Query psy7609
Match_columns 226
No_of_seqs 85 out of 87
Neff 3.5
Searched_HMMs 29240
Date Fri Aug 16 22:43:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7609.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7609hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zvl_A Bifunctional polynucleo 98.6 1.4E-07 4.7E-12 85.6 9.0 105 38-143 302-414 (416)
2 1ly1_A Polynucleotide kinase; 96.2 0.008 2.7E-07 45.6 5.7 78 36-119 66-149 (181)
3 1ltq_A Polynucleotide kinase; 93.4 0.22 7.5E-06 41.5 7.3 77 34-116 64-146 (301)
4 3t61_A Gluconokinase; PSI-biol 92.3 1.1 3.8E-05 35.0 9.6 105 43-154 84-189 (202)
5 3a4m_A L-seryl-tRNA(SEC) kinas 91.7 2.8 9.5E-05 34.8 11.8 73 38-118 66-141 (260)
6 2axn_A 6-phosphofructo-2-kinas 91.2 0.87 3E-05 42.7 9.2 82 31-113 104-191 (520)
7 1gvn_B Zeta; postsegregational 90.7 0.99 3.4E-05 38.6 8.3 74 34-109 99-181 (287)
8 2ze6_A Isopentenyl transferase 88.6 1.1 3.7E-05 37.5 6.8 72 42-118 87-165 (253)
9 3lw7_A Adenylate kinase relate 87.7 1.6 5.3E-05 32.0 6.5 95 43-141 76-172 (179)
10 2rhm_A Putative kinase; P-loop 85.2 4.4 0.00015 30.8 8.0 61 32-93 64-127 (193)
11 2p5t_B PEZT; postsegregational 83.9 6 0.00021 32.5 8.9 64 31-94 95-160 (253)
12 4eun_A Thermoresistant glucoki 81.6 17 0.00058 28.4 12.6 93 42-142 98-190 (200)
13 3a00_A Guanylate kinase, GMP k 81.0 4.9 0.00017 31.3 6.9 92 38-141 85-180 (186)
14 1ex7_A Guanylate kinase; subst 80.4 2.5 8.6E-05 34.6 5.3 91 38-141 85-180 (186)
15 2qor_A Guanylate kinase; phosp 79.7 6.9 0.00024 30.8 7.5 89 41-140 99-191 (204)
16 1s96_A Guanylate kinase, GMP k 78.0 11 0.00037 31.0 8.5 89 41-142 104-194 (219)
17 3lnc_A Guanylate kinase, GMP k 76.5 3.6 0.00012 32.9 5.0 61 76-143 146-206 (231)
18 1knq_A Gluconate kinase; ALFA/ 75.8 23 0.00078 26.6 11.9 92 43-141 78-169 (175)
19 3tr0_A Guanylate kinase, GMP k 75.5 14 0.00048 28.3 8.0 90 41-142 93-183 (205)
20 1qhx_A CPT, protein (chloramph 73.3 15 0.00053 27.5 7.6 53 39-91 80-133 (178)
21 4gp7_A Metallophosphoesterase; 68.7 8.5 0.00029 29.7 5.3 97 35-137 63-164 (171)
22 2vli_A Antibiotic resistance p 68.1 35 0.0012 25.5 9.9 89 44-142 76-168 (183)
23 1tev_A UMP-CMP kinase; ploop, 64.6 41 0.0014 25.0 10.4 57 42-98 83-141 (196)
24 1qf9_A UMP/CMP kinase, protein 58.9 53 0.0018 24.4 9.6 49 44-93 82-133 (194)
25 1bif_A 6-phosphofructo-2-kinas 55.0 31 0.001 31.2 7.1 68 43-111 121-193 (469)
26 2kpt_A Putative secreted prote 50.2 18 0.00062 28.7 4.3 83 45-142 13-108 (148)
27 3tau_A Guanylate kinase, GMP k 44.2 17 0.00058 28.8 3.3 91 38-141 92-184 (208)
28 2bwj_A Adenylate kinase 5; pho 43.5 1E+02 0.0035 23.1 8.1 49 43-92 89-137 (199)
29 2j41_A Guanylate kinase; GMP, 41.9 82 0.0028 23.8 6.8 89 41-141 93-182 (207)
30 2c95_A Adenylate kinase 1; tra 41.9 1.1E+02 0.0037 22.9 9.4 59 34-93 77-135 (196)
31 4dth_A VGRG protein; alpha-bet 39.2 13 0.00046 34.3 2.1 54 162-216 153-210 (396)
32 4dey_A Voltage-dependent L-typ 37.9 47 0.0016 30.3 5.5 105 30-147 215-326 (337)
33 2bdt_A BH3686; alpha-beta prot 37.6 1.3E+02 0.0045 22.7 7.7 56 41-98 69-129 (189)
34 2if2_A Dephospho-COA kinase; a 37.1 1.4E+02 0.0047 22.8 7.8 83 46-142 106-188 (204)
35 1kjw_A Postsynaptic density pr 33.6 51 0.0017 28.5 4.8 90 38-143 187-279 (295)
36 3tvt_A Disks large 1 tumor sup 33.0 28 0.00095 30.4 3.1 89 38-141 182-272 (292)
37 2kw7_A Conserved domain protei 30.5 71 0.0024 24.8 4.8 47 46-92 18-75 (157)
38 3dl0_A Adenylate kinase; phosp 30.0 1.1E+02 0.0038 23.6 5.9 46 45-91 78-127 (216)
39 2pk2_A Cyclin-T1, protein TAT; 30.0 11 0.00038 33.8 0.0 15 78-92 150-164 (358)
40 2f6r_A COA synthase, bifunctio 27.5 2.7E+02 0.0091 23.2 9.8 89 45-146 181-273 (281)
41 2jeo_A Uridine-cytidine kinase 27.1 97 0.0033 24.9 5.2 58 44-111 133-191 (245)
42 3pvh_A UPF0603 protein AT1G547 25.1 35 0.0012 26.8 2.1 47 45-91 14-72 (153)
43 3sr0_A Adenylate kinase; phosp 24.9 2E+02 0.0069 23.2 6.8 103 34-149 64-172 (206)
44 1sxj_E Activator 1 40 kDa subu 24.9 1.2E+02 0.004 25.2 5.5 65 43-109 133-222 (354)
45 4i1u_A Dephospho-COA kinase; s 24.6 1.4E+02 0.0047 24.8 5.8 86 47-144 114-204 (210)
46 2pfc_A Hypothetical protein RV 23.6 8.2 0.00028 33.0 -1.9 52 74-127 15-78 (183)
47 2j6b_A AFV3-109; sulfolobus, c 23.6 39 0.0014 26.5 2.1 31 112-142 7-37 (109)
48 1z6g_A Guanylate kinase; struc 22.9 1.4E+02 0.0047 23.8 5.4 88 44-144 113-206 (218)
49 2plr_A DTMP kinase, probable t 22.9 2.2E+02 0.0075 21.3 6.2 56 37-92 78-144 (213)
50 3fb4_A Adenylate kinase; psych 22.8 2E+02 0.0068 22.1 6.1 46 45-91 78-127 (216)
51 3g1w_A Sugar ABC transporter; 22.7 2E+02 0.0067 22.9 6.2 49 35-83 24-73 (305)
52 2pk2_A Cyclin-T1, protein TAT; 22.2 19 0.00064 32.3 0.0 10 135-144 238-247 (358)
53 3l6u_A ABC-type sugar transpor 21.9 2.6E+02 0.0088 22.0 6.7 50 34-83 27-76 (293)
54 1vcs_A Vesicle transport throu 21.2 58 0.002 24.3 2.6 22 128-149 43-64 (102)
55 3onj_A T-snare VTI1; helix, HA 20.1 33 0.0011 25.5 1.0 22 129-150 40-61 (97)
No 1
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=98.59 E-value=1.4e-07 Score=85.61 Aligned_cols=105 Identities=17% Similarity=0.299 Sum_probs=85.9
Q ss_pred HHhhhcCCCcEEEeccCCChHHHhhhhccc--cCcceEEEEEeCChHHHHHHHHHHHHhcCC-CCCCChHHHHHHHhccc
Q psy7609 38 LELGFSRRRNYILDQTNVYVSAQKRKMRSY--FGFQRKAIVVVPTNEDYLARLEMHREKEGK-DDVPPDNVILEMKANFK 114 (226)
Q Consensus 38 i~iAarrrRNYILDQTNVy~sAqRRKM~~F--~GFqRKAVVVvPteEe~k~R~~kr~~eeGK-~~V~Pe~AvleMKAnFs 114 (226)
+..+....+++|||-||.....|..-+..+ .|+....|++-++.|++.+|+.+|....+. ..+ |++++..|.+.|-
T Consensus 302 ~~~~l~~g~~vIiD~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~R~~~~~~~~~~-~~~~~~~~~~~~e 380 (416)
T 3zvl_A 302 CQAALRQGKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFREMTDPSHAPV-SDMVMFSYRKQFE 380 (416)
T ss_dssp HHHHHHTTCCEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCCHHHHHHHHHHHHHHCTTCCCC-CHHHHHHHHHHCC
T ss_pred HHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCCHHHHHHHHHhhcccCCCcCCC-CHHHHHHHHHhcC
Confidence 334445789999999999887776665555 366677888888999999999999875443 137 9999999999999
Q ss_pred cCCCCCCCceeeeccCCh-----HHHHHHHHHHH
Q psy7609 115 LPEVGELFEEVTYIELQH-----PEAEKIIDEYN 143 (226)
Q Consensus 115 LP~~~e~fdEV~fvEL~~-----eeA~klV~kYn 143 (226)
.|...|.||+|.++.+.. +++.++.+.|+
T Consensus 381 ~P~~~E~fd~v~~v~~~~~~f~~~~~~~l~~~~~ 414 (416)
T 3zvl_A 381 PPTLAEGFLEILEIPFRLQEHLDPALQRLYRQFS 414 (416)
T ss_dssp CCCGGGTCSEEEEECCCCCTTCCHHHHHHHTSCC
T ss_pred CCCcccCCcEEEEEecccccccCHHHHHHHHHhh
Confidence 999999999999999765 48999998887
No 2
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.22 E-value=0.008 Score=45.59 Aligned_cols=78 Identities=14% Similarity=0.100 Sum_probs=56.4
Q ss_pred HHHHhhh---cCCCcEEEeccCCChHHHhhhhc-cc--cCcceEEEEEeCChHHHHHHHHHHHHhcCCCCCCChHHHHHH
Q psy7609 36 RLLELGF---SRRRNYILDQTNVYVSAQKRKMR-SY--FGFQRKAIVVVPTNEDYLARLEMHREKEGKDDVPPDNVILEM 109 (226)
Q Consensus 36 rLi~iAa---rrrRNYILDQTNVy~sAqRRKM~-~F--~GFqRKAVVVvPteEe~k~R~~kr~~eeGK~~V~Pe~AvleM 109 (226)
.++.-+. ...+++|||-+|.... ++..+. .+ .|+.-..|.+-++.|++.+|+.+|.. .. + |++.+..|
T Consensus 66 ~~~~~~l~~~~~g~~vi~d~~~~~~~-~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~---~~-~-~~~~i~~~ 139 (181)
T 1ly1_A 66 DTAKSILYGGDSVKGVIISDTNLNPE-RRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGT---KA-V-PIDVLRSM 139 (181)
T ss_dssp HHHHHHHTSCSSCCEEEECSCCCSHH-HHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTTCGG---GC-C-CHHHHHHH
T ss_pred HHHHHHHhhccCCCeEEEeCCCCCHH-HHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHhcccc---CC-C-CHHHHHHH
Confidence 3444444 6789999999998764 444443 22 34555677788899999999988753 34 7 99999999
Q ss_pred HhccccCCCC
Q psy7609 110 KANFKLPEVG 119 (226)
Q Consensus 110 KAnFsLP~~~ 119 (226)
.+.|.-|...
T Consensus 140 ~~~~~~~~~~ 149 (181)
T 1ly1_A 140 YKSMREYLGL 149 (181)
T ss_dssp HHHHHHHHTC
T ss_pred HHHhhccCCC
Confidence 9999888543
No 3
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.42 E-value=0.22 Score=41.47 Aligned_cols=77 Identities=14% Similarity=0.176 Sum_probs=54.4
Q ss_pred HHHHHHhhh---cCCCcEEEeccCCChHHHhhhhccc---cCcceEEEEEeCChHHHHHHHHHHHHhcCCCCCCChHHHH
Q psy7609 34 LNRLLELGF---SRRRNYILDQTNVYVSAQKRKMRSY---FGFQRKAIVVVPTNEDYLARLEMHREKEGKDDVPPDNVIL 107 (226)
Q Consensus 34 LnrLi~iAa---rrrRNYILDQTNVy~sAqRRKM~~F---~GFqRKAVVVvPteEe~k~R~~kr~~eeGK~~V~Pe~Avl 107 (226)
+..++..+. ...+++|||-+|.... +|..+... .|+.-..|.+-++.|++.+|+.+|.. .. + |++.+.
