RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7604
(118 letters)
>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 94
Score = 53.2 bits (127), Expect = 4e-11
Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 5/92 (5%)
Query: 30 TSSKSKCEICFTNMPSTLMTGLE-CSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGC-- 86
+S S C++C P MT + C FCT C +Y+ I+EG+ I+C C
Sbjct: 2 SSGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELL-IKEGLETAISCPDAACPK 60
Query: 87 NILVDDGTVMRLVRDPKVKLKYQHLITNSFVE 118
+ + + +V ++ +Y+ L
Sbjct: 61 QGHLQENEIECMV-AAEIMQRYKKLQFERSGP 91
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine
herpesvirus 1 [TaxId: 10326]}
Length = 68
Score = 28.8 bits (64), Expect = 0.048
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 35 KCEICFTNMPSTLMTGLECSHRFCTQCWCEYLTTK 69
+C IC + + M L C H FC C ++
Sbjct: 7 RCPICLEDPSNYSMA-LPCLHAFCYVCITRWIRQN 40
>d2idaa1 g.44.1.5 (A:1-102) Hypothetical protein RPA1320
{Rhodopseudomonas palustris [TaxId: 1076]}
Length = 102
Score = 28.1 bits (62), Expect = 0.12
Identities = 10/38 (26%), Positives = 12/38 (31%), Gaps = 2/38 (5%)
Query: 23 VKNSQPSTSSKSKCEICFT--NMPSTLMTGLECSHRFC 58
V + T S CE C + L C H C
Sbjct: 8 VAGIRTVTPSALGCEECLKIGSPWVHLRICRTCGHVGC 45
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId:
9606]}
Length = 79
Score = 27.3 bits (60), Expect = 0.18
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 31 SSKSKCEICFTNMPSTLMTGLECSHRFCTQCWCEYLTTK 69
S+ C+IC N + C H CT C + ++
Sbjct: 21 STFQLCKICAENDKDVKI--EPCGHLMCTSCLTSWQESE 57
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein
1 (RAG1), dimerization domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 26.8 bits (59), Expect = 0.32
Identities = 10/35 (28%), Positives = 13/35 (37%), Gaps = 2/35 (5%)
Query: 35 KCEICFTNMPSTLMTGLECSHRFCTQCWCEYLTTK 69
C+IC + + T C H FC C L
Sbjct: 25 SCQICEHILADPVET--SCKHLFCRICILRCLKVM 57
>d1ejxc1 b.92.1.1 (C:1002-1129,C:1423-1475) alpha-Subunit of
urease {Klebsiella aerogenes [TaxId: 28451]}
Length = 181
Score = 26.7 bits (59), Expect = 0.51
Identities = 8/28 (28%), Positives = 18/28 (64%)
Query: 69 KIIQEGMGQTIACAAHGCNILVDDGTVM 96
K+I++GMGQ AA ++++ + ++
Sbjct: 48 KVIRDGMGQGQMLAADCVDLVLTNALIV 75
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 114
Score = 26.5 bits (57), Expect = 0.60
Identities = 7/48 (14%), Positives = 11/48 (22%)
Query: 39 CFTNMPSTLMTGLECSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGC 86
P + +CSH F C + +G
Sbjct: 47 SKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94
>d1vm9a_ b.33.1.1 (A:) Toluene-4-monooxygenase system protein C,
TmoC {Pseudomonas mendocina [TaxId: 300]}
Length = 109
Score = 26.1 bits (57), Expect = 0.65
Identities = 9/55 (16%), Positives = 11/55 (20%), Gaps = 12/55 (21%)
Query: 53 CSHRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGTVMRLVRDPKVKLK 107
C H+ G I C AH G + L
Sbjct: 44 CPHQEILLSEGS---------YEGGVITCRAHLWTFNDGTG---HGINPDDAALA 86
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 97
Score = 25.5 bits (55), Expect = 0.99
Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 35 KCEICFTNMPSTLMTGLECSHRFCTQCWCEYLTTK 69
+C C + + C H FC+ C + + T
Sbjct: 24 RCSRCTNIL-REPVCLGGCEHIFCSNCVSDCIGTG 57
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa)
[TaxId: 4530]}
Length = 55
Score = 24.8 bits (54), Expect = 1.0
Identities = 7/36 (19%), Positives = 12/36 (33%), Gaps = 2/36 (5%)
Query: 36 CEICFTNM--PSTLMTGLECSHRFCTQCWCEYLTTK 69
C +C + C H F +C +L +
Sbjct: 8 CAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSH 43
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 103
