Query psy7604
Match_columns 118
No_of_seqs 194 out of 1015
Neff 8.1
Searched_HMMs 29240
Date Fri Aug 16 22:37:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7604.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7604hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wim_A KIAA0161 protein; ring 99.9 8.6E-25 3E-29 137.2 7.0 86 31-118 3-91 (94)
2 2ecv_A Tripartite motif-contai 99.2 3.2E-11 1.1E-15 72.8 4.9 60 30-96 16-75 (85)
3 2ct2_A Tripartite motif protei 99.1 2.8E-11 9.6E-16 73.8 3.7 62 30-99 12-75 (88)
4 2yu4_A E3 SUMO-protein ligase 99.1 2.8E-10 9.6E-15 70.8 6.9 60 31-95 5-66 (94)
5 2ysl_A Tripartite motif-contai 99.1 5.4E-11 1.9E-15 70.2 3.3 55 30-94 17-71 (73)
6 3lrq_A E3 ubiquitin-protein li 99.1 6.5E-11 2.2E-15 74.4 3.6 69 31-111 20-89 (100)
7 2ecw_A Tripartite motif-contai 99.1 1.3E-10 4.6E-15 70.0 4.7 60 30-96 16-75 (85)
8 1jm7_A BRCA1, breast cancer ty 99.1 1.6E-10 5.4E-15 73.4 4.9 69 32-110 20-88 (112)
9 2egp_A Tripartite motif-contai 99.0 1.5E-11 5.1E-16 73.7 -0.5 60 31-96 10-69 (79)
10 2ecy_A TNF receptor-associated 99.0 1.4E-10 4.6E-15 67.4 3.4 54 30-95 12-65 (66)
11 2csy_A Zinc finger protein 183 99.0 4.6E-10 1.6E-14 67.7 5.9 49 30-91 12-60 (81)
12 1t1h_A Gspef-atpub14, armadill 99.0 2E-10 6.9E-15 68.7 4.1 54 31-96 6-59 (78)
13 2d8t_A Dactylidin, ring finger 99.0 1.9E-10 6.4E-15 67.8 3.9 57 29-98 11-67 (71)
14 2djb_A Polycomb group ring fin 99.0 2.3E-10 7.7E-15 67.6 4.2 57 30-99 12-69 (72)
15 2ysj_A Tripartite motif-contai 99.0 8.9E-10 3.1E-14 63.3 6.1 46 30-83 17-62 (63)
16 3ztg_A E3 ubiquitin-protein li 99.0 1.8E-10 6.3E-15 70.9 3.1 50 30-90 10-60 (92)
17 1e4u_A Transcriptional repress 99.0 1.7E-10 5.8E-15 69.7 2.6 56 31-96 9-66 (78)
18 3hct_A TNF receptor-associated 99.0 4.7E-10 1.6E-14 72.3 4.7 39 29-69 14-52 (118)
19 2xeu_A Ring finger protein 4; 99.0 8.4E-11 2.9E-15 67.5 0.7 56 32-98 2-62 (64)
20 3ng2_A RNF4, snurf, ring finge 99.0 9E-11 3.1E-15 68.8 0.8 57 31-98 8-69 (71)
21 2y43_A E3 ubiquitin-protein li 98.9 4.8E-10 1.6E-14 70.0 3.1 66 32-112 21-89 (99)
22 2ecm_A Ring finger and CHY zin 98.9 6.4E-10 2.2E-14 62.0 3.2 50 31-91 3-54 (55)
23 2yur_A Retinoblastoma-binding 98.9 8.6E-10 3E-14 65.5 4.0 51 29-90 11-62 (74)
24 1g25_A CDK-activating kinase a 98.9 2.3E-10 7.8E-15 66.3 1.4 58 32-99 2-62 (65)
25 2ea6_A Ring finger protein 4; 98.9 1.1E-09 3.7E-14 63.7 3.5 52 29-91 11-67 (69)
26 2kr4_A Ubiquitin conjugation f 98.9 1E-08 3.5E-13 62.6 7.4 53 30-95 11-63 (85)
27 3fl2_A E3 ubiquitin-protein li 98.8 1.7E-09 5.9E-14 70.1 3.7 50 31-92 50-99 (124)
28 4ayc_A E3 ubiquitin-protein li 98.8 1.2E-09 4.3E-14 72.1 2.2 47 32-91 52-98 (138)
29 2kiz_A E3 ubiquitin-protein li 98.8 9.9E-09 3.4E-13 59.8 5.8 52 30-92 11-63 (69)
30 3hcs_A TNF receptor-associated 98.8 3.1E-09 1E-13 72.3 4.1 39 29-69 14-52 (170)
31 3knv_A TNF receptor-associated 98.8 6.7E-09 2.3E-13 69.1 5.5 36 30-67 28-63 (141)
32 3htk_C E3 SUMO-protein ligase 98.8 1.9E-09 6.4E-14 78.4 2.8 57 30-95 178-235 (267)
33 3l11_A E3 ubiquitin-protein li 98.8 1.7E-09 5.7E-14 69.2 2.3 52 29-92 11-62 (115)
34 1rmd_A RAG1; V(D)J recombinati 98.8 3.1E-09 1E-13 68.1 3.4 54 32-97 22-75 (116)
35 2ep4_A Ring finger protein 24; 98.8 7.1E-09 2.4E-13 61.2 4.7 52 30-92 12-64 (74)
36 2ect_A Ring finger protein 126 98.8 1.4E-09 4.7E-14 65.0 1.5 56 30-96 12-68 (78)
37 2ecj_A Tripartite motif-contai 98.8 7.8E-09 2.7E-13 58.1 4.2 46 30-83 12-57 (58)
38 1z6u_A NP95-like ring finger p 98.7 2.2E-09 7.6E-14 72.1 1.6 50 32-93 77-126 (150)
39 1jm7_B BARD1, BRCA1-associated 98.7 5.5E-10 1.9E-14 71.9 -1.5 49 31-94 20-69 (117)
40 4ap4_A E3 ubiquitin ligase RNF 98.7 1.2E-09 4E-14 70.9 -0.1 57 31-98 5-66 (133)
41 2ckl_A Polycomb group ring fin 98.7 5.5E-09 1.9E-13 66.2 2.9 49 31-92 13-62 (108)
42 1iym_A EL5; ring-H2 finger, ub 98.7 4.5E-09 1.5E-13 58.6 2.0 50 31-91 3-54 (55)
43 1x4j_A Ring finger protein 38; 98.7 5E-09 1.7E-13 62.1 2.2 52 30-92 20-72 (75)
44 2kre_A Ubiquitin conjugation f 98.7 1.4E-08 4.7E-13 63.9 4.2 66 30-111 26-91 (100)
45 2ecn_A Ring finger protein 141 98.7 1.7E-09 5.8E-14 63.3 -0.1 51 30-94 12-62 (70)
46 1v87_A Deltex protein 2; ring- 98.7 1.9E-08 6.5E-13 64.0 4.6 55 32-92 24-94 (114)
47 1wgm_A Ubiquitin conjugation f 98.7 3.8E-08 1.3E-12 61.7 5.8 67 30-112 19-86 (98)
48 2l0b_A E3 ubiquitin-protein li 98.7 8.2E-09 2.8E-13 63.6 2.5 51 31-92 38-89 (91)
49 1chc_A Equine herpes virus-1 r 98.7 1.1E-08 3.7E-13 59.4 2.9 48 32-91 4-51 (68)
50 2c2l_A CHIP, carboxy terminus 98.7 3.8E-08 1.3E-12 70.9 6.2 85 8-112 188-272 (281)
51 2ckl_B Ubiquitin ligase protei 98.6 1.5E-08 5.1E-13 68.6 3.5 48 32-91 53-101 (165)
52 1bor_A Transcription factor PM 98.6 5.8E-09 2E-13 58.8 0.1 46 31-92 4-49 (56)
53 2f42_A STIP1 homology and U-bo 98.5 2.9E-07 9.8E-12 63.6 6.3 53 31-95 104-156 (179)
54 4ap4_A E3 ubiquitin ligase RNF 98.5 3.6E-08 1.2E-12 63.7 1.2 58 30-98 69-131 (133)
55 4ic3_A E3 ubiquitin-protein li 98.5 3.3E-08 1.1E-12 58.7 0.9 44 32-92 23-67 (74)
56 2ecl_A Ring-box protein 2; RNF 98.4 7.7E-08 2.6E-12 58.0 1.2 51 32-93 14-77 (81)
57 2ecg_A Baculoviral IAP repeat- 98.4 2.1E-07 7.3E-12 55.2 3.1 44 32-92 24-68 (75)
58 2y1n_A E3 ubiquitin-protein li 98.3 4.8E-07 1.6E-11 69.1 3.9 50 33-94 332-381 (389)
59 2vje_A E3 ubiquitin-protein li 98.2 4.4E-07 1.5E-11 52.4 2.1 48 31-91 6-56 (64)
60 2ea5_A Cell growth regulator w 98.2 1.2E-06 4.1E-11 51.2 3.6 48 28-92 10-58 (68)
61 2d8s_A Cellular modulator of i 98.2 2.3E-06 8E-11 51.6 5.0 54 30-92 12-70 (80)
62 2vje_B MDM4 protein; proto-onc 98.2 5.5E-07 1.9E-11 51.8 1.9 48 31-91 5-55 (63)
63 2yho_A E3 ubiquitin-protein li 98.1 3.6E-07 1.2E-11 54.9 0.4 45 32-93 17-62 (79)
64 3dpl_R Ring-box protein 1; ubi 98.0 3.2E-06 1.1E-10 53.6 3.5 49 32-91 36-100 (106)
65 3t6p_A Baculoviral IAP repeat- 97.8 2.8E-06 9.4E-11 64.0 -0.0 44 32-92 294-338 (345)
66 4a0k_B E3 ubiquitin-protein li 97.6 8.9E-06 3.1E-10 52.4 0.2 49 32-91 47-111 (117)
67 3k1l_B Fancl; UBC, ring, RWD, 97.5 6.7E-05 2.3E-09 56.6 4.1 61 31-94 306-375 (381)
68 2bay_A PRE-mRNA splicing facto 97.5 6.3E-05 2.1E-09 42.9 2.7 53 33-98 3-56 (61)
69 2ct0_A Non-SMC element 1 homol 97.1 0.00019 6.4E-09 42.5 1.7 52 30-91 12-63 (74)
70 2jun_A Midline-1; B-BOX, TRIM, 97.0 0.00045 1.5E-08 42.6 2.8 32 32-64 2-35 (101)
71 3vk6_A E3 ubiquitin-protein li 96.4 0.0012 4.2E-08 41.1 1.6 32 35-68 3-35 (101)
72 2cs3_A Protein C14ORF4, MY039 96.3 0.012 4E-07 35.3 5.3 69 29-101 11-89 (93)
73 1vyx_A ORF K3, K3RING; zinc-bi 96.1 0.013 4.5E-07 32.9 4.8 50 31-91 4-58 (60)
74 2d8v_A Zinc finger FYVE domain 92.0 0.074 2.5E-06 30.5 1.7 33 31-66 6-39 (67)
75 3nw0_A Non-structural maintena 91.4 0.087 3E-06 37.5 2.0 52 32-93 179-230 (238)
76 1weo_A Cellulose synthase, cat 81.6 3.9 0.00013 24.7 5.0 51 31-91 14-69 (93)
77 3mjh_B Early endosome antigen 80.4 0.42 1.4E-05 23.7 0.4 14 31-44 3-16 (34)
78 1z2q_A LM5-1; membrane protein 76.4 2.8 9.5E-05 24.6 3.3 37 29-65 17-55 (84)
79 3t7l_A Zinc finger FYVE domain 75.1 2.5 8.7E-05 25.2 2.9 37 30-66 17-55 (90)
80 2lbm_A Transcriptional regulat 73.3 7.9 0.00027 25.2 5.1 72 31-113 61-138 (142)
81 2o35_A Hypothetical protein DU 73.2 2.2 7.7E-05 26.3 2.3 19 56-74 42-60 (105)
82 3fyb_A Protein of unknown func 72.5 2.2 7.6E-05 26.3 2.1 19 56-74 41-59 (104)
83 1joc_A EEA1, early endosomal a 72.0 1.6 5.5E-05 27.8 1.5 35 31-65 67-103 (125)
84 2yw8_A RUN and FYVE domain-con 69.4 1.9 6.5E-05 25.3 1.3 34 31-64 17-52 (82)
85 1y02_A CARP2, FYVE-ring finger 69.0 1.8 6.2E-05 27.5 1.2 37 30-66 16-54 (120)
86 1zbd_B Rabphilin-3A; G protein 68.8 1.5 5E-05 28.4 0.8 32 31-62 53-87 (134)
87 1x4u_A Zinc finger, FYVE domai 67.5 2.4 8.4E-05 24.9 1.5 34 31-64 12-47 (84)
88 1dvp_A HRS, hepatocyte growth 65.2 6.4 0.00022 27.1 3.6 33 33-65 161-195 (220)
89 3zyq_A Hepatocyte growth facto 65.1 3.3 0.00011 28.9 2.1 33 33-65 164-198 (226)
90 2zet_C Melanophilin; complex, 62.5 2.4 8.2E-05 28.0 0.9 31 32-62 67-100 (153)
91 1z60_A TFIIH basal transcripti 61.8 4.7 0.00016 22.3 1.9 29 34-62 16-45 (59)
92 1vfy_A Phosphatidylinositol-3- 61.7 2.8 9.5E-05 24.0 1.0 31 34-64 12-44 (73)
93 3a1b_A DNA (cytosine-5)-methyl 60.8 5.2 0.00018 26.7 2.3 34 31-67 77-113 (159)
94 1x61_A Thyroid receptor intera 57.6 11 0.00037 20.7 3.1 36 31-67 31-66 (72)
95 2ko5_A Ring finger protein Z; 57.6 5.8 0.0002 24.2 1.9 51 28-93 23-74 (99)
96 1wff_A Riken cDNA 2810002D23 p 57.5 17 0.00058 21.6 3.9 29 31-59 23-51 (85)
97 2ffw_A Midline-1; B-BOX, ring 57.2 18 0.00062 20.7 4.1 36 32-67 29-66 (78)
98 2jmo_A Parkin; IBR, E3 ligase, 56.3 1.9 6.6E-05 25.1 -0.4 12 52-63 55-66 (80)
99 3mpx_A FYVE, rhogef and PH dom 56.0 2.4 8.2E-05 31.9 0.0 38 31-68 373-412 (434)
100 1wfk_A Zinc finger, FYVE domai 55.9 4.9 0.00017 23.9 1.4 33 32-64 8-42 (88)
101 2cur_A Skeletal muscle LIM-pro 54.8 11 0.00039 20.4 2.8 35 31-66 29-63 (69)
102 2pv0_B DNA (cytosine-5)-methyl 49.9 8.6 0.00029 29.2 2.2 33 31-66 91-126 (386)
103 2iyb_E Testin, TESS, TES; LIM 49.8 5.2 0.00018 21.8 0.8 33 31-64 30-63 (65)
104 2d8z_A Four and A half LIM dom 48.4 14 0.00048 20.0 2.5 34 31-65 29-62 (70)
105 1nyp_A Pinch protein; LIM doma 47.7 12 0.00041 20.1 2.1 34 31-65 29-62 (66)
106 2yqq_A Zinc finger HIT domain- 46.2 34 0.0012 18.6 3.8 34 32-68 11-45 (56)
107 2egq_A FHL1 protein; LIM domai 43.8 16 0.00053 20.3 2.2 32 32-64 45-76 (77)
108 1x4l_A Skeletal muscle LIM-pro 43.1 16 0.00054 20.0 2.2 33 31-64 33-65 (72)
109 2dar_A PDZ and LIM domain prot 43.0 18 0.00061 20.8 2.5 33 32-65 50-82 (90)
110 3f6q_B LIM and senescent cell 42.3 9.1 0.00031 20.8 1.0 33 31-64 37-69 (72)
111 1wig_A KIAA1808 protein; LIM d 41.3 9.7 0.00033 21.2 1.1 35 31-65 29-63 (73)
112 1wyh_A SLIM 2, skeletal muscle 40.9 15 0.00052 20.0 1.8 33 31-64 31-63 (72)
113 2a20_A Regulating synaptic mem 39.6 11 0.00037 21.0 1.0 20 31-55 7-26 (62)
114 1x3h_A Leupaxin; paxillin fami 39.3 30 0.001 19.1 3.1 34 31-65 39-72 (80)
115 3oj3_I Tumor necrosis factor a 39.3 18 0.0006 19.2 1.7 14 55-68 35-48 (49)
116 1x4k_A Skeletal muscle LIM-pro 38.8 17 0.00058 19.8 1.8 33 31-64 31-63 (72)
117 1wfp_A Zinc finger (AN1-like) 38.7 40 0.0014 19.4 3.4 32 27-59 19-50 (74)
118 1wd2_A Ariadne-1 protein homol 38.3 8.7 0.0003 21.1 0.5 33 33-65 6-44 (60)
119 2gvi_A Conserved hypothetical 37.3 3.5 0.00012 28.3 -1.5 33 31-64 170-202 (204)
120 1x6a_A LIMK-2, LIM domain kina 36.5 32 0.0011 19.1 2.9 38 30-67 38-76 (81)
121 2ct7_A Ring finger protein 31; 36.2 4.7 0.00016 23.7 -0.9 13 51-63 47-59 (86)
122 2cuq_A Four and A half LIM dom 36.0 26 0.0009 19.4 2.4 34 31-65 39-72 (80)
123 2d8x_A Protein pinch; LIM doma 36.0 24 0.00081 19.1 2.1 36 31-67 29-64 (70)
124 1x64_A Alpha-actinin-2 associa 35.8 19 0.00065 20.7 1.8 10 34-43 26-35 (89)
125 1wg2_A Zinc finger (AN1-like) 35.7 44 0.0015 18.7 3.2 29 30-59 12-40 (64)
126 2jx1_A Myelin transcription fa 34.5 13 0.00046 17.8 0.8 11 79-89 2-12 (31)
127 1x63_A Skeletal muscle LIM-pro 34.5 21 0.00072 20.0 1.8 33 32-65 42-74 (82)
128 2d8y_A Eplin protein; LIM doma 33.9 37 0.0013 19.5 2.9 32 32-64 41-72 (91)
129 2csz_A Synaptotagmin-like prot 32.8 17 0.00057 21.2 1.1 32 30-61 22-56 (76)
130 3i2d_A E3 SUMO-protein ligase 32.1 24 0.00081 26.6 2.1 55 33-95 249-303 (371)
131 2lri_C Autoimmune regulator; Z 31.6 61 0.0021 17.9 3.4 49 31-89 10-59 (66)
132 2l3k_A Rhombotin-2, linker, LI 31.6 29 0.001 21.2 2.3 41 30-70 33-73 (123)
133 2jvx_A NF-kappa-B essential mo 31.4 15 0.00051 17.2 0.6 13 32-44 2-14 (28)
134 3v43_A Histone acetyltransfera 30.9 81 0.0028 19.0 4.2 48 32-83 4-60 (112)
135 1x4s_A Protein FON, zinc finge 30.4 37 0.0013 18.7 2.2 33 33-65 11-45 (59)
136 3vhs_A ATPase wrnip1; zinc fin 30.2 20 0.00068 16.4 0.9 21 77-99 5-25 (29)
137 2dlo_A Thyroid receptor-intera 30.0 42 0.0014 18.7 2.6 35 31-65 39-73 (81)
138 1g47_A Pinch protein; LIM doma 29.8 21 0.00071 19.7 1.2 31 32-63 38-68 (77)
139 2yre_A F-box only protein 30; 29.4 2.4 8.1E-05 26.2 -3.1 41 52-97 43-85 (100)
140 3lqh_A Histone-lysine N-methyl 29.0 12 0.00043 25.2 0.1 75 33-111 2-83 (183)
141 2cu8_A Cysteine-rich protein 2 28.6 21 0.00072 19.7 1.1 32 32-64 35-67 (76)
142 1v6g_A Actin binding LIM prote 27.6 28 0.00094 19.5 1.5 33 31-63 39-71 (81)
143 1a7i_A QCRP2 (LIM1); LIM domai 27.6 22 0.00075 19.9 1.1 34 31-65 32-65 (81)
144 2xjy_A Rhombotin-2; oncoprotei 27.3 29 0.001 21.2 1.7 36 32-68 93-129 (131)
145 1jjd_A Metallothionein, SMTA; 26.6 32 0.0011 18.6 1.5 31 34-65 8-39 (55)
146 1x62_A C-terminal LIM domain p 26.2 17 0.0006 20.3 0.4 12 33-44 15-26 (79)
147 4gut_A Lysine-specific histone 25.9 19 0.00064 29.6 0.7 36 33-68 13-56 (776)
148 3c5k_A HD6, histone deacetylas 25.4 29 0.00099 21.3 1.4 33 33-67 24-60 (109)
149 4fo9_A E3 SUMO-protein ligase 24.8 38 0.0013 25.4 2.1 55 33-95 215-269 (360)
150 1x4w_A Hypothetical protein FL 24.0 61 0.0021 18.2 2.4 31 29-59 11-43 (67)
151 3d00_A Tungsten formylmethanof 23.8 22 0.00077 24.1 0.7 26 31-63 161-186 (191)
152 1wfl_A Zinc finger protein 216 23.3 71 0.0024 18.4 2.6 29 30-59 22-50 (74)
153 1wfh_A Zinc finger (AN1-like) 23.3 71 0.0024 17.8 2.6 29 30-59 12-40 (64)
154 1iml_A CRIP, cysteine rich int 22.1 36 0.0012 18.7 1.2 33 31-64 25-58 (76)
155 2cup_A Skeletal muscle LIM-pro 21.5 47 0.0016 19.2 1.8 47 32-92 32-78 (101)
No 1
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.91 E-value=8.6e-25 Score=137.21 Aligned_cols=86 Identities=26% Similarity=0.570 Sum_probs=75.9
Q ss_pred CCccccccccccCCCCCcccC-CCCccchHHHHHHHHHHHhhhcCCceeeecCCcccccc--ccHHHHhcccCChHHHHH
Q psy7604 31 SSKSKCEICFTNMPSTLMTGL-ECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNIL--VDDGTVMRLVRDPKVKLK 107 (118)
Q Consensus 31 ~~~~~C~IC~~~~~~~~~~~l-~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~--i~~~~i~~ll~~~~~~~k 107 (118)
++.++|+||+++++..+++.+ +|||.||++||++|+..+|. +|....++||..+|+.. ++++.|+.+++ +++++|
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~-~g~~~~i~CP~~~C~~~~~~~~~~i~~ll~-~~~~~k 80 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIK-EGLETAISCPDAACPKQGHLQENEIECMVA-AEIMQR 80 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHH-HCSCCCEECSCTTCSSCCEECHHHHHHHSC-HHHHHH
T ss_pred CCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhh-cCCcccccCccccCCCCCccCHHHHHHHCC-HHHHHH
Confidence 357899999999865556555 69999999999999999996 67656799999999999 99999999997 789999
Q ss_pred HHHHHHhcccC
Q psy7604 108 YQHLITNSFVE 118 (118)
Q Consensus 108 y~~~~~~~yve 118 (118)
|+++++++||+
T Consensus 81 y~~~~~~~~v~ 91 (94)
T 1wim_A 81 YKKLQFERSGP 91 (94)
T ss_dssp HHHHHHHSSCS
T ss_pred HHHHHHHhhhc
Confidence 99999999986
No 2
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=3.2e-11 Score=72.83 Aligned_cols=60 Identities=22% Similarity=0.597 Sum_probs=47.9
Q ss_pred CCCccccccccccCCCCCcccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCccccccccHHHHh
Q psy7604 30 TSSKSKCEICFTNMPSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGTVM 96 (118)
Q Consensus 30 ~~~~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~~~~i~ 96 (118)
..+...|+||++.+ .+.+.+.|||.||..|+..|+..+.. .+ ....||. |+..+..+.+.
