Query psy7609
Match_columns 226
No_of_seqs 85 out of 87
Neff 3.5
Searched_HMMs 46136
Date Fri Aug 16 22:43:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7609.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7609hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2242|consensus 99.9 4.1E-25 9E-30 214.0 -3.4 155 2-158 282-437 (558)
2 PF13671 AAA_33: AAA domain; P 98.5 1.8E-07 4E-12 71.8 5.8 90 26-116 51-143 (143)
3 TIGR01663 PNK-3'Pase polynucle 98.3 5.2E-06 1.1E-10 81.1 12.1 113 30-144 406-525 (526)
4 TIGR03574 selen_PSTK L-seryl-t 97.2 0.0047 1E-07 53.2 10.9 87 32-124 55-143 (249)
5 cd02021 GntK Gluconate kinase 97.0 0.017 3.6E-07 45.3 11.6 79 43-129 70-149 (150)
6 PHA02530 pseT polynucleotide k 96.0 0.035 7.5E-07 48.4 8.1 78 32-114 62-141 (300)
7 PF06414 Zeta_toxin: Zeta toxi 96.0 0.024 5.3E-07 47.3 6.9 78 28-107 76-161 (199)
8 PRK12339 2-phosphoglycerate ki 94.5 0.44 9.5E-06 41.0 9.9 72 28-104 80-151 (197)
9 COG4639 Predicted kinase [Gene 94.1 0.28 6E-06 42.7 7.8 87 30-122 54-142 (168)
10 TIGR01313 therm_gnt_kin carboh 93.9 1.8 3.9E-05 34.4 11.7 88 43-139 68-157 (163)
11 cd00227 CPT Chloramphenicol (C 93.6 0.39 8.5E-06 39.1 7.6 67 26-92 66-132 (175)
12 TIGR03575 selen_PSTK_euk L-ser 93.0 0.91 2E-05 42.7 9.9 89 34-128 116-207 (340)
13 COG4088 Predicted nucleotide k 92.2 0.69 1.5E-05 42.5 7.8 101 32-140 62-165 (261)
14 PF00625 Guanylate_kin: Guanyl 87.6 1.5 3.3E-05 35.9 5.6 93 38-142 86-179 (183)
15 PRK14737 gmk guanylate kinase; 86.4 5 0.00011 33.9 8.3 91 38-142 87-181 (186)
16 PRK12337 2-phosphoglycerate ki 82.2 11 0.00024 37.5 9.7 67 30-98 344-411 (475)
17 KOG2242|consensus 81.1 0.53 1.1E-05 47.1 0.3 100 46-149 49-152 (558)
18 smart00072 GuKc Guanylate kina 80.6 14 0.0003 30.5 8.4 90 37-140 85-177 (184)
19 PRK06762 hypothetical protein; 77.5 34 0.00073 27.2 10.2 86 36-129 59-147 (166)
20 PF06348 DUF1059: Protein of u 75.4 8.7 0.00019 27.4 5.0 44 69-113 10-54 (57)
21 TIGR03263 guanyl_kin guanylate 74.7 42 0.00091 26.8 9.6 92 36-140 82-175 (180)
22 PLN02772 guanylate kinase 73.2 14 0.00029 36.1 7.3 91 37-140 218-313 (398)
23 PF01591 6PF2K: 6-phosphofruct 72.0 29 0.00063 30.9 8.6 85 28-113 78-168 (222)
24 PF13238 AAA_18: AAA domain; P 71.5 5.1 0.00011 29.5 3.2 47 41-94 69-115 (129)
25 COG0194 Gmk Guanylate kinase [ 62.9 12 0.00027 33.2 4.4 51 37-92 85-136 (191)
26 PRK14738 gmk guanylate kinase; 61.8 90 0.002 26.4 9.3 51 37-92 95-146 (206)
27 PLN03025 replication factor C 61.7 19 0.00042 32.4 5.5 29 79-109 158-186 (319)
28 PF13207 AAA_17: AAA domain; P 60.5 36 0.00079 25.2 6.0 69 23-98 50-118 (121)
29 PRK00300 gmk guanylate kinase; 57.8 86 0.0019 25.7 8.3 97 36-145 86-184 (205)
30 PRK12338 hypothetical protein; 55.5 94 0.002 29.4 9.0 67 27-94 87-153 (319)
31 PRK08356 hypothetical protein; 55.3 1.2E+02 0.0026 25.1 9.9 92 46-143 95-190 (195)
32 PTZ00451 dephospho-CoA kinase; 54.9 37 0.0008 30.5 6.1 70 72-147 138-209 (244)
33 cd02027 APSK Adenosine 5'-phos 53.7 73 0.0016 25.6 7.1 50 41-90 67-116 (149)
34 PF08433 KTI12: Chromatin asso 50.6 68 0.0015 29.1 7.1 97 20-124 50-148 (270)
35 PRK14731 coaE dephospho-CoA ki 47.9 49 0.0011 28.1 5.5 64 73-142 136-199 (208)
36 PF07931 CPT: Chloramphenicol 47.3 79 0.0017 27.0 6.6 67 24-92 62-131 (174)
37 PTZ00322 6-phosphofructo-2-kin 46.2 1.9E+02 0.004 29.4 10.1 79 33-113 282-366 (664)
38 TIGR01128 holA DNA polymerase 45.0 1.2E+02 0.0026 26.1 7.6 77 34-113 64-143 (302)
39 PRK14530 adenylate kinase; Pro 43.3 1.5E+02 0.0032 25.0 7.7 105 34-149 71-181 (215)
40 PRK01184 hypothetical protein; 43.0 1.8E+02 0.0038 23.5 10.0 94 44-142 79-175 (184)
41 TIGR02322 phosphon_PhnN phosph 40.3 1.9E+02 0.0042 23.1 9.3 49 38-91 83-131 (179)
42 PF11181 YflT: Heat induced st 40.0 29 0.00064 26.7 2.7 73 68-142 22-94 (103)
43 PF05236 TAF4: Transcription i 38.3 25 0.00055 31.3 2.4 46 24-69 70-120 (264)
44 PRK11634 ATP-dependent RNA hel 38.0 77 0.0017 32.0 6.0 45 100-144 499-547 (629)
45 PRK14000 potassium-transportin 35.4 44 0.00096 29.6 3.4 57 78-145 95-165 (185)
46 TIGR00152 dephospho-CoA kinase 34.6 2E+02 0.0044 23.5 7.0 62 73-140 126-187 (188)
47 PRK00081 coaE dephospho-CoA ki 34.1 1.3E+02 0.0027 25.3 5.8 83 46-141 107-189 (194)
48 PRK04220 2-phosphoglycerate ki 34.0 2.7E+02 0.0059 26.1 8.5 70 25-95 164-239 (301)
49 KOG0234|consensus 33.5 1.4E+02 0.003 29.8 6.7 87 26-115 92-187 (438)
50 cd02023 UMPK Uridine monophosp 32.6 2.3E+02 0.005 23.2 7.1 67 74-143 122-195 (198)
51 PF03880 DbpA: DbpA RNA bindin 32.4 30 0.00065 25.1 1.6 43 102-144 15-61 (74)
52 PHA01513 mnt Mnt 31.3 98 0.0021 24.2 4.3 41 78-120 10-50 (82)
53 COG4185 Uncharacterized protei 30.9 2.9E+02 0.0062 24.8 7.6 77 29-108 53-132 (187)
54 PRK14732 coaE dephospho-CoA ki 29.6 1.5E+02 0.0032 25.3 5.6 64 73-142 124-187 (196)
55 PF06144 DNA_pol3_delta: DNA p 28.2 74 0.0016 25.1 3.3 73 33-110 77-153 (172)
56 cd02020 CMPK Cytidine monophos 25.8 1.7E+02 0.0037 22.0 4.9 58 45-111 65-122 (147)
57 PF01715 IPPT: IPP transferase 24.9 63 0.0014 28.9 2.6 48 49-96 131-178 (253)
58 KOG0921|consensus 24.7 57 0.0012 35.9 2.6 20 101-120 1124-1143(1282)
59 PHA01547 putative internal vir 24.2 44 0.00096 29.9 1.5 23 162-184 172-194 (206)
60 PRK09825 idnK D-gluconate kina 24.2 4.2E+02 0.0091 22.0 12.3 76 45-131 76-152 (176)
61 cd01428 ADK Adenylate kinase ( 24.1 2.5E+02 0.0055 22.4 5.8 59 34-93 63-127 (194)
62 TIGR01360 aden_kin_iso1 adenyl 24.0 3.7E+02 0.0079 21.3 8.1 54 42-96 79-132 (188)
63 PRK12402 replication factor C 24.0 3.8E+02 0.0083 23.4 7.3 32 79-112 184-215 (337)
64 PRK02496 adk adenylate kinase; 23.2 3.1E+02 0.0067 22.2 6.2 65 45-114 79-146 (184)
65 PLN03134 glycine-rich RNA-bind 23.1 1.3E+02 0.0028 24.6 3.9 22 121-144 77-98 (144)
66 cd02885 IPP_Isomerase Isopente 23.0 46 0.001 27.0 1.3 30 49-78 6-36 (165)
67 PTZ00280 Actin-related protein 22.9 1.7E+02 0.0037 27.4 5.2 60 21-81 79-140 (414)
68 PF14791 DNA_pol_B_thumb: DNA 22.4 73 0.0016 23.2 2.1 44 31-87 8-51 (64)
69 PRK00440 rfc replication facto 20.9 3.2E+02 0.0069 23.6 6.1 29 79-109 161-189 (319)
70 KOG0921|consensus 20.9 87 0.0019 34.6 3.0 25 72-97 1053-1077(1282)
71 KOG3293|consensus 20.3 2.3E+02 0.0051 24.1 4.9 15 123-137 64-78 (134)
72 COG4907 Predicted membrane pro 20.3 66 0.0014 32.8 1.9 11 134-144 524-534 (595)
73 PRK14527 adenylate kinase; Pro 20.2 4.9E+02 0.011 21.3 8.0 50 46-97 84-138 (191)
No 1
>KOG2242|consensus
Probab=99.89 E-value=4.1e-25 Score=213.98 Aligned_cols=155 Identities=35% Similarity=0.441 Sum_probs=150.9
Q ss_pred hhhhhhhhcCCccccccccchhHHHHHHHHHHHHHHHH-hhhcCCCcEEEeccCCChHHHhhhhccccCcceEEEEEeCC
Q psy7609 2 KHEYKLVSINSEPLRDHIKGSWVQVVDKTTKCLNRLLE-LGFSRRRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVVVPT 80 (226)
Q Consensus 2 ~h~~dkMkV~G~~R~~~y~grwd~L~~~a~kcLnrLi~-iAarrrRNYILDQTNVy~sAqRRKM~~F~GFqRKAVVVvPt 80 (226)
-|...+|++.|++...++..+|..+++++..|++.++. |+.++.||||+||||+|+++++|++.+|..|+|+++|++|+
T Consensus 282 ~~~~~~~~~~g~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~~~r~~~~d~~~~s~~~~~r~~~~~~~~~~~~p~~~~~ 361 (558)
T KOG2242|consen 282 NTIMPKMRVVGLEEQTNDAFSRGYLIQQAGQCLNKLPRDIFLRKKRNYILDQTNLSSSAQRRKMGLFSQFSRKAPVVCPA 361 (558)
T ss_pred ccccCCcCcccchhhhhccccccchhhccccccccchhhhhhhhhhhhhhhccccchhhceecccccccccccCCCcCCc
Confidence 36788999999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCCCCCChHHHHHHHhccccCCCCCCCceeeeccCChHHHHHHHHHHHHhcccCCCCCCCCCC
Q psy7609 81 NEDYLARLEMHREKEGKDDVPPDNVILEMKANFKLPEVGELFEEVTYIELQHPEAEKIIDEYNKNADGTYNYPQNWNA 158 (226)
Q Consensus 81 eEe~k~R~~kr~~eeGK~~V~Pe~AvleMKAnFsLP~~~e~fdEV~fvEL~~eeA~klV~kYn~E~r~~~p~~~k~~~ 158 (226)
.++++.|++.|...++++ | |++++.+|+++|++|.+.++.+++.+.+++.+++..+..+|+++++.+.+|..++++
T Consensus 362 ~~d~~s~~~v~~~~~~~d-~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 437 (558)
T KOG2242|consen 362 FEDLKSRTIVRTEVEGKD-V-GETAVLEMNANFTLPGVMDYMDETGDSELLKEEAYGIGDQYSEEARKALPPQKKPND 437 (558)
T ss_pred hhhhccccceEeeeeccc-C-CcceEEEEeeeeccCchhhhhhhccccccchhhcccccccHhHHhhhccCccccccc
Confidence 999999999999999999 9 999999999999999999999999999999999999999999999999999877766
No 2
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=98.53 E-value=1.8e-07 Score=71.79 Aligned_cols=90 Identities=20% Similarity=0.320 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHhhhcCCCcEEEeccCCChHHHhhhhcccc--CcceEEEEEeCChHHHHHHHHHHHHhcCCC-CCCC
Q psy7609 26 VVDKTTKCLNRLLELGFSRRRNYILDQTNVYVSAQKRKMRSYF--GFQRKAIVVVPTNEDYLARLEMHREKEGKD-DVPP 102 (226)
Q Consensus 26 L~~~a~kcLnrLi~iAarrrRNYILDQTNVy~sAqRRKM~~F~--GFqRKAVVVvPteEe~k~R~~kr~~eeGK~-~V~P 102 (226)
+...+-+++...+..+.+...++|||.||++.+.+.+-...+. |+...+|++-+++|++.+|+.+|....++. .+ |
T Consensus 51 ~~~~~~~~~~~~~~~~l~~g~~~vvd~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~~~~~~~~~~-~ 129 (143)
T PF13671_consen 51 AEERAYQILNAAIRKALRNGNSVVVDNTNLSREERARLRELARKHGYPVRVVYLDAPEETLRERLAQRNREGDKRFEV-P 129 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-EEEEESS--SHHHHHHHHHHHHHCTEEEEEEEECHHHHHHHHHHHTTHCCCTTS-----
T ss_pred HHHHHHHHHHHHHHHHHHcCCCceeccCcCCHHHHHHHHHHHHHcCCeEEEEEEECCHHHHHHHHHhcCCcccccccC-c
Confidence 4456677788888888899999999999999977766666664 788889999999999999999999877651 27 9
Q ss_pred hHHHHHHHhccccC
Q psy7609 103 DNVILEMKANFKLP 116 (226)
Q Consensus 103 e~AvleMKAnFsLP 116 (226)
++++..|.+.|..|
T Consensus 130 ~~~~~~~~~~~e~p 143 (143)
T PF13671_consen 130 EEVFDRMLARFEPP 143 (143)
T ss_dssp HHHHHHHHHHHH--
T ss_pred HHHHHHHHHhhccC
Confidence 99999999999887
No 3
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=98.34 E-value=5.2e-06 Score=81.13 Aligned_cols=113 Identities=17% Similarity=0.267 Sum_probs=88.8
Q ss_pred HHHHHHHHHHhhhcCCCcEEEeccCCChHHHhhhhccc--cCcceEEEEEeCChHHHHHHHHHHHHhcCC-CCCCChHHH
Q psy7609 30 TTKCLNRLLELGFSRRRNYILDQTNVYVSAQKRKMRSY--FGFQRKAIVVVPTNEDYLARLEMHREKEGK-DDVPPDNVI 106 (226)
Q Consensus 30 a~kcLnrLi~iAarrrRNYILDQTNVy~sAqRRKM~~F--~GFqRKAVVVvPteEe~k~R~~kr~~eeGK-~~V~Pe~Av 106 (226)
...|+. .+..|.+..++.|||-||.....|++=+..- .|+...+|++-.+.|+.++|...|...+.. ..| |+.++
T Consensus 406 ~~~~~~-~a~~~L~~G~sVVIDaTn~~~~~R~~~i~lAk~~gv~v~~i~~~~p~e~~~~Rn~~R~~~~~s~~~v-p~~v~ 483 (526)
T TIGR01663 406 TQNCLT-ACERALDQGKRCAIDNTNPDAASRAKFLQCARAAGIPCRCFLFNAPLAQAKHNIAFRELSDSAHIKI-KDMVF 483 (526)
T ss_pred HHHHHH-HHHHHHhCCCcEEEECCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHhhccCCcccCCC-CHHHH
Confidence 445554 4566777899999999999998887766544 567788888888999999999999864333 237 89999
Q ss_pred HHHHhccccCCCCCCCceeeeccCC----hHHHHHHHHHHHH
Q psy7609 107 LEMKANFKLPEVGELFEEVTYIELQ----HPEAEKIIDEYNK 144 (226)
Q Consensus 107 leMKAnFsLP~~~e~fdEV~fvEL~----~eeA~klV~kYn~ 144 (226)
..|+..|-.|+..|+|++|.-+... .++.+++-.+|-.
