 35.3 3.2 47 32-88 1027-1073(1081)
102 PLN02436 cellulose synthase A 74.9 2.5 5.5E-05 37.2 2.5 50 32-91 35-89 (1094)
103 PLN02189 cellulose synthase 74.6 2.6 5.5E-05 37.1 2.4 51 31-91 32-87 (1040)
104 KOG3039|consensus 73.8 3.6 7.7E-05 30.6 2.7 36 34-71 44-79 (303)
105 PLN02638 cellulose synthase A 73.6 4.8 0.0001 35.6 3.8 50 31-90 15-69 (1079)
106 PHA02825 LAP/PHD finger-like p 71.3 6 0.00013 27.4 3.2 51 30-91 5-59 (162)
107 PF01363 FYVE: FYVE zinc finge 70.7 0.84 1.8E-05 26.5 -0.9 36 31-66 7-44 (69)
108 PLN02915 cellulose synthase A 69.8 6.3 0.00014 34.8 3.7 52 30-91 12-68 (1044)
109 cd00065 FYVE FYVE domain; Zinc 69.0 4.1 8.8E-05 22.5 1.7 35 34-68 3-39 (57)
110 PF14569 zf-UDP: Zinc-binding 67.3 5.6 0.00012 24.2 2.1 50 31-90 7-61 (80)
111 KOG0801|consensus 66.8 2.6 5.6E-05 29.4 0.7 28 30-57 174-202 (205)
112 PF10497 zf-4CXXC_R1: Zinc-fin 65.7 17 0.00036 23.2 4.3 36 54-91 37-72 (105)
113 PF08746 zf-RING-like: RING-li 65.0 3.7 8.1E-05 21.9 1.0 34 36-69 1-35 (43)
114 COG5194 APC11 Component of SCF 65.0 6.5 0.00014 24.1 2.1 37 33-69 31-70 (88)
115 smart00064 FYVE Protein presen 64.8 7.2 0.00016 22.3 2.3 37 33-69 10-48 (68)
116 PLN02195 cellulose synthase A 64.7 6.5 0.00014 34.4 2.8 50 32-91 5-59 (977)
117 PF12906 RINGv: RING-variant d 64.4 5 0.00011 21.8 1.4 34 36-69 1-39 (47)
118 KOG2789|consensus 64.1 2.6 5.6E-05 33.3 0.4 37 29-65 70-106 (482)
119 KOG2114|consensus 63.8 4.2 9.1E-05 35.0 1.5 41 33-88 840-880 (933)
120 PF07191 zinc-ribbons_6: zinc- 63.6 0.3 6.6E-06 29.1 -3.8 40 34-91 2-41 (70)
121 COG3492 Uncharacterized protei 62.0 7.5 0.00016 24.4 2.0 15 56-70 42-56 (104)
122 PF02318 FYVE_2: FYVE-type zin 61.6 3.3 7.2E-05 26.8 0.5 33 32-64 53-88 (118)
123 KOG2930|consensus 60.1 6 0.00013 25.5 1.4 18 52-69 80-97 (114)
124 KOG1940|consensus 59.5 7.3 0.00016 29.3 2.0 48 30-88 155-204 (276)
125 PF02891 zf-MIZ: MIZ/SP-RING z 59.5 7.4 0.00016 21.4 1.6 47 34-88 3-49 (50)
126 PLN02400 cellulose synthase 58.4 5.1 0.00011 35.5 1.1 50 32-91 35-89 (1085)
127 PF14471 DUF4428: Domain of un 57.3 11 0.00024 20.9 2.1 30 35-65 1-30 (51)
128 PF00412 LIM: LIM domain; Int 56.2 11 0.00023 20.6 1.9 33 31-64 24-56 (58)
129 PF07975 C1_4: TFIIH C1-like d 54.8 6.3 0.00014 22.0 0.8 12 51-62 25-36 (51)
130 KOG0298|consensus 53.7 4.9 0.00011 36.2 0.3 39 31-70 1151-1189(1394)
131 PF10426 zf-RAG1: Recombinatio 53.1 8.3 0.00018 19.1 1.0 22 78-99 2-23 (30)
132 PF07800 DUF1644: Protein of u 52.8 6.2 0.00013 27.3 0.6 36 33-70 2-50 (162)
133 KOG2932|consensus 51.9 6.5 0.00014 30.2 0.7 31 33-65 90-121 (389)
134 PF02148 zf-UBP: Zn-finger in 51.2 11 0.00024 21.5 1.5 32 36-68 1-36 (63)
135 KOG0825|consensus 49.8 21 0.00045 31.0 3.3 51 33-94 123-174 (1134)
136 KOG1571|consensus 48.6 14 0.00031 28.7 2.1 45 31-91 303-347 (355)
137 TIGR02159 PA_CoA_Oxy4 phenylac 47.8 13 0.00028 25.2 1.6 57 8-64 78-139 (146)
138 PF15616 TerY-C: TerY-C metal 46.6 10 0.00022 25.3 0.9 43 33-94 77-119 (131)
139 PF06467 zf-FCS: MYM-type Zinc 46.6 14 0.00031 19.0 1.4 36 30-65 3-43 (43)
140 KOG2807|consensus 46.1 12 0.00026 28.9 1.4 45 32-87 329-374 (378)
141 PF13240 zinc_ribbon_2: zinc-r 43.6 15 0.00033 16.8 1.0 9 36-44 2-10 (23)
142 PF13124 DUF3963: Protein of u 43.0 4.6 0.0001 20.9 -0.9 14 1-15 9-22 (40)
143 PHA02862 5L protein; Provision 40.4 38 0.00081 23.2 2.9 48 34-91 3-53 (156)
144 KOG1100|consensus 38.1 11 0.00024 27.0 0.1 24 36-61 161-185 (207)
145 KOG2857|consensus 37.5 16 0.00035 24.8 0.8 33 33-67 5-38 (157)
146 PF06906 DUF1272: Protein of u 37.1 29 0.00064 19.8 1.7 45 34-91 6-52 (57)
147 smart00647 IBR In Between Ring 36.8 40 0.00087 18.5 2.3 16 78-93 18-33 (64)
148 KOG0006|consensus 35.3 19 0.00041 27.9 1.0 16 52-67 341-356 (446)
149 PF01485 IBR: IBR domain; Int 35.0 7.8 0.00017 21.5 -0.9 12 52-63 45-56 (64)
150 KOG0129|consensus 33.9 21 0.00045 29.1 1.0 35 30-64 452-491 (520)
151 smart00734 ZnF_Rad18 Rad18-lik 33.8 23 0.0005 16.6 0.8 19 79-99 2-20 (26)
152 COG4647 AcxC Acetone carboxyla 33.7 17 0.00036 24.5 0.4 20 38-59 62-81 (165)
153 cd07922 CarBa CarBa is the A s 32.3 14 0.00031 22.5 -0.1 19 2-21 21-39 (81)
154 PF09889 DUF2116: Uncharacteri 32.1 58 0.0012 18.7 2.4 29 34-70 4-33 (59)
155 KOG3113|consensus 31.9 47 0.001 24.9 2.5 69 31-112 109-179 (293)
156 COG5112 UFD2 U1-like Zn-finger 31.2 42 0.00091 21.8 1.9 23 48-70 48-70 (126)
157 cd02249 ZZ Zinc finger, ZZ typ 31.1 40 0.00088 17.8 1.6 31 35-65 2-33 (46)
158 PF14319 Zn_Tnp_IS91: Transpos 30.6 16 0.00034 23.6 -0.2 53 31-92 40-96 (111)
159 KOG3799|consensus 30.3 30 0.00066 23.4 1.2 20 31-55 63-82 (169)
160 PF13248 zf-ribbon_3: zinc-rib 29.8 35 0.00076 15.8 1.1 9 35-43 4-12 (26)
161 PF00643 zf-B_box: B-box zinc 29.2 38 0.00083 17.2 1.3 30 33-64 3-32 (42)
162 PF10170 C6_DPF: Cysteine-rich 27.7 57 0.0012 20.7 2.0 36 33-68 49-84 (97)
163 PF08882 Acetone_carb_G: Aceto 27.5 25 0.00054 22.9 0.4 12 48-59 24-35 (112)
164 PF09538 FYDLN_acid: Protein o 27.2 62 0.0014 20.8 2.2 15 77-93 25-39 (108)
165 cd07321 Extradiol_Dioxygenase_ 26.7 27 0.00059 20.9 0.5 19 2-21 20-38 (77)
166 smart00290 ZnF_UBP Ubiquitin C 26.7 38 0.00083 17.9 1.0 24 36-61 2-25 (50)
167 PF01530 zf-C2HC: Zinc finger, 26.6 29 0.00062 17.3 0.4 11 79-89 2-12 (31)
168 PF04423 Rad50_zn_hook: Rad50 26.5 53 0.0011 18.0 1.6 19 80-100 22-40 (54)
169 COG1996 RPC10 DNA-directed RNA 26.3 14 0.00031 20.4 -0.7 27 57-90 8-34 (49)
170 PF03854 zf-P11: P-11 zinc fin 25.9 27 0.00059 19.3 0.3 31 51-92 16-47 (50)
171 KOG2231|consensus 25.6 58 0.0013 27.7 2.3 47 35-88 2-49 (669)
172 PF12660 zf-TFIIIC: Putative z 25.3 21 0.00045 22.5 -0.3 50 34-91 15-66 (99)
173 PLN02248 cellulose synthase-li 24.9 56 0.0012 29.4 2.2 54 31-95 122-181 (1135)
174 COG4098 comFA Superfamily II D 24.7 35 0.00077 26.9 0.9 34 29-63 35-68 (441)
175 PF10186 Atg14: UV radiation r 24.7 77 0.0017 23.1 2.6 24 35-68 1-24 (302)
176 PF13963 Transpos_assoc: Trans 24.7 1E+02 0.0022 18.2 2.7 34 63-96 22-57 (77)
177 KOG2594|consensus 23.4 62 0.0013 25.5 1.9 21 51-71 28-48 (396)
178 KOG2068|consensus 22.4 60 0.0013 25.1 1.7 31 33-63 249-281 (327)
179 PF10764 Gin: Inhibitor of sig 22.4 51 0.0011 17.8 1.0 33 35-70 1-33 (46)
180 PF14353 CpXC: CpXC protein 22.2 83 0.0018 20.3 2.2 47 34-90 2-48 (128)
181 TIGR00622 ssl1 transcription f 22.0 86 0.0019 20.4 2.1 44 33-87 55-110 (112)
182 PRK11088 rrmA 23S rRNA methylt 21.0 55 0.0012 23.9 1.2 24 34-57 3-27 (272)
183 smart00291 ZnF_ZZ Zinc-binding 20.4 1.2E+02 0.0025 15.8 2.2 31 33-63 4-35 (44)
No 1
>KOG1815|consensus
Probab=99.66 E-value=4.9e-17 Score=127.37 Aligned_cols=114 Identities=37% Similarity=0.598 Sum_probs=88.4
Q ss_pred cccCCChhHHHHHcCcCCCCCCC---CCC--CCCCccccccccccCCCCCcccCCCCccchHHHHHHHHHHHhhhcCCce
Q psy7604 3 RYYDGDQEQLFAEARVINPLVKN---SQP--STSSKSKCEICFTNMPSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQ 77 (118)
Q Consensus 3 ~y~~~~~~~~~~~~gl~~~~~~~---~~~--~~~~~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~ 77 (118)
.+|.||.++++.+..-....... ... ......+|+||++.++. .+..+.|||.||..||..|+..+|. +|...
T Consensus 35 ~~~~W~~~kl~~~~~~~~~~~~~~~g~~~~~~~~~~~~c~ic~~~~~~-~~~~~~c~H~~c~~cw~~yl~~kI~-~~~~~ 112 (444)
T KOG1815|consen 35 AHFCWNVEKLLEEWVEDEETGCFFVGLLLWPKKKGDVQCGICVESYDG-EIIGLGCGHPFCPPCWTGYLGTKIH-EGEEA 112 (444)
T ss_pred HhcCcchHHHHHHHHhcCcchhhhccccccCCCCccccCCcccCCCcc-hhhhcCCCcHHHHHHHHHHhhheee-ccccc
Confidence 45677777777765421111100 011 23567899999999854 6788899999999999999999996 55544
Q ss_pred eeecCCccccccccHHHHhcccCChHHHHHHHHHHHhcccC
Q psy7604 78 TIACAAHGCNILVDDGTVMRLVRDPKVKLKYQHLITNSFVE 118 (118)
Q Consensus 78 ~i~CP~~~C~~~i~~~~i~~ll~~~~~~~ky~~~~~~~yve 118 (118)
.|+||..+|...+..++|..++++++..++|+++++++|||
T Consensus 113 ~i~cp~~~C~a~v~~~~i~~~~s~~~~~~ky~~~i~~syve 153 (444)
T KOG1815|consen 113 KIKCPAHGCPALVGEDTVEKLVSDKEDKEKYQRYILRSYVE 153 (444)
T ss_pred cccCCCCCccccCCCceeeeecCCHHHHHHHHHHHHHHHHh
Confidence 49999999999999999999998545899999999999996
No 2
>KOG1814|consensus
Probab=99.63 E-value=2.3e-16 Score=120.20 Aligned_cols=87 Identities=30% Similarity=0.581 Sum_probs=78.2
Q ss_pred CCCccccccccccCCCC-CcccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCccccccccHHHHhcccCChHHHHHH
Q psy7604 30 TSSKSKCEICFTNMPST-LMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGTVMRLVRDPKVKLKY 108 (118)
Q Consensus 30 ~~~~~~C~IC~~~~~~~-~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~~~~i~~ll~~~~~~~ky 108 (118)
..+.+.|.|||++..+. .+..++|+|.||+.|++.|.+..|+ +|++..++||+.+|+...++.+++.+|+ .++++||
T Consensus 181 ~~slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~-eg~v~~l~Cp~~~C~~~a~~g~vKelvg-~EL~arY 258 (445)
T KOG1814|consen 181 VNSLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQ-EGQVSCLKCPDPKCGSVAPPGQVKELVG-DELFARY 258 (445)
T ss_pred HhhcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhh-cceeeeecCCCCCCcccCCchHHHHHHH-HHHHHHH
Confidence 45678999999998763 4778999999999999999999996 8988999999999999999999999998 4899999
Q ss_pred HHHHHhcccC
Q psy7604 109 QHLITNSFVE 118 (118)
Q Consensus 109 ~~~~~~~yve 118 (118)
+++++++-+|
T Consensus 259 e~l~lqk~l~ 268 (445)
T KOG1814|consen 259 EKLMLQKTLE 268 (445)
T ss_pred HHHHHHHHHH
Confidence 9999887553
No 3
>KOG1812|consensus
Probab=99.36 E-value=1.1e-12 Score=101.21 Aligned_cols=83 Identities=28% Similarity=0.669 Sum_probs=70.2
Q ss_pred CCccccccccccCCCC-Ccc-cCCCCccchHHHHHHHHHHHhhhcCCceeeecCCccccccccHHHHhcccCChHHHHHH
Q psy7604 31 SSKSKCEICFTNMPST-LMT-GLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGTVMRLVRDPKVKLKY 108 (118)
Q Consensus 31 ~~~~~C~IC~~~~~~~-~~~-~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~~~~i~~ll~~~~~~~ky 108 (118)
....+|.||+.+.+.. .+. ...|+|.||.+||++|++.+.. +| ..++||..+|+..++.+....+|+ +++.++|
T Consensus 144 ~~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~-~~--~~~~C~~~~C~~~l~~~~c~~llt-~kl~e~~ 219 (384)
T KOG1812|consen 144 LPKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLL-SG--TVIRCPHDGCESRLTLESCRKLLT-PKLREMW 219 (384)
T ss_pred cccccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhc-cC--CCccCCCCCCCccCCHHHHhhhcC-HHHHHHH
Confidence 3577999999655433 343 4799999999999999999953 44 579999999999999999999998 7899999
Q ss_pred HHHHHhccc
Q psy7604 109 QHLITNSFV 117 (118)
Q Consensus 109 ~~~~~~~yv 117 (118)
++++.+.||
T Consensus 220 e~~~~e~~i 228 (384)
T KOG1812|consen 220 EQRLKEEVI 228 (384)
T ss_pred HHHHHHHhh
Confidence 999988876
No 4
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.09 E-value=5.5e-11 Score=64.60 Aligned_cols=41 Identities=27% Similarity=0.712 Sum_probs=29.6
Q ss_pred cccccccCCCCCcccCCCCccchHHHHHHHHHHHhhhcCCceeeecCC
Q psy7604 36 CEICFTNMPSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAA 83 (118)
Q Consensus 36 C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~ 83 (118)
|+||++-+ .+++++.|||.||..|+.+++... ++ ..+.||.
T Consensus 1 CpiC~~~~--~~Pv~l~CGH~FC~~Cl~~~~~~~---~~--~~~~CP~ 41 (42)
T PF15227_consen 1 CPICLDLF--KDPVSLPCGHSFCRSCLERLWKEP---SG--SGFSCPE 41 (42)
T ss_dssp ETTTTSB---SSEEE-SSSSEEEHHHHHHHHCCS---SS--ST---SS
T ss_pred CCccchhh--CCccccCCcCHHHHHHHHHHHHcc---CC--cCCCCcC
Confidence 89999998 788999999999999999998743 22 2378984
No 5
>KOG0320|consensus
Probab=98.94 E-value=6.3e-10 Score=76.99 Aligned_cols=58 Identities=26% Similarity=0.645 Sum_probs=45.7
Q ss_pred CCCccccccccccCCCCCcccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCccccccccHHHHhcc
Q psy7604 30 TSSKSKCEICFTNMPSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGTVMRL 98 (118)
Q Consensus 30 ~~~~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~~~~i~~l 98 (118)
+...+.||||++.+.....++..|||.||+.|++.-+.. ..+||. |+..|+..++..+
T Consensus 128 ~~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~---------~~~CP~--C~kkIt~k~~~rI 185 (187)
T KOG0320|consen 128 KEGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKN---------TNKCPT--CRKKITHKQFHRI 185 (187)
T ss_pred cccccCCCceecchhhccccccccchhHHHHHHHHHHHh---------CCCCCC--cccccchhhheec
Confidence 345689999999997666788999999999999887763 247995 8878887776544
No 6
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.93 E-value=1e-09 Score=77.22 Aligned_cols=68 Identities=18% Similarity=0.415 Sum_probs=50.4
Q ss_pred CCCCccccccccccCCCCCcccCCCCccchHHHHHHHHHHHhhh-------cCCceeeecCCccccccccHHHHhcccC
Q psy7604 29 STSSKSKCEICFTNMPSTLMTGLECSHRFCTQCWCEYLTTKIIQ-------EGMGQTIACAAHGCNILVDDGTVMRLVR 100 (118)
Q Consensus 29 ~~~~~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y~~~~i~~-------~g~~~~i~CP~~~C~~~i~~~~i~~ll~ 100 (118)
.....++|+||++.+ .+.+.+.|||.||..|+..|+...-.. .......+||. |+..++...+..+..
T Consensus 14 ~~~~~~~CpICld~~--~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPv--CR~~Is~~~LvPiyg 88 (193)
T PLN03208 14 DSGGDFDCNICLDQV--RDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPV--CKSDVSEATLVPIYG 88 (193)
T ss_pred cCCCccCCccCCCcC--CCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCC--CCCcCChhcEEEeec
Confidence 345678999999986 566778999999999999998642100 00113579995 999999988877664
No 7
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.86 E-value=2.1e-09 Score=57.65 Aligned_cols=39 Identities=28% Similarity=0.755 Sum_probs=31.5
Q ss_pred cccccccCCCCCc-ccCCCCccchHHHHHHHHHHHhhhcCCceeeecCC
Q psy7604 36 CEICFTNMPSTLM-TGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAA 83 (118)
Q Consensus 36 C~IC~~~~~~~~~-~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~ 83 (118)
|+||++.+ .+. ..++|||.||..|+.+++.. . ..++||.
T Consensus 1 C~iC~~~~--~~~~~~~~C~H~fC~~C~~~~~~~--~-----~~~~CP~ 40 (41)
T PF00097_consen 1 CPICLEPF--EDPVILLPCGHSFCRDCLRKWLEN--S-----GSVKCPL 40 (41)
T ss_dssp ETTTSSBC--SSEEEETTTSEEEEHHHHHHHHHH--T-----SSSBTTT
T ss_pred CCcCCccc--cCCCEEecCCCcchHHHHHHHHHh--c-----CCccCCc
Confidence 89999987 334 47899999999999999997 1 2467984
No 8
>KOG0823|consensus
Probab=98.80 E-value=2e-09 Score=77.23 Aligned_cols=61 Identities=26% Similarity=0.457 Sum_probs=51.1
Q ss_pred CCCccccccccccCCCCCcccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCccccccccHHHHhcccC
Q psy7604 30 TSSKSKCEICFTNMPSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGTVMRLVR 100 (118)
Q Consensus 30 ~~~~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~~~~i~~ll~ 100 (118)
....++|.||+|.- .+.+...|||.||+.|+.+|+.++-. .-.|| .|+..|+.+.|..|..
T Consensus 44 ~~~~FdCNICLd~a--kdPVvTlCGHLFCWpClyqWl~~~~~------~~~cP--VCK~~Vs~~~vvPlYG 104 (230)
T KOG0823|consen 44 DGGFFDCNICLDLA--KDPVVTLCGHLFCWPCLYQWLQTRPN------SKECP--VCKAEVSIDTVVPLYG 104 (230)
T ss_pred CCCceeeeeecccc--CCCEEeecccceehHHHHHHHhhcCC------CeeCC--ccccccccceEEeeec
Confidence 46789999999985 67888999999999999999998742 24689 5999999988877763
No 9
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.79 E-value=3.6e-09 Score=57.64 Aligned_cols=41 Identities=24% Similarity=0.592 Sum_probs=22.8
Q ss_pred cccccccCCC-C-CcccCCCCccchHHHHHHHHHHHhhhcCCceeeecC
Q psy7604 36 CEICFTNMPS-T-LMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACA 82 (118)
Q Consensus 36 C~IC~~~~~~-~-~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP 82 (118)
|+||.+ +.. + .+..|.|||.||++|+.+.+.... ...++||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~-----~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSD-----RNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S------S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCC-----CCeeeCc
Confidence 899999 632 2 356789999999999999998643 1368898
No 10
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.79 E-value=3.7e-09 Score=56.28 Aligned_cols=32 Identities=31% Similarity=0.866 Sum_probs=25.9
Q ss_pred cccccccCCCCCcccCCCCccchHHHHHHHHHH
Q psy7604 36 CEICFTNMPSTLMTGLECSHRFCTQCWCEYLTT 68 (118)
Q Consensus 36 C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y~~~ 68 (118)
|+||++.+. +..+.+.|||.||.+||.+|++.
T Consensus 1 C~iC~~~~~-~~~~~~~CGH~fC~~C~~~~~~~ 32 (39)
T PF13923_consen 1 CPICLDELR-DPVVVTPCGHSFCKECIEKYLEK 32 (39)
T ss_dssp ETTTTSB-S-SEEEECTTSEEEEHHHHHHHHHC
T ss_pred CCCCCCccc-CcCEECCCCCchhHHHHHHHHHC
Confidence 899999873 23367999999999999999873
No 11
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.72 E-value=7.2e-09 Score=56.49 Aligned_cols=34 Identities=29% Similarity=0.725 Sum_probs=29.4
Q ss_pred ccccccccCC-CCCcccCCCCccchHHHHHHHHHH
Q psy7604 35 KCEICFTNMP-STLMTGLECSHRFCTQCWCEYLTT 68 (118)
Q Consensus 35 ~C~IC~~~~~-~~~~~~l~CgH~fC~~C~~~y~~~ 68 (118)
+|+||++++. ...++.++|||.||.+|+.+|+..
