BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7616
(147 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar
pdb|3PXJ|B Chain B, Tandem Ig Repeats Of Dlar
pdb|3PXJ|C Chain C, Tandem Ig Repeats Of Dlar
pdb|3PXJ|D Chain D, Tandem Ig Repeats Of Dlar
Length = 210
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 58/115 (50%), Gaps = 17/115 (14%)
Query: 8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSL-----EGFS 62
PP I P N VR GG + C A G+P PSI+W K + SG +S +
Sbjct: 8 PPEIIRKPQN--QGVRVGGVASFYCAARGDPPPSIVWRKNGKKV-SGTQSRYTVLEQPGG 64
Query: 63 ITLEKVDRHQAGV----YQCTATNGVGDPVTVDMTLEVLCKILPSGEKSLEGFSI 113
I++ +++ +AG Y+C A NGVGD V+ D TL + G+K+ GF +
Sbjct: 65 ISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIY-----EGDKTPAGFPV 114
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Query: 18 GQLTVRKGGTITLECKASGNPVPSIIWSKKDSS--LPSGEKSLEGFSITLEKVDRHQAGV 75
G + G T+ + CKA GNP P+I W K + + + SL+ + +E G
Sbjct: 120 GTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIENSREEDQGK 179
Query: 76 YQCTATNGVGDPVTVDMTLEVLCKILP 102
Y+C A N +G + L V + +P
Sbjct: 180 YECVAENSMGTEHSKATNLYVKVRRVP 206
>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Drosophila Receptor Protein Tyrosine Phosphatase Dlar
Length = 212
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 58/115 (50%), Gaps = 17/115 (14%)
Query: 8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSL-----EGFS 62
PP I P N VR GG + C A G+P PSI+W K + SG +S +
Sbjct: 6 PPEIIRKPQN--QGVRVGGVASFYCAARGDPPPSIVWRKNGKKV-SGTQSRYTVLEQPGG 62
Query: 63 ITLEKVDRHQAGV----YQCTATNGVGDPVTVDMTLEVLCKILPSGEKSLEGFSI 113
I++ +++ +AG Y+C A NGVGD V+ D TL + G+K+ GF +
Sbjct: 63 ISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIY-----EGDKTPAGFPV 112
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 18 GQLTVRKGGTITLECKASGNPVPSIIWSKKDSS--LPSGEKSLEGFSITLEKVDRHQAGV 75
G + G T+ + CKA GNP P+I W K + + + SL+ + +E G
Sbjct: 118 GTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIENSREEDQGK 177
Query: 76 YQCTATNGVG 85
Y+C A N +G
Sbjct: 178 YECVAENSMG 187
>pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 117
Score = 56.6 bits (135), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 49/104 (47%), Gaps = 18/104 (17%)
Query: 7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSK--------KDSS------LP 52
PP I PS+ L V KG TL CKA G P P+I W K KD LP
Sbjct: 8 FPPRIVEHPSD--LIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLP 65
Query: 53 SGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
SG SL I + R GVY C A N +G+ V+ D +LEV
Sbjct: 66 SG--SLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEV 107
>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1
pdb|2V9R|A Chain A, First And Second Ig Domains From Human Robo1 (Form 2)
Length = 212
Score = 56.6 bits (135), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 49/104 (47%), Gaps = 18/104 (17%)
Query: 7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSK--------KDSS------LP 52
PP I PS+ L V KG TL CKA G P P+I W K KD LP
Sbjct: 8 FPPRIVEHPSD--LIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLP 65
Query: 53 SGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
SG SL I + R GVY C A N +G+ V+ D +LEV
Sbjct: 66 SG--SLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEV 107
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 11 IRTSPSNGQLTVRKGGTITLECKA-SGNPVPSIIWSKKDSSLPSGEK--SLEGFSITLEK 67
R +PS+ + V G +EC+ G+P P+I W K S L ++ ++ G + +
Sbjct: 114 FRQNPSDVMVAV--GEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGKLMITY 171
Query: 68 VDRHQAGVYQCTATNGVGD 86
+ AG Y C TN VG+
Sbjct: 172 TRKSDAGKYVCVGTNMVGE 190
>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion
Complex In Space Group P6522
pdb|3P40|A Chain A, Crystal Structure Of Neurofascin Adhesion Complex In Space
Group P3221
Length = 404
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 22 VRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLE--KVDRHQAGVYQCT 79
V +G + LEC ASG P P I W KK LPS + E F+ L V +G Y C
Sbjct: 234 VLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCL 293
Query: 80 ATNGVGDPVTVDMTLEVLCKILP 102
A+N +G ++ T+ V K P
Sbjct: 294 ASNKMG---SIRHTISVRVKAAP 313
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 41/98 (41%), Gaps = 10/98 (10%)
Query: 8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK---SLEGFSIT 64
PP+I T S V I +EC+A GNP PS W++ + S+ S T
Sbjct: 16 PPTI-TKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGT 74
Query: 65 LEKVDR------HQAGVYQCTATNGVGDPVTVDMTLEV 96
L R G YQC A N G ++ + L+V
Sbjct: 75 LVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQV 112
Score = 35.8 bits (81), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 30 LECKASGNPVPSIIW----SKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVG 85
L C+A+GNP P++ W S+ P+ + + G +I VYQC +N G
Sbjct: 332 LVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNTSNEHG 391
>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
pdb|2IEP|B Chain B, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
Length = 192
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 3 QLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK--SLEG 60
Q++M P I P N + + +G L C GNP PS+ W K DS+L + LE
Sbjct: 96 QVKM-KPKITRPPIN--VKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLES 152
Query: 61 FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
S+ + V + AG Y+C A N +G + + LEV
Sbjct: 153 GSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEV 188
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 60/164 (36%), Gaps = 47/164 (28%)
Query: 29 TLECKASGNPVPSIIWSKKDSSLPSGEKSL----EGFSITLEKVDRHQAGVYQCTATNGV 84
T C P P I W++ + + G +T+ V+ G+Y CTA NGV
Sbjct: 26 TFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNGV 85
Query: 85 GD-------------------PVTVDMTLEVLCKILP--------------SGEKS---- 107
G P+ V + +E L +LP G+ +
Sbjct: 86 GGAVESCGALQVKMKPKITRPPINVKI-IEGLKAVLPCTTMGNPKPSVSWIKGDSALREN 144
Query: 108 -----LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 146
LE S+ + V + AG Y+C A N +G + + LEV
Sbjct: 145 SRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEV 188
>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From
The Neural Cell Adhesion Molecule
Length = 107
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 6/86 (6%)
Query: 7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK------SLEG 60
VPPS+R S T ++TL C A G P P++ W+K + + + +G
Sbjct: 10 VPPSVRARQSTMNATANLSQSVTLACDADGFPEPTMTWTKDGEPIEQEDNEEKYSFNYDG 69
Query: 61 FSITLEKVDRHQAGVYQCTATNGVGD 86
+ ++KVD+ Y C A N G+
Sbjct: 70 SELIIKKVDKSDEAEYICIAENKAGE 95
>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3
pdb|2WIM|B Chain B, Crystal Structure Of Ncam2 Ig1-3
Length = 291
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSL---EGFSI 63
VPP+I + T +G +T C+ASG+P P+I W + + EK + +
Sbjct: 191 VPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTEL 250
Query: 64 TLEKVDRHQAGVYQCTATNGVGD 86
T+ + G Y C ATN G+
Sbjct: 251 TVRNIINSDGGPYVCRATNKAGE 273
Score = 30.8 bits (68), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 23/99 (23%)
Query: 62 SITLEKVDRH--QAGVYQCTATNGVGDPVTVDMTLEVLCKILPSGEKSL---------EG 110
+I+L KV+ ++ + CTA +G+P ++D P GEK + EG
Sbjct: 8 TISLSKVELSVGESKFFTCTA---IGEPESIDW-------YNPQGEKIISTQRVVVQKEG 57
Query: 111 FS--ITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 147
+T+ + AG+Y+C AT+ G + LE+
Sbjct: 58 VRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIY 96
Score = 30.0 bits (66), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 17/87 (19%)
Query: 25 GGTITLECKASGNPVPSIIWSKKDSSLPSGEKSL---------EGFS--ITLEKVDRHQA 73
G + C A G P SI W P GEK + EG +T+ + A
Sbjct: 19 GESKFFTCTAIGEP-ESIDWYN-----PQGEKIISTQRVVVQKEGVRSRLTIYNANIEDA 72
Query: 74 GVYQCTATNGVGDPVTVDMTLEVLCKI 100
G+Y+C AT+ G + LE+ K+
Sbjct: 73 GIYRCQATDAKGQTQEATVVLEIYQKL 99
>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3
Length = 189