T Consensus 484 ~~~~k~fE~Pt~~EGF~~I~~v~f~~~~~~~~~~~~~~~~~~ 525 (526)
T TIGR01663 484 NGMKKKFEAPALAEGFIAIHEINFKPLFADEKLEKLYCMFLE 525 (526)
T ss_pred HHHHhhCCCCCcccCceEEEEEeCccCcCCHHHHHHHHHHhc
Confidence 9999999999999999998555544 6678888877743
No 4
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.21 E-value=0.0047 Score=53.18 Aligned_cols=87 Identities=20% Similarity=0.251 Sum_probs=64.6
Q ss_pred HHHHHHHHhhhcCCCcEEEeccCCChHHHhhhhcccc--CcceEEEEEeCChHHHHHHHHHHHHhcCCCCCCChHHHHHH
Q psy7609 32 KCLNRLLELGFSRRRNYILDQTNVYVSAQKRKMRSYF--GFQRKAIVVVPTNEDYLARLEMHREKEGKDDVPPDNVILEM 109 (226)
Q Consensus 32 kcLnrLi~iAarrrRNYILDQTNVy~sAqRRKM~~F~--GFqRKAVVVvPteEe~k~R~~kr~~eeGK~~V~Pe~AvleM 109 (226)
..+..++..+..+..+.|+|-+|.|.+.|+.-++... |+....|.+-++.|+..+|..+| |.. + |++.+..|
T Consensus 55 ~~~~~~i~~~l~~~~~VI~D~~~~~~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R----~~~-~-~~~~i~~l 128 (249)
T TIGR03574 55 DSTLYLIKTALKNKYSVIVDDTNYYNSMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIER----GEK-I-PNEVIKDM 128 (249)
T ss_pred HHHHHHHHHHHhCCCeEEEeccchHHHHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhC----CCC-C-CHHHHHHH
Confidence 3445577788888899999999988887665555443 44555566677888888888766 334 7 89999999
Q ss_pred HhccccCCCCCCCce
Q psy7609 110 KANFKLPEVGELFEE 124 (226)
Q Consensus 110 KAnFsLP~~~e~fdE 124 (226)
...|..|......|.
T Consensus 129 ~~r~e~p~~~~~wd~ 143 (249)
T TIGR03574 129 YEKFDEPGTKYSWDL 143 (249)
T ss_pred HHhhCCCCCCCCccC
Confidence 999999987644443
No 5
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.04 E-value=0.017 Score=45.30 Aligned_cols=79 Identities=15% Similarity=0.188 Sum_probs=59.9
Q ss_pred cCCCcEEEeccCCChHHHhhhhcccc-CcceEEEEEeCChHHHHHHHHHHHHhcCCCCCCChHHHHHHHhccccCCCCCC
Q psy7609 43 SRRRNYILDQTNVYVSAQKRKMRSYF-GFQRKAIVVVPTNEDYLARLEMHREKEGKDDVPPDNVILEMKANFKLPEVGEL 121 (226)
Q Consensus 43 rrrRNYILDQTNVy~sAqRRKM~~F~-GFqRKAVVVvPteEe~k~R~~kr~~eeGK~~V~Pe~AvleMKAnFsLP~~~e~ 121 (226)
....+.|||.|+. ....|+.++.+. |..-..|++..+.+++++|+..|. +.. . |.+.+..+.+.|-.|+..+
T Consensus 70 ~~~~~vVid~~~~-~~~~r~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~---~~~-~-~~~~~~~~~~~~~~p~~~~- 142 (150)
T cd02021 70 SAGEGVVVACSAL-KRIYRDILRGGAANPRVRFVHLDGPREVLAERLAARK---GHF-M-PADLLDSQFETLEPPGEDE- 142 (150)
T ss_pred hCCCCEEEEeccc-cHHHHHHHHhcCCCCCEEEEEEECCHHHHHHHHHhcc---cCC-C-CHHHHHHHHHHhcCCCCCC-
Confidence 5677999999985 456667777664 555567788888999999998884 444 5 8899999999999988743
Q ss_pred Cceeeecc
Q psy7609 122 FEEVTYIE 129 (226)
Q Consensus 122 fdEV~fvE 129 (226)
.+|++++
T Consensus 143 -~~~~~~~ 149 (150)
T cd02021 143 -EDVIVID 149 (150)
T ss_pred -CCeEEcc
Confidence 4555543
No 6
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.03 E-value=0.035 Score=48.43 Aligned_cols=78 Identities=17% Similarity=0.181 Sum_probs=55.0
Q ss_pred HHHHHHHHhhhcCCCcEEEeccCCChHHHhhhhcccc--CcceEEEEEeCChHHHHHHHHHHHHhcCCCCCCChHHHHHH
Q psy7609 32 KCLNRLLELGFSRRRNYILDQTNVYVSAQKRKMRSYF--GFQRKAIVVVPTNEDYLARLEMHREKEGKDDVPPDNVILEM 109 (226)
Q Consensus 32 kcLnrLi~iAarrrRNYILDQTNVy~sAqRRKM~~F~--GFqRKAVVVvPteEe~k~R~~kr~~eeGK~~V~Pe~AvleM 109 (226)
..+..++..+.....++|||-||...+.+..-..... ++.-..|.+.++.|++.+|..+| .+.. + |++.|..|
T Consensus 62 ~~~~~~~~~~l~~g~~vIid~~~~~~~~~~~~~~la~~~~~~~~~v~l~~~~e~~~~R~~~R---~~~~-~-~~~~i~~~ 136 (300)
T PHA02530 62 KAQEAAALAALKSGKSVIISDTNLNPERRRKWKELAKELGAEFEEKVFDVPVEELVKRNRKR---GERA-V-PEDVLRSM 136 (300)
T ss_pred HHHHHHHHHHHHcCCeEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHcc---CcCC-C-CHHHHHHH
Confidence 3444555556667899999999987776654322332 45566788888999999999998 3445 8 99998866
Q ss_pred Hhccc
Q psy7609 110 KANFK 114 (226)
Q Consensus 110 KAnFs 114 (226)
-.-+-
T Consensus 137 ~~~~~ 141 (300)
T PHA02530 137 FKQMK 141 (300)
T ss_pred HHHHH
Confidence 55444
No 7
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.01 E-value=0.024 Score=47.31 Aligned_cols=78 Identities=21% Similarity=0.284 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHhhhcCCCcEEEeccCCChHHHhhhhccc--cCcceEEEEEeCChHHHHHHHHHHHHhc------CCCC
Q psy7609 28 DKTTKCLNRLLELGFSRRRNYILDQTNVYVSAQKRKMRSY--FGFQRKAIVVVPTNEDYLARLEMHREKE------GKDD 99 (226)
Q Consensus 28 ~~a~kcLnrLi~iAarrrRNYILDQTNVy~sAqRRKM~~F--~GFqRKAVVVvPteEe~k~R~~kr~~ee------GK~~ 99 (226)
..|.....++++.|...++|+|+|.|---++.-+.-++.| .||+-..++|..++|.-..|..+|.+++ |-.
T Consensus 76 ~~a~~~~~~~~~~a~~~~~nii~E~tl~~~~~~~~~~~~~k~~GY~v~l~~v~~~~e~s~~rv~~R~~~~~~~~g~GR~- 154 (199)
T PF06414_consen 76 KEASRLAEKLIEYAIENRYNIIFEGTLSNPSKLRKLIREAKAAGYKVELYYVAVPPELSIERVRQRYEEGLQAKGIGRF- 154 (199)
T ss_dssp HHHHHHHHHHHHHHHHCT--EEEE--TTSSHHHHHHHHHHHCTT-EEEEEEE---HHHHHHHHHHHHHHHC-C-TT----
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEecCCCChhHHHHHHHHHHcCCceEEEEEEECCHHHHHHHHHHHHHccccccCCCcC-
Confidence 3455567889999999999999999877766666566666 6899777777777888889999999999 877
Q ss_pred CCChHHHH
Q psy7609 100 VPPDNVIL 107 (226)
Q Consensus 100 V~Pe~Avl 107 (226)
| |.+.+.
T Consensus 155 v-~~~~~~ 161 (199)
T PF06414_consen 155 V-PEEKHD 161 (199)
T ss_dssp ---HCCCH
T ss_pred C-CHHHHH
Confidence 8 665443
No 8
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=94.50 E-value=0.44 Score=40.95 Aligned_cols=72 Identities=11% Similarity=0.120 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHhhhcCCCcEEEeccCCChHHHhhhhccccCcceEEEEEeCChHHHHHHHHHHHHhcCCCCCCChH
Q psy7609 28 DKTTKCLNRLLELGFSRRRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVVVPTNEDYLARLEMHREKEGKDDVPPDN 104 (226)
Q Consensus 28 ~~a~kcLnrLi~iAarrrRNYILDQTNVy~sAqRRKM~~F~GFqRKAVVVvPteEe~k~R~~kr~~eeGK~~V~Pe~ 104 (226)
+.....|..+++.+.....+.|||+++..+.-+..+... + ..-..|.+++++++++|+..|....+.. . |.+
T Consensus 80 ~~v~~~L~~va~~~l~~G~sVIvEgv~l~p~~~~~~~~~--~-v~~i~l~v~d~e~lr~Rl~~R~~~~~~~-~-p~~ 151 (197)
T PRK12339 80 RAIMPGINRVIRRALLNGEDLVIESLYFHPPMIDENRTN--N-IRAFYLYIRDAELHRSRLADRINYTHKN-S-PGK 151 (197)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEecCcCHHHHHHHHhc--C-eEEEEEEeCCHHHHHHHHHHHhhcccCC-C-cHH
Confidence 344455788888888999999999988887665433322 2 1234445688999999999999877777 6 766
No 9
>COG4639 Predicted kinase [General function prediction only]
Probab=94.06 E-value=0.28 Score=42.71 Aligned_cols=87 Identities=26% Similarity=0.277 Sum_probs=63.8
Q ss_pred HHHHHHHHHHhhhcCCCcEEEeccCCChHHHhhhhccc--cCcceEEEEEeCChHHHHHHHHHHHHhcCCCCCCChHHHH
Q psy7609 30 TTKCLNRLLELGFSRRRNYILDQTNVYVSAQKRKMRSY--FGFQRKAIVVVPTNEDYLARLEMHREKEGKDDVPPDNVIL 107 (226)
Q Consensus 30 a~kcLnrLi~iAarrrRNYILDQTNVy~sAqRRKM~~F--~GFqRKAVVVvPteEe~k~R~~kr~~eeGK~~V~Pe~Avl 107 (226)
+.+.+-+.++...++.+-.|+|-||+=.+-||+-+..= -||.-.+||+=.+.++...|-+.+.+ . | |+++|.
T Consensus 54 ~~~~l~~~l~qrl~~Gk~tiidAtn~rr~~r~~l~~La~~y~~~~~~ivfdtp~~~c~aRNk~~~R----q-v-~~~VI~ 127 (168)
T COG4639 54 VWDILYKQLEQRLRRGKFTIIDATNLRREDRRKLIDLAKAYGYKIYAIVFDTPLELCLARNKLRER----Q-V-PEEVIP 127 (168)
T ss_pred HHHHHHHHHHHHHHcCCeEEEEcccCCHHHHHHHHHHHHHhCCeEEEEEEeCCHHHHHHHhhccch----h-C-CHHHHH
Confidence 34455666677788999999999999887766654433 67788899998999999998764443 3 8 999999
Q ss_pred HHHhccccCCCCCCC
Q psy7609 108 EMKANFKLPEVGELF 122 (226)
Q Consensus 108 eMKAnFsLP~~~e~f 122 (226)
.|-----.+..+|+|
T Consensus 128 r~~r~~~~~l~~e~~ 142 (168)
T COG4639 128 RMLRETIDLLEKEPF 142 (168)
T ss_pred HHHHHHHhhccCCCe
Confidence 887763334444544
No 10
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=93.90 E-value=1.8 Score=34.39 Aligned_cols=88 Identities=13% Similarity=0.117 Sum_probs=55.3
Q ss_pred cCCCcEEEeccCCChHHHhhhhccccCcceEEEEEeCChHHHHHHHHHHHHhcCCCCCCChHHHHHHHhccccCCCCCCC
Q psy7609 43 SRRRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVVVPTNEDYLARLEMHREKEGKDDVPPDNVILEMKANFKLPEVGELF 122 (226)
Q Consensus 43 rrrRNYILDQTNVy~sAqRRKM~~F~GFqRKAVVVvPteEe~k~R~~kr~~eeGK~~V~Pe~AvleMKAnFsLP~~~e~f 122 (226)
....+-|||.|+... .-|..++ -.+..-..|++-++.+++.+|+.+|. |.. + |.+.+..+...+..|...+.
T Consensus 68 ~~~~~~Vi~~t~~~~-~~r~~~~-~~~~~~~~i~l~~~~e~~~~R~~~R~---~~~-~-~~~~i~~~~~~~~~~~~~e~- 139 (163)
T TIGR01313 68 AKNKVGIITCSALKR-HYRDILR-EAEPNLHFIYLSGDKDVILERMKARK---GHF-M-KADMLESQFAALEEPLADET- 139 (163)
T ss_pred hcCCCEEEEecccHH-HHHHHHH-hcCCCEEEEEEeCCHHHHHHHHHhcc---CCC-C-CHHHHHHHHHHhCCCCCCCC-
Confidence 344566999997644 3344454 23333455777788999999999885 334 6 66778888777888876652
Q ss_pred ceeeec--cCChHHHHHHH
Q psy7609 123 EEVTYI--ELQHPEAEKII 139 (226)
Q Consensus 123 dEV~fv--EL~~eeA~klV 139 (226)
.+.-+ +.+.|+..+.+
T Consensus 140 -~~~~id~~~~~~~~~~~~ 157 (163)
T TIGR01313 140 -DVLRVDIDQPLEGVEEDC 157 (163)
T ss_pred -ceEEEECCCCHHHHHHHH
Confidence 23333 34444544443
No 11
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.62 E-value=0.39 Score=39.12 Aligned_cols=67 Identities=15% Similarity=-0.018 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHhhhcCCCcEEEeccCCChHHHhhhhccccCcceEEEEEeCChHHHHHHHHHHH
Q psy7609 26 VVDKTTKCLNRLLELGFSRRRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVVVPTNEDYLARLEMHR 92 (226)
Q Consensus 26 L~~~a~kcLnrLi~iAarrrRNYILDQTNVy~sAqRRKM~~F~GFqRKAVVVvPteEe~k~R~~kr~ 92 (226)
+.+.+-..+...+..+.....|.|+|-|+......|..++-|.+..-.-|.|.++.+++.+|..+|.
T Consensus 66 ~~~~~y~~~~~~~~~~l~~G~~VIvD~~~~~~~~~r~~~~~~~~~~~~~v~l~~~~~~l~~R~~~R~ 132 (175)
T cd00227 66 EFRLLEGAWYEAVAAMARAGANVIADDVFLGRAALQDCWRSFVGLDVLWVGVRCPGEVAEGRETARG 132 (175)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcEEEeeeccCCHHHHHHHHHhcCCCEEEEEEECCHHHHHHHHHhcC
Confidence 4556666666777778889999999998774455555666677655567778888999999999874
No 12
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=92.96 E-value=0.91 Score=42.67 Aligned_cols=89 Identities=18% Similarity=0.174 Sum_probs=64.9
Q ss_pred HHHHHHhhhcCCCcEEEeccCCChHHHhhhhccccCcc--eEEEEEeCChHHHHHHHHHHHHhcCCCCCCChHHHHHHHh
Q psy7609 34 LNRLLELGFSRRRNYILDQTNVYVSAQKRKMRSYFGFQ--RKAIVVVPTNEDYLARLEMHREKEGKDDVPPDNVILEMKA 111 (226)
Q Consensus 34 LnrLi~iAarrrRNYILDQTNVy~sAqRRKM~~F~GFq--RKAVVVvPteEe~k~R~~kr~~eeGK~~V~Pe~AvleMKA 111 (226)
+.+++..+-.++-=.|||-||.+.+-|..=.+....+. -..|.+-.+.|+..+|..+|. .. | |++++..|-.
