BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7609
(226 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8VDM6|HNRL1_MOUSE Heterogeneous nuclear ribonucleoprotein U-like protein 1 OS=Mus
musculus GN=Hnrnpul1 PE=1 SV=1
Length = 859
Score = 145 bits (366), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 67/124 (54%), Positives = 93/124 (75%), Gaps = 2/124 (1%)
Query: 21 GSWVQVVDKTTKCLNRLLELGFSRRRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVVVPT 80
G W ++ + T+CLNRL+++ ++RNYILDQTNVY SAQ+RKMR + GFQRKAIV+ PT
Sbjct: 476 GRWDVLIQQATQCLNRLIQIAARKKRNYILDQTNVYGSAQRRKMRPFEGFQRKAIVICPT 535
Query: 81 NEDYLARLEMHREKEGKDDVPPDNVILEMKANFKLPEVGELFEEVTYIELQHPEAEKIID 140
+ED R ++EGKD PD+ +LEMKANF LP+VG+ +EV +IELQ EA+K++
Sbjct: 536 DEDLKDRTVKRTDEEGKDV--PDHAVLEMKANFTLPDVGDFLDEVLFIELQREEADKLVR 593
Query: 141 EYNK 144
+YN+
Sbjct: 594 QYNE 597
>sp|Q9BUJ2|HNRL1_HUMAN Heterogeneous nuclear ribonucleoprotein U-like protein 1 OS=Homo
sapiens GN=HNRNPUL1 PE=1 SV=2
Length = 856
Score = 145 bits (365), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 67/124 (54%), Positives = 93/124 (75%), Gaps = 2/124 (1%)
Query: 21 GSWVQVVDKTTKCLNRLLELGFSRRRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVVVPT 80
G W ++ + T+CLNRL+++ ++RNYILDQTNVY SAQ+RKMR + GFQRKAIV+ PT
Sbjct: 475 GRWDVLIQQATQCLNRLIQIAARKKRNYILDQTNVYGSAQRRKMRPFEGFQRKAIVICPT 534
Query: 81 NEDYLARLEMHREKEGKDDVPPDNVILEMKANFKLPEVGELFEEVTYIELQHPEAEKIID 140
+ED R ++EGKD PD+ +LEMKANF LP+VG+ +EV +IELQ EA+K++
Sbjct: 535 DEDLKDRTIKRTDEEGKDV--PDHAVLEMKANFTLPDVGDFLDEVLFIELQREEADKLVR 592
Query: 141 EYNK 144
+YN+
Sbjct: 593 QYNE 596
>sp|Q00839|HNRPU_HUMAN Heterogeneous nuclear ribonucleoprotein U OS=Homo sapiens GN=HNRNPU
PE=1 SV=6
Length = 825
Score = 128 bits (322), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 58/122 (47%), Positives = 86/122 (70%), Gaps = 2/122 (1%)
Query: 21 GSWVQVVDKTTKCLNRLLELGFSRRRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVVVPT 80
G ++ + +CL + +E+ ++RN+ILDQTNV +AQ+RKM + GFQRKA+VV P
Sbjct: 550 GKLNTLLQRAPQCLGKFIEIAARKKRNFILDQTNVSAAAQRRKMCLFAGFQRKAVVVCPK 609
Query: 81 NEDYLARLEMHREKEGKDDVPPDNVILEMKANFKLPEVGELFEEVTYIELQHPEAEKIID 140
+EDY R + E EGKD P++ +L+MK NF LPEV E F+E+TY+ELQ EA+K+++
Sbjct: 610 DEDYKQRTQKKAEVEGKD--LPEHAVLKMKGNFTLPEVAECFDEITYVELQKEEAQKLLE 667
Query: 141 EY 142
+Y
Sbjct: 668 QY 669
>sp|Q8VEK3|HNRPU_MOUSE Heterogeneous nuclear ribonucleoprotein U OS=Mus musculus GN=Hnrnpu
PE=1 SV=1
Length = 800
Score = 128 bits (321), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 58/122 (47%), Positives = 86/122 (70%), Gaps = 2/122 (1%)