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~ 36 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR 36 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh
Confidence 6999999995 345677899999999999999974
No 12
>KOG0317|consensus
Probab=98.64 E-value=1.6e-08 Score=74.71 Aligned_cols=52 Identities=27% Similarity=0.665 Sum_probs=44.0
Q ss_pred CccccccccccCCCCCcccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCccccccccHHHHh
Q psy7604 32 SKSKCEICFTNMPSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGTVM 96 (118)
Q Consensus 32 ~~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~~~~i~ 96 (118)
....|.+|++.. .++...+|||.||..|+.+|...+- .||. |+..++++.|.
T Consensus 238 a~~kC~LCLe~~--~~pSaTpCGHiFCWsCI~~w~~ek~---------eCPl--CR~~~~pskvi 289 (293)
T KOG0317|consen 238 ATRKCSLCLENR--SNPSATPCGHIFCWSCILEWCSEKA---------ECPL--CREKFQPSKVI 289 (293)
T ss_pred CCCceEEEecCC--CCCCcCcCcchHHHHHHHHHHcccc---------CCCc--ccccCCCccee
Confidence 357899999996 6788899999999999999998652 2995 99999988764
No 13
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.63 E-value=3.2e-08 Score=52.98 Aligned_cols=44 Identities=30% Similarity=0.803 Sum_probs=32.8
Q ss_pred ccccccccCCCCCcccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCcccccc
Q psy7604 35 KCEICFTNMPSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNIL 89 (118)
Q Consensus 35 ~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~ 89 (118)
+|+||++.+ ........|||.||..|+..|+.. + ..+||. |+..
T Consensus 1 ~C~iC~~~~-~~~~~~~~C~H~~c~~C~~~~~~~-----~---~~~Cp~--C~~~ 44 (45)
T cd00162 1 ECPICLEEF-REPVVLLPCGHVFCRSCIDKWLKS-----G---KNTCPL--CRTP 44 (45)
T ss_pred CCCcCchhh-hCceEecCCCChhcHHHHHHHHHh-----C---cCCCCC--CCCc
Confidence 599999987 233444569999999999999874 1 357994 7754
No 14
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.62 E-value=2.8e-08 Score=55.62 Aligned_cols=46 Identities=30% Similarity=0.710 Sum_probs=36.0
Q ss_pred ccccccccccCCCCCcccCCCCcc-chHHHHHHHHHHHhhhcCCceeeecCCcccccccc
Q psy7604 33 KSKCEICFTNMPSTLMTGLECSHR-FCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVD 91 (118)
Q Consensus 33 ~~~C~IC~~~~~~~~~~~l~CgH~-fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~ 91 (118)
...|.||++.. .+.+.++|||. ||..|+.+++. . ..+||. |+..|.
T Consensus 2 ~~~C~iC~~~~--~~~~~~pCgH~~~C~~C~~~~~~---~------~~~CP~--Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENP--RDVVLLPCGHLCFCEECAERLLK---R------KKKCPI--CRQPIE 48 (50)
T ss_dssp HSB-TTTSSSB--SSEEEETTCEEEEEHHHHHHHHH---T------TSBBTT--TTBB-S
T ss_pred cCCCccCCccC--CceEEeCCCChHHHHHHhHHhcc---c------CCCCCc--CChhhc
Confidence 46799999985 55777899999 99999999998 1 247995 988765
No 15
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.57 E-value=4.5e-08 Score=53.43 Aligned_cols=42 Identities=26% Similarity=0.735 Sum_probs=33.0
Q ss_pred ccccccccCC-CCCcccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCcccc
Q psy7604 35 KCEICFTNMP-STLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCN 87 (118)
Q Consensus 35 ~C~IC~~~~~-~~~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~ 87 (118)
.|+||++.+. ...+..+.|||.||..|+.... . ..+.||. |+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~----~-----~~~~CP~--C~ 43 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK----G-----KSVKCPI--CR 43 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc----C-----CCCCCcC--CC
Confidence 4999999983 2356778999999999998877 1 2578995 65
No 16
>KOG2164|consensus
Probab=98.47 E-value=7.2e-08 Score=75.96 Aligned_cols=59 Identities=20% Similarity=0.568 Sum_probs=46.6
Q ss_pred ccccccccccCCCCCcccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCccccccccHHHHhccc
Q psy7604 33 KSKCEICFTNMPSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGTVMRLV 99 (118)
Q Consensus 33 ~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~~~~i~~ll 99 (118)
...||||++.- .....+.|||.||..|+.+||..... . ....||. |...|...++..+.
T Consensus 186 ~~~CPICL~~~--~~p~~t~CGHiFC~~CiLqy~~~s~~-~---~~~~CPi--C~s~I~~kdl~pv~ 244 (513)
T KOG2164|consen 186 DMQCPICLEPP--SVPVRTNCGHIFCGPCILQYWNYSAI-K---GPCSCPI--CRSTITLKDLLPVF 244 (513)
T ss_pred CCcCCcccCCC--CcccccccCceeeHHHHHHHHhhhcc-c---CCccCCc--hhhhccccceeeee
Confidence 78899999985 23444579999999999999998731 2 4689995 99999887776654
No 17
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.44 E-value=2.7e-07 Score=53.57 Aligned_cols=51 Identities=10% Similarity=0.075 Sum_probs=40.6
Q ss_pred cccccccccCCCCCcccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCccccccccHHHHhc
Q psy7604 34 SKCEICFTNMPSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGTVMR 97 (118)
Q Consensus 34 ~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~~~~i~~ 97 (118)
+.|+||.+.+ .+++.+.|||.||+.|+.+|+.. . ..||. |+..++.+++..
T Consensus 2 ~~Cpi~~~~~--~~Pv~~~~G~v~~~~~i~~~~~~----~-----~~cP~--~~~~~~~~~l~~ 52 (63)
T smart00504 2 FLCPISLEVM--KDPVILPSGQTYERRAIEKWLLS----H-----GTDPV--TGQPLTHEDLIP 52 (63)
T ss_pred cCCcCCCCcC--CCCEECCCCCEEeHHHHHHHHHH----C-----CCCCC--CcCCCChhhcee
Confidence 5799999987 45677899999999999999974 1 36995 788887666554
No 18
>PHA02926 zinc finger-like protein; Provisional
Probab=98.38 E-value=3.5e-07 Score=65.64 Aligned_cols=56 Identities=25% Similarity=0.552 Sum_probs=40.8
Q ss_pred CCccccccccccCCC-----C--CcccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCcccccccc
Q psy7604 31 SSKSKCEICFTNMPS-----T--LMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVD 91 (118)
Q Consensus 31 ~~~~~C~IC~~~~~~-----~--~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~ 91 (118)
+.+.+|+||++.... . ..+..+|+|.||..|+..|...+- +.| ..-.||. |+..+.
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~-~~~--~~rsCPi--CR~~f~ 230 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRR-ETG--ASDNCPI--CRTRFR 230 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhcc-ccC--cCCcCCC--Ccceee
Confidence 567899999998521 1 134569999999999999999753 223 3467995 987654
No 19
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.38 E-value=3.2e-07 Score=66.85 Aligned_cols=50 Identities=22% Similarity=0.513 Sum_probs=37.1
Q ss_pred CCccccccccccCCCCC------cccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCcccccccc
Q psy7604 31 SSKSKCEICFTNMPSTL------MTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVD 91 (118)
Q Consensus 31 ~~~~~C~IC~~~~~~~~------~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~ 91 (118)
+...+|+||++.+...+ .+.+.|+|.||..|+.+|+.. ...||. |+..+.
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~---------~~tCPl--CR~~~~ 227 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE---------KNTCPV--CRTPFI 227 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc---------CCCCCC--CCCEee
Confidence 45679999999864322 244689999999999998752 137995 987665
No 20
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.33 E-value=4.2e-07 Score=70.58 Aligned_cols=66 Identities=21% Similarity=0.498 Sum_probs=47.3
Q ss_pred CCCccccccccccCCCCCcccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCccccccccHHHHhc--ccCChHHHHH
Q psy7604 30 TSSKSKCEICFTNMPSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGTVMR--LVRDPKVKLK 107 (118)
Q Consensus 30 ~~~~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~~~~i~~--ll~~~~~~~k 107 (118)
....+.|+||.+.+ ...+.+.|||.||..|+..|+.. ...|| .|+..+....+.. +| .++.+.
T Consensus 23 Le~~l~C~IC~d~~--~~PvitpCgH~FCs~CI~~~l~~---------~~~CP--~Cr~~~~~~~Lr~N~~L--~~iVe~ 87 (397)
T TIGR00599 23 LDTSLRCHICKDFF--DVPVLTSCSHTFCSLCIRRCLSN---------QPKCP--LCRAEDQESKLRSNWLV--SEIVES 87 (397)
T ss_pred cccccCCCcCchhh--hCccCCCCCCchhHHHHHHHHhC---------CCCCC--CCCCccccccCccchHH--HHHHHH
Confidence 35678999999987 45567899999999999998752 12799 5998887654431 22 245566
Q ss_pred HHH
Q psy7604 108 YQH 110 (118)
Q Consensus 108 y~~ 110 (118)
|..
T Consensus 88 ~~~ 90 (397)
T TIGR00599 88 FKN 90 (397)
T ss_pred HHH
Confidence 643
No 21
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.24 E-value=9.3e-07 Score=45.54 Aligned_cols=30 Identities=33% Similarity=0.878 Sum_probs=26.1
Q ss_pred cccccccCCCCCcccCCCCccchHHHHHHHHH
Q psy7604 36 CEICFTNMPSTLMTGLECSHRFCTQCWCEYLT 67 (118)
Q Consensus 36 C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y~~ 67 (118)
|+||++.. .....++|||.||..|+..|+.
T Consensus 1 C~iC~~~~--~~~~~~~C~H~~c~~C~~~~~~ 30 (39)
T smart00184 1 CPICLEEL--KDPVVLPCGHTFCRSCIRKWLK 30 (39)
T ss_pred CCcCccCC--CCcEEecCCChHHHHHHHHHHH
Confidence 78999883 5667789999999999999987
No 22
>KOG0978|consensus
Probab=98.21 E-value=4.4e-07 Score=74.31 Aligned_cols=56 Identities=27% Similarity=0.536 Sum_probs=46.9
Q ss_pred CCccccccccccCCCCCcccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCccccccccHHHHhcc
Q psy7604 31 SSKSKCEICFTNMPSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGTVMRL 98 (118)
Q Consensus 31 ~~~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~~~~i~~l 98 (118)
.....|++|.+-. .+.+...|||.||..|++..+.++- -+|| +|+..++..+|..+
T Consensus 641 K~~LkCs~Cn~R~--Kd~vI~kC~H~FC~~Cvq~r~etRq--------RKCP--~Cn~aFganDv~~I 696 (698)
T KOG0978|consen 641 KELLKCSVCNTRW--KDAVITKCGHVFCEECVQTRYETRQ--------RKCP--KCNAAFGANDVHRI 696 (698)
T ss_pred HhceeCCCccCch--hhHHHHhcchHHHHHHHHHHHHHhc--------CCCC--CCCCCCCccccccc
Confidence 4577999999543 5778889999999999999998763 3799 69999999998765
No 23
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.10 E-value=4.9e-06 Score=62.59 Aligned_cols=53 Identities=21% Similarity=0.506 Sum_probs=38.4
Q ss_pred ccccccccccCCCC-C---cccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCccccccccHHHHh
Q psy7604 33 KSKCEICFTNMPST-L---MTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGTVM 96 (118)
Q Consensus 33 ~~~C~IC~~~~~~~-~---~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~~~~i~ 96 (118)
...||||..+...+ . +++ .|||.||.+|+...+. .| ...|| .|+..+....++
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~-~CGH~~C~sCv~~l~~-----~~---~~~CP--~C~~~lrk~~fr 59 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVN-VCGHTLCESCVDLLFV-----RG---SGSCP--ECDTPLRKNNFR 59 (309)
T ss_pred CCCCCcCCCCCccCcccccccC-CCCCcccHHHHHHHhc-----CC---CCCCC--CCCCccchhhcc
Confidence 45799999974332 2 233 7999999999999874 23 24899 699888776543
No 24
>KOG0287|consensus
Probab=98.09 E-value=1.6e-06 Score=65.78 Aligned_cols=65 Identities=23% Similarity=0.588 Sum_probs=49.5
Q ss_pred CCCccccccccccCCCCCcccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCccccccccHHHHhc--ccCChHHHHH
Q psy7604 30 TSSKSKCEICFTNMPSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGTVMR--LVRDPKVKLK 107 (118)
Q Consensus 30 ~~~~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~~~~i~~--ll~~~~~~~k 107 (118)
.+....|.||++-+. .+...+|+|.||.-|++.|+..+ ..|| .|...+.+..++. +|. |+.+-
T Consensus 20 lD~lLRC~IC~eyf~--ip~itpCsHtfCSlCIR~~L~~~---------p~CP--~C~~~~~Es~Lr~n~il~--Eiv~S 84 (442)
T KOG0287|consen 20 LDDLLRCGICFEYFN--IPMITPCSHTFCSLCIRKFLSYK---------PQCP--TCCVTVTESDLRNNRILD--EIVKS 84 (442)
T ss_pred hHHHHHHhHHHHHhc--CceeccccchHHHHHHHHHhccC---------CCCC--ceecccchhhhhhhhHHH--HHHHH
Confidence 456678999999983 34445799999999999999853 4699 5999999988864 453 56555
Q ss_pred HH
Q psy7604 108 YQ 109 (118)
Q Consensus 108 y~ 109 (118)
|.
T Consensus 85 ~~ 86 (442)
T KOG0287|consen 85 LN 86 (442)
T ss_pred HH
Confidence 53
No 25
>KOG2177|consensus
Probab=98.04 E-value=1.7e-06 Score=62.54 Aligned_cols=45 Identities=24% Similarity=0.664 Sum_probs=37.2
Q ss_pred CCccccccccccCCCCCcccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCccccc
Q psy7604 31 SSKSKCEICFTNMPSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNI 88 (118)
Q Consensus 31 ~~~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~ 88 (118)
....+|+||++.+. +...+.|||.||..|+...+. ..+.||. |+.
T Consensus 11 ~~~~~C~iC~~~~~--~p~~l~C~H~~c~~C~~~~~~---------~~~~Cp~--cr~ 55 (386)
T KOG2177|consen 11 QEELTCPICLEYFR--EPVLLPCGHNFCRACLTRSWE---------GPLSCPV--CRP 55 (386)
T ss_pred cccccChhhHHHhh--cCccccccchHhHHHHHHhcC---------CCcCCcc--cCC
Confidence 46789999999983 447789999999999999988 1378994 883
No 26
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.99 E-value=4.9e-06 Score=47.92 Aligned_cols=48 Identities=23% Similarity=0.553 Sum_probs=30.8
Q ss_pred CccccccccccCCCCCcccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCcccc
Q psy7604 32 SKSKCEICFTNMPSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCN 87 (118)
Q Consensus 32 ~~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~ 87 (118)
..+.|||-...+. +++.+..|||.|.++.+.+|+. .+ ..++||..||+
T Consensus 10 ~~~~CPiT~~~~~-~PV~s~~C~H~fek~aI~~~i~-----~~--~~~~CPv~GC~ 57 (57)
T PF11789_consen 10 ISLKCPITLQPFE-DPVKSKKCGHTFEKEAILQYIQ-----RN--GSKRCPVAGCN 57 (57)
T ss_dssp --SB-TTTSSB-S-SEEEESSS--EEEHHHHHHHCT-----TT--S-EE-SCCC-S
T ss_pred eccCCCCcCChhh-CCcCcCCCCCeecHHHHHHHHH-----hc--CCCCCCCCCCC
Confidence 4678999999872 3455679999999999999992 12 36899999995
No 27
>KOG1002|consensus
Probab=97.80 E-value=1.2e-05 Score=64.22 Aligned_cols=58 Identities=22% Similarity=0.567 Sum_probs=47.2
Q ss_pred CCCccccccccccCCCCCcccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCccccccccHHHH
Q psy7604 30 TSSKSKCEICFTNMPSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGTV 95 (118)
Q Consensus 30 ~~~~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~~~~i 95 (118)
+.....|.+|-+.- .+.+...|.|.||+-|++.|+..-. ++. .+.|| .|...++.+.-
T Consensus 533 nk~~~~C~lc~d~a--ed~i~s~ChH~FCrlCi~eyv~~f~--~~~--nvtCP--~C~i~LsiDls 590 (791)
T KOG1002|consen 533 NKGEVECGLCHDPA--EDYIESSCHHKFCRLCIKEYVESFM--ENN--NVTCP--VCHIGLSIDLS 590 (791)
T ss_pred ccCceeecccCChh--hhhHhhhhhHHHHHHHHHHHHHhhh--ccc--CCCCc--ccccccccccc
Confidence 45678999999874 6778889999999999999999876 343 59999 59988876633
No 28
>KOG0006|consensus
Probab=97.76 E-value=3.7e-05 Score=58.10 Aligned_cols=85 Identities=22% Similarity=0.475 Sum_probs=64.0
Q ss_pred CCCCccccccccccCCCCCcccCCCC--ccchHHHHHHHHHHHhhhcC------CceeeecCCccccccccHH-HHhccc
Q psy7604 29 STSSKSKCEICFTNMPSTLMTGLECS--HRFCTQCWCEYLTTKIIQEG------MGQTIACAAHGCNILVDDG-TVMRLV 99 (118)
Q Consensus 29 ~~~~~~~C~IC~~~~~~~~~~~l~Cg--H~fC~~C~~~y~~~~i~~~g------~~~~i~CP~~~C~~~i~~~-~i~~ll 99 (118)
.+.+..+|-.|-+.- +.+..++|. |..|.+|++-|..+++.+.. .+..+.||. +|...+-.+ .-.++|
T Consensus 217 ~N~~ni~C~~Ctdv~--~~vlvf~Cns~HvtC~dCFr~yc~~Rl~~rqf~~~p~~gyslpc~a-gc~~s~i~e~HHF~il 293 (446)
T KOG0006|consen 217 TNSRNITCITCTDVR--SPVLVFQCNSRHVTCLDCFRLYCVTRLNDRQFVHDPQLGYSLPCVA-GCPNSLIKELHHFRIL 293 (446)
T ss_pred cccccceeEEecCCc--cceEEEecCCceeehHHhhhhHhhhcccccccccCccccccccccC-CCchHHHHhhhhheec
Confidence 467788999998763 445667888 99999999999999985211 124678886 787655433 345788
Q ss_pred CChHHHHHHHHHHHhccc
Q psy7604 100 RDPKVKLKYQHLITNSFV 117 (118)
Q Consensus 100 ~~~~~~~ky~~~~~~~yv 117 (118)
. ++-|.+|+++..+.||
T Consensus 294 g-~e~Y~rYQr~atEe~v 310 (446)
T KOG0006|consen 294 G-EEQYNRYQRYATEECV 310 (446)
T ss_pred c-hhHHHHHHHhhhhhhe
Confidence 7 6889999999998886
No 29
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=4.8e-05 Score=55.91 Aligned_cols=53 Identities=26% Similarity=0.513 Sum_probs=41.3
Q ss_pred CccccccccccCCCCCcccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCccccccccHHHH
Q psy7604 32 SKSKCEICFTNMPSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGTV 95 (118)
Q Consensus 32 ~~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~~~~i 95 (118)
..+.|.||++.. ..+...+|||.||..|+-.-+..+ ..-.||. |+..+.+..|
T Consensus 214 ~d~kC~lC~e~~--~~ps~t~CgHlFC~~Cl~~~~t~~-------k~~~Cpl--CRak~~pk~v 266 (271)
T COG5574 214 ADYKCFLCLEEP--EVPSCTPCGHLFCLSCLLISWTKK-------KYEFCPL--CRAKVYPKKV 266 (271)
T ss_pred cccceeeeeccc--CCcccccccchhhHHHHHHHHHhh-------ccccCch--hhhhccchhh
Confidence 477899999985 566778999999999999864432 1235995 9998888777
No 30
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=97.61 E-value=8.3e-05 Score=44.68 Aligned_cols=67 Identities=10% Similarity=0.054 Sum_probs=45.4
Q ss_pred CccccccccccCCCCCcccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCccccccccHHHHhcccCChHHHHHHHHH
Q psy7604 32 SKSKCEICFTNMPSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGTVMRLVRDPKVKLKYQHL 111 (118)
Q Consensus 32 ~~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~~~~i~~ll~~~~~~~ky~~~ 111 (118)
+.+.|+|+.+-+ .+++.+++||.|++.++.+|+.. + ...||. ++..++.+++. .+..+++.-++|
T Consensus 3 ~~f~CpIt~~lM--~dPVi~~~G~tyer~~I~~~l~~-----~---~~~~P~--t~~~l~~~~l~---pn~~Lk~~I~~~ 67 (73)
T PF04564_consen 3 DEFLCPITGELM--RDPVILPSGHTYERSAIERWLEQ-----N---GGTDPF--TRQPLSESDLI---PNRALKSAIEEW 67 (73)
T ss_dssp GGGB-TTTSSB---SSEEEETTSEEEEHHHHHHHHCT-----T---SSB-TT--T-SB-SGGGSE---E-HHHHHHHHHH
T ss_pred cccCCcCcCcHh--hCceeCCcCCEEcHHHHHHHHHc-----C---CCCCCC--CCCcCCcccce---ECHHHHHHHHHH
Confidence 578999999987 67888899999999999999984 1 347995 77778776543 344566655555
Q ss_pred HH
Q psy7604 112 IT 113 (118)
Q Consensus 112 ~~ 113 (118)
+.
T Consensus 68 ~~ 69 (73)
T PF04564_consen 68 CA 69 (73)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 31
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=6.6e-05 Score=56.36 Aligned_cols=53 Identities=25% Similarity=0.563 Sum_probs=43.0
Q ss_pred CCCccccccccccCCCCC-cccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCccccccccH
Q psy7604 30 TSSKSKCEICFTNMPSTL-MTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDD 92 (118)
Q Consensus 30 ~~~~~~C~IC~~~~~~~~-~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~~ 92 (118)
.+...+|-||++++...+ ...++|.|.|...|+..|+.. ...+|| .|+..+++
T Consensus 320 a~~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~--------y~~~CP--vCrt~iPP 373 (374)
T COG5540 320 ADKGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLG--------YSNKCP--VCRTAIPP 373 (374)
T ss_pred cCCCceEEEEhhhhcccceEEEeccCceechhHHHHHHhh--------hcccCC--ccCCCCCC
Confidence 456789999999985443 567899999999999999872 246899 59988875
No 32
>KOG0824|consensus
Probab=97.31 E-value=0.00011 Score=54.95 Aligned_cols=55 Identities=25% Similarity=0.568 Sum_probs=42.4
Q ss_pred CCccccccccccCCCCCcccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCccccccccHHHHhc
Q psy7604 31 SSKSKCEICFTNMPSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGTVMR 97 (118)
Q Consensus 31 ~~~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~~~~i~~ 97 (118)
....+|.||+.+. ..++.|.|+|.||..|++.-... + ...|+ -|+..|+.+.+.+
T Consensus 5 ~~~~eC~IC~nt~--n~Pv~l~C~HkFCyiCiKGsy~n-----d---k~~Ca--vCR~pids~i~~~ 59 (324)
T KOG0824|consen 5 TKKKECLICYNTG--NCPVNLYCFHKFCYICIKGSYKN-----D---KKTCA--VCRFPIDSTIDFE 59 (324)
T ss_pred ccCCcceeeeccC--CcCccccccchhhhhhhcchhhc-----C---CCCCc--eecCCCCcchhcc
Confidence 4567899999985 45688999999999998875542 2 24699 5999998877643
No 33
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=97.26 E-value=0.00025 Score=39.31 Aligned_cols=44 Identities=25% Similarity=0.643 Sum_probs=21.0
Q ss_pred cccccccCCCCC--cccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCcccccc
Q psy7604 36 CEICFTNMPSTL--MTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNIL 89 (118)
Q Consensus 36 C~IC~~~~~~~~--~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~ 89 (118)
|++|.+++...+ +.--.||+++|+.||..-++ ++ .=+|| +|+..