T Consensus 116 ~~rLi~~~LsrpllvilDd~fy~ks~Ryel~~LAr~~~~~~~~V~ld~ple~~l~RN~~R~----~~-v-~devie~m~~ 189 (340)
T TIGR03575 116 CHSLTKPAVSRPLCLVLDDNFYYQSMRYEVYQLARKYSLGFCQLFLDCPVESCLLRNKQRP----VP-L-PDETIQLMGR 189 (340)
T ss_pred HHHHhHHHHhCCCCceecCCCCCHHHHHHHHHHHHHhCCCEEEEEEeCCHHHHHHHHhcCC----CC-C-CHHHHHHHHH
Confidence 46777777666667999999999998876555443332 245566677888999988874 45 8 9999999999
Q ss_pred ccccCCC-CCCCceeeec
Q psy7609 112 NFKLPEV-GELFEEVTYI 128 (226)
Q Consensus 112 nFsLP~~-~e~fdEV~fv 128 (226)
.|--|.. ..-.|.-.|.
T Consensus 190 r~E~P~~~~nrWd~pl~~ 207 (340)
T TIGR03575 190 KIEKPNPEKNAWEHNSLV 207 (340)
T ss_pred HhcCCCCCCCCCCCCeEE
Confidence 9999997 3444444443
No 13
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=92.20 E-value=0.69 Score=42.51 Aligned_cols=101 Identities=22% Similarity=0.346 Sum_probs=73.7
Q ss_pred HHHHHHHHhhhcCCCcE--EEeccCCChHHHhhhhccccCcc-eEEEEEeCChHHHHHHHHHHHHhcCCCCCCChHHHHH
Q psy7609 32 KCLNRLLELGFSRRRNY--ILDQTNVYVSAQKRKMRSYFGFQ-RKAIVVVPTNEDYLARLEMHREKEGKDDVPPDNVILE 108 (226)
Q Consensus 32 kcLnrLi~iAarrrRNY--ILDQTNVy~sAqRRKM~~F~GFq-RKAVVVvPteEe~k~R~~kr~~eeGK~~V~Pe~Avle 108 (226)
+...++|.-|-+ || |.|-||-|.|-||---+.=+.+. -=|||-+-+.-|.-. ++..+-|.. + |++++.+
T Consensus 62 ks~~rlldSalk---n~~VIvDdtNYyksmRrqL~ceak~~~tt~ciIyl~~plDtc~---rrN~ergep-i-p~Evl~q 133 (261)
T COG4088 62 KSVERLLDSALK---NYLVIVDDTNYYKSMRRQLACEAKERKTTWCIIYLRTPLDTCL---RRNRERGEP-I-PEEVLRQ 133 (261)
T ss_pred HHHHHHHHHHhc---ceEEEEecccHHHHHHHHHHHHHHhcCCceEEEEEccCHHHHH---HhhccCCCC-C-CHHHHHH
Confidence 334556666666 66 67999999999998777666654 446665544444322 344567777 9 9999999
Q ss_pred HHhccccCCCCCCCceeeeccCChHHHHHHHH
Q psy7609 109 MKANFKLPEVGELFEEVTYIELQHPEAEKIID 140 (226)
Q Consensus 109 MKAnFsLP~~~e~fdEV~fvEL~~eeA~klV~ 140 (226)
|--.|-=|+..-..|+-.|+-+..+.+.+-|+
T Consensus 134 ly~RfEePn~~~rWDspll~id~~d~~t~~ID 165 (261)
T COG4088 134 LYDRFEEPNPDRRWDSPLLVIDDSDVSTEVID 165 (261)
T ss_pred HHHhhcCCCCCccccCceEEEecccccccchh
Confidence 99999999999999999999987665555443
No 14
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=87.58 E-value=1.5 Score=35.94 Aligned_cols=93 Identities=20% Similarity=0.283 Sum_probs=55.3
Q ss_pred HHhhhcCCCcEEEeccCCChHHHhhhhccccCcceEEEEE-eCChHHHHHHHHHHHHhcCCCCCCChHHHHHHHhccccC
Q psy7609 38 LELGFSRRRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVV-VPTNEDYLARLEMHREKEGKDDVPPDNVILEMKANFKLP 116 (226)
Q Consensus 38 i~iAarrrRNYILDQTNVy~sAqRRKM~~F~GFqRKAVVV-vPteEe~k~R~~kr~~eeGK~~V~Pe~AvleMKAnFsLP 116 (226)
|+.+....+.-|||- +.-+-.+-++. ++.-..|-| +|+.+++++|+.++..+.-+. + ..-+..+...|...
T Consensus 86 i~~~~~~gk~~il~~-~~~g~~~L~~~----~~~~~~IfI~~~s~~~l~~~l~~r~~~~~~~-i--~~r~~~~~~~~~~~ 157 (183)
T PF00625_consen 86 IDKVLEEGKHCILDV-DPEGVKQLKKA----GFNPIVIFIKPPSPEVLKRRLRRRGDESEEE-I--EERLERAEKEFEHY 157 (183)
T ss_dssp HHHHHHTTTEEEEEE-THHHHHHHHHC----TTTEEEEEEEESSHHHHHHHHHTTTHCHHHH-H--HHHHHHHHHHHGGG
T ss_pred hhHhhhcCCcEEEEc-cHHHHHHHHhc----ccCceEEEEEccchHHHHHHHhccccccHHH-H--HHHHHHHHHHHhHh
Confidence 455667889999994 44443333433 555556655 688899999987654321111 1 22333444444433
Q ss_pred CCCCCCceeeeccCChHHHHHHHHHH
Q psy7609 117 EVGELFEEVTYIELQHPEAEKIIDEY 142 (226)
Q Consensus 117 ~~~e~fdEV~fvEL~~eeA~klV~kY 142 (226)
.. ||-|+--+ +.|+|.+.|.++
T Consensus 158 ~~---fd~vi~n~-~le~~~~~l~~i 179 (183)
T PF00625_consen 158 NE---FDYVIVND-DLEEAVKELKEI 179 (183)
T ss_dssp GG---SSEEEECS-SHHHHHHHHHHH
T ss_pred hc---CCEEEECc-CHHHHHHHHHHH
Confidence 33 88888755 788887777665
No 15
>PRK14737 gmk guanylate kinase; Provisional
Probab=86.41 E-value=5 Score=33.90 Aligned_cols=91 Identities=20% Similarity=0.251 Sum_probs=57.3
Q ss_pred HHhhhcCCCcEEEeccCCChHHHhhhhccccCcce-EEEEEeC-ChHHHHHHHHHHHHhcCCCCCCChHHHHHHHhcccc
Q psy7609 38 LELGFSRRRNYILDQTNVYVSAQKRKMRSYFGFQR-KAIVVVP-TNEDYLARLEMHREKEGKDDVPPDNVILEMKANFKL 115 (226)
Q Consensus 38 i~iAarrrRNYILDQTNVy~sAqRRKM~~F~GFqR-KAVVVvP-teEe~k~R~~kr~~eeGK~~V~Pe~AvleMKAnFsL 115 (226)
|+.+....++.|||- ++-+-.+-++. |.+ . ..|-|+| +.|++.+|+.+|- .+ +++.+.++-++- .
T Consensus 87 i~~~~~~g~~~i~d~-~~~g~~~l~~~--~~~--~~~~Ifi~pps~e~l~~RL~~R~----~~---s~e~i~~Rl~~~-~ 153 (186)
T PRK14737 87 IEDAFKEGRSAIMDI-DVQGAKIIKEK--FPE--RIVTIFIEPPSEEEWEERLIHRG----TD---SEESIEKRIENG-I 153 (186)
T ss_pred HHHHHHcCCeEEEEc-CHHHHHHHHHh--CCC--CeEEEEEECCCHHHHHHHHHhcC----CC---CHHHHHHHHHHH-H
Confidence 555667889999993 44444444443 322 2 3444544 6799999998773 33 555566655542 3
Q ss_pred CCC--CCCCceeeeccCChHHHHHHHHHH
Q psy7609 116 PEV--GELFEEVTYIELQHPEAEKIIDEY 142 (226)
Q Consensus 116 P~~--~e~fdEV~fvEL~~eeA~klV~kY 142 (226)
++. ...||-|+--+ +.++|..-|.+.
T Consensus 154 ~e~~~~~~~D~vI~N~-dle~a~~ql~~i 181 (186)
T PRK14737 154 IELDEANEFDYKIIND-DLEDAIADLEAI 181 (186)
T ss_pred HHHhhhccCCEEEECc-CHHHHHHHHHHH
Confidence 433 37799999888 888887666543
No 16
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=82.20 E-value=11 Score=37.46 Aligned_cols=67 Identities=13% Similarity=0.172 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhhhcCCCcEEEeccCCChHHHhhhhccccCcc-eEEEEEeCChHHHHHHHHHHHHhcCCC
Q psy7609 30 TTKCLNRLLELGFSRRRNYILDQTNVYVSAQKRKMRSYFGFQ-RKAIVVVPTNEDYLARLEMHREKEGKD 98 (226)
Q Consensus 30 a~kcLnrLi~iAarrrRNYILDQTNVy~sAqRRKM~~F~GFq-RKAVVVvPteEe~k~R~~kr~~eeGK~ 98 (226)
+...+..+|+.+.+...+.|||=.|.++.-.+.++ +.+=. .--+|+|+++|++++|...|....+..
T Consensus 344 V~~gi~~vI~r~l~eG~SvIIEGVHl~P~~i~~~~--~~~~~~i~flv~isdeeeH~~Rf~~Ra~~~~~~ 411 (475)
T PRK12337 344 VAVGLGAIQERSAQEGTSLVLEGVHLVPGYLRHPY--QAGALVVPMLVTLPDEALHRRRFELRDRETGAS 411 (475)
T ss_pred HHHHHHHHHHHHHHcCCeEEEECCCCCHHHHHHHH--hcCCceEEEEEEECCHHHHHHHHHHHhhhccCC
Confidence 33349999999999999999999999999876444 33322 234788999999999999999888765
No 17
>KOG2242|consensus
Probab=81.13 E-value=0.53 Score=47.12 Aligned_cols=100 Identities=11% Similarity=0.094 Sum_probs=84.2
Q ss_pred CcEEEeccCCChHHHhhhhccccCcceEEEEEeCChHHHHHHHHHHHHhcCCCCCCChHHHHHHHhccccCCCC-CCCce
Q psy7609 46 RNYILDQTNVYVSAQKRKMRSYFGFQRKAIVVVPTNEDYLARLEMHREKEGKDDVPPDNVILEMKANFKLPEVG-ELFEE 124 (226)
Q Consensus 46 RNYILDQTNVy~sAqRRKM~~F~GFqRKAVVVvPteEe~k~R~~kr~~eeGK~~V~Pe~AvleMKAnFsLP~~~-e~fdE 124 (226)
++-++++++++.++.| +..+..+.|.||.+-|.+-.+..|...+++..+-. + -+.++.....+++||... -++||
T Consensus 49 ~~~~~~~~~~~~~~e~--~~~~~~~~r~a~~~~~~~~~~~~~~~e~~~~~~~~-~-~~~~~~~~~~~~~L~~~~~~~~~~ 124 (558)
T KOG2242|consen 49 KYRRDRSSGYALTKER--FAGPWDGARAAYSVSRGEVCFEMRINEPEEVPHFQ-P-LEPDPHDVRIGWSLDSIRTLLGDE 124 (558)
T ss_pred hcccccccccccchhh--ccccCcccceeeeecCCcchhhcccccccccCCCC-c-cccccccccccccchhhhhccccc
Confidence 7888999999999999 66666677999999999999999999998877555 5 788888899999999976 78888
Q ss_pred e---eeccCChHHHHHHHHHHHHhcccC
Q psy7609 125 V---TYIELQHPEAEKIIDEYNKNADGT 149 (226)
Q Consensus 125 V---~fvEL~~eeA~klV~kYn~E~r~~ 149 (226)
. .|.++..+...-.+++|++-....
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~e~f~e~ 152 (558)
T KOG2242|consen 125 PFSYGYSETGKKSCNSEVEKYGEKFPEN 152 (558)
T ss_pred cccccccccccchhhHHHHHHHhhcccc
Confidence 8 899999888888888887765543
No 18
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=80.61 E-value=14 Score=30.49 Aligned_cols=90 Identities=18% Similarity=0.158 Sum_probs=49.4
Q ss_pred HHHhhhcCCCcEEEeccCCChHHHhhhhccccCcceEEEEE-eCChHHHHHHHHHHHHhcCCCCCCChHHHHHHHhc--c
Q psy7609 37 LLELGFSRRRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVV-VPTNEDYLARLEMHREKEGKDDVPPDNVILEMKAN--F 113 (226)
Q Consensus 37 Li~iAarrrRNYILDQTNVy~sAqRRKM~~F~GFqRKAVVV-vPteEe~k~R~~kr~~eeGK~~V~Pe~AvleMKAn--F 113 (226)
.|+-+.+..++.|||-+ +-+-.+-+++. +.-..|-| .|+.+++++|+.+|. .+ .++.+.++-+. .
T Consensus 85 ~i~~~~~~~~~~ild~~-~~~~~~l~~~~----~~~~vIfi~~~s~~~l~~rl~~R~----~~---~~~~i~~rl~~a~~ 152 (184)
T smart00072 85 TIRQVAEQGKHCLLDID-PQGVKQLRKAQ----LYPIVIFIAPPSSEELERRLRGRG----TE---TAERIQKRLAAAQK 152 (184)
T ss_pred HHHHHHHcCCeEEEEEC-HHHHHHHHHhC----CCcEEEEEeCcCHHHHHHHHHhcC----CC---CHHHHHHHHHHHHH
Confidence 34555567899999965 44444444432 23334444 377778999999764 33 33333332222 1
Q ss_pred ccCCCCCCCceeeeccCChHHHHHHHH
Q psy7609 114 KLPEVGELFEEVTYIELQHPEAEKIID 140 (226)
Q Consensus 114 sLP~~~e~fdEV~fvEL~~eeA~klV~ 140 (226)
-+ .....||-|+--+ +.++|-+-|.
T Consensus 153 ~~-~~~~~fd~~I~n~-~l~~~~~~l~ 177 (184)
T smart00072 153 EA-QEYHLFDYVIVND-DLEDAYEELK 177 (184)
T ss_pred HH-hhhccCCEEEECc-CHHHHHHHHH
Confidence 11 1125688887776 6666544443
No 19
>PRK06762 hypothetical protein; Provisional
Probab=77.54 E-value=34 Score=27.17 Aligned_cols=86 Identities=10% Similarity=0.092 Sum_probs=55.2
Q ss_pred HHHHhhhcCCCcEEEeccCCChHHHhhhhccc---cCcceEEEEEeCChHHHHHHHHHHHHhcCCCCCCChHHHHHHHhc
Q psy7609 36 RLLELGFSRRRNYILDQTNVYVSAQKRKMRSY---FGFQRKAIVVVPTNEDYLARLEMHREKEGKDDVPPDNVILEMKAN 112 (226)
Q Consensus 36 rLi~iAarrrRNYILDQTNVy~sAqRRKM~~F---~GFqRKAVVVvPteEe~k~R~~kr~~eeGK~~V~Pe~AvleMKAn 112 (226)
.++..+.....+.|||-++.. ...|..++.. .+..-..|++-++.|+..+|..+|.. ... + |++.+..+-..