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSL---EGFSI 63
VPP+I + T +G +T C+ASG+P P+I W + + EK + +
Sbjct: 95 VPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTEL 154
Query: 64 TLEKVDRHQAGVYQCTATNGVGD 86
T+ + G Y C ATN G+
Sbjct: 155 TVRNIINSDGGPYVCRATNKAGE 177
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 61/154 (39%), Gaps = 43/154 (27%)
Query: 24 KGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFS---ITLEKVDRHQAGVYQCTA 80
KG T+ LEC A GNPVP+I+W + D P K+ S + + + AG Y+C A
Sbjct: 218 KGTTVKLECFALGNPVPTILWRRADGK-PIARKARRHKSNGILEIPNFQQEDAGSYECVA 276
Query: 81 TNGVG--------------------DPVTVDMTLEVL--CKI----------LPSGEKSL 108
N G + + V M V CK L +G+ L
Sbjct: 277 ENSRGKNVAKGQLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLL 336
Query: 109 EGFSITLEK-------VDRHQAGVYQCTATNGVG 135
I +E+ V+ AG+YQC A N G
Sbjct: 337 TRDRIQIEQGTLNITIVNLSDAGMYQCVAENKHG 370
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 28 ITLECKASGNPVPSIIWSKKDSSLPSG---EKSLEGFSITLEKVDRHQ-AGVYQCTATNG 83
+ L C+ GNP P I W + + G S+ S+ + ++ Q AG YQC ATN
Sbjct: 25 VKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSLLINNPNKTQDAGTYQCIATNS 84
Query: 84 VGDPVTVDMTLEV 96
G V+ + L+
Sbjct: 85 FGTIVSREAKLQF 97
>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 304
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 65/138 (47%), Gaps = 13/138 (9%)
Query: 8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEK 67
PP P + Q+ V GG + C+A+G+P P + W+KK + S F +
Sbjct: 6 PPRFIKEPKD-QIGV-SGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGA 63
Query: 68 VDRHQ-------AGVYQCTATNGVGDPVTVDMTLEVLCK-ILPSGEKSLEGFSITLEKVD 119
V R Q VY+C A N VG+ +TV L VL + LPSG +++ L+ V+
Sbjct: 64 VLRIQPLRTPRDENVYECVAQNSVGE-ITVHAKLTVLREDQLPSGFPNID-MGPQLKVVE 121
Query: 120 RHQAGVYQCTATNGVGDP 137
R + C A+ G DP
Sbjct: 122 RTRTATMLCAAS-GNPDP 138
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 22 VRKGGTITLECKASGNPVPSIIWSKK----DSSLPSGE-KSLEGFSITLEKVDRHQAGVY 76
V + T T+ C ASGNP P I W K D S +G K L ++ +E + G Y
Sbjct: 120 VERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKY 179
Query: 77 QCTATNGVG 85
+C ATN G
Sbjct: 180 ECVATNSAG 188
Score = 34.3 bits (77), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 45/102 (44%), Gaps = 6/102 (5%)
Query: 3 QLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFS 62
++Q V P P + ++ GG + + C A G+P+P + W + L + G +
Sbjct: 200 RVQNVAPRFSILPMSHEIM--PGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMPVGRN 257
Query: 63 ITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCKILPSG 104
+ LE D + Y C A + +G ++ ++ K LP
Sbjct: 258 V-LELTDVKDSANYTCVAMSSLG---VIEAVAQITVKSLPKA 295
>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
pdb|1BIH|B Chain B, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
Length = 395
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%)
Query: 20 LTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCT 79
+ V++G +T+ CK +G P P+++WS L G ++ + ++ V G Y C
Sbjct: 319 IVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTDSGLVIKGVKNGDKGYYGCR 378
Query: 80 ATNGVGD 86
ATN GD
Sbjct: 379 ATNEHGD 385
Score = 25.8 bits (55), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 19/91 (20%)
Query: 20 LTVRKGGTITLECKASGNPV--PSIIWSKKD-----------SSLPSGEKSLEGFSITLE 66
+ + G + C NP+ P+ + KD + SG++ L F TL
Sbjct: 222 MMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLL--FKTTLP 279
Query: 67 KVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97
+ GVY C NGVG P + L V+
Sbjct: 280 E----DEGVYTCEVDNGVGKPQKHSLKLTVV 306
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 61/154 (39%), Gaps = 43/154 (27%)
Query: 24 KGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFS---ITLEKVDRHQAGVYQCTA 80
KG T+ LEC A GNPVP+I+W + D P K+ S + + + AG Y+C A
Sbjct: 219 KGTTVKLECFALGNPVPTILWRRADGK-PIARKARRHKSNGILEIPNFQQEDAGSYECVA 277
Query: 81 TNGVG--------------------DPVTVDMTLEVL--CKI----------LPSGEKSL 108
N G + + V M V CK L +G+ L
Sbjct: 278 ENSRGKNVAKGQLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLL 337
Query: 109 EGFSITLEK-------VDRHQAGVYQCTATNGVG 135
I +E+ V+ AG+YQC A N G
Sbjct: 338 TRDRIQIEQGTLNITIVNLSDAGMYQCVAENKHG 371
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 28 ITLECKASGNPVPSIIWSKKDSSLPSG---EKSLEGFSITLEKVDRHQ-AGVYQCTATNG 83
+ L C+ GNP P I W + + G S+ S+ + ++ Q AG YQC ATN
Sbjct: 26 VKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSLLINNPNKTQDAGTYQCIATNS 85
Query: 84 VGDPVTVDMTLEV 96
G V+ + L+
Sbjct: 86 FGTIVSREAKLQF 98
>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 214
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 65/138 (47%), Gaps = 13/138 (9%)
Query: 8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEK 67
PP P + Q+ V GG + C+A+G+P P + W+KK + S F +
Sbjct: 6 PPRFIKEPKD-QIGV-SGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGA 63
Query: 68 VDRHQ-------AGVYQCTATNGVGDPVTVDMTLEVLCK-ILPSGEKSLEGFSITLEKVD 119
V R Q VY+C A N VG+ +TV L VL + LPSG +++ L+ V+
Sbjct: 64 VLRIQPLRTPRDENVYECVAQNSVGE-ITVHAKLTVLREDQLPSGFPNID-MGPQLKVVE 121
Query: 120 RHQAGVYQCTATNGVGDP 137
R + C A+ G DP
Sbjct: 122 RTRTATMLCAAS-GNPDP 138
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 22 VRKGGTITLECKASGNPVPSIIWSKK----DSSLPSGE-KSLEGFSITLEKVDRHQAGVY 76
V + T T+ C ASGNP P I W K D S +G K L ++ +E + G Y
Sbjct: 120 VERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKY 179
Query: 77 QCTATNGVG 85
+C ATN G
Sbjct: 180 ECVATNSAG 188
>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 202
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 65/138 (47%), Gaps = 13/138 (9%)
Query: 8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEK 67
PP P + Q+ V GG + C+A+G+P P + W+KK + S F +
Sbjct: 6 PPRFIKEPKD-QIGV-SGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGA 63
Query: 68 VDRHQ-------AGVYQCTATNGVGDPVTVDMTLEVLCK-ILPSGEKSLEGFSITLEKVD 119
V R Q VY+C A N VG+ +TV L VL + LPSG +++ L+ V+
Sbjct: 64 VLRIQPLRTPRDENVYECVAQNSVGE-ITVHAKLTVLREDQLPSGFPNID-MGPQLKVVE 121
Query: 120 RHQAGVYQCTATNGVGDP 137
R + C A+ G DP
Sbjct: 122 RTRTATMLCAAS-GNPDP 138
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 22 VRKGGTITLECKASGNPVPSIIWSKK----DSSLPSGE-KSLEGFSITLEKVDRHQAGVY 76
V + T T+ C ASGNP P I W K D S +G K L ++ +E + G Y
Sbjct: 120 VERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKY 179
Query: 77 QCTATNGVG 85
+C ATN G
Sbjct: 180 ECVATNSAG 188
>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5R|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 391
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 57/127 (44%), Gaps = 19/127 (14%)
Query: 30 LECKASGNPVPSIIWSKKDSSL-----------PSGEKSLEGFSITLEKVDRHQAGVYQC 78
+ECKASGNP+P IIW + D + G+ F + + H A VY C
Sbjct: 24 IECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVH-AQVYAC 82
Query: 79 TATNGVGDPVTVDMTLEVLCKILPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPV 138
A N G ++ D+ + + ++ S E + E V R + V +C + V D V
Sbjct: 83 LARNQFGSIISRDVHVRAV--VIQSYESEADN-----EYVIRGNSVVMKCEIPSYVADFV 135
Query: 139 TVDMTLE 145
VD+ L+
Sbjct: 136 FVDLWLD 142
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Query: 21 TVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTA 80
TV G C+ +GNP+ ++ W K ++ E L +E V + G+YQC
Sbjct: 321 TVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESVLR-----IESVKKEDKGMYQCFV 375
Query: 81 TN 82
N
Sbjct: 376 RN 377
>pdb|3S97|C Chain C, Ptprz Cntn1 Complex
pdb|3S97|D Chain D, Ptprz Cntn1 Complex
Length = 201
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 25 GGTITLECKASGNPVPSIIWSKKDSSLPS-GEKSLEGFSITLEKVDRHQAGVYQCTATNG 83
G +TLEC A GNPVP I W K +PS E S G + + + G+Y+C A N
Sbjct: 128 GQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAVLKIFNIQLEDEGIYECEAENI 187
Query: 84 VG 85
G
Sbjct: 188 RG 189
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Query: 8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSL---EGF--S 62