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~-----~~---~g~CP--gCr~~ 46 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILE-----NE---GGRCP--GCREP 46 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTT-----SS----SB-T--TT--B
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHh-----cc---CCCCC--CCCCC
Confidence 789999985443 33348999999999986655 11 23699 69865
No 34
>KOG4628|consensus
Probab=97.20 E-value=0.00017 Score=55.25 Aligned_cols=48 Identities=27% Similarity=0.629 Sum_probs=38.4
Q ss_pred cccccccccCCCCC-cccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCcccccccc
Q psy7604 34 SKCEICFTNMPSTL-MTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVD 91 (118)
Q Consensus 34 ~~C~IC~~~~~~~~-~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~ 91 (118)
.+|-||+|++..++ ...|+|+|.|...|+..||... .-.||. |+..+.
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~--------r~~CPv--CK~di~ 278 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQT--------RTFCPV--CKRDIR 278 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhc--------CccCCC--CCCcCC
Confidence 69999999997655 5669999999999999999853 135995 776543
No 35
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.16 E-value=0.00027 Score=52.91 Aligned_cols=53 Identities=25% Similarity=0.536 Sum_probs=39.5
Q ss_pred CCccccccccccCCCCCcccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCccccccccHHHHh
Q psy7604 31 SSKSKCEICFTNMPSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGTVM 96 (118)
Q Consensus 31 ~~~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~~~~i~ 96 (118)
+....|-||-+-+ .......|||.||.-|++.|+.++ ..||. |.....+.-++
T Consensus 23 Ds~lrC~IC~~~i--~ip~~TtCgHtFCslCIR~hL~~q---------p~CP~--Cr~~~~esrlr 75 (391)
T COG5432 23 DSMLRCRICDCRI--SIPCETTCGHTFCSLCIRRHLGTQ---------PFCPV--CREDPCESRLR 75 (391)
T ss_pred hhHHHhhhhhhee--ecceecccccchhHHHHHHHhcCC---------CCCcc--ccccHHhhhcc
Confidence 4567899998886 345667999999999999999743 35884 87665554443
No 36
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.10 E-value=0.00021 Score=50.77 Aligned_cols=32 Identities=28% Similarity=0.579 Sum_probs=26.8
Q ss_pred CCccccccccccCCCCCcccCCCCccchHHHHHH
Q psy7604 31 SSKSKCEICFTNMPSTLMTGLECSHRFCTQCWCE 64 (118)
Q Consensus 31 ~~~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~ 64 (118)
.-.|.|.||-.++ ..++...|||.||..|.-.
T Consensus 194 ~IPF~C~iCKkdy--~spvvt~CGH~FC~~Cai~ 225 (259)
T COG5152 194 KIPFLCGICKKDY--ESPVVTECGHSFCSLCAIR 225 (259)
T ss_pred CCceeehhchhhc--cchhhhhcchhHHHHHHHH
Confidence 4578999999998 5577889999999999754
No 37
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.03 E-value=0.00034 Score=41.77 Aligned_cols=57 Identities=16% Similarity=0.371 Sum_probs=26.4
Q ss_pred ccccccccccCC-CCCc---c--cCCCCccchHHHHHHHHHHHhhhcCCc---eeeecCCccccccccH
Q psy7604 33 KSKCEICFTNMP-STLM---T--GLECSHRFCTQCWCEYLTTKIIQEGMG---QTIACAAHGCNILVDD 92 (118)
Q Consensus 33 ~~~C~IC~~~~~-~~~~---~--~l~CgH~fC~~C~~~y~~~~i~~~g~~---~~i~CP~~~C~~~i~~ 92 (118)
+..|+||+.... .+.. + ...|++.|-..|+.+|+...-+ .... ..=+||. |+..|+-
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~-~~~~~~~~~G~CP~--C~~~i~~ 67 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEK-SRQSFIPIFGECPY--CSSPISW 67 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHS-SS-TTT--EEE-TT--T-SEEEG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHccc-CCeeecccccCCcC--CCCeeeE
Confidence 468999998764 2222 1 2378999999999999987642 2111 2347995 9988764
No 38
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=97.01 E-value=0.00055 Score=41.14 Aligned_cols=35 Identities=23% Similarity=0.559 Sum_probs=26.2
Q ss_pred ccccccccccCCC---------C--CcccCCCCccchHHHHHHHHH
Q psy7604 33 KSKCEICFTNMPS---------T--LMTGLECSHRFCTQCWCEYLT 67 (118)
Q Consensus 33 ~~~C~IC~~~~~~---------~--~~~~l~CgH~fC~~C~~~y~~ 67 (118)
...|.||++.+.. + .+....|||.|...|+.+|+.
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~ 64 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLK 64 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHT
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHh
Confidence 3459999999821 1 123348999999999999996
No 39
>KOG1645|consensus
Probab=96.89 E-value=0.00075 Score=52.52 Aligned_cols=56 Identities=23% Similarity=0.585 Sum_probs=43.0
Q ss_pred CccccccccccCCC---CCcccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCccccccccHHHHh
Q psy7604 32 SKSKCEICFTNMPS---TLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGTVM 96 (118)
Q Consensus 32 ~~~~C~IC~~~~~~---~~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~~~~i~ 96 (118)
...+||||++++.. ..++++.|||-|=.+|+..|+. ++ ....||. |...-...+|+
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~-k~------~~~~cp~--c~~katkr~i~ 61 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLG-KK------TKMQCPL--CSGKATKRQIR 61 (463)
T ss_pred ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHh-hh------hhhhCcc--cCChhHHHHHH
Confidence 35789999999742 2478899999999999999995 44 2468996 87766555554
No 40
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=96.88 E-value=0.00013 Score=42.76 Aligned_cols=49 Identities=27% Similarity=0.569 Sum_probs=22.1
Q ss_pred ccccccccccCCCCCcc-cCCCCccchHHHHHHHHHHHhhhcCCceeeecCCccccccccHHHHh
Q psy7604 33 KSKCEICFTNMPSTLMT-GLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGTVM 96 (118)
Q Consensus 33 ~~~C~IC~~~~~~~~~~-~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~~~~i~ 96 (118)
...|++|.+-+ ..++ ...|.|.||..|++. .+ | ..||. |..+.-..+++
T Consensus 7 lLrCs~C~~~l--~~pv~l~~CeH~fCs~Ci~~----~~---~----~~CPv--C~~Paw~qD~~ 56 (65)
T PF14835_consen 7 LLRCSICFDIL--KEPVCLGGCEHIFCSSCIRD----CI---G----SECPV--CHTPAWIQDIQ 56 (65)
T ss_dssp TTS-SSS-S----SS-B---SSS--B-TTTGGG----GT---T----TB-SS--S--B-S-SS--
T ss_pred hcCCcHHHHHh--cCCceeccCccHHHHHHhHH----hc---C----CCCCC--cCChHHHHHHH
Confidence 45799999987 4455 459999999999855 22 2 24994 98877655554
No 41
>KOG1039|consensus
Probab=96.86 E-value=0.0009 Score=51.35 Aligned_cols=57 Identities=21% Similarity=0.540 Sum_probs=39.6
Q ss_pred CCCCccccccccccCCCCC-----c-ccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCcccccc
Q psy7604 29 STSSKSKCEICFTNMPSTL-----M-TGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNIL 89 (118)
Q Consensus 29 ~~~~~~~C~IC~~~~~~~~-----~-~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~ 89 (118)
..+...+|+||++...... . +.++|.|.||..|++.|-...= .+....-.||. |+..
T Consensus 157 ~~s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q--~~~~~sksCP~--CRv~ 219 (344)
T KOG1039|consen 157 QKSSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQ--FESKTSKSCPF--CRVP 219 (344)
T ss_pred CccccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhc--cccccccCCCc--ccCc
Confidence 3467889999999974322 1 3368999999999999875542 12224568995 7743
No 42
>KOG2879|consensus
Probab=96.84 E-value=0.0016 Score=48.36 Aligned_cols=54 Identities=20% Similarity=0.470 Sum_probs=39.3
Q ss_pred CCCCccccccccccCCCCCcccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCccccccccH
Q psy7604 29 STSSKSKCEICFTNMPSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDD 92 (118)
Q Consensus 29 ~~~~~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~~ 92 (118)
..+...+|++|-+. +..+.+...|||.||--|+..-.... ..+.|| .|+..+.+
T Consensus 235 ~~t~~~~C~~Cg~~-PtiP~~~~~C~HiyCY~Ci~ts~~~~-------asf~Cp--~Cg~~~~~ 288 (298)
T KOG2879|consen 235 TGTSDTECPVCGEP-PTIPHVIGKCGHIYCYYCIATSRLWD-------ASFTCP--LCGENVEP 288 (298)
T ss_pred cccCCceeeccCCC-CCCCeeeccccceeehhhhhhhhcch-------hhcccC--ccCCCCcc
Confidence 34567899999877 33455556799999999987665543 247999 59887763
No 43
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.0013 Score=50.76 Aligned_cols=51 Identities=27% Similarity=0.580 Sum_probs=38.4
Q ss_pred CCCccccccccccC-CCC----------CcccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCcccccccc
Q psy7604 30 TSSKSKCEICFTNM-PST----------LMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVD 91 (118)
Q Consensus 30 ~~~~~~C~IC~~~~-~~~----------~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~ 91 (118)
..+...|-||+|++ ... .+..++|||.+-..|++.|++.+ =.||. |+.++-
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERq---------QTCPI--Cr~p~i 345 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQ---------QTCPI--CRRPVI 345 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhc---------cCCCc--ccCccc
Confidence 34677899999994 211 13568999999999999999843 26995 988753
No 44
>KOG1428|consensus
Probab=96.77 E-value=0.0026 Score=56.60 Aligned_cols=76 Identities=28% Similarity=0.565 Sum_probs=59.8
Q ss_pred CCccccccccccC-CCCCcccCCCCccchHHHHHHHHHHHhhhcCCc---eeeecCCccccccccHHHHhcccCChHHHH
Q psy7604 31 SSKSKCEICFTNM-PSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMG---QTIACAAHGCNILVDDGTVMRLVRDPKVKL 106 (118)
Q Consensus 31 ~~~~~C~IC~~~~-~~~~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~---~~i~CP~~~C~~~i~~~~i~~ll~~~~~~~ 106 (118)
+..-.|.|||.+- ...+.+.|.|+|.|-..|.+.-++.+-. |.. ..|.||. |+..|....++.||. | +.+
T Consensus 3484 D~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~--GPRItF~FisCPi--C~n~InH~~LkDLld-P-iKe 3557 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWL--GPRITFGFISCPI--CKNKINHIVLKDLLD-P-IKE 3557 (3738)
T ss_pred ccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhccc--CCeeEEeeeeccc--ccchhhhHHHHHHHH-H-HHH
Confidence 4456799999885 3345688999999999999999998863 322 4789995 999999999999984 4 666
Q ss_pred HHHHHH
Q psy7604 107 KYQHLI 112 (118)
Q Consensus 107 ky~~~~ 112 (118)
-|+...
T Consensus 3558 l~edV~ 3563 (3738)
T KOG1428|consen 3558 LYEDVR 3563 (3738)
T ss_pred HHHHHH
Confidence 666543
No 45
>KOG4159|consensus
Probab=96.70 E-value=0.0016 Score=50.90 Aligned_cols=70 Identities=17% Similarity=0.407 Sum_probs=46.2
Q ss_pred CCccccccccccCCCCCcccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCccccccccH-HHHhcccCChHHHHHHH
Q psy7604 31 SSKSKCEICFTNMPSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDD-GTVMRLVRDPKVKLKYQ 109 (118)
Q Consensus 31 ~~~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~~-~~i~~ll~~~~~~~ky~ 109 (118)
.+++.|.||+..+ -++++++|||.||..|+.+ .. + ....||. |+..+.. ......++ ..++.
T Consensus 82 ~sef~c~vc~~~l--~~pv~tpcghs~c~~Cl~r----~l-d----~~~~cp~--Cr~~l~e~~~~~~~~~----~~r~~ 144 (398)
T KOG4159|consen 82 RSEFECCVCSRAL--YPPVVTPCGHSFCLECLDR----SL-D----QETECPL--CRDELVELPALEQALS----LNRLL 144 (398)
T ss_pred cchhhhhhhHhhc--CCCccccccccccHHHHHH----Hh-c----cCCCCcc--cccccccchHHHHHHH----HHHHH
Confidence 6789999999887 4567779999999999655 22 1 2467995 9887774 22222211 25555
Q ss_pred HHHHhccc
Q psy7604 110 HLITNSFV 117 (118)
Q Consensus 110 ~~~~~~yv 117 (118)
+.++..|.
T Consensus 145 ~~li~~F~ 152 (398)
T KOG4159|consen 145 CKLITKFL 152 (398)
T ss_pred HHHHHHhh
Confidence 55555554
No 46
>KOG0311|consensus
Probab=96.54 E-value=0.00035 Score=53.35 Aligned_cols=50 Identities=32% Similarity=0.699 Sum_probs=36.4
Q ss_pred CCCccccccccccCCCCCcccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCccccccc
Q psy7604 30 TSSKSKCEICFTNMPSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILV 90 (118)
Q Consensus 30 ~~~~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i 90 (118)
....+.|+||++-+. .-+....|+|+||.+|+-.-+.. | .-.|| .|+..+
T Consensus 40 ~~~~v~c~icl~llk-~tmttkeClhrfc~~ci~~a~r~-----g---n~ecp--tcRk~l 89 (381)
T KOG0311|consen 40 FDIQVICPICLSLLK-KTMTTKECLHRFCFDCIWKALRS-----G---NNECP--TCRKKL 89 (381)
T ss_pred hhhhhccHHHHHHHH-hhcccHHHHHHHHHHHHHHHHHh-----c---CCCCc--hHHhhc
Confidence 356789999999874 34566899999999998665542 2 23699 587644
No 47
>KOG0826|consensus
Probab=96.22 E-value=0.0066 Score=46.16 Aligned_cols=76 Identities=17% Similarity=0.402 Sum_probs=48.8
Q ss_pred ccCCChhHHHHHcCcCCCCCCCC--------CCCCCCccccccccccCCCCCcccCCCCccchHHHHHHHHHHHhhhcCC
Q psy7604 4 YYDGDQEQLFAEARVINPLVKNS--------QPSTSSKSKCEICFTNMPSTLMTGLECSHRFCTQCWCEYLTTKIIQEGM 75 (118)
Q Consensus 4 y~~~~~~~~~~~~gl~~~~~~~~--------~~~~~~~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y~~~~i~~~g~ 75 (118)
||..|.++..+. ++.+|.++++ ++.......|+||..... ++.+..--|-.||-.|.-+|+.+ .|
T Consensus 264 Wyssd~~~~~k~-~l~~p~PpPPh~~~~se~e~l~~~~~~CpvClk~r~-Nptvl~vSGyVfCY~Ci~~Yv~~----~~- 336 (357)
T KOG0826|consen 264 WYSSDNQRKIKS-TLDPPIPPPPHKQYNSESELLPPDREVCPVCLKKRQ-NPTVLEVSGYVFCYPCIFSYVVN----YG- 336 (357)
T ss_pred HhcchHHHhhcc-CCCCCCCcCChhhcccccccCCCccccChhHHhccC-CCceEEecceEEeHHHHHHHHHh----cC-
Confidence 455444554444 5554443332 233456678999998862 34444456999999999999982 34
Q ss_pred ceeeecCCccccccc
Q psy7604 76 GQTIACAAHGCNILV 90 (118)
Q Consensus 76 ~~~i~CP~~~C~~~i 90 (118)
+||..+|...+
T Consensus 337 ----~CPVT~~p~~v 347 (357)
T KOG0826|consen 337 ----HCPVTGYPASV 347 (357)
T ss_pred ----CCCccCCcchH
Confidence 59987777544
No 48
>KOG2660|consensus
Probab=96.09 E-value=0.0034 Score=47.61 Aligned_cols=50 Identities=28% Similarity=0.698 Sum_probs=38.1
Q ss_pred CCccccccccccCCCCCcccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCccccccccH
Q psy7604 31 SSKSKCEICFTNMPSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDD 92 (118)
Q Consensus 31 ~~~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~~ 92 (118)
..-.+|.+|-.-+ ....+...|-|.||++|+-.|+... ..|| .|...|..
T Consensus 13 n~~itC~LC~GYl-iDATTI~eCLHTFCkSCivk~l~~~---------~~CP--~C~i~ih~ 62 (331)
T KOG2660|consen 13 NPHITCRLCGGYL-IDATTITECLHTFCKSCIVKYLEES---------KYCP--TCDIVIHK 62 (331)
T ss_pred ccceehhhcccee-ecchhHHHHHHHHHHHHHHHHHHHh---------ccCC--ccceeccC
Confidence 4567899998765 2334556999999999999999961 3699 58877654
No 49
>KOG0802|consensus
Probab=96.04 E-value=0.0039 Score=50.51 Aligned_cols=49 Identities=24% Similarity=0.619 Sum_probs=37.5
Q ss_pred CCccccccccccCCCC---CcccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCccccccc
Q psy7604 31 SSKSKCEICFTNMPST---LMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILV 90 (118)
Q Consensus 31 ~~~~~C~IC~~~~~~~---~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i 90 (118)
.....|.||.+.+... ....+.|||.|+..|+++|++.+ -.||. |+..+
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~---------qtCP~--CR~~~ 340 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQ---------QTCPT--CRTVL 340 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHh---------CcCCc--chhhh
Confidence 3467899999998432 14668999999999999999963 25994 77633
No 50
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.02 E-value=0.0075 Score=46.28 Aligned_cols=58 Identities=22% Similarity=0.575 Sum_probs=42.2
Q ss_pred CCccccccccccCCCCC--cccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCccccccccHHHHhcc
Q psy7604 31 SSKSKCEICFTNMPSTL--MTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGTVMRL 98 (118)
Q Consensus 31 ~~~~~C~IC~~~~~~~~--~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~~~~i~~l 98 (118)
+++-.||.|++++.+.+ ++--.||-+.|+-||.. |+..+ +| +|| .|+...+++.|+..
T Consensus 12 deed~cplcie~mditdknf~pc~cgy~ic~fc~~~-irq~l--ng-----rcp--acrr~y~denv~~~ 71 (480)
T COG5175 12 DEEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNN-IRQNL--NG-----RCP--ACRRKYDDENVRYV 71 (480)
T ss_pred cccccCcccccccccccCCcccCCcccHHHHHHHHH-HHhhc--cC-----CCh--HhhhhccccceeEE
Confidence 34455999999987654 45568999999999964 33333 23 799 49998888877653
No 51
>KOG4265|consensus
Probab=96.01 E-value=0.0073 Score=46.27 Aligned_cols=50 Identities=24% Similarity=0.573 Sum_probs=38.2
Q ss_pred CCCccccccccccCCCCCcccCCCCc-cchHHHHHHHHHHHhhhcCCceeeecCCccccccccH
Q psy7604 30 TSSKSKCEICFTNMPSTLMTGLECSH-RFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDD 92 (118)
Q Consensus 30 ~~~~~~C~IC~~~~~~~~~~~l~CgH-~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~~ 92 (118)
+.+..+|.||+.+- .+.+.|+|.| -.|.+|.+..- .+ .=+||. |+..+..
T Consensus 287 ~~~gkeCVIClse~--rdt~vLPCRHLCLCs~Ca~~Lr-~q--------~n~CPI--CRqpi~~ 337 (349)
T KOG4265|consen 287 SESGKECVICLSES--RDTVVLPCRHLCLCSGCAKSLR-YQ--------TNNCPI--CRQPIEE 337 (349)
T ss_pred ccCCCeeEEEecCC--cceEEecchhhehhHhHHHHHH-Hh--------hcCCCc--cccchHh
Confidence 35578999999984 5788899999 59999988765 22 126995 9987754
No 52
>KOG4692|consensus
Probab=95.92 E-value=0.008 Score=46.33 Aligned_cols=38 Identities=32% Similarity=0.648 Sum_probs=29.5
Q ss_pred CCCCccccccccccCCCCCcccCCCCccchHHHHHHHHHH
Q psy7604 29 STSSKSKCEICFTNMPSTLMTGLECSHRFCTQCWCEYLTT 68 (118)
Q Consensus 29 ~~~~~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y~~~ 68 (118)
+.++...|+||+-. + ...+..+|+|+-|.+|+.+|+-+
T Consensus 418 p~sEd~lCpICyA~-p-i~Avf~PC~H~SC~~CI~qHlmN 455 (489)
T KOG4692|consen 418 PDSEDNLCPICYAG-P-INAVFAPCSHRSCYGCITQHLMN 455 (489)
T ss_pred CCcccccCcceecc-c-chhhccCCCCchHHHHHHHHHhc
Confidence 44577889999965 2 23345699999999999999874
No 53
>KOG2817|consensus
Probab=95.57 E-value=0.017 Score=44.92 Aligned_cols=60 Identities=17% Similarity=0.241 Sum_probs=42.3
Q ss_pred CCccccccccccCCC-CCcccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCccccccccHHHHhcc
Q psy7604 31 SSKSKCEICFTNMPS-TLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGTVMRL 98 (118)
Q Consensus 31 ~~~~~C~IC~~~~~~-~~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~~~~i~~l 98 (118)
-+.|.|||=-+.-.. +++..|.|||..+++=+..... +|. ..++||- |...-..+..+++
T Consensus 332 HSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~-----ng~-~sfKCPY--CP~e~~~~~~kql 392 (394)
T KOG2817|consen 332 HSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSK-----NGS-QSFKCPY--CPVEQLASDTKQL 392 (394)
T ss_pred cceeecccchhhccCCCCCeeeeccceecHHHHHHHhh-----CCC-eeeeCCC--CCcccCHHhcccc
Confidence 467899997666543 4567899999999975544333 454 4799996 9887776665543
No 54
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=95.56 E-value=0.015 Score=35.95 Aligned_cols=51 Identities=24% Similarity=0.475 Sum_probs=34.7
Q ss_pred ccccccccccCCC---------C--CcccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCcccccccc
Q psy7604 33 KSKCEICFTNMPS---------T--LMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVD 91 (118)
Q Consensus 33 ~~~C~IC~~~~~~---------~--~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~ 91 (118)
...|+||...+.. . .++.-.|+|.|...|+.+++.++- + .-.|| .|+....