T Consensus 64 ~~~~~~~~l~~~~~g~~vi~d~~~~~~~-~~~~l~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~---~~-~-~~e~i~ 137 (301)
T 1ltq_A 64 QFDTAKSILYGGDSVKGVIISDTNLNPE-RRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSKRGT---KA-V-PIDVLR 137 (301)
T ss_dssp HHHHHHHHTTSCTTCCEEEECSCCCCHH-HHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHCGG---GC-C-CHHHHH
T ss_pred HHHHHHHHHhhccCCCEEEEeCCCCCHH-HHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHHhccC---CC-C-CHHHHH
Confidence 334455555 6788999999998754 44444422 25555677778899999999988752 45 7 899999
Q ss_pred HHHhccccC
Q psy7609 108 EMKANFKLP 116 (226)
Q Consensus 108 eMKAnFsLP 116 (226)
.|-+.|.-|
T Consensus 138 ~~~~~~~~~ 146 (301)
T 1ltq_A 138 SMYKSMREY 146 (301)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhcc
Confidence 988777544
No 4
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=92.33 E-value=1.1 Score=35.02 Aligned_cols=105 Identities=10% Similarity=0.098 Sum_probs=64.8
Q ss_pred cCCCcEEEeccCCChHHHhhhhccccCcceEEEEEeCChHHHHHHHHHHHHhcCCCCCCChHHHHHHHhccccCCCCCCC
Q psy7609 43 SRRRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVVVPTNEDYLARLEMHREKEGKDDVPPDNVILEMKANFKLPEVGELF 122 (226)
Q Consensus 43 rrrRNYILDQTNVy~sAqRRKM~~F~GFqRKAVVVvPteEe~k~R~~kr~~eeGK~~V~Pe~AvleMKAnFsLP~~~e~f 122 (226)
...+++|||.++..... +..+....+..-..|++-++.|++.+|+.+|. +.. . +.+.+....+.+.-|...+ -
T Consensus 84 ~~~~~vivd~~~~~~~~-~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~---~~~-~-~~~~~~~~~~~~~~~~~~~-~ 156 (202)
T 3t61_A 84 ASREPVVVSCSALKRSY-RDKLRESAPGGLAFVFLHGSESVLAERMHHRT---GHF-M-PSSLLQTQLETLEDPRGEV-R 156 (202)
T ss_dssp TSSSCCEEECCCCSHHH-HHHHHHTSTTCCEEEEEECCHHHHHHHHHHHH---SSC-C-CHHHHHHHHHHCCCCTTST-T
T ss_pred hcCCCEEEECCCCCHHH-HHHHHHhcCCCeEEEEEeCCHHHHHHHHHHhh---ccC-C-CHHHHHHHHHhcCCCCCCC-C
Confidence 56789999988765544 44444433433466777788999999999876 233 4 6777777777776553322 2
Q ss_pred ceeeeccCChHH-HHHHHHHHHHhcccCCCCCC
Q psy7609 123 EEVTYIELQHPE-AEKIIDEYNKNADGTYNYPQ 154 (226)
Q Consensus 123 dEV~fvEL~~ee-A~klV~kYn~E~r~~~p~~~ 154 (226)
+-++-...+.++ +.++++..++.+=..-||.+
T Consensus 157 ~~~Id~~~~~~e~~~~I~~~l~~~~~~~~~~~~ 189 (202)
T 3t61_A 157 TVAVDVAQPLAEIVREALAGLARLAENLYFQSH 189 (202)
T ss_dssp EEEEESSSCHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred eEEEeCCCCHHHHHHHHHHHHHHhhhcceeecc
Confidence 333444455555 55555666666655544443
No 5
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=91.70 E-value=2.8 Score=34.82 Aligned_cols=73 Identities=21% Similarity=0.302 Sum_probs=50.7
Q ss_pred HHhhhcCCCcEEEeccCCChHHHhhhhccc---cCcceEEEEEeCChHHHHHHHHHHHHhcCCCCCCChHHHHHHHhccc
Q psy7609 38 LELGFSRRRNYILDQTNVYVSAQKRKMRSY---FGFQRKAIVVVPTNEDYLARLEMHREKEGKDDVPPDNVILEMKANFK 114 (226)
Q Consensus 38 i~iAarrrRNYILDQTNVy~sAqRRKM~~F---~GFqRKAVVVvPteEe~k~R~~kr~~eeGK~~V~Pe~AvleMKAnFs 114 (226)
+..+... .++|||-||.+...+ ..+... .++.-..|.+-.+.|++.+|+.+|. .. + |++.+..|...|-
T Consensus 66 i~~~l~~-~~vIiD~~~~~~~~~-~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~~R~----~~-~-~~~~l~~~~~~~e 137 (260)
T 3a4m_A 66 IDSALKN-YWVIVDDTNYYNSMR-RDLINIAKKYNKNYAIIYLKASLDVLIRRNIERG----EK-I-PNEVIKKMYEKFD 137 (260)
T ss_dssp HHHHHTT-SEEEECSCCCSHHHH-HHHHHHHHHTTCEEEEEEEECCHHHHHHHHHHTT----CS-S-CHHHHHHHHHHCC
T ss_pred HHHHhhC-CEEEEeCCcccHHHH-HHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHhCC----CC-C-CHHHHHHHHHHhc
Confidence 3334445 899999988876544 444332 2344455666678899999998763 44 7 8899999998888
Q ss_pred cCCC
Q psy7609 115 LPEV 118 (226)
Q Consensus 115 LP~~ 118 (226)
-|..
T Consensus 138 ~~~~ 141 (260)
T 3a4m_A 138 EPGK 141 (260)
T ss_dssp CTTS
T ss_pred Cccc
Confidence 7764
No 6
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=91.23 E-value=0.87 Score=42.73 Aligned_cols=82 Identities=10% Similarity=-0.003 Sum_probs=51.3
Q ss_pred HHHHHHHHHhh-hcCCCcEEEeccCCChHHHhhhhcccc--CcceEEEEE-eCChHHHHHHHHHHHHh--cCCCCCCChH
Q psy7609 31 TKCLNRLLELG-FSRRRNYILDQTNVYVSAQKRKMRSYF--GFQRKAIVV-VPTNEDYLARLEMHREK--EGKDDVPPDN 104 (226)
Q Consensus 31 ~kcLnrLi~iA-arrrRNYILDQTNVy~sAqRRKM~~F~--GFqRKAVVV-vPteEe~k~R~~kr~~e--eGK~~V~Pe~ 104 (226)
..++..++... ....++.|||-||.....|..-+..+. |+.-..|.+ ||+++.+.+|+.++... +.+. .+|++
T Consensus 104 ~~~l~~~~~~L~~~~g~~VIvDat~~~~~~R~~~~~~a~~~g~~v~~l~~~~~d~e~i~~ri~~r~~~rPdl~~-~d~e~ 182 (520)
T 2axn_A 104 LAALRDVKSYLAKEGGQIAVFDATNTTRERRHMILHFAKENDFKAFFIESVCDDPTVVASNIMEVKISSPDYKD-CNSAE 182 (520)
T ss_dssp HHHHHHHHHHHHHSCCCEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHHHHHTTTSGGGTT-SCHHH
T ss_pred HHHHHHHHHHHHhcCCceEEecCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCChHHHHHHHHHhhhhcCCcccc-CCHHH
Confidence 34454444433 256789999999999887766555554 554334433 36688888999776532 3333 22788
Q ss_pred HHHHHHhcc
Q psy7609 105 VILEMKANF 113 (226)
Q Consensus 105 AvleMKAnF 113 (226)
++..|+..+
T Consensus 183 ~~~~~~~Ri 191 (520)
T 2axn_A 183 AMDDFMKRI 191 (520)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887775443
No 7
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=90.70 E-value=0.99 Score=38.64 Aligned_cols=74 Identities=11% Similarity=0.133 Sum_probs=47.5
Q ss_pred HHHHHHhhhcCCCcEEEeccCCChHHHhhhhccc--cCcceEEEEEeCChHHH----HHHHHHHHHhcC---CCCCCChH
Q psy7609 34 LNRLLELGFSRRRNYILDQTNVYVSAQKRKMRSY--FGFQRKAIVVVPTNEDY----LARLEMHREKEG---KDDVPPDN 104 (226)
Q Consensus 34 LnrLi~iAarrrRNYILDQTNVy~sAqRRKM~~F--~GFqRKAVVVvPteEe~----k~R~~kr~~eeG---K~~V~Pe~ 104 (226)
...+++.+....+|+|||-|+.-...+..-+..+ .||.-..+++..+.+.. .+|+.+|....| .. + |++
T Consensus 99 ~~~~v~~~l~~g~~vIld~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~p~~~~~l~~~~Rl~~R~~~g~l~~R~-~-~~e 176 (287)
T 1gvn_B 99 TEAIISRLSDQGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERYETMYADDPMTARA-T-PKQ 176 (287)
T ss_dssp HHHHHHHHHHHTCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHHHHHHHHHHHHHHHHHHCTTTCCC-C-CHH
T ss_pred HHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHhCCCcEEEEEEECCHHHHHHHHHHHHHHHHHhCCCCCCC-C-CHH
Confidence 3455666667789999998887665322222222 36665566666666666 899998887655 45 6 655
Q ss_pred HHHHH
Q psy7609 105 VILEM 109 (226)
Q Consensus 105 AvleM 109 (226)
+...+
T Consensus 177 ~~~~i 181 (287)
T 1gvn_B 177 AHDIV 181 (287)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55444
No 8
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=88.57 E-value=1.1 Score=37.46 Aligned_cols=72 Identities=14% Similarity=0.217 Sum_probs=49.4
Q ss_pred hcCCCcEEEec-cCCChHHHhhhhcc---ccCcceEEEEEeCCh-HHHHHHHHHHHHh--cCCCCCCChHHHHHHHhccc
Q psy7609 42 FSRRRNYILDQ-TNVYVSAQKRKMRS---YFGFQRKAIVVVPTN-EDYLARLEMHREK--EGKDDVPPDNVILEMKANFK 114 (226)
Q Consensus 42 arrrRNYILDQ-TNVy~sAqRRKM~~---F~GFqRKAVVVvPte-Ee~k~R~~kr~~e--eGK~~V~Pe~AvleMKAnFs 114 (226)
..+.++.|||. ++.|..+ .+.. ..+|.-..|.+-++. |++.+|+.+|.++ .+.+ + +++.+.++.+.|-
T Consensus 87 ~~~g~~vIl~gg~~~~~~~---~~~~~~~~~~~~~~~i~l~~~~~e~l~~Rl~~R~~~ml~~~~-~-~~~~l~e~~~~~~ 161 (253)
T 2ze6_A 87 RKSEEGLILEGGSISLLNC---MAKSPFWRSGFQWHVKRLRLGDSDAFLTRAKQRVAEMFAIRE-D-RPSLLEELAELWN 161 (253)
T ss_dssp TTTSSEEEEEECCHHHHHH---HHHCTTTTSSCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCS-S-SCCHHHHHHHHHT
T ss_pred HhCCCCeEEeccHHHHHHH---HHhcccccccCceEEEEecchhHHHHHHHHHHHHHHHHhcCc-c-cchHHHHHHHhcC
Confidence 34667889986 4433322 2222 145655555566665 9999999999877 4666 8 8888999999988
Q ss_pred cCCC
Q psy7609 115 LPEV 118 (226)
Q Consensus 115 LP~~ 118 (226)
.|..
T Consensus 162 ~p~~ 165 (253)
T 2ze6_A 162 YPAA 165 (253)
T ss_dssp STTH
T ss_pred Ccch
Confidence 8864
No 9
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=87.71 E-value=1.6 Score=32.01 Aligned_cols=95 Identities=12% Similarity=0.092 Sum_probs=54.7
Q ss_pred cCCCcEEEeccCCChHHHhhhhccccCcceEEEEEeCChHHHHHHHHHHHHhcCCCCCCChHHHHHHHh--ccccCCCCC
Q psy7609 43 SRRRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVVVPTNEDYLARLEMHREKEGKDDVPPDNVILEMKA--NFKLPEVGE 120 (226)
Q Consensus 43 rrrRNYILDQTNVy~sAqRRKM~~F~GFqRKAVVVvPteEe~k~R~~kr~~eeGK~~V~Pe~AvleMKA--nFsLP~~~e 120 (226)
....++|+|-. ....++..|+...+-.-..|.+-++.|.+.+|+.+|...+... - +++....+.. .+.++....
T Consensus 76 ~~~~~vi~dg~--~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~-~-~~~~~~r~~~~~~~~~~~~~~ 151 (179)
T 3lw7_A 76 SNHDLVVFDGV--RSLAEVEEFKRLLGDSVYIVAVHSPPKIRYKRMIERLRSDDSK-E-ISELIRRDREELKLGIGEVIA 151 (179)
T ss_dssp CCCSCEEEECC--CCHHHHHHHHHHHCSCEEEEEEECCHHHHHHHHHTCC----CC-C-HHHHHHHHHHHHHHTHHHHHH
T ss_pred cCCCeEEEeCC--CCHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhccCCCCcc-h-HHHHHHHHHhhhccChHhHHH
Confidence 56789999975 6666666666554433456667788899999999885433223 2 5666655533 222333323
Q ss_pred CCceeeeccCChHHHHHHHHH
Q psy7609 121 LFEEVTYIELQHPEAEKIIDE 141 (226)
Q Consensus 121 ~fdEV~fvEL~~eeA~klV~k 141 (226)
..|-|+-..-+.++..+-|.+
T Consensus 152 ~ad~vId~~~~~~~~~~~i~~ 172 (179)
T 3lw7_A 152 MADYIITNDSNYEEFKRRCEE 172 (179)
T ss_dssp TCSEEEECCSCHHHHHHHHHH
T ss_pred hCCEEEECCCCHHHHHHHHHH
Confidence 345555545455555444443
No 10
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=85.16 E-value=4.4 Score=30.76 Aligned_cols=61 Identities=13% Similarity=0.135 Sum_probs=37.8
Q ss_pred HHHHHHHHhhhcCCCcEEEeccCCChHHHhhhh---ccccCcceEEEEEeCChHHHHHHHHHHHH
Q psy7609 32 KCLNRLLELGFSRRRNYILDQTNVYVSAQKRKM---RSYFGFQRKAIVVVPTNEDYLARLEMHRE 93 (226)
Q Consensus 32 kcLnrLi~iAarrrRNYILDQTNVy~sAqRRKM---~~F~GFqRKAVVVvPteEe~k~R~~kr~~ 93 (226)
+.+..++..+.....+.|+|-+| ....+.+.+ ..-.++.-..|++-++.|++.+|+.+|..