T Consensus 16 ~~~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~~~~-~~--~~~~CP~--Cr~~~~~~~~~ 75 (85)
T 2ecv_A 16 VKEEVTCPICLELL--TQPLSLDCGHSFCQACLTANHKKSML-DK--GESSCPV--CRISYQPENIR 75 (85)
T ss_dssp CCCCCCCTTTCSCC--SSCBCCSSSCCBCTTHHHHHHHHHHH-TT--SCCCCTT--TCCSSCSSSCC
T ss_pred ccCCCCCCCCCccc--CCceeCCCCCHHHHHHHHHHHHHhhc-CC--CCCcCCC--CCCccCHHhcC
Confidence 45678999999997 45667899999999999999998764 23 3689995 99998876543
No 3
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=2.8e-11 Score=73.79 Aligned_cols=62 Identities=21% Similarity=0.506 Sum_probs=48.7
Q ss_pred CCCccccccccccCCCCC--cccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCccccccccHHHHhccc
Q psy7604 30 TSSKSKCEICFTNMPSTL--MTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGTVMRLV 99 (118)
Q Consensus 30 ~~~~~~C~IC~~~~~~~~--~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~~~~i~~ll 99 (118)
..+..+|+||++.+...+ ++.+.|||.||..|+..|+... + ....||. |+..+....+..+.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~----~--~~~~CP~--Cr~~~~~~~i~~l~ 75 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASS----I--NGVRCPF--CSKITRITSLTQLT 75 (88)
T ss_dssp CCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHC----S--SCBCCTT--TCCCBCCSSTTTSE
T ss_pred ccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcC----C--CCcCCCC--CCCcccchhHHHHH
Confidence 346789999999985433 6678999999999999999853 1 2578995 99998887776654
No 4
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.10 E-value=2.8e-10 Score=70.82 Aligned_cols=60 Identities=17% Similarity=0.313 Sum_probs=46.8
Q ss_pred CCccccccccccCCCCCcccC-CCCccchHHHHHHHHHHHhhhcCCceeeecCCcccccc-ccHHHH
Q psy7604 31 SSKSKCEICFTNMPSTLMTGL-ECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNIL-VDDGTV 95 (118)
Q Consensus 31 ~~~~~C~IC~~~~~~~~~~~l-~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~-i~~~~i 95 (118)
...+.|+||++.+ .+++.+ .|||.||+.|+..|+...- +......||..+|... +...++
T Consensus 5 ~~~~~CPI~~~~~--~dPV~~~~cGh~f~r~cI~~~l~~~~---~~~~~~~CP~tgc~~~~l~~~~L 66 (94)
T 2yu4_A 5 SSGFTCPITKEEM--KKPVKNKVCGHTYEEDAIVRMIESRQ---KRKKKAYCPQIGCSHTDIRKSDL 66 (94)
T ss_dssp SSCCBCTTTCSBC--SSEEEESSSCCEEEHHHHHHHHHHHH---TTTCCBCCCSTTCCCCCBCGGGE
T ss_pred CcEeECcCcCchh--cCCEEcCCCCCeecHHHHHHHHHHcc---CcCCCCCCCcCcCcccccCHhhC
Confidence 4678999999987 567777 5999999999999998652 1113578999999977 766543
No 5
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=5.4e-11 Score=70.22 Aligned_cols=55 Identities=22% Similarity=0.553 Sum_probs=43.3
Q ss_pred CCCccccccccccCCCCCcccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCccccccccHHH
Q psy7604 30 TSSKSKCEICFTNMPSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGT 94 (118)
Q Consensus 30 ~~~~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~~~~ 94 (118)
..+...|+||++.+ .+.+.+.|||.||..|+..|+.. .+ ....||. |+..+..++
T Consensus 17 ~~~~~~C~IC~~~~--~~~~~~~CgH~fC~~Ci~~~~~~----~~--~~~~CP~--Cr~~~~~~~ 71 (73)
T 2ysl_A 17 LQEEVICPICLDIL--QKPVTIDCGHNFCLKCITQIGET----SC--GFFKCPL--CKTSVRKNA 71 (73)
T ss_dssp CCCCCBCTTTCSBC--SSEEECTTCCEEEHHHHHHHCSS----SC--SCCCCSS--SCCCCCCCC
T ss_pred CccCCEeccCCccc--CCeEEcCCCChhhHHHHHHHHHc----CC--CCCCCCC--CCCcCCccc
Confidence 45678999999987 45677899999999999999862 12 3578995 998887654
No 6
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.08 E-value=6.5e-11 Score=74.42 Aligned_cols=69 Identities=19% Similarity=0.385 Sum_probs=51.4
Q ss_pred CCccccccccccCCCCCccc-CCCCccchHHHHHHHHHHHhhhcCCceeeecCCccccccccHHHHhcccCChHHHHHHH
Q psy7604 31 SSKSKCEICFTNMPSTLMTG-LECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGTVMRLVRDPKVKLKYQ 109 (118)
Q Consensus 31 ~~~~~C~IC~~~~~~~~~~~-l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~~~~i~~ll~~~~~~~ky~ 109 (118)
.+...|+||++.+ .+.+. +.|||.||..|+..|+... ...|| .|+..+..+.+.....-.++.+.++
T Consensus 20 ~~~~~C~IC~~~~--~~p~~~~~CgH~FC~~Ci~~~~~~~--------~~~CP--~Cr~~~~~~~l~~~~~~~~i~~~~~ 87 (100)
T 3lrq_A 20 AEVFRCFICMEKL--RDARLCPHCSKLCCFSCIRRWLTEQ--------RAQCP--HCRAPLQLRELVNCRWAEEVTQQLD 87 (100)
T ss_dssp HHHTBCTTTCSBC--SSEEECTTTCCEEEHHHHHHHHHHT--------CSBCT--TTCCBCCGGGCEECTTHHHHHHHHH
T ss_pred CCCCCCccCCccc--cCccccCCCCChhhHHHHHHHHHHC--------cCCCC--CCCCcCCHHHhHhhHHHHHHHHHHH
Confidence 4578899999997 45666 8999999999999999842 15799 5999998877654322134555555
Q ss_pred HH
Q psy7604 110 HL 111 (118)
Q Consensus 110 ~~ 111 (118)
++
T Consensus 88 ~l 89 (100)
T 3lrq_A 88 TL 89 (100)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 7
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.07 E-value=1.3e-10 Score=70.04 Aligned_cols=60 Identities=18% Similarity=0.445 Sum_probs=46.9
Q ss_pred CCCccccccccccCCCCCcccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCccccccccHHHHh
Q psy7604 30 TSSKSKCEICFTNMPSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGTVM 96 (118)
Q Consensus 30 ~~~~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~~~~i~ 96 (118)
......|+||++.+ .+.+.+.|||.||..|+..|+..... .+ ....|| .|+..+..+.+.
T Consensus 16 ~~~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~~~~-~~--~~~~CP--~Cr~~~~~~~~~ 75 (85)
T 2ecw_A 16 IKEEVTCPICLELL--KEPVSADCNHSFCRACITLNYESNRN-TD--GKGNCP--VCRVPYPFGNLK 75 (85)
T ss_dssp CCTTTSCTTTCSCC--SSCEECTTSCCBCHHHHHHHHHHSBC-TT--SCBCCT--TTCCCCCTTCCE
T ss_pred CccCCCCcCCChhh--CcceeCCCCCHHHHHHHHHHHHhccC-CC--CCCCCC--CCCCcCCHHhCC
Confidence 34678999999997 45567899999999999999987542 22 368999 599998876554
No 8
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.06 E-value=1.6e-10 Score=73.42 Aligned_cols=69 Identities=19% Similarity=0.421 Sum_probs=50.0
Q ss_pred CccccccccccCCCCCcccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCccccccccHHHHhcccCChHHHHHHHH
Q psy7604 32 SKSKCEICFTNMPSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGTVMRLVRDPKVKLKYQH 110 (118)
Q Consensus 32 ~~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~~~~i~~ll~~~~~~~ky~~ 110 (118)
....|+||++.+ .+.+.+.|||.||..|+..|+..+ . ....||. |+..+....+.....-.++.+.+.+
T Consensus 20 ~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~~---~---~~~~CP~--Cr~~~~~~~~~~~~~l~~~~~~~~~ 88 (112)
T 1jm7_A 20 KILECPICLELI--KEPVSTKCDHIFCKFCMLKLLNQK---K---GPSQCPL--CKNDITKRSLQESTRFSQLVEELLK 88 (112)
T ss_dssp HHTSCSSSCCCC--SSCCBCTTSCCCCSHHHHHHHHSS---S---SSCCCTT--TSCCCCTTTCBCCCSSSHHHHHHHH
T ss_pred CCCCCcccChhh--cCeEECCCCCHHHHHHHHHHHHhC---C---CCCCCcC--CCCcCCHhhcCccHHHHHHHHHHHH
Confidence 467899999987 456668999999999999998742 1 2478995 9999988776543322344555544
No 9
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.04 E-value=1.5e-11 Score=73.65 Aligned_cols=60 Identities=22% Similarity=0.497 Sum_probs=46.2
Q ss_pred CCccccccccccCCCCCcccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCccccccccHHHHh
Q psy7604 31 SSKSKCEICFTNMPSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGTVM 96 (118)
Q Consensus 31 ~~~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~~~~i~ 96 (118)
.+..+|+||++.+ .+.+.+.|||.||..|+..|+..... .+ .....||. |+..+....+.
T Consensus 10 ~~~~~C~IC~~~~--~~p~~l~CgH~fC~~Ci~~~~~~~~~-~~-~~~~~CP~--Cr~~~~~~~l~ 69 (79)
T 2egp_A 10 QEEVTCPICLELL--TEPLSLDCGHSLCRACITVSNKEAVT-SM-GGKSSCPV--CGISYSFEHLQ 69 (79)
T ss_dssp CCCCEETTTTEEC--SSCCCCSSSCCCCHHHHSCCCCCCSS-SC-CCCCCCSS--SCCCCCSSGGG
T ss_pred ccCCCCcCCCccc--CCeeECCCCCHHHHHHHHHHHHhccc-CC-CCCCcCCC--CCCcCCHhhCC
Confidence 4678999999997 45666899999999999999876432 11 13689995 99998876554
No 10
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=1.4e-10 Score=67.43 Aligned_cols=54 Identities=31% Similarity=0.655 Sum_probs=42.5
Q ss_pred CCCccccccccccCCCCCcccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCccccccccHHHH
Q psy7604 30 TSSKSKCEICFTNMPSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGTV 95 (118)
Q Consensus 30 ~~~~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~~~~i 95 (118)
..+...|+||++.+ .+.+.+.|||.||..|+..|+. + ....||. |+..+..++|
T Consensus 12 ~~~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~---~-----~~~~CP~--Cr~~~~~~~i 65 (66)
T 2ecy_A 12 VEDKYKCEKCHLVL--CSPKQTECGHRFCESCMAALLS---S-----SSPKCTA--CQESIVKDKV 65 (66)
T ss_dssp CCCCEECTTTCCEE--SSCCCCSSSCCCCHHHHHHHHT---T-----SSCCCTT--TCCCCCTTTC
T ss_pred CCcCCCCCCCChHh--cCeeECCCCCHHHHHHHHHHHH---h-----CcCCCCC--CCcCCChhhc
Confidence 35678999999997 4556689999999999999986 1 1357995 9998876543
No 11
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=4.6e-10 Score=67.66 Aligned_cols=49 Identities=24% Similarity=0.488 Sum_probs=40.1
Q ss_pred CCCccccccccccCCCCCcccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCcccccccc
Q psy7604 30 TSSKSKCEICFTNMPSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVD 91 (118)
Q Consensus 30 ~~~~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~ 91 (118)
......|+||++.+ .+.+.+.|||.||..|+..|+.. ...||. |+..+.
T Consensus 12 ~~~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~---------~~~CP~--Cr~~~~ 60 (81)
T 2csy_A 12 EEIPFRCFICRQAF--QNPVVTKCRHYFCESCALEHFRA---------TPRCYI--CDQPTG 60 (81)
T ss_dssp CCCCSBCSSSCSBC--CSEEECTTSCEEEHHHHHHHHHH---------CSBCSS--SCCBCC
T ss_pred CCCCCCCcCCCchh--cCeeEccCCCHhHHHHHHHHHHC---------CCcCCC--cCcccc
Confidence 34578999999997 45667899999999999999863 247994 999886
No 12
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.03 E-value=2e-10 Score=68.67 Aligned_cols=54 Identities=11% Similarity=0.178 Sum_probs=43.3
Q ss_pred CCccccccccccCCCCCcccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCccccccccHHHHh
Q psy7604 31 SSKSKCEICFTNMPSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGTVM 96 (118)
Q Consensus 31 ~~~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~~~~i~ 96 (118)
.+.+.|+||++.+ .+.+.+.|||.||+.|+..|+.. | ...||. |+..+....+.
T Consensus 6 ~~~~~C~IC~~~~--~~Pv~~~CgH~fc~~Ci~~~~~~-----~---~~~CP~--C~~~~~~~~l~ 59 (78)
T 1t1h_A 6 PEYFRCPISLELM--KDPVIVSTGQTYERSSIQKWLDA-----G---HKTCPK--SQETLLHAGLT 59 (78)
T ss_dssp SSSSSCTTTSCCC--SSEEEETTTEEEEHHHHHHHHTT-----T---CCBCTT--TCCBCSSCCCE
T ss_pred cccCCCCCccccc--cCCEEcCCCCeecHHHHHHHHHH-----C---cCCCCC--CcCCCChhhCc
Confidence 4688999999987 56777899999999999999962 2 357995 99988765443
No 13
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=1.9e-10 Score=67.81 Aligned_cols=57 Identities=21% Similarity=0.407 Sum_probs=45.5
Q ss_pred CCCCccccccccccCCCCCcccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCccccccccHHHHhcc
Q psy7604 29 STSSKSKCEICFTNMPSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGTVMRL 98 (118)
Q Consensus 29 ~~~~~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~~~~i~~l 98 (118)
...+...|+||++.+ .+.+.+.|||.||..|+..|+.. ...||. |+..+....+.+.
T Consensus 11 ~~~~~~~C~IC~~~~--~~~~~~~CgH~fC~~Ci~~~~~~---------~~~CP~--Cr~~~~~~~~~~p 67 (71)
T 2d8t_A 11 PSLTVPECAICLQTC--VHPVSLPCKHVFCYLCVKGASWL---------GKRCAL--CRQEIPEDFLDSG 67 (71)
T ss_dssp SSSSCCBCSSSSSBC--SSEEEETTTEEEEHHHHHHCTTC---------SSBCSS--SCCBCCHHHHSCS
T ss_pred cCCCCCCCccCCccc--CCCEEccCCCHHHHHHHHHHHHC---------CCcCcC--cCchhCHhhccCC
Confidence 345678999999987 55677899999999999988741 257994 9999998887654
No 14
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=2.3e-10 Score=67.63 Aligned_cols=57 Identities=26% Similarity=0.524 Sum_probs=44.4
Q ss_pred CCCccccccccccCCCCCcccC-CCCccchHHHHHHHHHHHhhhcCCceeeecCCccccccccHHHHhccc
Q psy7604 30 TSSKSKCEICFTNMPSTLMTGL-ECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGTVMRLV 99 (118)
Q Consensus 30 ~~~~~~C~IC~~~~~~~~~~~l-~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~~~~i~~ll 99 (118)
..+...|+||++.+ .+.+.+ .|||.||..|+..|+.. ...|| .|+..+...++...+
T Consensus 12 ~~~~~~C~IC~~~~--~~p~~~~~CgH~fC~~Ci~~~~~~---------~~~CP--~Cr~~~~~~~~~~~~ 69 (72)
T 2djb_A 12 LTPYILCSICKGYL--IDATTITECLHTFCKSCIVRHFYY---------SNRCP--KCNIVVHQTQPLSGP 69 (72)
T ss_dssp CCGGGSCTTTSSCC--SSCEECSSSCCEECHHHHHHHHHH---------CSSCT--TTCCCCCSSCSCCCC
T ss_pred cCCCCCCCCCChHH--HCcCEECCCCCHHHHHHHHHHHHc---------CCcCC--CcCcccCcccccccC
Confidence 45678999999987 345554 99999999999999963 24799 599998876665544
No 15
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=8.9e-10 Score=63.27 Aligned_cols=46 Identities=22% Similarity=0.557 Sum_probs=36.7
Q ss_pred CCCccccccccccCCCCCcccCCCCccchHHHHHHHHHHHhhhcCCceeeecCC
Q psy7604 30 TSSKSKCEICFTNMPSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAA 83 (118)
Q Consensus 30 ~~~~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~ 83 (118)
..+...|+||++.+ .+.+.+.|||.||..|+.+|+... + ...+||.
T Consensus 17 ~~~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~~----~--~~~~CP~ 62 (63)
T 2ysj_A 17 LQEEVICPICLDIL--QKPVTIDCGHNFCLKCITQIGETS----C--GFFKCPL 62 (63)
T ss_dssp CCCCCBCTTTCSBC--SSCEECTTSSEECHHHHHHHHHHC----S--SCCCCSC
T ss_pred CccCCCCCcCCchh--CCeEEeCCCCcchHHHHHHHHHcC----C--CCCcCcC
Confidence 45678999999997 456778999999999999999841 2 2468984
No 16
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.00 E-value=1.8e-10 Score=70.90 Aligned_cols=50 Identities=22% Similarity=0.477 Sum_probs=40.3
Q ss_pred CCCccccccccccCCCCCcccCC-CCccchHHHHHHHHHHHhhhcCCceeeecCCccccccc
Q psy7604 30 TSSKSKCEICFTNMPSTLMTGLE-CSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILV 90 (118)
Q Consensus 30 ~~~~~~C~IC~~~~~~~~~~~l~-CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i 90 (118)
..+.+.|+||++.+ .+++.+. |||.||..|+..|+.. .+ ...||. |+..+
T Consensus 10 ~~~~~~C~IC~~~~--~~p~~~~~CgH~fC~~Ci~~~~~~----~~---~~~CP~--Cr~~~ 60 (92)
T 3ztg_A 10 IPDELLCLICKDIM--TDAVVIPCCGNSYCDECIRTALLE----SD---EHTCPT--CHQND 60 (92)
T ss_dssp CCTTTEETTTTEEC--SSCEECTTTCCEECHHHHHHHHHH----CT---TCCCTT--TCCSS
T ss_pred CCcCCCCCCCChhh--cCceECCCCCCHHHHHHHHHHHHh----cC---CCcCcC--CCCcC
Confidence 35678999999987 4567777 9999999999999873 22 368995 99886
No 17
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.99 E-value=1.7e-10 Score=69.70 Aligned_cols=56 Identities=16% Similarity=0.518 Sum_probs=42.2
Q ss_pred CCccccccccccCCCCCcccC--CCCccchHHHHHHHHHHHhhhcCCceeeecCCccccccccHHHHh
Q psy7604 31 SSKSKCEICFTNMPSTLMTGL--ECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGTVM 96 (118)
Q Consensus 31 ~~~~~C~IC~~~~~~~~~~~l--~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~~~~i~ 96 (118)
.+..+|+||++.+...+...+ .|||.||..||..++. ++ ...|| .|+..+....+.
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~-----~~---~~~CP--~CR~~~~~~~~~ 66 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRT-----DE---NGLCP--ACRKPYPEDPAV 66 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTT-----SS---CSBCT--TTCCBCSSCSSC
T ss_pred ccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHh-----cC---CCCCC--CCCCccCCCchh
Confidence 467899999998854444444 4999999999998764 12 36899 599999876553
No 18
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.98 E-value=4.7e-10 Score=72.31 Aligned_cols=39 Identities=28% Similarity=0.675 Sum_probs=32.7
Q ss_pred CCCCccccccccccCCCCCcccCCCCccchHHHHHHHHHHH
Q psy7604 29 STSSKSKCEICFTNMPSTLMTGLECSHRFCTQCWCEYLTTK 69 (118)
Q Consensus 29 ~~~~~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y~~~~ 69 (118)
...+.+.|+||++.+ .+.+.+.|||.||..|+..|+...