T Consensus 59 ~~~~~~~~~g~~vild~~~~~-~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R~~--~~~-~-~~~~l~~~~~~ 133 (166)
T PRK06762 59 QLVRYGLGHCEFVILEGILNS-DRYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHSTRPK--SHE-F-GEDDMRRWWNP 133 (166)
T ss_pred HHHHHHHhCCCEEEEchhhcc-HhHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhcccc--ccc-C-CHHHHHHHHhh
Confidence 344555667789999977533 3333222322 23334567777787899999988863 233 6 88999999888
Q ss_pred cccCCCCCCCceeeecc
Q psy7609 113 FKLPEVGELFEEVTYIE 129 (226)
Q Consensus 113 FsLP~~~e~fdEV~fvE 129 (226)
+-.++ .++++...+
T Consensus 134 ~~~~~---~~~~~~~~~ 147 (166)
T PRK06762 134 HDTLG---VIGETIFTD 147 (166)
T ss_pred cCCcC---CCCeEEecC
Confidence 88764 256665443
No 20
>PF06348 DUF1059: Protein of unknown function (DUF1059); InterPro: IPR009409 This entry consists of short hypothetical archaeal and bacterial proteins of unknown function.
Probab=75.41 E-value=8.7 Score=27.38 Aligned_cols=44 Identities=14% Similarity=0.336 Sum_probs=38.4
Q ss_pred CcceEEEEEeCChHHHHHHHHHHHHhc-CCCCCCChHHHHHHHhcc
Q psy7609 69 GFQRKAIVVVPTNEDYLARLEMHREKE-GKDDVPPDNVILEMKANF 113 (226)
Q Consensus 69 GFqRKAVVVvPteEe~k~R~~kr~~ee-GK~~V~Pe~AvleMKAnF 113 (226)
||.+-.++.-.++||+.+.+..+..+. |...| |++.+.+.|.++
T Consensus 10 g~~C~~~~~a~tedEll~~~~~Ha~~~Hg~~~~-~~el~~~ir~~I 54 (57)
T PF06348_consen 10 GPDCGFVIRAETEDELLEAVVEHAREVHGMTEI-PEELREKIRSAI 54 (57)
T ss_pred CCCCCeEEeeCCHHHHHHHHHHHHHHhcCCccC-CHHHHHHHHHHh
Confidence 577888888899999999999999887 77778 999999998875
No 21
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=74.72 E-value=42 Score=26.84 Aligned_cols=92 Identities=20% Similarity=0.219 Sum_probs=49.7
Q ss_pred HHHHhhhcCCCcEEEeccCCChHHHhhhhccccCcceEEEEE-eCChHHHHHHHHHHHHhcCCCCCCChHHHHHHHhccc
Q psy7609 36 RLLELGFSRRRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVV-VPTNEDYLARLEMHREKEGKDDVPPDNVILEMKANFK 114 (226)
Q Consensus 36 rLi~iAarrrRNYILDQTNVy~sAqRRKM~~F~GFqRKAVVV-vPteEe~k~R~~kr~~eeGK~~V~Pe~AvleMKAnFs 114 (226)
..++-+....++.|+|-+ +-...+-++ .| +.-.-|++ .|++|.+.+|+.+|. .+ +++.+..-.++..
T Consensus 82 ~~i~~~~~~g~~vi~d~~-~~~~~~~~~--~~--~~~~~i~~~~~~~e~~~~Rl~~r~----~~---~~~~i~~rl~~~~ 149 (180)
T TIGR03263 82 SPVEEALAAGKDVLLEID-VQGARQVKK--KF--PDAVSIFILPPSLEELERRLRKRG----TD---SEEVIERRLAKAK 149 (180)
T ss_pred HHHHHHHHCCCeEEEECC-HHHHHHHHH--hC--CCcEEEEEECCCHHHHHHHHHHcC----CC---CHHHHHHHHHHHH
Confidence 345666677899999953 333221221 22 22344444 466788999998663 33 3333433322222
Q ss_pred cCC-CCCCCceeeeccCChHHHHHHHH
Q psy7609 115 LPE-VGELFEEVTYIELQHPEAEKIID 140 (226)
Q Consensus 115 LP~-~~e~fdEV~fvEL~~eeA~klV~ 140 (226)
... ....||-|+.-+ +.++|.+-|.
T Consensus 150 ~~~~~~~~~d~~i~n~-~~~~~~~~l~ 175 (180)
T TIGR03263 150 KEIAHADEFDYVIVND-DLEKAVEELK 175 (180)
T ss_pred HHHhccccCcEEEECC-CHHHHHHHHH
Confidence 111 135688888776 6666655444
No 22
>PLN02772 guanylate kinase
Probab=73.25 E-value=14 Score=36.06 Aligned_cols=91 Identities=20% Similarity=0.276 Sum_probs=57.0
Q ss_pred HHHhhhcCCCcEEEeccCCChHHHhhhhccccCcceEEEEEeC-ChHHHHHHHHHHHHhcCCCCCCChHHHHHHHhccc-
Q psy7609 37 LLELGFSRRRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVVVP-TNEDYLARLEMHREKEGKDDVPPDNVILEMKANFK- 114 (226)
Q Consensus 37 Li~iAarrrRNYILDQTNVy~sAqRRKM~~F~GFqRKAVVVvP-teEe~k~R~~kr~~eeGK~~V~Pe~AvleMKAnFs- 114 (226)
-++.+.+..++-||| .++-+..+-++.. +.-..|+|+| +.|++.+|+..|- .+ .++.+.++-++..
T Consensus 218 ~V~~vl~~Gk~vILd-LD~qGar~Lr~~~----l~~v~IFI~PPSlEeLe~RL~~RG----te---seE~I~kRL~~A~~ 285 (398)
T PLN02772 218 AVEVVTDSGKRCILD-IDVQGARSVRASS----LEAIFIFICPPSMEELEKRLRARG----TE---TEEQIQKRLRNAEA 285 (398)
T ss_pred HHHHHHHhCCcEEEe-CCHHHHHHHHHhc----CCeEEEEEeCCCHHHHHHHHHhcC----CC---CHHHHHHHHHHHHH
Confidence 345666788999999 4455555555543 3445566655 5688999988764 33 4556666555543
Q ss_pred -cCCC--CCCCceeeeccCChHHHHHHHH
Q psy7609 115 -LPEV--GELFEEVTYIELQHPEAEKIID 140 (226)
Q Consensus 115 -LP~~--~e~fdEV~fvEL~~eeA~klV~ 140 (226)
++.. ...||.++.-+ +.|+|-+-|.
T Consensus 286 Ei~~~~~~~~fD~vIvND-dLe~A~~~L~ 313 (398)
T PLN02772 286 ELEQGKSSGIFDHILYND-NLEECYKNLK 313 (398)
T ss_pred HHhhccccCCCCEEEECC-CHHHHHHHHH
Confidence 3322 35799998777 6666544433
No 23
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=72.04 E-value=29 Score=30.87 Aligned_cols=85 Identities=18% Similarity=0.203 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHhhh-cCCCcEEEeccCCChHHHhhhhccccCcceEE--EEEeCChHHHHHHHHHHHH---hcCCCCCC
Q psy7609 28 DKTTKCLNRLLELGF-SRRRNYILDQTNVYVSAQKRKMRSYFGFQRKA--IVVVPTNEDYLARLEMHRE---KEGKDDVP 101 (226)
Q Consensus 28 ~~a~kcLnrLi~iAa-rrrRNYILDQTNVy~sAqRRKM~~F~GFqRKA--VVVvPteEe~k~R~~kr~~---eeGK~~V~ 101 (226)
+.|..||+.|+.--. ....==|+|-||+...-|+.-+.-|.....+. |=++.+|+++..+=.+... .|-+. .+
T Consensus 78 ~~a~~~l~dl~~~l~~~~G~VAI~DATN~T~~RR~~l~~~~~~~~~~vlFIEsic~D~~ii~~NI~~~~~~spDY~~-~~ 156 (222)
T PF01591_consen 78 QIAKEALEDLIEWLQEEGGQVAIFDATNSTRERRKMLVERFKEHGIKVLFIESICDDPEIIERNIREKKQNSPDYKG-MD 156 (222)
T ss_dssp HHHHHHHHHHHHHHHTS--SEEEEES---SHHHHHHHHHHHHHTT-EEEEEEEE---HHHHHHHHHHHHTTSGGGTT-S-
T ss_pred HHHHHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEEeCCHHHHHHHHHHHHcCCccccc-CC
Confidence 346677888887666 34444599999999988887777775544333 3356777776655444432 22344 44
Q ss_pred ChHHHHHHHhcc
Q psy7609 102 PDNVILEMKANF 113 (226)
Q Consensus 102 Pe~AvleMKAnF 113 (226)
|++|+...+.-.
T Consensus 157 ~e~A~~Df~~RI 168 (222)
T PF01591_consen 157 PEEAIEDFKKRI 168 (222)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777766543
No 24
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=71.54 E-value=5.1 Score=29.51 Aligned_cols=47 Identities=19% Similarity=0.221 Sum_probs=32.8
Q ss_pred hhcCCCcEEEeccCCChHHHhhhhccccCcceEEEEEeCChHHHHHHHHHHHHh
Q psy7609 41 GFSRRRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVVVPTNEDYLARLEMHREK 94 (226)
Q Consensus 41 AarrrRNYILDQTNVy~sAqRRKM~~F~GFqRKAVVVvPteEe~k~R~~kr~~e 94 (226)
.....+++|||-+-......+-....| |.+=.++|++.+|+.+|...
T Consensus 69 ~~~~~~~~iid~~~~~~~~~~~~~~~~-------i~L~~~~e~~~~R~~~R~~~ 115 (129)
T PF13238_consen 69 RMNKGRNIIIDGILSNLELERLFDIKF-------IFLDCSPEELRKRLKKRGRK 115 (129)
T ss_dssp HHTTTSCEEEEESSEEECETTEEEESS-------EEEE--HHHHHHHHHCTTTS
T ss_pred ccccCCcEEEecccchhcccccceeeE-------EEEECCHHHHHHHHHhCCCC
Confidence 467899999998765554444444444 88888889999999987743
No 25
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=62.93 E-value=12 Score=33.16 Aligned_cols=51 Identities=22% Similarity=0.264 Sum_probs=38.1
Q ss_pred HHHhhhcCCCcEEEeccCCChHHHhhhhccccCcceEE-EEEeCChHHHHHHHHHHH
Q psy7609 37 LLELGFSRRRNYILDQTNVYVSAQKRKMRSYFGFQRKA-IVVVPTNEDYLARLEMHR 92 (226)
Q Consensus 37 Li~iAarrrRNYILDQTNVy~sAqRRKM~~F~GFqRKA-VVVvPteEe~k~R~~kr~ 92 (226)
-++.+....+|+|||.. +.+.-|-|+-.| .-.. .+..|+-|+|++|+..|-
T Consensus 85 ~ve~~~~~G~~vildId-~qGa~qvk~~~p----~~v~IFi~pPs~eeL~~RL~~Rg 136 (191)
T COG0194 85 PVEQALAEGKDVILDID-VQGALQVKKKMP----NAVSIFILPPSLEELERRLKGRG 136 (191)
T ss_pred HHHHHHhcCCeEEEEEe-hHHHHHHHHhCC----CeEEEEEcCCCHHHHHHHHHccC
Confidence 45667778999999976 888888777777 2222 234588899999998876
No 26
>PRK14738 gmk guanylate kinase; Provisional
Probab=61.78 E-value=90 Score=26.39 Aligned_cols=51 Identities=20% Similarity=0.364 Sum_probs=31.3
Q ss_pred HHHhhhcCCCcEEEeccCCChHHHhhhhccccCcceEEEEEe-CChHHHHHHHHHHH
Q psy7609 37 LLELGFSRRRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVVV-PTNEDYLARLEMHR 92 (226)
Q Consensus 37 Li~iAarrrRNYILDQTNVy~sAqRRKM~~F~GFqRKAVVVv-PteEe~k~R~~kr~ 92 (226)
-|+-+.+..++.|+| +++-....-++..| .-..|+++ |+.+++.+|+.+|.
T Consensus 95 ~i~~~~~~g~~vi~~-~~~~g~~~l~~~~p----d~~~if~~pps~e~l~~Rl~~R~ 146 (206)
T PRK14738 95 PVRQALASGRDVIVK-VDVQGAASIKRLVP----EAVFIFLAPPSMDELTRRLELRR 146 (206)
T ss_pred HHHHHHHcCCcEEEE-cCHHHHHHHHHhCC----CeEEEEEeCCCHHHHHHHHHHcC
Confidence 456667788999998 44433222233222 23445566 56778999999874
No 27
>PLN03025 replication factor C subunit; Provisional
Probab=61.68 E-value=19 Score=32.36 Aligned_cols=29 Identities=17% Similarity=0.125 Sum_probs=24.3
Q ss_pred CChHHHHHHHHHHHHhcCCCCCCChHHHHHH
Q psy7609 79 PTNEDYLARLEMHREKEGKDDVPPDNVILEM 109 (226)
Q Consensus 79 PteEe~k~R~~kr~~eeGK~~V~Pe~AvleM 109 (226)
|+++++..++.+..+++|.. + +++++..+
T Consensus 158 l~~~~l~~~L~~i~~~egi~-i-~~~~l~~i 186 (319)
T PLN03025 158 LSDQEILGRLMKVVEAEKVP-Y-VPEGLEAI 186 (319)
T ss_pred CCHHHHHHHHHHHHHHcCCC-C-CHHHHHHH
Confidence 67899999999999999998 8 77766544
No 28
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=60.49 E-value=36 Score=25.21 Aligned_cols=69 Identities=20% Similarity=0.287 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCCcEEEeccCCChHHHhhhhccccCcceEEEEEeCChHHHHHHHHHHHHhcCCC
Q psy7609 23 WVQVVDKTTKCLNRLLELGFSRRRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVVVPTNEDYLARLEMHREKEGKD 98 (226)
Q Consensus 23 wd~L~~~a~kcLnrLi~iAarrrRNYILDQTNVy~sAqRRKM~~F~GFqRKAVVVvPteEe~k~R~~kr~~eeGK~ 98 (226)
++...+....++..+.. .....++|||-+ +. ....+ .+..+.....+++|.++..+++++++.+.+|.+
T Consensus 50 ~~~~~~~~~~~l~~~~~--~~~~~~~ii~g~--~~--~~~~~-~~~~~~~~i~l~~~~~~~~~~~~~R~~~~~~r~ 118 (121)
T PF13207_consen 50 IDADIDLLDDILEQLQN--KPDNDNWIIDGS--YE--SEMEI-RLPEFDHVIYLDAPDEECRERRLKRRLRRRGRD 118 (121)
T ss_dssp HHHHHHHHHHHHHHHHE--TTT--EEEEECC--SC--HCCHS-CCHHGGCEEEEEEEEHHHHHHHHHHHHHHEESS
T ss_pred HHHHHHHHHHHHHhhhc--cCCCCeEEEeCC--Cc--cchhh-hhhcCCEEEEEECCCHHHHHHHHHHHhHHcCCC
Confidence 45555555666665544 335667999982 22 22223 333344566666677768899999989888887
No 29
>PRK00300 gmk guanylate kinase; Provisional
Probab=57.79 E-value=86 Score=25.66 Aligned_cols=97 Identities=15% Similarity=0.150 Sum_probs=50.8
Q ss_pred HHHHhhhcCCCcEEEeccCCChHHHhhhhccccCcceEEEEEe-CChHHHHHHHHHHHHhcCCCCCCChHHHHHHHhccc
Q psy7609 36 RLLELGFSRRRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVVV-PTNEDYLARLEMHREKEGKDDVPPDNVILEMKANFK 114 (226)
Q Consensus 36 rLi~iAarrrRNYILDQTNVy~sAqRRKM~~F~GFqRKAVVVv-PteEe~k~R~~kr~~eeGK~~V~Pe~AvleMKAnFs 114 (226)
..++-+....++-|+|- ++....+-++..+ .-..|+++ |+++++.+|+.+|. .+ +++.+..--+.+.
T Consensus 86 ~~i~~~l~~g~~vi~dl-~~~g~~~l~~~~~----~~~~I~i~~~s~~~l~~Rl~~R~----~~---~~~~i~~rl~~~~ 153 (205)
T PRK00300 86 SPVEEALAAGKDVLLEI-DWQGARQVKKKMP----DAVSIFILPPSLEELERRLRGRG----TD---SEEVIARRLAKAR 153 (205)
T ss_pred HHHHHHHHcCCeEEEeC-CHHHHHHHHHhCC----CcEEEEEECcCHHHHHHHHHhcC----CC---CHHHHHHHHHHHH
Confidence 44566667788889994 4544433333222 22335554 56788999998764 33 3333333222222
Q ss_pred cCC-CCCCCceeeeccCChHHHHHHHHHHHHh
Q psy7609 115 LPE-VGELFEEVTYIELQHPEAEKIIDEYNKN 145 (226)
Q Consensus 115 LP~-~~e~fdEV~fvEL~~eeA~klV~kYn~E 145 (226)
.+. ....||-|+- .-+.+++..-|..+=+.