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~---~---~~~CP--mCR~~w~ 82 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQS---S---KGQCP--MCRQPWK 82 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHcccc---C---CCCCC--CcCCeee
Confidence 5567777666542 1 223348999999999999999752 2 23799 5887643
No 55
>KOG4185|consensus
Probab=95.20 E-value=0.041 Score=41.01 Aligned_cols=59 Identities=31% Similarity=0.656 Sum_probs=43.1
Q ss_pred ccccccccccCCCC----CcccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCcccccc--ccHHHHhcccCC
Q psy7604 33 KSKCEICFTNMPST----LMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNIL--VDDGTVMRLVRD 101 (118)
Q Consensus 33 ~~~C~IC~~~~~~~----~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~--i~~~~i~~ll~~ 101 (118)
...|.||-+++... -+..|.|||.+|..|....+.. + .+.|| -|+.. ++...++.+-.+
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~-----~---~i~cp--fcR~~~~~~~~~~~~l~kN 67 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGN-----S---RILCP--FCRETTEIPDGDVKSLQKN 67 (296)
T ss_pred CCceeecCccccccCcccCCcccccCceehHhHHHHHhcC-----c---eeecc--CCCCcccCCchhHhhhhhh
Confidence 35799999998643 2456799999999999887762 2 46787 48888 666677666543
No 56
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=95.16 E-value=0.0094 Score=39.88 Aligned_cols=80 Identities=11% Similarity=0.270 Sum_probs=46.4
Q ss_pred CCccccccccccCCC-CCcccCCCC------ccchHHHHHHHHHHHhhhcC---C-ceeeecCC---ccccccccHHHHh
Q psy7604 31 SSKSKCEICFTNMPS-TLMTGLECS------HRFCTQCWCEYLTTKIIQEG---M-GQTIACAA---HGCNILVDDGTVM 96 (118)
Q Consensus 31 ~~~~~C~IC~~~~~~-~~~~~l~Cg------H~fC~~C~~~y~~~~i~~~g---~-~~~i~CP~---~~C~~~i~~~~i~ 96 (118)
....+|.||++.+.. ..++.+.|| |.||.+|++.|-..+-+ +. . .....=|- ..|+..|.. .+
T Consensus 24 ~~~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~~~r-DPfnR~I~y~F~fPf~~~~ec~~~L~~--~~ 100 (134)
T PF05883_consen 24 RCTVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRERNR-DPFNRNIKYWFNFPFKNLEECKSFLEK--SK 100 (134)
T ss_pred ccCeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhhccC-CCcccceEEEEeCCCCCHHHHHHHHHh--cc
Confidence 347899999999865 335556665 78999999999433211 11 0 02233342 246555443 23
Q ss_pred cccCChHHHHHHHHHHH
Q psy7604 97 RLVRDPKVKLKYQHLIT 113 (118)
Q Consensus 97 ~ll~~~~~~~ky~~~~~ 113 (118)
.+++|++.-+.|..-.-
T Consensus 101 ~FIGde~~d~~f~~~~~ 117 (134)
T PF05883_consen 101 GFIGDEEKDEVFKDEYK 117 (134)
T ss_pred CcCCChHHHHHHHHHHH
Confidence 55666655555555443
No 57
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=95.05 E-value=0.0062 Score=44.65 Aligned_cols=51 Identities=24% Similarity=0.664 Sum_probs=37.6
Q ss_pred ccccccccccCCCC-Cc---ccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCcccccccc
Q psy7604 33 KSKCEICFTNMPST-LM---TGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVD 91 (118)
Q Consensus 33 ~~~C~IC~~~~~~~-~~---~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~ 91 (118)
...||||-.+.-.+ ++ +...|-|+.|-+|.-..++ .| +..||..+|..++-
T Consensus 10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs-----~G---pAqCP~~gC~kILR 64 (314)
T COG5220 10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFS-----RG---PAQCPYKGCGKILR 64 (314)
T ss_pred cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhc-----CC---CCCCCCccHHHHHH
Confidence 45799999885433 22 3446999999999876665 34 56899999998764
No 58
>PF04641 Rtf2: Rtf2 RING-finger
Probab=95.02 E-value=0.029 Score=41.45 Aligned_cols=69 Identities=14% Similarity=0.250 Sum_probs=48.7
Q ss_pred CCCccccccccccCCCC-CcccC-CCCccchHHHHHHHHHHHhhhcCCceeeecCCccccccccHHHHhcccCChHHHHH
Q psy7604 30 TSSKSKCEICFTNMPST-LMTGL-ECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGTVMRLVRDPKVKLK 107 (118)
Q Consensus 30 ~~~~~~C~IC~~~~~~~-~~~~l-~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~~~~i~~ll~~~~~~~k 107 (118)
....+.|||....+... .++.+ +|||.|+..++++. + . + -.||. |...+...+|..|-+..+..+.
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~---k-~-~-----~~Cp~--c~~~f~~~DiI~Lnp~~ee~~~ 177 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL---K-K-S-----KKCPV--CGKPFTEEDIIPLNPPEEELEK 177 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh---c-c-c-----ccccc--cCCccccCCEEEecCCccHHHH
Confidence 35678999999998543 34444 99999999988776 1 1 1 24995 9999999998887653333444
Q ss_pred HHH
Q psy7604 108 YQH 110 (118)
Q Consensus 108 y~~ 110 (118)
...
T Consensus 178 l~~ 180 (260)
T PF04641_consen 178 LRE 180 (260)
T ss_pred HHH
Confidence 443
No 59
>KOG1785|consensus
Probab=94.90 E-value=0.012 Score=46.06 Aligned_cols=44 Identities=30% Similarity=0.692 Sum_probs=33.2
Q ss_pred cccccccccCCCCCcccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCccc
Q psy7604 34 SKCEICFTNMPSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGC 86 (118)
Q Consensus 34 ~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C 86 (118)
..|-||-+.- .++..-+|||..|..|+..|-.+ ++|+ .||-..|
T Consensus 370 eLCKICaend--KdvkIEPCGHLlCt~CLa~WQ~s---d~gq----~CPFCRc 413 (563)
T KOG1785|consen 370 ELCKICAEND--KDVKIEPCGHLLCTSCLAAWQDS---DEGQ----TCPFCRC 413 (563)
T ss_pred HHHHHhhccC--CCcccccccchHHHHHHHhhccc---CCCC----CCCceee
Confidence 4699999884 55666799999999999998653 2454 5886334
No 60
>KOG1001|consensus
Probab=94.78 E-value=0.011 Score=49.18 Aligned_cols=52 Identities=19% Similarity=0.543 Sum_probs=41.3
Q ss_pred cccccccccCCCCCcccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCccccccccHHHHhc
Q psy7604 34 SKCEICFTNMPSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGTVMR 97 (118)
Q Consensus 34 ~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~~~~i~~ 97 (118)
..|.||.+ ....+...|||.||.+||..++...- ...|| .|+..+....+..
T Consensus 455 ~~c~ic~~---~~~~~it~c~h~~c~~c~~~~i~~~~-------~~~~~--~cr~~l~~~~l~s 506 (674)
T KOG1001|consen 455 HWCHICCD---LDSFFITRCGHDFCVECLKKSIQQSE-------NAPCP--LCRNVLKEKKLLS 506 (674)
T ss_pred cccccccc---cccceeecccchHHHHHHHhcccccc-------CCCCc--HHHHHHHHHHHhh
Confidence 89999999 25677789999999999999998542 12788 5998888776654
No 61
>KOG1813|consensus
Probab=94.25 E-value=0.015 Score=43.73 Aligned_cols=34 Identities=26% Similarity=0.447 Sum_probs=28.1
Q ss_pred CccccccccccCCCCCcccCCCCccchHHHHHHHHH
Q psy7604 32 SKSKCEICFTNMPSTLMTGLECSHRFCTQCWCEYLT 67 (118)
Q Consensus 32 ~~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y~~ 67 (118)
-.+-|.||-..+ ...+...|+|.||..|....+.
T Consensus 240 ~Pf~c~icr~~f--~~pVvt~c~h~fc~~ca~~~~q 273 (313)
T KOG1813|consen 240 LPFKCFICRKYF--YRPVVTKCGHYFCEVCALKPYQ 273 (313)
T ss_pred CCcccccccccc--ccchhhcCCceeehhhhccccc
Confidence 356799999997 5678889999999999876655
No 62
>KOG0828|consensus
Probab=94.19 E-value=0.032 Score=44.75 Aligned_cols=53 Identities=23% Similarity=0.506 Sum_probs=38.1
Q ss_pred CCCccccccccccCCC----CC-----------cccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCccccccccH
Q psy7604 30 TSSKSKCEICFTNMPS----TL-----------MTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDD 92 (118)
Q Consensus 30 ~~~~~~C~IC~~~~~~----~~-----------~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~~ 92 (118)
..+...|.||+.+++. .+ ....+|.|.|-+.|+.+|..+. .+.|| .|+..+++
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~y--------kl~CP--vCR~pLPp 635 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTY--------KLICP--VCRCPLPP 635 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhh--------cccCC--ccCCCCCC
Confidence 3467789999988652 11 1123899999999999998732 35799 48877764
No 63
>KOG4739|consensus
Probab=94.14 E-value=0.019 Score=41.82 Aligned_cols=45 Identities=22% Similarity=0.537 Sum_probs=32.4
Q ss_pred cccccccccCCCCCcccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCcccccccc
Q psy7604 34 SKCEICFTNMPSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVD 91 (118)
Q Consensus 34 ~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~ 91 (118)
+.|..|+-.-+...++.++|+|.||..|.+.- ..-.||. |+..+-
T Consensus 4 VhCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~-----------~~~~C~l--Ckk~ir 48 (233)
T KOG4739|consen 4 VHCNKCFRFPSQDPFFLTACRHVFCEPCLKAS-----------SPDVCPL--CKKSIR 48 (233)
T ss_pred EEeccccccCCCCceeeeechhhhhhhhcccC-----------Ccccccc--ccceee
Confidence 56999987765455677899999999886421 1227995 988764
No 64
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=94.13 E-value=0.058 Score=29.85 Aligned_cols=42 Identities=14% Similarity=0.309 Sum_probs=29.6
Q ss_pred ccccccccCCCCCcccCCCC-----ccchHHHHHHHHHHHhhhcCCceeeecCC
Q psy7604 35 KCEICFTNMPSTLMTGLECS-----HRFCTQCWCEYLTTKIIQEGMGQTIACAA 83 (118)
Q Consensus 35 ~C~IC~~~~~~~~~~~l~Cg-----H~fC~~C~~~y~~~~i~~~g~~~~i~CP~ 83 (118)
.|-||++....++....+|. |.+-..|+..|+..+- ..+||.
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~-------~~~C~i 47 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESG-------NKTCEI 47 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcC-------CCcCCC
Confidence 48899984333444556674 8899999999999653 237874
No 65
>KOG1734|consensus
Probab=93.75 E-value=0.061 Score=40.16 Aligned_cols=57 Identities=25% Similarity=0.456 Sum_probs=43.2
Q ss_pred CCccccccccccCCCC--------CcccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCccccccccHHHHh
Q psy7604 31 SSKSKCEICFTNMPST--------LMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGTVM 96 (118)
Q Consensus 31 ~~~~~C~IC~~~~~~~--------~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~~~~i~ 96 (118)
.+...|.||-..+..+ +...|.|+|.|-..|+++|... |+ .-.||- |++.++...+.
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWciv-----GK--kqtCPY--CKekVdl~rmf 286 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIV-----GK--KQTCPY--CKEKVDLKRMF 286 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheee-----cC--CCCCch--HHHHhhHhhhc
Confidence 3566899999876432 4678999999999999999874 32 357995 99988765443
No 66
>PHA03096 p28-like protein; Provisional
Probab=93.49 E-value=0.049 Score=40.92 Aligned_cols=37 Identities=24% Similarity=0.460 Sum_probs=29.2
Q ss_pred cccccccccCCCC----C-c-ccCCCCccchHHHHHHHHHHHh
Q psy7604 34 SKCEICFTNMPST----L-M-TGLECSHRFCTQCWCEYLTTKI 70 (118)
Q Consensus 34 ~~C~IC~~~~~~~----~-~-~~l~CgH~fC~~C~~~y~~~~i 70 (118)
..|+||++..... . + ....|.|.||..|.+.|...+.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~ 221 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESL 221 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhh
Confidence 7899999986421 1 2 2349999999999999999876
No 67
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=92.99 E-value=0.032 Score=35.08 Aligned_cols=33 Identities=18% Similarity=0.525 Sum_probs=27.3
Q ss_pred CCccccccccccCCCCCcccCCCCccchHHHHH
Q psy7604 31 SSKSKCEICFTNMPSTLMTGLECSHRFCTQCWC 63 (118)
Q Consensus 31 ~~~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~ 63 (118)
++...|++|...+..+.+...+|||.|...|.+
T Consensus 76 ~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 456679999999876667778999999999864
No 68
>KOG0297|consensus
Probab=92.59 E-value=0.047 Score=42.68 Aligned_cols=37 Identities=30% Similarity=0.675 Sum_probs=30.1
Q ss_pred CCCccccccccccCCCCCccc-CCCCccchHHHHHHHHHH
Q psy7604 30 TSSKSKCEICFTNMPSTLMTG-LECSHRFCTQCWCEYLTT 68 (118)
Q Consensus 30 ~~~~~~C~IC~~~~~~~~~~~-l~CgH~fC~~C~~~y~~~ 68 (118)
......|++|...+ .+.+. ..|||.||..|+..++..
T Consensus 18 ~~~~l~C~~C~~vl--~~p~~~~~cgh~fC~~C~~~~~~~ 55 (391)
T KOG0297|consen 18 LDENLLCPICMSVL--RDPVQTTTCGHRFCAGCLLESLSN 55 (391)
T ss_pred CcccccCccccccc--cCCCCCCCCCCcccccccchhhcc
Confidence 45678999999887 34444 699999999999998876
No 69
>KOG0827|consensus
Probab=92.58 E-value=0.045 Score=42.69 Aligned_cols=51 Identities=24% Similarity=0.651 Sum_probs=35.6
Q ss_pred ccccccccccCCCC-CcccC-CCCccchHHHHHHHHHHHhhhcCCceeeecCCcccccccc
Q psy7604 33 KSKCEICFTNMPST-LMTGL-ECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVD 91 (118)
Q Consensus 33 ~~~C~IC~~~~~~~-~~~~l-~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~ 91 (118)
...|.||-+-++.. +.-.. .|||.|-..|+.+|++..-. .-.||. |+..++
T Consensus 4 ~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps------~R~cpi--c~ik~~ 56 (465)
T KOG0827|consen 4 MAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPS------NRGCPI--CQIKLQ 56 (465)
T ss_pred cceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCc------cCCCCc--eeeccc
Confidence 56899996666543 34445 59999999999999986531 246885 664333
No 70
>KOG4172|consensus
Probab=92.33 E-value=0.067 Score=30.44 Aligned_cols=46 Identities=20% Similarity=0.551 Sum_probs=32.5
Q ss_pred cccccccccCCCCCcccCCCCc-cchHHHHHHHHHHHhhhcCCceeeecCCcccccccc
Q psy7604 34 SKCEICFTNMPSTLMTGLECSH-RFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVD 91 (118)
Q Consensus 34 ~~C~IC~~~~~~~~~~~l~CgH-~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~ 91 (118)
.+|-||++.- .+.+.-.||| -.|-+|-.+.++. . .-.||. |+.+|.
T Consensus 8 dECTICye~p--vdsVlYtCGHMCmCy~Cg~rl~~~-~-------~g~CPi--CRapi~ 54 (62)
T KOG4172|consen 8 DECTICYEHP--VDSVLYTCGHMCMCYACGLRLKKA-L-------HGCCPI--CRAPIK 54 (62)
T ss_pred cceeeeccCc--chHHHHHcchHHhHHHHHHHHHHc-c-------CCcCcc--hhhHHH
Confidence 6799999873 4556669999 4888887766653 1 236995 887653
No 71
>KOG4367|consensus
Probab=92.13 E-value=0.066 Score=42.54 Aligned_cols=34 Identities=29% Similarity=0.562 Sum_probs=28.6
Q ss_pred CccccccccccCCCCCcccCCCCccchHHHHHHHHH
Q psy7604 32 SKSKCEICFTNMPSTLMTGLECSHRFCTQCWCEYLT 67 (118)
Q Consensus 32 ~~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y~~ 67 (118)
++..|+||...+ .+++.|+|+|..|+.|.+.-+.
T Consensus 3 eelkc~vc~~f~--~epiil~c~h~lc~~ca~~~~~ 36 (699)
T KOG4367|consen 3 EELKCPVCGSFY--REPIILPCSHNLCQACARNILV 36 (699)
T ss_pred ccccCceehhhc--cCceEeecccHHHHHHHHhhcc
Confidence 466799999887 6788899999999999986554
No 72
>KOG1952|consensus
Probab=91.41 E-value=0.18 Score=42.89 Aligned_cols=55 Identities=22% Similarity=0.474 Sum_probs=42.6
Q ss_pred CCCccccccccccCCCC-Cccc-CCCCccchHHHHHHHHHHHhhhcCCceeeecCCccccc
Q psy7604 30 TSSKSKCEICFTNMPST-LMTG-LECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNI 88 (118)
Q Consensus 30 ~~~~~~C~IC~~~~~~~-~~~~-l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~ 88 (118)
..+..+|.||++.+... .+++ -.|-|.|-..|++.|....-+ +|. ..-+|| .|..
T Consensus 188 ~~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek-~~~-~~WrCP--~Cqs 244 (950)
T KOG1952|consen 188 SNRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEK-TGQ-DGWRCP--ACQS 244 (950)
T ss_pred hcCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhh-ccC-ccccCC--cccc
Confidence 45788999999998654 4555 489999999999999998433 443 578999 4873
No 73
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=90.76 E-value=0.15 Score=24.51 Aligned_cols=23 Identities=22% Similarity=0.505 Sum_probs=16.4
Q ss_pred ccccccccCCCCCcccCCCCccc
Q psy7604 35 KCEICFTNMPSTLMTGLECSHRF 57 (118)
Q Consensus 35 ~C~IC~~~~~~~~~~~l~CgH~f 57 (118)
+||-|...++.....-..|||.|
T Consensus 2 ~CP~C~~~V~~~~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPESAKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhhcCcCCCCCCCC
Confidence 58888888765444556788876
No 74
>KOG4445|consensus
Probab=90.63 E-value=0.2 Score=38.00 Aligned_cols=40 Identities=28% Similarity=0.595 Sum_probs=30.9
Q ss_pred CCccccccccccCCCCC-cccCCCCccchHHHHHHHHHHHh
Q psy7604 31 SSKSKCEICFTNMPSTL-MTGLECSHRFCTQCWCEYLTTKI 70 (118)
Q Consensus 31 ~~~~~C~IC~~~~~~~~-~~~l~CgH~fC~~C~~~y~~~~i 70 (118)
-....|.||+--+..++ ++...|.|.|-..|+..||....
T Consensus 113 ~p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~ 153 (368)
T KOG4445|consen 113 HPNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECL 153 (368)
T ss_pred CCCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHH
Confidence 34567888877665455 77789999999999999997643
No 75
>KOG3002|consensus
Probab=90.31 E-value=0.37 Score=36.50 Aligned_cols=30 Identities=23% Similarity=0.737 Sum_probs=22.7
Q ss_pred CCCccccccccccCCCCCcccCCC--CccchHHHH
Q psy7604 30 TSSKSKCEICFTNMPSTLMTGLEC--SHRFCTQCW 62 (118)
Q Consensus 30 ~~~~~~C~IC~~~~~~~~~~~l~C--gH~fC~~C~ 62 (118)
..+-.+||||++.+.. ..+.| ||..|.+|-
T Consensus 45 ~~~lleCPvC~~~l~~---Pi~QC~nGHlaCssC~ 76 (299)
T KOG3002|consen 45 DLDLLDCPVCFNPLSP---PIFQCDNGHLACSSCR 76 (299)
T ss_pred chhhccCchhhccCcc---cceecCCCcEehhhhh
Confidence 3456799999999732 23455 899999998
No 76
>KOG0804|consensus
Probab=89.68 E-value=0.26 Score=39.15 Aligned_cols=38 Identities=21% Similarity=0.594 Sum_probs=28.7
Q ss_pred CCCccccccccccCCCC--CcccCCCCccchHHHHHHHHH
Q psy7604 30 TSSKSKCEICFTNMPST--LMTGLECSHRFCTQCWCEYLT 67 (118)
Q Consensus 30 ~~~~~~C~IC~~~~~~~--~~~~l~CgH~fC~~C~~~y~~ 67 (118)
..+..+||||++-++.+ .+....|.|.|--.|+..|..
T Consensus 172 ~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~ 211 (493)
T KOG0804|consen 172 LTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD 211 (493)
T ss_pred cccCCCcchhHhhcCccccceeeeecccccchHHHhhccc
Confidence 45667999999998543 245679999999999876543
No 77
>KOG2034|consensus
Probab=89.51 E-value=0.22 Score=42.53 Aligned_cols=40 Identities=15% Similarity=0.393 Sum_probs=33.4
Q ss_pred CCccccccccccCCCCCcccCCCCccchHHHHHHHHHHHh
Q psy7604 31 SSKSKCEICFTNMPSTLMTGLECSHRFCTQCWCEYLTTKI 70 (118)
Q Consensus 31 ~~~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y~~~~i 70 (118)
.+...|.+|...+-...++..+|||.|-++|+..++..-.
T Consensus 815 ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~~~~ 854 (911)
T KOG2034|consen 815 EPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVLSLL 854 (911)
T ss_pred cCccchHHhcchhhcCcceeeeccchHHHHHHHHHHHccc
Confidence 4567899999998777778889999999999998876543
No 78
>KOG3970|consensus
Probab=89.10 E-value=0.57 Score=34.25 Aligned_cols=56 Identities=23% Similarity=0.402 Sum_probs=42.1
Q ss_pred ccccccccccCCCCCcccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCcccccccc
Q psy7604 33 KSKCEICFTNMPSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVD 91 (118)
Q Consensus 33 ~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~ 91 (118)
.-.|..|-..+...+.+.|.|-|.|-..|+.+....--..... ..-+||. |+..|=
T Consensus 50 ~pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAP-aGyqCP~--Cs~eiF 105 (299)
T KOG3970|consen 50 NPNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAP-AGYQCPC--CSQEIF 105 (299)
T ss_pred CCCCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCC-CcccCCC--CCCccC
Confidence 4569999998877889999999999999999887753321111 3578994 886653
No 79
>KOG3039|consensus
Probab=88.81 E-value=0.26 Score=36.44 Aligned_cols=57 Identities=12% Similarity=0.234 Sum_probs=42.3
Q ss_pred CCccccccccccCCCC-Cccc-CCCCccchHHHHHHHHHHHhhhcCCceeeecCCccccccccHHHHhcc
Q psy7604 31 SSKSKCEICFTNMPST-LMTG-LECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGTVMRL 98 (118)
Q Consensus 31 ~~~~~C~IC~~~~~~~-~~~~-l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~~~~i~~l 98 (118)
+..+.|+||-+.+... .... -+|||.||.+|...+|.. + ..||. |...+.+.+|..|
T Consensus 219 s~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~----D-----~v~pv--~d~plkdrdiI~L 277 (303)
T KOG3039|consen 219 SKRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRK----D-----MVDPV--TDKPLKDRDIIGL 277 (303)
T ss_pred ccceecccchhhhcCccceEEeccCCcEeeHHHHHHhccc----c-----ccccC--CCCcCcccceEee
Confidence 4678999999998543 2333 499999999999888762 2 34774 8888888877654
No 80
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=88.79 E-value=0.15 Score=28.95 Aligned_cols=47 Identities=23% Similarity=0.439 Sum_probs=31.0
Q ss_pred ccccccccccCCCCCcccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCccccccccHHH
Q psy7604 33 KSKCEICFTNMPSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGT 94 (118)
Q Consensus 33 ~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~~~~ 94 (118)
...|-.|...- .....++|||..|..||-. . .---||- |...+..++
T Consensus 7 ~~~~~~~~~~~--~~~~~~pCgH~I~~~~f~~----------~-rYngCPf--C~~~~~~~~ 53 (55)
T PF14447_consen 7 EQPCVFCGFVG--TKGTVLPCGHLICDNCFPG----------E-RYNGCPF--CGTPFEFDD 53 (55)
T ss_pred ceeEEEccccc--cccccccccceeeccccCh----------h-hccCCCC--CCCcccCCC
Confidence 34555565442 4457789999999999842 1 2345995 888776544
No 81
>KOG3579|consensus
Probab=88.56 E-value=0.48 Score=35.74 Aligned_cols=64 Identities=23% Similarity=0.631 Sum_probs=43.7
Q ss_pred CCccccccccccCCCCCcccCCC----CccchHHHHHHHHHHHhhhcCCceeeecCC-cccccc---cc----HHHHhcc
Q psy7604 31 SSKSKCEICFTNMPSTLMTGLEC----SHRFCTQCWCEYLTTKIIQEGMGQTIACAA-HGCNIL---VD----DGTVMRL 98 (118)
Q Consensus 31 ~~~~~C~IC~~~~~~~~~~~l~C----gH~fC~~C~~~y~~~~i~~~g~~~~i~CP~-~~C~~~---i~----~~~i~~l 98 (118)
.....|-+|-+-+....+ ..| .|.||.-|-++.|+.+-. . ..+.||. .+|..+ |+ .-.|-.|
T Consensus 266 ~apLcCTLC~ERLEDTHF--VQCPSVp~HKFCFPCSResIK~Qg~-s---gevYCPSGdkCPLvgS~vPWAFMQGEIatI 339 (352)
T KOG3579|consen 266 SAPLCCTLCHERLEDTHF--VQCPSVPSHKFCFPCSRESIKQQGA-S---GEVYCPSGDKCPLVGSNVPWAFMQGEIATI 339 (352)
T ss_pred CCceeehhhhhhhccCce--eecCCCcccceecccCHHHHHhhcC-C---CceeCCCCCcCcccCCcccHHHhhhhHHHH
Confidence 345789999998844433 344 799999999999997643 2 4689997 457643 22 3455566
Q ss_pred cC
Q psy7604 99 VR 100 (118)
Q Consensus 99 l~ 100 (118)
|.