T Consensus 64 ~~~~~~~~~~l~~g~~vi~d~~~-~~~~~~~~~~~l~~~~~~~~~~v~l~~~~e~~~~R~~~R~~ 127 (193)
T 2rhm_A 64 MMLYHTAATILQSGQSLIMESNF-RVDLDTERMQNLHTIAPFTPIQIRCVASGDVLVERILSRIA 127 (193)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECC-CHHHHHHHHHHHHHHSCCEEEEEEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCeEEEecCC-CCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHHHhcC
Confidence 33444555555678899999998 322222333 22123334566666788999999998864
No 11
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=83.85 E-value=6 Score=32.54 Aligned_cols=64 Identities=16% Similarity=0.120 Sum_probs=43.1
Q ss_pred HHHHHHHHHhhhcCCCcEEEeccCCChHHHhhhhccc--cCcceEEEEEeCChHHHHHHHHHHHHh
Q psy7609 31 TKCLNRLLELGFSRRRNYILDQTNVYVSAQKRKMRSY--FGFQRKAIVVVPTNEDYLARLEMHREK 94 (226)
Q Consensus 31 ~kcLnrLi~iAarrrRNYILDQTNVy~sAqRRKM~~F--~GFqRKAVVVvPteEe~k~R~~kr~~e 94 (226)
.+.+..+++.+.....|+|||-++.-...++.-++.+ .|+.-..|+|..+.|+..+|..+|..+
T Consensus 95 ~~~~~~~~~~~~~~g~~vVid~~~~~~~~~~~~~~~l~~~g~~v~lv~l~~~~e~~~~R~~~R~~~ 160 (253)
T 2p5t_B 95 GKMVESLVTKLSSLGYNLLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIATKPELSYLSTLIRYEE 160 (253)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHHHHHCCCcEEEEEEeCCHHHHHHHHHHHHHH
Confidence 3444556666666678999998765444333222233 577777777788899999999988754
No 12
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=81.57 E-value=17 Score=28.37 Aligned_cols=93 Identities=11% Similarity=0.017 Sum_probs=53.4
Q ss_pred hcCCCcEEEeccCCChHHHhhhhccccCcceEEEEEeCChHHHHHHHHHHHHhcCCCCCCChHHHHHHHhccccCCCCCC
Q psy7609 42 FSRRRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVVVPTNEDYLARLEMHREKEGKDDVPPDNVILEMKANFKLPEVGEL 121 (226)
Q Consensus 42 arrrRNYILDQTNVy~sAqRRKM~~F~GFqRKAVVVvPteEe~k~R~~kr~~eeGK~~V~Pe~AvleMKAnFsLP~~~e~ 121 (226)
.....+.|+|-+.... ..|..++-... .-..|.+-++.|++.+|+.+|. +.. . +.+.+..+.+.+..|...+
T Consensus 98 ~~~g~~viid~~~~~~-~~~~~l~~~~~-~~~vv~l~~~~e~l~~Rl~~R~---~~~-~-~~~~l~~~~~~~~~~~~~~- 169 (200)
T 4eun_A 98 ADAGVSTIITCSALKR-TYRDVLREGPP-SVDFLHLDGPAEVIKGRMSKRE---GHF-M-PASLLQSQLATLEALEPDE- 169 (200)
T ss_dssp HHTTCCEEEEECCCCH-HHHHHHTTSSS-CCEEEEEECCHHHHHHHHTTCS---CCS-S-CGGGHHHHHHHCCCCCTTS-
T ss_pred HhcCCCEEEEchhhhH-HHHHHHHHhCC-ceEEEEEeCCHHHHHHHHHhcc---cCC-C-CHHHHHHHHHHhCCCCCCC-
Confidence 3456899999875553 44444443211 1245667788899999997664 233 4 5566777776665443322
Q ss_pred CceeeeccCChHHHHHHHHHH
Q psy7609 122 FEEVTYIELQHPEAEKIIDEY 142 (226)
Q Consensus 122 fdEV~fvEL~~eeA~klV~kY 142 (226)
.+-++-...+.+++.+.|.++
T Consensus 170 ~~~~Id~~~~~~e~~~~I~~~ 190 (200)
T 4eun_A 170 SGIVLDLRQPPEQLIERALTW 190 (200)
T ss_dssp CEEEEETTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCHHHHHHHHHHH
Confidence 333333455666655444443
No 13
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=80.97 E-value=4.9 Score=31.27 Aligned_cols=92 Identities=16% Similarity=0.181 Sum_probs=37.0
Q ss_pred HHhhhcCCCcEEEeccCCChHHHhhhhccccCcceEEEEEeC-ChHHHHHHHHHHHHhcCCCCCCChHHHHH-HHhccc-
Q psy7609 38 LELGFSRRRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVVVP-TNEDYLARLEMHREKEGKDDVPPDNVILE-MKANFK- 114 (226)
Q Consensus 38 i~iAarrrRNYILDQTNVy~sAqRRKM~~F~GFqRKAVVVvP-teEe~k~R~~kr~~eeGK~~V~Pe~Avle-MKAnFs- 114 (226)
++-+....++.||| +++....+-++ ..++....|.|.| +.|++.+|+.+|-.+ +++.+.+ |...-.
T Consensus 85 i~~~l~~g~~~il~-~~~~g~~~l~~---~~~~~~~~i~i~~p~~~~l~~Rl~~Rg~~-------~~~~i~~rl~~~~~~ 153 (186)
T 3a00_A 85 VKQVSKSGKTCILD-IDMQGVKSVKA---IPELNARFLFIAPPSVEDLKKRLEGRGTE-------TEESINKRLSAAQAE 153 (186)
T ss_dssp HHHHHHTTCEEEEE-CCHHHHHHHHT---CGGGCCEEEEEECSCC-----------------------------------
T ss_pred HHHHHHcCCeEEEE-EcHHHHHHHHH---hcCCCeEEEEEECcCHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHH
Confidence 33444677899999 44555544333 2234445566666 559999999987532 2222222 221111
Q ss_pred cCCC-CCCCceeeeccCChHHHHHHHHH
Q psy7609 115 LPEV-GELFEEVTYIELQHPEAEKIIDE 141 (226)
Q Consensus 115 LP~~-~e~fdEV~fvEL~~eeA~klV~k 141 (226)
+... ...||-|+.-+ +.|+|.+-|..
T Consensus 154 ~~~~~~~~~d~vi~nd-~~~~a~~~l~~ 180 (186)
T 3a00_A 154 LAYAETGAHDKVIVND-DLDKAYKELKD 180 (186)
T ss_dssp -----CCCCSEEEECS-SHHHHHHHHHH
T ss_pred HHhhcccCCcEEEECc-CHHHHHHHHHH
Confidence 1001 25688777766 67777665544
No 14
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=80.40 E-value=2.5 Score=34.58 Aligned_cols=91 Identities=18% Similarity=0.265 Sum_probs=52.1
Q ss_pred HHhhhcCCCcEEEeccCCChHHHhhhhccccCcceEEEEE-eCChHHHHHHHHHHHHhcCCCCCCChHHHHH-HHh---c
Q psy7609 38 LELGFSRRRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVV-VPTNEDYLARLEMHREKEGKDDVPPDNVILE-MKA---N 112 (226)
Q Consensus 38 i~iAarrrRNYILDQTNVy~sAqRRKM~~F~GFqRKAVVV-vPteEe~k~R~~kr~~eeGK~~V~Pe~Avle-MKA---n 112 (226)
++.+....++.||| .++-+..+-++..+ +....|.| .|+.|+|++|+.+| |.+ .++.|.. |.+ .
T Consensus 85 v~~~l~~g~~vil~-id~~g~~~~k~~~~---~~~~~Ifi~pps~e~L~~RL~~R----g~e---~~e~i~~Rl~~a~~e 153 (186)
T 1ex7_A 85 VKQVSKSGKTCILD-IDMQGVKSVKAIPE---LNARFLFIAPPSVEDLKKRLEGR----GTE---TEESINKRLSAAQAE 153 (186)
T ss_dssp HHHHHHHTSEEEEE-CCHHHHHHHHTCGG---GCCEEEEEECSCHHHHHHHHHHH----CCS---CHHHHHHHHHHHHHH
T ss_pred eeehhhCCCEEEec-CCHHHHHHHHHhcc---cCceEEEEeCCCHHHHHHHHHhc----CCC---CHHHHHHHHHHHHHH
Confidence 44556678899999 45666555555433 33444544 55778999999887 445 4444433 221 1
Q ss_pred cccCCCCCCCceeeeccCChHHHHHHHHH
Q psy7609 113 FKLPEVGELFEEVTYIELQHPEAEKIIDE 141 (226)
Q Consensus 113 FsLP~~~e~fdEV~fvEL~~eeA~klV~k 141 (226)
+.... ...||-|+--+ +.|+|.+-|..
T Consensus 154 ~~~~~-~~~fD~vIvNd-dle~a~~~l~~ 180 (186)
T 1ex7_A 154 LAYAE-TGAHDKVIVND-DLDKAYKELKD 180 (186)
T ss_dssp HHHHT-TTCSSEEEECS-SHHHHHHHHHH
T ss_pred Hhhcc-ccCCcEEEECc-CHHHHHHHHHH
Confidence 21111 13488776544 56676665544
No 15
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=79.66 E-value=6.9 Score=30.76 Aligned_cols=89 Identities=15% Similarity=0.095 Sum_probs=44.1
Q ss_pred hhcCCCcEEEeccCCChHHHhhhhccccCcceEEEEEe-CChHHHHHHHHHHHHhcCCCCCCChHHHHH-HHhcc-ccCC
Q psy7609 41 GFSRRRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVVV-PTNEDYLARLEMHREKEGKDDVPPDNVILE-MKANF-KLPE 117 (226)
Q Consensus 41 AarrrRNYILDQTNVy~sAqRRKM~~F~GFqRKAVVVv-PteEe~k~R~~kr~~eeGK~~V~Pe~Avle-MKAnF-sLP~ 117 (226)
+....++.|+|- +.-...+.++ .|....-..|.|. |+.|++.+|+.+| |.+ +++.+.+ |.... -++.
T Consensus 99 ~l~~g~~vi~d~-~~~~~~~l~~--~~~~~~~~~i~l~~~s~e~l~~Rl~~R----~~~---~~~~i~~rl~~~~~~~~~ 168 (204)
T 2qor_A 99 AVGEGKICLFEM-NINGVKQLKE--SKHIQDGIYIFVKPPSIDILLGRLKNR----NTE---KPEEINKRMQELTREMDE 168 (204)
T ss_dssp HHHTTCEEEEEC-CHHHHHHHHH--CSSCSCCEEEEEECSCHHHHHHHHHTC----TTS---CHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCeEEEEE-CHHHHHHHHH--hcCCCCeEEEEEcCCCHHHHHHHHHHc----CCC---CHHHHHHHHHHHHHHHHH
Confidence 445788999993 1211111111 2211123455554 8999999999765 334 3444443 44321 1211
Q ss_pred -CCCCCceeeeccCChHHHHHHHH
Q psy7609 118 -VGELFEEVTYIELQHPEAEKIID 140 (226)
Q Consensus 118 -~~e~fdEV~fvEL~~eeA~klV~ 140 (226)
..+.||-|+--. +.|++.+-|.
T Consensus 169 ~~~~~~d~vi~n~-~~e~~~~~i~ 191 (204)
T 2qor_A 169 ADKVGFNYFIVND-DLARTYAELR 191 (204)
T ss_dssp HHHHTCSEEEECS-SHHHHHHHHH
T ss_pred hhhccCcEEEECc-CHHHHHHHHH
Confidence 234567665444 5555443333
No 16
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=78.00 E-value=11 Score=31.04 Aligned_cols=89 Identities=11% Similarity=0.144 Sum_probs=51.3
Q ss_pred hhcCCCcEEEeccCCChHHHhhhhccccCcceEEEEEeC-ChHHHHHHHHHHHHhcCCCCCCChHHHHHHHhc-cccCCC
Q psy7609 41 GFSRRRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVVVP-TNEDYLARLEMHREKEGKDDVPPDNVILEMKAN-FKLPEV 118 (226)
Q Consensus 41 AarrrRNYILDQTNVy~sAqRRKM~~F~GFqRKAVVVvP-teEe~k~R~~kr~~eeGK~~V~Pe~AvleMKAn-FsLP~~ 118 (226)
+....+.+||| +-..+++.=+..|. +.++|+|+| +.+++.+|+ ...|.+ = |++....|... .-++.