T Consensus 14 ~~~~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~~ 52 (118)
T 3hct_A 14 PLESKYECPICLMAL--REAVQTPCGHRFCKACIIKSIRDA 52 (118)
T ss_dssp CCCGGGBCTTTCSBC--SSEEECTTSCEEEHHHHHHHHHHH
T ss_pred CCCCCCCCCcCChhh--cCeEECCcCChhhHHHHHHHHhhC
Confidence 445678999999987 456778999999999999998754
No 19
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.97 E-value=8.4e-11 Score=67.49 Aligned_cols=56 Identities=25% Similarity=0.654 Sum_probs=43.1
Q ss_pred CccccccccccCCC-----CCcccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCccccccccHHHHhcc
Q psy7604 32 SKSKCEICFTNMPS-----TLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGTVMRL 98 (118)
Q Consensus 32 ~~~~C~IC~~~~~~-----~~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~~~~i~~l 98 (118)
+..+|+||++.+.. .....+.|||.||..|+.+|+.. ...|| .|+..+..+++..+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~---------~~~CP--~Cr~~~~~~~~~~~ 62 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN---------ANTCP--TCRKKINHKRYHPI 62 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH---------CSBCT--TTCCBCTTTCEEEC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc---------CCCCC--CCCccCCccceeee
Confidence 46789999998732 12366899999999999999874 13799 49999987766554
No 20
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.97 E-value=9e-11 Score=68.83 Aligned_cols=57 Identities=26% Similarity=0.655 Sum_probs=43.6
Q ss_pred CCccccccccccCCC-----CCcccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCccccccccHHHHhcc
Q psy7604 31 SSKSKCEICFTNMPS-----TLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGTVMRL 98 (118)
Q Consensus 31 ~~~~~C~IC~~~~~~-----~~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~~~~i~~l 98 (118)
.+...|+||++.+.. ...+.+.|||.||..|+..|+..+ ..|| .|+..+....+..+
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~---------~~CP--~Cr~~~~~~~~~~~ 69 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA---------NTCP--TCRKKINHKRYHPI 69 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC---------SBCT--TTCCBCCCCSCCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC---------CCCC--CCCCccChhheeec
Confidence 467899999998732 123678999999999999998631 3799 49999887766543
No 21
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.93 E-value=4.8e-10 Score=70.01 Aligned_cols=66 Identities=20% Similarity=0.582 Sum_probs=47.8
Q ss_pred CccccccccccCCCCCcccC-CCCccchHHHHHHHHHHHhhhcCCceeeecCCccccccccHHHHhc--ccCChHHHHHH
Q psy7604 32 SKSKCEICFTNMPSTLMTGL-ECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGTVMR--LVRDPKVKLKY 108 (118)
Q Consensus 32 ~~~~C~IC~~~~~~~~~~~l-~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~~~~i~~--ll~~~~~~~ky 108 (118)
+...|+||++.+ .+.+.+ .|||.||..|+..|+.. ...|| .|+..+....+.. .+ .++.++|
T Consensus 21 ~~~~C~IC~~~~--~~p~~~~~CgH~fC~~Ci~~~~~~---------~~~CP--~Cr~~~~~~~l~~n~~l--~~~i~~~ 85 (99)
T 2y43_A 21 DLLRCGICFEYF--NIAMIIPQCSHNYCSLCIRKFLSY---------KTQCP--TCCVTVTEPDLKNNRIL--DELVKSL 85 (99)
T ss_dssp HHTBCTTTCSBC--SSEEECTTTCCEEEHHHHHHHHTT---------CCBCT--TTCCBCCGGGCEECHHH--HHHHHHH
T ss_pred CCCCcccCChhh--CCcCEECCCCCHhhHHHHHHHHHC---------CCCCC--CCCCcCChhhCCcCHHH--HHHHHHH
Confidence 467899999997 445555 99999999999999862 24799 5999988755432 22 2456666
Q ss_pred HHHH
Q psy7604 109 QHLI 112 (118)
Q Consensus 109 ~~~~ 112 (118)
.+..
T Consensus 86 ~~~~ 89 (99)
T 2y43_A 86 NFAR 89 (99)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 22
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.92 E-value=6.4e-10 Score=62.03 Aligned_cols=50 Identities=26% Similarity=0.586 Sum_probs=39.0
Q ss_pred CCccccccccccCCC--CCcccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCcccccccc
Q psy7604 31 SSKSKCEICFTNMPS--TLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVD 91 (118)
Q Consensus 31 ~~~~~C~IC~~~~~~--~~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~ 91 (118)
.....|+||++.+.. .....+.|||.||..|+..|+... ..||. |+..++
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~---------~~CP~--Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG---------YRCPL--CSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT---------CCCTT--SCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC---------CcCCC--CCCcCC
Confidence 356789999999843 235678999999999999998742 47994 887664
No 23
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.92 E-value=8.6e-10 Score=65.49 Aligned_cols=51 Identities=22% Similarity=0.470 Sum_probs=40.2
Q ss_pred CCCCccccccccccCCCCCcccCC-CCccchHHHHHHHHHHHhhhcCCceeeecCCccccccc
Q psy7604 29 STSSKSKCEICFTNMPSTLMTGLE-CSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILV 90 (118)
Q Consensus 29 ~~~~~~~C~IC~~~~~~~~~~~l~-CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i 90 (118)
.......|+||++.+ .+.+.+. |||.||..|+..|+... + ...||. |+..+
T Consensus 11 ~~~~~~~C~IC~~~~--~~p~~~~~CgH~fC~~Ci~~~~~~~----~---~~~CP~--Cr~~~ 62 (74)
T 2yur_A 11 PIPDELLCLICKDIM--TDAVVIPCCGNSYCDECIRTALLES----D---EHTCPT--CHQND 62 (74)
T ss_dssp CSCGGGSCSSSCCCC--TTCEECSSSCCEECTTHHHHHHHHS----S---SSCCSS--SCCSS
T ss_pred cCCCCCCCcCCChHH--hCCeEcCCCCCHHHHHHHHHHHHhc----C---CCcCCC--CCCcC
Confidence 345678999999987 4566677 99999999999999842 2 368995 99864
No 24
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.92 E-value=2.3e-10 Score=66.26 Aligned_cols=58 Identities=17% Similarity=0.403 Sum_probs=43.1
Q ss_pred Cccccccccc-cCCCC--CcccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCccccccccHHHHhccc
Q psy7604 32 SKSKCEICFT-NMPST--LMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGTVMRLV 99 (118)
Q Consensus 32 ~~~~C~IC~~-~~~~~--~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~~~~i~~ll 99 (118)
+..+|+||++ .+... ..+.+.|||.||..|+.+++.. + ...|| .|+..+..+.++..+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~-----~---~~~CP--~Cr~~~~~~~~~~~~ 62 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVR-----G---AGNCP--ECGTPLRKSNFRVQL 62 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHT-----T---SSSCT--TTCCCCSSCCCEEEC
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHc-----C---CCcCC--CCCCccccccceeec
Confidence 4578999999 54222 1246799999999999999762 2 35899 499999887776544
No 25
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.89 E-value=1.1e-09 Score=63.65 Aligned_cols=52 Identities=29% Similarity=0.743 Sum_probs=39.5
Q ss_pred CCCCccccccccccCCC-----CCcccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCcccccccc
Q psy7604 29 STSSKSKCEICFTNMPS-----TLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVD 91 (118)
Q Consensus 29 ~~~~~~~C~IC~~~~~~-----~~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~ 91 (118)
.......|+||++.+.. ..++.+.|||.||..|+..|+.. ...||. |+..+.
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~---------~~~CP~--Cr~~~~ 67 (69)
T 2ea6_A 11 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN---------ANTCPT--CRKKIN 67 (69)
T ss_dssp CTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH---------CSSCTT--TCCCCC
T ss_pred CCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc---------CCCCCC--CCCccC
Confidence 34567899999998732 11266899999999999999873 137994 988765
No 26
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.87 E-value=1e-08 Score=62.60 Aligned_cols=53 Identities=9% Similarity=-0.055 Sum_probs=43.3
Q ss_pred CCCccccccccccCCCCCcccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCccccccccHHHH
Q psy7604 30 TSSKSKCEICFTNMPSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGTV 95 (118)
Q Consensus 30 ~~~~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~~~~i 95 (118)
....+.|+||++-+ .+++.+.|||.||+.|+..|+.. . ..||. |+..++...+
T Consensus 11 ~p~~~~CpI~~~~m--~dPV~~~cGhtf~r~~I~~~l~~----~-----~~cP~--~~~~l~~~~l 63 (85)
T 2kr4_A 11 APDEFRDPLMDTLM--TDPVRLPSGTVMDRSIILRHLLN----S-----PTDPF--NRQMLTESML 63 (85)
T ss_dssp CCTTTBCTTTCSBC--SSEEECTTSCEEEHHHHHHHHHH----C-----SBCTT--TCCBCCGGGC
T ss_pred CchheECcccCchh--cCCeECCCCCEECHHHHHHHHhc----C-----CCCCC--CcCCCChHhc
Confidence 34689999999987 67888889999999999999973 1 36995 8888887643
No 27
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.85 E-value=1.7e-09 Score=70.08 Aligned_cols=50 Identities=18% Similarity=0.451 Sum_probs=40.8
Q ss_pred CCccccccccccCCCCCcccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCccccccccH
Q psy7604 31 SSKSKCEICFTNMPSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDD 92 (118)
Q Consensus 31 ~~~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~~ 92 (118)
.....|+||++.+ .+++.++|||.||..|+..|+.. ....|| .|+..+..
T Consensus 50 ~~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~--------~~~~CP--~Cr~~~~~ 99 (124)
T 3fl2_A 50 EETFQCICCQELV--FRPITTVCQHNVCKDCLDRSFRA--------QVFSCP--ACRYDLGR 99 (124)
T ss_dssp HHHTBCTTTSSBC--SSEEECTTSCEEEHHHHHHHHHT--------TCCBCT--TTCCBCCT
T ss_pred ccCCCCCcCChHH--cCcEEeeCCCcccHHHHHHHHhH--------CcCCCC--CCCccCCC
Confidence 3467899999997 56777899999999999999871 135899 49998876
No 28
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.82 E-value=1.2e-09 Score=72.14 Aligned_cols=47 Identities=28% Similarity=0.725 Sum_probs=37.7
Q ss_pred CccccccccccCCCCCcccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCcccccccc
Q psy7604 32 SKSKCEICFTNMPSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVD 91 (118)
Q Consensus 32 ~~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~ 91 (118)
+..+|+||++.+ .+++.++|||.||..|+..|+.. ...||. |+..+.
T Consensus 52 ~~~~C~iC~~~~--~~~~~~~CgH~fc~~Ci~~~~~~---------~~~CP~--Cr~~~~ 98 (138)
T 4ayc_A 52 NELQCIICSEYF--IEAVTLNCAHSFCSYCINEWMKR---------KIECPI--CRKDIK 98 (138)
T ss_dssp HHSBCTTTCSBC--SSEEEETTSCEEEHHHHHHHTTT---------CSBCTT--TCCBCC
T ss_pred ccCCCcccCccc--CCceECCCCCCccHHHHHHHHHc---------CCcCCC--CCCcCC
Confidence 356899999997 56778899999999999988752 246994 988775
No 29
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.81 E-value=9.9e-09 Score=59.78 Aligned_cols=52 Identities=25% Similarity=0.620 Sum_probs=40.0
Q ss_pred CCCccccccccccCCCC-CcccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCccccccccH
Q psy7604 30 TSSKSKCEICFTNMPST-LMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDD 92 (118)
Q Consensus 30 ~~~~~~C~IC~~~~~~~-~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~~ 92 (118)
......|+||++.+... ....+.|||.||..|+..|+..+ ..||. |+..+..
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~---------~~CP~--Cr~~~~~ 63 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITN---------KKCPI--CRVDIEA 63 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHC---------SBCTT--TCSBSCS
T ss_pred CCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcC---------CCCcC--cCccccC
Confidence 34567899999988543 45678999999999999998741 25994 9887653
No 30
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.81 E-value=3.1e-09 Score=72.34 Aligned_cols=39 Identities=28% Similarity=0.675 Sum_probs=32.9
Q ss_pred CCCCccccccccccCCCCCcccCCCCccchHHHHHHHHHHH
Q psy7604 29 STSSKSKCEICFTNMPSTLMTGLECSHRFCTQCWCEYLTTK 69 (118)
Q Consensus 29 ~~~~~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y~~~~ 69 (118)
...+.+.|+||++.+ .+++.+.|||.||..|+..++..+
T Consensus 14 ~~~~~~~C~IC~~~~--~~pv~~~CgH~fC~~Ci~~~~~~~ 52 (170)
T 3hcs_A 14 PLESKYECPICLMAL--REAVQTPCGHRFCKACIIKSIRDA 52 (170)
T ss_dssp CCCGGGBCTTTCSBC--SSEEECTTSCEEEHHHHHHHHHHH
T ss_pred CCCCCCCCCCCChhh--cCcEECCCCCHHHHHHHHHHHHhC
Confidence 445788999999997 456778999999999999999753
No 31
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.81 E-value=6.7e-09 Score=69.09 Aligned_cols=36 Identities=25% Similarity=0.615 Sum_probs=30.9
Q ss_pred CCCccccccccccCCCCCcccCCCCccchHHHHHHHHH
Q psy7604 30 TSSKSKCEICFTNMPSTLMTGLECSHRFCTQCWCEYLT 67 (118)
Q Consensus 30 ~~~~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y~~ 67 (118)
..+.+.|+||++.+ .+.+.+.|||.||..|+..|+.
T Consensus 28 l~~~~~C~IC~~~~--~~pv~~~CgH~FC~~Ci~~~~~ 63 (141)
T 3knv_A 28 LEAKYLCSACRNVL--RRPFQAQCGHRYCSFCLASILS 63 (141)
T ss_dssp CCGGGBCTTTCSBC--SSEEECTTSCEEEHHHHHHHGG
T ss_pred CCcCcCCCCCChhh--cCcEECCCCCccCHHHHHHHHh
Confidence 35678999999987 5567789999999999999975
No 32
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.80 E-value=1.9e-09 Score=78.38 Aligned_cols=57 Identities=19% Similarity=0.262 Sum_probs=46.0
Q ss_pred CCCccccccccccCCCCCccc-CCCCccchHHHHHHHHHHHhhhcCCceeeecCCccccccccHHHH
Q psy7604 30 TSSKSKCEICFTNMPSTLMTG-LECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGTV 95 (118)
Q Consensus 30 ~~~~~~C~IC~~~~~~~~~~~-l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~~~~i 95 (118)
....+.||||++.+ .+++. ..|||.||+.|+..|+.. .| ...||..||+..+...++
T Consensus 178 ~~~el~CPIcl~~f--~DPVts~~CGHsFcR~cI~~~~~~----~~---~~~CPvtGCr~~l~~~dL 235 (267)
T 3htk_C 178 GKIELTCPITCKPY--EAPLISRKCNHVFDRDGIQNYLQG----YT---TRDCPQAACSQVVSMRDF 235 (267)
T ss_dssp SBCCSBCTTTSSBC--SSEEEESSSCCEEEHHHHHHHSTT----CS---CEECSGGGCSCEECGGGE
T ss_pred CceeeECcCccCcc--cCCeeeCCCCCcccHHHHHHHHHh----CC---CCCCCcccccCcCchhhC
Confidence 35678999999998 55665 699999999999999862 22 478999999999887654
No 33
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.80 E-value=1.7e-09 Score=69.23 Aligned_cols=52 Identities=23% Similarity=0.626 Sum_probs=41.2
Q ss_pred CCCCccccccccccCCCCCcccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCccccccccH
Q psy7604 29 STSSKSKCEICFTNMPSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDD 92 (118)
Q Consensus 29 ~~~~~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~~ 92 (118)
...+.+.|+||++.+ .+.+.+.|||.||..|+..|+.. + ...|| .|+..+..
T Consensus 11 ~~~~~~~C~iC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~-----~---~~~CP--~Cr~~~~~ 62 (115)
T 3l11_A 11 PSLSECQCGICMEIL--VEPVTLPCNHTLCKPCFQSTVEK-----A---SLCCP--FCRRRVSS 62 (115)
T ss_dssp CCHHHHBCTTTCSBC--SSCEECTTSCEECHHHHCCCCCT-----T---TSBCT--TTCCBCHH
T ss_pred CCCCCCCCccCCccc--CceeEcCCCCHHhHHHHHHHHhH-----C---cCCCC--CCCcccCc
Confidence 344678999999987 45677899999999999988752 2 36899 59998875
No 34
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.79 E-value=3.1e-09 Score=68.09 Aligned_cols=54 Identities=20% Similarity=0.420 Sum_probs=42.4
Q ss_pred CccccccccccCCCCCcccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCccccccccHHHHhc
Q psy7604 32 SKSKCEICFTNMPSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGTVMR 97 (118)
Q Consensus 32 ~~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~~~~i~~ 97 (118)
+.+.|+||++.+ .+++.+.|||.||..|+..|+... ...||. |+..+....+..
T Consensus 22 ~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~~--------~~~CP~--Cr~~~~~~~~~~ 75 (116)
T 1rmd_A 22 KSISCQICEHIL--ADPVETSCKHLFCRICILRCLKVM--------GSYCPS--CRYPCFPTDLES 75 (116)
T ss_dssp HHTBCTTTCSBC--SSEEECTTSCEEEHHHHHHHHHHT--------CSBCTT--TCCBCCGGGCBC
T ss_pred CCCCCCCCCcHh--cCcEEcCCCCcccHHHHHHHHhHC--------cCcCCC--CCCCCCHhhccc
Confidence 467899999987 556678999999999999999752 236884 888887766543
No 35
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.79 E-value=7.1e-09 Score=61.21 Aligned_cols=52 Identities=21% Similarity=0.570 Sum_probs=39.7
Q ss_pred CCCccccccccccCCCCC-cccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCccccccccH
Q psy7604 30 TSSKSKCEICFTNMPSTL-MTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDD 92 (118)
Q Consensus 30 ~~~~~~C~IC~~~~~~~~-~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~~ 92 (118)
......|+||++.+.... ...+.|||.||..|+..|+..+ ..||. |+..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~---------~~CP~--Cr~~~~~ 64 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR---------KVCPL--CNMPVLQ 64 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC---------SBCTT--TCCBCSS
T ss_pred CCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC---------CcCCC--cCccccc
Confidence 445778999999985433 4456999999999999998631 27994 9987753
No 36
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.78 E-value=1.4e-09 Score=64.96 Aligned_cols=56 Identities=20% Similarity=0.474 Sum_probs=43.0
Q ss_pred CCCccccccccccCCCCC-cccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCccccccccHHHHh
Q psy7604 30 TSSKSKCEICFTNMPSTL-MTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGTVM 96 (118)
Q Consensus 30 ~~~~~~C~IC~~~~~~~~-~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~~~~i~ 96 (118)
......|+||++.+.... ...+.|||.||..|+..|+.. ...||. |+..+....+.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~---------~~~CP~--Cr~~~~~~~~~ 68 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ---------HDSCPV--CRKSLTGQNTA 68 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT---------TCSCTT--TCCCCCCSCSC
T ss_pred CCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc---------CCcCcC--cCCccCCcccC
Confidence 456789999999985433 455799999999999999852 137994 99988876554
No 37
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.77 E-value=7.8e-09 Score=58.06 Aligned_cols=46 Identities=20% Similarity=0.673 Sum_probs=35.4
Q ss_pred CCCccccccccccCCCCCcccCCCCccchHHHHHHHHHHHhhhcCCceeeecCC
Q psy7604 30 TSSKSKCEICFTNMPSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAA 83 (118)
Q Consensus 30 ~~~~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~ 83 (118)
..+...|+||++.+ .+.+.+.|||.||..|+.+|+.. + + ....||.
T Consensus 12 ~~~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~-~---~--~~~~CP~ 57 (58)
T 2ecj_A 12 LQVEASCSVCLEYL--KEPVIIECGHNFCKACITRWWED-L---E--RDFPCPV 57 (58)
T ss_dssp SCCCCBCSSSCCBC--SSCCCCSSCCCCCHHHHHHHTTS-S---C--CSCCCSC
T ss_pred cccCCCCccCCccc--CccEeCCCCCccCHHHHHHHHHh-c---C--CCCCCCC
Confidence 34678999999997 44566899999999999999763 1 1 2467884
No 38
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.74 E-value=2.2e-09 Score=72.10 Aligned_cols=50 Identities=20% Similarity=0.458 Sum_probs=41.3
Q ss_pred CccccccccccCCCCCcccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCccccccccHH
Q psy7604 32 SKSKCEICFTNMPSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDG 93 (118)
Q Consensus 32 ~~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~~~ 93 (118)
..+.|+||++.+ .+.+.+.|||.||..|+..|+.. + ...||. |+..+...
T Consensus 77 ~~~~C~IC~~~~--~~pv~~~CgH~fC~~Ci~~~~~~-----~---~~~CP~--Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELV--YQPVTTECFHNVCKDCLQRSFKA-----Q---VFSCPA--CRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBC--SSEEECTTSCEEEHHHHHHHHHT-----T---CCBCTT--TCCBCCTT
T ss_pred cCCEeecCChhh--cCCEEcCCCCchhHHHHHHHHHh-----C---CCcCCC--CCccCCCC
Confidence 457899999987 56677899999999999999972 1 357995 99998876
No 39
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.74 E-value=5.5e-10 Score=71.88 Aligned_cols=49 Identities=20% Similarity=0.489 Sum_probs=39.2
Q ss_pred CCccccccccccCCCCCcccC-CCCccchHHHHHHHHHHHhhhcCCceeeecCCccccccccHHH
Q psy7604 31 SSKSKCEICFTNMPSTLMTGL-ECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGT 94 (118)
Q Consensus 31 ~~~~~C~IC~~~~~~~~~~~l-~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~~~~ 94 (118)
.+...|+||++.+ .+++.+ .|||.||..|+..|+. ..||. |+..+....
T Consensus 20 ~~~~~C~IC~~~~--~~pv~~~~CgH~fC~~Ci~~~~~-----------~~CP~--Cr~~~~~~~ 69 (117)
T 1jm7_B 20 EKLLRCSRCTNIL--REPVCLGGCEHIFCSNCVSDCIG-----------TGCPV--CYTPAWIQD 69 (117)
T ss_dssp HHTTSCSSSCSCC--SSCBCCCSSSCCBCTTTGGGGTT-----------TBCSS--SCCBCSCSS
T ss_pred hhCCCCCCCChHh--hCccEeCCCCCHHHHHHHHHHhc-----------CCCcC--CCCcCcccc
Confidence 3578899999987 556777 9999999999988764 46995 998886543
No 40
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.73 E-value=1.2e-09 Score=70.90 Aligned_cols=57 Identities=26% Similarity=0.660 Sum_probs=43.6
Q ss_pred CCccccccccccCCC-----CCcccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCccccccccHHHHhcc
Q psy7604 31 SSKSKCEICFTNMPS-----TLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGTVMRL 98 (118)
Q Consensus 31 ~~~~~C~IC~~~~~~-----~~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~~~~i~~l 98 (118)
.+..+|+||++.+.. ...+.+.|||.||.+|+.+|+.. ...|| .|+..++...+..+
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~---------~~~CP--~Cr~~~~~~~l~~l 66 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN---------ANTCP--TCRKKINHKRYHPI 66 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT---------CSBCT--TTCCBCTTTCEEEC
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh---------CCCCC--CCCCcCcccccccc
Confidence 457899999998731 12277899999999999999862 13799 49999887766544
No 41
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.72 E-value=5.5e-09 Score=66.15 Aligned_cols=49 Identities=31% Similarity=0.711 Sum_probs=39.1
Q ss_pred CCccccccccccCCCCCcccC-CCCccchHHHHHHHHHHHhhhcCCceeeecCCccccccccH
Q psy7604 31 SSKSKCEICFTNMPSTLMTGL-ECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDD 92 (118)
Q Consensus 31 ~~~~~C~IC~~~~~~~~~~~l-~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~~ 92 (118)
.+...|+||++.+ .+.+.+ .|||.||..|+..|+.. ...||. |+..+..