T Consensus 154 ~~~~~~~~~d~vi~-n~~~e~~~~~l~~il~~ 184 (205)
T PRK00300 154 EEIAHASEYDYVIV-NDDLDTALEELKAIIRA 184 (205)
T ss_pred HHHHhHHhCCEEEE-CCCHHHHHHHHHHHHHH
Confidence 221 1245777774 44666655544444333
No 30
>PRK12338 hypothetical protein; Provisional
Probab=55.45 E-value=94 Score=29.35 Aligned_cols=67 Identities=4% Similarity=0.025 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHhhhcCCCcEEEeccCCChHHHhhhhccccCcceEEEEEeCChHHHHHHHHHHHHh
Q psy7609 27 VDKTTKCLNRLLELGFSRRRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVVVPTNEDYLARLEMHREK 94 (226)
Q Consensus 27 ~~~a~kcLnrLi~iAarrrRNYILDQTNVy~sAqRRKM~~F~GFqRKAVVVvPteEe~k~R~~kr~~e 94 (226)
.+.....+..+++.+++.+-+.||+=....+.--.++.. -....-..+|+.|++|++++|...|...
T Consensus 87 ~~~V~~~i~~vi~r~~~~g~svIiEGvhl~P~~i~~~~~-~~~~~v~~~vl~~dee~h~~Rf~~R~~~ 153 (319)
T PRK12338 87 ASFVIPAIEKVIERAVTDSDDIVIEGVHLVPGLIDIEQF-EENASIHFFILSADEEVHKERFVKRAME 153 (319)
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEeccccHHHHhhhhh-cccCceEEEEEECCHHHHHHHHHHhhhc
Confidence 344445577799999999999999999888876554321 1223567889999999999999997743
No 31
>PRK08356 hypothetical protein; Provisional
Probab=55.32 E-value=1.2e+02 Score=25.14 Aligned_cols=92 Identities=17% Similarity=0.152 Sum_probs=50.0
Q ss_pred CcEEEeccCCChHHHhhhhccccCcceEEEEEeCChHHHHHHHHHHHHhcCCCCCCChHHHHHHH---h-ccccCCCCCC
Q psy7609 46 RNYILDQTNVYVSAQKRKMRSYFGFQRKAIVVVPTNEDYLARLEMHREKEGKDDVPPDNVILEMK---A-NFKLPEVGEL 121 (226)
Q Consensus 46 RNYILDQTNVy~sAqRRKM~~F~GFqRKAVVVvPteEe~k~R~~kr~~eeGK~~V~Pe~AvleMK---A-nFsLP~~~e~ 121 (226)
.+++||= +-.-.|.+.|+... -..|+|-++++.+.+|+.+|..+.-.. +...+.+..+. . -|..++.-+.
T Consensus 95 ~~ividG--~r~~~q~~~l~~~~---~~vi~l~~~~~~~~~Rl~~R~~~~~~~-~~~~e~~~~~~~~~~~l~~~~~~~~~ 168 (195)
T PRK08356 95 KNIAIDG--VRSRGEVEAIKRMG---GKVIYVEAKPEIRFERLRRRGAEKDKG-IKSFEDFLKFDEWEEKLYHTTKLKDK 168 (195)
T ss_pred CeEEEcC--cCCHHHHHHHHhcC---CEEEEEECCHHHHHHHHHhcCCccccc-cccHHHHHHHHHHHHHhhhhhhHHHh
Confidence 4789984 33444544444322 246667788899999999875322111 10122223331 1 1234444466
Q ss_pred CceeeeccCChHHHHHHHHHHH
Q psy7609 122 FEEVTYIELQHPEAEKIIDEYN 143 (226)
Q Consensus 122 fdEV~fvEL~~eeA~klV~kYn 143 (226)
+|=|+.-+-+.+++.+-|.+.-
T Consensus 169 aD~vI~N~~~~e~~~~~i~~~~ 190 (195)
T PRK08356 169 ADFVIVNEGTLEELRKKVEEIL 190 (195)
T ss_pred CcEEEECCCCHHHHHHHHHHHH
Confidence 7777755567777666665543
No 32
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=54.91 E-value=37 Score=30.47 Aligned_cols=70 Identities=14% Similarity=0.150 Sum_probs=47.6
Q ss_pred eEEEEEeCChHHHHHHHHHHHHhcCCCCCCChHHHHHHHhccccCCCCCCCceeeecc--CChHHHHHHHHHHHHhcc
Q psy7609 72 RKAIVVVPTNEDYLARLEMHREKEGKDDVPPDNVILEMKANFKLPEVGELFEEVTYIE--LQHPEAEKIIDEYNKNAD 147 (226)
Q Consensus 72 RKAVVVvPteEe~k~R~~kr~~eeGK~~V~Pe~AvleMKAnFsLP~~~e~fdEV~fvE--L~~eeA~klV~kYn~E~r 147 (226)
--.|+|.+++|...+|+.+| .|-. ++++...+++-.+.-+.....|-|+.-. -+.++-++-|++.-++-+
T Consensus 138 D~iv~V~a~~e~ri~RL~~R---~g~s---~eea~~Ri~~Q~~~~ek~~~aD~VI~N~~~g~~~~L~~~v~~~~~~~~ 209 (244)
T PTZ00451 138 SASVVVSCSEERQIERLRKR---NGFS---KEEALQRIGSQMPLEEKRRLADYIIENDSADDLDELRGSVCDCVAWMS 209 (244)
T ss_pred CeEEEEECCHHHHHHHHHHc---CCCC---HHHHHHHHHhCCCHHHHHHhCCEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 34666777778889999877 3444 7788888877555444457888888887 677776666665544433
No 33
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=53.71 E-value=73 Score=25.55 Aligned_cols=50 Identities=12% Similarity=-0.136 Sum_probs=34.2
Q ss_pred hhcCCCcEEEeccCCChHHHhhhhccccCcceEEEEEeCChHHHHHHHHH
Q psy7609 41 GFSRRRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVVVPTNEDYLARLEM 90 (226)
Q Consensus 41 AarrrRNYILDQTNVy~sAqRRKM~~F~GFqRKAVVVvPteEe~k~R~~k 90 (226)
..+...+.|+|.||.+...|.+-.....++.-..|.+-++.|+..+|-.+
T Consensus 67 l~~~G~~VIid~~~~~~~~R~~~~~l~~~~~~~~i~l~~~~e~~~~R~~~ 116 (149)
T cd02027 67 LADAGLIVIAAFISPYREDREAARKIIGGGDFLEVFVDTPLEVCEQRDPK 116 (149)
T ss_pred HHhCCCEEEEccCCCCHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhCch
Confidence 33467899999998876665432223346666677788888888888544
No 34
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=50.55 E-value=68 Score=29.07 Aligned_cols=97 Identities=16% Similarity=0.177 Sum_probs=51.1
Q ss_pred cchhHHHHHHHHHHHHHHHHhhhcCCCcEEEeccCCChHHHhhhhccccCcc-eEEEEEeC-ChHHHHHHHHHHHHhcCC
Q psy7609 20 KGSWVQVVDKTTKCLNRLLELGFSRRRNYILDQTNVYVSAQKRKMRSYFGFQ-RKAIVVVP-TNEDYLARLEMHREKEGK 97 (226)
Q Consensus 20 ~grwd~L~~~a~kcLnrLi~iAarrrRNYILDQTNVy~sAqRRKM~~F~GFq-RKAVVVvP-teEe~k~R~~kr~~eeGK 97 (226)
...|..+... |...++++..+..=+|||-+|=|.|=|.--.+.=..++ .-|||.|- +.|.-..|=++|. +..
T Consensus 50 ~~~Ek~~R~~----l~s~v~r~ls~~~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R~--~~~ 123 (270)
T PF08433_consen 50 SKKEKEARGS----LKSAVERALSKDTIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKRP--EPE 123 (270)
T ss_dssp GGGHHHHHHH----HHHHHHHHHTT-SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHTT---S-
T ss_pred hhhhHHHHHH----HHHHHHHhhccCeEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhccC--CCC
Confidence 4445444443 44455555566788999999977776665555444444 34555444 4455555555554 222
Q ss_pred CCCCChHHHHHHHhccccCCCCCCCce
Q psy7609 98 DDVPPDNVILEMKANFKLPEVGELFEE 124 (226)
Q Consensus 98 ~~V~Pe~AvleMKAnFsLP~~~e~fdE 124 (226)
. + |++.+.+|-.-|=.|....-.|.
T Consensus 124 ~-~-~~e~i~~m~~RfE~P~~~nrWD~ 148 (270)
T PF08433_consen 124 R-Y-PEETIDDMIQRFEEPDPKNRWDS 148 (270)
T ss_dssp --S--HHHHHHHHHH---TTSS-GGGS
T ss_pred C-C-CHHHHHHHHHHhcCCCCCCCccC
Confidence 3 7 99999999999999998643443
No 35
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=47.89 E-value=49 Score=28.12 Aligned_cols=64 Identities=16% Similarity=0.089 Sum_probs=39.2
Q ss_pred EEEEEeCChHHHHHHHHHHHHhcCCCCCCChHHHHHHHhccccCCCCCCCceeeeccCChHHHHHHHHHH
Q psy7609 73 KAIVVVPTNEDYLARLEMHREKEGKDDVPPDNVILEMKANFKLPEVGELFEEVTYIELQHPEAEKIIDEY 142 (226)
Q Consensus 73 KAVVVvPteEe~k~R~~kr~~eeGK~~V~Pe~AvleMKAnFsLP~~~e~fdEV~fvEL~~eeA~klV~kY 142 (226)
..|+|.+++|+..+|+.+|- +.. ++++...|..-+..-+.-+.+|-|+.-.-+.|+..+-|.++
T Consensus 136 ~ii~V~a~~e~~~~Rl~~R~---~~s---~e~~~~Ri~~q~~~~~~~~~ad~vI~N~g~~e~l~~~i~~~ 199 (208)
T PRK14731 136 FIVVVAADTELRLERAVQRG---MGS---REEIRRRIAAQWPQEKLIERADYVIYNNGTLDELKAQTEQL 199 (208)
T ss_pred eEEEEECCHHHHHHHHHHcC---CCC---HHHHHHHHHHcCChHHHHHhCCEEEECCCCHHHHHHHHHHH
Confidence 34667777888999999983 222 56666666543332222255777776666666655555544
No 36
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=47.26 E-value=79 Score=27.03 Aligned_cols=67 Identities=13% Similarity=0.094 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCcEEEeccCCChHHH--hhhh-ccccCcceEEEEEeCChHHHHHHHHHHH
Q psy7609 24 VQVVDKTTKCLNRLLELGFSRRRNYILDQTNVYVSAQ--KRKM-RSYFGFQRKAIVVVPTNEDYLARLEMHR 92 (226)
Q Consensus 24 d~L~~~a~kcLnrLi~iAarrrRNYILDQTNVy~sAq--RRKM-~~F~GFqRKAVVVvPteEe~k~R~~kr~ 92 (226)
..+....-..+..-+...++..-|.|+| .|+..-. ...+ +.|.|+.-=-|.|.++.|++.+|-..|-
T Consensus 62 ~~~~~~~~~~~~~~iaa~a~aG~~VIvD--~v~~~~~~l~d~l~~~L~~~~vl~VgV~Cpleil~~RE~~Rg 131 (174)
T PF07931_consen 62 GPLFRRLYAAMHAAIAAMARAGNNVIVD--DVFLGPRWLQDCLRRLLAGLPVLFVGVRCPLEILERRERARG 131 (174)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTT-EEEEE--E--TTTHHHHHHHHHHHTTS-EEEEEEE--HHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCCEEEe--cCccCcHHHHHHHHHHhCCCceEEEEEECCHHHHHHHHHhcC
Confidence 4677777788888899999999999999 4554433 3455 6788998888888888888887766555
No 37
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=46.22 E-value=1.9e+02 Score=29.37 Aligned_cols=79 Identities=13% Similarity=0.074 Sum_probs=47.4
Q ss_pred HHHHHHHhhhcCCCcEEEeccCCChHHHhhhhccc------cCcceEEEEEeCChHHHHHHHHHHHHhcCCCCCCChHHH
Q psy7609 33 CLNRLLELGFSRRRNYILDQTNVYVSAQKRKMRSY------FGFQRKAIVVVPTNEDYLARLEMHREKEGKDDVPPDNVI 106 (226)
Q Consensus 33 cLnrLi~iAarrrRNYILDQTNVy~sAqRRKM~~F------~GFqRKAVVVvPteEe~k~R~~kr~~eeGK~~V~Pe~Av 106 (226)
++..+.+.-.......|+|-||...-.|+.-+.-| .+++-.-|=++.++++..++-..+-.....+ . +++++
T Consensus 282 ~~~d~~~~v~~~GgvaI~DatN~t~~rR~~~~~~~~~~~~~~~~~vifle~vc~~~~~i~~ni~r~~~~~~~-~-~e~~~ 359 (664)
T PTZ00322 282 IAHDMTTFICKTDGVAVLDGTNTTHARRMALLRAIRETGLIRMTRVVFVEVVNNNSETIRRNVLRAKEMFPG-A-PEDFV 359 (664)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHcCCCccCcEEEEEEeCCCHHHHHHHHHHHHhcCCC-C-HHHHH
Confidence 33334444444577999999999976554423333 2345455555677766666555554455555 4 77887
Q ss_pred HHHHhcc
Q psy7609 107 LEMKANF 113 (226)
Q Consensus 107 leMKAnF 113 (226)
.+++.-+
T Consensus 360 ~~~~~~~ 366 (664)
T PTZ00322 360 DRYYEVI 366 (664)
T ss_pred HHHHHHH
Confidence 7666444
No 38
>TIGR01128 holA DNA polymerase III, delta subunit. subunit around DNA forming a DNA sliding clamp.
Probab=44.98 E-value=1.2e+02 Score=26.15 Aligned_cols=77 Identities=13% Similarity=0.149 Sum_probs=46.5
Q ss_pred HHHHHHhhhcCCC-cEEEeccCCChHHHhhhhccccCcceEEEEEe--CChHHHHHHHHHHHHhcCCCCCCChHHHHHHH
Q psy7609 34 LNRLLELGFSRRR-NYILDQTNVYVSAQKRKMRSYFGFQRKAIVVV--PTNEDYLARLEMHREKEGKDDVPPDNVILEMK 110 (226)
Q Consensus 34 LnrLi~iAarrrR-NYILDQTNVy~sAqRRKM~~F~GFqRKAVVVv--PteEe~k~R~~kr~~eeGK~~V~Pe~AvleMK 110 (226)
++.|++....-+- +++|=-|| -.+.+++.-+.|+.+.+-.++-| |+..++.+.+.+...+.|.. | ..+|+..+-
T Consensus 64 ~~~L~~~l~~~~~~~~~i~~~~-~~~~~~~~~k~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~g~~-i-~~~a~~~l~ 140 (302)
T TIGR01128 64 LKALEEYLANPPPDTLLLIEAP-KLDKRKKLTKWLKALKNAQIVECKTPKEQELPRWIQARLKKLGLR-I-DPDAVQLLA 140 (302)
T ss_pred HHHHHHHHhcCCCCEEEEEecC-CCCHhHHHHHHHHHhcCeeEEEecCCCHHHHHHHHHHHHHHcCCC-C-CHHHHHHHH
Confidence 4445555544333 34443444 22333333345665544444445 67788999999999999999 9 888887764
Q ss_pred hcc
Q psy7609 111 ANF 113 (226)
Q Consensus 111 AnF 113 (226)
..+
T Consensus 141 ~~~ 143 (302)
T TIGR01128 141 ELV 143 (302)
T ss_pred HHh
Confidence 433
No 39
>PRK14530 adenylate kinase; Provisional
Probab=43.35 E-value=1.5e+02 Score=24.96 Aligned_cols=105 Identities=16% Similarity=0.223 Sum_probs=53.3
Q ss_pred HHHHHHhhhcCCCcEEEeccCCCh-HHHhhhhccccCcceEEEEEeCChHHHHHHHHHHHHhcCCCCCCChHHHHHHHhc
Q psy7609 34 LNRLLELGFSRRRNYILDQTNVYV-SAQKRKMRSYFGFQRKAIVVVPTNEDYLARLEMHREKEGKDDVPPDNVILEMKAN 112 (226)
Q Consensus 34 LnrLi~iAarrrRNYILDQTNVy~-sAqRRKM~~F~GFqRKAVVVvPteEe~k~R~~kr~~eeGK~~V~Pe~AvleMKAn 112 (226)
+..++.-+.....+||||= ... -.|..-|.-... --.+|++-.+++.+.+|+.+|..-.+.. ...--.