T Consensus 104 ~l~~G~illLD---LD~~~~~~i~~~l~--~~~tI~i~th~~~~l~~Rl----~~rG~~-~-~e~i~~rl~~a~~e~~~- 171 (219)
T 1s96_A 104 VLATGVDVFLD---IDWQGAQQIRQKMP--HARSIFILPPSKIELDRRL----RGRGQD-S-EEVIAKRMAQAVAEMSH- 171 (219)
T ss_dssp HHTTTCEEEEE---CCHHHHHHHHHHCT--TCEEEEEECSSHHHHHHHH----HTTSCS-C-HHHHHHHHHHHHHHHTT-
T ss_pred HHhcCCeEEEE---ECHHHHHHHHHHcc--CCEEEEEECCCHHHHHHHH----HHcCCC-C-HHHHHHHHHHHHHHHhh-
Confidence 34457999999 55566555555554 456777776 568888887 345655 2 44444445432 22332
Q ss_pred CCCCceeeeccCChHHHHHHHHHH
Q psy7609 119 GELFEEVTYIELQHPEAEKIIDEY 142 (226)
Q Consensus 119 ~e~fdEV~fvEL~~eeA~klV~kY 142 (226)
...||-|+-- -+.|+|..-|...
T Consensus 172 ~~~~d~~i~N-d~l~~a~~~l~~i 194 (219)
T 1s96_A 172 YAEYDYLIVN-DDFDTALTDLKTI 194 (219)
T ss_dssp GGGSSEEEEC-SSHHHHHHHHHHH
T ss_pred ccCCCEEEEC-cCHHHHHHHHHHH
Confidence 2458877544 3566655544443
No 17
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=76.50 E-value=3.6 Score=32.94 Aligned_cols=61 Identities=21% Similarity=0.147 Sum_probs=29.0
Q ss_pred EEeCChHHHHHHHHHHHHhcCCCCCCChHHHHHHHhccccCCCCCCCceeeeccCChHHHHHHHHHHH
Q psy7609 76 VVVPTNEDYLARLEMHREKEGKDDVPPDNVILEMKANFKLPEVGELFEEVTYIELQHPEAEKIIDEYN 143 (226)
Q Consensus 76 VVvPteEe~k~R~~kr~~eeGK~~V~Pe~AvleMKAnFsLP~~~e~fdEV~fvEL~~eeA~klV~kYn 143 (226)
|+.|+.+.+.+|+.+|. .+ - ++++...|+.....-+....+|-|+.-. +.|++.+.|.+.=
T Consensus 146 v~~~~~~~l~~Rl~~R~----~~-~-~~~i~~rl~~~~~~~~~~~~~d~vI~n~-~~e~~~~~l~~~i 206 (231)
T 3lnc_A 146 IMPPSMEELRRRLCGRR----AD-D-SEVVEARLKGAAFEISHCEAYDYVIVNE-DIEETADRISNIL 206 (231)
T ss_dssp EECSCHHHHHHC--------------------CHHHHHHHHTTGGGSSEEEECS-SHHHHHHHHHHHH
T ss_pred EECCcHHHHHHHHHHcC----CC-C-HHHHHHHHHHHHHHHhhhcCCeEEEECc-CHHHHHHHHHHHH
Confidence 34458889999998883 22 1 3444444444333223345688887766 6777766555543
No 18
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=75.80 E-value=23 Score=26.59 Aligned_cols=92 Identities=11% Similarity=0.019 Sum_probs=51.3
Q ss_pred cCCCcEEEeccCCChHHHhhhhccccCcceEEEEEeCChHHHHHHHHHHHHhcCCCCCCChHHHHHHHhccccCCCCCCC
Q psy7609 43 SRRRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVVVPTNEDYLARLEMHREKEGKDDVPPDNVILEMKANFKLPEVGELF 122 (226)
Q Consensus 43 rrrRNYILDQTNVy~sAqRRKM~~F~GFqRKAVVVvPteEe~k~R~~kr~~eeGK~~V~Pe~AvleMKAnFsLP~~~e~f 122 (226)
....+.|||-+..+.. .+..++.. +..-..|++-.+.|++.+|+.+|. +.. . +...+......+.-|...+.-
T Consensus 78 ~~~~~~vi~~~~~~~~-~~~~l~~~-~~~~~vv~l~~~~e~~~~R~~~R~---~~~-~-~~~~~~~~~~~~~~~~~~~~~ 150 (175)
T 1knq_A 78 RTNKVSLIVCSALKKH-YRDLLREG-NPNLSFIYLKGDFDVIESRLKARK---GHF-F-KTQMLVTQFETLQEPGADETD 150 (175)
T ss_dssp HHCSEEEEECCCCSHH-HHHHHHTT-CTTEEEEEEECCHHHHHHHHHTST---TCC-C-CHHHHHHHHHHCCCCCTTCTT
T ss_pred hcCCcEEEEeCchHHH-HHHHHHhc-CCCEEEEEEECCHHHHHHHHHhcc---CCC-C-chHHHHHHHHhhhCcccCCCC
Confidence 3467899998875543 34444432 122367778888999999998763 333 3 455555444444333122223
Q ss_pred ceeeeccCChHHHHHHHHH
Q psy7609 123 EEVTYIELQHPEAEKIIDE 141 (226)
Q Consensus 123 dEV~fvEL~~eeA~klV~k 141 (226)
|-++-...+.++....|.+
T Consensus 151 ~~~Id~~~~~~~~~~~i~~ 169 (175)
T 1knq_A 151 VLVVDIDQPLEGVVASTIE 169 (175)
T ss_dssp EEEEECSSCHHHHHHHHHH
T ss_pred eEEEeCCCCHHHHHHHHHH
Confidence 4444455555654444443
No 19
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=75.54 E-value=14 Score=28.26 Aligned_cols=90 Identities=14% Similarity=0.120 Sum_probs=49.6
Q ss_pred hhcCCCcEEEeccCCChHHHhhhhccccCcceEEEEEe-CChHHHHHHHHHHHHhcCCCCCCChHHHHHHHhccccCCCC
Q psy7609 41 GFSRRRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVVV-PTNEDYLARLEMHREKEGKDDVPPDNVILEMKANFKLPEVG 119 (226)
Q Consensus 41 AarrrRNYILDQTNVy~sAqRRKM~~F~GFqRKAVVVv-PteEe~k~R~~kr~~eeGK~~V~Pe~AvleMKAnFsLP~~~ 119 (226)
+....++.|+|- ..-.-.+-++..+ .-..|+++ |++|++.+|+.+|. .+ - ++.+...|.......+..
T Consensus 93 ~l~~g~~vi~d~-~~~~~~~~~~~~~----~~~~v~~~~~~~e~l~~Rl~~R~----~~-~-~~~i~~rl~~~~~~~~~~ 161 (205)
T 3tr0_A 93 QLKAGRDVLLEI-DWQGARQIRELFP----PALSIFILPPSIEALRERLIKRR----QD-D-TAIIEQRLALAREEMAHY 161 (205)
T ss_dssp HHHTTCEEEEEC-CHHHHHHHHHHCT----TCEEEEEECSCHHHHHHHHHTCT----TS-C-SSTHHHHHHHHHHHHTTG
T ss_pred HHHcCCeEEEEE-CHHHHHHHHHhCC----CcEEEEEECcCHHHHHHHHHHhC----CC-C-HHHHHHHHHHHHHHHhcc
Confidence 344567888883 1112222222211 12334444 57999999998773 23 2 555555665554333334
Q ss_pred CCCceeeeccCChHHHHHHHHHH
Q psy7609 120 ELFEEVTYIELQHPEAEKIIDEY 142 (226)
Q Consensus 120 e~fdEV~fvEL~~eeA~klV~kY 142 (226)
..+|-|+.-+ +.|++.+-|.+.
T Consensus 162 ~~~d~vi~n~-~~~~~~~~l~~~ 183 (205)
T 3tr0_A 162 KEFDYLVVND-NFDQAVQNLIHI 183 (205)
T ss_dssp GGCSEEEECS-SHHHHHHHHHHH
T ss_pred cCCCEEEECC-CHHHHHHHHHHH
Confidence 6688887766 777766555544
No 20
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=73.33 E-value=15 Score=27.46 Aligned_cols=53 Identities=9% Similarity=-0.137 Sum_probs=32.2
Q ss_pred HhhhcCCCcEEEeccCCChHHHhhhh-ccccCcceEEEEEeCChHHHHHHHHHH
Q psy7609 39 ELGFSRRRNYILDQTNVYVSAQKRKM-RSYFGFQRKAIVVVPTNEDYLARLEMH 91 (226)
Q Consensus 39 ~iAarrrRNYILDQTNVy~sAqRRKM-~~F~GFqRKAVVVvPteEe~k~R~~kr 91 (226)
..+.+...+.|+|-+.....+.++.+ ..|.+..-..|.+-++.|++.+|+.+|
T Consensus 80 ~~~~~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~r 133 (178)
T 1qhx_A 80 VAMARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCDGAVAEGRETAR 133 (178)
T ss_dssp HHHHHTTCEEEEEECCTTTHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHHHHT
T ss_pred HHHHhcCCeEEEEeccccChHHHHHHHHHhcCCcEEEEEEECCHHHHHHHHHhh
Confidence 33445677999998654444433322 234443333444667899999999876
No 21
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=68.67 E-value=8.5 Score=29.69 Aligned_cols=97 Identities=21% Similarity=0.184 Sum_probs=63.1
Q ss_pred HHHHHhhhcCCCcEEEeccCCChHHHhhhhccccCcceEEEEEeCChH--HHHHHHHHHHHhcCCCCCCChHHHHHHHhc
Q psy7609 35 NRLLELGFSRRRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVVVPTNE--DYLARLEMHREKEGKDDVPPDNVILEMKAN 112 (226)
Q Consensus 35 nrLi~iAarrrRNYILDQTNVy~sAqRRKM~~F~GFqRKAVVVvPteE--e~k~R~~kr~~eeGK~~V~Pe~AvleMKAn 112 (226)
........+.....++|.+|..+..||+++..-..+-..+-+++-+|- .+..|..+|.. .+ | |++++..+.+.
T Consensus 63 ~~~~~~~~~~g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~---~~-~-~~~vi~~~~~~ 137 (171)
T 4gp7_A 63 HYIVSKRLQLGKLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTD---RQ-V-EEYVIRKHTQQ 137 (171)
T ss_dssp HHHHHHHHHTTCCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSS---CC-C-CHHHHHHHHHH
T ss_pred HHHHHHHHhCCCeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccC---CC-C-CHHHHHHHHHH
Confidence 334444455678899999999999999988877666655555555543 36666665553 35 8 99999888777
Q ss_pred ccc--CCC-CCCCceeeeccCChHHHHH
Q psy7609 113 FKL--PEV-GELFEEVTYIELQHPEAEK 137 (226)
Q Consensus 113 FsL--P~~-~e~fdEV~fvEL~~eeA~k 137 (226)
+.= ... .+.+. |.++.=+.+++..
T Consensus 138 l~~~l~~l~~~g~t-vi~vtH~~~~~~~ 164 (171)
T 4gp7_A 138 MKKSIKGLQREGFR-YVYILNSPEEVEE 164 (171)
T ss_dssp HHHHSTTHHHHTCS-EEEEECSHHHHHH
T ss_pred hhhhhhhHHhcCCc-EEEEeCCHHHhhh
Confidence 642 222 23444 5566666666543
No 22
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=68.14 E-value=35 Score=25.48 Aligned_cols=89 Identities=10% Similarity=0.090 Sum_probs=51.9
Q ss_pred CCCcEEEeccCCChHHHhh---hhccccCcceEEEEEeCChHHHHHHHHHHHHhcCCCCCCChHHHHHHHhccccCCCCC
Q psy7609 44 RRRNYILDQTNVYVSAQKR---KMRSYFGFQRKAIVVVPTNEDYLARLEMHREKEGKDDVPPDNVILEMKANFKLPEVGE 120 (226)
Q Consensus 44 rrRNYILDQTNVy~sAqRR---KM~~F~GFqRKAVVVvPteEe~k~R~~kr~~eeGK~~V~Pe~AvleMKAnFsLP~~~e 120 (226)
...+.|+|-|..+...+.. .++. .|+.-..|++-.+.|++.+|+.+|.. .. + ..+.+..+.+.+.-+ .
T Consensus 76 ~g~~vi~d~~~~~~~~~~~~~~~l~~-~~~~~~~i~l~~~~e~~~~R~~~R~~---r~-~-~~~~~~~~~~~~~~~--~- 146 (183)
T 2vli_A 76 AAGPLIVPVSISDTARHRRLMSGLKD-RGLSVHHFTLIAPLNVVLERLRRDGQ---PQ-V-NVGTVEDRLNELRGE--Q- 146 (183)
T ss_dssp CSSCEEEEECCCCHHHHHHHHHHHHH-TTCCCEEEEEECCHHHHHHHHHTC--------C-CHHHHHHHHHHHTSG--G-
T ss_pred CCCcEEEeeeccCHHHHHHHHHHHHh-cCCceEEEEEeCCHHHHHHHHHhccc---cc-h-hHHHHHHHHHhhccc--c-
Confidence 3678899977765543322 2322 24444568888899999999987752 22 4 556666666665444 2
Q ss_pred CCceeeecc-CChHHHHHHHHHH
Q psy7609 121 LFEEVTYIE-LQHPEAEKIIDEY 142 (226)
Q Consensus 121 ~fdEV~fvE-L~~eeA~klV~kY 142 (226)
.-+ ++-.. .+.++..+.|.++
T Consensus 147 ~~~-~Id~~~~~~~~~~~~I~~~ 168 (183)
T 2vli_A 147 FQT-HIDTAGLGTQQVAEQIAAQ 168 (183)
T ss_dssp GCS-EEECTTCCHHHHHHHHHHH
T ss_pred cce-EeeCCCCCHHHHHHHHHHH
Confidence 113 44444 6666655555444
No 23
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=64.60 E-value=41 Score=25.04 Aligned_cols=57 Identities=11% Similarity=0.102 Sum_probs=33.9
Q ss_pred hcCCCcEEEeccCCChHHHhhhhccccC-cc-eEEEEEeCChHHHHHHHHHHHHhcCCC
Q psy7609 42 FSRRRNYILDQTNVYVSAQKRKMRSYFG-FQ-RKAIVVVPTNEDYLARLEMHREKEGKD 98 (226)
Q Consensus 42 arrrRNYILDQTNVy~sAqRRKM~~F~G-Fq-RKAVVVvPteEe~k~R~~kr~~eeGK~ 98 (226)
.....++|+|-+.........-...+.+ .. -..|++-.++|+..+|+.+|....+..