PP R P + KG + LEC+ G P + W K L SG+K E F S
Sbjct: 384 PPVFRKKPH--PVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTS 441
Query: 63 ITLEKVDRHQAGVYQCTATNGVG 85
I + VD G YQC A+N VG
Sbjct: 442 IHILNVDSADIGEYQCKASNDVG 464
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 44/103 (42%), Gaps = 11/103 (10%)
Query: 25 GGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGF-----SITLEKVDRHQAGVYQCT 79
G ITL+CK G P I W K+ + L S F S+ + KVD G Y C
Sbjct: 20 GEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYTCK 79
Query: 80 ATNGVGDPVTVDMTLEVLCKILPSGEKSLE------GFSITLE 116
A N VG + + + K+ PS + L+ GF + E
Sbjct: 80 AENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFE 122
Score = 33.9 bits (76), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSL-PSGEKSL----EGF 61
VPP P + L + + GT +C +G I W+K + + P G +
Sbjct: 196 VPPFFDLKPVSVDLALGESGT--FKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTA 253
Query: 62 SITLEKVDRHQAGVYQCTATNGVG 85
++T+ KV + AG Y C A+N G
Sbjct: 254 TLTVLKVTKGDAGQYTCYASNVAG 277
Score = 30.4 bits (67), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 69/183 (37%), Gaps = 55/183 (30%)
Query: 5 QMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSI- 63
+ +PPS + T+ G + EC+ +G+ + W K D L + +L+ I
Sbjct: 98 RKLPPSFARKLKDVHETL--GFPVAFECRINGSEPLQVSWYK-DGELLKDDANLQTSFIH 154
Query: 64 ---TLE--KVDRHQAGVYQCTATNGVG---------------------DPVTVDMTL--- 94
TL+ + D+ G Y C+A+N +G PV+VD+ L
Sbjct: 155 NVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGES 214
Query: 95 -EVLC-----------------KILPSGEKSL----EGFSITLEKVDRHQAGVYQCTATN 132
C +I P G + ++T+ KV + AG Y C A+N
Sbjct: 215 GTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASN 274
Query: 133 GVG 135
G
Sbjct: 275 VAG 277
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 62/169 (36%), Gaps = 62/169 (36%)
Query: 22 VRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKS----------LEGFSITLEKVDRH 71
V++ ECK G+P ++W K ++ + K LE +++++E
Sbjct: 303 VKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVE----- 357
Query: 72 QAGVYQCTATN-----------GVGDPVTV-------------DMTLEVLCKI------- 100
+G Y C A N V +P D+ LE C++
Sbjct: 358 DSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLE--CELQGTPPFQ 415
Query: 101 ---------LPSGEKSL---EGF--SITLEKVDRHQAGVYQCTATNGVG 135
L SG+K E F SI + VD G YQC A+N VG
Sbjct: 416 VSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVG 464
>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin
Length = 284
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Query: 8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSL---EGF--S 62
PP R P + KG + LEC+ G P + W K L SG+K E F S
Sbjct: 192 PPVFRKKPH--PVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTS 249
Query: 63 ITLEKVDRHQAGVYQCTATNGVG 85
I + VD G YQC A+N VG
Sbjct: 250 IHILNVDSADIGEYQCKASNDVG 272
Score = 35.0 bits (79), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 7/85 (8%)
Query: 6 MVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSL-PSGEKSL----EG 60
M PP P + L + + GT +C +G I W+K + + P G +
Sbjct: 3 MAPPFFDLKPVSVDLALGESGT--FKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENT 60
Query: 61 FSITLEKVDRHQAGVYQCTATNGVG 85
++T+ KV + AG Y C A+N G
Sbjct: 61 ATLTVLKVTKGDAGQYTCYASNVAG 85
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 62/169 (36%), Gaps = 62/169 (36%)
Query: 22 VRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKS----------LEGFSITLEKVDRH 71
V++ ECK G+P ++W K ++ + K LE +++++E
Sbjct: 111 VKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVE----- 165
Query: 72 QAGVYQCTATN-----------GVGDPVTV-------------DMTLEVLCKI------- 100
+G Y C A N V +P D+ LE C++
Sbjct: 166 DSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLE--CELQGTPPFQ 223
Query: 101 ---------LPSGEKSL---EGF--SITLEKVDRHQAGVYQCTATNGVG 135
L SG+K E F SI + VD G YQC A+N VG
Sbjct: 224 VSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVG 272
>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken
Length = 382
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 25 GGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATN 82
G +TLEC A GNPVP I W K D S S S E + ++ VD G Y+C A N
Sbjct: 222 GQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEPL-LHIQNVDFEDEGTYECEAEN 278
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Query: 28 ITLECKASGNPVPSIIWSKKDSSLPSGEKS----LEGFSITLEKVDRHQAGVYQCTATNG 83
+TL C+A NP + W + L G S + G + V AG YQC ATN
Sbjct: 25 VTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVATNA 84
Query: 84 VGDPVTVDMTLEV 96
G V+ + +L
Sbjct: 85 RGTVVSREASLRF 97
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 25 GGTITLECKASGNPVPSIIWSKKDSSLPSGEK-SLEGFSITLEKVDRHQAGVYQCTATNG 83
G + C ASG P P++ W + L S + + G + K+ +G+YQC A N
Sbjct: 309 GSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAENK 368
Query: 84 VG 85
G
Sbjct: 369 HG 370
>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated
Variant
Length = 284
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Query: 8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSL---EGF--S 62
PP R P + KG + LEC+ G P + W K L SG+K E F S
Sbjct: 192 PPVFRKKPH--PVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTS 249
Query: 63 ITLEKVDRHQAGVYQCTATNGVG 85
I + VD G YQC A+N VG
Sbjct: 250 IHILNVDSADIGEYQCKASNDVG 272
Score = 35.0 bits (79), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 7/85 (8%)
Query: 6 MVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSL-PSGEKSL----EG 60
M PP P + L + + GT +C +G I W+K + + P G +
Sbjct: 3 MAPPFFDLKPVSVDLALGESGT--FKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENT 60
Query: 61 FSITLEKVDRHQAGVYQCTATNGVG 85
++T+ KV + AG Y C A+N G
Sbjct: 61 ATLTVLKVTKGDAGQYTCYASNVAG 85
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 62/169 (36%), Gaps = 62/169 (36%)
Query: 22 VRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKS----------LEGFSITLEKVDRH 71
V++ ECK G+P ++W K ++ + K LE +++++E
Sbjct: 111 VKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVE----- 165
Query: 72 QAGVYQCTATN-----------GVGDPVTV-------------DMTLEVLCKI------- 100
+G Y C A N V +P D+ LE C++
Sbjct: 166 DSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLE--CELQGTPPFQ 223
Query: 101 ---------LPSGEKSL---EGF--SITLEKVDRHQAGVYQCTATNGVG 135
L SG+K E F SI + VD G YQC A+N VG
Sbjct: 224 VSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVG 272
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 6 MVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKK-DSSLPSGEKSLEGFS-I 63
+VPP PSN L + I EC SG PVP++ W K D +PS + G S +
Sbjct: 310 LVPPWFLNHPSN--LYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSNL 367
Query: 64 TLEKVDRHQAGVYQCTATNGVGD 86
+ V + G YQC A N G+
Sbjct: 368 RILGVVKSDEGFYQCVAENEAGN 390
Score = 39.3 bits (90), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 6 MVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSL---PSGEK--SLEG 60
MV +R +T G T+ L+C+ G+P+P+I W K L P + L
Sbjct: 117 MVAGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPS 176
Query: 61 FSITLEKVDRHQAGVYQCTATN 82
++ + ++ +GVY+C+A N
Sbjct: 177 GALQISRLQPGDSGVYRCSARN 198
Score = 30.8 bits (68), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Query: 15 PSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDS--SLPSGEKSLEGFS-ITLEKVDRH 71
PSN + +G LEC SG P PS W + + L S + SL G S + + V
Sbjct: 228 PSN--VIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDD 285
Query: 72 QAGVYQCTAT 81
+G Y C T
Sbjct: 286 DSGTYTCVVT 295
Score = 30.0 bits (66), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 10/70 (14%)
Query: 24 KGGTITLECKA-SGNPVPSIIWSKKDSSLPSG----EKSLEGFSITLEKV--DRHQA--- 73
+GG + L C A S VP I W K L G ++ L S+ ++ + RH
Sbjct: 35 RGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNGSLLIQNILHSRHHKPDE 94
Query: 74 GVYQCTATNG 83
G+YQC A+ G
Sbjct: 95 GLYQCEASLG 104
>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1
Length = 381