T Consensus 340 La 341 (352)
T KOG3579|consen 340 LA 341 (352)
T ss_pred hc
Confidence 65
No 82
>KOG3800|consensus
Probab=88.39 E-value=0.74 Score=34.67 Aligned_cols=57 Identities=23% Similarity=0.551 Sum_probs=37.0
Q ss_pred ccccccccCCCC-Ccc--cCCCCccchHHHHHHHHHHHhhhcCCceeeecCCccccccccHHHH-hcccCC
Q psy7604 35 KCEICFTNMPST-LMT--GLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGTV-MRLVRD 101 (118)
Q Consensus 35 ~C~IC~~~~~~~-~~~--~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~~~~i-~~ll~~ 101 (118)
.||+|-.+.-.+ ++. .-.|||..|.+|+-..+. -| .-.|| +|..++-.+-+ .+++.|
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~-----~g---~~~Cp--eC~~iLRk~nfr~q~fED 62 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFS-----LG---PAQCP--ECMVILRKNNFRVQTFED 62 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHh-----cC---CCCCC--cccchhhhcccchhhcch
Confidence 489998775322 222 229999999999877665 23 34799 79987755433 234433
No 83
>KOG1941|consensus
Probab=88.07 E-value=0.2 Score=39.37 Aligned_cols=51 Identities=29% Similarity=0.617 Sum_probs=38.7
Q ss_pred CccccccccccCCC--CCcccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCcccccccc
Q psy7604 32 SKSKCEICFTNMPS--TLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVD 91 (118)
Q Consensus 32 ~~~~C~IC~~~~~~--~~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~ 91 (118)
.+..|+.|-+.+.. +..-.|+|.|.|-..|+..|+.. +| .-.|| .|+...+
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~----n~---~rsCP--~CrklrS 416 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILEN----NG---TRSCP--NCRKLRS 416 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHh----CC---CCCCc--cHHHHHh
Confidence 46689999998753 34567899999999999999953 33 35799 5985443
No 84
>PF14445 Prok-RING_2: Prokaryotic RING finger family 2
Probab=87.61 E-value=0.095 Score=29.28 Aligned_cols=35 Identities=23% Similarity=0.764 Sum_probs=28.4
Q ss_pred CCCccccccccccCCCCCccc-CCCCccchHHHHHH
Q psy7604 30 TSSKSKCEICFTNMPSTLMTG-LECSHRFCTQCWCE 64 (118)
Q Consensus 30 ~~~~~~C~IC~~~~~~~~~~~-l~CgH~fC~~C~~~ 64 (118)
+...++|..|-+..+..+... .-||.--|.+||+.
T Consensus 4 SFsry~CDLCn~~~p~~~LRQCvlCGRWaC~sCW~d 39 (57)
T PF14445_consen 4 SFSRYSCDLCNSSHPISELRQCVLCGRWACNSCWQD 39 (57)
T ss_pred HHhhHhHHhhcccCcHHHHHHHhhhchhhhhhhhhh
Confidence 456889999999987666544 48999999999985
No 85
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=87.58 E-value=0.22 Score=43.21 Aligned_cols=52 Identities=19% Similarity=0.590 Sum_probs=37.2
Q ss_pred CCccccccccccCCCCC-----cccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCcccccccc
Q psy7604 31 SSKSKCEICFTNMPSTL-----MTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVD 91 (118)
Q Consensus 31 ~~~~~C~IC~~~~~~~~-----~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~ 91 (118)
+.-.+|.|||.-+...+ -.-..|.|.|...|+..|+++. | .-+||- |+..++
T Consensus 1467 sG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss----~---~s~CPl--CRseit 1523 (1525)
T COG5219 1467 SGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASS----A---RSNCPL--CRSEIT 1523 (1525)
T ss_pred CCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhc----C---CCCCCc--cccccc
Confidence 45568999997653211 1234799999999999999964 3 247995 987664
No 86
>KOG3161|consensus
Probab=87.41 E-value=0.16 Score=42.09 Aligned_cols=33 Identities=24% Similarity=0.572 Sum_probs=25.6
Q ss_pred ccccccccccCCCC--CcccCCCCccchHHHHHHH
Q psy7604 33 KSKCEICFTNMPST--LMTGLECSHRFCTQCWCEY 65 (118)
Q Consensus 33 ~~~C~IC~~~~~~~--~~~~l~CgH~fC~~C~~~y 65 (118)
-..|+||+..+-.+ ..+++.|||..|+-|.+..
T Consensus 11 ~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~l 45 (861)
T KOG3161|consen 11 LLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLL 45 (861)
T ss_pred HhhchHHHHHHHHHhcCcccccccchHHHHHHHhH
Confidence 34699998776432 4688999999999998653
No 87
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=87.34 E-value=1.2 Score=34.03 Aligned_cols=45 Identities=27% Similarity=0.667 Sum_probs=32.8
Q ss_pred ccccccccccCCCCCcccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCccccc
Q psy7604 33 KSKCEICFTNMPSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNI 88 (118)
Q Consensus 33 ~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~ 88 (118)
...|+.|-.-+ .+.+....|+|.||.+|+..-+.. ....||. |..
T Consensus 274 ~LkCplc~~Ll-rnp~kT~cC~~~fc~eci~~al~d--------sDf~Cpn--C~r 318 (427)
T COG5222 274 SLKCPLCHCLL-RNPMKTPCCGHTFCDECIGTALLD--------SDFKCPN--CSR 318 (427)
T ss_pred cccCcchhhhh-hCcccCccccchHHHHHHhhhhhh--------ccccCCC--ccc
Confidence 37899998765 344555799999999998765542 2478995 865
No 88
>KOG0825|consensus
Probab=87.32 E-value=0.15 Score=43.31 Aligned_cols=19 Identities=11% Similarity=0.141 Sum_probs=11.9
Q ss_pred CCCccchHHHHHHHHHHHh
Q psy7604 52 ECSHRFCTQCWCEYLTTKI 70 (118)
Q Consensus 52 ~CgH~fC~~C~~~y~~~~i 70 (118)
.|+|.+|-.|++.+...-+
T Consensus 120 ~~~~~~CP~Ci~s~~DqL~ 138 (1134)
T KOG0825|consen 120 THVENQCPNCLKSCNDQLE 138 (1134)
T ss_pred hhhhhhhhHHHHHHHHHhh
Confidence 4666666666666665443
No 89
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=86.79 E-value=0.93 Score=34.74 Aligned_cols=54 Identities=19% Similarity=0.297 Sum_probs=36.3
Q ss_pred CCccccccccccCCC-CCcccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCccccccccH
Q psy7604 31 SSKSKCEICFTNMPS-TLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDD 92 (118)
Q Consensus 31 ~~~~~C~IC~~~~~~-~~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~~ 92 (118)
-+-++||+=-+.-.. +.++.+.|||..-+.=+.+ +..+|. ..++||- |...-..
T Consensus 334 Hs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~-----LS~nG~-~~FKCPY--CP~~~~~ 388 (396)
T COG5109 334 HSLFICPVLKELCTDENPPVMLECGHVISKEALSV-----LSQNGV-LSFKCPY--CPEMSKY 388 (396)
T ss_pred cceeeccccHhhhcccCCCeeeeccceeeHHHHHH-----HhhcCc-EEeeCCC--CCcchhh
Confidence 457899996655433 4578899999988764443 323665 5899995 8754333
No 90
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=86.67 E-value=0.71 Score=30.98 Aligned_cols=54 Identities=15% Similarity=0.371 Sum_probs=40.1
Q ss_pred CCCccccccccccCCCCCccc--CCCCccchHHHHHHHHHHHhhhcCCceeeecCCcccccccc
Q psy7604 30 TSSKSKCEICFTNMPSTLMTG--LECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVD 91 (118)
Q Consensus 30 ~~~~~~C~IC~~~~~~~~~~~--l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~ 91 (118)
...-.+|.||-|....+.+.. --||-..|..|..+.|...- ....||. |+..+-
T Consensus 77 d~~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~------~ypvCPv--CkTSFK 132 (140)
T PF05290_consen 77 DPKLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCN------LYPVCPV--CKTSFK 132 (140)
T ss_pred CCCceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcc------cCCCCCc--cccccc
Confidence 346789999999864333333 36899999999999999763 3678995 887653
No 91
>KOG4275|consensus
Probab=86.39 E-value=0.22 Score=37.60 Aligned_cols=27 Identities=37% Similarity=0.793 Sum_probs=22.3
Q ss_pred ccccccccccCCCCCcccCCCCc-cchHHH
Q psy7604 33 KSKCEICFTNMPSTLMTGLECSH-RFCTQC 61 (118)
Q Consensus 33 ~~~C~IC~~~~~~~~~~~l~CgH-~fC~~C 61 (118)
...|-|||+.- .+.+.|.||| ..|..|
T Consensus 300 ~~LC~ICmDaP--~DCvfLeCGHmVtCt~C 327 (350)
T KOG4275|consen 300 RRLCAICMDAP--RDCVFLECGHMVTCTKC 327 (350)
T ss_pred HHHHHHHhcCC--cceEEeecCcEEeehhh
Confidence 67899999873 6789999999 577766
No 92
>KOG1493|consensus
Probab=86.36 E-value=0.19 Score=30.55 Aligned_cols=49 Identities=22% Similarity=0.397 Sum_probs=34.1
Q ss_pred cccccccccCCC---------CCc--ccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCccccccc
Q psy7604 34 SKCEICFTNMPS---------TLM--TGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILV 90 (118)
Q Consensus 34 ~~C~IC~~~~~~---------~~~--~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i 90 (118)
.+|+||-..|.. ++. +.-.|.|.|-.-|+..++.++-+ + -.|| .|+...
T Consensus 21 e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~ts-q-----~~CP--mcRq~~ 80 (84)
T KOG1493|consen 21 ETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTS-Q-----GQCP--MCRQTW 80 (84)
T ss_pred CccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccc-c-----ccCC--cchhee
Confidence 378888877643 222 22279999999999999997753 2 3699 487654
No 93
>KOG3268|consensus
Probab=85.78 E-value=1.5 Score=31.06 Aligned_cols=59 Identities=15% Similarity=0.387 Sum_probs=38.7
Q ss_pred CCccccccccccCC-C----CCcccCCCCccchHHHHHHHHHHHhhhcCCce---eeecCCccccccccH
Q psy7604 31 SSKSKCEICFTNMP-S----TLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQ---TIACAAHGCNILVDD 92 (118)
Q Consensus 31 ~~~~~C~IC~~~~~-~----~~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~---~i~CP~~~C~~~i~~ 92 (118)
.....|+|||.--- . ...-...||..|-.-|+..|++.-+. ..++. .=.||- |..++..
T Consensus 163 d~~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilT-sRQSFdiiFGeCPY--CS~Pial 229 (234)
T KOG3268|consen 163 DELGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILT-SRQSFDIIFGECPY--CSDPIAL 229 (234)
T ss_pred hhhhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhh-ccceeeeeeccCCC--CCCccee
Confidence 44567888885421 1 12234689999999999999987663 33332 336885 8876653
No 94
>KOG2979|consensus
Probab=84.36 E-value=1.1 Score=33.15 Aligned_cols=46 Identities=20% Similarity=0.397 Sum_probs=33.3
Q ss_pred cccccccccCCCCCcccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCcccc
Q psy7604 34 SKCEICFTNMPSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCN 87 (118)
Q Consensus 34 ~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~ 87 (118)
..|||=+-.+ ..++++-.|||.|=++=+.+++... ..++||..+|.
T Consensus 177 ~rdPis~~~I-~nPviSkkC~HvydrDsI~~~l~~~-------~~i~CPv~gC~ 222 (262)
T KOG2979|consen 177 NRDPISKKPI-VNPVISKKCGHVYDRDSIMQILCDE-------ITIRCPVLGCE 222 (262)
T ss_pred ccCchhhhhh-hchhhhcCcCcchhhhhHHHHhccC-------ceeecccccCC
Confidence 4688755444 2456788999999887666665532 36899999999
No 95
>KOG3053|consensus
Probab=80.63 E-value=3.2 Score=30.93 Aligned_cols=56 Identities=20% Similarity=0.388 Sum_probs=37.7
Q ss_pred CCccccccccccCCCCCc--ccCCCC-----ccchHHHHHHHHHHHhhhcCCceeeecCCcccccc
Q psy7604 31 SSKSKCEICFTNMPSTLM--TGLECS-----HRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNIL 89 (118)
Q Consensus 31 ~~~~~C~IC~~~~~~~~~--~~l~Cg-----H~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~ 89 (118)
..+..|=|||.....+.. ..-+|. |-.-.+|+..|+..+-. ......+.||+ |+..
T Consensus 18 e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~-~n~~q~V~C~Q--CqTE 80 (293)
T KOG3053|consen 18 ELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQR-GNPLQTVSCPQ--CQTE 80 (293)
T ss_pred ccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhc-CCCCceeechh--hcch
Confidence 456789999988543221 223453 45889999999998863 22236899996 8753
No 96
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=78.97 E-value=1.5 Score=34.07 Aligned_cols=33 Identities=24% Similarity=0.668 Sum_probs=25.0
Q ss_pred CCccccccccccCCCCCcccCCCCccchHHHHHHH
Q psy7604 31 SSKSKCEICFTNMPSTLMTGLECSHRFCTQCWCEY 65 (118)
Q Consensus 31 ~~~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y 65 (118)
.+...|.||.... .-...++|+|..|..|--..
T Consensus 59 Een~~C~ICA~~~--TYs~~~PC~H~~CH~Ca~Rl 91 (493)
T COG5236 59 EENMNCQICAGST--TYSARYPCGHQICHACAVRL 91 (493)
T ss_pred cccceeEEecCCc--eEEEeccCCchHHHHHHHHH
Confidence 3566899999886 33445799999999996543
No 97
>KOG4362|consensus
Probab=78.69 E-value=0.73 Score=38.56 Aligned_cols=53 Identities=25% Similarity=0.553 Sum_probs=39.2
Q ss_pred CCccccccccccCCCCCcccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCccccccccHH
Q psy7604 31 SSKSKCEICFTNMPSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDG 93 (118)
Q Consensus 31 ~~~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~~~ 93 (118)
....+|+||+..+ .+...+.|.|.||..||..-+..+- + ...||. |+..++-.
T Consensus 19 ~k~lEc~ic~~~~--~~p~~~kc~~~~l~~~~n~~f~~~~---~---~~~~~l--c~~~~eK~ 71 (684)
T KOG4362|consen 19 QKILECPICLEHV--KEPSLLKCDHIFLKFCLNKLFESKK---G---PKQCAL--CKSDIEKR 71 (684)
T ss_pred hhhccCCceeEEe--eccchhhhhHHHHhhhhhceeeccC---c---cccchh--hhhhhhhh
Confidence 3467899999987 4457889999999999998877542 1 467773 76555443
No 98
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=78.38 E-value=2.4 Score=24.96 Aligned_cols=19 Identities=21% Similarity=0.679 Sum_probs=13.1
Q ss_pred cchHHHHHHHHHHHhhhcC
Q psy7604 56 RFCTQCWCEYLTTKIIQEG 74 (118)
Q Consensus 56 ~fC~~C~~~y~~~~i~~~g 74 (118)
-||++|+..|....-.+.|
T Consensus 11 gFCRNCLskWy~~aA~~~g 29 (68)
T PF06844_consen 11 GFCRNCLSKWYREAAEERG 29 (68)
T ss_dssp S--HHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 4999999999998764333
No 99
>PF13834 DUF4193: Domain of unknown function (DUF4193)
Probab=77.28 E-value=0.91 Score=28.86 Aligned_cols=34 Identities=18% Similarity=0.520 Sum_probs=24.0
Q ss_pred CCCCCccccccccccCCCCCcccCCCCccchHHH
Q psy7604 28 PSTSSKSKCEICFTNMPSTLMTGLECSHRFCTQC 61 (118)
Q Consensus 28 ~~~~~~~~C~IC~~~~~~~~~~~l~CgH~fC~~C 61 (118)
|....+|+|.-||--...+....-.=|+.+|++|
T Consensus 65 P~q~DEFTCssCFLV~HRSqLa~~~~g~~iC~DC 98 (99)
T PF13834_consen 65 PKQADEFTCSSCFLVHHRSQLAREKDGQPICRDC 98 (99)
T ss_pred cCCCCceeeeeeeeEechhhhccccCCCEecccc
Confidence 4567899999999775444444333478888887
No 100
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=77.19 E-value=2.8 Score=23.71 Aligned_cols=34 Identities=21% Similarity=0.585 Sum_probs=25.9
Q ss_pred CCccccccccccCC-CCCcc-cCCCCccchHHHHHH
Q psy7604 31 SSKSKCEICFTNMP-STLMT-GLECSHRFCTQCWCE 64 (118)
Q Consensus 31 ~~~~~C~IC~~~~~-~~~~~-~l~CgH~fC~~C~~~ 64 (118)
.....|++|-+.+. ..+.+ -..||-.+-++||..
T Consensus 3 ~~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 3 YEGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred ccCccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 34567999999985 34544 469999999999953
No 101
>KOG0309|consensus
Probab=75.13 E-value=3.4 Score=35.33 Aligned_cols=47 Identities=28% Similarity=0.558 Sum_probs=34.9
Q ss_pred CccccccccccCCCCCcccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCccccc
Q psy7604 32 SKSKCEICFTNMPSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNI 88 (118)
Q Consensus 32 ~~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~ 88 (118)
..+.|.||--.+...-.+-..|+|..-.+|...|+++ |. .||. ||..
T Consensus 1027 ~~~~C~~C~l~V~gss~~Cg~C~Hv~H~sc~~eWf~~-----gd----~Cps-GCGC 1073 (1081)
T KOG0309|consen 1027 FTFQCAICHLAVRGSSNFCGTCGHVGHTSCMMEWFRT-----GD----VCPS-GCGC 1073 (1081)
T ss_pred ceeeeeeEeeEeeccchhhccccccccHHHHHHHHhc-----CC----cCCC-CCCc
Confidence 4456888877765555667899999999999999984 32 5886 5543
No 102
>PLN02436 cellulose synthase A
Probab=74.86 E-value=2.5 Score=37.21 Aligned_cols=50 Identities=32% Similarity=0.713 Sum_probs=34.1
Q ss_pred CccccccccccCCCC---C-cccC-CCCccchHHHHHHHHHHHhhhcCCceeeecCCcccccccc
Q psy7604 32 SKSKCEICFTNMPST---L-MTGL-ECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVD 91 (118)
Q Consensus 32 ~~~~C~IC~~~~~~~---~-~~~l-~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~ 91 (118)
....|.||-|++... + ++.- .|+-..|+.|+ +|-+ .+|. -.||+ |+....
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cy-eyer----~eg~---~~Cpq--ckt~Y~ 89 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCY-EYER----REGN---QACPQ--CKTRYK 89 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCCccccchh-hhhh----hcCC---ccCcc--cCCchh
Confidence 456899999997432 3 3333 68889999999 5554 2554 47996 876543
No 103
>PLN02189 cellulose synthase
Probab=74.56 E-value=2.6 Score=37.06 Aligned_cols=51 Identities=29% Similarity=0.648 Sum_probs=34.6
Q ss_pred CCccccccccccCCCC---C-cccC-CCCccchHHHHHHHHHHHhhhcCCceeeecCCcccccccc
Q psy7604 31 SSKSKCEICFTNMPST---L-MTGL-ECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVD 91 (118)
Q Consensus 31 ~~~~~C~IC~~~~~~~---~-~~~l-~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~ 91 (118)
.....|.||.+++... + ++.- .|+-..|+.|+ +|-+ .+|. -.||+ |+....
T Consensus 32 ~~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cy-eyer----~eg~---q~Cpq--Ckt~Y~ 87 (1040)
T PLN02189 32 LDGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCY-EYER----REGT---QNCPQ--CKTRYK 87 (1040)
T ss_pred ccCccccccccccCcCCCCCEEEeeccCCCccccchh-hhhh----hcCC---ccCcc--cCCchh
Confidence 3456899999997532 2 3333 68889999999 5544 2564 47996 876543
No 104
>KOG3039|consensus
Probab=73.79 E-value=3.6 Score=30.61 Aligned_cols=36 Identities=11% Similarity=0.049 Sum_probs=28.3
Q ss_pred cccccccccCCCCCcccCCCCccchHHHHHHHHHHHhh
Q psy7604 34 SKCEICFTNMPSTLMTGLECSHRFCTQCWCEYLTTKII 71 (118)
Q Consensus 34 ~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y~~~~i~ 71 (118)
--|..|+... .+++...=||.||++|+.+||-.+-+
T Consensus 44 dcCsLtLqPc--~dPvit~~GylfdrEaILe~ilaqKk 79 (303)
T KOG3039|consen 44 DCCSLTLQPC--RDPVITPDGYLFDREAILEYILAQKK 79 (303)
T ss_pred ceeeeecccc--cCCccCCCCeeeeHHHHHHHHHHHHH
Confidence 3688999887 45555566999999999999987743
No 105
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=73.60 E-value=4.8 Score=35.59 Aligned_cols=50 Identities=26% Similarity=0.618 Sum_probs=34.0
Q ss_pred CCccccccccccCCCC---C-ccc-CCCCccchHHHHHHHHHHHhhhcCCceeeecCCccccccc
Q psy7604 31 SSKSKCEICFTNMPST---L-MTG-LECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILV 90 (118)
Q Consensus 31 ~~~~~C~IC~~~~~~~---~-~~~-l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i 90 (118)
.....|.||-|++... + ++. -.|+-..|+.|+ +|=+ + +|. -.||+ |+...
T Consensus 15 ~~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCY-EYEr---~-eG~---q~CPq--CktrY 69 (1079)
T PLN02638 15 GGGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCY-EYER---K-DGN---QSCPQ--CKTKY 69 (1079)
T ss_pred cCCceeeecccccCcCCCCCEEEEeccCCCccccchh-hhhh---h-cCC---ccCCc--cCCch
Confidence 3566899999997532 2 333 378888999999 4433 2 564 37996 87654
No 106
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=71.32 E-value=6 Score=27.36 Aligned_cols=51 Identities=22% Similarity=0.496 Sum_probs=34.2
Q ss_pred CCCccccccccccCCCCCcccC-CCCc---cchHHHHHHHHHHHhhhcCCceeeecCCcccccccc
Q psy7604 30 TSSKSKCEICFTNMPSTLMTGL-ECSH---RFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVD 91 (118)
Q Consensus 30 ~~~~~~C~IC~~~~~~~~~~~l-~CgH---~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~ 91 (118)
+..+..|-||+++.. +.... .|.. ..-++|++.|+..+ ...+|+. |+....