T Consensus 83 ~~~~~~vi~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~~r~ 141 (196)
T 1tev_A 83 NAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRS 141 (196)
T ss_dssp CTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHHTSSCC
T ss_pred ccCCCeEEEeCCCCCHHHHHHHHHHhcccCCCCEEEEEECCHHHHHHHHHcccccCCCC
Confidence 3457899999776554432211111222 11 245666778888999999887554443
No 24
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=58.93 E-value=53 Score=24.39 Aligned_cols=49 Identities=12% Similarity=0.075 Sum_probs=30.4
Q ss_pred CCCcEEEeccCCChHHHhhhhc-cccC--cceEEEEEeCChHHHHHHHHHHHH
Q psy7609 44 RRRNYILDQTNVYVSAQKRKMR-SYFG--FQRKAIVVVPTNEDYLARLEMHRE 93 (226)
Q Consensus 44 rrRNYILDQTNVy~sAqRRKM~-~F~G--FqRKAVVVvPteEe~k~R~~kr~~ 93 (226)
....+|||-+..... ++..+. .+.. ..-..|+|-+++|++.+|+.+|..
T Consensus 82 ~~~~vi~d~~~~~~~-~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~ 133 (194)
T 1qf9_A 82 QGKNFLVDGFPRNEE-NNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGE 133 (194)
T ss_dssp TTCCEEEETCCCSHH-HHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHT
T ss_pred CCCCEEEeCcCCCHH-HHHHHHHHHhccCCCCEEEEEECCHHHHHHHHHhccc
Confidence 567899997654433 333331 1121 123466777888889999998864
No 25
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=54.98 E-value=31 Score=31.22 Aligned_cols=68 Identities=12% Similarity=-0.041 Sum_probs=39.6
Q ss_pred cCCCcEEEeccCCChHHHhhhhccccCcceEEEEEe---CChHHHHHHHHHHHHh--cCCCCCCChHHHHHHHh
Q psy7609 43 SRRRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVVV---PTNEDYLARLEMHREK--EGKDDVPPDNVILEMKA 111 (226)
Q Consensus 43 rrrRNYILDQTNVy~sAqRRKM~~F~GFqRKAVVVv---PteEe~k~R~~kr~~e--eGK~~V~Pe~AvleMKA 111 (226)
.....+|+|-||.....|+.=+..+.....+.|.+- ++++.+.+|+..+... +-+. ++|++++..+..
T Consensus 121 ~~G~~vV~D~tn~~~~~R~~~~~~~~~~~~~vv~l~~~~~~~~~i~~r~~~~~~~rp~~~~-~~~e~~~~~~~~ 193 (469)
T 1bif_A 121 EGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICVDPEVIAANIVQVKLGSPDYVN-RDSDEATEDFMR 193 (469)
T ss_dssp TCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCCCHHHHHHHHHHHTTTSTTTTT-SCHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHhhhcCCcccC-CCHHHHHHHHHH
Confidence 456789999999966544443333332222333332 7788888888765422 2233 446777666643
No 26
>2kpt_A Putative secreted protein; methods development, alpha/beta, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum}
Probab=50.16 E-value=18 Score=28.66 Aligned_cols=83 Identities=12% Similarity=0.106 Sum_probs=53.4
Q ss_pred CCcEEEeccCCChHHHhhhhc----cccC--cceEEEEEeCCh-----HHHHHHHHHHHHhcCCCCCCChHHHHHHHhcc
Q psy7609 45 RRNYILDQTNVYVSAQKRKMR----SYFG--FQRKAIVVVPTN-----EDYLARLEMHREKEGKDDVPPDNVILEMKANF 113 (226)
Q Consensus 45 rRNYILDQTNVy~sAqRRKM~----~F~G--FqRKAVVVvPte-----Ee~k~R~~kr~~eeGK~~V~Pe~AvleMKAnF 113 (226)
-..||.|++||...+.+..|. -|+. =...+||+||+- |+|..|+-.+-. |...| -+
T Consensus 13 l~~~V~D~A~vLs~~~~~~L~~~l~~l~~~tg~qi~VvtV~sl~g~~ie~yA~~l~~~wg--G~ngv-----------LL 79 (148)
T 2kpt_A 13 YQDNVTDYTGQISSSDITNIQAAIDDVKASEQKVIFVVFLSSFDGVDPETWTQQALQANG--GGNVL-----------IY 79 (148)
T ss_dssp CCCSEEESSSCSCHHHHHHHHHHHHHHHHHSCCEEEEEECSCCTTTCHHHHHHHHHHHHT--CSSEE-----------EE
T ss_pred CCceeeeCCCCCCHHHHHHHHHHHHHHHHhhCCEEEEEEECCCCCCCHHHHHHHHHHHhC--CCCcE-----------EE
Confidence 356899999999999887765 3322 126788888875 789999988864 54312 11
Q ss_pred cc-CCCCCCCceeeec-cCChHHHHHHHHHH
Q psy7609 114 KL-PEVGELFEEVTYI-ELQHPEAEKIIDEY 142 (226)
Q Consensus 114 sL-P~~~e~fdEV~fv-EL~~eeA~klV~kY 142 (226)
.+ ++... =||-|- .|+-..+..+++.+
T Consensus 80 lVa~~dRk--i~vg~Gl~ltDa~~~~I~~~~ 108 (148)
T 2kpt_A 80 ALAPEERQ--YGIQGGTQWTDAELDAANNAA 108 (148)
T ss_dssp EEEGGGTE--EEEEECTTSCHHHHHHHHHHH
T ss_pred EEEeCCCE--EEeccCcccCHHHHHHHHHhc
Confidence 11 11122 133333 36777788888877
No 27
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=44.20 E-value=17 Score=28.79 Aligned_cols=91 Identities=15% Similarity=0.114 Sum_probs=43.4
Q ss_pred HHhhhcCCCcEEEeccCCChHHHhhhhccccCcceEEEEEe-CChHHHHHHHHHHHHhcCCCCCCChHHHHHHHhccc-c
Q psy7609 38 LELGFSRRRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVVV-PTNEDYLARLEMHREKEGKDDVPPDNVILEMKANFK-L 115 (226)
Q Consensus 38 i~iAarrrRNYILDQTNVy~sAqRRKM~~F~GFqRKAVVVv-PteEe~k~R~~kr~~eeGK~~V~Pe~AvleMKAnFs-L 115 (226)
++.+....++.|||- ++-...+-++..+ .-..|++. |+.|++.+|+.+|- .+ - +++....|..... +
T Consensus 92 i~~~l~~g~~vild~-~~~g~~~~~~~~~----~~~~i~i~~ps~~~l~~Rl~~R~----~~-~-~e~i~~Rl~~~~~e~ 160 (208)
T 3tau_A 92 VEEKLAAGVDIFLEI-EVQGAMQVRKAMP----EGIFIFLTPPDLSELKNRIIGRG----TE-S-MEVVEERMETAKKEI 160 (208)
T ss_dssp HHHHHHTTCCEEEEC-CHHHHHHHHHHCT----TSEEEEEECTTTTTSSCC------------C-CHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCeEEEEe-eHHHHHHHHHhCC----CeEEEEEeCCCHHHHHHHHHhcC----CC-C-HHHHHHHHHHHHHHH
Confidence 444456788999984 3433333332211 12355555 55899999999884 23 2 4433333332221 1
Q ss_pred CCCCCCCceeeeccCChHHHHHHHHH
Q psy7609 116 PEVGELFEEVTYIELQHPEAEKIIDE 141 (226)
Q Consensus 116 P~~~e~fdEV~fvEL~~eeA~klV~k 141 (226)
+ ....||-|+.-+ +.+++.+-|..
T Consensus 161 ~-~~~~~d~vivN~-~~~~~~~~l~~ 184 (208)
T 3tau_A 161 E-MMASYDYAVVND-VVANAVQKIKG 184 (208)
T ss_dssp H-HGGGSSEEEECS-SHHHHHHHHHH
T ss_pred H-hhccCCEEEECc-CHHHHHHHHHH
Confidence 1 124578777655 56665554443
No 28
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=43.48 E-value=1e+02 Score=23.12 Aligned_cols=49 Identities=16% Similarity=0.167 Sum_probs=30.4
Q ss_pred cCCCcEEEeccCCChHHHhhhhccccCcceEEEEEeCChHHHHHHHHHHH
Q psy7609 43 SRRRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVVVPTNEDYLARLEMHR 92 (226)
Q Consensus 43 rrrRNYILDQTNVy~sAqRRKM~~F~GFqRKAVVVvPteEe~k~R~~kr~ 92 (226)
....++|+|-+.... .++..+....+..-..|.|-.++|+..+|+.+|.
T Consensus 89 ~~~~~vi~dg~~~~~-~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~ 137 (199)
T 2bwj_A 89 GDTRGFLIDGYPREV-KQGEEFGRRIGDPQLVICMDCSADTMTNRLLQMS 137 (199)
T ss_dssp TSCSCEEEETCCSSH-HHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHTC
T ss_pred ccCccEEEeCCCCCH-HHHHHHHHhcCCCCEEEEEECCHHHHHHHHHcCC
Confidence 467899999765543 3333332111111246777788888999998774
No 29
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=41.92 E-value=82 Score=23.81 Aligned_cols=89 Identities=17% Similarity=0.127 Sum_probs=28.4
Q ss_pred hhcCCCcEEEeccCCChHHHhhhhccccCcceEEEEEe-CChHHHHHHHHHHHHhcCCCCCCChHHHHHHHhccccCCCC
Q psy7609 41 GFSRRRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVVV-PTNEDYLARLEMHREKEGKDDVPPDNVILEMKANFKLPEVG 119 (226)
Q Consensus 41 AarrrRNYILDQTNVy~sAqRRKM~~F~GFqRKAVVVv-PteEe~k~R~~kr~~eeGK~~V~Pe~AvleMKAnFsLP~~~ 119 (226)
+.....+.|+|-.-.+. .+-++..+ .-..|+++ |+.+.+.+|+.+|.. + - ++++...+...+..-+..
T Consensus 93 ~l~~g~~vv~d~~~~~~-~~~~~~~~----~~~~i~~~~~~~~~~~~Rl~~R~~----~-~-~~~~~~rl~~~~~~~~~~ 161 (207)
T 2j41_A 93 TMDEGHDVFLEIEVEGA-KQVRKKFP----DALFIFLAPPSLEHLRERLVGRGT----E-S-DEKIQSRINEARKEVEMM 161 (207)
T ss_dssp HHHTTCEEEEECCGGGH-HHHHHHCT----TSEEEEEECCC---------------------------------CGGGGG
T ss_pred HHHcCCeEEEEECHHHH-HHHHHhcC----CeEEEEEECCCHHHHHHHHHhcCC----C-C-HHHHHHHHHHHHHHHhcc
Confidence 33456889999642222 22222211 23455666 467889999987742 2 1 333333343332111112
Q ss_pred CCCceeeeccCChHHHHHHHHH
Q psy7609 120 ELFEEVTYIELQHPEAEKIIDE 141 (226)
Q Consensus 120 e~fdEV~fvEL~~eeA~klV~k 141 (226)
+.+|-|+.-. +.++..+-|.+
T Consensus 162 ~~~d~vI~n~-~~e~~~~~i~~ 182 (207)
T 2j41_A 162 NLYDYVVVND-EVELAKNRIQC 182 (207)
T ss_dssp GGCSEEEECS-SHHHHHHHHHH
T ss_pred ccCCEEEECC-CHHHHHHHHHH
Confidence 3456555545 55554444433
No 30
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=41.87 E-value=1.1e+02 Score=22.93 Aligned_cols=59 Identities=17% Similarity=0.173 Sum_probs=34.3
Q ss_pred HHHHHHhhhcCCCcEEEeccCCChHHHhhhhccccCcceEEEEEeCChHHHHHHHHHHHH
Q psy7609 34 LNRLLELGFSRRRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVVVPTNEDYLARLEMHRE 93 (226)
Q Consensus 34 LnrLi~iAarrrRNYILDQTNVy~sAqRRKM~~F~GFqRKAVVVvPteEe~k~R~~kr~~ 93 (226)
+...+.-+.....++|+|-+..... +...+.-.....-..|++-+++|++.+|+.+|..