T Consensus 71 ~~~~l~~~l~~~~~~IldG--~pr~~~q~~~l~~~~~-~d~vI~Ld~~~~~l~~Rl~~R~~~~~~g--------~~~~~~ 139 (215)
T PRK14530 71 VNEIVEEALSDADGFVLDG--YPRNLEQAEYLESITD-LDVVLYLDVSEEELVDRLTGRRVCPDCG--------ANYHVE 139 (215)
T ss_pred HHHHHHHHHhcCCCEEEcC--CCCCHHHHHHHHHhcC-CCEEEEEeCCHHHHHHHHhCCCcCcccC--------CccccC
Confidence 4455555544567999993 222 234444432222 2346777788889999998875322211 001113
Q ss_pred cccCCCCCCCc----eeeeccC-ChHHHHHHHHHHHHhcccC
Q psy7609 113 FKLPEVGELFE----EVTYIEL-QHPEAEKIIDEYNKNADGT 149 (226)
Q Consensus 113 FsLP~~~e~fd----EV~fvEL-~~eeA~klV~kYn~E~r~~ 149 (226)
|..|...+..+ ...-..- .+|..++.+..|.++....
T Consensus 140 ~~~p~~~~~~~~~~~rl~~R~dD~~e~i~~Rl~~y~~~~~~v 181 (215)
T PRK14530 140 FNQPEEEGVCDECGGELIQRDDDTEETVRERLDVFEENTEPV 181 (215)
T ss_pred CCCCcccccCcccCCcccCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 44554433333 1112222 2445677777787755443
No 40
>PRK01184 hypothetical protein; Provisional
Probab=43.04 E-value=1.8e+02 Score=23.51 Aligned_cols=94 Identities=15% Similarity=0.085 Sum_probs=46.6
Q ss_pred CCCcEEEeccCCChHHHhhhhccccCcceEEEEEeCChHHHHHHHHHHHHhcCCCCCCChHHHHHHHhc---cccCCCCC
Q psy7609 44 RRRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVVVPTNEDYLARLEMHREKEGKDDVPPDNVILEMKAN---FKLPEVGE 120 (226)
Q Consensus 44 rrRNYILDQTNVy~sAqRRKM~~F~GFqRKAVVVvPteEe~k~R~~kr~~eeGK~~V~Pe~AvleMKAn---FsLP~~~e 120 (226)
....||+|.+ ..-.+..-++-..+-.-..|+|..+++...+|+..|...+ +.. ..+.+....++ +.+++.-.
T Consensus 79 ~~~~vvidg~--r~~~e~~~~~~~~~~~~~~i~v~~~~~~~~~Rl~~R~~~~--d~~-~~~~~~~r~~~q~~~~~~~~~~ 153 (184)
T PRK01184 79 GDEVVVIDGV--RGDAEVEYFRKEFPEDFILIAIHAPPEVRFERLKKRGRSD--DPK-SWEELEERDERELSWGIGEVIA 153 (184)
T ss_pred CCCcEEEeCC--CCHHHHHHHHHhCCcccEEEEEECCHHHHHHHHHHcCCCC--Chh-hHHHHHHHHHHHhccCHHHHHH
Confidence 4578999975 2222222222111111146777788888999998875321 102 23334444333 44444433
Q ss_pred CCceeeeccCChHHHHHHHHHH
Q psy7609 121 LFEEVTYIELQHPEAEKIIDEY 142 (226)
Q Consensus 121 ~fdEV~fvEL~~eeA~klV~kY 142 (226)
.-|-|+.-.-..++..+-|+++
T Consensus 154 ~ad~vI~N~~~~~~l~~~v~~~ 175 (184)
T PRK01184 154 LADYMIVNDSTLEEFRARVRKL 175 (184)
T ss_pred hcCEEEeCCCCHHHHHHHHHHH
Confidence 3344444444455554444444
No 41
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=40.35 E-value=1.9e+02 Score=23.13 Aligned_cols=49 Identities=6% Similarity=0.121 Sum_probs=30.5
Q ss_pred HHhhhcCCCcEEEeccCCChHHHhhhhccccCcceEEEEEeCChHHHHHHHHHH
Q psy7609 38 LELGFSRRRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVVVPTNEDYLARLEMH 91 (226)
Q Consensus 38 i~iAarrrRNYILDQTNVy~sAqRRKM~~F~GFqRKAVVVvPteEe~k~R~~kr 91 (226)
+..+....++.|+|-.... ...-++.|..+ ..|.+.++.|.+.+|+..|
T Consensus 83 i~~~~~~g~~vv~~g~~~~---~~~~~~~~~~~--~~i~l~~~~~~~~~Rl~~R 131 (179)
T TIGR02322 83 IDQWLEAGDVVVVNGSRAV---LPEARQRYPNL--LVVNITASPDVLAQRLAAR 131 (179)
T ss_pred HHHHHhcCCEEEEECCHHH---HHHHHHHCCCc--EEEEEECCHHHHHHHHHHc
Confidence 3344557788999865332 22222234433 4566778999999999977
No 42
>PF11181 YflT: Heat induced stress protein YflT
Probab=40.00 E-value=29 Score=26.66 Aligned_cols=73 Identities=22% Similarity=0.295 Sum_probs=49.7
Q ss_pred cCcceEEEEEeCChHHHHHHHHHHHHhcCCCCCCChHHHHHHHhccccCCCCCCCceeeeccCChHHHHHHHHHH
Q psy7609 68 FGFQRKAIVVVPTNEDYLARLEMHREKEGKDDVPPDNVILEMKANFKLPEVGELFEEVTYIELQHPEAEKIIDEY 142 (226)
Q Consensus 68 ~GFqRKAVVVvPteEe~k~R~~kr~~eeGK~~V~Pe~AvleMKAnFsLP~~~e~fdEV~fvEL~~eeA~klV~kY 142 (226)
.||...-|.||-.+.+...++...+....-. ....+-+..||..|+ ....+.-+...=..|+++||...-+..
T Consensus 22 ~Gy~~ddI~Vva~d~~~~~~l~~~t~~~~~~-~~~~~~~d~~~~~f~-~~~d~~~~~l~~lGl~~~ea~~y~~~l 94 (103)
T PF11181_consen 22 QGYSEDDIYVVAKDKDRTERLADQTDTNTVG-ASEESFWDKIKNFFT-SGGDELRSKLESLGLSEDEAERYEEEL 94 (103)
T ss_pred cCCCcccEEEEEcCchHHHHHHHhcCCceec-cccccHHHHHHHhcc-CCcHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 7999999999999999999998887544333 214677888888888 222232333334567778776654443
No 43
>PF05236 TAF4: Transcription initiation factor TFIID component TAF4 family; InterPro: IPR007900 Accurate transcription initiation at protein-coding genes by RNA polymerase II requires the assembly of a multiprotein complex around the mRNA start site. Transcription factor TFIID is one of the general factors involved in this process. Yeast TFIID comprises the TATA binding protein and 14 TBP-associated factors (TAFIIs), nine of which contain histone-fold domains (IPR007124 from INTERPRO). The C-terminal region of the TFIID-specific yeast TAF4 (yTAF4) containing the HFD shares strong sequence similarity with Drosophila (d)TAF4 and human TAF4. A structure/function analysis of yTAF4 demonstrates that the HFD, a short conserved C-terminal domain (CCTD), and the region separating them are all required for yTAF4 function. This region of similarity is found in Transcription initiation factor TFIID component TAF4 []. ; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_C.
Probab=38.30 E-value=25 Score=31.34 Aligned_cols=46 Identities=15% Similarity=0.181 Sum_probs=8.7
Q ss_pred HHHHHHHHH-----HHHHHHHhhhcCCCcEEEeccCCChHHHhhhhccccC
Q psy7609 24 VQVVDKTTK-----CLNRLLELGFSRRRNYILDQTNVYVSAQKRKMRSYFG 69 (226)
Q Consensus 24 d~L~~~a~k-----cLnrLi~iAarrrRNYILDQTNVy~sAqRRKM~~F~G 69 (226)
-.|+..|++ ++.+++.+|-.|..++..|..-+-.|-=++.|+.++.
T Consensus 70 l~llS~A~e~rLr~lie~~~~~s~hR~~~~~~~~~~~~~sdv~~qlr~l~~ 120 (264)
T PF05236_consen 70 LELLSLATEERLRNLIEKAIVLSRHRRDSSKSDPRYEIRSDVRKQLRFLEQ 120 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCcccccchHHHHHHHHHHH
Confidence 345555555 3677778888888888877766667777888887754
No 44
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=38.01 E-value=77 Score=32.05 Aligned_cols=45 Identities=16% Similarity=0.330 Sum_probs=32.9
Q ss_pred CCChHHHHHHHhccccCCC--C--CCCceeeeccCChHHHHHHHHHHHH
Q psy7609 100 VPPDNVILEMKANFKLPEV--G--ELFEEVTYIELQHPEAEKIIDEYNK 144 (226)
Q Consensus 100 V~Pe~AvleMKAnFsLP~~--~--e~fdEV~fvEL~~eeA~klV~kYn~ 144 (226)
|.|-+-|--+--.--||.. + +.||.-.|+|++++.|.++++.++.
T Consensus 499 ~~~~~~~~~i~~~~~~~~~~ig~i~i~~~~s~v~~~~~~~~~~~~~~~~ 547 (629)
T PRK11634 499 VEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHFTR 547 (629)
T ss_pred CCHHHHHHHHHhhcCCChhhCCcEEEeCCceEEEcChhhHHHHHHHhcc
Confidence 4255544444444446654 3 8999999999999999999999964
No 45
>PRK14000 potassium-transporting ATPase subunit C; Provisional
Probab=35.41 E-value=44 Score=29.59 Aligned_cols=57 Identities=18% Similarity=0.331 Sum_probs=37.9
Q ss_pred eCChHHHHHHHHHHHHhcCCCCCCChHHHHHHHhccccCCCCCCCc---eeee-----------ccCChHHHHHHHHHHH
Q psy7609 78 VPTNEDYLARLEMHREKEGKDDVPPDNVILEMKANFKLPEVGELFE---EVTY-----------IELQHPEAEKIIDEYN 143 (226)
Q Consensus 78 vPteEe~k~R~~kr~~eeGK~~V~Pe~AvleMKAnFsLP~~~e~fd---EV~f-----------vEL~~eeA~klV~kYn 143 (226)
=|+..+|.+|++++.+.++++ | |.++|-. .+..+| -+.+ ..|++++-++||+++-
T Consensus 95 ~psn~~l~~~v~~r~~~~~~~-v-P~DlvTa---------SgSGLDPhISp~aA~~Qv~RVA~argls~~~v~~LV~~~t 163 (185)
T PRK14000 95 GNSNPELKKRVQETIKQEGKK-I-SSDAVTA---------SGSGLDPDITVDNAKQQVKRIAKERNIDASKINHLIDENK 163 (185)
T ss_pred CCCCHHHHHHHHHHHHHcCCC-C-CHHHHhc---------ccccCCCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHhc
Confidence 378889999999998877777 9 8777632 122222 1111 2355778888888876
Q ss_pred Hh
Q psy7609 144 KN 145 (226)
Q Consensus 144 ~E 145 (226)
+.
T Consensus 164 ~~ 165 (185)
T PRK14000 164 QA 165 (185)
T ss_pred cC
Confidence 64
No 46
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=34.63 E-value=2e+02 Score=23.53 Aligned_cols=62 Identities=16% Similarity=0.133 Sum_probs=41.7
Q ss_pred EEEEEeCChHHHHHHHHHHHHhcCCCCCCChHHHHHHHhccccCCCCCCCceeeeccCChHHHHHHHH
Q psy7609 73 KAIVVVPTNEDYLARLEMHREKEGKDDVPPDNVILEMKANFKLPEVGELFEEVTYIELQHPEAEKIID 140 (226)
Q Consensus 73 KAVVVvPteEe~k~R~~kr~~eeGK~~V~Pe~AvleMKAnFsLP~~~e~fdEV~fvEL~~eeA~klV~ 140 (226)
..|+|-.+++...+|+.+|. |.. ++++...|......-+.....|-|+.-.-+.|+..+-|+
T Consensus 126 ~vv~V~~~~~~~~~Rl~~R~---~~s---~~~~~~r~~~q~~~~~~~~~ad~vI~N~~~~e~l~~~~~ 187 (188)
T TIGR00152 126 RVIVVDVSPQLQLERLMQRD---NLT---EEEVQKRLASQMDIEERLARADDVIDNSATLADLVKQLE 187 (188)
T ss_pred EEEEEECCHHHHHHHHHHcC---CCC---HHHHHHHHHhcCCHHHHHHhCCEEEECCCCHHHHHHHHh
Confidence 45777778888999999876 433 677777777764333333557777777777777665543
No 47
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=34.06 E-value=1.3e+02 Score=25.27 Aligned_cols=83 Identities=17% Similarity=0.165 Sum_probs=46.6
Q ss_pred CcEEEeccCCChHHHhhhhccccCcceEEEEEeCChHHHHHHHHHHHHhcCCCCCCChHHHHHHHhccccCCCCCCCcee
Q psy7609 46 RNYILDQTNVYVSAQKRKMRSYFGFQRKAIVVVPTNEDYLARLEMHREKEGKDDVPPDNVILEMKANFKLPEVGELFEEV 125 (226)
Q Consensus 46 RNYILDQTNVy~sAqRRKM~~F~GFqRKAVVVvPteEe~k~R~~kr~~eeGK~~V~Pe~AvleMKAnFsLP~~~e~fdEV 125 (226)
...|+|-.=.|-+. -++ +--..|+|.++++...+|+.+| +|-. ++++...+.+-++..+.....|-|
T Consensus 107 ~~vv~e~pll~e~~-~~~------~~D~vi~V~a~~e~~~~Rl~~R---~~~s---~e~~~~ri~~Q~~~~~~~~~ad~v 173 (194)
T PRK00081 107 PYVVLDIPLLFENG-LEK------LVDRVLVVDAPPETQLERLMAR---DGLS---EEEAEAIIASQMPREEKLARADDV 173 (194)
T ss_pred CEEEEEehHhhcCC-chh------hCCeEEEEECCHHHHHHHHHHc---CCCC---HHHHHHHHHHhCCHHHHHHhCCEE
Confidence 56777865544421 111 1135567777788899999887 3333 566666666544433333556666
Q ss_pred eeccCChHHHHHHHHH
Q psy7609 126 TYIELQHPEAEKIIDE 141 (226)
Q Consensus 126 ~fvEL~~eeA~klV~k 141 (226)
+--.-+.++...-|.+
T Consensus 174 I~N~g~~e~l~~qv~~ 189 (194)
T PRK00081 174 IDNNGDLEELRKQVER 189 (194)
T ss_pred EECCCCHHHHHHHHHH
Confidence 6555455554444443
No 48
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=34.05 E-value=2.7e+02 Score=26.13 Aligned_cols=70 Identities=10% Similarity=0.070 Sum_probs=53.3
Q ss_pred HHHHHHHHH------HHHHHHhhhcCCCcEEEeccCCChHHHhhhhccccCcceEEEEEeCChHHHHHHHHHHHHhc
Q psy7609 25 QVVDKTTKC------LNRLLELGFSRRRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVVVPTNEDYLARLEMHREKE 95 (226)
Q Consensus 25 ~L~~~a~kc------LnrLi~iAarrrRNYILDQTNVy~sAqRRKM~~F~GFqRKAVVVvPteEe~k~R~~kr~~ee 95 (226)
.|.+-..+| +..+|+.|..+..|-||.=++..+.=-+.++....+ ...-++.++++|.+++|...|....