T Consensus 13 ~~~~~C~IC~~~~--~~p~~~~~CgH~fC~~Ci~~~~~~---------~~~CP~--Cr~~~~~ 62 (108)
T 2ckl_A 13 NPHLMCVLCGGYF--IDATTIIECLHSFCKTCIVRYLET---------SKYCPI--CDVQVHK 62 (108)
T ss_dssp GGGTBCTTTSSBC--SSEEEETTTCCEEEHHHHHHHHTS---------CSBCTT--TCCBSCS
T ss_pred CCcCCCccCChHH--hCcCEeCCCCChhhHHHHHHHHHh---------CCcCcC--CCccccc
Confidence 4578999999997 456665 99999999999999862 157995 9888764
No 42
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.71 E-value=4.5e-09 Score=58.57 Aligned_cols=50 Identities=22% Similarity=0.574 Sum_probs=37.2
Q ss_pred CCccccccccccCCCCC-cccCC-CCccchHHHHHHHHHHHhhhcCCceeeecCCcccccccc
Q psy7604 31 SSKSKCEICFTNMPSTL-MTGLE-CSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVD 91 (118)
Q Consensus 31 ~~~~~C~IC~~~~~~~~-~~~l~-CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~ 91 (118)
.+..+|+||++.+..++ ...+. |||.||..|+.+|+.. ...||. |+..+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~---------~~~CP~--Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS---------HSTCPL--CRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT---------CCSCSS--SCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc---------CCcCcC--CCCEeE
Confidence 34678999999985433 45565 9999999999998742 236994 887653
No 43
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.70 E-value=5e-09 Score=62.13 Aligned_cols=52 Identities=23% Similarity=0.595 Sum_probs=40.0
Q ss_pred CCCccccccccccCCCCC-cccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCccccccccH
Q psy7604 30 TSSKSKCEICFTNMPSTL-MTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDD 92 (118)
Q Consensus 30 ~~~~~~C~IC~~~~~~~~-~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~~ 92 (118)
......|+||++.+...+ +..+.|||.||..|+..|+..+ ..||. |+..+..
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~---------~~CP~--Cr~~~~~ 72 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKAN---------RTCPI--CRADSGP 72 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHC---------SSCTT--TCCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcC---------CcCcC--cCCcCCC
Confidence 345678999999985433 4567999999999999998631 36995 9887764
No 44
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.70 E-value=1.4e-08 Score=63.92 Aligned_cols=66 Identities=14% Similarity=-0.012 Sum_probs=48.1
Q ss_pred CCCccccccccccCCCCCcccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCccccccccHHHHhcccCChHHHHHHH
Q psy7604 30 TSSKSKCEICFTNMPSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGTVMRLVRDPKVKLKYQ 109 (118)
Q Consensus 30 ~~~~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~~~~i~~ll~~~~~~~ky~ 109 (118)
....+.|+||++-+ .+++.+.|||.||+.|+..|+.. ...||. |+..++..+ ++.+..+...-+
T Consensus 26 ~p~~~~CpI~~~~m--~dPV~~~cGhtf~r~~I~~~l~~---------~~~cP~--~~~~l~~~~---L~pn~~Lk~~I~ 89 (100)
T 2kre_A 26 APDEFRDPLMDTLM--TDPVRLPSGTIMDRSIILRHLLN---------SPTDPF--NRQTLTESM---LEPVPELKEQIQ 89 (100)
T ss_dssp CSTTTBCTTTCSBC--SSEEEETTTEEEEHHHHHHHTTS---------CSBCSS--SCCBCCTTS---SEECHHHHHHHH
T ss_pred CcHhhCCcCccCcc--cCCeECCCCCEEchHHHHHHHHc---------CCCCCC--CCCCCChhh---ceECHHHHHHHH
Confidence 35689999999987 67888889999999999999862 147995 888887653 333434444443
Q ss_pred HH
Q psy7604 110 HL 111 (118)
Q Consensus 110 ~~ 111 (118)
.+
T Consensus 90 ~~ 91 (100)
T 2kre_A 90 AW 91 (100)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 45
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.70 E-value=1.7e-09 Score=63.28 Aligned_cols=51 Identities=22% Similarity=0.597 Sum_probs=39.7
Q ss_pred CCCccccccccccCCCCCcccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCccccccccHHH
Q psy7604 30 TSSKSKCEICFTNMPSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGT 94 (118)
Q Consensus 30 ~~~~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~~~~ 94 (118)
..+...|+||++.+. + +.++|||.||..|+..|+. ....|| .|+..+...+
T Consensus 12 ~~~~~~C~IC~~~~~--~-~~~~CgH~fc~~Ci~~~~~---------~~~~CP--~Cr~~~~~~~ 62 (70)
T 2ecn_A 12 LTDEEECCICMDGRA--D-LILPCAHSFCQKCIDKWSD---------RHRNCP--ICRLQMTGAN 62 (70)
T ss_dssp CCCCCCCSSSCCSCC--S-EEETTTEEECHHHHHHSSC---------CCSSCH--HHHHCTTCCC
T ss_pred CCCCCCCeeCCcCcc--C-cccCCCCcccHHHHHHHHH---------CcCcCC--CcCCcccCCC
Confidence 345789999999974 3 7789999999999998765 135799 5988776543
No 46
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.68 E-value=1.9e-08 Score=64.02 Aligned_cols=55 Identities=18% Similarity=0.465 Sum_probs=39.7
Q ss_pred CccccccccccCCCCC----------------cccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCccccccccH
Q psy7604 32 SKSKCEICFTNMPSTL----------------MTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDD 92 (118)
Q Consensus 32 ~~~~C~IC~~~~~~~~----------------~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~~ 92 (118)
....|+||++.+.... ...+.|||.||..|+..|+...- .. ....||. |+..+..
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~---~~-~~~~CP~--CR~~~~~ 94 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGN---KD-GSLQCPS--CKTIYGE 94 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTC---CS-SCCBCTT--TCCBSSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHccc---CC-CCCcCCC--CCCccCC
Confidence 3468999999974311 12579999999999999996432 11 3578994 9987754
No 47
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.68 E-value=3.8e-08 Score=61.65 Aligned_cols=67 Identities=13% Similarity=-0.052 Sum_probs=49.3
Q ss_pred CCCccccccccccCCCCCcccCCCC-ccchHHHHHHHHHHHhhhcCCceeeecCCccccccccHHHHhcccCChHHHHHH
Q psy7604 30 TSSKSKCEICFTNMPSTLMTGLECS-HRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGTVMRLVRDPKVKLKY 108 (118)
Q Consensus 30 ~~~~~~C~IC~~~~~~~~~~~l~Cg-H~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~~~~i~~ll~~~~~~~ky 108 (118)
..+.+.|+||++-+ .+++.+.|| |.||+.|+..|+.. ...||. |+..++..+ |+.+..+...-
T Consensus 19 ~p~~~~CpI~~~~m--~dPV~~~cG~htf~r~cI~~~l~~---------~~~cP~--~~~~l~~~~---L~pn~~Lk~~I 82 (98)
T 1wgm_A 19 ACDEFLDPIMSTLM--CDPVVLPSSRVTVDRSTIARHLLS---------DQTDPF--NRSPLTMDQ---IRPNTELKEKI 82 (98)
T ss_dssp CCTTTBCTTTCSBC--SSEEECTTTCCEEEHHHHHHHTTT---------SCBCTT--TCSBCCTTT---SEECHHHHHHH
T ss_pred CcHhcCCcCccccc--cCCeECCCCCeEECHHHHHHHHHh---------CCCCCC--CCCCCChhh---ceEcHHHHHHH
Confidence 35689999999987 678889999 99999999999872 137995 998888654 33344444444
Q ss_pred HHHH
Q psy7604 109 QHLI 112 (118)
Q Consensus 109 ~~~~ 112 (118)
+.++
T Consensus 83 ~~~~ 86 (98)
T 1wgm_A 83 QRWL 86 (98)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 48
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.67 E-value=8.2e-09 Score=63.62 Aligned_cols=51 Identities=24% Similarity=0.527 Sum_probs=39.4
Q ss_pred CCccccccccccCCCCC-cccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCccccccccH
Q psy7604 31 SSKSKCEICFTNMPSTL-MTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDD 92 (118)
Q Consensus 31 ~~~~~C~IC~~~~~~~~-~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~~ 92 (118)
.....|+||++.+...+ ...+.|||.||..|+..|+.. ...||. |+..++.
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~---------~~~CP~--Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK---------SGTCPV--CRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT---------TCBCTT--TCCBSSC
T ss_pred CCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc---------CCcCcC--cCccCCC
Confidence 45678999999985443 556899999999999999852 137994 9987764
No 49
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.67 E-value=1.1e-08 Score=59.36 Aligned_cols=48 Identities=25% Similarity=0.743 Sum_probs=37.9
Q ss_pred CccccccccccCCCCCcccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCcccccccc
Q psy7604 32 SKSKCEICFTNMPSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVD 91 (118)
Q Consensus 32 ~~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~ 91 (118)
....|+||++.+. .....++|||.||..|+..|+.. + ..||. |+..+.
T Consensus 4 ~~~~C~IC~~~~~-~~~~~~~C~H~fc~~Ci~~~~~~-----~----~~CP~--Cr~~~~ 51 (68)
T 1chc_A 4 VAERCPICLEDPS-NYSMALPCLHAFCYVCITRWIRQ-----N----PTCPL--CKVPVE 51 (68)
T ss_dssp CCCCCSSCCSCCC-SCEEETTTTEEESTTHHHHHHHH-----S----CSTTT--TCCCCC
T ss_pred CCCCCeeCCcccc-CCcEecCCCCeeHHHHHHHHHhC-----c----CcCcC--CChhhH
Confidence 4668999999973 23467899999999999999852 1 37995 998876
No 50
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.66 E-value=3.8e-08 Score=70.87 Aligned_cols=85 Identities=13% Similarity=0.065 Sum_probs=56.2
Q ss_pred ChhHHHHHcCcCCCCCCCCCCCCCCccccccccccCCCCCcccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCcccc
Q psy7604 8 DQEQLFAEARVINPLVKNSQPSTSSKSKCEICFTNMPSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCN 87 (118)
Q Consensus 8 ~~~~~~~~~gl~~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~ 87 (118)
+.++++.++.-.. ........+.|+||++-+ .+++.++|||.||+.|+..|+.. .+ ..||. |+
T Consensus 188 ~a~~~f~~a~~~~-----~~~~~~~~~~c~i~~~~~--~dPv~~~~gh~f~~~~i~~~~~~----~~----~~cP~--~~ 250 (281)
T 2c2l_A 188 DMDELFSQVDEKR-----KKRDIPDYLCGKISFELM--REPCITPSGITYDRKDIEEHLQR----VG----HFNPV--TR 250 (281)
T ss_dssp HHHHHHHHSSCTT-----SCCCCCSTTBCTTTCSBC--SSEEECSSCCEEETTHHHHHHHH----TC----SSCTT--TC
T ss_pred HHHHHHHhhhccc-----cCCCCCcccCCcCcCCHh--cCCeECCCCCEECHHHHHHHHHH----CC----CCCcC--CC
Confidence 3455666654211 112334688999999997 67888899999999999999973 22 23994 99
Q ss_pred ccccHHHHhcccCChHHHHHHHHHH
Q psy7604 88 ILVDDGTVMRLVRDPKVKLKYQHLI 112 (118)
Q Consensus 88 ~~i~~~~i~~ll~~~~~~~ky~~~~ 112 (118)
..++...+ +++..+.+.-+.|+
T Consensus 251 ~~~~~~~l---~~n~~l~~~i~~~~ 272 (281)
T 2c2l_A 251 SPLTQEQL---IPNLAMKEVIDAFI 272 (281)
T ss_dssp CCCCGGGC---EECHHHHHHHHHHH
T ss_pred CCCchhcC---cccHHHHHHHHHHH
Confidence 99986543 34444444444443
No 51
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.65 E-value=1.5e-08 Score=68.61 Aligned_cols=48 Identities=31% Similarity=0.706 Sum_probs=37.9
Q ss_pred CccccccccccCCCCCcccC-CCCccchHHHHHHHHHHHhhhcCCceeeecCCcccccccc
Q psy7604 32 SKSKCEICFTNMPSTLMTGL-ECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVD 91 (118)
Q Consensus 32 ~~~~C~IC~~~~~~~~~~~l-~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~ 91 (118)
....|+||++.+ .+.+.+ .|||.||..|+..|+.. + ...||. |+..+.
T Consensus 53 ~~~~C~IC~~~~--~~p~~~~~CgH~fC~~Ci~~~~~~-----~---~~~CP~--Cr~~~~ 101 (165)
T 2ckl_B 53 SELMCPICLDML--KNTMTTKECLHRFCADCIITALRS-----G---NKECPT--CRKKLV 101 (165)
T ss_dssp HHHBCTTTSSBC--SSEEEETTTCCEEEHHHHHHHHHT-----T---CCBCTT--TCCBCC
T ss_pred CCCCCcccChHh--hCcCEeCCCCChhHHHHHHHHHHh-----C---cCCCCC--CCCcCC
Confidence 456899999997 345554 99999999999999872 2 357995 998874
No 52
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.59 E-value=5.8e-09 Score=58.79 Aligned_cols=46 Identities=20% Similarity=0.452 Sum_probs=35.7
Q ss_pred CCccccccccccCCCCCcccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCccccccccH
Q psy7604 31 SSKSKCEICFTNMPSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDD 92 (118)
Q Consensus 31 ~~~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~~ 92 (118)
.+..+|+||++.+ .+.+.+.|||.||..|+.. ....||. |+..+..
T Consensus 4 ~~~~~C~IC~~~~--~~p~~l~CgH~fC~~Ci~~------------~~~~CP~--Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEA--KCPKLLPCLHTLCSGCLEA------------SGMQCPI--CQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSC--BCCSCSTTSCCSBTTTCSS------------SSSSCSS--CCSSSSC
T ss_pred ccCCCceEeCCcc--CCeEEcCCCCcccHHHHcc------------CCCCCCc--CCcEeec
Confidence 3567899999987 4567789999999999755 1368994 9887653
No 53
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.48 E-value=2.9e-07 Score=63.56 Aligned_cols=53 Identities=11% Similarity=-0.058 Sum_probs=43.4
Q ss_pred CCccccccccccCCCCCcccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCccccccccHHHH
Q psy7604 31 SSKSKCEICFTNMPSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGTV 95 (118)
Q Consensus 31 ~~~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~~~~i 95 (118)
...+.||||++-+ .+++.++|||.||+.|+..|+.. .|. .||. |+..++..++
T Consensus 104 p~~f~CPI~~elm--~DPV~~~~Ghtfer~~I~~~l~~----~~~----tcP~--t~~~l~~~~L 156 (179)
T 2f42_A 104 PDYLCGKISFELM--REPCITPSGITYDRKDIEEHLQR----VGH----FDPV--TRSPLTQDQL 156 (179)
T ss_dssp CGGGBCTTTCSBC--SSEEECTTSCEEEHHHHHHHHHH----TCS----BCTT--TCCBCCGGGC
T ss_pred cHhhcccCccccC--CCCeECCCCCEECHHHHHHHHHh----CCC----CCCC--CcCCCChhhC
Confidence 4689999999987 67888899999999999999974 232 5995 8888887643
No 54
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.46 E-value=3.6e-08 Score=63.69 Aligned_cols=58 Identities=26% Similarity=0.643 Sum_probs=44.7
Q ss_pred CCCccccccccccCCC-----CCcccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCccccccccHHHHhcc
Q psy7604 30 TSSKSKCEICFTNMPS-----TLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGTVMRL 98 (118)
Q Consensus 30 ~~~~~~C~IC~~~~~~-----~~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~~~~i~~l 98 (118)
+.+...|+||++.+.. ...+.+.|||.||..|+..|+.. ...|| .|+..+..+.+..+
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~---------~~~CP--~Cr~~~~~~~~~~~ 131 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN---------ANTCP--TCRKKINHKRYHPI 131 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH---------CSBCT--TTCCBCCGGGEEEE
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc---------CCCCC--CCCCcCChhcceee
Confidence 4567889999998732 12266799999999999999863 13799 59999998877654
No 55
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.45 E-value=3.3e-08 Score=58.68 Aligned_cols=44 Identities=23% Similarity=0.550 Sum_probs=35.2
Q ss_pred CccccccccccCCCCCcccCCCCcc-chHHHHHHHHHHHhhhcCCceeeecCCccccccccH
Q psy7604 32 SKSKCEICFTNMPSTLMTGLECSHR-FCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDD 92 (118)
Q Consensus 32 ~~~~C~IC~~~~~~~~~~~l~CgH~-fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~~ 92 (118)
+...|+||++.+ .+.+.++|||. ||..|+..+ ..||. |+..+..
T Consensus 23 ~~~~C~iC~~~~--~~~~~~pCgH~~~C~~C~~~~-------------~~CP~--Cr~~i~~ 67 (74)
T 4ic3_A 23 EEKLCKICMDRN--IAIVFVPCGHLVTCKQCAEAV-------------DKCPM--CYTVITF 67 (74)
T ss_dssp HHTBCTTTSSSB--CCEEEETTCCBCCCHHHHTTC-------------SBCTT--TCCBCSE
T ss_pred cCCCCCCCCCCC--CCEEEcCCCChhHHHHhhhcC-------------ccCCC--cCcCccC
Confidence 457899999986 56777899999 999997644 47994 9887753
No 56
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.38 E-value=7.7e-08 Score=58.02 Aligned_cols=51 Identities=20% Similarity=0.369 Sum_probs=36.3
Q ss_pred CccccccccccCCC-----------CC-ccc-CCCCccchHHHHHHHHHHHhhhcCCceeeecCCccccccccHH
Q psy7604 32 SKSKCEICFTNMPS-----------TL-MTG-LECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDG 93 (118)
Q Consensus 32 ~~~~C~IC~~~~~~-----------~~-~~~-l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~~~ 93 (118)
...+|+||++.+.. ++ ... +.|||.|+..|+.+|+..+ -.||. |+..+...
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~---------~~CP~--CR~~~~~~ 77 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN---------NRCPL--CQQDWVVQ 77 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC---------CBCTT--TCCBCCEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhC---------CCCCC--cCCCcchh
Confidence 45678888887732 22 333 4699999999999998631 27995 99877643
No 57
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.37 E-value=2.1e-07 Score=55.18 Aligned_cols=44 Identities=23% Similarity=0.558 Sum_probs=34.6
Q ss_pred CccccccccccCCCCCcccCCCCcc-chHHHHHHHHHHHhhhcCCceeeecCCccccccccH
Q psy7604 32 SKSKCEICFTNMPSTLMTGLECSHR-FCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDD 92 (118)
Q Consensus 32 ~~~~C~IC~~~~~~~~~~~l~CgH~-fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~~ 92 (118)
+...|+||++.+ .+++.++|||. ||..|+.. ...||. |+..+..
T Consensus 24 ~~~~C~IC~~~~--~~~~~~pCgH~~~C~~C~~~-------------~~~CP~--Cr~~i~~ 68 (75)
T 2ecg_A 24 EEKLCKICMDRN--IAIVFVPCGHLVTCKQCAEA-------------VDKCPM--CYTVITF 68 (75)
T ss_dssp HHHSCSSSCSSC--CCBCCSSSCCCCBCHHHHHH-------------CSBCTT--TCCBCCC
T ss_pred CCCCCCcCCCCC--CCEEEecCCCHHHHHHHhhC-------------CCCCcc--CCceecC
Confidence 456899999986 56777899999 99999831 147994 9987754
No 58
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.28 E-value=4.8e-07 Score=69.11 Aligned_cols=50 Identities=22% Similarity=0.474 Sum_probs=40.2
Q ss_pred ccccccccccCCCCCcccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCccccccccHHH
Q psy7604 33 KSKCEICFTNMPSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGT 94 (118)
Q Consensus 33 ~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~~~~ 94 (118)
...|+||++.. .+++.++|||.||..|+..|+.. + ...|| .|+..+....
T Consensus 332 ~~~C~ICle~~--~~pv~lpCGH~FC~~Ci~~wl~~-----~---~~~CP--~CR~~i~~~~ 381 (389)
T 2y1n_A 332 FQLCKICAEND--KDVKIEPCGHLMCTSCLTSWQES-----E---GQGCP--FCRCEIKGTE 381 (389)
T ss_dssp SSBCTTTSSSB--CCEEEETTCCEECHHHHHHHHHH-----T---CSBCT--TTCCBCCEEE
T ss_pred CCCCCccCcCC--CCeEEeCCCChhhHHHHHHHHhc-----C---CCCCC--CCCCccCCce
Confidence 36899999987 56777899999999999998873 1 24799 5998887643
No 59
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.23 E-value=4.4e-07 Score=52.37 Aligned_cols=48 Identities=17% Similarity=0.334 Sum_probs=36.2
Q ss_pred CCccccccccccCCCCCcccC--CCCcc-chHHHHHHHHHHHhhhcCCceeeecCCcccccccc
Q psy7604 31 SSKSKCEICFTNMPSTLMTGL--ECSHR-FCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVD 91 (118)
Q Consensus 31 ~~~~~C~IC~~~~~~~~~~~l--~CgH~-fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~ 91 (118)
.+...|.||++.. .+.+.+ +|||. ||.+|...+.. .+ -+||. |+..+.