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 2 EQLQMVPPSIRTS-PSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEG 60
E ++ PSI+ P+ V G +TLEC A GNPVP I W K D SL + E
Sbjct: 199 EDTRLFAPSIKARFPAETYALV--GQQVTLECFAFGNPVPRIKWRKVDGSLSPQWTTAEP 256
Query: 61 FSITLEKVDRHQAGVYQCTATNGVG 85
++ + V G Y+C A N G
Sbjct: 257 -TLQIPSVSFEDEGTYECEAENSKG 280
Score = 35.0 bits (79), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 25 GGTITLECKASGNPVPSIIWSKKDSSLPSGEK--SLEGFSITLEKVDRHQAGVYQCTATN 82
G + C A+G P P++ W + L S + L G + K+ +G+YQC A N
Sbjct: 308 GSNLRWGCAAAGKPRPTVRWLRNGEPLASQNRVEVLAG-DLRFSKLSLEDSGMYQCVAEN 366
Query: 83 GVG 85
G
Sbjct: 367 KHG 369
Score = 34.3 bits (77), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 28 ITLECKASGNPVPSIIWSKKDSSL---PSGEKSLEGFSITLEKVDRHQ-AGVYQCTATNG 83
+ L C+A +P + W + + P L G ++ + + Q AGVYQC A+N
Sbjct: 24 VLLACRARASPPATYRWKMNGTEMKLEPGSRHQLVGGNLVIMNPTKAQDAGVYQCLASNP 83
Query: 84 VGDPVTVDMTLEV 96
VG V+ + L
Sbjct: 84 VGTVVSREAILRF 96
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 99 KILPSGEKSLEGFSITLEKVDRHQ-AGVYQCTATNGVGDPVTVDMTLEV 146
K+ P L G ++ + + Q AGVYQC A+N VG V+ + L
Sbjct: 48 KLEPGSRHQLVGGNLVIMNPTKAQDAGVYQCLASNPVGTVVSREAILRF 96
>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar
pdb|2YD8|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar In Complex
With Sucrose Octasulphate
Length = 214
Score = 46.6 bits (109), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 49/107 (45%), Gaps = 11/107 (10%)
Query: 1 MEQLQMVP--PSIRTSPSNGQL-TVRKGGTITLECKASGNPVPSIIWSKK----DSSLPS 53
+E+ Q+ P PSI P QL V K T T+ C A GNP P I W K D + +
Sbjct: 99 LEEEQLPPGFPSIDMGP---QLKVVEKARTATMLCAAGGNPDPEISWFKDFLPVDPATSN 155
Query: 54 GE-KSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCK 99
G K L ++ +E + G Y+C ATN G + L V +
Sbjct: 156 GRIKQLRSGALQIESSEESDQGKYECVATNSAGTRYSAPANLYVRVR 202
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 13/122 (10%)
Query: 25 GGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFS--------ITLEKVDRHQAGVY 76
GG + C+A+G P P I W KK + S + F I +V R +A +Y
Sbjct: 21 GGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLRIQPLRVQRDEA-IY 79
Query: 77 QCTATNGVGDPVTVDMTLEVL-CKILPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVG 135
+CTATN +G+ + L VL + LP G S++ L+ V++ + C A G
Sbjct: 80 ECTATNSLGE-INTSAKLSVLEEEQLPPGFPSID-MGPQLKVVEKARTATMLC-AAGGNP 136
Query: 136 DP 137
DP
Sbjct: 137 DP 138
>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam
Length = 291
Score = 46.2 bits (108), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 8/100 (8%)
Query: 7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEG--FS-- 62
VPP+++ S T G ++TL C A G P P++ W+K + + E+ E FS
Sbjct: 193 VPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDD 252
Query: 63 ---ITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCK 99
+T+ VD++ Y C A N G+ + L+V K
Sbjct: 253 SSELTIRNVDKNDEAEYVCIAENKAGEQ-DASIHLKVFAK 291
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 15/74 (20%)
Query: 41 SIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQC--TATNGVGDPVTVDMTL--EV 96
S++W+ DSS ++T+ + AG+Y+C TA +G TV++ + ++
Sbjct: 53 SVVWNDDDSS-----------TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKL 101
Query: 97 LCKILPSGEKSLEG 110
+ K P+ ++ EG
Sbjct: 102 MFKNAPTPQEFKEG 115
>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar
Length = 201
Score = 45.8 bits (107), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 46/101 (45%), Gaps = 9/101 (8%)
Query: 2 EQLQMVPPSIRTSPSNGQL-TVRKGGTITLECKASGNPVPSIIWSKK----DSSLPSGE- 55
+QL P+I P QL V KG T T+ C A GNP P I W K D + +G
Sbjct: 103 DQLPSGFPTIDMGP---QLKVVEKGRTATMLCAAGGNPDPEISWFKDFLPVDPAASNGRI 159
Query: 56 KSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
K L ++ +E + G Y+C ATN G + L V
Sbjct: 160 KQLRSGALQIESSEESDQGKYECVATNSAGTRYSAPANLYV 200
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 58/122 (47%), Gaps = 13/122 (10%)
Query: 25 GGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFS--------ITLEKVDRHQAGVY 76
GG + C+A+G P P I W KK + S + F I +V R +A +Y
Sbjct: 22 GGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLRIQPLRVQRDEA-IY 80
Query: 77 QCTATNGVGDPVTVDMTLEVLCK-ILPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVG 135
+CTATN +G+ + L VL + LPSG +++ L+ V++ + C A G
Sbjct: 81 ECTATNSLGE-INTSAKLSVLEEDQLPSGFPTID-MGPQLKVVEKGRTATMLC-AAGGNP 137
Query: 136 DP 137
DP
Sbjct: 138 DP 139
>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|B Chain B, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|C Chain C, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|D Chain D, Drosophila Robo Ig1-2 (Monoclinic Form)
Length = 208
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 42/101 (41%), Gaps = 11/101 (10%)
Query: 5 QMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEG---- 60
Q P I P++ L V+K TL CK G P P+I W K + + EK
Sbjct: 6 QYQSPRIIEHPTD--LVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFK 63
Query: 61 -----FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
F T++ G Y C A N VG V+ +L++
Sbjct: 64 DGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQI 104
>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|B Chain B, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|C Chain C, Drosophila Robo Ig1-2 (Tetragonal Form)
Length = 217
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 42/101 (41%), Gaps = 11/101 (10%)
Query: 5 QMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEG---- 60
Q P I P++ L V+K TL CK G P P+I W K + + EK
Sbjct: 6 QYQSPRIIEHPTD--LVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFK 63
Query: 61 -----FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
F T++ G Y C A N VG V+ +L++
Sbjct: 64 DGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQI 104
>pdb|2EO9|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From
Human Roundabout Homo1
Length = 118
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
Query: 8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGE----KSLEGFSI 63
PP IR P N TV GT L C A+G+PVP+I+W +KD L S + K LE +
Sbjct: 8 PPVIRQGPVN--QTVAVDGTFVLSCVATGSPVPTILW-RKDGVLVSTQDSRIKQLENGVL 64
Query: 64 TLEKVDRHQAGVYQCTATNGVGD 86
+ G Y C A+ G+
Sbjct: 65 QIRYAKLGDTGRYTCIASTPSGE 87
>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|B Chain B, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
Length = 212
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 11/121 (9%)
Query: 25 GGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQ-------AGVYQ 77
GG + C+A+G+P P I+W+KK + + + F V R Q +Y+
Sbjct: 21 GGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYE 80
Query: 78 CTATNGVGDPVTVDMTLEVLCK-ILPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGD 136
C A+N VG+ ++V L VL + +P G +++ L+ V+R + C A+ G D
Sbjct: 81 CVASNNVGE-ISVSTRLTVLREDQIPRGFPTID-MGPQLKVVERTRTATMLCAAS-GNPD 137
Query: 137 P 137
P
Sbjct: 138 P 138
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Query: 22 VRKGGTITLECKASGNPVPSIIWSKK----DSSLPSGE-KSLEGFSI---TLEKVDRHQA 73
V + T T+ C ASGNP P I W K D+S +G K L SI +E+ +
Sbjct: 120 VERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQ 179
Query: 74 GVYQCTATNGVGDPVTVDMTLEV 96
G Y+C ATN G + L V
Sbjct: 180 GKYECVATNSAGTRYSAPANLYV 202
>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From
Human Roundabout Homolog 2
Length = 100
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSL---EGFSIT 64
PP I P+N L V GT L+CKA+G+P+P I W K+ + P + E ++
Sbjct: 8 PPIILQGPANQTLAVD--GTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQ 65
Query: 65 LEKVDRHQAGVYQCTATNGVGD 86
++ + G Y C AT+ G+
Sbjct: 66 IKNLRISDTGTYTCVATSSSGE 87
>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7
Length = 108
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 5/85 (5%)
Query: 4 LQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSL--PSGEKSLEG- 60
L+ V P+I + N ++ G +I + C ASGNP P I+W K + +L SG +G