T Consensus 5 s~~~~~CRIC~~~~~--~~~~PC~CkGs~k~VH~sCL~rWi~~s-------~~~~Cei--C~~~Y~ 59 (162)
T PHA02825 5 SLMDKCCWICKDEYD--VVTNYCNCKNENKIVHKECLEEWINTS-------KNKSCKI--CNGPYN 59 (162)
T ss_pred CCCCCeeEecCCCCC--CccCCcccCCCchHHHHHHHHHHHhcC-------CCCcccc--cCCeEE
Confidence 345678999998853 22222 5544 46899999999842 2468995 876554
No 107
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=70.75 E-value=0.84 Score=26.48 Aligned_cols=36 Identities=22% Similarity=0.474 Sum_probs=18.0
Q ss_pred CCccccccccccCCCCC--cccCCCCccchHHHHHHHH
Q psy7604 31 SSKSKCEICFTNMPSTL--MTGLECSHRFCTQCWCEYL 66 (118)
Q Consensus 31 ~~~~~C~IC~~~~~~~~--~~~l~CgH~fC~~C~~~y~ 66 (118)
.+...|.+|...|.... ..=-.||+.||.+|....+
T Consensus 7 ~~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~ 44 (69)
T PF01363_consen 7 SEASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRI 44 (69)
T ss_dssp GG-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEE
T ss_pred CCCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEE
Confidence 45668999999984321 1224899999999986544
No 108
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=69.76 E-value=6.3 Score=34.75 Aligned_cols=52 Identities=23% Similarity=0.599 Sum_probs=34.9
Q ss_pred CCCccccccccccCCCC---C-ccc-CCCCccchHHHHHHHHHHHhhhcCCceeeecCCcccccccc
Q psy7604 30 TSSKSKCEICFTNMPST---L-MTG-LECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVD 91 (118)
Q Consensus 30 ~~~~~~C~IC~~~~~~~---~-~~~-l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~ 91 (118)
+.....|.||-|++..+ + ++. -.|+-..|+.|+ +|= .+ +|. -.||+ |+....
T Consensus 12 ~~~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cy-eye---~~-~g~---~~cp~--c~t~y~ 68 (1044)
T PLN02915 12 SADAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCY-EYE---RS-EGN---QCCPQ--CNTRYK 68 (1044)
T ss_pred CCCcchhhccccccCcCCCCCEEEEeccCCCccccchh-hhh---hh-cCC---ccCCc--cCCchh
Confidence 34677899999997532 2 333 378888999999 443 32 564 47996 776543
No 109
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=68.98 E-value=4.1 Score=22.45 Aligned_cols=35 Identities=23% Similarity=0.462 Sum_probs=24.7
Q ss_pred cccccccccCCCCC--cccCCCCccchHHHHHHHHHH
Q psy7604 34 SKCEICFTNMPSTL--MTGLECSHRFCTQCWCEYLTT 68 (118)
Q Consensus 34 ~~C~IC~~~~~~~~--~~~l~CgH~fC~~C~~~y~~~ 68 (118)
..|.+|-..+.... ..-..||+.||.+|.......
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~~ 39 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIPL 39 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCeeec
Confidence 46888887764321 222489999999999877654
No 110
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=67.30 E-value=5.6 Score=24.22 Aligned_cols=50 Identities=22% Similarity=0.505 Sum_probs=20.5
Q ss_pred CCccccccccccCCC---CCc-cc-CCCCccchHHHHHHHHHHHhhhcCCceeeecCCccccccc
Q psy7604 31 SSKSKCEICFTNMPS---TLM-TG-LECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILV 90 (118)
Q Consensus 31 ~~~~~C~IC~~~~~~---~~~-~~-l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i 90 (118)
.....|.||-+++.. .++ ++ ..|+-..|+.|+. ..++ +|. -.||+ |+...
T Consensus 7 ~~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyE----YErk-eg~---q~Cpq--Ckt~y 61 (80)
T PF14569_consen 7 LNGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYE----YERK-EGN---QVCPQ--CKTRY 61 (80)
T ss_dssp -SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHH----HHHH-TS----SB-TT--T--B-
T ss_pred cCCcccccccCccccCCCCCEEEEEcccCCccchhHHH----HHhh-cCc---ccccc--cCCCc
Confidence 456789999999743 233 33 3889999999975 3443 564 36996 87544
No 111
>KOG0801|consensus
Probab=66.84 E-value=2.6 Score=29.39 Aligned_cols=28 Identities=21% Similarity=0.557 Sum_probs=20.3
Q ss_pred CCCccccccccccCCCCCc-ccCCCCccc
Q psy7604 30 TSSKSKCEICFTNMPSTLM-TGLECSHRF 57 (118)
Q Consensus 30 ~~~~~~C~IC~~~~~~~~~-~~l~CgH~f 57 (118)
.+...+|.||++++...+. ..|+|-..|
T Consensus 174 ~ddkGECvICLEdL~~GdtIARLPCLCIY 202 (205)
T KOG0801|consen 174 KDDKGECVICLEDLEAGDTIARLPCLCIY 202 (205)
T ss_pred cccCCcEEEEhhhccCCCceeccceEEEe
Confidence 4567899999999876554 457885443
No 112
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=65.69 E-value=17 Score=23.25 Aligned_cols=36 Identities=14% Similarity=0.370 Sum_probs=23.8
Q ss_pred CccchHHHHHHHHHHHhhhcCCceeeecCCcccccccc
Q psy7604 54 SHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVD 91 (118)
Q Consensus 54 gH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~ 91 (118)
.-.||..|+.......+.+-.....-.|| .|..+-+
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP--~CrgiCn 72 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCP--KCRGICN 72 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECC--CCCCeeC
Confidence 66899999998887766321112457899 4766543
No 113
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=65.00 E-value=3.7 Score=21.88 Aligned_cols=34 Identities=21% Similarity=0.605 Sum_probs=17.2
Q ss_pred cccccccCCCCCc-ccCCCCccchHHHHHHHHHHH
Q psy7604 36 CEICFTNMPSTLM-TGLECSHRFCTQCWCEYLTTK 69 (118)
Q Consensus 36 C~IC~~~~~~~~~-~~l~CgH~fC~~C~~~y~~~~ 69 (118)
|.+|.+-+..+.. ....|+=++-..|+..|++.+
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~ 35 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHR 35 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcC
Confidence 5677766533322 234688889999999999865
No 114
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=64.98 E-value=6.5 Score=24.14 Aligned_cols=37 Identities=27% Similarity=0.488 Sum_probs=24.9
Q ss_pred ccccccccccCCC-CCc-cc-CCCCccchHHHHHHHHHHH
Q psy7604 33 KSKCEICFTNMPS-TLM-TG-LECSHRFCTQCWCEYLTTK 69 (118)
Q Consensus 33 ~~~C~IC~~~~~~-~~~-~~-l~CgH~fC~~C~~~y~~~~ 69 (118)
..+|+-|...... ++. ++ -.|.|.|-.-|+..+|.++
T Consensus 31 m~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk 70 (88)
T COG5194 31 MGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTK 70 (88)
T ss_pred cCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhC
Confidence 4456666554322 232 22 3799999999999999973
No 115
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PLN02195 cellulose synthase A
Probab=64.70 E-value=6.5 Score=34.45 Aligned_cols=50 Identities=28% Similarity=0.547 Sum_probs=35.1
Q ss_pred CccccccccccCCCC---C-ccc-CCCCccchHHHHHHHHHHHhhhcCCceeeecCCcccccccc
Q psy7604 32 SKSKCEICFTNMPST---L-MTG-LECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVD 91 (118)
Q Consensus 32 ~~~~C~IC~~~~~~~---~-~~~-l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~ 91 (118)
....|.||-+++..+ + ++. -.|+-..|+.|+ +|=+ + +|. -.||+ |+....
T Consensus 5 ~~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCy-eyer---~-eg~---q~Cpq--Ckt~Yk 59 (977)
T PLN02195 5 GAPICATCGEEVGVDSNGEAFVACHECSYPLCKACL-EYEI---K-EGR---KVCLR--CGGPYD 59 (977)
T ss_pred CCccceecccccCcCCCCCeEEEeccCCCccccchh-hhhh---h-cCC---ccCCc--cCCccc
Confidence 455899999987532 2 333 378999999999 4433 2 564 47996 987776
No 117
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=64.45 E-value=5 Score=21.75 Aligned_cols=34 Identities=15% Similarity=0.353 Sum_probs=21.4
Q ss_pred cccccccCCCCCcccCC--CCc---cchHHHHHHHHHHH
Q psy7604 36 CEICFTNMPSTLMTGLE--CSH---RFCTQCWCEYLTTK 69 (118)
Q Consensus 36 C~IC~~~~~~~~~~~l~--CgH---~fC~~C~~~y~~~~ 69 (118)
|-||++....+.....+ |.- ..-.+|+.+|+..+
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~ 39 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRES 39 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHH
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhc
Confidence 67999986544423334 433 57788999999974
No 118
>KOG2789|consensus
Probab=64.13 E-value=2.6 Score=33.29 Aligned_cols=37 Identities=30% Similarity=0.744 Sum_probs=29.3
Q ss_pred CCCCccccccccccCCCCCcccCCCCccchHHHHHHH
Q psy7604 29 STSSKSKCEICFTNMPSTLMTGLECSHRFCTQCWCEY 65 (118)
Q Consensus 29 ~~~~~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y 65 (118)
.+.+..+|+|||--++...-..--|....|.+|+..+
T Consensus 70 ~~rr~~ecpicflyyps~~n~~rcC~~~Ic~ecf~~~ 106 (482)
T KOG2789|consen 70 TSRRKTECPICFLYYPSAKNLVRCCSETICGECFAPF 106 (482)
T ss_pred hccccccCceeeeecccccchhhhhccchhhhheecc
Confidence 3456789999999887555566789999999998764
No 119
>KOG2114|consensus
Probab=63.79 E-value=4.2 Score=35.02 Aligned_cols=41 Identities=22% Similarity=0.520 Sum_probs=31.7
Q ss_pred ccccccccccCCCCCcccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCccccc
Q psy7604 33 KSKCEICFTNMPSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNI 88 (118)
Q Consensus 33 ~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~ 88 (118)
...|..|--.+. -+++...|||.|-+.|+. ++ .-.|| .|..
T Consensus 840 ~skCs~C~~~Ld-lP~VhF~CgHsyHqhC~e---------~~---~~~CP--~C~~ 880 (933)
T KOG2114|consen 840 VSKCSACEGTLD-LPFVHFLCGHSYHQHCLE---------DK---EDKCP--KCLP 880 (933)
T ss_pred eeeecccCCccc-cceeeeecccHHHHHhhc---------cC---cccCC--ccch
Confidence 357999988863 356788999999999987 22 35799 5886
No 120
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=63.60 E-value=0.3 Score=29.11 Aligned_cols=40 Identities=20% Similarity=0.587 Sum_probs=19.7
Q ss_pred cccccccccCCCCCcccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCcccccccc
Q psy7604 34 SKCEICFTNMPSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVD 91 (118)
Q Consensus 34 ~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~ 91 (118)
..||.|-.++... + +|..|..|-+.|. ....|| +|...+.
T Consensus 2 ~~CP~C~~~L~~~-----~-~~~~C~~C~~~~~----------~~a~CP--dC~~~Le 41 (70)
T PF07191_consen 2 NTCPKCQQELEWQ-----G-GHYHCEACQKDYK----------KEAFCP--DCGQPLE 41 (70)
T ss_dssp -B-SSS-SBEEEE-----T-TEEEETTT--EEE----------EEEE-T--TT-SB-E
T ss_pred CcCCCCCCccEEe-----C-CEEECccccccce----------ecccCC--CcccHHH
Confidence 4789998775211 1 7888887765321 356788 4876654
No 121
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.03 E-value=7.5 Score=24.44 Aligned_cols=15 Identities=20% Similarity=0.720 Sum_probs=13.5
Q ss_pred cchHHHHHHHHHHHh
Q psy7604 56 RFCTQCWCEYLTTKI 70 (118)
Q Consensus 56 ~fC~~C~~~y~~~~i 70 (118)
-||++|+..|....-
T Consensus 42 gFCRNCLs~Wy~eaa 56 (104)
T COG3492 42 GFCRNCLSNWYREAA 56 (104)
T ss_pred HHHHHHHHHHHHHHH
Confidence 599999999999876
No 122
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=61.56 E-value=3.3 Score=26.85 Aligned_cols=33 Identities=21% Similarity=0.498 Sum_probs=21.3
Q ss_pred CccccccccccCCCC---CcccCCCCccchHHHHHH
Q psy7604 32 SKSKCEICFTNMPST---LMTGLECSHRFCTQCWCE 64 (118)
Q Consensus 32 ~~~~C~IC~~~~~~~---~~~~l~CgH~fC~~C~~~ 64 (118)
....|.+|..++..- ...-..|+|.+|..|-..
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~ 88 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY 88 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCCc
Confidence 456899999886421 223358999999988544
No 123
>KOG2930|consensus
Probab=60.06 E-value=6 Score=25.47 Aligned_cols=18 Identities=33% Similarity=0.818 Sum_probs=16.6
Q ss_pred CCCccchHHHHHHHHHHH
Q psy7604 52 ECSHRFCTQCWCEYLTTK 69 (118)
Q Consensus 52 ~CgH~fC~~C~~~y~~~~ 69 (118)
.|.|.|-.-|+.++|+++
T Consensus 80 ~CNHaFH~hCisrWlktr 97 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKTR 97 (114)
T ss_pred ecchHHHHHHHHHHHhhc
Confidence 799999999999999964
No 124
>KOG1940|consensus
Probab=59.52 E-value=7.3 Score=29.28 Aligned_cols=48 Identities=29% Similarity=0.602 Sum_probs=35.5
Q ss_pred CCCccccccccccCCC--CCcccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCccccc
Q psy7604 30 TSSKSKCEICFTNMPS--TLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNI 88 (118)
Q Consensus 30 ~~~~~~C~IC~~~~~~--~~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~ 88 (118)
......||||.+.+.. .....+.|||..-..|+..++. +| .+||. |..
T Consensus 155 ~~~~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~-----~~----y~CP~--C~~ 204 (276)
T KOG1940|consen 155 RSSEFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMIC-----EG----YTCPI--CSK 204 (276)
T ss_pred hcccCCCchhHHHhccccccCCccCcccchHHHHHHHHhc-----cC----CCCCc--ccc
Confidence 3445669999998743 2456689999988888887766 22 68995 888
No 125
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=59.50 E-value=7.4 Score=21.38 Aligned_cols=47 Identities=21% Similarity=0.527 Sum_probs=24.1
Q ss_pred cccccccccCCCCCcccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCccccc
Q psy7604 34 SKCEICFTNMPSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNI 88 (118)
Q Consensus 34 ~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~ 88 (118)
..|+|-+..+. .......|.|.-|.+ +..|+....+ .+ .-+||. |+.
T Consensus 3 L~CPls~~~i~-~P~Rg~~C~H~~CFD-l~~fl~~~~~-~~---~W~CPi--C~~ 49 (50)
T PF02891_consen 3 LRCPLSFQRIR-IPVRGKNCKHLQCFD-LESFLESNQR-TP---KWKCPI--CNK 49 (50)
T ss_dssp SB-TTTSSB-S-SEEEETT--SS--EE-HHHHHHHHHH-S------B-TT--T--
T ss_pred eeCCCCCCEEE-eCccCCcCcccceEC-HHHHHHHhhc-cC---CeECcC--CcC
Confidence 46888887752 244567999998865 7788888763 22 478994 764
No 126
>PLN02400 cellulose synthase
Probab=58.40 E-value=5.1 Score=35.46 Aligned_cols=50 Identities=26% Similarity=0.649 Sum_probs=33.8
Q ss_pred CccccccccccCCCC---C-ccc-CCCCccchHHHHHHHHHHHhhhcCCceeeecCCcccccccc
Q psy7604 32 SKSKCEICFTNMPST---L-MTG-LECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVD 91 (118)
Q Consensus 32 ~~~~C~IC~~~~~~~---~-~~~-l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~ 91 (118)
....|.||-|++... + ++. -.|+-..|+.|+ +| ..+ +|. -.||+ |+....
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCY-EY---ERk-eGn---q~CPQ--CkTrYk 89 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECAFPVCRPCY-EY---ERK-DGT---QCCPQ--CKTRYR 89 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCCCccccchh-he---ecc-cCC---ccCcc--cCCccc
Confidence 456899999997532 3 333 378889999998 44 333 564 36996 876543
No 127
>PF14471 DUF4428: Domain of unknown function (DUF4428)
Probab=57.28 E-value=11 Score=20.85 Aligned_cols=30 Identities=20% Similarity=0.418 Sum_probs=20.3
Q ss_pred ccccccccCCCCCcccCCCCccchHHHHHHH
Q psy7604 35 KCEICFTNMPSTLMTGLECSHRFCTQCWCEY 65 (118)
Q Consensus 35 ~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y 65 (118)
.|.||-.....-..+.+.=| ..|.+|++..
T Consensus 1 ~C~iCg~kigl~~~~k~~DG-~iC~~C~~Kl 30 (51)
T PF14471_consen 1 KCAICGKKIGLFKRFKIKDG-YICKDCLKKL 30 (51)
T ss_pred CCCccccccccccceeccCc-cchHHHHHHh
Confidence 48999988743222334445 7999999765
No 128
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=56.20 E-value=11 Score=20.60 Aligned_cols=33 Identities=15% Similarity=0.427 Sum_probs=24.0
Q ss_pred CCccccccccccCCCCCcccCCCCccchHHHHHH
Q psy7604 31 SSKSKCEICFTNMPSTLMTGLECSHRFCTQCWCE 64 (118)
Q Consensus 31 ~~~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~ 64 (118)
.+=+.|..|-..+.....+..+ |..+|..|+.+
T Consensus 24 ~~Cf~C~~C~~~l~~~~~~~~~-~~~~C~~c~~~ 56 (58)
T PF00412_consen 24 PECFKCSKCGKPLNDGDFYEKD-GKPYCKDCYQK 56 (58)
T ss_dssp TTTSBETTTTCBTTTSSEEEET-TEEEEHHHHHH
T ss_pred ccccccCCCCCccCCCeeEeEC-CEEECHHHHhh
Confidence 4578899999888655533333 68999999865
No 129
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=54.85 E-value=6.3 Score=21.99 Aligned_cols=12 Identities=33% Similarity=1.038 Sum_probs=7.4
Q ss_pred CCCCccchHHHH
Q psy7604 51 LECSHRFCTQCW 62 (118)
Q Consensus 51 l~CgH~fC~~C~ 62 (118)
..|++.||.+|=
T Consensus 25 ~~C~~~FC~dCD 36 (51)
T PF07975_consen 25 PKCKNHFCIDCD 36 (51)
T ss_dssp TTTT--B-HHHH
T ss_pred CCCCCccccCcC
Confidence 589999999984
No 130
>KOG0298|consensus
Probab=53.66 E-value=4.9 Score=36.15 Aligned_cols=39 Identities=26% Similarity=0.439 Sum_probs=30.4
Q ss_pred CCccccccccccCCCCCcccCCCCccchHHHHHHHHHHHh
Q psy7604 31 SSKSKCEICFTNMPSTLMTGLECSHRFCTQCWCEYLTTKI 70 (118)
Q Consensus 31 ~~~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y~~~~i 70 (118)
...+.|+||.+.+.. ......|||.+|..|...++..+.
T Consensus 1151 ~~~~~c~ic~dil~~-~~~I~~cgh~~c~~c~~~~l~~~s 1189 (1394)
T KOG0298|consen 1151 SGHFVCEICLDILRN-QGGIAGCGHEPCCRCDELWLYASS 1189 (1394)
T ss_pred hcccchHHHHHHHHh-cCCeeeechhHhhhHHHHHHHHhc
Confidence 456789999998732 234469999999999999988653
No 131
>PF10426 zf-RAG1: Recombination-activating protein 1 zinc-finger domain; InterPro: IPR019485 During lymphocyte development, the genes encoding immunoglobulins and T-cell receptors are assembled from variable (V), diversity (D), and joining (J) gene segments. This combinatorial process, known as V(D)J recombination, allows the generation of an enormous range of binding specificities from a limited amount of genetic information. The V(D)J recombination-activating proteins 1 and 2 (RAG1 and RAG2) form a complex that initiates this process by binding to the conserved recombination signal sequences (RSS) and introducing a double-strand break between the RSS and the adjacent coding segment. These breaks are generated in two steps, nicking of one strand (hydrolysis), followed by hairpin formation (transesterification). RAG1/2 has also been shown to function as a transposase in vitro, and to possess RSS-independent endonuclease activity (end processing) and hairpin opening. RAG1 alone can bind to RSS but stable, efficient binding requires RAG2. All known catalytic activities require the presence of both proteins. For more information see []. Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type zinc-finger domain found in the RAG1 protein. The structure contains the characteristic two-stranded beta-sheet and alpha-helix of a classical zinc-finger. The domain binds one zinc and, in complex with an adjacent RING-type zinc finger domain, helps to stabilise the whole of the dimerisation region of recombination activating protein 1 (RAG1) []. The function of the whole is to bind double-stranded DNA. ; GO: 0016788 hydrolase activity, acting on ester bonds, 0016881 acid-amino acid ligase activity; PDB: 1RMD_A.
Probab=53.07 E-value=8.3 Score=19.10 Aligned_cols=22 Identities=18% Similarity=0.424 Sum_probs=12.0
Q ss_pred eeecCCccccccccHHHHhccc
Q psy7604 78 TIACAAHGCNILVDDGTVMRLV 99 (118)
Q Consensus 78 ~i~CP~~~C~~~i~~~~i~~ll 99 (118)
.++||..+|...+....--..+
T Consensus 2 ~vrCPvkdC~EEv~lgKY~~H~ 23 (30)
T PF10426_consen 2 VVRCPVKDCDEEVSLGKYSHHL 23 (30)
T ss_dssp EEE--STT---EEEHHHHHHHH
T ss_pred ccccccccCcchhhhhhhcccc
Confidence 4899999999988876554443
No 132
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=52.82 E-value=6.2 Score=27.29 Aligned_cols=36 Identities=22% Similarity=0.568 Sum_probs=23.3
Q ss_pred ccccccccccCCCCCcccC-------CCCccch------HHHHHHHHHHHh
Q psy7604 33 KSKCEICFTNMPSTLMTGL-------ECSHRFC------TQCWCEYLTTKI 70 (118)
Q Consensus 33 ~~~C~IC~~~~~~~~~~~l-------~CgH~fC------~~C~~~y~~~~i 70 (118)
..+||||++- + .+.+.| +|.-..| .+|+.+|-+...
T Consensus 2 d~~CpICme~-P-HNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~ 50 (162)
T PF07800_consen 2 DVTCPICMEH-P-HNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYG 50 (162)
T ss_pred CccCceeccC-C-CceEEEEeccccCCccccccCCccchhHHHHHHHHHhc
Confidence 5789999986 2 444444 3443444 578888887654
No 133
>KOG2932|consensus
Probab=51.86 E-value=6.5 Score=30.23 Aligned_cols=31 Identities=23% Similarity=0.529 Sum_probs=20.7
Q ss_pred ccccccccccCCCCC-cccCCCCccchHHHHHHH
Q psy7604 33 KSKCEICFTNMPSTL-MTGLECSHRFCTQCWCEY 65 (118)
Q Consensus 33 ~~~C~IC~~~~~~~~-~~~l~CgH~fC~~C~~~y 65 (118)
.-.|.-|--.+ .- .....|.|.||.+|.+..
T Consensus 90 VHfCd~Cd~PI--~IYGRmIPCkHvFCl~CAr~~ 121 (389)
T KOG2932|consen 90 VHFCDRCDFPI--AIYGRMIPCKHVFCLECARSD 121 (389)
T ss_pred eEeecccCCcc--eeeecccccchhhhhhhhhcC
Confidence 34577775443 22 234699999999998754
No 134
>PF02148 zf-UBP: Zn-finger in ubiquitin-hydrolases and other protein; InterPro: IPR001607 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents UBP-type zinc finger domains, which display some similarity with the Zn-binding domain of the insulinase family. The UBP-type zinc finger domain is found only in a small subfamily of ubiquitin C-terminal hydrolases (deubiquitinases or UBP) [, ], All members of this subfamily are isopeptidase-T, which are known to cleave isopeptide bonds between ubiquitin moieties. Some of the proteins containing an UBP zinc finger include: Homo sapiens (Human) deubiquitinating enzyme 13 (UBPD) Human deubiquitinating enzyme 5 (UBP5) Dictyostelium discoideum (Slime mold) deubiquitinating enzyme A (UBPA) Saccharomyces cerevisiae (Baker's yeast) deubiquitinating enzyme 8 (UBP8) Yeast deubiquitinating enzyme 14 (UBP14) More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3GV4_A 3PHD_B 3C5K_A 2UZG_A 3IHP_B 2G43_B 2G45_D 2I50_A 3MHH_A 3MHS_A ....