T Consensus 6 ~~~~~C~IC~~~~--~~~~~~~~pCgH~~~C~~C~~~~~~-----~~----~~CPi--CR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRP--KNGCIVHGKTGHLMACFTCAKKLKK-----RN----KPCPV--CRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSC--SCEEEEETTEEEEEECHHHHHHHHH-----TT----CCCTT--TCCCCC
T ss_pred CCcCCCCcCCCCC--CCEEEECCCCCChhhHHHHHHHHHH-----cC----CcCCC--cCcchh
Confidence 4567899999986 344544 99999 89999998764 11 36994 998775
No 60
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.20 E-value=1.2e-06 Score=51.18 Aligned_cols=48 Identities=25% Similarity=0.628 Sum_probs=37.3
Q ss_pred CCCCCccccccccccCCCCCcccCCCCcc-chHHHHHHHHHHHhhhcCCceeeecCCccccccccH
Q psy7604 28 PSTSSKSKCEICFTNMPSTLMTGLECSHR-FCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDD 92 (118)
Q Consensus 28 ~~~~~~~~C~IC~~~~~~~~~~~l~CgH~-fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~~ 92 (118)
....+...|.||++.. .+++.++|||. ||..|... + .+||. |+..+..
T Consensus 10 ~~~~~~~~C~IC~~~~--~~~v~~pCgH~~~C~~C~~~-----~--------~~CP~--CR~~i~~ 58 (68)
T 2ea5_A 10 PSEENSKDCVVCQNGT--VNWVLLPCRHTCLCDGCVKY-----F--------QQCPM--CRQFVQE 58 (68)
T ss_dssp CSCCCSSCCSSSSSSC--CCCEETTTTBCCSCTTHHHH-----C--------SSCTT--TCCCCCC
T ss_pred ccCCCCCCCCCcCcCC--CCEEEECCCChhhhHHHHhc-----C--------CCCCC--CCcchhc
Confidence 3445678899999985 56788999999 99999872 1 37994 9987764
No 61
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.20 E-value=2.3e-06 Score=51.57 Aligned_cols=54 Identities=20% Similarity=0.376 Sum_probs=41.3
Q ss_pred CCCccccccccccCCCCCcccCCCC-----ccchHHHHHHHHHHHhhhcCCceeeecCCccccccccH
Q psy7604 30 TSSKSKCEICFTNMPSTLMTGLECS-----HRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDD 92 (118)
Q Consensus 30 ~~~~~~C~IC~~~~~~~~~~~l~Cg-----H~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~~ 92 (118)
......|.||++++..++...++|+ |.|...|+.+|+..+ + ...||. |+..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~----~---~~~Cpl--Cr~~~~~ 70 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSS----D---TRCCEL--CKYEFIM 70 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHH----C---CSBCSS--SCCBCCC
T ss_pred CCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhC----C---CCCCCC--CCCeeec
Confidence 3456789999998754444457886 999999999999864 2 358995 9987754
No 62
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.19 E-value=5.5e-07 Score=51.77 Aligned_cols=48 Identities=17% Similarity=0.321 Sum_probs=35.3
Q ss_pred CCccccccccccCCCCCccc--CCCCcc-chHHHHHHHHHHHhhhcCCceeeecCCcccccccc
Q psy7604 31 SSKSKCEICFTNMPSTLMTG--LECSHR-FCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVD 91 (118)
Q Consensus 31 ~~~~~C~IC~~~~~~~~~~~--l~CgH~-fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~ 91 (118)
.....|.||++.. .+... ++|||. ||..|...+.. .+ -+||. |+..+.
T Consensus 5 ~~~~~C~IC~~~~--~~~~~~~~pCgH~~~C~~C~~~~~~-----~~----~~CPi--CR~~i~ 55 (63)
T 2vje_B 5 NLLKPCSLCEKRP--RDGNIIHGRTGHLVTCFHCARRLKK-----AG----ASCPI--CKKEIQ 55 (63)
T ss_dssp GGGSBCTTTSSSB--SCEEEEETTEEEEEECHHHHHHHHH-----TT----CBCTT--TCCBCC
T ss_pred CcCCCCcccCCcC--CCeEEEecCCCCHhHHHHHHHHHHH-----hC----CcCCC--cCchhh
Confidence 4567899999985 33333 499998 99999987653 12 37994 998875
No 63
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.13 E-value=3.6e-07 Score=54.91 Aligned_cols=45 Identities=22% Similarity=0.490 Sum_probs=35.3
Q ss_pred CccccccccccCCCCCcccCCCCcc-chHHHHHHHHHHHhhhcCCceeeecCCccccccccHH
Q psy7604 32 SKSKCEICFTNMPSTLMTGLECSHR-FCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDG 93 (118)
Q Consensus 32 ~~~~C~IC~~~~~~~~~~~l~CgH~-fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~~~ 93 (118)
+...|.||++.. .+++.++|||. ||..|...+ ..|| -|+..+...
T Consensus 17 ~~~~C~IC~~~~--~~~v~~pCgH~~~C~~C~~~~-------------~~CP--~Cr~~i~~~ 62 (79)
T 2yho_A 17 EAMLCMVCCEEE--INSTFCPCGHTVCCESCAAQL-------------QSCP--VCRSRVEHV 62 (79)
T ss_dssp HHTBCTTTSSSB--CCEEEETTCBCCBCHHHHTTC-------------SBCT--TTCCBCCEE
T ss_pred CCCEeEEeCccc--CcEEEECCCCHHHHHHHHHhc-------------CcCC--CCCchhhCe
Confidence 356899999986 56778899999 999997632 2899 499887753
No 64
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.05 E-value=3.2e-06 Score=53.57 Aligned_cols=49 Identities=22% Similarity=0.398 Sum_probs=36.8
Q ss_pred CccccccccccCCCC----------------CcccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCcccccccc
Q psy7604 32 SKSKCEICFTNMPST----------------LMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVD 91 (118)
Q Consensus 32 ~~~~C~IC~~~~~~~----------------~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~ 91 (118)
...+|.||++.+... ....+.|+|.|+..|+..|+.. ...|| .|+..+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~---------~~~CP--~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT---------RQVCP--LDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT---------CSBCS--SSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc---------CCcCc--CCCCcce
Confidence 566899999987532 1344799999999999999763 24699 4988754
No 65
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=97.80 E-value=2.8e-06 Score=64.04 Aligned_cols=44 Identities=18% Similarity=0.619 Sum_probs=35.3
Q ss_pred CccccccccccCCCCCcccCCCCcc-chHHHHHHHHHHHhhhcCCceeeecCCccccccccH
Q psy7604 32 SKSKCEICFTNMPSTLMTGLECSHR-FCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDD 92 (118)
Q Consensus 32 ~~~~C~IC~~~~~~~~~~~l~CgH~-fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~~ 92 (118)
+...|+||++.+ .+++.++|||. ||..|+..+ ..||. |+..+..
T Consensus 294 ~~~~C~IC~~~~--~~~v~lpCgH~~fC~~C~~~~-------------~~CP~--CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKE--VSVVFIPCGHLVVCQECAPSL-------------RKCPI--CRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSB--CCEEEETTCCEEECTTTGGGC-------------SBCTT--TCCBCCE
T ss_pred CCCCCCccCCcC--CceEEcCCCChhHhHHHHhcC-------------CcCCC--CCCCccC
Confidence 457899999987 56778899999 999997633 47994 9987753
No 66
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.61 E-value=8.9e-06 Score=52.41 Aligned_cols=49 Identities=22% Similarity=0.417 Sum_probs=0.9
Q ss_pred CccccccccccCCCC----------------CcccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCcccccccc
Q psy7604 32 SKSKCEICFTNMPST----------------LMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVD 91 (118)
Q Consensus 32 ~~~~C~IC~~~~~~~----------------~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~ 91 (118)
....|.||++.+... ....+.|+|.|+..|+..|+..+ -.|| -|+..+.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~---------~~CP--~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR---------QVCP--LDNREWE 111 (117)
T ss_dssp CC--------------------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcC---------CcCC--CCCCeee
Confidence 446899999998421 12235899999999999998752 3699 4987654
No 67
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.54 E-value=6.7e-05 Score=56.58 Aligned_cols=61 Identities=16% Similarity=0.339 Sum_probs=43.0
Q ss_pred CCccccccccccCCC-CCcc-----cCCCCccchHHHHHHHHHHHhhhcCCc---eeeecCCccccccccHHH
Q psy7604 31 SSKSKCEICFTNMPS-TLMT-----GLECSHRFCTQCWCEYLTTKIIQEGMG---QTIACAAHGCNILVDDGT 94 (118)
Q Consensus 31 ~~~~~C~IC~~~~~~-~~~~-----~l~CgH~fC~~C~~~y~~~~i~~~g~~---~~i~CP~~~C~~~i~~~~ 94 (118)
....+|+|||+.+.. ..+. ...|||.|...|+..|+.+.-. ..++ ..=.||. |+..|+-++
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~-sRqSFnvi~G~CPy--Cr~pIs~sf 375 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMD-GKTFLEVSFGQCPF--CKAKLSTSF 375 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHS-SSCTTTCCEEECTT--TCCEEEGGG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCC-ccccccccCCCCCC--CCCcCCccH
Confidence 356789999998754 2222 3589999999999999997641 1111 2457994 999988554
No 68
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.50 E-value=6.3e-05 Score=42.86 Aligned_cols=53 Identities=11% Similarity=0.046 Sum_probs=41.1
Q ss_pred ccccccccccCCCCCcccC-CCCccchHHHHHHHHHHHhhhcCCceeeecCCccccccccHHHHhcc
Q psy7604 33 KSKCEICFTNMPSTLMTGL-ECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGTVMRL 98 (118)
Q Consensus 33 ~~~C~IC~~~~~~~~~~~l-~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~~~~i~~l 98 (118)
.+.|+|+++.+ .+.+.. .+||.|++.|+..|+.. +| +||. .+..+..+++..+
T Consensus 3 ~~~CpIs~~~m--~dPV~~~~sG~~yer~~I~~~l~~----~~-----~cP~--t~~~L~~~~Lip~ 56 (61)
T 2bay_A 3 HMLCAISGKVP--RRPVLSPKSRTIFEKSLLEQYVKD----TG-----NDPI--TNEPLSIEEIVEI 56 (61)
T ss_dssp -CCCTTTCSCC--SSEEEETTTTEEEEHHHHHHHHHH----HS-----BCTT--TCCBCCGGGCEEC
T ss_pred eEEecCCCCCC--CCCEEeCCCCcEEcHHHHHHHHHh----CC-----CCcC--CcCCCChhhcEEC
Confidence 47899999987 566666 99999999999999983 23 3995 7777877776554
No 69
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.10 E-value=0.00019 Score=42.55 Aligned_cols=52 Identities=19% Similarity=0.455 Sum_probs=38.2
Q ss_pred CCCccccccccccCCCCCcccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCcccccccc
Q psy7604 30 TSSKSKCEICFTNMPSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVD 91 (118)
Q Consensus 30 ~~~~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~ 91 (118)
......|.||++.+.... .-..|+|.|-..|+..|++++ + .-.||. |+...+
T Consensus 12 ~~~i~~C~IC~~~i~~g~-~C~~C~h~fH~~Ci~kWl~~~----~---~~~CP~--Cr~~w~ 63 (74)
T 2ct0_A 12 PDAVKICNICHSLLIQGQ-SCETCGIRMHLPCVAKYFQSN----A---EPRCPH--CNDYWP 63 (74)
T ss_dssp SSSSCBCSSSCCBCSSSE-ECSSSCCEECHHHHHHHSTTC----S---SCCCTT--TCSCCC
T ss_pred cCCCCcCcchhhHcccCC-ccCCCCchhhHHHHHHHHHhc----C---CCCCCC--CcCcCC
Confidence 345678999999985322 223999999999999999743 1 247995 887654
No 70
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=96.98 E-value=0.00045 Score=42.60 Aligned_cols=32 Identities=19% Similarity=0.556 Sum_probs=25.0
Q ss_pred CccccccccccCCCCCccc--CCCCccchHHHHHH
Q psy7604 32 SKSKCEICFTNMPSTLMTG--LECSHRFCTQCWCE 64 (118)
Q Consensus 32 ~~~~C~IC~~~~~~~~~~~--l~CgH~fC~~C~~~ 64 (118)
++..|+||.+.+. .+.+. +.|+|.||..|+..
T Consensus 2 ee~~C~~C~~~~~-~~av~~C~~C~~~~C~~Cl~~ 35 (101)
T 2jun_A 2 EKVLCQFCDQDPA-QDAVKTCVTCEVSYCDECLKA 35 (101)
T ss_dssp CCCBCTTCCSSSC-CBCCEEETTTTEEECHHHHHH
T ss_pred CCCCCcCCCCCCC-CCceEECCcCChHHhHHHCHH
Confidence 4678999997642 23343 89999999999998
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=96.37 E-value=0.0012 Score=41.13 Aligned_cols=32 Identities=22% Similarity=0.466 Sum_probs=23.9
Q ss_pred ccccccccCCCCC-cccCCCCccchHHHHHHHHHH
Q psy7604 35 KCEICFTNMPSTL-MTGLECSHRFCTQCWCEYLTT 68 (118)
Q Consensus 35 ~C~IC~~~~~~~~-~~~l~CgH~fC~~C~~~y~~~ 68 (118)
.|++|--.+ .. ....+|+|.||.+|...|...
T Consensus 3 fC~~C~~Pi--~iygRmIPCkHvFCydCa~~~~~~ 35 (101)
T 3vk6_A 3 FCDKCGLPI--KVYGRMIPCKHVFCYDCAILHEKK 35 (101)
T ss_dssp BCTTTCSBC--SEEEEEETTCCEEEHHHHHHHHHT
T ss_pred ecCccCCCe--EEEeeeccccccHHHHHHHHHHhc
Confidence 478886554 33 344699999999999998764
No 72
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=96.25 E-value=0.012 Score=35.27 Aligned_cols=69 Identities=20% Similarity=0.459 Sum_probs=47.1
Q ss_pred CCCCccccccccccCCCCCcccC--CCCccchHHHHHHHHHHHhhhcCCceeeecCC-cccccc-------ccHHHHhcc
Q psy7604 29 STSSKSKCEICFTNMPSTLMTGL--ECSHRFCTQCWCEYLTTKIIQEGMGQTIACAA-HGCNIL-------VDDGTVMRL 98 (118)
Q Consensus 29 ~~~~~~~C~IC~~~~~~~~~~~l--~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~-~~C~~~-------i~~~~i~~l 98 (118)
+......|.+|-+-+....++.- .=+|.||..|-+.+|+.+-. + ..+.||. .+|... +-...|..+
T Consensus 11 ~~~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~~--~--~EvyCPSG~kCpL~gS~~PWAFmqgEIatI 86 (93)
T 2cs3_A 11 ANSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGA--T--GEVYCPSGEKCPLVGSNVPWAFMQGEIATI 86 (93)
T ss_dssp CSCCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHS--S--SCCCCTTSSCCBCSSSSSBCCCCHHHHHHH
T ss_pred CCCCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcCC--C--CcEECCCCCccccCCCcCchHHHhhHHHHH
Confidence 45678899999999855555432 33899999999999998753 2 4688986 345432 224556666
Q ss_pred cCC
Q psy7604 99 VRD 101 (118)
Q Consensus 99 l~~ 101 (118)
|.+
T Consensus 87 Lg~ 89 (93)
T 2cs3_A 87 LSG 89 (93)
T ss_dssp HSC
T ss_pred hcc
Confidence 653
No 73
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=96.09 E-value=0.013 Score=32.91 Aligned_cols=50 Identities=20% Similarity=0.462 Sum_probs=35.5
Q ss_pred CCccccccccccCCCCCcccCC--CCc---cchHHHHHHHHHHHhhhcCCceeeecCCcccccccc
Q psy7604 31 SSKSKCEICFTNMPSTLMTGLE--CSH---RFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVD 91 (118)
Q Consensus 31 ~~~~~C~IC~~~~~~~~~~~l~--CgH---~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~ 91 (118)
.+...|.||+++.. .+. .++ |.| .|-.+|+..|+..+ | ...||. |+..+.
T Consensus 4 ~~~~~CrIC~~~~~-~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~----~---~~~C~~--C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELG-NER-FRACGCTGELENVHRSCLSTWLTIS----R---NTACQI--CGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECS-CCC-CCSCCCSSGGGSCCHHHHHHHHHHH----T---CSBCTT--TCCBCC
T ss_pred CCCCEeEEeecCCC-Cce-ecCcCCCCchhhhHHHHHHHHHHhC----C---CCccCC--CCCeee
Confidence 35678999999842 333 355 545 89999999999854 2 368995 887654
No 74
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=92.00 E-value=0.074 Score=30.50 Aligned_cols=33 Identities=24% Similarity=0.583 Sum_probs=25.8
Q ss_pred CCccccccccccCCCCCcccCCC-CccchHHHHHHHH
Q psy7604 31 SSKSKCEICFTNMPSTLMTGLEC-SHRFCTQCWCEYL 66 (118)
Q Consensus 31 ~~~~~C~IC~~~~~~~~~~~l~C-gH~fC~~C~~~y~ 66 (118)
.+..-|.||.++ ..+.-++| |-.||..||++.=
T Consensus 6 ee~pWC~ICneD---AtlrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 6 SGLPWCCICNED---ATLRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp CCCSSCTTTCSC---CCEEETTTTSEEECSSHHHHHT
T ss_pred cCCCeeEEeCCC---CeEEecCCCCceehHHHHHHHc
Confidence 345679999988 33556899 8899999999754
No 75
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=91.39 E-value=0.087 Score=37.45 Aligned_cols=52 Identities=19% Similarity=0.445 Sum_probs=37.8
Q ss_pred CccccccccccCCCCCcccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCccccccccHH
Q psy7604 32 SKSKCEICFTNMPSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDG 93 (118)
Q Consensus 32 ~~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~~~ 93 (118)
....|.||.+-+..+ ..-..|+|.|-..|+..|++.+ ...+|| .|+...+.+
T Consensus 179 ~i~~C~iC~~iv~~g-~~C~~C~~~~H~~C~~~~~~~~-------~~~~CP--~C~~~W~~~ 230 (238)
T 3nw0_A 179 AVKICNICHSLLIQG-QSCETCGIRMHLPCVAKYFQSN-------AEPRCP--HCNDYWPHE 230 (238)
T ss_dssp TCCBCTTTCSBCSSC-EECSSSCCEECHHHHHHHTTTC-------SSCBCT--TTCCBCCSC
T ss_pred CCCcCcchhhHHhCC-cccCccChHHHHHHHHHHHHhC-------CCCCCC--CCCCCCCCC
Confidence 467899999987532 2223599999999999998642 136899 598766543
No 76
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=81.56 E-value=3.9 Score=24.71 Aligned_cols=51 Identities=25% Similarity=0.486 Sum_probs=34.7
Q ss_pred CCccccccccccCCCC---C-ccc-CCCCccchHHHHHHHHHHHhhhcCCceeeecCCcccccccc
Q psy7604 31 SSKSKCEICFTNMPST---L-MTG-LECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVD 91 (118)
Q Consensus 31 ~~~~~C~IC~~~~~~~---~-~~~-l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~ 91 (118)
.....|.||-+++... + ++. -.|+-..|+.|+.- ..+ +|. -.||+ |+....
T Consensus 14 ~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEY----Erk-eG~---q~Cpq--CktrYk 69 (93)
T 1weo_A 14 LDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEY----ERR-EGT---QNCPQ--CKTRYK 69 (93)
T ss_dssp CSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHH----HHH-TSC---SSCTT--TCCCCC
T ss_pred cCCCccccccCccccCCCCCEEEeeeccCChhhHHHHHH----HHh-ccC---ccccc--cCCccc
Confidence 3567899999997432 2 333 37888999999753 333 564 47996 887664
No 77
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=80.44 E-value=0.42 Score=23.74 Aligned_cols=14 Identities=21% Similarity=0.496 Sum_probs=11.4
Q ss_pred CCccccccccccCC
Q psy7604 31 SSKSKCEICFTNMP 44 (118)
Q Consensus 31 ~~~~~C~IC~~~~~ 44 (118)
.+.+.||||+.++.
T Consensus 3 ~EGFiCP~C~~~l~ 16 (34)
T 3mjh_B 3 SEGFICPQCMKSLG 16 (34)
T ss_dssp SEEEECTTTCCEES
T ss_pred CcccCCcHHHHHcC
Confidence 45799999998874
No 78
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=76.36 E-value=2.8 Score=24.63 Aligned_cols=37 Identities=16% Similarity=0.363 Sum_probs=25.6
Q ss_pred CCCCccccccccccCCCCC--cccCCCCccchHHHHHHH
Q psy7604 29 STSSKSKCEICFTNMPSTL--MTGLECSHRFCTQCWCEY 65 (118)
Q Consensus 29 ~~~~~~~C~IC~~~~~~~~--~~~l~CgH~fC~~C~~~y 65 (118)
+..+...|.+|...|.... ----.||+.||..|....
T Consensus 17 pd~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 17 EDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp CTTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred cCCCCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 3445668999999885321 122489999999986543
No 79
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=75.06 E-value=2.5 Score=25.21 Aligned_cols=37 Identities=22% Similarity=0.407 Sum_probs=25.8
Q ss_pred CCCccccccccccCCCCC--cccCCCCccchHHHHHHHH
Q psy7604 30 TSSKSKCEICFTNMPSTL--MTGLECSHRFCTQCWCEYL 66 (118)
Q Consensus 30 ~~~~~~C~IC~~~~~~~~--~~~l~CgH~fC~~C~~~y~ 66 (118)
......|.+|...|.... .---.||+.||..|....+
T Consensus 17 d~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 17 DSEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp GGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred cccCCcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 345668999998875321 2235899999999976543
No 80
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=73.29 E-value=7.9 Score=25.23 Aligned_cols=72 Identities=17% Similarity=0.315 Sum_probs=45.0
Q ss_pred CCccccccccccCCCCCccc-CCCCccchHHHHHHHHH----HHh-hhcCCceeeecCCccccccccHHHHhcccCChHH
Q psy7604 31 SSKSKCEICFTNMPSTLMTG-LECSHRFCTQCWCEYLT----TKI-IQEGMGQTIACAAHGCNILVDDGTVMRLVRDPKV 104 (118)
Q Consensus 31 ~~~~~C~IC~~~~~~~~~~~-l~CgH~fC~~C~~~y~~----~~i-~~~g~~~~i~CP~~~C~~~i~~~~i~~ll~~~~~ 104 (118)
.....|.||.+. .+.+. -.|-..||..|+..-+. ..| ..+|. -.||. |... +...+.+.+. .+
T Consensus 61 g~~d~C~vC~~G---G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~---W~C~~--C~~~-pl~~l~~~c~--~~ 129 (142)
T 2lbm_A 61 GMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQ---WYCYI--CHPE-PLLDLVTACN--SV 129 (142)
T ss_dssp SCBCSCSSSCCC---SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTC---CCCTT--TCCC-TTHHHHHHHH--HH
T ss_pred CCCCeecccCCC---CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCC---CEeec--ccCc-cHHHHHHHHH--HH
Confidence 346689999876 44433 38889999999997763 233 12444 57985 7643 3344444442 46
Q ss_pred HHHHHHHHH
Q psy7604 105 KLKYQHLIT 113 (118)
Q Consensus 105 ~~ky~~~~~ 113 (118)
++++++++.