Sbjct: 6 LERVAPTITGNLENQTTSI--GESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGN 63
Query: 61 FSITLEKVDRHQAGVYQCTATNGVG 85
++T+ +V + G+Y C A + +G
Sbjct: 64 RNLTIRRVRKEDEGLYTCQACSVLG 88
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 10/99 (10%)
Query: 6 MVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSL------- 58
VPP P++ +G +ECKA G P P + W K P K L
Sbjct: 712 YVPPRWILEPTDKAFA--QGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIR 769
Query: 59 -EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
E ++ ++ + + G Y C A NG+G ++ + + V
Sbjct: 770 VEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISV 808
Score = 43.1 bits (100), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 50/122 (40%), Gaps = 19/122 (15%)
Query: 30 LECKASGNPVPSIIWSKKDSSL-----------PSGEKSLEGFSITLEKVDRHQAGVYQC 78
+ECKASGNP+P IIW + D + G+ F + + H A VY C
Sbjct: 59 IECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVH-AQVYAC 117
Query: 79 TATNGVGDPVTVDMTLEVLCKILPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPV 138
A N G ++ D+ + + + + E V R + V +C + V D V
Sbjct: 118 LARNQFGSIISRDVHVRAVVAQYYEAD-------VNKEHVIRGNSAVIKCLIPSFVADFV 170
Query: 139 TV 140
V
Sbjct: 171 EV 172
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 25 GGTITLECKASGNPVPSIIWSKKDSSLP--SGEKSLEGFSITLEKVDRH-QAGVYQCTAT 81
G T+ + C +G P+ SI+W + + +LP +K ++ +E V+R+ Y C A
Sbjct: 541 GETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVERNSDQATYTCVAK 600
Query: 82 NGVGDPVTVDMTLEVLCKILP 102
N G + +LEV +LP
Sbjct: 601 NQEG--YSARGSLEVQVMVLP 619
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 12/88 (13%)
Query: 8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLE- 66
PP IR + + T+ G ++ L+C A GNP P I W + + ++ G +T+
Sbjct: 429 PPVIRQAFQ--EETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNG 486
Query: 67 ---------KVDRHQAGVYQCTATNGVG 85
V + G+Y+C A + VG
Sbjct: 487 DVVSYLNITSVHANDGGLYKCIAKSKVG 514
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Query: 21 TVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTA 80
TV G C+ +GNP+ ++ W K ++ E L +E V + G+YQC
Sbjct: 354 TVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESVLR-----IESVKKEDKGMYQCFV 408
Query: 81 TN 82
N
Sbjct: 409 RN 410
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 9/90 (10%)
Query: 3 QLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVP-SIIWS------KKDSSLPSGE 55
Q+ ++P I + G V G +TL C G +P +I W+ +D + +
Sbjct: 614 QVMVLPRIIPFAFEEGPAQV--GQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSR 671
Query: 56 KSLEGFSITLEKVDRHQAGVYQCTATNGVG 85
G +T+E V+ AG + C A N G
Sbjct: 672 VGRRGSVLTIEAVEASHAGNFTCHARNLAG 701
Score = 26.2 bits (56), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 26/67 (38%), Gaps = 9/67 (13%)
Query: 27 TITLECKASGNPVPSIIW--------SKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQC 78
T+ L C A G PVP W K+ L K + G I + V +G Y C
Sbjct: 265 TMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAV-VEDSGKYLC 323
Query: 79 TATNGVG 85
N VG
Sbjct: 324 VVNNSVG 330
>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity
Length = 388
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 50/122 (40%), Gaps = 19/122 (15%)
Query: 30 LECKASGNPVPSIIWSKKDSSL-----------PSGEKSLEGFSITLEKVDRHQAGVYQC 78
+ECKASGNP+P IIW + D + G+ F + + H A VY C
Sbjct: 24 IECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVH-AQVYAC 82
Query: 79 TATNGVGDPVTVDMTLEVLCKILPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPV 138
A N G ++ D+ + + + + E V R + V +C + V D V
Sbjct: 83 LARNQFGSIISRDVHVRAVVAQYYEAD-------VNKEHVIRGNSAVIKCLIPSFVADFV 135
Query: 139 TV 140
V
Sbjct: 136 EV 137
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Query: 21 TVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTA 80
TV G C+ +GNP+ ++ W K ++ E L +E V + G+YQC
Sbjct: 318 TVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESVLR-----IESVKKEDKGMYQCFV 372
Query: 81 TN 82
N
Sbjct: 373 RN 374
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 27/67 (40%), Gaps = 9/67 (13%)
Query: 27 TITLECKASGNPVPSIIW--------SKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQC 78
TI+L C A G P PS W K+ L K + G I + V +G Y C
Sbjct: 229 TISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAV-VEDSGKYLC 287
Query: 79 TATNGVG 85
N VG
Sbjct: 288 VVNNSVG 294
>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4
Length = 192
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 9 PSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSL---EGFSITL 65
P+I + T +G +T C+ASG+P P+I W + + EK + +T+
Sbjct: 3 PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTV 62
Query: 66 EKVDRHQAGVYQCTATNGVGD 86
+ G Y C ATN G+
Sbjct: 63 RNIINSDGGPYVCRATNKAGE 83
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 12/77 (15%)
Query: 21 TVRKGGTITLECKASGNPVPSIIWSK--KDSSLPSGEKSLEGF----------SITLEKV 68
T + G +TL C A G P+P I W + + G+KSL+G S+ ++ V
Sbjct: 105 TTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDV 164
Query: 69 DRHQAGVYQCTATNGVG 85
+G Y C A + +G
Sbjct: 165 KLSDSGRYDCEAASRIG 181
>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5S|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 394
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 50/122 (40%), Gaps = 19/122 (15%)
Query: 30 LECKASGNPVPSIIWSKKDSSL-----------PSGEKSLEGFSITLEKVDRHQAGVYQC 78
+ECKASGNP+P IIW + D + G+ F + + H A VY C
Sbjct: 30 IECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVH-AQVYAC 88
Query: 79 TATNGVGDPVTVDMTLEVLCKILPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPV 138
A N G ++ D+ + + + + E V R + V +C + V D V
Sbjct: 89 LARNQFGSIISRDVHVRAVVAQYYEAD-------VNKEHVIRGNSAVIKCLIPSFVADFV 141
Query: 139 TV 140
V
Sbjct: 142 EV 143
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Query: 21 TVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTA 80
TV G C+ +GNP+ ++ W K ++ E L +E V + G+YQC
Sbjct: 324 TVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESVLR-----IESVKKEDKGMYQCFV 378
Query: 81 TN 82
N
Sbjct: 379 RN 380
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 27/67 (40%), Gaps = 9/67 (13%)
Query: 27 TITLECKASGNPVPSIIW--------SKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQC 78
TI+L C A G P PS W K+ L K + G I + V +G Y C
Sbjct: 235 TISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAV-VEDSGKYLC 293
Query: 79 TATNGVG 85
N VG
Sbjct: 294 VVNNSVG 300
>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure
Length = 772
Score = 43.1 bits (100), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 5/85 (5%)
Query: 4 LQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSL--PSGEKSLEG- 60
L+ V P+I + N ++ G +I + C ASGNP P I+W K + +L SG +G
Sbjct: 662 LERVAPTITGNLENQTTSI--GESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGN 719
Query: 61 FSITLEKVDRHQAGVYQCTATNGVG 85
++T+ +V + G+Y C A + +G
Sbjct: 720 RNLTIRRVRKEDEGLYTCQACSVLG 744
Score = 30.4 bits (67), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 38/103 (36%), Gaps = 6/103 (5%)
Query: 25 GGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGV 84
G + + K G P P I W K L S G +T+ +V G Y TN +
Sbjct: 345 GERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGHVLTIMEVSERDTGNYTVILTNPI 404
Query: 85 GDPVTVDMTLEVLCKILPSGEKSLEGFSITLEKVDRHQAGVYQ 127
+ V+ GEKSL + VD +Q G Q
Sbjct: 405 SKEKQSHVVSLVVYVPPQIGEKSL------ISPVDSYQYGTTQ 441
>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human
Palladin
Length = 110
Score = 42.7 bits (99), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 9/96 (9%)
Query: 18 GQLTVRKGGTITLECKASGNPVPSIIWS------KKDSSLPSGEKSLEGFSITLEKVDRH 71
G LTV++G ++CK SG P P + W + DS+ + S+ +E V
Sbjct: 17 GDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSR 76
Query: 72 QAGVYQCTATNGVGDPVTVDMTLEVLCKILPSGEKS 107
AG+Y C ATN G +LE++ SG S
Sbjct: 77 DAGIYTCIATNRAGQ---NSFSLELVVAAKESGPSS 109
>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Chicken Receptor Protein Tyrosine Phosphatase Sigma