T Consensus 77 ~~~~i~~~~~~~~~vi~d~~~~~~~-~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~ 135 (196)
T 2c95_A 77 LRDAMVAKVNTSKGFLIDGYPREVQ-QGEEFERRIGQPTLLLYVDAGPETMTQRLLKRGE 135 (196)
T ss_dssp HHHHHHHHTTTCSCEEEESCCCSHH-HHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHHT
T ss_pred HHHHHHhccccCCcEEEeCCCCCHH-HHHHHHHhcCCCCEEEEEECCHHHHHHHHHccCC
Confidence 3444444445678999997543332 3322221111123567777788899999988753
No 31
>4dth_A VGRG protein; alpha-beta protein, actin cross-linking toxin, G-actin, TOXI; HET: ATP; 1.78A {Vibrio cholerae} PDB: 4dtd_A* 4dtf_A* 4e1c_A* 4e1d_A* 4dtl_A*
Probab=39.25 E-value=13 Score=34.25 Aligned_cols=54 Identities=31% Similarity=0.317 Sum_probs=41.0
Q ss_pred cCccccccCCCCcccCCCCCccchhhccccccccccce----eeeeccccchhhHHHHH
Q psy7609 162 QGYGYSTTGQTGTTGQTGQSTQGASKMISAADFESGGW----WFESKSRYKISLVQLFV 216 (226)
Q Consensus 162 ~g~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 216 (226)
-|.|-+.-+||||-|-+. |+|-|+--|||.+|-+|.= -.||-.-|.-+|-+.|.
T Consensus 153 AGnG~s~e~QGqTIgMtp-SGQQAt~~vsAK~FGt~ss~E~rLLESApWYq~~Lr~~f~ 210 (396)
T 4dth_A 153 AGNGISAESQGQTITMTP-SGQQATVGVAAKGFGTSATPELRLLESAPWYQKSLKSQFA 210 (396)
T ss_dssp ETTSCSSSCCCCCCBCCG-GGEEEEEEEEGGGTTSCCSHHHHHHHTCTTCCTHHHHHHH
T ss_pred ccCccccccCCCeecccc-CcceeeeeeehhhcCCCCchhhhhhhcCcchhhhHHHHHH
Confidence 588999999999999875 5677888899999987752 34555556677776664
No 32
>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A
Probab=37.88 E-value=47 Score=30.30 Aligned_cols=105 Identities=16% Similarity=0.135 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhhhcCCCcEEEeccCCC-hHHHhhhhccccCcceEEEEEeCChHHHHHHHHHHHHhcCCCCCCChHHHHH
Q psy7609 30 TTKCLNRLLELGFSRRRNYILDQTNVY-VSAQKRKMRSYFGFQRKAIVVVPTNEDYLARLEMHREKEGKDDVPPDNVILE 108 (226)
Q Consensus 30 a~kcLnrLi~iAarrrRNYILDQTNVy-~sAqRRKM~~F~GFqRKAVVVvPteEe~k~R~~kr~~eeGK~~V~Pe~Avle 108 (226)
+..-+.++++++ +..++.|||= .|- +..|-++..+. -.-..|.-|+-|+|++|+..|-. + .+..|..
T Consensus 215 v~seVe~i~~v~-~~Gk~vILDI-DvQnGa~qlk~~~~~---~i~IFI~PPS~eeLe~RL~~RGt----~---~~~rl~~ 282 (337)
T 4dey_A 215 VQSEIERIFELA-RTLQLVVLDA-DTINHPAQLSKTSLA---PIVVYVKISSPKVLQRLIKSRGK----S---QAKHLNV 282 (337)
T ss_dssp HHHHHHHHHHHT-TTCCEEEEEE-TTCCSGGGTTTSSCC---CEEEEECCSCHHHHHHHHHTTCH----H---HHTTHHH
T ss_pred HHhHHHHHHHHH-hCCCEEEEEe-CcHHHHHHHHhcCCC---CEEEEEECcCHHHHHHHHHhCCc----h---HHHHHHH
Confidence 334455555555 4689999994 565 66666665431 12223334789999999987743 2 1222333
Q ss_pred H--HhccccCCCCCCCceeeeccCChHHH----HHHHHHHHHhcc
Q psy7609 109 M--KANFKLPEVGELFEEVTYIELQHPEA----EKIIDEYNKNAD 147 (226)
Q Consensus 109 M--KAnFsLP~~~e~fdEV~fvEL~~eeA----~klV~kYn~E~r 147 (226)
. +|..-+-...+.||-|+--+ +.|+| ..+|+.|-....
T Consensus 283 al~~ae~E~~~~~~~FDyvIVND-dLe~A~~~L~~iI~~~~~~~h 326 (337)
T 4dey_A 283 QMVAADKLAQCPPELFDVILDEN-QLEDACEHLADYLEAYWKATH 326 (337)
T ss_dssp HHHHHHHHHHSCGGGCSEEECCS-SHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhhCcccCCEEEECC-CHHHHHHHHHHHHHHHHhccC
Confidence 3 22221222225688766533 34554 445555544433
No 33
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=37.58 E-value=1.3e+02 Score=22.68 Aligned_cols=56 Identities=13% Similarity=0.125 Sum_probs=31.6
Q ss_pred hhcCCCcEEEeccCCChHHHhhhhccc--c-CcceE--EEEEeCChHHHHHHHHHHHHhcCCC
Q psy7609 41 GFSRRRNYILDQTNVYVSAQKRKMRSY--F-GFQRK--AIVVVPTNEDYLARLEMHREKEGKD 98 (226)
Q Consensus 41 AarrrRNYILDQTNVy~sAqRRKM~~F--~-GFqRK--AVVVvPteEe~k~R~~kr~~eeGK~ 98 (226)
......+.|||.. .....+++++-+ . |-+++ .|++.|+.|.+.+|...+...+|-+
T Consensus 69 ~~~~~~~~ild~~--~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~~ld 129 (189)
T 2bdt_A 69 FLLAQNDVVLDYI--AFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDEQMG 129 (189)
T ss_dssp HHHTTCEEEEESC--CCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC----C
T ss_pred HHhcCCcEEEeec--cCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccccCC
Confidence 3345678999974 344444444433 1 22223 3456799999999998876444444
No 34
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=37.12 E-value=1.4e+02 Score=22.78 Aligned_cols=83 Identities=18% Similarity=0.115 Sum_probs=45.7
Q ss_pred CcEEEeccCCChHHHhhhhccccCcceEEEEEeCChHHHHHHHHHHHHhcCCCCCCChHHHHHHHhccccCCCCCCCcee
Q psy7609 46 RNYILDQTNVYVSAQKRKMRSYFGFQRKAIVVVPTNEDYLARLEMHREKEGKDDVPPDNVILEMKANFKLPEVGELFEEV 125 (226)
Q Consensus 46 RNYILDQTNVy~sAqRRKM~~F~GFqRKAVVVvPteEe~k~R~~kr~~eeGK~~V~Pe~AvleMKAnFsLP~~~e~fdEV 125 (226)
..+|+|-...+.+ ...++ .+ ..|+|-.+.|+..+|+.+| |-. ++++...+.+.+.........|-|
T Consensus 106 ~~vive~~~l~~~-~~~~~---~~---~~i~l~~~~e~~~~Rl~~R----~~~---~~~~~~~~~~~~~~~~~~~~ad~v 171 (204)
T 2if2_A 106 TLFILEASLLVEK-GTYKN---YD---KLIVVYAPYEVCKERAIKR----GMS---EEDFERRWKKQMPIEEKVKYADYV 171 (204)
T ss_dssp CCEEEECSCSTTT-TCGGG---SS---EEEEECCCHHHHHHHHHHT----CCC---HHHHHHHHTTSCCHHHHGGGCSEE
T ss_pred CEEEEEccccccC-Cchhh---CC---EEEEEECCHHHHHHHHHHc----CCC---HHHHHHHHHhCCChhHHHhcCCEE
Confidence 6889997544443 22222 22 5677778888999999876 433 555555666654332222223434
Q ss_pred eeccCChHHHHHHHHHH
Q psy7609 126 TYIELQHPEAEKIIDEY 142 (226)
Q Consensus 126 ~fvEL~~eeA~klV~kY 142 (226)
+-.+.+.++....|.+.
T Consensus 172 Id~~~~~~~~~~~i~~~ 188 (204)
T 2if2_A 172 IDNSGSIEETYKQVKKV 188 (204)
T ss_dssp CCCSSCHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHHHH
Confidence 44444555554444443
No 35
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=33.56 E-value=51 Score=28.55 Aligned_cols=90 Identities=13% Similarity=0.074 Sum_probs=44.5
Q ss_pred HHhhhcCCCcEEEeccCCChHHHhhhhccccCcceEEEEEe-CChHHHHHHHHHHHHhcCCCCCCChHHHHHHHhcc-cc
Q psy7609 38 LELGFSRRRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVVV-PTNEDYLARLEMHREKEGKDDVPPDNVILEMKANF-KL 115 (226)
Q Consensus 38 i~iAarrrRNYILDQTNVy~sAqRRKM~~F~GFqRKAVVVv-PteEe~k~R~~kr~~eeGK~~V~Pe~AvleMKAnF-sL 115 (226)
|+-+....++.|||- .+-+-.+.++...|. ..|-|. |+.++|++ +..|- .++.+.++-+.. .+
T Consensus 187 V~~~~~~G~~vildi-d~~g~~~l~~~~~~p----i~IfI~pps~~~L~~-L~~R~---------t~~~i~~rl~~a~~~ 251 (295)
T 1kjw_A 187 VREVAEQGKHCILDV-SANAVRRLQAAHLHP----IAIFIRPRSLENVLE-INKRI---------TEEQARKAFDRATKL 251 (295)
T ss_dssp HHHHHHTTCEEEECC-CTTHHHHHHHTTCCC----EEEEECCSSHHHHHH-HCTTS---------CHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCeEEEEe-CHHHHHHHHhcccCC----eEEEEECCCHHHHHH-HHhcC---------CHHHHHHHHHHHHHH
Confidence 344456789999994 333332333322222 333333 67888887 54332 223333333222 11
Q ss_pred CC-CCCCCceeeeccCChHHHHHHHHHHH
Q psy7609 116 PE-VGELFEEVTYIELQHPEAEKIIDEYN 143 (226)
Q Consensus 116 P~-~~e~fdEV~fvEL~~eeA~klV~kYn 143 (226)
.. ..+.||-|+--+ +.|+|-+-|...=
T Consensus 252 e~~~~~~fd~vivNd-~le~a~~~l~~ii 279 (295)
T 1kjw_A 252 EQEFTECFSAIVEGD-SFEEIYHKVKRVI 279 (295)
T ss_dssp HHHHGGGCSEEECCS-SHHHHHHHHHHHH
T ss_pred HHhccccCeEEEECc-CHHHHHHHHHHHH
Confidence 11 124588875433 6777766555543
No 36
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*
Probab=33.02 E-value=28 Score=30.45 Aligned_cols=89 Identities=12% Similarity=0.104 Sum_probs=47.3
Q ss_pred HHhhhcCCCcEEEeccCCChHHHhhhhccccCcceEEEEEe-CChHHHHHHHHHHHHhcCCCCCCChHHHHHH-Hhcccc
Q psy7609 38 LELGFSRRRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVVV-PTNEDYLARLEMHREKEGKDDVPPDNVILEM-KANFKL 115 (226)
Q Consensus 38 i~iAarrrRNYILDQTNVy~sAqRRKM~~F~GFqRKAVVVv-PteEe~k~R~~kr~~eeGK~~V~Pe~AvleM-KAnFsL 115 (226)
|+-+....++.|||= .+-+..|-++..++ -..|-|. |+-|+|++|+..+. .+ - .+..+..| |+...+
T Consensus 182 V~~~~~~gk~viLdi-d~qg~~~lk~~~~~----pi~IFI~PpS~e~L~~r~~~r~----~e-~-~~~~~~r~~k~e~e~ 250 (292)
T 3tvt_A 182 VREVAEKGKHCILDV-SGNAIKRLQVAQLY----PVAVFIKPKSVDSVMEMNRRMT----EE-Q-AKKTYERAIKMEQEF 250 (292)
T ss_dssp HHHHHHHTCEEEECC-CTHHHHHHHHTTCC----CEEEEECCSCHHHHHHTCTTSC----TT-H-HHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCcEEEec-cchhhhhccccccc----ceEEEEECCCHHHHHHHHhCCC----ch-h-HHHHHHHHHHHHHhh
Confidence 444556789999994 35555555544332 2334443 57888888776553 33 1 22222222 222222
Q ss_pred CCCCCCCceeeeccCChHHHHHHHHH
Q psy7609 116 PEVGELFEEVTYIELQHPEAEKIIDE 141 (226)
Q Consensus 116 P~~~e~fdEV~fvEL~~eeA~klV~k 141 (226)
.+.||-|+- .=+.|+|-.-|..