T Consensus 130 ~~~~~~~~~ 138 (142)
T 2lbm_A 130 FENLEQLLQ 138 (142)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 777777664
No 81
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=73.24 E-value=2.2 Score=26.29 Aligned_cols=19 Identities=21% Similarity=0.637 Sum_probs=15.2
Q ss_pred cchHHHHHHHHHHHhhhcC
Q psy7604 56 RFCTQCWCEYLTTKIIQEG 74 (118)
Q Consensus 56 ~fC~~C~~~y~~~~i~~~g 74 (118)
-||++|+..|+...-.+.|
T Consensus 42 GFCRNCLskWy~~aA~e~G 60 (105)
T 2o35_A 42 GFCRNCLSNWYREAAEASG 60 (105)
T ss_dssp SCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcC
Confidence 4999999999998764344
No 82
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=72.47 E-value=2.2 Score=26.26 Aligned_cols=19 Identities=26% Similarity=0.821 Sum_probs=15.0
Q ss_pred cchHHHHHHHHHHHhhhcC
Q psy7604 56 RFCTQCWCEYLTTKIIQEG 74 (118)
Q Consensus 56 ~fC~~C~~~y~~~~i~~~g 74 (118)
-||++|+..|+...-.+.|
T Consensus 41 GFCRNCLskWy~~aA~~~G 59 (104)
T 3fyb_A 41 DFCRNCLAKWLMEAATEQG 59 (104)
T ss_dssp SCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcC
Confidence 4999999999998764334
No 83
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=71.99 E-value=1.6 Score=27.78 Aligned_cols=35 Identities=20% Similarity=0.544 Sum_probs=24.4
Q ss_pred CCccccccccccCCCCC--cccCCCCccchHHHHHHH
Q psy7604 31 SSKSKCEICFTNMPSTL--MTGLECSHRFCTQCWCEY 65 (118)
Q Consensus 31 ~~~~~C~IC~~~~~~~~--~~~l~CgH~fC~~C~~~y 65 (118)
.....|.+|...|.... .---.||+.||..|....
T Consensus 67 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 67 NEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp GGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 34568999999885321 122489999999986543
No 84
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=69.38 E-value=1.9 Score=25.26 Aligned_cols=34 Identities=21% Similarity=0.582 Sum_probs=23.7
Q ss_pred CCccccccccccCCCCC--cccCCCCccchHHHHHH
Q psy7604 31 SSKSKCEICFTNMPSTL--MTGLECSHRFCTQCWCE 64 (118)
Q Consensus 31 ~~~~~C~IC~~~~~~~~--~~~l~CgH~fC~~C~~~ 64 (118)
.+...|.+|...|.... ----.||+.||..|...
T Consensus 17 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 17 DEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred ccCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 44567999998874321 12248999999998764
No 85
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=69.04 E-value=1.8 Score=27.49 Aligned_cols=37 Identities=27% Similarity=0.601 Sum_probs=22.3
Q ss_pred CCCccccccccccCCCCC--cccCCCCccchHHHHHHHH
Q psy7604 30 TSSKSKCEICFTNMPSTL--MTGLECSHRFCTQCWCEYL 66 (118)
Q Consensus 30 ~~~~~~C~IC~~~~~~~~--~~~l~CgH~fC~~C~~~y~ 66 (118)
......|..|-..|.... ----.||..||..|....+
T Consensus 16 d~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~ 54 (120)
T 1y02_A 16 TGLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVG 54 (120)
T ss_dssp ----CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC--
T ss_pred ccccCcccCcCCccccccccccCCCCCCeeCHHHhCCCC
Confidence 344568999998874311 1224899999999965543
No 86
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=68.82 E-value=1.5 Score=28.43 Aligned_cols=32 Identities=19% Similarity=0.553 Sum_probs=22.8
Q ss_pred CCccccccccccCCC-CC--cccCCCCccchHHHH
Q psy7604 31 SSKSKCEICFTNMPS-TL--MTGLECSHRFCTQCW 62 (118)
Q Consensus 31 ~~~~~C~IC~~~~~~-~~--~~~l~CgH~fC~~C~ 62 (118)
.....|.+|..++.. .. ..-..|.|.+|..|-
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~ 87 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCG 87 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccC
Confidence 356789999999842 12 233589999999874
No 87
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.55 E-value=2.4 Score=24.86 Aligned_cols=34 Identities=18% Similarity=0.508 Sum_probs=23.4
Q ss_pred CCccccccccccCCCCC--cccCCCCccchHHHHHH
Q psy7604 31 SSKSKCEICFTNMPSTL--MTGLECSHRFCTQCWCE 64 (118)
Q Consensus 31 ~~~~~C~IC~~~~~~~~--~~~l~CgH~fC~~C~~~ 64 (118)
.....|.+|...|.... ----.||..||..|-..
T Consensus 12 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 12 NNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 44568999998874321 12248999999999544
No 88
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=65.22 E-value=6.4 Score=27.08 Aligned_cols=33 Identities=24% Similarity=0.490 Sum_probs=23.1
Q ss_pred ccccccccccCCCCC--cccCCCCccchHHHHHHH
Q psy7604 33 KSKCEICFTNMPSTL--MTGLECSHRFCTQCWCEY 65 (118)
Q Consensus 33 ~~~C~IC~~~~~~~~--~~~l~CgH~fC~~C~~~y 65 (118)
...|.+|...|.... .---.||+.||..|-...
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 468999998874321 122489999999986643
No 89
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=65.13 E-value=3.3 Score=28.86 Aligned_cols=33 Identities=21% Similarity=0.583 Sum_probs=23.4
Q ss_pred ccccccccccCCCCC--cccCCCCccchHHHHHHH
Q psy7604 33 KSKCEICFTNMPSTL--MTGLECSHRFCTQCWCEY 65 (118)
Q Consensus 33 ~~~C~IC~~~~~~~~--~~~l~CgH~fC~~C~~~y 65 (118)
...|.+|...|.... .---.||+.||..|-...
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 458999998874321 122489999999997654
No 90
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=62.54 E-value=2.4 Score=28.03 Aligned_cols=31 Identities=26% Similarity=0.557 Sum_probs=23.2
Q ss_pred CccccccccccCCCC---CcccCCCCccchHHHH
Q psy7604 32 SKSKCEICFTNMPST---LMTGLECSHRFCTQCW 62 (118)
Q Consensus 32 ~~~~C~IC~~~~~~~---~~~~l~CgH~fC~~C~ 62 (118)
....|.+|..++..- ...-..|.|.+|..|-
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc
Confidence 578899999986321 2234699999999986
No 91
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=61.79 E-value=4.7 Score=22.34 Aligned_cols=29 Identities=21% Similarity=0.479 Sum_probs=20.5
Q ss_pred cccccccccCCCCC-cccCCCCccchHHHH
Q psy7604 34 SKCEICFTNMPSTL-MTGLECSHRFCTQCW 62 (118)
Q Consensus 34 ~~C~IC~~~~~~~~-~~~l~CgH~fC~~C~ 62 (118)
..|--|...++... ..-..|++.||.+|=
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD 45 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCD 45 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHH
T ss_pred CcccccCcccCCCccEECCccCcCcccchh
Confidence 35888888774332 234689999999994
No 92
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=61.75 E-value=2.8 Score=23.96 Aligned_cols=31 Identities=19% Similarity=0.413 Sum_probs=21.7
Q ss_pred cccccccccCCCCC--cccCCCCccchHHHHHH
Q psy7604 34 SKCEICFTNMPSTL--MTGLECSHRFCTQCWCE 64 (118)
Q Consensus 34 ~~C~IC~~~~~~~~--~~~l~CgH~fC~~C~~~ 64 (118)
..|.+|...|.... ----.||+.||..|...
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 37999998874321 12248999999998753
No 93
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=60.79 E-value=5.2 Score=26.67 Aligned_cols=34 Identities=24% Similarity=0.501 Sum_probs=24.7
Q ss_pred CCccccccccccCCCCCccc---CCCCccchHHHHHHHHH
Q psy7604 31 SSKSKCEICFTNMPSTLMTG---LECSHRFCTQCWCEYLT 67 (118)
Q Consensus 31 ~~~~~C~IC~~~~~~~~~~~---l~CgH~fC~~C~~~y~~ 67 (118)
.....|.||.+. .+++. ..|...||..|+...+.
T Consensus 77 G~~~yC~wC~~G---g~l~~Cdn~~C~r~FC~~CI~~nvG 113 (159)
T 3a1b_A 77 GYQSYCTICCGG---REVLMCGNNNCCRCFCVECVDLLVG 113 (159)
T ss_dssp SSBSSCTTTSCC---SEEEECSSTTTCCEEEHHHHHHHTC
T ss_pred CCcceeeEecCC---CeEEeeCCCCCCCchhHHHHHHhcC
Confidence 456689999865 34443 25889999999997764
No 94
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=57.63 E-value=11 Score=20.68 Aligned_cols=36 Identities=14% Similarity=0.369 Sum_probs=24.8
Q ss_pred CCccccccccccCCCCCcccCCCCccchHHHHHHHHH
Q psy7604 31 SSKSKCEICFTNMPSTLMTGLECSHRFCTQCWCEYLT 67 (118)
Q Consensus 31 ~~~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y~~ 67 (118)
..-+.|..|-..+.....+ ..=+..||..|+.+.+.
T Consensus 31 ~~CF~C~~C~~~L~~~~~~-~~~~~~yC~~cy~~~~~ 66 (72)
T 1x61_A 31 VGCFVCSTCRAQLRGQHFY-AVERRAYCEGCYVATLE 66 (72)
T ss_dssp TTTCBCSSSCCBCTTSCEE-ESSSCEEEHHHHHHHHH
T ss_pred ccCCcccccCCcCCcCcCE-eeCCeEECHHHHHHHHc
Confidence 3468899998887533333 33378999999976553
No 95
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=57.62 E-value=5.8 Score=24.22 Aligned_cols=51 Identities=20% Similarity=0.527 Sum_probs=34.9
Q ss_pred CCCCCccccccccccCCCCCcccCCC-CccchHHHHHHHHHHHhhhcCCceeeecCCccccccccHH
Q psy7604 28 PSTSSKSKCEICFTNMPSTLMTGLEC-SHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDG 93 (118)
Q Consensus 28 ~~~~~~~~C~IC~~~~~~~~~~~l~C-gH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~~~ 93 (118)
.+.-....|-.|+-.. . -...| .|.+|..|++..++. .-+||. |+..++-.
T Consensus 23 ~s~~G~~nCKsCWf~~---k-~LV~C~dHYLCl~CLtlmL~~---------SdrCpI--C~~pLPtk 74 (99)
T 2ko5_A 23 ATHLGPQFCKSCWFEN---K-GLVECNNHYLCLNCLTLLLSV---------SNRCPI--CKMPLPTK 74 (99)
T ss_dssp CCCSCCCCCCSSCSCC---S-SEEECSSCEEEHHHHHHTCSS---------SSEETT--TTEECCCC
T ss_pred ccccCcccChhhcccc---C-CeeeecchhhHHHHHHHHHhh---------ccCCcc--cCCcCCcc
Confidence 3445667899999763 2 22344 799999999876552 237995 99887654
No 96
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=57.46 E-value=17 Score=21.62 Aligned_cols=29 Identities=17% Similarity=0.429 Sum_probs=20.3
Q ss_pred CCccccccccccCCCCCcccCCCCccchH
Q psy7604 31 SSKSKCEICFTNMPSTLMTGLECSHRFCT 59 (118)
Q Consensus 31 ~~~~~C~IC~~~~~~~~~~~l~CgH~fC~ 59 (118)
.....|..|-..+.....+.-.||..||.
T Consensus 23 ~~~~rC~~C~kkvgl~~~f~CrCg~~FC~ 51 (85)
T 1wff_A 23 KIMKHCFLCGKKTGLATSFECRCGNNFCA 51 (85)
T ss_dssp CCCCBCSSSCCBCSSSSCEECTTCCEECT
T ss_pred ccCccchhhCCeecccCCeEcCCCCEecc
Confidence 34568999998764322344479999997
No 97
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=57.22 E-value=18 Score=20.66 Aligned_cols=36 Identities=19% Similarity=0.527 Sum_probs=25.5
Q ss_pred CccccccccccCCC-CCcccCCCCccchHHHHHH-HHH
Q psy7604 32 SKSKCEICFTNMPS-TLMTGLECSHRFCTQCWCE-YLT 67 (118)
Q Consensus 32 ~~~~C~IC~~~~~~-~~~~~l~CgH~fC~~C~~~-y~~ 67 (118)
....|.+|-..-+. ....-+.|.-.||..|++. |..
T Consensus 29 ~~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~~ 66 (78)
T 2ffw_A 29 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPN 66 (78)
T ss_dssp CCCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSCC
T ss_pred CCccCCcCCCCCCCCCeeEccCccchhhhhhhHhhcCC
Confidence 46789999864311 2234589999999999986 644
No 98
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=56.26 E-value=1.9 Score=25.14 Aligned_cols=12 Identities=33% Similarity=0.983 Sum_probs=10.1
Q ss_pred CCCccchHHHHH
Q psy7604 52 ECSHRFCTQCWC 63 (118)
Q Consensus 52 ~CgH~fC~~C~~ 63 (118)
.|||.||..|-.
T Consensus 55 ~C~~~FC~~C~~ 66 (80)
T 2jmo_A 55 GCGFAFCRECKE 66 (80)
T ss_dssp CCSCCEETTTTE
T ss_pred CCCCeeccccCc
Confidence 799999998853
No 99
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=55.99 E-value=2.4 Score=31.85 Aligned_cols=38 Identities=16% Similarity=0.282 Sum_probs=0.0
Q ss_pred CCccccccccccCCCC--CcccCCCCccchHHHHHHHHHH
Q psy7604 31 SSKSKCEICFTNMPST--LMTGLECSHRFCTQCWCEYLTT 68 (118)
Q Consensus 31 ~~~~~C~IC~~~~~~~--~~~~l~CgH~fC~~C~~~y~~~ 68 (118)
.....|.+|...+... ...--.||+.||..|-...+..
T Consensus 373 ~~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~ 412 (434)
T 3mpx_A 373 THVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPL 412 (434)
T ss_dssp ----------------------------------------
T ss_pred ccCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeC
Confidence 3456799999887432 1223489999999999876543
No 100
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=55.91 E-value=4.9 Score=23.88 Aligned_cols=33 Identities=21% Similarity=0.473 Sum_probs=22.5
Q ss_pred CccccccccccCCCCC--cccCCCCccchHHHHHH
Q psy7604 32 SKSKCEICFTNMPSTL--MTGLECSHRFCTQCWCE 64 (118)
Q Consensus 32 ~~~~C~IC~~~~~~~~--~~~l~CgH~fC~~C~~~ 64 (118)
....|.+|...|.... ----.||+.||..|...
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 3457999998874321 12248999999988654
No 101
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=54.75 E-value=11 Score=20.40 Aligned_cols=35 Identities=14% Similarity=0.495 Sum_probs=23.4
Q ss_pred CCccccccccccCCCCCcccCCCCccchHHHHHHHH
Q psy7604 31 SSKSKCEICFTNMPSTLMTGLECSHRFCTQCWCEYL 66 (118)
Q Consensus 31 ~~~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y~ 66 (118)
..-+.|..|-..+....++. .=+..||..|+.+.+
T Consensus 29 ~~CF~C~~C~~~L~~~~~~~-~~~~~yC~~cy~~~f 63 (69)
T 2cur_A 29 ADCFVCVTCSKKLAGQRFTA-VEDQYYCVDCYKNFV 63 (69)
T ss_dssp TTTTBCTTTCCBCTTSCEEE-CSSCEEEHHHHHHHH
T ss_pred cCcCEECCCCCCCCCCccEe-ECCEEECHHHhHHHh
Confidence 34578999988875333333 337889999986543
No 102
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=49.92 E-value=8.6 Score=29.20 Aligned_cols=33 Identities=21% Similarity=0.652 Sum_probs=24.5
Q ss_pred CCccccccccccCCCCCcc---cCCCCccchHHHHHHHH
Q psy7604 31 SSKSKCEICFTNMPSTLMT---GLECSHRFCTQCWCEYL 66 (118)
Q Consensus 31 ~~~~~C~IC~~~~~~~~~~---~l~CgH~fC~~C~~~y~ 66 (118)
.....|.+|.+. .+.+ ...|...||..|+...+
T Consensus 91 G~~~yCr~C~~G---g~l~~Cdn~~C~r~FC~~Ci~~n~ 126 (386)
T 2pv0_B 91 GYQSYCSICCSG---ETLLICGNPDCTRCYCFECVDSLV 126 (386)
T ss_dssp SSBCSCTTTCCC---SSCEECCSTTCCCEECHHHHHHHT
T ss_pred CCcccceEcCCC---CeEEEeCCCCCCcchHHHHHHHhc
Confidence 356688898875 3333 23799999999999887
No 103
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=49.76 E-value=5.2 Score=21.78 Aligned_cols=33 Identities=18% Similarity=0.383 Sum_probs=22.8
Q ss_pred CCccccccccccCCCCCcccCCCCccch-HHHHHH
Q psy7604 31 SSKSKCEICFTNMPSTLMTGLECSHRFC-TQCWCE 64 (118)
Q Consensus 31 ~~~~~C~IC~~~~~~~~~~~l~CgH~fC-~~C~~~ 64 (118)
.+-+.|..|-..+.....+... |..|| .+|.+.
T Consensus 30 ~~CF~C~~C~~~L~~~~f~~~~-g~~yC~~~C~~k 63 (65)
T 2iyb_E 30 TECFLCSCCSKCLIGQKFMPVE-GMVFCSVECKKR 63 (65)
T ss_dssp TTTSBCTTTCCBCTTSCCEEET-TEEESSHHHHHT
T ss_pred CCCEECCCCCCcCCCCceEEEC-CEEecCHHHhhh
Confidence 4568899998887544444334 78899 888764
No 104
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.44 E-value=14 Score=20.03 Aligned_cols=34 Identities=18% Similarity=0.582 Sum_probs=22.5
Q ss_pred CCccccccccccCCCCCcccCCCCccchHHHHHHH
Q psy7604 31 SSKSKCEICFTNMPSTLMTGLECSHRFCTQCWCEY 65 (118)
Q Consensus 31 ~~~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y 65 (118)
..-+.|..|-..+.....+ ..=+..||..|+.+.
T Consensus 29 ~~CF~C~~C~~~L~~~~~~-~~~~~~yC~~cy~~~ 62 (70)
T 2d8z_A 29 KECFVCTACRKQLSGQRFT-ARDDFAYCLNCFCDL 62 (70)
T ss_dssp TTTSBCSSSCCBCTTSCCE-ESSSSEECHHHHHHH
T ss_pred CCCCccCCCCCcCCcCceE-eeCCeEECHHHHHHH
Confidence 3457899998887543333 333678999998543
No 105
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=47.73 E-value=12 Score=20.10 Aligned_cols=34 Identities=9% Similarity=0.172 Sum_probs=22.4
Q ss_pred CCccccccccccCCCCCcccCCCCccchHHHHHHH
Q psy7604 31 SSKSKCEICFTNMPSTLMTGLECSHRFCTQCWCEY 65 (118)
Q Consensus 31 ~~~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y 65 (118)
..-+.|..|-..+.....+ ..=|..||..|+.+.
T Consensus 29 ~~CF~C~~C~~~L~~~~~~-~~~g~~yC~~~y~~~ 62 (66)
T 1nyp_A 29 VEHFVCAKCEKPFLGHRHY-ERKGLAYCETHYNQL 62 (66)
T ss_dssp TTTCBCTTTCCBCSSSCCE-EETTEEECHHHHHHH
T ss_pred cCcCEECCCCCCCCCCceE-eECCcEECHHHHHHH
Confidence 3457888888777543333 334778999988653
No 106
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.15 E-value=34 Score=18.56 Aligned_cols=34 Identities=21% Similarity=0.522 Sum_probs=26.1
Q ss_pred CccccccccccCCCCCcccCCCCccchH-HHHHHHHHH
Q psy7604 32 SKSKCEICFTNMPSTLMTGLECSHRFCT-QCWCEYLTT 68 (118)
Q Consensus 32 ~~~~C~IC~~~~~~~~~~~l~CgH~fC~-~C~~~y~~~ 68 (118)
....|.||.. . ....-..|+-.||. .|++.|-..
T Consensus 11 ~~~~C~vC~~-~--~kY~CPrC~~~yCSl~C~k~Hk~~ 45 (56)
T 2yqq_A 11 STVVCVICLE-K--PKYRCPACRVPYCSVVCFRKHKEQ 45 (56)
T ss_dssp CCCCCTTTCS-C--CSEECTTTCCEESSHHHHHHHHHH
T ss_pred CCCccCcCcC-C--CeeeCCCCCCCeeCHHHHHHHHhh
Confidence 3457999987 2 44566799999997 899988765
No 107
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=43.82 E-value=16 Score=20.27 Aligned_cols=32 Identities=16% Similarity=0.449 Sum_probs=20.7
Q ss_pred CccccccccccCCCCCcccCCCCccchHHHHHH
Q psy7604 32 SKSKCEICFTNMPSTLMTGLECSHRFCTQCWCE 64 (118)
Q Consensus 32 ~~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~ 64 (118)
.-+.|..|-..+.....+ ..=|..||..|+.+
T Consensus 45 ~CF~C~~C~~~L~~~~f~-~~~~~~yC~~cy~~ 76 (77)
T 2egq_A 45 YCFHCKKCSVNLANKRFV-FHQEQVYCPDCAKK 76 (77)
T ss_dssp TTCBCSSSCCBCTTSCCC-EETTEECCHHHHHH
T ss_pred ccCEehhcCCCCCCCccE-eECCEEEChHHhcc
Confidence 457888888777533332 33367889888753
No 108
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.09 E-value=16 Score=19.99 Aligned_cols=33 Identities=15% Similarity=0.266 Sum_probs=21.8
Q ss_pred CCccccccccccCCCCCcccCCCCccchHHHHHH
Q psy7604 31 SSKSKCEICFTNMPSTLMTGLECSHRFCTQCWCE 64 (118)
Q Consensus 31 ~~~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~ 64 (118)
.+-+.|..|-..+.... +...=+..||..|..+
T Consensus 33 ~~CF~C~~C~~~L~~~~-f~~~~g~~yC~~c~~~ 65 (72)
T 1x4l_A 33 NDCFNCKKCSLSLVGRG-FLTERDDILCPDCGKD 65 (72)
T ss_dssp TTTCBCSSSCCBCTTSC-CEECSSSEECHHHHHT
T ss_pred cccCEeccCCCcCCCCc-cEeECCEEEChhHcCc
Confidence 35578888888775333 3334477899988753
No 109
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.03 E-value=18 Score=20.83 Aligned_cols=33 Identities=18% Similarity=0.436 Sum_probs=19.1
Q ss_pred CccccccccccCCCCCcccCCCCccchHHHHHHH
Q psy7604 32 SKSKCEICFTNMPSTLMTGLECSHRFCTQCWCEY 65 (118)
Q Consensus 32 ~~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y 65 (118)
.-+.|..|-..+....+ ...=+..||..|+...