Length = 210
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 56/121 (46%), Gaps = 11/121 (9%)
Query: 25 GGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQA-------GVYQ 77
GG + C+A+G+P P + W+KK + S F + V R Q +Y+
Sbjct: 21 GGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENIYE 80
Query: 78 CTATNGVGDPVTVDMTLEVLCK-ILPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGD 136
C A N G+ VTV L VL + LP G +++ L+ V+R + C A+ G D
Sbjct: 81 CVAQNPHGE-VTVHAKLTVLREDQLPPGFPNID-MGPQLKVVERTRTATMLCAAS-GNPD 137
Query: 137 P 137
P
Sbjct: 138 P 138
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Query: 22 VRKGGTITLECKASGNPVPSIIWSKK----DSSLPSGE-KSLEGFSITLEKVDRHQAGVY 76
V + T T+ C ASGNP P I W K D S +G K L + +E + G Y
Sbjct: 120 VERTRTATMLCAASGNPDPEITWFKDFLPVDPSTSNGRIKQLRSGGLQIESSEETDQGKY 179
Query: 77 QCTATNGVG 85
+C A+N G
Sbjct: 180 ECVASNSAG 188
>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex
With Fgf1
Length = 334
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 36/85 (42%), Gaps = 9/85 (10%)
Query: 20 LTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEG-------FSITLEKVDRHQ 72
L V T+ C A+GNP PSI W K GE + G +S+ +E V
Sbjct: 133 LAVPAANTVRFRCPAAGNPTPSISWLKNGREF-RGEHRIGGIKLRHQQWSLVMESVVPSD 191
Query: 73 AGVYQCTATNGVGDPVTVDMTLEVL 97
G Y C N G + TL+VL
Sbjct: 192 RGNYTCVVENKFGS-IRQTYTLDVL 215
>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin
Length = 100
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 44/102 (43%), Gaps = 13/102 (12%)
Query: 6 MVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPS--------GEKS 57
M PP P N +++ +G ++ K SG P P + W ++ S EK
Sbjct: 3 MGPPRFIQVPEN--MSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKG 60
Query: 58 LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCK 99
L S+ E V AG Y C A N G+ T + L+VL K
Sbjct: 61 LH--SLIFEVVRASDAGAYACVAKNRAGE-ATFTVQLDVLAK 99
>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab
Length = 241
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 36/85 (42%), Gaps = 9/85 (10%)
Query: 20 LTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEG-------FSITLEKVDRHQ 72
L V T+ C A+GNP PSI W K GE + G +S+ +E V
Sbjct: 25 LAVPAANTVRFRCPAAGNPTPSISWLKNGREF-RGEHRIGGIKLRHQQWSLVMESVVPSD 83
Query: 73 AGVYQCTATNGVGDPVTVDMTLEVL 97
G Y C N G + TL+VL
Sbjct: 84 RGNYTCVVENKFGS-IRQTYTLDVL 107
>pdb|3K0W|A Chain A, Crystal Structure Of The Tandem Ig-Like C2-Type 2 Domains
Of The Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
Length = 218
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 5/107 (4%)
Query: 6 MVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITL 65
+VP + + + V G + L C+A+G+P W K + +P+G S +
Sbjct: 14 LVPRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNTS----ELIF 69
Query: 66 EKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCKILPSGEKSLEGFS 112
V AG Y C N + L+V C I S ++S++G S
Sbjct: 70 NAVHVKDAGFYVCRVNNNFTFEFSQWSQLDV-CDIPESFQRSVDGVS 115
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Query: 25 GGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATN 82
G T+ L+C A G+P+P W K + L K L + VD G Y C N
Sbjct: 133 GSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKL----YMVPYVDLEHQGTYWCHVYN 186
>pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7
Length = 99
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Query: 21 TVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK-----SLEGFSITLEKVDRHQAGV 75
TV KA+G P P+ IW+K ++ G K GF + + K D +G+
Sbjct: 17 TVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGL 76
Query: 76 YQCTATNGVG 85
Y CT N G
Sbjct: 77 YTCTVKNSAG 86
>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i
Length = 291
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 12/77 (15%)
Query: 21 TVRKGGTITLECKASGNPVPSIIWSK--KDSSLPSGEKSLEGF----------SITLEKV 68
T + G +TL C A G P+P I W + + G+KSL+G S+ ++ V
Sbjct: 11 TTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDV 70
Query: 69 DRHQAGVYQCTATNGVG 85
+G Y C A + +G
Sbjct: 71 KLSDSGRYDCEAASRIG 87
Score = 33.9 bits (76), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 24 KGGTITLECKASGNPVPSIIWSKKDSSLPS-GEKSLEGFS------ITLEKVDRHQAGVY 76
+G I + C NP SI W + LP+ +L+ +S + + + G Y
Sbjct: 114 EGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRY 173
Query: 77 QCTATNGVG 85
CTATN +G
Sbjct: 174 NCTATNHIG 182
>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii
Length = 389
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 12/77 (15%)
Query: 21 TVRKGGTITLECKASGNPVPSIIWSK--KDSSLPSGEKSLEGF----------SITLEKV 68
T + G +TL C A G P+P I W + + G+KSL+G S+ ++ V
Sbjct: 11 TTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDV 70
Query: 69 DRHQAGVYQCTATNGVG 85
+G Y C A + +G
Sbjct: 71 KLSDSGRYDCEAASRIG 87
Score = 33.9 bits (76), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 24 KGGTITLECKASGNPVPSIIWSKKDSSLPSGE-KSLEGFS------ITLEKVDRHQAGVY 76
+G I + C NP SI W + LP+ +L+ +S + + + G Y
Sbjct: 114 EGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRY 173
Query: 77 QCTATNGVG 85
CTATN +G
Sbjct: 174 NCTATNHIG 182
>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|B Chain B, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|C Chain C, Crystal Structure Of The N-Terminus Of Titin
Length = 194
Score = 39.3 bits (90), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 10/87 (11%)
Query: 20 LTVRKGGTITLECKASGNPVPSIIWSK-----KDSSLPSGEKSLEG--FSITLEKVDRHQ 72
+ V +G T T E SG PVP + W + S+LP + S +T+ V +
Sbjct: 15 VVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKAN 74
Query: 73 AGVYQCTATNGVGDPVTVDMTLEVLCK 99
+G Y ATNG G + T E+L K
Sbjct: 75 SGRYSLKATNGSGQATS---TAELLVK 98
Score = 35.0 bits (79), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 20 LTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSG---EKSLEG--FSITLEKVDRHQAG 74
+TVR+G + L+ + +G P P + + + + + S + S EG +S+ + + +G
Sbjct: 113 MTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSG 172
Query: 75 VYQCTATNGVG 85
Y ATN VG
Sbjct: 173 TYSVNATNSVG 183
>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|1YA5|B Chain B, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|2F8V|A Chain A, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|B Chain B, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|C Chain C, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|D Chain D, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
Length = 201
Score = 39.3 bits (90), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 10/87 (11%)
Query: 20 LTVRKGGTITLECKASGNPVPSIIWSK-----KDSSLPSGEKSLEG--FSITLEKVDRHQ 72
+ V +G T T E SG PVP + W + S+LP + S +T+ V +
Sbjct: 15 VVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKAN 74
Query: 73 AGVYQCTATNGVGDPVTVDMTLEVLCK 99
+G Y ATNG G + T E+L K
Sbjct: 75 SGRYSLKATNGSGQATS---TAELLVK 98
Score = 35.0 bits (79), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 20 LTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSG---EKSLEG--FSITLEKVDRHQAG 74
+TVR+G + L+ + +G P P + + + + + S + S EG +S+ + + +G
Sbjct: 113 MTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSG 172
Query: 75 VYQCTATNGVG 85
Y ATN VG
Sbjct: 173 TYSVNATNSVG 183
>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165
pdb|3LCY|B Chain B, Titin Ig Tandem Domains A164-A165
pdb|3LCY|C Chain C, Titin Ig Tandem Domains A164-A165
pdb|3LCY|D Chain D, Titin Ig Tandem Domains A164-A165
Length = 197
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Query: 9 PSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK---SLEGFSITL 65
P IR + +T + G L C+ G P+P I W + L K S +G + TL
Sbjct: 8 PGIRKEMKD--VTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTL 65
Query: 66 EKVDRHQA--GVYQCTATNGVGD 86
+ Q GVY C ATN VG+
Sbjct: 66 TVMTEEQEDEGVYTCIATNEVGE 88
Score = 30.0 bits (66), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 9/78 (11%)
Query: 25 GGTITLECKASGNPVPSIIWSKKDSSLPSGE----KSLEGFS-ITLEKVDRH-QAGVYQC 78