Probab=51.16 E-value=11 Score=21.46 Aligned_cols=32 Identities=22% Similarity=0.371 Sum_probs=20.5
Q ss_pred cccccccCCCCCcccCCCCccchHH----HHHHHHHH
Q psy7604 36 CEICFTNMPSTLMTGLECSHRFCTQ----CWCEYLTT 68 (118)
Q Consensus 36 C~IC~~~~~~~~~~~l~CgH~fC~~----C~~~y~~~ 68 (118)
|..|... .....+=|.||+.+|.. ....|.+.
T Consensus 1 C~~C~~~-~~~lw~CL~Cg~~~C~~~~~~Ha~~H~~~ 36 (63)
T PF02148_consen 1 CSVCGST-NSNLWLCLTCGYVGCGRYSNGHALKHYKE 36 (63)
T ss_dssp -SSSHTC-SSSEEEETTTS-EEETTTSTSHHHHHHHH
T ss_pred CCCCCCc-CCceEEeCCCCcccccCCcCcHHHHhhcc
Confidence 5666644 22334558999999996 77777774
No 135
>KOG0825|consensus
Probab=49.84 E-value=21 Score=31.03 Aligned_cols=51 Identities=16% Similarity=0.387 Sum_probs=33.9
Q ss_pred ccccccccccCCCCCc-ccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCccccccccHHH
Q psy7604 33 KSKCEICFTNMPSTLM-TGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGT 94 (118)
Q Consensus 33 ~~~C~IC~~~~~~~~~-~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~~~~ 94 (118)
...|++|+..+..... ....|+|.||..|+..|-... =.||. |...+..-.
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~a---------qTCPi--DR~EF~~v~ 174 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCA---------QTCPV--DRGEFGEVK 174 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhc---------ccCch--hhhhhheee
Confidence 3467788777533222 335899999999999987632 25884 776655433
No 136
>KOG1571|consensus
Probab=48.64 E-value=14 Score=28.70 Aligned_cols=45 Identities=18% Similarity=0.477 Sum_probs=29.3
Q ss_pred CCccccccccccCCCCCcccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCcccccccc
Q psy7604 31 SSKSKCEICFTNMPSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVD 91 (118)
Q Consensus 31 ~~~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~ 91 (118)
+..-.|.||.++. .+...++|||.-| |.--+ . ..+.||- |...|.
T Consensus 303 ~~p~lcVVcl~e~--~~~~fvpcGh~cc--ct~cs--~--------~l~~CPv--CR~rI~ 347 (355)
T KOG1571|consen 303 PQPDLCVVCLDEP--KSAVFVPCGHVCC--CTLCS--K--------HLPQCPV--CRQRIR 347 (355)
T ss_pred CCCCceEEecCCc--cceeeecCCcEEE--chHHH--h--------hCCCCch--hHHHHH
Confidence 4456799999985 4477789999765 43211 1 1345994 876554
No 137
>TIGR02159 PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=47.77 E-value=13 Score=25.20 Aligned_cols=57 Identities=14% Similarity=0.259 Sum_probs=34.8
Q ss_pred ChhHHHHHcCcCCCCCC-CCCC-CCCCccccccccccCCC--CCcccCCCC-ccchHHHHHH
Q psy7604 8 DQEQLFAEARVINPLVK-NSQP-STSSKSKCEICFTNMPS--TLMTGLECS-HRFCTQCWCE 64 (118)
Q Consensus 8 ~~~~~~~~~gl~~~~~~-~~~~-~~~~~~~C~IC~~~~~~--~~~~~l~Cg-H~fC~~C~~~ 64 (118)
..-+-|.+.||.+|... .+.. .......||-|-..... +.+-+..|. ...|++|..-
T Consensus 78 ~gr~~l~~~giapp~~~~~~~~~~~~~~~~cp~c~s~~t~~~s~fg~t~cka~~~c~~c~ep 139 (146)
T TIGR02159 78 DAREKLREYGIAPPAGHYVVGVSPEPPSVQCPRCGSADTTITSIFGPTACKALYRCRACKEP 139 (146)
T ss_pred HHHHHHHhcCccCCCccCCCcccCCCCCCcCCCCCCCCcEeecCCCChhhHHHhhhhhhCCc
Confidence 34456778898776543 1111 01225799999877532 345566886 4789999754
No 138
>PF15616 TerY-C: TerY-C metal binding domain
Probab=46.56 E-value=10 Score=25.34 Aligned_cols=43 Identities=21% Similarity=0.485 Sum_probs=30.6
Q ss_pred ccccccccccCCCCCcccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCccccccccHHH
Q psy7604 33 KSKCEICFTNMPSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGT 94 (118)
Q Consensus 33 ~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~~~~ 94 (118)
...||-|-..+ .+..-.||+.+|. +|. ..+.|| -|........
T Consensus 77 ~PgCP~CGn~~---~fa~C~CGkl~Ci-------------~g~-~~~~CP--wCg~~g~~~~ 119 (131)
T PF15616_consen 77 APGCPHCGNQY---AFAVCGCGKLFCI-------------DGE-GEVTCP--WCGNEGSFGA 119 (131)
T ss_pred CCCCCCCcChh---cEEEecCCCEEEe-------------CCC-CCEECC--CCCCeeeecc
Confidence 36799998774 3455599999996 343 368999 5887765443
No 139
>PF06467 zf-FCS: MYM-type Zinc finger with FCS sequence motif; InterPro: IPR010507 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. MYM-type zinc fingers were identified in MYM family proteins []. Human protein Q14202 from SWISSPROT is involved in a chromosomal translocation and may be responsible for X-linked retardation in XQ13.1 []. Q9UBW7 from SWISSPROT is also involved in disease. In myeloproliferative disorders it is fused to FGF receptor 1 []; in atypical myeloproliferative disorders it is rearranged []. Members of the family generally are involved in development. This Zn-finger domain functions as a transcriptional trans-activator of late vaccinia viral genes, and orthologues are also found in all nucleocytoplasmic large DNA viruses, NCLDV. This domain is also found fused to the C termini of recombinases from certain prokaryotic transposons []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2L8E_A 2DAS_A.
Probab=46.55 E-value=14 Score=18.99 Aligned_cols=36 Identities=19% Similarity=0.479 Sum_probs=19.3
Q ss_pred CCCccccccccccCCCCCc---c-cCCCCccchH-HHHHHH
Q psy7604 30 TSSKSKCEICFTNMPSTLM---T-GLECSHRFCT-QCWCEY 65 (118)
Q Consensus 30 ~~~~~~C~IC~~~~~~~~~---~-~l~CgH~fC~-~C~~~y 65 (118)
......|.-|-..+...+. + .-+-.|.||. .|+..|
T Consensus 3 ~~~~~~C~~C~~~~~~~~~~~~~~~~g~~~~FCS~~C~~~y 43 (43)
T PF06467_consen 3 NLKMKTCSYCKKYIPNKPTMIEVQYDGKMKQFCSQSCLSSY 43 (43)
T ss_dssp G-SCEE-TTT--EEECCC----EE-TTTTSCCSSHHHHHHH
T ss_pred CCcCCcCcccCCcccCCCccccccccCcccChhCHHHHhhC
Confidence 3456789999988754331 2 2367778885 566554
No 140
>KOG2807|consensus
Probab=46.11 E-value=12 Score=28.93 Aligned_cols=45 Identities=22% Similarity=0.578 Sum_probs=29.6
Q ss_pred CccccccccccCCCCCcc-cCCCCccchHHHHHHHHHHHhhhcCCceeeecCCcccc
Q psy7604 32 SKSKCEICFTNMPSTLMT-GLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCN 87 (118)
Q Consensus 32 ~~~~C~IC~~~~~~~~~~-~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~ 87 (118)
....|-.|.++......+ -..|.|.||.+|-. |+...+ -.|| +|.
T Consensus 329 ~~~~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv-~iHesL--------h~Cp--gCe 374 (378)
T KOG2807|consen 329 GSRFCFACQGELLSSGRYRCESCKNVFCLDCDV-FIHESL--------HNCP--GCE 374 (378)
T ss_pred CCcceeeeccccCCCCcEEchhccceeeccchH-HHHhhh--------hcCC--CcC
Confidence 344599997776544444 46999999999943 444333 2588 575
No 141
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=43.63 E-value=15 Score=16.79 Aligned_cols=9 Identities=22% Similarity=0.667 Sum_probs=4.5
Q ss_pred cccccccCC
Q psy7604 36 CEICFTNMP 44 (118)
Q Consensus 36 C~IC~~~~~ 44 (118)
|+-|-.+++
T Consensus 2 Cp~CG~~~~ 10 (23)
T PF13240_consen 2 CPNCGAEIE 10 (23)
T ss_pred CcccCCCCC
Confidence 555555543
No 142
>PF13124 DUF3963: Protein of unknown function (DUF3963)
Probab=42.99 E-value=4.6 Score=20.89 Aligned_cols=14 Identities=36% Similarity=0.833 Sum_probs=9.5
Q ss_pred CCcccCCChhHHHHH
Q psy7604 1 MERYYDGDQEQLFAE 15 (118)
Q Consensus 1 ~e~y~~~~~~~~~~~ 15 (118)
||+||+ |-+|-.++
T Consensus 9 ieryfd-diqkwirn 22 (40)
T PF13124_consen 9 IERYFD-DIQKWIRN 22 (40)
T ss_pred HHHHHH-HHHHHHHH
Confidence 578888 77665543
No 143
>PHA02862 5L protein; Provisional
Probab=40.40 E-value=38 Score=23.22 Aligned_cols=48 Identities=15% Similarity=0.292 Sum_probs=31.1
Q ss_pred cccccccccCCCCCcccCCC---CccchHHHHHHHHHHHhhhcCCceeeecCCcccccccc
Q psy7604 34 SKCEICFTNMPSTLMTGLEC---SHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVD 91 (118)
Q Consensus 34 ~~C~IC~~~~~~~~~~~l~C---gH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~ 91 (118)
..|-||+++-. .+...-.| -....++|+.+|+.. . .+..||. |+....
T Consensus 3 diCWIC~~~~~-e~~~PC~C~GS~K~VHq~CL~~WIn~----S---~k~~CeL--CkteY~ 53 (156)
T PHA02862 3 DICWICNDVCD-ERNNFCGCNEEYKVVHIKCMQLWINY----S---KKKECNL--CKTKYN 53 (156)
T ss_pred CEEEEecCcCC-CCcccccccCcchhHHHHHHHHHHhc----C---CCcCccC--CCCeEE
Confidence 46999999852 22211244 235789999999953 1 3578996 876653
No 144
>KOG1100|consensus
Probab=38.14 E-value=11 Score=27.00 Aligned_cols=24 Identities=29% Similarity=0.696 Sum_probs=18.2
Q ss_pred cccccccCCCCCcccCCCCc-cchHHH
Q psy7604 36 CEICFTNMPSTLMTGLECSH-RFCTQC 61 (118)
Q Consensus 36 C~IC~~~~~~~~~~~l~CgH-~fC~~C 61 (118)
|-.|.+.- .-+..++|.| .+|..|
T Consensus 161 Cr~C~~~~--~~VlllPCrHl~lC~~C 185 (207)
T KOG1100|consen 161 CRKCGERE--ATVLLLPCRHLCLCGIC 185 (207)
T ss_pred ceecCcCC--ceEEeecccceEecccc
Confidence 99998772 2356689999 588876
No 145
>KOG2857|consensus
Probab=37.51 E-value=16 Score=24.84 Aligned_cols=33 Identities=21% Similarity=0.578 Sum_probs=24.4
Q ss_pred ccccccccccCCCCCcccCCCCccchH-HHHHHHHH
Q psy7604 33 KSKCEICFTNMPSTLMTGLECSHRFCT-QCWCEYLT 67 (118)
Q Consensus 33 ~~~C~IC~~~~~~~~~~~l~CgH~fC~-~C~~~y~~ 67 (118)
..+|.||.+.. ....-..|.-.||. .||+.|-.
T Consensus 5 t~tC~ic~e~~--~KYKCpkC~vPYCSl~CfKiHk~ 38 (157)
T KOG2857|consen 5 TTTCVICLESE--IKYKCPKCSVPYCSLPCFKIHKS 38 (157)
T ss_pred eeeehhhhcch--hhccCCCCCCccccchhhhhccC
Confidence 57899999863 23445688888886 78887765
No 146
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=37.11 E-value=29 Score=19.75 Aligned_cols=45 Identities=27% Similarity=0.605 Sum_probs=30.2
Q ss_pred cccccccccCCCCCcccCCCCc--cchHHHHHHHHHHHhhhcCCceeeecCCcccccccc
Q psy7604 34 SKCEICFTNMPSTLMTGLECSH--RFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVD 91 (118)
Q Consensus 34 ~~C~IC~~~~~~~~~~~l~CgH--~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~ 91 (118)
..|..|-.+++.+.....-|.+ .||.+|....+. -.||+ |...+.
T Consensus 6 pnCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l~-----------~~CPN--CgGelv 52 (57)
T PF06906_consen 6 PNCECCDKDLPPDSPEAYICSFECTFCADCAETMLN-----------GVCPN--CGGELV 52 (57)
T ss_pred CCccccCCCCCCCCCcceEEeEeCcccHHHHHHHhc-----------CcCcC--CCCccc
Confidence 3588888888655445566665 699999765542 24884 876554
No 147
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=36.81 E-value=40 Score=18.48 Aligned_cols=16 Identities=19% Similarity=0.250 Sum_probs=11.8
Q ss_pred eeecCCccccccccHH
Q psy7604 78 TIACAAHGCNILVDDG 93 (118)
Q Consensus 78 ~i~CP~~~C~~~i~~~ 93 (118)
...||.++|...+...
T Consensus 18 ~~~CP~~~C~~~~~~~ 33 (64)
T smart00647 18 LKWCPAPDCSAAIIVT 33 (64)
T ss_pred ccCCCCCCCcceEEec
Confidence 4679988898777553
No 148
>KOG0006|consensus
Probab=35.25 E-value=19 Score=27.91 Aligned_cols=16 Identities=31% Similarity=0.858 Sum_probs=14.0
Q ss_pred CCCccchHHHHHHHHH
Q psy7604 52 ECSHRFCTQCWCEYLT 67 (118)
Q Consensus 52 ~CgH~fC~~C~~~y~~ 67 (118)
+||-.||+.|...|-.
T Consensus 341 gCgf~FCR~C~e~yh~ 356 (446)
T KOG0006|consen 341 GCGFAFCRECKEAYHE 356 (446)
T ss_pred CchhHhHHHHHhhhcc
Confidence 5999999999998754
No 149
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=35.02 E-value=7.8 Score=21.51 Aligned_cols=12 Identities=33% Similarity=0.957 Sum_probs=9.8
Q ss_pred CCCccchHHHHH
Q psy7604 52 ECSHRFCTQCWC 63 (118)
Q Consensus 52 ~CgH~fC~~C~~ 63 (118)
.|++.||..|-.
T Consensus 45 ~C~~~fC~~C~~ 56 (64)
T PF01485_consen 45 SCGTEFCFKCGE 56 (64)
T ss_dssp SCCSEECSSSTS
T ss_pred CCCCcCccccCc
Confidence 599999988754
No 150
>KOG0129|consensus
Probab=33.86 E-value=21 Score=29.15 Aligned_cols=35 Identities=17% Similarity=0.579 Sum_probs=24.2
Q ss_pred CCCccccccccccC---CCCCc--ccCCCCccchHHHHHH
Q psy7604 30 TSSKSKCEICFTNM---PSTLM--TGLECSHRFCTQCWCE 64 (118)
Q Consensus 30 ~~~~~~C~IC~~~~---~~~~~--~~l~CgH~fC~~C~~~ 64 (118)
.-+...|.+|-... ....+ ....|--+||..||..
T Consensus 452 v~eDq~CdeC~g~~c~~q~aPfFC~n~~C~QYYCe~CWa~ 491 (520)
T KOG0129|consen 452 VMEDQLCDECGGRRCGGQFAPFFCRNATCFQYYCESCWAK 491 (520)
T ss_pred eccccchhhhcCeeccCccCCcccCCccHHhhhchHHHHH
Confidence 34677899998732 11232 3468999999999975
No 151
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=33.82 E-value=23 Score=16.63 Aligned_cols=19 Identities=16% Similarity=0.347 Sum_probs=14.6
Q ss_pred eecCCccccccccHHHHhccc
Q psy7604 79 IACAAHGCNILVDDGTVMRLV 99 (118)
Q Consensus 79 i~CP~~~C~~~i~~~~i~~ll 99 (118)
+.|| -|...++...|...|
T Consensus 2 v~CP--iC~~~v~~~~in~HL 20 (26)
T smart00734 2 VQCP--VCFREVPENLINSHL 20 (26)
T ss_pred CcCC--CCcCcccHHHHHHHH
Confidence 5799 599988887777665
No 152
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=33.67 E-value=17 Score=24.47 Aligned_cols=20 Identities=30% Similarity=0.597 Sum_probs=13.5
Q ss_pred cccccCCCCCcccCCCCccchH
Q psy7604 38 ICFTNMPSTLMTGLECSHRFCT 59 (118)
Q Consensus 38 IC~~~~~~~~~~~l~CgH~fC~ 59 (118)
||-+.- ..+..-.|||.||.
T Consensus 62 i~qs~~--~rv~rcecghsf~d 81 (165)
T COG4647 62 ICQSAQ--KRVIRCECGHSFGD 81 (165)
T ss_pred EEeccc--ccEEEEeccccccC
Confidence 444442 34666799999996
No 153
>cd07922 CarBa CarBa is the A subunit of 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. CarBa is the A subunit of 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. 2-aminophenol 1,6-dioxygenase is a key enzyme in the carbazole degradation pathway isolated from bacterial strains with carbazole degradation ability. The enzyme is a heterotetramer composed of two A and two B subunits. CarB belongs to the class III extradiol dioxygenase family, composed of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Although the enzyme was originally isolated as a meta-cleavage enzyme for 2'-aminobiphenyl-2,3-diol involved in carbazole degradation, the enzyme has also shown high specificity for 2,3-dihydroxybiphenyl.
Probab=32.30 E-value=14 Score=22.54 Aligned_cols=19 Identities=32% Similarity=0.539 Sum_probs=14.8
Q ss_pred CcccCCChhHHHHHcCcCCC
Q psy7604 2 ERYYDGDQEQLFAEARVINP 21 (118)
Q Consensus 2 e~y~~~~~~~~~~~~gl~~~ 21 (118)
++|-+ ||+.|++++||+..
T Consensus 21 erF~~-DPea~~~~~gLt~e 39 (81)
T cd07922 21 ERFQD-DPSAVFEEYGLTPA 39 (81)
T ss_pred HHHHH-CHHHHHHHcCCCHH
Confidence 34555 99999999999753
No 154
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=32.12 E-value=58 Score=18.66 Aligned_cols=29 Identities=28% Similarity=0.770 Sum_probs=21.0
Q ss_pred cccccccccCCCCCcccCCCCccch-HHHHHHHHHHHh
Q psy7604 34 SKCEICFTNMPSTLMTGLECSHRFC-TQCWCEYLTTKI 70 (118)
Q Consensus 34 ~~C~IC~~~~~~~~~~~l~CgH~fC-~~C~~~y~~~~i 70 (118)
..|++|...++. .-.|| ..|-..|.+.+=
T Consensus 4 kHC~~CG~~Ip~--------~~~fCS~~C~~~~~k~qk 33 (59)
T PF09889_consen 4 KHCPVCGKPIPP--------DESFCSPKCREEYRKRQK 33 (59)
T ss_pred CcCCcCCCcCCc--------chhhhCHHHHHHHHHHHH
Confidence 469999877643 35688 589888887653
No 155
>KOG3113|consensus
Probab=31.90 E-value=47 Score=24.90 Aligned_cols=69 Identities=13% Similarity=0.197 Sum_probs=45.4
Q ss_pred CCccccccccccCCCC-Cccc-CCCCccchHHHHHHHHHHHhhhcCCceeeecCCccccccccHHHHhcccCChHHHHHH
Q psy7604 31 SSKSKCEICFTNMPST-LMTG-LECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGTVMRLVRDPKVKLKY 108 (118)
Q Consensus 31 ~~~~~C~IC~~~~~~~-~~~~-l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~~~~i~~ll~~~~~~~ky 108 (118)
...+.|||=--++... .+.. -.|||.|--.=++ +|+ .-.|+. |...+..+++.-|=+.+|..+-|
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlK-----eik------as~C~~--C~a~y~~~dvIvlNg~~E~~dll 175 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALK-----EIK------ASVCHV--CGAAYQEDDVIVLNGTEEDVDLL 175 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHH-----Hhh------hccccc--cCCcccccCeEeeCCCHHHHHHH
Confidence 4578999987776543 2333 4999998753221 232 346984 99999999887776666666655
Q ss_pred HHHH
Q psy7604 109 QHLI 112 (118)
Q Consensus 109 ~~~~ 112 (118)
...+
T Consensus 176 k~rm 179 (293)
T KOG3113|consen 176 KTRM 179 (293)
T ss_pred HHHH
Confidence 5443
No 156
>COG5112 UFD2 U1-like Zn-finger-containing protein [General function prediction only]
Probab=31.17 E-value=42 Score=21.77 Aligned_cols=23 Identities=17% Similarity=0.350 Sum_probs=18.2
Q ss_pred cccCCCCccchHHHHHHHHHHHh
Q psy7604 48 MTGLECSHRFCTQCWCEYLTTKI 70 (118)
Q Consensus 48 ~~~l~CgH~fC~~C~~~y~~~~i 70 (118)
....+=||.||..|-+-++..+.
T Consensus 48 p~lPGlGqhYCieCaryf~t~~a 70 (126)
T COG5112 48 PELPGLGQHYCIECARYFITEKA 70 (126)
T ss_pred CCCCCCceeeeehhHHHHHHHHH
Confidence 34457799999999998887764
No 157
>cd02249 ZZ Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.
Probab=31.07 E-value=40 Score=17.81 Aligned_cols=31 Identities=19% Similarity=0.659 Sum_probs=19.8
Q ss_pred ccccccccCCCCCcccCCCCc-cchHHHHHHH
Q psy7604 35 KCEICFTNMPSTLMTGLECSH-RFCTQCWCEY 65 (118)
Q Consensus 35 ~C~IC~~~~~~~~~~~l~CgH-~fC~~C~~~y 65 (118)
.|.+|..++......-+.|.. ..|.+|+..-
T Consensus 2 ~C~~C~~~i~g~r~~C~~C~d~dLC~~Cf~~~ 33 (46)
T cd02249 2 SCDGCLKPIVGVRYHCLVCEDFDLCSSCYAKG 33 (46)
T ss_pred CCcCCCCCCcCCEEECCCCCCCcCHHHHHCcC
Confidence 588888765432233467764 6888888744
No 158
>PF14319 Zn_Tnp_IS91: Transposase zinc-binding domain
Probab=30.57 E-value=16 Score=23.55 Aligned_cols=53 Identities=13% Similarity=0.342 Sum_probs=32.5
Q ss_pred CCccccccccccCCCCCcccCCCCccchHHHHH----HHHHHHhhhcCCceeeecCCccccccccH
Q psy7604 31 SSKSKCEICFTNMPSTLMTGLECSHRFCTQCWC----EYLTTKIIQEGMGQTIACAAHGCNILVDD 92 (118)
Q Consensus 31 ~~~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~----~y~~~~i~~~g~~~~i~CP~~~C~~~i~~ 92 (118)
.....|+=|-.. ..+..+|+|++|..|=. +|+..+.. .-+.||..-=-..||.