T Consensus 50 ~CF~C~~C~~~L~~~~f-~~~~g~~yC~~cy~~~ 82 (90)
T 2dar_A 50 EEFNCAHCKNTMAYIGF-VEEKGALYCELCYEKF 82 (90)
T ss_dssp TTCBCSSSCCBCSSSCB-EESSSCEECHHHHHHH
T ss_pred cCCccCCCCCCCCCCEe-EeECCEEECHHHHHHH
Confidence 34667777666643222 2333667888887543
No 110
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=42.31 E-value=9.1 Score=20.77 Aligned_cols=33 Identities=21% Similarity=0.567 Sum_probs=21.0
Q ss_pred CCccccccccccCCCCCcccCCCCccchHHHHHH
Q psy7604 31 SSKSKCEICFTNMPSTLMTGLECSHRFCTQCWCE 64 (118)
Q Consensus 31 ~~~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~ 64 (118)
..-+.|..|-..+......... |..||..|+.+
T Consensus 37 ~~CF~C~~C~~~L~~~~~~~~~-g~~yC~~~y~~ 69 (72)
T 3f6q_B 37 EQCFVCAQCFQQFPEGLFYEFE-GRKYCEHDFQM 69 (72)
T ss_dssp TTTSSCTTTCCCCGGGCCEEET-TEEECHHHHHH
T ss_pred cCCCcccCCCCCCCCCCeEeEC-CeEeCHHHHHH
Confidence 3456788887776433333333 77889888765
No 111
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.30 E-value=9.7 Score=21.20 Aligned_cols=35 Identities=17% Similarity=0.121 Sum_probs=22.9
Q ss_pred CCccccccccccCCCCCcccCCCCccchHHHHHHH
Q psy7604 31 SSKSKCEICFTNMPSTLMTGLECSHRFCTQCWCEY 65 (118)
Q Consensus 31 ~~~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y 65 (118)
.+-+.|..|-..+.....+...=+..||..|+...
T Consensus 29 ~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~ 63 (73)
T 1wig_A 29 PSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAA 63 (73)
T ss_dssp TTTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHT
T ss_pred CCcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHh
Confidence 45688999988875233333334678999997543
No 112
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.91 E-value=15 Score=19.99 Aligned_cols=33 Identities=15% Similarity=0.371 Sum_probs=22.2
Q ss_pred CCccccccccccCCCCCcccCCCCccchHHHHHH
Q psy7604 31 SSKSKCEICFTNMPSTLMTGLECSHRFCTQCWCE 64 (118)
Q Consensus 31 ~~~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~ 64 (118)
..-+.|..|-..+.....+ ..=|..||..|+..
T Consensus 31 ~~CF~C~~C~~~L~~~~~~-~~~~~~yC~~cy~~ 63 (72)
T 1wyh_A 31 EHCFLCSGCEQPLGSRSFV-PDKGAHYCVPCYEN 63 (72)
T ss_dssp TTTCBCTTTCCBTTTSCEE-EETTEEEEHHHHHH
T ss_pred cccCeECCCCCcCCCCccC-CcCCeEECHHHHHH
Confidence 3457889998887544333 33467899998854
No 113
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=39.64 E-value=11 Score=20.98 Aligned_cols=20 Identities=25% Similarity=0.629 Sum_probs=13.8
Q ss_pred CCccccccccccCCCCCcccCCCCc
Q psy7604 31 SSKSKCEICFTNMPSTLMTGLECSH 55 (118)
Q Consensus 31 ~~~~~C~IC~~~~~~~~~~~l~CgH 55 (118)
.+..+|+||.... +.-++||
T Consensus 7 ~d~~~C~iC~KTK-----FADG~Gh 26 (62)
T 2a20_A 7 GDAPTCGICHKTK-----FADGCGH 26 (62)
T ss_dssp SCCCCCSSSSCSC-----CCSSCCE
T ss_pred CCcchhhhhccce-----eccCCCc
Confidence 5678999999763 3345566
No 114
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.29 E-value=30 Score=19.14 Aligned_cols=34 Identities=18% Similarity=0.315 Sum_probs=23.0
Q ss_pred CCccccccccccCCCCCcccCCCCccchHHHHHHH
Q psy7604 31 SSKSKCEICFTNMPSTLMTGLECSHRFCTQCWCEY 65 (118)
Q Consensus 31 ~~~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y 65 (118)
..-+.|..|-..+.....+. .=+..||..|+.+.
T Consensus 39 ~~CF~C~~C~~~L~~~~~~~-~~~~~yC~~~y~~~ 72 (80)
T 1x3h_A 39 PECFVCGDCFTSFSTGSFFE-LDGRPFCELHYHHR 72 (80)
T ss_dssp TTTCBCSSSCCBSCSSCCEE-SSSCEECHHHHHHH
T ss_pred cCcCChhhCCCCCCCCcEEe-ECCEEECHHHHHHH
Confidence 35678999988875444333 33778999888553
No 115
>3oj3_I Tumor necrosis factor alpha-induced protein 3; ubiquitin, zinc finger, zinc ION, protein binding-hydrolase; 2.50A {Homo sapiens} PDB: 3oj4_C
Probab=39.25 E-value=18 Score=19.22 Aligned_cols=14 Identities=43% Similarity=1.013 Sum_probs=11.6
Q ss_pred ccchHHHHHHHHHH
Q psy7604 55 HRFCTQCWCEYLTT 68 (118)
Q Consensus 55 H~fC~~C~~~y~~~ 68 (118)
..+|..||+.+.+.
T Consensus 35 ~n~CSkCyre~~en 48 (49)
T 3oj3_I 35 KGFCTLCFIEYREN 48 (49)
T ss_dssp TTBCHHHHHHHHHH
T ss_pred CCcchHHHHHHHHc
Confidence 45999999998874
No 116
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.77 E-value=17 Score=19.77 Aligned_cols=33 Identities=15% Similarity=0.436 Sum_probs=21.9
Q ss_pred CCccccccccccCCCCCcccCCCCccchHHHHHH
Q psy7604 31 SSKSKCEICFTNMPSTLMTGLECSHRFCTQCWCE 64 (118)
Q Consensus 31 ~~~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~ 64 (118)
..-+.|..|-..+.....+ ..=+..||..|+..
T Consensus 31 ~~CF~C~~C~~~L~~~~~~-~~~~~~yC~~cy~~ 63 (72)
T 1x4k_A 31 ETCFICHRCQQPIGTKSFI-PKDNQNFCVPCYEK 63 (72)
T ss_dssp TTTTCCSSSCCCCCSSSEE-EETTEEEEHHHHHH
T ss_pred ccCCcccccCCccCCCccC-ccCCeEECHHHHhH
Confidence 3457888888877544333 23377899998854
No 117
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=38.72 E-value=40 Score=19.42 Aligned_cols=32 Identities=25% Similarity=0.576 Sum_probs=21.5
Q ss_pred CCCCCCccccccccccCCCCCcccCCCCccchH
Q psy7604 27 QPSTSSKSKCEICFTNMPSTLMTGLECSHRFCT 59 (118)
Q Consensus 27 ~~~~~~~~~C~IC~~~~~~~~~~~l~CgH~fC~ 59 (118)
+++......|..|-..+... .+.-.||..||.
T Consensus 19 ~~~k~~~~RC~~C~kkvgL~-~f~CrCg~~FCs 50 (74)
T 1wfp_A 19 DPPKSTATRCLSCNKKVGVT-GFKCRCGSTFCG 50 (74)
T ss_dssp CCTTCCCCBCSSSCCBCTTT-CEECTTSCEECT
T ss_pred ccCcccCccchhhcCccccc-ceEeccCCEecc
Confidence 34455567899998776433 233479999996
No 118
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=38.34 E-value=8.7 Score=21.11 Aligned_cols=33 Identities=21% Similarity=0.612 Sum_probs=21.0
Q ss_pred ccccccccccCCCC----CcccCC--CCccchHHHHHHH
Q psy7604 33 KSKCEICFTNMPST----LMTGLE--CSHRFCTQCWCEY 65 (118)
Q Consensus 33 ~~~C~IC~~~~~~~----~~~~l~--CgH~fC~~C~~~y 65 (118)
...||-|...+... .+.-.. |++.||..|...+
T Consensus 6 ~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~ 44 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPW 44 (60)
T ss_dssp CCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCS
T ss_pred ceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCc
Confidence 45688887666432 233233 8899998887665
No 119
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=37.26 E-value=3.5 Score=28.32 Aligned_cols=33 Identities=15% Similarity=0.332 Sum_probs=23.6
Q ss_pred CCccccccccccCCCCCcccCCCCccchHHHHHH
Q psy7604 31 SSKSKCEICFTNMPSTLMTGLECSHRFCTQCWCE 64 (118)
Q Consensus 31 ~~~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~ 64 (118)
.....|++|-+.+........+ |-..|..|...
T Consensus 170 ~~~~~C~~CGE~~~~~~~~~~~-g~~~C~~C~~~ 202 (204)
T 2gvi_A 170 GAKVRCDVCGEYTYEADAKLLN-GKPVCKPDYYG 202 (204)
T ss_dssp CCEEECTTTCCEEEGGGCEEET-TEEECHHHHHC
T ss_pred CCceECCCCCCchhhcceeeeC-CcEEChhhhcc
Confidence 4578899999998543333344 77899999753
No 120
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.50 E-value=32 Score=19.12 Aligned_cols=38 Identities=16% Similarity=0.329 Sum_probs=25.4
Q ss_pred CCCccccccccccCCCCCcccC-CCCccchHHHHHHHHH
Q psy7604 30 TSSKSKCEICFTNMPSTLMTGL-ECSHRFCTQCWCEYLT 67 (118)
Q Consensus 30 ~~~~~~C~IC~~~~~~~~~~~l-~CgH~fC~~C~~~y~~ 67 (118)
..+-+.|..|-..+.....+.+ .=+..||..|+...+.
T Consensus 38 H~~CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~~~ 76 (81)
T 1x6a_A 38 HPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVS 76 (81)
T ss_dssp CTTSCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHHHC
T ss_pred ccccCCccCCCCccCCCCcEEEeeCCEEECHHHHHHHhc
Confidence 3456789999888743333332 4477899999876554
No 121
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=36.19 E-value=4.7 Score=23.69 Aligned_cols=13 Identities=31% Similarity=0.961 Sum_probs=10.3
Q ss_pred CCCCccchHHHHH
Q psy7604 51 LECSHRFCTQCWC 63 (118)
Q Consensus 51 l~CgH~fC~~C~~ 63 (118)
..|++.||..|-.
T Consensus 47 ~~C~~~FC~~C~~ 59 (86)
T 2ct7_A 47 PQCHQTFCVRCKR 59 (86)
T ss_dssp TTTCCEECSSSCS
T ss_pred CCCCCccccccCC
Confidence 3699999988754
No 122
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.01 E-value=26 Score=19.43 Aligned_cols=34 Identities=21% Similarity=0.439 Sum_probs=22.7
Q ss_pred CCccccccccccCCCCCcccCCCCccchHHHHHHH
Q psy7604 31 SSKSKCEICFTNMPSTLMTGLECSHRFCTQCWCEY 65 (118)
Q Consensus 31 ~~~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y 65 (118)
..-+.|..|-..+.....+ ..=+..||..|+.+.
T Consensus 39 ~~CF~C~~C~~~L~~~~~~-~~~~~~yC~~cy~~~ 72 (80)
T 2cuq_A 39 RECLVCTGCQTPLAGQQFT-SRDEDPYCVACFGEL 72 (80)
T ss_dssp TTTCBCSSSCCBCTTCCEE-ECSSSEEEHHHHHHH
T ss_pred hhhCCcccCCCcCCCCeeE-eECCEEECHHHHHHH
Confidence 3457888888887543333 334778999988643
No 123
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.99 E-value=24 Score=19.10 Aligned_cols=36 Identities=11% Similarity=0.312 Sum_probs=24.5
Q ss_pred CCccccccccccCCCCCcccCCCCccchHHHHHHHHH
Q psy7604 31 SSKSKCEICFTNMPSTLMTGLECSHRFCTQCWCEYLT 67 (118)
Q Consensus 31 ~~~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y~~ 67 (118)
.+-+.|..|-..+.... +...=+..||..|+.+.+.
T Consensus 29 ~~CF~C~~C~~~L~~~~-f~~~~g~~yC~~c~~~~~~ 64 (70)
T 2d8x_A 29 PECFRCDLCQEVLADIG-FVKNAGRHLCRPCHNREKA 64 (70)
T ss_dssp TTTSBCSSSCCBCSSSC-CEEETTEEECHHHHHHHHC
T ss_pred ccCCEeCCCCCcCCCCc-cEeECCeEECHHHhhhhcC
Confidence 34578999988775433 3334578899999876544
No 124
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=35.80 E-value=19 Score=20.68 Aligned_cols=10 Identities=20% Similarity=0.703 Sum_probs=5.5
Q ss_pred cccccccccC
Q psy7604 34 SKCEICFTNM 43 (118)
Q Consensus 34 ~~C~IC~~~~ 43 (118)
..|.-|-..+
T Consensus 26 ~~C~~C~~~I 35 (89)
T 1x64_A 26 PLCDKCGSGI 35 (89)
T ss_dssp CBCTTTCCBC
T ss_pred CCcccCCCEe
Confidence 3466665554
No 125
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=35.74 E-value=44 Score=18.69 Aligned_cols=29 Identities=17% Similarity=0.460 Sum_probs=19.4
Q ss_pred CCCccccccccccCCCCCcccCCCCccchH
Q psy7604 30 TSSKSKCEICFTNMPSTLMTGLECSHRFCT 59 (118)
Q Consensus 30 ~~~~~~C~IC~~~~~~~~~~~l~CgH~fC~ 59 (118)
......|..|-..+... .+.-.||..||.
T Consensus 12 ~~~~~rC~~C~kkvgl~-~f~CrCg~~FC~ 40 (64)
T 1wg2_A 12 VRPNNRCFSCNKKVGVM-GFKCKCGSTFCG 40 (64)
T ss_dssp SCCSCSCTTTCCCCTTS-CEECTTSCEECS
T ss_pred CCcCCcChhhCCccccc-CeEeecCCEecc
Confidence 34456799998875332 233479999996
No 126
>2jx1_A Myelin transcription factor 1; protein-DNA complex, transcription/DNA complex; HET: DNA; NMR {Mus musculus}
Probab=34.53 E-value=13 Score=17.79 Aligned_cols=11 Identities=27% Similarity=0.830 Sum_probs=9.1
Q ss_pred eecCCcccccc
Q psy7604 79 IACAAHGCNIL 89 (118)
Q Consensus 79 i~CP~~~C~~~ 89 (118)
++||.++|...
T Consensus 2 ~~CPtpGC~g~ 12 (31)
T 2jx1_A 2 LKCPTPGCDGS 12 (31)
T ss_dssp CSCSCTTCCSS
T ss_pred CcCCCCCcccc
Confidence 67999999864
No 127
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.52 E-value=21 Score=19.96 Aligned_cols=33 Identities=12% Similarity=0.253 Sum_probs=21.7
Q ss_pred CccccccccccCCCCCcccCCCCccchHHHHHHH
Q psy7604 32 SKSKCEICFTNMPSTLMTGLECSHRFCTQCWCEY 65 (118)
Q Consensus 32 ~~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y 65 (118)
+-+.|..|-..+.....+ ..=+..||..|+.+-
T Consensus 42 ~CF~C~~C~~~L~~~~~~-~~~~~~yC~~cy~~~ 74 (82)
T 1x63_A 42 DCFTCSNCKQVIGTGSFF-PKGEDFYCVTCHETK 74 (82)
T ss_dssp TTCCCSSSCCCCTTSCEE-EETTEEEEHHHHHHH
T ss_pred ccCchhhCCCccCCCccE-eeCCEEECHHHHHHH
Confidence 457788888777544333 334778999888554
No 128
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.86 E-value=37 Score=19.46 Aligned_cols=32 Identities=13% Similarity=0.316 Sum_probs=19.3
Q ss_pred CccccccccccCCCCCcccCCCCccchHHHHHH
Q psy7604 32 SKSKCEICFTNMPSTLMTGLECSHRFCTQCWCE 64 (118)
Q Consensus 32 ~~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~ 64 (118)
.-+.|..|-..+.....+ ..=+..||..|+.+
T Consensus 41 ~CF~C~~C~~~L~~~~~~-~~~g~~yC~~~y~~ 72 (91)
T 2d8y_A 41 SCFRCSYCNNKLSLGTYA-SLHGRIYCKPHFNQ 72 (91)
T ss_dssp TTCBCTTTCCBCCTTTCC-CSSSCCCCHHHHHH
T ss_pred CCCeeCCCCCCCCCCCcE-eECCEEECHHHHHH
Confidence 346777777776443332 23367788888754
No 129
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.79 E-value=17 Score=21.19 Aligned_cols=32 Identities=25% Similarity=0.541 Sum_probs=23.2
Q ss_pred CCCccccccccccCCCC-C--cccCCCCccchHHH
Q psy7604 30 TSSKSKCEICFTNMPST-L--MTGLECSHRFCTQC 61 (118)
Q Consensus 30 ~~~~~~C~IC~~~~~~~-~--~~~l~CgH~fC~~C 61 (118)
......|..|...+..- + .+-..|.|..|+.|
T Consensus 22 ~~~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~C 56 (76)
T 2csz_A 22 HYSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDC 56 (76)
T ss_dssp TCCCCBCSSSCCBCSSSCTTTSEETTTTEECCTTS
T ss_pred CCCccchhhhCccccccccCCCcCcccChhhcccc
Confidence 35677899999998431 1 22358999999987
No 130
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=32.06 E-value=24 Score=26.64 Aligned_cols=55 Identities=22% Similarity=0.444 Sum_probs=37.5
Q ss_pred ccccccccccCCCCCcccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCccccccccHHHH
Q psy7604 33 KSKCEICFTNMPSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGTV 95 (118)
Q Consensus 33 ~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~~~~i 95 (118)
...|||=+..+. .......|.|.-|.+ +..|+...-+ . ..-+||. |...+..+++
T Consensus 249 SL~CPlS~~ri~-~PvRg~~C~HlQCFD-l~sfL~~~~~-~---~~W~CPI--C~k~~~~~dL 303 (371)
T 3i2d_A 249 SLQCPISYTRMK-YPSKSINCKHLQCFD-ALWFLHSQLQ-I---PTWQCPV--CQIDIALENL 303 (371)
T ss_dssp ESBCTTTSSBCS-SEEEETTCCSSCCEE-HHHHHHHHHH-S---CCCBCTT--TCCBCCGGGE
T ss_pred eecCCCcccccc-ccCcCCcCCCcceEC-HHHHHHHhhc-C---CceeCCC--CCcccCHHHe
Confidence 457888776652 244567999997776 4667766542 3 3579996 9988876553
No 131
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=31.64 E-value=61 Score=17.86 Aligned_cols=49 Identities=18% Similarity=0.360 Sum_probs=30.6
Q ss_pred CCccccccccccCCCCCccc-CCCCccchHHHHHHHHHHHhhhcCCceeeecCCcccccc
Q psy7604 31 SSKSKCEICFTNMPSTLMTG-LECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNIL 89 (118)
Q Consensus 31 ~~~~~C~IC~~~~~~~~~~~-l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~ 89 (118)
.....|.||.+. .+++. -.|...|...|+.--+.. + -+|. -.|| .|...
T Consensus 10 ~~~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~-~-P~g~---W~C~--~C~~~ 59 (66)
T 2lri_C 10 APGARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTS-R-PGTG---LRCR--SCSGD 59 (66)
T ss_dssp CTTCCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCC-C-CSSS---CCCT--TTTTC
T ss_pred CCCCCcCCCCCC---CeEEECCCCCCceecccCCCccCc-C-CCCC---EECc--cccCC
Confidence 345679999764 34332 378889999998654432 2 1343 5788 47643
No 132
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=31.64 E-value=29 Score=21.22 Aligned_cols=41 Identities=20% Similarity=0.122 Sum_probs=28.4
Q ss_pred CCCccccccccccCCCCCcccCCCCccchHHHHHHHHHHHh
Q psy7604 30 TSSKSKCEICFTNMPSTLMTGLECSHRFCTQCWCEYLTTKI 70 (118)
Q Consensus 30 ~~~~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y~~~~i 70 (118)
...-+.|..|-..+.....+...=+..||..|+...+..+-
T Consensus 33 H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~~~~ 73 (123)
T 2l3k_A 33 HLECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTKING 73 (123)
T ss_dssp CTTTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHHHHT
T ss_pred ccccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhcccc
Confidence 34568899998887433323333488999999988876653
No 133
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=31.39 E-value=15 Score=17.15 Aligned_cols=13 Identities=31% Similarity=0.529 Sum_probs=10.2
Q ss_pred CccccccccccCC
Q psy7604 32 SKSKCEICFTNMP 44 (118)
Q Consensus 32 ~~~~C~IC~~~~~ 44 (118)
..+.|+||....+
T Consensus 2 ~k~~CpvCk~q~P 14 (28)
T 2jvx_A 2 SDFCCPKCQYQAP 14 (28)
T ss_dssp CCEECTTSSCEES
T ss_pred CcccCccccccCc
Confidence 4678999998764
No 134
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=30.94 E-value=81 Score=19.04 Aligned_cols=48 Identities=15% Similarity=0.322 Sum_probs=29.3
Q ss_pred CccccccccccCC------CCCccc-CCCCccchHHHHH--HHHHHHhhhcCCceeeecCC
Q psy7604 32 SKSKCEICFTNMP------STLMTG-LECSHRFCTQCWC--EYLTTKIIQEGMGQTIACAA 83 (118)
Q Consensus 32 ~~~~C~IC~~~~~------~~~~~~-l~CgH~fC~~C~~--~y~~~~i~~~g~~~~i~CP~ 83 (118)
....|.+|...-. .++++. -.|+..|-..|+. .-+...+. .+. -.||.