G T+ L G PVP++ W L + E ++ E ++ + ++ V R AG Y+
Sbjct: 118 GSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKV 177
Query: 79 TATNGVGDPVTVDMTLEV 96
+N G TVD L+V
Sbjct: 178 QLSNVFG---TVDAILDV 192
>pdb|2WP3|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWK|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
pdb|2WWM|D Chain D, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2Y9R|T Chain T, Crystal Structure Of The M10 Domain Of Titin
Length = 102
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 10/99 (10%)
Query: 7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWS---KKDSSLPSGEKSLEG--- 60
+PP I PS+ +++ +G +T+ C +G P P + WS +K S G +E
Sbjct: 6 IPPKIEALPSD--ISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDD 63
Query: 61 -FSITLEKVDRHQAGVYQCTATNGVG-DPVTVDMTLEVL 97
++ + V + G+Y + N G D TV++ + +
Sbjct: 64 LTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIRSI 102
>pdb|3KNB|A Chain A, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
pdb|3Q5O|A Chain A, Crystal Structure Of Human Titin Domain M10
pdb|3Q5O|B Chain B, Crystal Structure Of Human Titin Domain M10
Length = 100
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 10/99 (10%)
Query: 7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWS---KKDSSLPSGEKSLEG--- 60
+PP I PS+ +++ +G +T+ C +G P P + WS +K S G +E
Sbjct: 4 IPPKIEALPSD--ISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDD 61
Query: 61 -FSITLEKVDRHQAGVYQCTATNGVG-DPVTVDMTLEVL 97
++ + V + G+Y + N G D TV++ + +
Sbjct: 62 LTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIRSI 100
>pdb|1RHF|A Chain A, Crystal Structure Of Human Tyro3-D1d2
pdb|1RHF|B Chain B, Crystal Structure Of Human Tyro3-D1d2
Length = 182
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 9/73 (12%)
Query: 19 QLTVRKGGTITLECKASGNPVPSIIWSKKDS--------SLPSGEKSLEGFSITLEKVDR 70
+LTV +G + L C G P I W K + +P E+ GF ++L+ V+R
Sbjct: 11 KLTVSQGQPVKLNCSVEGXEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGF-LSLKSVER 69
Query: 71 HQAGVYQCTATNG 83
AG Y C +G
Sbjct: 70 SDAGRYWCQVEDG 82
>pdb|1GL4|B Chain B, Nidogen-1 G2PERLECAN IG3 COMPLEX
Length = 98
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 21 TVRKGGTITLECKA-SGNPVPSIIWSK-KDSSLPSGEKSLEGFSITLEKVDRHQAGVYQC 78
+VR G +T C A S +P +++W++ + LPS G +T+ V AG Y C
Sbjct: 21 SVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNGI-LTIRNVQPSDAGTYVC 79
Query: 79 TATN 82
T +N
Sbjct: 80 TGSN 83
>pdb|3BFO|A Chain A, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The
Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
pdb|3BFO|B Chain B, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The
Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
pdb|3BFO|C Chain C, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The
Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
pdb|3BFO|D Chain D, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The
Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
Length = 91
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Query: 25 GGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATN 82
G T+ L+C A G+P+P W K + L K L + VD G Y C N
Sbjct: 18 GSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKL----YMVPYVDLEHQGTYWCHVYN 71
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 36.2 bits (82), Expect = 0.008, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 19 QLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKS--LEGF---SITLEKVDRHQA 73
Q+ V +G T+ C+A G+P P+I+W L S + + L F ++ +
Sbjct: 394 QVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQVQDN 453
Query: 74 GVYQCTATNGVGD 86
G Y C A N G+
Sbjct: 454 GTYLCIAANAGGN 466
>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of
Titin
pdb|2J8O|A Chain A, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
pdb|2J8O|B Chain B, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
Length = 197
Score = 35.8 bits (81), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 47/100 (47%), Gaps = 12/100 (12%)
Query: 20 LTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSG--EKSLEGFS-----ITLEKVDRHQ 72
L VR TL CK +G+P P + W ++ + + + ++ F + + V
Sbjct: 14 LNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDD 73
Query: 73 AGVYQCTATNGVGDPV-TVDMTLEVLCKI-LPSGEKSLEG 110
A VYQ ATN G T + +EV KI LP K+LEG
Sbjct: 74 ATVYQVRATNQGGSVSGTASLEVEVPAKIHLP---KTLEG 110
Score = 26.6 bits (57), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 10/98 (10%)
Query: 7 VPPSI---RTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSK-KDSSLPSGEKSL---E 59
VP I +T G + +G ++++ SG P P I W K +D +G +
Sbjct: 98 VPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTR 157
Query: 60 GFS--ITLEKVDRHQAGVYQCTATNGVG-DPVTVDMTL 94
F+ + V+R AG Y A N G D TV++ +
Sbjct: 158 SFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDV 195
>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin
pdb|2NZI|B Chain B, Crystal Structure Of Domains A168-A170 From Titin
Length = 305
Score = 35.8 bits (81), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 12/101 (11%)
Query: 19 QLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSG--EKSLEGFS-----ITLEKVDRH 71
L VR TL CK +G+P P + W ++ + + + ++ F + + V
Sbjct: 13 NLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDD 72
Query: 72 QAGVYQCTATNGVGDPV-TVDMTLEVLCKI-LPSGEKSLEG 110
A VYQ ATN G T + +EV KI LP K+LEG
Sbjct: 73 DATVYQVRATNQGGSVSGTASLEVEVPAKIHLP---KTLEG 110
Score = 25.8 bits (55), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 18 GQLTVRKGGTITLECKASGNPVPSIIWSK-KDSSLPSGEKSL---EGFS--ITLEKVDRH 71
G + +G ++++ SG P P I W K +D +G + F+ + V+R
Sbjct: 112 GAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERK 171
Query: 72 QAGVYQCTATNGVG-DPVTVDMTL 94
AG Y A N G D TV++ +
Sbjct: 172 DAGFYVVCAKNRFGIDQKTVELDV 195
>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169
Length = 195
Score = 35.8 bits (81), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 47/100 (47%), Gaps = 12/100 (12%)
Query: 20 LTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSG--EKSLEGFS-----ITLEKVDRHQ 72
L VR TL CK +G+P P + W ++ + + + ++ F + + V
Sbjct: 12 LNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDD 71
Query: 73 AGVYQCTATNGVGDPV-TVDMTLEVLCKI-LPSGEKSLEG 110
A VYQ ATN G T + +EV KI LP K+LEG
Sbjct: 72 ATVYQVRATNQGGSVSGTASLEVEVPAKIHLP---KTLEG 108
Score = 26.6 bits (57), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 10/98 (10%)
Query: 7 VPPSI---RTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSK-KDSSLPSGEKSL---E 59
VP I +T G + +G ++++ SG P P I W K +D +G +
Sbjct: 96 VPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTR 155
Query: 60 GFS--ITLEKVDRHQAGVYQCTATNGVG-DPVTVDMTL 94
F+ + V+R AG Y A N G D TV++ +
Sbjct: 156 SFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDV 193
>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin
Length = 154
Score = 35.0 bits (79), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
Query: 19 QLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSG-----EKSLEG-FSITLEKVDRHQ 72
+ V +G +CK G P P ++W K D+ + + EG S+T+ +V
Sbjct: 50 DMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDD 109
Query: 73 AGVYQCTATNGVGDPV-TVDMTLEVLCK 99
Y C A N +G+ T ++ +E + K
Sbjct: 110 DAKYTCKAVNSLGEATCTAELLVETMGK 137
>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal
Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms
Resolution
Length = 154
Score = 35.0 bits (79), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
Query: 19 QLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSG-----EKSLEG-FSITLEKVDRHQ 72
+ V +G +CK G P P ++W K D+ + + EG S+T+ +V
Sbjct: 50 DMDVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDD 109
Query: 73 AGVYQCTATNGVGDPV-TVDMTLEVLCK 99
Y C A N +G+ T ++ +E + K
Sbjct: 110 DAKYTCKAVNSLGEATCTAELLVETMGK 137
>pdb|4EXP|X Chain X, Structure Of Mouse Interleukin-34 In Complex With Mouse