T Consensus 164 ~l~g~~~~~~~v~~gi~~~I~~~~~~g~s~IiEGvhl~P~~i~~~~~~~~~-~i~~~l~i~~ee~h~~RF~~R~~~~ 239 (301)
T PRK04220 164 VIYGFERHVEPVSVGVEAVIERALKEGISVIIEGVHIVPGFIKEKYLENPN-VFMFVLTLSDEEAHKARFYARARVS 239 (301)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhCCcEEEecCCCCHHHHHHhhhcCCC-EEEEEEEECCHHHHHHHHHHHHhhh
Confidence 455556666 999999999999999999999998765543332222 2445666789999999999888766
No 49
>KOG0234|consensus
Probab=33.47 E-value=1.4e+02 Score=29.82 Aligned_cols=87 Identities=20% Similarity=0.184 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHhhh-cCCCcEEEeccCCChHHHhhhhcccc---CcceEEEEEeCChHHHHHHHHHHH-----HhcC
Q psy7609 26 VVDKTTKCLNRLLELGF-SRRRNYILDQTNVYVSAQKRKMRSYF---GFQRKAIVVVPTNEDYLARLEMHR-----EKEG 96 (226)
Q Consensus 26 L~~~a~kcLnrLi~iAa-rrrRNYILDQTNVy~sAqRRKM~~F~---GFqRKAVVVvPteEe~k~R~~kr~-----~eeG 96 (226)
--+.|..+++.++.--. ...-+=|.|-||....-|++-+..++ +|+-=-|=.+.+|+++..+..+-. .-.|
T Consensus 92 r~~~a~~~l~D~~~~l~~~~g~vai~Datnttr~rrk~i~~~~~~~~~~kv~FiEs~c~D~~ii~~NI~~~~~~spdy~~ 171 (438)
T KOG0234|consen 92 RKQLALLALNDLLHFLIKENGQVAIFDATNTTRERRKRIIDFAEREAGFKVFFIESVCNDPNLINNNIREVKHVSPDYKG 171 (438)
T ss_pred hHHHHHHHhhhHHHHhhccCCceEEecCCCCCHHHHHHHHHHHhhcCCceEEEEEeecCCchhHHhhhhhhhhcCCCcCC
Confidence 33455667888887666 58889999999999999999888884 566666778899999888777621 1125
Q ss_pred CCCCCChHHHHHHHhcccc
Q psy7609 97 KDDVPPDNVILEMKANFKL 115 (226)
Q Consensus 97 K~~V~Pe~AvleMKAnFsL 115 (226)
++ +++|+.+.......
T Consensus 172 ~~---~e~a~~dfl~ri~~ 187 (438)
T KOG0234|consen 172 KD---QEEALKDFLKRIRN 187 (438)
T ss_pred CC---HHHHHHHHHHHHHh
Confidence 55 89999988877443
No 50
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=32.58 E-value=2.3e+02 Score=23.20 Aligned_cols=67 Identities=16% Similarity=0.068 Sum_probs=38.9
Q ss_pred EEEEeCChHHHHHHHHHHH-HhcCCCCCCChHHHHHHHhccc------cCCCCCCCceeeeccCChHHHHHHHHHHH
Q psy7609 74 AIVVVPTNEDYLARLEMHR-EKEGKDDVPPDNVILEMKANFK------LPEVGELFEEVTYIELQHPEAEKIIDEYN 143 (226)
Q Consensus 74 AVVVvPteEe~k~R~~kr~-~eeGK~~V~Pe~AvleMKAnFs------LP~~~e~fdEV~fvEL~~eeA~klV~kYn 143 (226)
.|.|.++.+....|..+|. .+-|.. +++++..+..... +....+..|-|+...-...+|.+++.+-+
T Consensus 122 ~i~v~~~~~~~~~R~~~Rd~~~rg~~---~~~~~~~~~~~~~~~~~~~i~~~~~~aD~ii~~~~~~~~~~~~~~~~~ 195 (198)
T cd02023 122 KIFVDTDADVRLIRRIERDIVERGRD---LESVINQYLKFVKPMHEQFIEPTKRYADVIIPRGGDNHVAIDLIVQHI 195 (198)
T ss_pred EEEEECChhHHHHHHHHHHhhhcCCC---HHHHHHHHHHhhhhhHHHhCccchhceeEEECCCCCccHHHHHHHHHH
Confidence 4555555555444444443 455655 6676666543332 23344557777776666668999888544
No 51
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=32.37 E-value=30 Score=25.14 Aligned_cols=43 Identities=19% Similarity=0.509 Sum_probs=30.9
Q ss_pred ChHHHHHHHhccccCCCC----CCCceeeeccCChHHHHHHHHHHHH
Q psy7609 102 PDNVILEMKANFKLPEVG----ELFEEVTYIELQHPEAEKIIDEYNK 144 (226)
Q Consensus 102 Pe~AvleMKAnFsLP~~~----e~fdEV~fvEL~~eeA~klV~kYn~ 144 (226)
|-+.+--+.....+|... +.+|.-.|+|++++.|.++++..+.
T Consensus 15 ~~~iv~~i~~~~gi~~~~IG~I~I~~~~S~vev~~~~a~~v~~~l~~ 61 (74)
T PF03880_consen 15 PRDIVGAICNEAGIPGRDIGRIDIFDNFSFVEVPEEVAEKVLEALNG 61 (74)
T ss_dssp HHHHHHHHHTCTTB-GGGEEEEEE-SS-EEEEE-TT-HHHHHHHHTT
T ss_pred HHHHHHHHHhccCCCHHhEEEEEEeeeEEEEEECHHHHHHHHHHhcC
Confidence 666666666677888764 8899999999999999999999874
No 52
>PHA01513 mnt Mnt
Probab=31.29 E-value=98 Score=24.22 Aligned_cols=41 Identities=7% Similarity=0.182 Sum_probs=36.1
Q ss_pred eCChHHHHHHHHHHHHhcCCCCCCChHHHHHHHhccccCCCCC
Q psy7609 78 VPTNEDYLARLEMHREKEGKDDVPPDNVILEMKANFKLPEVGE 120 (226)
Q Consensus 78 vPteEe~k~R~~kr~~eeGK~~V~Pe~AvleMKAnFsLP~~~e 120 (226)
+--+++++.|+..+.+.+|-. + -.+++.-+.+.+.-|...+
T Consensus 10 LRLP~eLk~rL~~aA~~nGRS-m-NaeIv~~Le~al~~~~~~~ 50 (82)
T PHA01513 10 LRLPYELKEKLKQRAKANGRS-L-NAELVQIVQDALSKPSPVT 50 (82)
T ss_pred eeCCHHHHHHHHHHHHHhCCC-H-HHHHHHHHHHHhcCCCcch
Confidence 445789999999999999999 9 9999999999998886653
No 53
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.94 E-value=2.9e+02 Score=24.81 Aligned_cols=77 Identities=17% Similarity=0.245 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHhhhcCCCcEEEeccCCChHHHhhhhc--cccCcceEE-EEEeCChHHHHHHHHHHHHhcCCCCCCChHH
Q psy7609 29 KTTKCLNRLLELGFSRRRNYILDQTNVYVSAQKRKMR--SYFGFQRKA-IVVVPTNEDYLARLEMHREKEGKDDVPPDNV 105 (226)
Q Consensus 29 ~a~kcLnrLi~iAarrrRNYILDQTNVy~sAqRRKM~--~F~GFqRKA-VVVvPteEe~k~R~~kr~~eeGK~~V~Pe~A 105 (226)
+|.+-.-..+..+.+.-+-|+..-| .+...-++-|+ -=.||.--- .+++++.|=-.+|...|..+.|-+ | ||+.
T Consensus 53 ~A~r~ai~~i~~~I~~~~~F~~ETt-LS~~s~~~~ik~Ak~~Gf~I~L~y~~i~~~elavERVk~RVa~GGH~-I-pED~ 129 (187)
T COG4185 53 QAARVAIDRIARLIDLGRPFIAETT-LSGPSILELIKTAKAAGFYIVLNYIVIDSVELAVERVKLRVAKGGHD-I-PEDK 129 (187)
T ss_pred HHHHHHHHHHHHHHHcCCCcceEEe-eccchHHHHHHHHHhCCeEEEEEEEEeCcHHHHHHHHHHHHhcCCCC-C-cHHH
Confidence 4555556677888888999998854 55554444444 236777544 455677777899999999999999 9 9988
Q ss_pred HHH
Q psy7609 106 ILE 108 (226)
Q Consensus 106 vle 108 (226)
|..
T Consensus 130 Ir~ 132 (187)
T COG4185 130 IRR 132 (187)
T ss_pred HHH
Confidence 754
No 54
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=29.62 E-value=1.5e+02 Score=25.34 Aligned_cols=64 Identities=9% Similarity=0.115 Sum_probs=41.4
Q ss_pred EEEEEeCChHHHHHHHHHHHHhcCCCCCCChHHHHHHHhccccCCCCCCCceeeeccCChHHHHHHHHHH
Q psy7609 73 KAIVVVPTNEDYLARLEMHREKEGKDDVPPDNVILEMKANFKLPEVGELFEEVTYIELQHPEAEKIIDEY 142 (226)
Q Consensus 73 KAVVVvPteEe~k~R~~kr~~eeGK~~V~Pe~AvleMKAnFsLP~~~e~fdEV~fvEL~~eeA~klV~kY 142 (226)
..|+|-.++|...+|+.+| +|-. .++|...+.+-.++-+..+..|-|+.-+-+.++-.+-|++.
T Consensus 124 ~vi~V~a~~e~r~~RL~~R---~g~s---~e~a~~ri~~Q~~~~~k~~~aD~vI~N~~~~~~l~~~v~~l 187 (196)
T PRK14732 124 ATVTVDSDPEESILRTISR---DGMK---KEDVLARIASQLPITEKLKRADYIVRNDGNREGLKEECKIL 187 (196)
T ss_pred EEEEEECCHHHHHHHHHHc---CCCC---HHHHHHHHHHcCCHHHHHHhCCEEEECCCCHHHHHHHHHHH
Confidence 3455666667788888888 4545 67888888775433333467777777766666655555544
No 55
>PF06144 DNA_pol3_delta: DNA polymerase III, delta subunit; InterPro: IPR010372 DNA polymerase III, delta subunit (2.7.7.7 from EC) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction []. The delta subunit is also known as HolA.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3GLG_F 1XXH_A 1JQL_B 3GLF_F 1JQJ_C 3GLI_F.
Probab=28.21 E-value=74 Score=25.13 Aligned_cols=73 Identities=14% Similarity=0.224 Sum_probs=43.3
Q ss_pred HHHHHHHhhhc-CCCcEEEeccCCChHHHhhhhccccCcceEEEEE---eCChHHHHHHHHHHHHhcCCCCCCChHHHHH
Q psy7609 33 CLNRLLELGFS-RRRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVV---VPTNEDYLARLEMHREKEGKDDVPPDNVILE 108 (226)
Q Consensus 33 cLnrLi~iAar-rrRNYILDQTNVy~sAqRRKM~~F~GFqRKAVVV---vPteEe~k~R~~kr~~eeGK~~V~Pe~Avle 108 (226)
....|++.... ..-++||-.++--.+.+++ .|+-+.+.|.|+ .|++.++.+=++++..+.|.. + ..+|+..
T Consensus 77 ~~~~l~~~l~~~~~~~~lii~~~~~~~~~~k---~~k~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~-i-~~~a~~~ 151 (172)
T PF06144_consen 77 EIKALIEYLSNPPPDCILIIFSEEKLDKRKK---LYKALKKQAIVIECKKPKEQELPRWIKERAKKNGLK-I-DPDAAQY 151 (172)
T ss_dssp HHHHHHHHTTT--SSEEEEEEES-S--HHHH---HHHHHTTTEEEEEE----TTTHHHHHHHHHHHTT-E-E--HHHHHH
T ss_pred HHHHHHHHHhCCCCCEEEEEEeCCchhhhhh---HHHHHhcccceEEecCCCHHHHHHHHHHHHHHcCCC-C-CHHHHHH
Confidence 45556666655 4566677666623333333 455555455544 678889999999999999999 8 7777776
Q ss_pred HH
Q psy7609 109 MK 110 (226)
Q Consensus 109 MK 110 (226)
+-
T Consensus 152 L~ 153 (172)
T PF06144_consen 152 LI 153 (172)
T ss_dssp HH
T ss_pred HH
Confidence 63
No 56
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=25.77 E-value=1.7e+02 Score=22.02 Aligned_cols=58 Identities=12% Similarity=0.210 Sum_probs=34.6
Q ss_pred CCcEEEeccCCChHHHhhhhccccCcceEEEEEeCChHHHHHHHHHHHHhcCCCCCCChHHHHHHHh
Q psy7609 45 RRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVVVPTNEDYLARLEMHREKEGKDDVPPDNVILEMKA 111 (226)
Q Consensus 45 rRNYILDQTNVy~sAqRRKM~~F~GFqRKAVVVvPteEe~k~R~~kr~~eeGK~~V~Pe~AvleMKA 111 (226)
..|+|||-... .. ..+.. ....|++..+.+...+|+.++..+.+.. ++|++|...|+.
T Consensus 65 ~~~~Vidg~~~-~~------~~~~~-~~~~i~l~~~~~~r~~R~~~r~~~~~~~-~~~~~~~~~~~~ 122 (147)
T cd02020 65 KPGIVLEGRDI-GT------VVFPD-ADLKIFLTASPEVRAKRRAKQLQAKGEG-VDLEEILAEIIE 122 (147)
T ss_pred CCCEEEEeeee-ee------EEcCC-CCEEEEEECCHHHHHHHHHHHHHhCCCC-CCHHHHHHHHHH
Confidence 46899995321 11 01221 2355777777777889998887443334 657776666554
No 57
>PF01715 IPPT: IPP transferase; InterPro: IPR002627 tRNA isopentenyltransferases 2.5.1.8 from EC also known as tRNA delta(2)-isopentenylpyrophosphate transferases or IPP transferases. These enzymes modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37) [].; GO: 0005524 ATP binding, 0008033 tRNA processing; PDB: 2ZXU_A 3FOZ_A 2ZM5_B 3D3Q_A 3EXA_B 2QGN_A 3A8T_A 3EPK_B 3EPH_A 3EPJ_A ....