T Consensus 251 ---~~~fD~vIv-Nddle~a~~~l~~ 272 (292)
T 3tvt_A 251 ---GEYFTGVVQ-GDTIEEIYSKVKS 272 (292)
T ss_dssp ---TTTCSEEEC-CSSHHHHHHHHHH
T ss_pred ---hhhCCEEEE-CcCHHHHHHHHHH
Confidence 367988764 3356666554443
No 37
>2kw7_A Conserved domain protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Porphyromonas gingivalis}
Probab=30.46 E-value=71 Score=24.83 Aligned_cols=47 Identities=21% Similarity=0.307 Sum_probs=31.9
Q ss_pred CcEEEeccCCChHHHhhhhcc----ccC--cceEEEEEeCC-----hHHHHHHHHHHH
Q psy7609 46 RNYILDQTNVYVSAQKRKMRS----YFG--FQRKAIVVVPT-----NEDYLARLEMHR 92 (226)
Q Consensus 46 RNYILDQTNVy~sAqRRKM~~----F~G--FqRKAVVVvPt-----eEe~k~R~~kr~ 92 (226)
..||.|.+++++.+++.+|.- ++. =-..+||++|+ .+++..++-.+-
T Consensus 18 ~~~V~D~a~~Ls~~~~~~L~~~l~~~e~~t~~qi~Vv~v~~l~g~~~~~~A~~~f~~w 75 (157)
T 2kw7_A 18 TRLVTDEAGLLSNAQEEVMNGRLRAIRSSHAVEFAVVTLPSIGDAPLEDFTLKLARQW 75 (157)
T ss_dssp TTCEEECSSCSCHHHHHHHHHHHHHHHHHTCCEEEEEEESBCTTCCHHHHHHHHHHHH
T ss_pred CceEEcccccCCHHHHHHHHHHHHHHHHhhCCeEEEEEEcCCCCCCHHHHHHHHHHHh
Confidence 459999999999999887762 321 12567888887 345555555443
No 38
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=29.96 E-value=1.1e+02 Score=23.60 Aligned_cols=46 Identities=20% Similarity=0.243 Sum_probs=28.3
Q ss_pred CCcEEEeccCCChHHHhhhhc-cc--cCcce-EEEEEeCChHHHHHHHHHH
Q psy7609 45 RRNYILDQTNVYVSAQKRKMR-SY--FGFQR-KAIVVVPTNEDYLARLEMH 91 (226)
Q Consensus 45 rRNYILDQTNVy~sAqRRKM~-~F--~GFqR-KAVVVvPteEe~k~R~~kr 91 (226)
...+|||-...... +...+. .+ .|... ..|++-.++|++.+|+.+|
T Consensus 78 ~~~~ildg~p~~~~-~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R 127 (216)
T 3dl0_A 78 ERGFLLDGFPRTVA-QAEALEEILEEMGKPIDYVINIQVDKDVLMERLTGR 127 (216)
T ss_dssp TTCEEEESCCCSHH-HHHHHHHHHHHTTCCCSEEEEEECCGGGHHHHHHTE
T ss_pred cCCEEEeCCCCCHH-HHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHCC
Confidence 67899997544333 222222 22 12222 4677778889999999988
No 39
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=29.95 E-value=11 Score=33.80 Aligned_cols=15 Identities=0% Similarity=-0.053 Sum_probs=9.6
Q ss_pred eCChHHHHHHHHHHH
Q psy7609 78 VPTNEDYLARLEMHR 92 (226)
Q Consensus 78 vPteEe~k~R~~kr~ 92 (226)
+|+.-.+..|..+.-
T Consensus 150 v~~P~~fL~~~~~~l 164 (358)
T 2pk2_A 150 IDHPHTHVVKCTQLV 164 (358)
T ss_dssp CCCTTHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHc
Confidence 567777777766543
No 40
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=27.49 E-value=2.7e+02 Score=23.18 Aligned_cols=89 Identities=12% Similarity=0.096 Sum_probs=48.6
Q ss_pred CCcEEEeccCCChHHHhhhhccccCcceEEEEEeCChHHHHHHHHHHHHhcCCCCCCChHHHHHHHhccccCCCCCCCce
Q psy7609 45 RRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVVVPTNEDYLARLEMHREKEGKDDVPPDNVILEMKANFKLPEVGELFEE 124 (226)
Q Consensus 45 rRNYILDQTNVy~sAqRRKM~~F~GFqRKAVVVvPteEe~k~R~~kr~~eeGK~~V~Pe~AvleMKAnFsLP~~~e~fdE 124 (226)
...+|+|-...+.. .+..+. -..|+|-+++|+..+|+.+|. |.. ++++...+.+.+...+.-...|-
T Consensus 181 ~~~vIveg~~l~~~----~~~~~~---d~vI~l~a~~ev~~~Rl~~R~---g~s---~e~~~~ri~~q~~~~~~~~~AD~ 247 (281)
T 2f6r_A 181 KTLCVIDAAMLLEA----GWQSMV---HEVWTVVIPETEAVRRIVERD---GLS---EAAAQSRLQSQMSGQQLVEQSNV 247 (281)
T ss_dssp CCEEEEECTTTTTT----TGGGGC---SEEEEEECCHHHHHHHHHHHH---CCC---HHHHHHHHHTSCCHHHHHHTCSE
T ss_pred CCEEEEEechhhcc----chHHhC---CEEEEEcCCHHHHHHHHHHcC---CCC---HHHHHHHHHHcCChHhhHhhCCE
Confidence 46788886544422 122222 246777788889999998874 434 66777777776332222123454
Q ss_pred eeeccCChHHH----HHHHHHHHHhc
Q psy7609 125 VTYIELQHPEA----EKIIDEYNKNA 146 (226)
Q Consensus 125 V~fvEL~~eeA----~klV~kYn~E~ 146 (226)
|+-..-+.++. .++++++..+.
T Consensus 248 vIdn~~s~eel~~~I~~~l~~l~~~~ 273 (281)
T 2f6r_A 248 VLSTLWESHVTQSQVEKAWNLLQKRL 273 (281)
T ss_dssp EEECSSCHHHHHHHHHHHHHHHHHHC
T ss_pred EEECCCCHHHHHHHHHHHHHHHHHHH
Confidence 44444344443 44444444443
No 41
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=27.08 E-value=97 Score=24.91 Aligned_cols=58 Identities=14% Similarity=0.241 Sum_probs=31.6
Q ss_pred CCCcEEEeccCCChHHHhhhhccccCcceEEEEEeCCh-HHHHHHHHHHHHhcCCCCCCChHHHHHHHh
Q psy7609 44 RRRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVVVPTN-EDYLARLEMHREKEGKDDVPPDNVILEMKA 111 (226)
Q Consensus 44 rrRNYILDQTNVy~sAqRRKM~~F~GFqRKAVVVvPte-Ee~k~R~~kr~~eeGK~~V~Pe~AvleMKA 111 (226)
.+.-+|||-.-++....-++ +. -..|+|...+ ..+.+|+.... +.|.. +++++..+..
T Consensus 133 ~~~~lilDg~~~~~~~~l~~---~~---~~~i~v~th~~~~~~r~~~r~~-~~G~~---~e~~~~~~~~ 191 (245)
T 2jeo_A 133 PADVVLFEGILVFYSQEIRD---MF---HLRLFVDTDSDVRLSRRVLRDV-RRGRD---LEQILTQYTT 191 (245)
T ss_dssp CCSEEEEECTTTTTSHHHHT---TC---SEEEEEECCHHHHHHHHHHHHT-C---C---HHHHHHHHHH
T ss_pred CCCEEEEeCccccccHHHHH---hc---CeEEEEECCHHHHHHHHHHHHH-HcCCC---HHHHHHHHHH
Confidence 46688999765554443222 22 2345555554 44555555444 56766 7888877765
No 42
>3pvh_A UPF0603 protein AT1G54780, chloroplastic; TAP domain, rossman fold, acid phosphatase, arabidopsis THAL thylakoid lumen, hydrolase; 1.60A {Arabidopsis thaliana} PDB: 3pw9_A 3ptj_A
Probab=25.09 E-value=35 Score=26.83 Aligned_cols=47 Identities=15% Similarity=0.227 Sum_probs=32.1
Q ss_pred CCcEEEeccCCChHHHhhhhcc----ccC--cceEEEEEeCCh------HHHHHHHHHH
Q psy7609 45 RRNYILDQTNVYVSAQKRKMRS----YFG--FQRKAIVVVPTN------EDYLARLEMH 91 (226)
Q Consensus 45 rRNYILDQTNVy~sAqRRKM~~----F~G--FqRKAVVVvPte------Ee~k~R~~kr 91 (226)
...|+.|+++|...+.+.+|.- ++. =...+||+||+- ++|..++-.+
T Consensus 14 ~~~~V~D~A~vLs~~~~~~l~~~l~~le~~t~~qi~Vvtv~~~~~g~~i~~~A~~l~~~ 72 (153)
T 3pvh_A 14 KETYVVDDAGVLSRVTKSDLKKLLSDLEYRKKLRLNFITVRKLTSKADAFEYADQVLEK 72 (153)
T ss_dssp TTTSEEETTCCSCHHHHHHHHHHHHHHHHHHCCEEEEEEESCCSSSCCHHHHHHHHHHH
T ss_pred CCcEEEeCCCCCCHHHHHHHHHHHHHHHHhhCCEEEEEEEcCCCCCCCHHHHHHHHHHH
Confidence 4669999999999999877762 321 126788888863 3455555444
No 43
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=24.91 E-value=2e+02 Score=23.19 Aligned_cols=103 Identities=17% Similarity=0.221 Sum_probs=56.2
Q ss_pred HHHHHHhhhcCCCcEEEeccCCChHHHhhhhcc---ccCcce-EEEEEeCChHHHHHHHHHHHHh--cCCCCCCChHHHH
Q psy7609 34 LNRLLELGFSRRRNYILDQTNVYVSAQKRKMRS---YFGFQR-KAIVVVPTNEDYLARLEMHREK--EGKDDVPPDNVIL 107 (226)
Q Consensus 34 LnrLi~iAarrrRNYILDQTNVy~sAqRRKM~~---F~GFqR-KAVVVvPteEe~k~R~~kr~~e--eGK~~V~Pe~Avl 107 (226)
+..|+.-+.....+||||--=- ..+|-..|.. -.|..- .+|.+-.++|++.+|+..|.-. -|.. .
T Consensus 64 v~~lv~~~l~~~~~~ilDGfPR-t~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl~~R~~~~~~g~~-y------- 134 (206)
T 3sr0_A 64 IIALIEEVFPKHGNVIFDGFPR-TVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRRINPETGEV-Y------- 134 (206)
T ss_dssp HHHHHHHHCCSSSCEEEESCCC-SHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEECTTTCCE-E-------
T ss_pred HHHHHHHhhccCCceEecCCch-hHHHHHHHHhhHHHhccccceeeecCCCHHHHHHHHhCCccccCCCce-e-------
Confidence 4556666667778999994110 1223322221 123333 3555667888899999988522 2221 1
Q ss_pred HHHhccccCCCCCCCceeeeccCChHHHHHHHHHHHHhcccC
Q psy7609 108 EMKANFKLPEVGELFEEVTYIELQHPEAEKIIDEYNKNADGT 149 (226)
Q Consensus 108 eMKAnFsLP~~~e~fdEV~fvEL~~eeA~klV~kYn~E~r~~ 149 (226)
-..|..|..++ ..+.-.+=.+|-.++.++.|+++....
T Consensus 135 --~~~~~pp~~g~--~l~~r~DD~~e~i~~Rl~~Y~~~t~pl 172 (206)
T 3sr0_A 135 --HVKYNPPPPGV--KVIQREDDKPEVIKKRLEVYREQTAPL 172 (206)
T ss_dssp --ETTTBCCCTTC--CCBCCGGGSHHHHHHHHHHHHHHTTHH
T ss_pred --eeeccCCCCCc--eecccCCCCHHHHHHHHHHHHHHHHHH
Confidence 11244454332 223333445667788899998876543
No 44
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=24.85 E-value=1.2e+02 Score=25.21 Aligned_cols=65 Identities=12% Similarity=0.212 Sum_probs=39.4
Q ss_pred cCCCcEEEec-cCCChHHHhhhhccccCcc---------------------eEEEEE--eCChHHHHHHHHHHHHhcCCC
Q psy7609 43 SRRRNYILDQ-TNVYVSAQKRKMRSYFGFQ---------------------RKAIVV--VPTNEDYLARLEMHREKEGKD 98 (226)
Q Consensus 43 rrrRNYILDQ-TNVy~sAqRRKM~~F~GFq---------------------RKAVVV--vPteEe~k~R~~kr~~eeGK~ 98 (226)
..++=+|||- +++...++..-++.++.+. |..++- -|+++++..++.+..+++|..
T Consensus 133 ~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 212 (354)
T 1sxj_E 133 HRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQ 212 (354)
T ss_dssp -CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCE
T ss_pred CCCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCC
Confidence 3667788998 5555555555444443322 111111 157788999999888888888
Q ss_pred CCCC-hHHHHHH
Q psy7609 99 DVPP-DNVILEM 109 (226)
Q Consensus 99 ~V~P-e~AvleM 109 (226)
+ + ++++..+
T Consensus 213 -~-~~~~~l~~i 222 (354)
T 1sxj_E 213 -L-ETKDILKRI 222 (354)
T ss_dssp -E-CCSHHHHHH
T ss_pred -C-CcHHHHHHH
Confidence 8 6 5555433
No 45
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=24.58 E-value=1.4e+02 Score=24.83 Aligned_cols=86 Identities=12% Similarity=0.038 Sum_probs=50.4
Q ss_pred cEEEeccCCChHHHhhhhccccCcceEEEEEeCChHHHHHHHHHHHHhcCCCCCCChHHHHHHHhccccCCCCCCCceee
Q psy7609 47 NYILDQTNVYVSAQKRKMRSYFGFQRKAIVVVPTNEDYLARLEMHREKEGKDDVPPDNVILEMKANFKLPEVGELFEEVT 126 (226)
Q Consensus 47 NYILDQTNVy~sAqRRKM~~F~GFqRKAVVVvPteEe~k~R~~kr~~eeGK~~V~Pe~AvleMKAnFsLP~~~e~fdEV~ 126 (226)
-.|+|-.=.|-++.-.++ --..|+|-.++|...+|+++|. |.. ++++...|.+-.+.-+....-|-|+
T Consensus 114 ~vv~d~pLL~E~~~~~~~------~D~vi~V~ap~e~r~~Rl~~Rd---g~s---~eea~~ri~~Q~~~eek~~~AD~VI 181 (210)
T 4i1u_A 114 YVIFVVPLLVESRNWKAR------CDRVLVVDCPVDTQIARVMQRN---GFT---REQVEAIIARQATREARLAAADDVI 181 (210)
T ss_dssp SEEEECTTCTTCHHHHHH------CSEEEEEECCHHHHHHHHHHHH---CCC---HHHHHHHHHHSCCHHHHHHTCSEEE
T ss_pred EEEEEEecccccCCcccc------CCeEEEEECCHHHHHHHHHhcC---CCC---HHHHHHHHHHcCChHHHHHhCCEEE
Confidence 457787655552221111 1346666677788888999875 555 7777777777654433335566677
Q ss_pred ecc-CChHH----HHHHHHHHHH
Q psy7609 127 YIE-LQHPE----AEKIIDEYNK 144 (226)
Q Consensus 127 fvE-L~~ee----A~klV~kYn~ 144 (226)
.-. -+.++ ..+++++|..