Query: 21 GSWVQVVDKTTKCLNRLLELGFSRRRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVVVPT 80
G ++ + +CL + +E+ ++RN+ILDQTNV +AQ+RKM + GFQRKA+VV P
Sbjct: 526 GKLNTLLQRAPQCLGKFIEIAARKKRNFILDQTNVSAAAQRRKMCLFAGFQRKAVVVCPK 585
Query: 81 NEDYLARLEMHREKEGKDDVPPDNVILEMKANFKLPEVGELFEEVTYIELQHPEAEKIID 140
+EDY R + E EGKD P++ +L+MK NF LPEV E F+E+TY+ELQ EA+K+++
Sbjct: 586 DEDYKQRTQKKAEVEGKD--LPEHAVLKMKGNFTLPEVAECFDEITYVELQKEEAQKLLE 643
Query: 141 EY 142
+Y
Sbjct: 644 QY 645
>sp|Q00PI9|HNRL2_MOUSE Heterogeneous nuclear ribonucleoprotein U-like protein 2 OS=Mus
musculus GN=Hnrnpul2 PE=1 SV=2
Length = 745
Score = 115 bits (287), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 57/121 (47%), Positives = 86/121 (71%), Gaps = 2/121 (1%)
Query: 26 VVDKTTKCLNRLLELGFSRRRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVVVPTNEDYL 85
+V + ++CL++L+++ +RN+ILDQ NVY S Q+RK+ + F RK +VVVP ED+
Sbjct: 509 LVQQASQCLSKLVQIASRSKRNFILDQCNVYNSGQRRKLLLFKTFSRKVVVVVPNEEDWK 568
Query: 86 ARLEMHREKEGKDDVPPDNVILEMKANFKLPEVGELFEEVTYIELQHPEAEKIIDEYNKN 145
RLE+ +E EG DDV P++++LEMKANF LPE + +EVTY EL+ EA+ I+ +Y +
Sbjct: 569 RRLELRKEVEG-DDV-PESIMLEMKANFSLPEKCDYMDEVTYGELEKEEAQPIVTKYKEE 626
Query: 146 A 146
A
Sbjct: 627 A 627
>sp|Q1KMD3|HNRL2_HUMAN Heterogeneous nuclear ribonucleoprotein U-like protein 2 OS=Homo
sapiens GN=HNRNPUL2 PE=1 SV=1
Length = 747
Score = 115 bits (287), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 57/121 (47%), Positives = 86/121 (71%), Gaps = 2/121 (1%)
Query: 26 VVDKTTKCLNRLLELGFSRRRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVVVPTNEDYL 85
+V + ++CL++L+++ +RN+ILDQ NVY S Q+RK+ + F RK +VVVP ED+
Sbjct: 511 LVQQASQCLSKLVQIASRTKRNFILDQCNVYNSGQRRKLLLFKTFSRKVVVVVPNEEDWK 570
Query: 86 ARLEMHREKEGKDDVPPDNVILEMKANFKLPEVGELFEEVTYIELQHPEAEKIIDEYNKN 145
RLE+ +E EG DDV P++++LEMKANF LPE + +EVTY EL+ EA+ I+ +Y +
Sbjct: 571 KRLELRKEVEG-DDV-PESIMLEMKANFSLPEKCDYMDEVTYGELEKEEAQPIVTKYKEE 628
Query: 146 A 146
A
Sbjct: 629 A 629
>sp|Q9HU66|THII_PSEAE tRNA sulfurtransferase OS=Pseudomonas aeruginosa (strain ATCC 15692
/ PAO1 / 1C / PRS 101 / LMG 12228) GN=thiI PE=3 SV=1
Length = 484
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 15/124 (12%)
Query: 24 VQVVDKTTKCLNRLLELGFSRRRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVVVPTNED 83
+ V+D+ T L L L S +++ I + + R M Y G I V PT +
Sbjct: 303 LSVIDRVTDTLV-LRPLIVSHKQDIIDTARQIGTAEFARHMPEYCG----VISVNPTTQA 357
Query: 84 YLARLE----------MHREKEGKDDVPPDNVILEMKANFKLPEVGELFEEVTYIELQHP 133
R+E + R E D VI E+ + ++ EVGE+ I+++HP