Probab=24.91 E-value=63 Score=28.89 Aligned_cols=48 Identities=15% Similarity=0.084 Sum_probs=37.5
Q ss_pred EEeccCCChHHHhhhhccccCcceEEEEEeCChHHHHHHHHHHHHhcC
Q psy7609 49 ILDQTNVYVSAQKRKMRSYFGFQRKAIVVVPTNEDYLARLEMHREKEG 96 (226)
Q Consensus 49 ILDQTNVy~sAqRRKM~~F~GFqRKAVVVvPteEe~k~R~~kr~~eeG 96 (226)
|...|+...|...++-..-..|....+++.++-++|.+|+.+|.+++=
T Consensus 131 i~~~tG~~~s~~~~~~~~~~~~~~~~i~L~~~r~~L~~RI~~Rvd~Ml 178 (253)
T PF01715_consen 131 IYELTGKPPSEWQKKQKPPPRYDFLVIGLDRDREELYERINKRVDEML 178 (253)
T ss_dssp HHHHHSS-HHHHHHCHHHCBSSEEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCChhHhhhcccccccCCeEEEEeCCCHHHHHHHHHHHHHHHH
Confidence 456788888888877333346778899999999999999999998653
No 58
>KOG0921|consensus
Probab=24.69 E-value=57 Score=35.88 Aligned_cols=20 Identities=20% Similarity=0.454 Sum_probs=15.7
Q ss_pred CChHHHHHHHhccccCCCCC
Q psy7609 101 PPDNVILEMKANFKLPEVGE 120 (226)
Q Consensus 101 ~Pe~AvleMKAnFsLP~~~e 120 (226)
|+.+-|++|...+|-|+..+
T Consensus 1124 pvnarllnmiRdIs~pSAa~ 1143 (1282)
T KOG0921|consen 1124 PVNARLLNMIRDISRPSAAD 1143 (1282)
T ss_pred chhHHHHHHHHHhccccccc
Confidence 46777889998888888753
No 59
>PHA01547 putative internal virion protein A
Probab=24.24 E-value=44 Score=29.88 Aligned_cols=23 Identities=39% Similarity=0.400 Sum_probs=17.1
Q ss_pred cCccccccCCCCcccCCCCCccc
Q psy7609 162 QGYGYSTTGQTGTTGQTGQSTQG 184 (226)
Q Consensus 162 ~g~g~~~~g~~~~~~~~~~~~~~ 184 (226)
=|++.|+|--|||+||+|-.--|
T Consensus 172 FGs~gs~S~~GG~~~qsGvavAG 194 (206)
T PHA01547 172 FGSFGSTSTTGGTYGQSGVAVAG 194 (206)
T ss_pred cCCCCCccccCCCCCCCCccccc
Confidence 36777788888899998865544
No 60
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=24.20 E-value=4.2e+02 Score=22.01 Aligned_cols=76 Identities=16% Similarity=0.262 Sum_probs=48.4
Q ss_pred CCcEEEeccCCChHHHhhhhc-cccCcceEEEEEeCChHHHHHHHHHHHHhcCCCCCCChHHHHHHHhccccCCCCCCCc
Q psy7609 45 RRNYILDQTNVYVSAQKRKMR-SYFGFQRKAIVVVPTNEDYLARLEMHREKEGKDDVPPDNVILEMKANFKLPEVGELFE 123 (226)
Q Consensus 45 rRNYILDQTNVy~sAqRRKM~-~F~GFqRKAVVVvPteEe~k~R~~kr~~eeGK~~V~Pe~AvleMKAnFsLP~~~e~fd 123 (226)
+..+|+ -|+ +..+.|..++ ....| .-|.+-.+++.+++|+.+|. |.. + +.+.+..-.+.|..|..+| .
T Consensus 76 ~~g~iv-~s~-~~~~~R~~~r~~~~~~--~~v~l~a~~~~l~~Rl~~R~---~~~-~-~~~vl~~Q~~~~e~~~~~e--~ 144 (176)
T PRK09825 76 ETGFIV-CSS-LKKQYRDILRKSSPNV--HFLWLDGDYETILARMQRRA---GHF-M-PPDLLQSQFDALERPCADE--H 144 (176)
T ss_pred CCEEEE-EEe-cCHHHHHHHHhhCCCE--EEEEEeCCHHHHHHHHhccc---CCC-C-CHHHHHHHHHHcCCCCCCc--C
Confidence 456666 454 4554444443 22222 34555568899999999996 344 6 8888888889899887765 2
Q ss_pred eeeeccCC
Q psy7609 124 EVTYIELQ 131 (226)
Q Consensus 124 EV~fvEL~ 131 (226)
+++-++-.
T Consensus 145 ~~~~~d~~ 152 (176)
T PRK09825 145 DIARIDVN 152 (176)
T ss_pred CeEEEECC
Confidence 35444444
No 61
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=24.08 E-value=2.5e+02 Score=22.38 Aligned_cols=59 Identities=19% Similarity=0.220 Sum_probs=36.2
Q ss_pred HHHHHHhhhc---CCCcEEEeccCCChHHHhhhhccccC---cceEEEEEeCChHHHHHHHHHHHH
Q psy7609 34 LNRLLELGFS---RRRNYILDQTNVYVSAQKRKMRSYFG---FQRKAIVVVPTNEDYLARLEMHRE 93 (226)
Q Consensus 34 LnrLi~iAar---rrRNYILDQTNVy~sAqRRKM~~F~G---FqRKAVVVvPteEe~k~R~~kr~~ 93 (226)
+..++.-+.. ..+.||||-.-- ..+|..-+.-... .--.+|++-.+++.+.+|+.+|..
T Consensus 63 ~~~l~~~~l~~~~~~~~~vldg~Pr-~~~q~~~l~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~~ 127 (194)
T cd01428 63 VIKLLKERLKKPDCKKGFILDGFPR-TVDQAEALDELLDEGIKPDKVIELDVPDEVLIERILGRRI 127 (194)
T ss_pred HHHHHHHHHhcccccCCEEEeCCCC-CHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCc
Confidence 3445554444 368899996422 2234333332222 345678888899999999998863
No 62
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=24.03 E-value=3.7e+02 Score=21.28 Aligned_cols=54 Identities=13% Similarity=0.201 Sum_probs=30.6
Q ss_pred hcCCCcEEEeccCCChHHHhhhhccccCcceEEEEEeCChHHHHHHHHHHHHhcC
Q psy7609 42 FSRRRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVVVPTNEDYLARLEMHREKEG 96 (226)
Q Consensus 42 arrrRNYILDQTNVy~sAqRRKM~~F~GFqRKAVVVvPteEe~k~R~~kr~~eeG 96 (226)
.....+||||-..-. -.|...+......--..|++-.+++.+.+|+.+|....+
T Consensus 79 ~~~~~~~i~dg~~~~-~~q~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~ 132 (188)
T TIGR01360 79 LGTSKGFLIDGYPRE-VKQGEEFERRIGPPTLVLYFDCSEDTMVKRLLKRAETSG 132 (188)
T ss_pred cCcCCeEEEeCCCCC-HHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcccccCC
Confidence 446789999963211 122222221111223466667778889999998874333
No 63
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=24.01 E-value=3.8e+02 Score=23.41 Aligned_cols=32 Identities=28% Similarity=0.361 Sum_probs=25.4
Q ss_pred CChHHHHHHHHHHHHhcCCCCCCChHHHHHHHhc
Q psy7609 79 PTNEDYLARLEMHREKEGKDDVPPDNVILEMKAN 112 (226)
Q Consensus 79 PteEe~k~R~~kr~~eeGK~~V~Pe~AvleMKAn 112 (226)
|+++++...+.+....+|.. + +++|+..+-..
T Consensus 184 ~~~~~~~~~l~~~~~~~~~~-~-~~~al~~l~~~ 215 (337)
T PRK12402 184 PTDDELVDVLESIAEAEGVD-Y-DDDGLELIAYY 215 (337)
T ss_pred CCHHHHHHHHHHHHHHcCCC-C-CHHHHHHHHHH
Confidence 77888999999988889988 8 77777665543
No 64
>PRK02496 adk adenylate kinase; Provisional
Probab=23.25 E-value=3.1e+02 Score=22.18 Aligned_cols=65 Identities=15% Similarity=0.171 Sum_probs=35.1
Q ss_pred CCcEEEecc--CCCh-HHHhhhhccccCcceEEEEEeCChHHHHHHHHHHHHhcCCCCCCChHHHHHHHhccc
Q psy7609 45 RRNYILDQT--NVYV-SAQKRKMRSYFGFQRKAIVVVPTNEDYLARLEMHREKEGKDDVPPDNVILEMKANFK 114 (226)
Q Consensus 45 rRNYILDQT--NVy~-sAqRRKM~~F~GFqRKAVVVvPteEe~k~R~~kr~~eeGK~~V~Pe~AvleMKAnFs 114 (226)
.+.||||=. |+-- .+-..-+..+...--.+|++-++++....|+..|... .+ +++++.+..+.|.
T Consensus 79 ~~g~vldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~--dd---~~~~~~~r~~~y~ 146 (184)
T PRK02496 79 ANGWILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERLLARGRK--DD---TEEVIRRRLEVYR 146 (184)
T ss_pred cCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcCCCC--CC---CHHHHHHHHHHHH
Confidence 478999942 2211 1111112222222345788888899999999988421 12 4455555554443
No 65
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=23.06 E-value=1.3e+02 Score=24.58 Aligned_cols=22 Identities=23% Similarity=0.212 Sum_probs=14.9
Q ss_pred CCceeeeccCChHHHHHHHHHHHH
Q psy7609 121 LFEEVTYIELQHPEAEKIIDEYNK 144 (226)
Q Consensus 121 ~fdEV~fvEL~~eeA~klV~kYn~ 144 (226)
.|-=|+|. ..|+|+..|+.+|.
T Consensus 77 GfaFV~F~--~~e~A~~Al~~lng 98 (144)
T PLN03134 77 GFGFVNFN--DEGAATAAISEMDG 98 (144)
T ss_pred eEEEEEEC--CHHHHHHHHHHcCC
Confidence 34445555 35889999988864
No 66
>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm
Probab=22.98 E-value=46 Score=27.02 Aligned_cols=30 Identities=20% Similarity=0.178 Sum_probs=23.2
Q ss_pred EEec-cCCChHHHhhhhccccCcceEEEEEe
Q psy7609 49 ILDQ-TNVYVSAQKRKMRSYFGFQRKAIVVV 78 (226)
Q Consensus 49 ILDQ-TNVy~sAqRRKM~~F~GFqRKAVVVv 78 (226)
|+|+ .|+..++-|+.++....+.+.||.|+
T Consensus 6 ~~d~~~~~~g~~~r~~~~~~~~~~~~~v~v~ 36 (165)
T cd02885 6 LVDEDDNPIGTAEKLEAHLKGTLLHRAFSVF 36 (165)
T ss_pred EECCCCCCccccCHHHHhhcCCcceeEEEEE
Confidence 6777 89999999999998888845554443
No 67
>PTZ00280 Actin-related protein 3; Provisional
Probab=22.94 E-value=1.7e+02 Score=27.43 Aligned_cols=60 Identities=8% Similarity=0.148 Sum_probs=41.2
Q ss_pred chhHHHHHHHHHHHHHHHHhhhcCCCcEEEeccCCChHHHhhhhc--cccCcceEEEEEeCCh
Q psy7609 21 GSWVQVVDKTTKCLNRLLELGFSRRRNYILDQTNVYVSAQKRKMR--SYFGFQRKAIVVVPTN 81 (226)
Q Consensus 21 grwd~L~~~a~kcLnrLi~iAarrrRNYILDQTNVy~sAqRRKM~--~F~GFqRKAVVVvPte 81 (226)
-.||.+-..-..++.+.+.+-+....-.|.+.+ ..+..+|.||. .|+-|+-++|.+++..
T Consensus 79 ~dwd~~e~l~~~~~~~~L~~~p~~~~vllte~~-~~~~~~Re~l~e~lFE~~~~p~i~~~~~~ 140 (414)
T PTZ00280 79 EDWDLMEKFWEQCIFKYLRCEPEEHYFILTEPP-MNPPENREYTAEIMFETFNVKGLYIAVQA 140 (414)
T ss_pred CCHHHHHHHHHHHHHHhhccCCCCCceEEeeCC-CCcHHHHHHHHHHHhhccCCCeEEEecCH
Confidence 458888887777776666665554444444444 34666788886 8899999998887554
No 68
>PF14791 DNA_pol_B_thumb: DNA polymerase beta thumb ; PDB: 1HUZ_A 3K75_D 1HUO_A 2BPC_A 1RPL_A 1NOM_A 1ZQX_A 1ZQU_A 1ZQZ_A 1ZQV_A ....
Probab=22.42 E-value=73 Score=23.19 Aligned_cols=44 Identities=20% Similarity=0.269 Sum_probs=29.4
Q ss_pred HHHHHHHHHhhhcCCCcEEEeccCCChHHHhhhhccccCcceEEEEEeCChHHHHHH
Q psy7609 31 TKCLNRLLELGFSRRRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVVVPTNEDYLAR 87 (226)
Q Consensus 31 ~kcLnrLi~iAarrrRNYILDQTNVy~sAqRRKM~~F~GFqRKAVVVvPteEe~k~R 87 (226)
++.+|+-|...|+++ +|.||+-=++..+. ..+|=|++|+|+=+-
T Consensus 8 s~~fnr~lR~~A~~~-g~~L~~~Gl~~~~~------------~~~~~~~~E~dif~~ 51 (64)
T PF14791_consen 8 SKEFNRDLRQYAKKK-GMKLSEYGLFKRET------------GELVPVESEEDIFDA 51 (64)
T ss_dssp -HHHHHHHHHHHHHT-TEEEESSEEEETTC------------EEEEE-SSHHHHHHH
T ss_pred CHHHHHHHHHHHHHc-CCeeCccccccccc------------ceeecCCCHHHHHHH
Confidence 566788887777777 99999976665322 237778888876543
No 69
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=20.92 E-value=3.2e+02 Score=23.63 Aligned_cols=29 Identities=24% Similarity=0.387 Sum_probs=23.3
Q ss_pred CChHHHHHHHHHHHHhcCCCCCCChHHHHHH
Q psy7609 79 PTNEDYLARLEMHREKEGKDDVPPDNVILEM 109 (226)
Q Consensus 79 PteEe~k~R~~kr~~eeGK~~V~Pe~AvleM 109 (226)
++++|+...+......+|.. + +++|+..+
T Consensus 161 l~~~ei~~~l~~~~~~~~~~-i-~~~al~~l 189 (319)
T PRK00440 161 LKKEAVAERLRYIAENEGIE-I-TDDALEAI 189 (319)
T ss_pred CCHHHHHHHHHHHHHHcCCC-C-CHHHHHHH
Confidence 56888999999988889988 8 77776655
No 70
>KOG0921|consensus
Probab=20.86 E-value=87 Score=34.58 Aligned_cols=25 Identities=16% Similarity=0.131 Sum_probs=16.0
Q ss_pred eEEEEEeCChHHHHHHHHHHHHhcCC
Q psy7609 72 RKAIVVVPTNEDYLARLEMHREKEGK 97 (226)
Q Consensus 72 RKAVVVvPteEe~k~R~~kr~~eeGK 97 (226)
+|-|-+||.---+.- -.++.+.+|.
T Consensus 1053 ~K~MslVsPLQLLLF-~SrKVqsdgq 1077 (1282)
T KOG0921|consen 1053 CKQMSLVSPLQLLLF-GSRKVQSDGQ 1077 (1282)
T ss_pred ccCccccChHHHhhh-hhhhccccCc
Confidence 566778887665443 3456667777
No 71
>KOG3293|consensus
Probab=20.27 E-value=2.3e+02 Score=24.06 Aligned_cols=15 Identities=13% Similarity=0.421 Sum_probs=9.7
Q ss_pred ceeeeccCChHHHHH
Q psy7609 123 EEVTYIELQHPEAEK 137 (226)
Q Consensus 123 dEV~fvEL~~eeA~k 137 (226)
.-|-|+-++.+--.+
T Consensus 64 ttIkylri~d~iid~ 78 (134)
T KOG3293|consen 64 TTIKYLRIPDEIIDK 78 (134)
T ss_pred ceeEEEeccHHHHHH
Confidence 357888888664333
No 72
>COG4907 Predicted membrane protein [Function unknown]
Probab=20.26 E-value=66 Score=32.83 Aligned_cols=11 Identities=18% Similarity=0.459 Sum_probs=6.1
Q ss_pred HHHHHHHHHHH
Q psy7609 134 EAEKIIDEYNK 144 (226)
Q Consensus 134 eA~klV~kYn~ 144 (226)
-+.|.|+.|+.
T Consensus 524 V~dkVvkam~~ 534 (595)
T COG4907 524 VSDKVVKAMRK 534 (595)
T ss_pred cHHHHHHHHHH
Confidence 35556666654
No 73
>PRK14527 adenylate kinase; Provisional
Probab=20.22 E-value=4.9e+02 Score=21.32 Aligned_cols=50 Identities=20% Similarity=0.288 Sum_probs=28.9
Q ss_pred CcEEEeccCCCh-HHHhhhhc-cc--cCcceEE-EEEeCChHHHHHHHHHHHHhcCC
Q psy7609 46 RNYILDQTNVYV-SAQKRKMR-SY--FGFQRKA-IVVVPTNEDYLARLEMHREKEGK 97 (226)
Q Consensus 46 RNYILDQTNVy~-sAqRRKM~-~F--~GFqRKA-VVVvPteEe~k~R~~kr~~eeGK 97 (226)
.+||||= ... .+|+.-+. .+ .|..-.. |.+-.+++.+.+|+.+|....|.
T Consensus 84 ~~~VlDG--fpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r 138 (191)
T PRK14527 84 VRVIFDG--FPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELIRRIVERARQEGR 138 (191)
T ss_pred CcEEEcC--CCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcCcccCCC
Confidence 5799994 222 34443332 11 2333333 34457888999999998754444
Done!