T Consensus 182 dN~~gsle~l~~qV~~l~~~~~~ 204 (210)
T 4i1u_A 182 VNDAATPDALAVQVDALHQRYLA 204 (210)
T ss_dssp ECSSCCHHHHHHHHHHHHHHHHH
T ss_pred ECCCCCHHHHHHHHHHHHHHHHH
Confidence 666 45554 4445555543
No 46
>2pfc_A Hypothetical protein RV0098/MT0107; thioesterase, virulence, unknown function; HET: PLM; 2.30A {Mycobacterium tuberculosis}
Probab=23.64 E-value=8.2 Score=32.96 Aligned_cols=52 Identities=25% Similarity=0.296 Sum_probs=32.4
Q ss_pred EEEEeCChHHHHHHHHHHHHhcCCC-------CCCChHHHHHHHhccccCCCC-----CCCceeee
Q psy7609 74 AIVVVPTNEDYLARLEMHREKEGKD-------DVPPDNVILEMKANFKLPEVG-----ELFEEVTY 127 (226)
Q Consensus 74 AVVVvPteEe~k~R~~kr~~eeGK~-------~V~Pe~AvleMKAnFsLP~~~-----e~fdEV~f 127 (226)
+.=++|+||++..|...==..-|-. ...||. ..+..+|++||.+ ..|..|+|
T Consensus 15 ~~~~~~~de~LL~rVL~PY~~~~crYL~~A~~~~~~d~--v~a~G~F~IpEScYIddTGHFNAVEf 78 (183)
T 2pfc_A 15 SSGTVPIAEELLARVLEPYSCKGCRYLIDAQYSATEDS--VLAYGNFTIGESAYIRSTGHFNAVEL 78 (183)
T ss_dssp -----CCCTTHHHHHSHHHHTTTCCCEEEEEEEECSSC--EEEEEEECCCSCSSSSCCSSCCHHHH
T ss_pred ccccccCcHHHHHhhcccccCCCceeeecceeecCCCc--eEEEEEecCCCceEEcCCCCcceeee
Confidence 4458999999999998766544320 001444 5678899999987 56766654
No 47
>2j6b_A AFV3-109; sulfolobus, crenarchaea, viral protein; 1.3A {Acidianus filamentous virus 1} SCOP: d.321.1.1 PDB: 2j6c_A
Probab=23.57 E-value=39 Score=26.53 Aligned_cols=31 Identities=19% Similarity=0.085 Sum_probs=23.8
Q ss_pred ccccCCCCCCCceeeeccCChHHHHHHHHHH
Q psy7609 112 NFKLPEVGELFEEVTYIELQHPEAEKIIDEY 142 (226)
Q Consensus 112 nFsLP~~~e~fdEV~fvEL~~eeA~klV~kY 142 (226)
.|+||-..+.=--|.+.+++.+||+++|+.+
T Consensus 7 sfsl~m~~g~~~~v~~~~Is~~Ea~~~l~~~ 37 (109)
T 2j6b_A 7 SAILPLKPGEEYTVKAKEITIQEAKELVTKE 37 (109)
T ss_dssp SCCCCBCSSSCCCEEEEEECHHHHHHHHHHS
T ss_pred ccccccCCCCceEEEEeeCCHHHHHHHhccc
Confidence 5888865443456888999999999999743
No 48
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=22.92 E-value=1.4e+02 Score=23.79 Aligned_cols=88 Identities=9% Similarity=0.124 Sum_probs=47.0
Q ss_pred CCCcEEEeccCCChHHHhhhhccccCcceEEEEEe--CChHHHHHHHHHHHHhcCCCCCCChHH----HHHHHhccccCC
Q psy7609 44 RRRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVVV--PTNEDYLARLEMHREKEGKDDVPPDNV----ILEMKANFKLPE 117 (226)
Q Consensus 44 rrRNYILDQTNVy~sAqRRKM~~F~GFqRKAVVVv--PteEe~k~R~~kr~~eeGK~~V~Pe~A----vleMKAnFsLP~ 117 (226)
.....|+| .++..-.+.| .. +.. .+.+.|++ |+.+.+.+|+..+- .+ .++. +.+.+..+++-.
T Consensus 113 ~~~~~il~-~~lsggq~qR-~~-i~~-~~~~~~ll~~~~~~~Lde~~~~~d----~~---~~~~i~~~l~~~~~~~~~~h 181 (218)
T 1z6g_A 113 QNKICLFE-MNINGVKQLK-KS-THI-KNALYIFIKPPSTDVLLSRLLTRN----TE---NQEQIQKRMEQLNIELHEAN 181 (218)
T ss_dssp TTCEEEEE-ECHHHHHHHT-TC-SSC-CSCEEEEEECSCHHHHHHHHHHTC----CC---CHHHHHHHHHHHHHHHHHHT
T ss_pred CCCcEEEE-ecHHHHHHHH-HH-hcC-CCcEEEEEeCcCHHHHHHHHHhcC----CC---CHHHHHHHHHHHHHHHHhhc
Confidence 45667888 4444333333 22 211 12244444 77788888887553 22 3333 333444444211
Q ss_pred CCCCCceeeeccCChHHHHHHHHHHHH
Q psy7609 118 VGELFEEVTYIELQHPEAEKIIDEYNK 144 (226)
Q Consensus 118 ~~e~fdEV~fvEL~~eeA~klV~kYn~ 144 (226)
-..||.|...+ +.++|..++.+.=.
T Consensus 182 -~~~~d~iiv~~-~~~ea~~~~~~ii~ 206 (218)
T 1z6g_A 182 -LLNFNLSIIND-DLTLTYQQLKNYLL 206 (218)
T ss_dssp -TSCCSEEEECS-SHHHHHHHHHHHHH
T ss_pred -ccCCCEEEECC-CHHHHHHHHHHHHH
Confidence 15688887776 77888877776544
No 49
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=22.87 E-value=2.2e+02 Score=21.34 Aligned_cols=56 Identities=14% Similarity=0.001 Sum_probs=30.7
Q ss_pred HHHhhhcCCCcEEEeccCCChHH----------HhhhhccccCcceEEEEEeCChHHHHHHHH-HHH
Q psy7609 37 LLELGFSRRRNYILDQTNVYVSA----------QKRKMRSYFGFQRKAIVVVPTNEDYLARLE-MHR 92 (226)
Q Consensus 37 Li~iAarrrRNYILDQTNVy~sA----------qRRKM~~F~GFqRKAVVVvPteEe~k~R~~-kr~ 92 (226)
.+.-+....+++|+|-.....-+ .-+.|..+....-..|++-.++|+..+|+. +|.
T Consensus 78 ~i~~~l~~g~~vi~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~~R~ 144 (213)
T 2plr_A 78 YILPMLKSGFIVISDRYIYTAYARDSVRGVDIDWVKKLYSFAIKPDITFYIRVSPDIALERIKKSKR 144 (213)
T ss_dssp THHHHHHTTCEEEEESCHHHHHHHHHTTTCCHHHHHHHTTTSCCCSEEEEEECCHHHHHHHHHHTTC
T ss_pred HHHHHHhCCCEEEEeCcHhHHHHHHHhhCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcccc
Confidence 33445557788999974221111 122232222222345666678889999998 553
No 50
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=22.78 E-value=2e+02 Score=22.06 Aligned_cols=46 Identities=17% Similarity=0.287 Sum_probs=28.3
Q ss_pred CCcEEEeccCCChHHHhhhhc-cc--cCcc-eEEEEEeCChHHHHHHHHHH
Q psy7609 45 RRNYILDQTNVYVSAQKRKMR-SY--FGFQ-RKAIVVVPTNEDYLARLEMH 91 (226)
Q Consensus 45 rRNYILDQTNVy~sAqRRKM~-~F--~GFq-RKAVVVvPteEe~k~R~~kr 91 (226)
.+++|||-...... +...+. .+ .|.. -..|++-.++|++.+|+.+|
T Consensus 78 ~~~~ildg~p~~~~-~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R 127 (216)
T 3fb4_A 78 QKGFLLDGFPRTVA-QADALDSLLTDLGKKLDYVLNIKVEQEELMKRLTGR 127 (216)
T ss_dssp TTCEEEESCCCSHH-HHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHSE
T ss_pred CCcEEEeCCCCCHH-HHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcC
Confidence 67899997543332 222222 11 1222 24677778889999999988
No 51
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=22.74 E-value=2e+02 Score=22.90 Aligned_cols=49 Identities=4% Similarity=-0.027 Sum_probs=32.1
Q ss_pred HHHHHhhhcCCCcEEE-eccCCChHHHhhhhccccCcceEEEEEeCChHH
Q psy7609 35 NRLLELGFSRRRNYIL-DQTNVYVSAQKRKMRSYFGFQRKAIVVVPTNED 83 (226)
Q Consensus 35 nrLi~iAarrrRNYIL-DQTNVy~sAqRRKM~~F~GFqRKAVVVvPteEe 83 (226)
..+.+.|.+..-+.++ ..++--...+.+-+..+...+-.+|||+|.+.+
T Consensus 24 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~ 73 (305)
T 3g1w_A 24 KGFEDAAQALNVTVEYRGAAQYDIQEQITVLEQAIAKNPAGIAISAIDPV 73 (305)
T ss_dssp HHHHHHHHHHTCEEEEEECSSSCHHHHHHHHHHHHHHCCSEEEECCSSTT
T ss_pred HHHHHHHHHcCCEEEEeCCCcCCHHHHHHHHHHHHHhCCCEEEEcCCCHH
Confidence 3344444444455555 456666777777777777777889999987654
No 52
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=22.17 E-value=19 Score=32.29 Aligned_cols=10 Identities=10% Similarity=0.278 Sum_probs=4.7
Q ss_pred HHHHHHHHHH
Q psy7609 135 AEKIIDEYNK 144 (226)
Q Consensus 135 A~klV~kYn~ 144 (226)
++.+++-|..
T Consensus 238 ~~~il~~y~~ 247 (358)
T 2pk2_A 238 THEFLQILEK 247 (358)
T ss_dssp HHHHHHHTTT
T ss_pred HHHHHHHHHh
Confidence 4445554443
No 53
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=21.88 E-value=2.6e+02 Score=21.98 Aligned_cols=50 Identities=6% Similarity=0.162 Sum_probs=32.5
Q ss_pred HHHHHHhhhcCCCcEEEeccCCChHHHhhhhccccCcceEEEEEeCChHH
Q psy7609 34 LNRLLELGFSRRRNYILDQTNVYVSAQKRKMRSYFGFQRKAIVVVPTNED 83 (226)
Q Consensus 34 LnrLi~iAarrrRNYILDQTNVy~sAqRRKM~~F~GFqRKAVVVvPteEe 83 (226)
+..+.+.|.+..-++++-.++--...+..-+..+..-+--+||++|.+.+
T Consensus 27 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~ 76 (293)
T 3l6u_A 27 INAFKAEAKANKYEALVATSQNSRISEREQILEFVHLKVDAIFITTLDDV 76 (293)
T ss_dssp HHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHHHTTCSEEEEECSCTT
T ss_pred HHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCChH
Confidence 34444455555556666556655666777777776667788999887654
No 54
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=21.23 E-value=58 Score=24.32 Aligned_cols=22 Identities=18% Similarity=0.330 Sum_probs=18.8
Q ss_pred ccCChHHHHHHHHHHHHhcccC
Q psy7609 128 IELQHPEAEKIIDEYNKNADGT 149 (226)
Q Consensus 128 vEL~~eeA~klV~kYn~E~r~~ 149 (226)
+|-..+||.+||++|.-|++..
T Consensus 43 ie~~l~EA~ell~qMelE~r~~ 64 (102)
T 1vcs_A 43 VEKQLEEARELLEQMDLEVREI 64 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHhC
Confidence 3445789999999999999987
No 55
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=20.13 E-value=33 Score=25.47 Aligned_cols=22 Identities=18% Similarity=0.318 Sum_probs=18.8
Q ss_pred cCChHHHHHHHHHHHHhcccCC
Q psy7609 129 ELQHPEAEKIIDEYNKNADGTY 150 (226)
Q Consensus 129 EL~~eeA~klV~kYn~E~r~~~ 150 (226)
|-..+||..||++|.-|++..+
T Consensus 40 e~~ldEA~ell~qMelE~~~~~ 61 (97)
T 3onj_A 40 EQQQDELFDLLDQMDVEVNNSI 61 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhCC
Confidence 3346899999999999999986
Done!