Sbjct: 358 KPYRVEHEESKFDMAVLERALERATQRTVDRVIDELGQDLQVEEVGEVLPGQIVIDIRHP 417
Query: 134 EAEK 137
+A++
Sbjct: 418 DAQE 421
>sp|B7V3L1|THII_PSEA8 tRNA sulfurtransferase OS=Pseudomonas aeruginosa (strain LESB58)
GN=thiI PE=3 SV=1
Length = 484
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 15/124 (12%)
Query: 24 VQVVDKTTKCLNRLLELGFSRRRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVVVPTNED 83
+ V+D+ T L L L S +++ I + + R M Y G I V PT +
Sbjct: 303 LSVIDRVTDTLV-LRPLIVSHKQDIIDTARQIGTAEFARHMPEYCG----VISVNPTTQA 357
Query: 84 YLARLE----------MHREKEGKDDVPPDNVILEMKANFKLPEVGELFEEVTYIELQHP 133
R+E + R E D VI E+ + ++ EVGE+ I+++HP
Sbjct: 358 KPYRVEHEESKFDMAVLERALERATQRTVDRVIDELGQDLQVEEVGEVLPGQIVIDIRHP 417
Query: 134 EAEK 137
+A++
Sbjct: 418 DAQE 421
>sp|Q02EP8|THII_PSEAB tRNA sulfurtransferase OS=Pseudomonas aeruginosa (strain
UCBPP-PA14) GN=thiI PE=3 SV=1
Length = 484
Score = 32.3 bits (72), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 15/124 (12%)
Query: 24 VQVVDKTTKCLNRLLELGFSRRRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVVVPTNED 83
+ V+D+ T L L L S +++ I + + R M Y G I V PT +
Sbjct: 303 LSVIDRVTDTLV-LRPLIVSHKQDIIDTARQIGTAEFARHMPEYCG----VISVNPTTQA 357
Query: 84 YLARLE----------MHREKEGKDDVPPDNVILEMKANFKLPEVGELFEEVTYIELQHP 133
R+E + R E D VI E+ + ++ EVGE+ I+++HP
Sbjct: 358 KPYRVEHEESKFDMAVLERALERATQRTVDRVIDELGQDLQVEEVGEVLPGQIVIDIRHP 417
Query: 134 EAEK 137
+A++
Sbjct: 418 DAQE 421
>sp|Q7F0J0|CML13_ORYSJ Probable calcium-binding protein CML13 OS=Oryza sativa subsp.
japonica GN=CML13 PE=2 SV=1
Length = 169
Score = 31.6 bits (70), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 11/80 (13%)
Query: 93 EKEGKDDVPPDNVILEMKANFKLPEVG------ELFEEVTYIELQHPEAEKIIDEYNKNA 146
E++ K+++ I++ N K+ +V EL E TY E+Q +++ E ++N
Sbjct: 95 ERDSKEELTKAFSIIDQDKNGKISDVDIQRIAKELGENFTYQEIQ-----EMVQEADRNG 149
Query: 147 DGTYNYPQNWNAQNWQGYGY 166
DG ++ + GYGY
Sbjct: 150 DGEIDFDEFIRMMRRTGYGY 169
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.133 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,198,383
Number of Sequences: 539616
Number of extensions: 3783975
Number of successful extensions: 9700
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 9670
Number of HSP's gapped (non-prelim): 36
length of query: 226
length of database: 191,569,459
effective HSP length: 113
effective length of query: 113
effective length of database: 130,592,851
effective search space: 14756992163
effective search space used: 14756992163
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)