RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7609
         (226 letters)



>d1qexa_ b.32.1.1 (A:) gp9 {Bacteriophage T4 [TaxId: 10665]}
          Length = 288

 Score = 25.6 bits (56), Expect = 5.6
 Identities = 6/34 (17%), Positives = 9/34 (26%)

Query: 142 YNKNADGTYNYPQNWNAQNWQGYGYSTTGQTGTT 175
           YN   D       N    + Q    +   Q  + 
Sbjct: 39  YNAFGDQRKMAVANGTGADGQIIHATGYYQKHSI 72


>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial
           branched-chain alpha-ketoacid dehydrogenase {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 87

 Score = 24.4 bits (53), Expect = 5.7
 Identities = 10/26 (38%), Positives = 14/26 (53%)

Query: 113 FKLPEVGELFEEVTYIELQHPEAEKI 138
           FKL ++GE   EVT  E    E + +
Sbjct: 7   FKLSDIGEGIREVTVKEWYVKEGDTV 32


>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide
           acetyltransferase {Bacillus stearothermophilus [TaxId:
           1422]}
          Length = 80

 Score = 23.9 bits (52), Expect = 7.3
 Identities = 7/26 (26%), Positives = 14/26 (53%)

Query: 113 FKLPEVGELFEEVTYIELQHPEAEKI 138
           FKLP++GE   E   ++      +++
Sbjct: 4   FKLPDIGEGIHEGEIVKWFVKPGDEV 29


>d1ksoa_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens),
           s100a3 [TaxId: 9606]}
          Length = 93

 Score = 24.0 bits (52), Expect = 7.9
 Identities = 5/33 (15%), Positives = 12/33 (36%)

Query: 120 ELFEEVTYIELQHPEAEKIIDEYNKNADGTYNY 152
           +     T  E +  +  K +   + N D   ++
Sbjct: 39  KELATWTPTEFRECDYNKFMSVLDTNKDCEVDF 71


>d7ahla_ f.6.1.1 (A:) Alpha-hemolysin {Staphylococcus aureus [TaxId:
           1280]}
          Length = 293

 Score = 24.8 bits (54), Expect = 9.6
 Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 3/34 (8%)

Query: 136 EKIIDEYNKNADGTYNYPQNWNAQNWQGYGYSTT 169
             I   Y +  D   +Y  +W + NW+G      
Sbjct: 243 TNIDVIYERVRD---DYQLHWTSTNWKGTNTKDK 273


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.133    0.395 

Gapped
Lambda     K      H
   0.267   0.0609    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 888,080
Number of extensions: 41660
Number of successful extensions: 134
Number of sequences better than 10.0: 1
Number of HSP's gapped: 134
Number of HSP's successfully gapped: 9
Length of query: 226
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 144
Effective length of database: 1,281,736
Effective search space: 184569984
Effective search space used: 184569984
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.7 bits)