Score = 25.4 bits (55), Expect = 1.1
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 35 KCEICFTNMPSTLMTGLECSHRFCTQCWCEYLTTK 69
+C IC + + T +C H FC C + L K
Sbjct: 23 ECPICLELIKEPVST--KCDHIFCKFCMLKLLNQK 55
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia
proto-oncoprotein PML {Human (Homo sapiens) [TaxId:
9606]}
Length = 56
Score = 24.1 bits (52), Expect = 1.9
Identities = 7/26 (26%), Positives = 10/26 (38%), Gaps = 2/26 (7%)
Query: 36 CEICFTNMPSTLMTGLECSHRFCTQC 61
C+ C + L C H C+ C
Sbjct: 9 CQQCQAEAKCPKL--LPCLHTLCSGC 32
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 52
Score = 23.5 bits (50), Expect = 2.6
Identities = 7/36 (19%), Positives = 12/36 (33%), Gaps = 2/36 (5%)
Query: 36 CEICFTNM--PSTLMTGLECSHRFCTQCWCEYLTTK 69
C +C + C ++ C CW T +
Sbjct: 3 CPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDE 38
>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 22.6 bits (48), Expect = 3.4
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 78 TIACAAHGCNILVDDGTVMR 97
TIAC GC + D + MR
Sbjct: 1 TIACPHKGCTKMFRDNSAMR 20
>d4ubpc1 b.92.1.1 (C:1-131,C:435-483) alpha-Subunit of urease
{Bacillus pasteurii [TaxId: 1474]}
Length = 180
Score = 23.9 bits (52), Expect = 5.5
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 7/33 (21%)
Query: 69 KIIQEGMGQ-TIACAAHGC------NILVDDGT 94
K+++EGMG+ N L+ D T
Sbjct: 48 KVLREGMGENGTYTRTENVLDLLLTNALILDYT 80
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens)
[TaxId: 9606]}
Length = 65
Score = 22.8 bits (48), Expect = 5.7
Identities = 9/37 (24%), Positives = 10/37 (27%), Gaps = 3/37 (8%)
Query: 36 CEICFTNM---PSTLMTGLECSHRFCTQCWCEYLTTK 69
C C T PS + C H C C
Sbjct: 6 CPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRG 42
>d1snna_ d.115.1.2 (A:) 3,4-dihydroxy-2-butanone 4-phosphate
synthase, DHBP synthase, RibB {Archaeon
Methanocaldococcus jannaschii [TaxId: 2190]}
Length = 219
Score = 23.8 bits (51), Expect = 6.4
Identities = 5/17 (29%), Positives = 7/17 (41%)
Query: 82 AAHGCNILVDDGTVMRL 98
C ++ DDG M
Sbjct: 179 ITTICEMMGDDGNAMSK 195
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain
{Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8
[TaxId: 37296]}
Length = 60
Score = 22.5 bits (47), Expect = 8.7
Identities = 7/36 (19%), Positives = 8/36 (22%), Gaps = 3/36 (8%)
Query: 36 CEICF---TNMPSTLMTGLECSHRFCTQCWCEYLTT 68
C IC N C +LT
Sbjct: 9 CWICNEELGNERFRACGCTGELENVHRSCLSTWLTI 44
>d1fqta_ b.33.1.1 (A:) Rieske-type ferredoxin associated with
biphenyl dioxygenase {Burkholderia cepacia [TaxId:
292]}
Length = 109
Score = 22.7 bits (48), Expect = 9.7
Identities = 7/43 (16%), Positives = 11/43 (25%)
Query: 55 HRFCTQCWCEYLTTKIIQEGMGQTIACAAHGCNILVDDGTVMR 97
+C + G + C+ H V G V
Sbjct: 37 FATQDRCTHGDWSLSDGGYLEGDVVECSLHMGKFCVRTGKVKS 79
>g1cxp.1 a.93.1.2 (A:,C:) Myeloperoxidase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 570
Score = 23.5 bits (50), Expect = 9.9
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 6 DGDQEQLFAEARVIN 20
D E+L+ EAR I
Sbjct: 262 RWDGERLYQEARKIV 276
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.134 0.418
Gapped
Lambda K H
0.267 0.0517 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 443,672
Number of extensions: 18038
Number of successful extensions: 76
Number of sequences better than 10.0: 1
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 31
Length of query: 118
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 44
Effective length of database: 1,391,576
Effective search space: 61229344
Effective search space used: 61229344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.4 bits)