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~-~~~---W~C~~ 60 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVK-ALR---WQCIE 60 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHH-TSC---CCCTT
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhh-ccc---ccccc
Confidence 3457999987521 123333 4899999999985 33444554 443 46775
No 135
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=30.41 E-value=37 Score=18.70 Aligned_cols=33 Identities=18% Similarity=0.568 Sum_probs=22.7
Q ss_pred ccccccccccC-CCCCcccCCCCccchH-HHHHHH
Q psy7604 33 KSKCEICFTNM-PSTLMTGLECSHRFCT-QCWCEY 65 (118)
Q Consensus 33 ~~~C~IC~~~~-~~~~~~~l~CgH~fC~-~C~~~y 65 (118)
...|.||.... ......-..|+-.||. .|.+.|
T Consensus 11 ~~~C~vC~~~~~~~akY~CPrC~~rYCSl~C~k~H 45 (59)
T 1x4s_A 11 AGPCGFCPAGEVQPARYTCPRCNAPYCSLRCYRTH 45 (59)
T ss_dssp CEEECSSCTTCCEEECEECTTTCCEESSHHHHHHH
T ss_pred CCcCcCCCCCcCCCccccCcCCCCCccChHHHHHH
Confidence 46899998521 1123455799999997 788865
No 136
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=30.19 E-value=20 Score=16.42 Aligned_cols=21 Identities=10% Similarity=0.371 Sum_probs=16.6
Q ss_pred eeeecCCccccccccHHHHhccc
Q psy7604 77 QTIACAAHGCNILVDDGTVMRLV 99 (118)
Q Consensus 77 ~~i~CP~~~C~~~i~~~~i~~ll 99 (118)
..+.|| -|...++...|...|
T Consensus 5 f~vqcp--vcqq~mpaahin~hl 25 (29)
T 3vhs_A 5 FQVQCP--VCQQMMPAAHINSHL 25 (29)
T ss_dssp CEEECT--TTCCEEEGGGHHHHH
T ss_pred eeeeCh--HHHHhCcHHHHHHHH
Confidence 578999 599999988776554
No 137
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.02 E-value=42 Score=18.65 Aligned_cols=35 Identities=14% Similarity=0.253 Sum_probs=22.2
Q ss_pred CCccccccccccCCCCCcccCCCCccchHHHHHHH
Q psy7604 31 SSKSKCEICFTNMPSTLMTGLECSHRFCTQCWCEY 65 (118)
Q Consensus 31 ~~~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y 65 (118)
..-+.|..|-..+....+....=|..||..|+.+.
T Consensus 39 ~~CF~C~~C~~~L~~~~f~~~~~g~~yC~~cy~~~ 73 (81)
T 2dlo_A 39 PGCFTCVVCHRGLDGIPFTVDATSQIHCIEDFHRK 73 (81)
T ss_dssp TTTCBCSSSCCBCTTSCEECCTTCCCEEHHHHHHH
T ss_pred HHhcCcccCCCccCCCeeEECCCCEEECHHHHHHH
Confidence 34578999988775332222223678999988543
No 138
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.81 E-value=21 Score=19.67 Aligned_cols=31 Identities=19% Similarity=0.468 Sum_probs=17.0
Q ss_pred CccccccccccCCCCCcccCCCCccchHHHHH
Q psy7604 32 SKSKCEICFTNMPSTLMTGLECSHRFCTQCWC 63 (118)
Q Consensus 32 ~~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~ 63 (118)
.-+.|..|-..+.....+ ..=|..||..|+.
T Consensus 38 ~CF~C~~C~~~L~~~~~~-~~~g~~yC~~~y~ 68 (77)
T 1g47_A 38 QCFVCAQCFQQFPEGLFY-EFEGRKYCEHDFQ 68 (77)
T ss_dssp TTCCCTTTCCCCGGGCSE-EETTEEECHHHHH
T ss_pred ccCeECCCCCCCCCCCeE-eECCeEeCHHHHH
Confidence 346677776665332222 2235677777764
No 139
>2yre_A F-box only protein 30; zinc binding, E3 ubiquitin ligase, SCF, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.44 E-value=2.4 Score=26.17 Aligned_cols=41 Identities=17% Similarity=0.253 Sum_probs=24.8
Q ss_pred CCCccchHHHHHHHHHHHhhhcCCceeeecCC--ccccccccHHHHhc
Q psy7604 52 ECSHRFCTQCWCEYLTTKIIQEGMGQTIACAA--HGCNILVDDGTVMR 97 (118)
Q Consensus 52 ~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~--~~C~~~i~~~~i~~ 97 (118)
.||=.|.+.=+..|+..-.+ ..+.|+. +||...+....+.+
T Consensus 43 ~Cga~i~rckL~EH~~~CP~-----a~v~C~~~~yGCp~~~~R~~L~~ 85 (100)
T 2yre_A 43 VCGAVFHSCKADEHRLLCPF-----ERVPCLNSDFGCPFTMARNKVAE 85 (100)
T ss_dssp CCSCEEEHHHHHHHHHHCSS-----SEEECTTTTTTCCCEEESSTHHH
T ss_pred ccCCeeehhhHHHHHhhccc-----ccccccccCcCCceeecHHHHHH
Confidence 45556666556667654331 3577876 67887776655544
No 140
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=29.01 E-value=12 Score=25.23 Aligned_cols=75 Identities=9% Similarity=0.144 Sum_probs=37.7
Q ss_pred ccccccccccCCCCC----ccc-CCCCccchHHHHHHHH--HHHhhhcCCceeeecCCccccccccHHHHhcccCChHHH
Q psy7604 33 KSKCEICFTNMPSTL----MTG-LECSHRFCTQCWCEYL--TTKIIQEGMGQTIACAAHGCNILVDDGTVMRLVRDPKVK 105 (118)
Q Consensus 33 ~~~C~IC~~~~~~~~----~~~-l~CgH~fC~~C~~~y~--~~~i~~~g~~~~i~CP~~~C~~~i~~~~i~~ll~~~~~~ 105 (118)
+..|+||-..+..++ ++. -.|..-|...|..--- ...+.+........|| .|...-+.. ++..+. .++.
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp--~C~~~~~~~-~~~~~~-~el~ 77 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCV--NCTERHPAE-WRLALE-KELQ 77 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCT--TTCCSSSCH-HHHHHH-HHHH
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECc--CCCCCCCHH-HHHHHH-HHHH
Confidence 456999988875543 333 2666556666653211 1122100001257899 598766543 444443 3444
Q ss_pred HHHHHH
Q psy7604 106 LKYQHL 111 (118)
Q Consensus 106 ~ky~~~ 111 (118)
..+++.
T Consensus 78 ~~l~~v 83 (183)
T 3lqh_A 78 ISLKQV 83 (183)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 141
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.58 E-value=21 Score=19.70 Aligned_cols=32 Identities=22% Similarity=0.447 Sum_probs=20.0
Q ss_pred CccccccccccCCCCCcccCCCCccchH-HHHHH
Q psy7604 32 SKSKCEICFTNMPSTLMTGLECSHRFCT-QCWCE 64 (118)
Q Consensus 32 ~~~~C~IC~~~~~~~~~~~l~CgH~fC~-~C~~~ 64 (118)
.-+.|..|-..+.....+.. =+..||. .|+.+
T Consensus 35 ~CF~C~~C~~~L~~~~~~~~-~g~~yC~~~cy~~ 67 (76)
T 2cu8_A 35 FCLKCERCSKTLTPGGHAEH-DGKPFCHKPCYAT 67 (76)
T ss_dssp TTCBCSSSCCBCCTTSCEEE-TTEEECTTTHHHH
T ss_pred CCCCCCCCCCccCCCceEeE-CCEEecchHHHHH
Confidence 45778888877754333322 3677888 68754
No 142
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.65 E-value=28 Score=19.46 Aligned_cols=33 Identities=15% Similarity=0.370 Sum_probs=18.5
Q ss_pred CCccccccccccCCCCCcccCCCCccchHHHHH
Q psy7604 31 SSKSKCEICFTNMPSTLMTGLECSHRFCTQCWC 63 (118)
Q Consensus 31 ~~~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~ 63 (118)
..-+.|..|-..+.....+.+.=+..+|..|+.
T Consensus 39 ~~CF~C~~C~~~L~~~~~~~~~~~~~~C~~C~~ 71 (81)
T 1v6g_A 39 PDCFVCAVCRLPFPPGDRVTFNGKECMCQKCSL 71 (81)
T ss_dssp TTTSSCSSSCCCCCSSSCEEEETTEEEEHHHHS
T ss_pred ccCCccccCCCCCCCCCEEEeCCCCEEChhhhc
Confidence 345677777776643333333323457777763
No 143
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=27.63 E-value=22 Score=19.90 Aligned_cols=34 Identities=21% Similarity=0.528 Sum_probs=22.2
Q ss_pred CCccccccccccCCCCCcccCCCCccchHHHHHHH
Q psy7604 31 SSKSKCEICFTNMPSTLMTGLECSHRFCTQCWCEY 65 (118)
Q Consensus 31 ~~~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y 65 (118)
..-+.|..|-..+.....+ ..=+..||..|+.+.
T Consensus 32 ~~CF~C~~C~~~L~~~~~~-~~~~~~yC~~cy~~~ 65 (81)
T 1a7i_A 32 RCCFLCMVCRKNLDSTTVA-IHDAEVYCKSCYGKK 65 (81)
T ss_dssp SSSEECSSSCCEECSSCCE-EETTEEECSHHHHHH
T ss_pred cccCccCCCCCCCCCCCeE-eeCCEEECHHHHHHH
Confidence 3457888888877544333 333678999988543
No 144
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=27.34 E-value=29 Score=21.22 Aligned_cols=36 Identities=19% Similarity=0.221 Sum_probs=21.9
Q ss_pred CccccccccccCCCCC-cccCCCCccchHHHHHHHHHH
Q psy7604 32 SKSKCEICFTNMPSTL-MTGLECSHRFCTQCWCEYLTT 68 (118)
Q Consensus 32 ~~~~C~IC~~~~~~~~-~~~l~CgH~fC~~C~~~y~~~ 68 (118)
.-+.|..|-..+.... ++... +..||..|+.+.+..
T Consensus 93 ~CF~C~~C~~~L~~g~~f~~~~-~~~~C~~c~~~~~~~ 129 (131)
T 2xjy_A 93 ECFKCAACQKHFCVGDRYLLIN-SDIVCEQDIYEWTKI 129 (131)
T ss_dssp GGCBCTTTCCBCCTTCEEEEET-TEEEEGGGHHHHHHH
T ss_pred cCcccCCCCCCCCCCCEEEEEC-CEEEcHHHHHHHhhc
Confidence 4466777777763222 33333 777888887766553
No 145
>1jjd_A Metallothionein, SMTA; zinc finger, zinc cluster, metal binding PR; NMR {Synechococcus elongatus} SCOP: g.46.1.1
Probab=26.56 E-value=32 Score=18.63 Aligned_cols=31 Identities=19% Similarity=0.451 Sum_probs=20.6
Q ss_pred cccccccccCCCCCcccCCCCccch-HHHHHHH
Q psy7604 34 SKCEICFTNMPSTLMTGLECSHRFC-TQCWCEY 65 (118)
Q Consensus 34 ~~C~IC~~~~~~~~~~~l~CgH~fC-~~C~~~y 65 (118)
=.|+-|.-.++.++.+... |..|| ..|...+
T Consensus 8 CaC~~C~c~Vs~~eai~~d-GK~YCSe~Ca~gH 39 (55)
T 1jjd_A 8 CACEPCLCNVDPSKAIDRN-GLYYCSEACADGH 39 (55)
T ss_dssp CSSTTCCCCBCTTTSEESS-SCEESSHHHHHTS
T ss_pred ecCCCCeeEechHHhhhcC-CeEEehHHHHccC
Confidence 3577787777655655445 77887 7776554
No 146
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.15 E-value=17 Score=20.32 Aligned_cols=12 Identities=25% Similarity=0.526 Sum_probs=6.9
Q ss_pred ccccccccccCC
Q psy7604 33 KSKCEICFTNMP 44 (118)
Q Consensus 33 ~~~C~IC~~~~~ 44 (118)
...|.-|-..+.
T Consensus 15 ~~~C~~C~~~I~ 26 (79)
T 1x62_A 15 LPMCDKCGTGIV 26 (79)
T ss_dssp CCCCSSSCCCCC
T ss_pred CCccccCCCCcc
Confidence 445666666553
No 147
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=25.90 E-value=19 Score=29.60 Aligned_cols=36 Identities=25% Similarity=0.828 Sum_probs=26.8
Q ss_pred ccccccccccCCC--------CCcccCCCCccchHHHHHHHHHH
Q psy7604 33 KSKCEICFTNMPS--------TLMTGLECSHRFCTQCWCEYLTT 68 (118)
Q Consensus 33 ~~~C~IC~~~~~~--------~~~~~l~CgH~fC~~C~~~y~~~ 68 (118)
..+||+|+-.... ...+-+.||-.||.+|+..|.+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~c~~c~~~~~~~ 56 (776)
T 4gut_A 13 TATCPVCFASASERCAKNGYTSRWYHLSCGEHFCNECFDHYYRS 56 (776)
T ss_dssp CCSSCCBSCCCSTTCCTTSCBSCEEEEETTEEEEHHHHHHHHST
T ss_pred cccccHHHHHHHHHHHhCCCCcceeEeccccchhHHHHHHHhcc
Confidence 4579999876531 23456799999999999987765
No 148
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=25.41 E-value=29 Score=21.33 Aligned_cols=33 Identities=18% Similarity=0.277 Sum_probs=22.2
Q ss_pred ccccccccccCCCCCcccCCCCccch----HHHHHHHHH
Q psy7604 33 KSKCEICFTNMPSTLMTGLECSHRFC----TQCWCEYLT 67 (118)
Q Consensus 33 ~~~C~IC~~~~~~~~~~~l~CgH~fC----~~C~~~y~~ 67 (118)
...|..|...- +..+-|.|||.+| ..=...|..
T Consensus 24 ~~~C~~C~~~~--~~W~CL~CG~vgCgr~~~~HA~~H~~ 60 (109)
T 3c5k_A 24 TQPCGDCGTIQ--ENWVCLSCYQVYCGRYINGHMLQHHG 60 (109)
T ss_dssp TCCCTTTCCCS--SEEEETTTCCEEECTTTTCHHHHHHH
T ss_pred CCcCccccCCC--CeeeeeecCccccCCCcChHHHHHhc
Confidence 45699998662 3345689999999 344445544
No 149
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=24.78 E-value=38 Score=25.39 Aligned_cols=55 Identities=16% Similarity=0.317 Sum_probs=37.6
Q ss_pred ccccccccccCCCCCcccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCccccccccHHHH
Q psy7604 33 KSKCEICFTNMPSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGTV 95 (118)
Q Consensus 33 ~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~~~~i 95 (118)
...|||=+..+. .......|.|.-|.+ +..|+...-+ .+ .-+||. |...+..+++
T Consensus 215 SL~CPlS~~ri~-~P~Rg~~C~HlqCFD-l~sfL~~~~~-~~---~W~CPi--C~k~~~~~dL 269 (360)
T 4fo9_A 215 SLMCPLGKMRLT-IPCRAVTCTHLQCFD-AALYLQMNEK-KP---TWICPV--CDKKAAYESL 269 (360)
T ss_dssp ESBCTTTCSBCS-SEEEETTCCCCCCEE-HHHHHHHHHH-SC---CCBCTT--TCSBCCGGGE
T ss_pred eeeCCCccceec-cCCcCCCCCCCccCC-HHHHHHHHhh-CC---CeECCC--CCcccCHHHe
Confidence 456888776652 234567999997776 5677776542 33 579996 9998876654
No 150
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.99 E-value=61 Score=18.25 Aligned_cols=31 Identities=23% Similarity=0.546 Sum_probs=19.9
Q ss_pred CCCCccccccccccCCCCC--cccCCCCccchH
Q psy7604 29 STSSKSKCEICFTNMPSTL--MTGLECSHRFCT 59 (118)
Q Consensus 29 ~~~~~~~C~IC~~~~~~~~--~~~l~CgH~fC~ 59 (118)
.......|..|-..+.... .+.-.||..||.
T Consensus 11 ~~~~~~rC~~C~kk~gL~~~egf~CrCg~~FC~ 43 (67)
T 1x4w_A 11 KQKSRRRCFQCQTKLELVQQELGSCRCGYVFCM 43 (67)
T ss_dssp SCSCTTBCSSSCCBCCHHHHHHHCCSSSCCCCT
T ss_pred CCccCCcchhhCCeecccccCceEecCCCEehh
Confidence 3445668999987753211 134489999996
No 151
>3d00_A Tungsten formylmethanofuran dehydrogenase subunit; FWDE/GAPDH domain-like fold, structural genomics, joint CENT structural genomics; HET: MSE; 1.90A {Syntrophus aciditrophicus}
Probab=23.85 E-value=22 Score=24.05 Aligned_cols=26 Identities=19% Similarity=0.507 Sum_probs=20.2
Q ss_pred CCccccccccccCCCCCcccCCCCccchHHHHH
Q psy7604 31 SSKSKCEICFTNMPSTLMTGLECSHRFCTQCWC 63 (118)
Q Consensus 31 ~~~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~ 63 (118)
.....|++|-+.+... |-..|..|..
T Consensus 161 ~~~~~C~~CGE~~~~~-------g~~~C~~C~~ 186 (191)
T 3d00_A 161 GKIVLCPQCREAYPAQ-------DGELCLSCQG 186 (191)
T ss_dssp CCEEECTTTCCEEEGG-------GCSSCHHHHT
T ss_pred cCCEECCcCCCChhhC-------CCcCCccccC
Confidence 4677899999887322 8899999973
No 152
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=23.27 E-value=71 Score=18.36 Aligned_cols=29 Identities=24% Similarity=0.560 Sum_probs=18.9
Q ss_pred CCCccccccccccCCCCCcccCCCCccchH
Q psy7604 30 TSSKSKCEICFTNMPSTLMTGLECSHRFCT 59 (118)
Q Consensus 30 ~~~~~~C~IC~~~~~~~~~~~l~CgH~fC~ 59 (118)
......|..|-..+... .+.-.||..||.
T Consensus 22 k~~~nRC~~CrKkvgL~-gf~CrCg~~FCs 50 (74)
T 1wfl_A 22 KPKKNRCFMCRKKVGLT-GFDCRCGNLFCG 50 (74)
T ss_dssp CSCTTBCSSSCCBCGGG-CEECTTSCEECS
T ss_pred CCcCCcChhhCCccccc-CeecCCCCEech
Confidence 33456799998765221 233469999996
No 153
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=23.26 E-value=71 Score=17.82 Aligned_cols=29 Identities=21% Similarity=0.520 Sum_probs=19.6
Q ss_pred CCCccccccccccCCCCCcccCCCCccchH
Q psy7604 30 TSSKSKCEICFTNMPSTLMTGLECSHRFCT 59 (118)
Q Consensus 30 ~~~~~~C~IC~~~~~~~~~~~l~CgH~fC~ 59 (118)
......|..|-..+... .+.-.||..||.
T Consensus 12 k~~~~rC~~C~kkvgl~-~f~CrCg~~FC~ 40 (64)
T 1wfh_A 12 PQRPNRCTVCRKRVGLT-GFMCRCGTTFCG 40 (64)
T ss_dssp CSSCCCCTTTCCCCCTT-CEECSSSCEECT
T ss_pred CCcCCcChhhCCccCcc-CEEeecCCEecc
Confidence 34456799998875332 233479999996
No 154
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=22.07 E-value=36 Score=18.68 Aligned_cols=33 Identities=21% Similarity=0.472 Sum_probs=22.1
Q ss_pred CCccccccccccCCCCCcccCCCCccchH-HHHHH
Q psy7604 31 SSKSKCEICFTNMPSTLMTGLECSHRFCT-QCWCE 64 (118)
Q Consensus 31 ~~~~~C~IC~~~~~~~~~~~l~CgH~fC~-~C~~~ 64 (118)
..-+.|..|-..+.....+. .=|..||. .|+.+
T Consensus 25 ~~CF~C~~C~~~L~~~~~~~-~~g~~yC~~~cy~~ 58 (76)
T 1iml_A 25 RPCLKCEKCGKTLTSGGHAE-HEGKPYCNHPCYSA 58 (76)
T ss_dssp TTTCBCTTTCCBCCTTTEEE-ETTEEEETTTHHHH
T ss_pred CCCCCccccCccCCCCceEC-cCCeEeeCHHHHHH
Confidence 34678999988875443333 33788998 68743
No 155
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=21.49 E-value=47 Score=19.19 Aligned_cols=47 Identities=15% Similarity=0.449 Sum_probs=31.4
Q ss_pred CccccccccccCCCCCcccCCCCccchHHHHHHHHHHHhhhcCCceeeecCCccccccccH
Q psy7604 32 SKSKCEICFTNMPSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDD 92 (118)
Q Consensus 32 ~~~~C~IC~~~~~~~~~~~l~CgH~fC~~C~~~y~~~~i~~~g~~~~i~CP~~~C~~~i~~ 92 (118)
.-+.|..|-..+.....+ ..=|..||..|+.+ . ...+|. +|...|.+
T Consensus 32 ~CF~C~~C~~~L~~~~~~-~~~g~~yC~~cy~~-----~------~~~~C~--~C~~~I~~ 78 (101)
T 2cup_A 32 TCFRCAKCLHPLANETFV-AKDNKILCNKCTTR-----E------DSPKCK--GCFKAIVA 78 (101)
T ss_dssp TTCCCSSSCCCTTSSCCE-EETTEEECHHHHTT-----C------CCCBCS--SSCCBCCS
T ss_pred cCCcccccCCCCCcCeeE-CcCCEEEChhHhhh-----h------cCCccc--cCCCcccc
Confidence 457889998887433333 33378899988732 1 245788 69998874
Done!