T Consensus 40 ~~~~~C~~Cg~~----~~~~~SCk~R~CP~C~~~~~~~W~~~~~~-----~ll~~~y~HvVFTlP~ 96 (111)
T PF14319_consen 40 FHRYRCEDCGHE----KIVYNSCKNRHCPSCQAKATEQWIEKQRE-----DLLPVPYFHVVFTLPH 96 (111)
T ss_pred cceeecCCCCce----EEecCcccCcCCCCCCChHHHHHHHHHHh-----hCCCCCeEEEEEcCcH
Confidence 346678888654 35668999999999954 44444431 2356775433333443
No 159
>KOG3799|consensus
Probab=30.32 E-value=30 Score=23.41 Aligned_cols=20 Identities=25% Similarity=0.655 Sum_probs=14.6
Q ss_pred CCccccccccccCCCCCcccCCCCc
Q psy7604 31 SSKSKCEICFTNMPSTLMTGLECSH 55 (118)
Q Consensus 31 ~~~~~C~IC~~~~~~~~~~~l~CgH 55 (118)
....+|.||.... +.=+|||
T Consensus 63 ~ddatC~IC~KTK-----FADG~GH 82 (169)
T KOG3799|consen 63 GDDATCGICHKTK-----FADGCGH 82 (169)
T ss_pred CcCcchhhhhhcc-----cccccCc
Confidence 4567899998662 4557888
No 160
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=29.84 E-value=35 Score=15.83 Aligned_cols=9 Identities=22% Similarity=0.563 Sum_probs=4.7
Q ss_pred ccccccccC
Q psy7604 35 KCEICFTNM 43 (118)
Q Consensus 35 ~C~IC~~~~ 43 (118)
.|+-|-...
T Consensus 4 ~Cp~Cg~~~ 12 (26)
T PF13248_consen 4 FCPNCGAEI 12 (26)
T ss_pred CCcccCCcC
Confidence 455555543
No 161
>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....
Probab=29.24 E-value=38 Score=17.19 Aligned_cols=30 Identities=17% Similarity=0.427 Sum_probs=19.6
Q ss_pred ccccccccccCCCCCcccCCCCccchHHHHHH
Q psy7604 33 KSKCEICFTNMPSTLMTGLECSHRFCTQCWCE 64 (118)
Q Consensus 33 ~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~ 64 (118)
...|..+-+.. ...+=..|+-.+|..|...
T Consensus 3 ~~~C~~H~~~~--~~~~C~~C~~~~C~~C~~~ 32 (42)
T PF00643_consen 3 EPKCPEHPEEP--LSLFCEDCNEPLCSECTVS 32 (42)
T ss_dssp SSB-SSTTTSB--EEEEETTTTEEEEHHHHHT
T ss_pred CccCccCCccc--eEEEecCCCCccCccCCCC
Confidence 45577776542 2345578999999999864
No 162
>PF10170 C6_DPF: Cysteine-rich domain; InterPro: IPR018785 This entry represents the N-terminal approximately 100 amino acids of a family of proteins found in a range of organisms, including human, chicken and Drosophila [, , ]. It contains between six and eight highly conserved cysteine residues and a characteristic DPF sequence motif. One member is putatively named as receptor for egg jelly protein but this could not confirmed.
Probab=27.69 E-value=57 Score=20.69 Aligned_cols=36 Identities=25% Similarity=0.422 Sum_probs=22.7
Q ss_pred ccccccccccCCCCCcccCCCCccchHHHHHHHHHH
Q psy7604 33 KSKCEICFTNMPSTLMTGLECSHRFCTQCWCEYLTT 68 (118)
Q Consensus 33 ~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y~~~ 68 (118)
+..|.+|-..+=.+.--++-=.-+||..|.++.+..
T Consensus 49 Ga~CS~C~~~VC~~~~CSlFYtkrFC~pC~~~~~~~ 84 (97)
T PF10170_consen 49 GAPCSICGKPVCVGQDCSLFYTKRFCLPCVKRNLKA 84 (97)
T ss_pred CccccccCCceEcCCCccEEeeCceeHHHHHHHHHH
Confidence 457999976642222222222568999999988764
No 163
>PF08882 Acetone_carb_G: Acetone carboxylase gamma subunit; InterPro: IPR014979 Acetone carboxylase is the key enzyme of bacterial acetone metabolism, catalysing the condensation of acetone and CO2 to form acetoacetate [] according to the following reaction: CH3COCH3 + CO2 + ATP = CH3COCH2COO- + AMP + 2P(i) + H+ It has the subunit composition: (alpha(2)beta(2)gamma(2) multimers of 85kDa, 78kDa, and 20kDa subunits). It is expressed to high levels (17 to 25% of soluble protein) in cells grown with acetone as the carbon source but are not present at detectable levels in cells grown with other carbon sources []. Acetone carboxylase may enable Helicobacter pylori to survive off acetone in the stomach of humans and other mammals where it is the etiological agent of peptic ulcer disease []. This entry represents the family of gamma subunit-related acetone carboxylase proteins.
Probab=27.50 E-value=25 Score=22.86 Aligned_cols=12 Identities=33% Similarity=1.068 Sum_probs=9.6
Q ss_pred cccCCCCccchH
Q psy7604 48 MTGLECSHRFCT 59 (118)
Q Consensus 48 ~~~l~CgH~fC~ 59 (118)
.+.-.|||.||.
T Consensus 24 ~vkc~CGh~f~d 35 (112)
T PF08882_consen 24 VVKCDCGHEFCD 35 (112)
T ss_pred eeeccCCCeecC
Confidence 455689999996
No 164
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=27.25 E-value=62 Score=20.78 Aligned_cols=15 Identities=20% Similarity=0.494 Sum_probs=10.1
Q ss_pred eeeecCCccccccccHH
Q psy7604 77 QTIACAAHGCNILVDDG 93 (118)
Q Consensus 77 ~~i~CP~~~C~~~i~~~ 93 (118)
.+|.|| .|...++.+
T Consensus 25 ~PivCP--~CG~~~~~~ 39 (108)
T PF09538_consen 25 DPIVCP--KCGTEFPPE 39 (108)
T ss_pred CCccCC--CCCCccCcc
Confidence 367777 577777666
No 165
>cd07321 Extradiol_Dioxygenase_3A_like Subunit A of Class III extradiol dioxygenases. Extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. There are two major groups of dioxygenases according to the cleavage site of the aromatic ring. Intradiol enzymes cleave the aromatic ring between two hydroxyl groups, whereas extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Extradiol dioxygenases can be divided into three classes. Class I and II enzymes are evolutionary related and show sequence similarity, with the two domain class II enzymes evolving from the class I enzyme through gene duplication. Class III enzymes are different in sequence and structure and usually have two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents subunit A of c
Probab=26.75 E-value=27 Score=20.93 Aligned_cols=19 Identities=32% Similarity=0.445 Sum_probs=15.2
Q ss_pred CcccCCChhHHHHHcCcCCC
Q psy7604 2 ERYYDGDQEQLFAEARVINP 21 (118)
Q Consensus 2 e~y~~~~~~~~~~~~gl~~~ 21 (118)
|+|-+ |++.++++.||+..
T Consensus 20 e~f~~-dp~a~~~~~~Lt~e 38 (77)
T cd07321 20 ERFKA-DPEAVLAEYGLTPE 38 (77)
T ss_pred HHHHh-CHHHHHHHcCCCHH
Confidence 45566 99999999999753
No 166
>smart00290 ZnF_UBP Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger.
Probab=26.70 E-value=38 Score=17.91 Aligned_cols=24 Identities=29% Similarity=0.559 Sum_probs=15.5
Q ss_pred cccccccCCCCCcccCCCCccchHHH
Q psy7604 36 CEICFTNMPSTLMTGLECSHRFCTQC 61 (118)
Q Consensus 36 C~IC~~~~~~~~~~~l~CgH~fC~~C 61 (118)
|..|.... +..+-|.|+|.+|..-
T Consensus 2 C~~C~~~~--~l~~CL~C~~~~c~~~ 25 (50)
T smart00290 2 CSVCGTIE--NLWLCLTCGQVGCGRY 25 (50)
T ss_pred cccCCCcC--CeEEecCCCCcccCCC
Confidence 66776442 2345688999999543
No 167
>PF01530 zf-C2HC: Zinc finger, C2HC type; InterPro: IPR002515 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the CysCysHisCys (C2HC) type zinc finger domain found in eukaryotes. Proteins containing these domains include: MYST family histone acetyltransferases [, [] Myelin transcription factor Myt1 [] Suppressor of tumourigenicity protein 18 (ST18) [] More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2CS8_A 1PXE_A 2JX1_A 2JYD_A.
Probab=26.62 E-value=29 Score=17.33 Aligned_cols=11 Identities=27% Similarity=0.830 Sum_probs=7.1
Q ss_pred eecCCcccccc
Q psy7604 79 IACAAHGCNIL 89 (118)
Q Consensus 79 i~CP~~~C~~~ 89 (118)
.+||-++|...
T Consensus 2 ~~CPtpGCdg~ 12 (31)
T PF01530_consen 2 LKCPTPGCDGS 12 (31)
T ss_dssp TSSSSTT--SC
T ss_pred CcCCCCCCCcc
Confidence 47999999864
No 168
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=26.54 E-value=53 Score=17.96 Aligned_cols=19 Identities=21% Similarity=0.590 Sum_probs=11.7
Q ss_pred ecCCccccccccHHHHhcccC
Q psy7604 80 ACAAHGCNILVDDGTVMRLVR 100 (118)
Q Consensus 80 ~CP~~~C~~~i~~~~i~~ll~ 100 (118)
.||- |...++++.-..|+.
T Consensus 22 ~CPl--C~r~l~~e~~~~li~ 40 (54)
T PF04423_consen 22 CCPL--CGRPLDEEHRQELIK 40 (54)
T ss_dssp E-TT--T--EE-HHHHHHHHH
T ss_pred cCCC--CCCCCCHHHHHHHHH
Confidence 8995 999999988766663
No 169
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=26.29 E-value=14 Score=20.39 Aligned_cols=27 Identities=26% Similarity=0.459 Sum_probs=15.4
Q ss_pred chHHHHHHHHHHHhhhcCCceeeecCCccccccc
Q psy7604 57 FCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILV 90 (118)
Q Consensus 57 fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i 90 (118)
-|..|++.+ ..++ .+ ..++||. |+..|
T Consensus 8 ~C~~Cg~~~--~~~~-~~--~~irCp~--Cg~rI 34 (49)
T COG1996 8 KCARCGREV--ELDQ-ET--RGIRCPY--CGSRI 34 (49)
T ss_pred EhhhcCCee--ehhh-cc--CceeCCC--CCcEE
Confidence 466676666 2221 22 4689995 76543
No 170
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=25.91 E-value=27 Score=19.25 Aligned_cols=31 Identities=23% Similarity=0.671 Sum_probs=18.0
Q ss_pred CCC-CccchHHHHHHHHHHHhhhcCCceeeecCCccccccccH
Q psy7604 51 LEC-SHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDD 92 (118)
Q Consensus 51 l~C-gH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~~ 92 (118)
..| .|..|..|++..+.. .-.||. |...++-
T Consensus 16 i~C~dHYLCl~CLt~ml~~---------s~~C~i--C~~~LPt 47 (50)
T PF03854_consen 16 IKCSDHYLCLNCLTLMLSR---------SDRCPI--CGKPLPT 47 (50)
T ss_dssp EE-SS-EEEHHHHHHT-SS---------SSEETT--TTEE---
T ss_pred eeecchhHHHHHHHHHhcc---------ccCCCc--ccCcCcc
Confidence 356 699999999766541 236985 8887764
No 171
>KOG2231|consensus
Probab=25.60 E-value=58 Score=27.66 Aligned_cols=47 Identities=19% Similarity=0.461 Sum_probs=31.2
Q ss_pred ccccccccCCCCCcccCCCCc-cchHHHHHHHHHHHhhhcCCceeeecCCccccc
Q psy7604 35 KCEICFTNMPSTLMTGLECSH-RFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNI 88 (118)
Q Consensus 35 ~C~IC~~~~~~~~~~~l~CgH-~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~ 88 (118)
.|.||.... +-...-.||| ..|.+|......... ++. -...||. |..
T Consensus 2 ~c~ic~~s~--~~~~~~s~~h~~v~~~~~~R~~~~~~--~~~-~~~~~~v--cr~ 49 (669)
T KOG2231|consen 2 SCAICAFSP--DFVGRGSCGHNEVCATCVVRLRFELN--NRK-CSNECPV--CRR 49 (669)
T ss_pred CcceeecCc--cccccccccccccchhhhhhhhhhcc--ccc-ccccCcc--ccc
Confidence 589998874 3344569999 999999887766543 222 2455663 655
No 172
>PF12660 zf-TFIIIC: Putative zinc-finger of transcription factor IIIC complex; InterPro: IPR024764 This zinc-finger domain is at the very C terminus of a number of different TFIIIC subunit proteins. This domain might be involved in protein-DNA and/or protein-protein interactions [].; PDB: 2J04_C.
Probab=25.29 E-value=21 Score=22.51 Aligned_cols=50 Identities=22% Similarity=0.494 Sum_probs=12.5
Q ss_pred cccccccccCCCCCcccCCC--CccchHHHHHHHHHHHhhhcCCceeeecCCcccccccc
Q psy7604 34 SKCEICFTNMPSTLMTGLEC--SHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVD 91 (118)
Q Consensus 34 ~~C~IC~~~~~~~~~~~l~C--gH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~ 91 (118)
..|+||-..++..+.....| ||.|= .|...++..+ + . ....|+. |...+-
T Consensus 15 E~C~~C~~~i~~~~~~~~~C~~GH~w~-RC~lT~l~i~---~-~-~~r~C~~--C~~~~l 66 (99)
T PF12660_consen 15 EKCPICGAPIPFDDLDEAQCENGHVWP-RCALTFLPIQ---T-P-GVRVCPV--CGRRAL 66 (99)
T ss_dssp --------------SSEEE-TTS-EEE-B-SSS-SBS----S-S--EEE-TT--T--EEE
T ss_pred ccccccccccccCCcCEeECCCCCEEe-eeeeeeeeec---c-C-CeeEcCC--CCCEEe
Confidence 67999998876544433445 78762 2334444322 1 1 2378994 765443
No 173
>PLN02248 cellulose synthase-like protein
Probab=24.92 E-value=56 Score=29.40 Aligned_cols=54 Identities=20% Similarity=0.581 Sum_probs=33.3
Q ss_pred CCcccccc--ccccCCC----CCcccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCccccccccHHHH
Q psy7604 31 SSKSKCEI--CFTNMPS----TLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGTV 95 (118)
Q Consensus 31 ~~~~~C~I--C~~~~~~----~~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~~~~i 95 (118)
.....|.+ |-..... .+..--.|++..|++|+..-+.. .| .|| +|+......++
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-----~~~--~~~~~~~~~~~ 181 (1135)
T PLN02248 122 AKGSSCAMPGCDGKVMRDERGEDLLPCECGFKICRDCYIDAVKS----GG-----ICP--GCKEPYKVTDL 181 (1135)
T ss_pred CCCCcccccCcccccccccccccCCcccccchhHHhHhhhhhhc----CC-----CCC--CCccccccccc
Confidence 34556766 4333221 23444589999999998765552 22 599 79987754443
No 174
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=24.73 E-value=35 Score=26.94 Aligned_cols=34 Identities=24% Similarity=0.603 Sum_probs=25.8
Q ss_pred CCCCccccccccccCCCCCcccCCCCccchHHHHH
Q psy7604 29 STSSKSKCEICFTNMPSTLMTGLECSHRFCTQCWC 63 (118)
Q Consensus 29 ~~~~~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~ 63 (118)
.......|.=|...- ......++||-.||++|+-
T Consensus 35 ~~~gk~~C~RC~~~~-~~~~~~lp~~~~YCr~Cl~ 68 (441)
T COG4098 35 IENGKYRCNRCGNTH-IELFAKLPCGCLYCRNCLM 68 (441)
T ss_pred cccCcEEehhcCCcc-hhhhcccccceEeehhhhh
Confidence 345677899998653 2456678999999999974
No 175
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=24.71 E-value=77 Score=23.08 Aligned_cols=24 Identities=25% Similarity=0.699 Sum_probs=16.8
Q ss_pred ccccccccCCCCCcccCCCCccchHHHHHHHHHH
Q psy7604 35 KCEICFTNMPSTLMTGLECSHRFCTQCWCEYLTT 68 (118)
Q Consensus 35 ~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y~~~ 68 (118)
.|+||.. .-.+.+|..|.+.-+..
T Consensus 1 ~C~iC~~----------~~~~~~C~~C~~~~L~~ 24 (302)
T PF10186_consen 1 QCPICHN----------SRRRFYCANCVNNRLLE 24 (302)
T ss_pred CCCCCCC----------CCCCeECHHHHHHHHHH
Confidence 4899972 22567899999876543
No 176
>PF13963 Transpos_assoc: Transposase-associated domain
Probab=24.68 E-value=1e+02 Score=18.23 Aligned_cols=34 Identities=15% Similarity=0.259 Sum_probs=18.1
Q ss_pred HHHHHHHhhhcCCceeeecCCccccccc--cHHHHh
Q psy7604 63 CEYLTTKIIQEGMGQTIACAAHGCNILV--DDGTVM 96 (118)
Q Consensus 63 ~~y~~~~i~~~g~~~~i~CP~~~C~~~i--~~~~i~ 96 (118)
..+|....+.......|.||=..|+... +.++|.
T Consensus 22 ~~Fi~~A~~~~~~~~~i~CPC~~C~N~~~~~~~~V~ 57 (77)
T PF13963_consen 22 EEFIDFAFSNPSNDNMIRCPCRKCKNEKRQSRDDVH 57 (77)
T ss_pred HHHHHHHHhcccCCCceECCchhhccCccCCHHHHH
Confidence 4455555432222247999977777443 344444
No 177
>KOG2594|consensus
Probab=23.35 E-value=62 Score=25.48 Aligned_cols=21 Identities=19% Similarity=0.493 Sum_probs=17.2
Q ss_pred CCCCccchHHHHHHHHHHHhh
Q psy7604 51 LECSHRFCTQCWCEYLTTKII 71 (118)
Q Consensus 51 l~CgH~fC~~C~~~y~~~~i~ 71 (118)
.+=.-.||.+|+.++++++++
T Consensus 28 ~~~k~~~C~eCFv~~v~~KfR 48 (396)
T KOG2594|consen 28 DGKKDAFCDECFVNNVRNKFR 48 (396)
T ss_pred cccchhHHHHHHHHHHHHHHH
Confidence 333458999999999999985
No 178
>KOG2068|consensus
Probab=22.44 E-value=60 Score=25.06 Aligned_cols=31 Identities=26% Similarity=0.624 Sum_probs=20.6
Q ss_pred ccccccccccCCCCCccc--CCCCccchHHHHH
Q psy7604 33 KSKCEICFTNMPSTLMTG--LECSHRFCTQCWC 63 (118)
Q Consensus 33 ~~~C~IC~~~~~~~~~~~--l~CgH~fC~~C~~ 63 (118)
...|+||.+.....+... -+|++..|..|..
T Consensus 249 ~~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~ 281 (327)
T KOG2068|consen 249 PPSCPICYEDLDLTDSNFLPCPCGFRLCLFCHK 281 (327)
T ss_pred CCCCCCCCCcccccccccccccccccchhhhhh
Confidence 367999999875444333 3789986655543
No 179
>PF10764 Gin: Inhibitor of sigma-G Gin; InterPro: IPR019700 Gin allows sigma-F to delay late forespore transcription by preventing sigma-G to take over before the cell has reached a critical stage of development. Gin is also known as CsfB [].
Probab=22.40 E-value=51 Score=17.82 Aligned_cols=33 Identities=24% Similarity=0.353 Sum_probs=22.6
Q ss_pred ccccccccCCCCCcccCCCCccchHHHHHHHHHHHh
Q psy7604 35 KCEICFTNMPSTLMTGLECSHRFCTQCWCEYLTTKI 70 (118)
Q Consensus 35 ~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y~~~~i 70 (118)
.|-||-.... +.+ .-.|+..|.+|-+..+...+
T Consensus 1 ~CiiC~~~~~--~GI-~I~~~fIC~~CE~~iv~~~~ 33 (46)
T PF10764_consen 1 KCIICGKEKE--EGI-HIYGKFICSDCEKEIVNTET 33 (46)
T ss_pred CeEeCCCcCC--CCE-EEECeEehHHHHHHhccCCC
Confidence 3778877752 222 23488899999888887665
No 180
>PF14353 CpXC: CpXC protein
Probab=22.17 E-value=83 Score=20.27 Aligned_cols=47 Identities=19% Similarity=0.345 Sum_probs=26.8
Q ss_pred cccccccccCCCCCcccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCccccccc
Q psy7604 34 SKCEICFTNMPSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILV 90 (118)
Q Consensus 34 ~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i 90 (118)
.+||-|...+......+.+=. ...=+..+|. +|....+.||. |+..+
T Consensus 2 itCP~C~~~~~~~v~~~I~~~-------~~p~l~e~il-~g~l~~~~CP~--Cg~~~ 48 (128)
T PF14353_consen 2 ITCPHCGHEFEFEVWTSINAD-------EDPELKEKIL-DGSLFSFTCPS--CGHKF 48 (128)
T ss_pred cCCCCCCCeeEEEEEeEEcCc-------CCHHHHHHHH-cCCcCEEECCC--CCCce
Confidence 578888777643221111100 0123456775 67778999995 87654
No 181
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=22.04 E-value=86 Score=20.38 Aligned_cols=44 Identities=23% Similarity=0.591 Sum_probs=27.7
Q ss_pred ccccccccccCCCC------------CcccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCcccc
Q psy7604 33 KSKCEICFTNMPST------------LMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCN 87 (118)
Q Consensus 33 ~~~C~IC~~~~~~~------------~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~ 87 (118)
...|--|...++.. ...-..|++.||.+|- .||...+ -.|| ||.
T Consensus 55 ~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD-~fiHe~L--------h~CP--GC~ 110 (112)
T TIGR00622 55 SRFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCD-VFVHESL--------HCCP--GCI 110 (112)
T ss_pred CCcccCcCCCCCCcccccccccccccceeCCCCCCccccccc-hhhhhhc--------cCCc--CCC
Confidence 34699998877531 1113589999999984 3444443 2488 575
No 182
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=21.04 E-value=55 Score=23.91 Aligned_cols=24 Identities=17% Similarity=0.326 Sum_probs=15.5
Q ss_pred cccccccccCCCCC-cccCCCCccc
Q psy7604 34 SKCEICFTNMPSTL-MTGLECSHRF 57 (118)
Q Consensus 34 ~~C~IC~~~~~~~~-~~~l~CgH~f 57 (118)
+.||+|-..+.... ...-..||.|
T Consensus 3 ~~CP~C~~~l~~~~~~~~C~~~h~f 27 (272)
T PRK11088 3 YQCPLCHQPLTLEENSWICPQNHQF 27 (272)
T ss_pred ccCCCCCcchhcCCCEEEcCCCCCC
Confidence 67999999885332 2223447876
No 183
>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein. Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy [3].
Probab=20.35 E-value=1.2e+02 Score=15.82 Aligned_cols=31 Identities=19% Similarity=0.615 Sum_probs=20.0
Q ss_pred ccccccccccCCCCCcccCCCCc-cchHHHHH
Q psy7604 33 KSKCEICFTNMPSTLMTGLECSH-RFCTQCWC 63 (118)
Q Consensus 33 ~~~C~IC~~~~~~~~~~~l~CgH-~fC~~C~~ 63 (118)
...|..|...+......-+.|.. ..|.+|+.
T Consensus 4 ~~~C~~C~~~i~g~ry~C~~C~d~dlC~~Cf~ 35 (44)
T smart00291 4 SYSCDTCGKPIVGVRYHCLVCPDYDLCQSCFA 35 (44)
T ss_pred CcCCCCCCCCCcCCEEECCCCCCccchHHHHh
Confidence 46788888755433344456744 68888876
Done!