Fms
Length = 283
Score = 34.3 bits (77), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 11/98 (11%)
Query: 8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVP-SIIWSKKDSSL--PSGEKSLEGF--- 61
PP I+ PS +L +G + C A+ V ++I + D+ L P + +
Sbjct: 186 PPQIKLEPS--KLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKK 243
Query: 62 --SITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97
+++L VD AG+Y C A+N VG T M +V+
Sbjct: 244 VRALSLNAVDFQDAGIYSCVASNDVGT-RTATMNFQVV 280
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 7/91 (7%)
Query: 9 PSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKV 68
P+ PS +L V G T+TL C ++G S+ W S + + G ++T
Sbjct: 3 PAPVIEPSGPELVVEPGETVTLRCVSNG----SVEWDGPISPYWTLDPESPGSTLTTRNA 58
Query: 69 DRHQAGVYQCTATNGVGDPVTVDMTLEVLCK 99
G Y+CT + DP+ T+ + K
Sbjct: 59 TFKNTGTYRCTE---LEDPMAGSTTIHLYVK 86
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 70 RHQAGVYQCTATNG-VGDPVTV---DMTLEVLCKILPSGEKSLEGFSITLEKVDRHQAGV 125
R +A C+ATN VG V + D LE+ + +++L VD AG+
Sbjct: 200 RGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGI 259
Query: 126 YQCTATNGVGDPVTVDMTLEVL 147
Y C A+N VG T M +V+
Sbjct: 260 YSCVASNDVGT-RTATMNFQVV 280
>pdb|3EJJ|X Chain X, Structure Of M-Csf Bound To The First Three Domains Of Fms
Length = 289
Score = 34.3 bits (77), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 11/98 (11%)
Query: 8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVP-SIIWSKKDSSL--PSGEKSLEGF--- 61
PP I+ PS +L +G + C A+ V ++I + D+ L P + +
Sbjct: 186 PPQIKLEPS--KLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKK 243
Query: 62 --SITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97
+++L VD AG+Y C A+N VG T M +V+
Sbjct: 244 VRALSLNAVDFQDAGIYSCVASNDVGT-RTATMNFQVV 280
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 7/91 (7%)
Query: 9 PSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKV 68
P+ PS +L V G T+TL C ++G S+ W S + + G ++T
Sbjct: 3 PAPVIEPSGPELVVEPGETVTLRCVSNG----SVEWDGPISPYWTLDPESPGSTLTTRNA 58
Query: 69 DRHQAGVYQCTATNGVGDPVTVDMTLEVLCK 99
G Y+CT + DP+ T+ + K
Sbjct: 59 TFKNTGTYRCTE---LEDPMAGSTTIHLYVK 86
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 70 RHQAGVYQCTATNG-VGDPVTV---DMTLEVLCKILPSGEKSLEGFSITLEKVDRHQAGV 125
R +A C+ATN VG V + D LE+ + +++L VD AG+
Sbjct: 200 RGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGI 259
Query: 126 YQCTATNGVGDPVTVDMTLEVL 147
Y C A+N VG T M +V+
Sbjct: 260 YSCVASNDVGT-RTATMNFQVV 280
>pdb|1NBQ|A Chain A, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
pdb|1NBQ|B Chain B, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
Length = 209
Score = 33.9 bits (76), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 39/99 (39%), Gaps = 19/99 (19%)
Query: 6 MVPPSIRTS--PSNGQLTVRKGGTITLEC-KASGNPVPSIIWSKKDSSLPSGEKSLEGFS 62
+VPPS T PS+ + G L C + G+P W K +P+ KS FS
Sbjct: 105 LVPPSKPTVNIPSSATI----GNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFS 160
Query: 63 ------------ITLEKVDRHQAGVYQCTATNGVGDPVT 89
+ + + G Y C A NG G P+T
Sbjct: 161 NSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMT 199
Score = 27.3 bits (59), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 12/52 (23%)
Query: 100 ILPSGEKSLEGFS------------ITLEKVDRHQAGVYQCTATNGVGDPVT 139
++P+ KS FS + + + G Y C A NG G P+T
Sbjct: 148 VMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMT 199
>pdb|4FMF|A Chain A, Crystal Structure Of Human Nectin-1 Full Ectodomain
(D1-D3)
pdb|4FMF|B Chain B, Crystal Structure Of Human Nectin-1 Full Ectodomain
(D1-D3)
pdb|4FMF|C Chain C, Crystal Structure Of Human Nectin-1 Full Ectodomain
(D1-D3)
pdb|4FMF|D Chain D, Crystal Structure Of Human Nectin-1 Full Ectodomain
(D1-D3)
Length = 313
Score = 33.9 bits (76), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 28 ITLECKASGNP-VPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVG 85
+ L CKA NP W+ + SLP G ++ ++ AG Y C ATN +G
Sbjct: 235 VKLTCKADANPPATEYHWTTLNGSLPKGVEAQNRTLFFKGPINYSLAGTYICEATNPIG 293
>pdb|3SKU|E Chain E, Herpes Simplex Virus Glycoprotein D Bound To The Human
Receptor Nectin-1
pdb|3SKU|D Chain D, Herpes Simplex Virus Glycoprotein D Bound To The Human
Receptor Nectin-1
pdb|3SKU|F Chain F, Herpes Simplex Virus Glycoprotein D Bound To The Human
Receptor Nectin-1
Length = 319
Score = 33.9 bits (76), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 28 ITLECKASGNP-VPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVG 85
+ L CKA NP W+ + SLP G ++ ++ AG Y C ATN +G
Sbjct: 235 VKLTCKADANPPATEYHWTTLNGSLPKGVEAQNRTLFFKGPINYSLAGTYICEATNPIG 293
>pdb|2KKQ|A Chain A, Solution Nmr Structure Of The Ig-Like C2-Type 2 Domain
Of Human Myotilin. Northeast Structural Genomics Target
Hr3158
Length = 116
Score = 33.9 bits (76), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Query: 22 VRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGF-------SITLEKVDRHQAG 74
V +G ++ LEC+ S P P + W + + + + + ++ ++ V++ AG
Sbjct: 27 VLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAG 86
Query: 75 VYQCTATNGVG 85
Y +A N G
Sbjct: 87 WYTVSAVNEAG 97
>pdb|3ALP|A Chain A, Cell Adhesion Protein
pdb|3ALP|B Chain B, Cell Adhesion Protein
pdb|3U83|A Chain A, Crystal Structure Of Nectin-1
Length = 331
Score = 33.5 bits (75), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 28 ITLECKASGNP-VPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVG 85
+ L CKA NP W+ + SLP G ++ ++ AG Y C ATN +G
Sbjct: 250 VKLTCKADANPPATEYHWTTLNGSLPKGVEAQNRTLFFKGPINYSLAGTYICEATNPIG 308
>pdb|2Y25|A Chain A, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|B Chain B, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|C Chain C, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|D Chain D, Crystal Structure Of The Myomesin Domains My11-My13
Length = 317
Score = 33.5 bits (75), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 7/84 (8%)
Query: 20 LTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFS------ITLEKVDRHQA 73
+T+++G + L C G+P P + W K + +L S + F T+ V +
Sbjct: 232 VTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADS 291
Query: 74 GVYQCTATNGVGDPVTVDMTLEVL 97
G Y N G T D T+ V
Sbjct: 292 GKYGLVVKNKYGSE-TSDFTVSVF 314
>pdb|3U82|B Chain B, Binding Of Herpes Simplex Virus Glycoprotein D To Nectin-1
Exploits Host Cell Adhesion
Length = 317
Score = 33.5 bits (75), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 28 ITLECKASGNP-VPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVG 85
+ L CKA NP W+ + SLP G ++ ++ AG Y C ATN +G
Sbjct: 236 VKLTCKADANPPATEYHWTTLNGSLPKGVEAQNRTLFFKGPINYSLAGTYICEATNPIG 294
>pdb|3CAF|A Chain A, Crystal Structure Of Hfgfr2 D2 Domain
pdb|3CU1|A Chain A, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3CU1|C Chain C, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3EUU|A Chain A, Crystal Structure Of The Fgfr2 D2 Domain
pdb|3EUU|B Chain B, Crystal Structure Of The Fgfr2 D2 Domain
Length = 100
Score = 32.7 bits (73), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 6/67 (8%)
Query: 25 GGTITLECKASGNPVPSIIWSKKDSSLPSGEK------SLEGFSITLEKVDRHQAGVYQC 78
T+ C A GNP+P++ W K + + +S+ +E V G Y C
Sbjct: 23 ANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTC 82
Query: 79 TATNGVG 85
N G
Sbjct: 83 VVENEYG 89
>pdb|1WVZ|A Chain A, Solution Structure Of The D2 Domain Of The Fibroblast
Growth Factor
Length = 104
Score = 32.7 bits (73), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 6/67 (8%)
Query: 25 GGTITLECKASGNPVPSIIWSKKDSSLPSGEK------SLEGFSITLEKVDRHQAGVYQC 78
T+ C A GNP+P++ W K + + +S+ +E V G Y C
Sbjct: 27 ANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTC 86
Query: 79 TATNGVG 85
N G
Sbjct: 87 VVENEYG 93
>pdb|3DAR|A Chain A, Crystal Structure Of D2 Domain From Human Fgfr2
pdb|3DAR|B Chain B, Crystal Structure Of D2 Domain From Human Fgfr2
Length = 105
Score = 32.7 bits (73), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 6/67 (8%)
Query: 25 GGTITLECKASGNPVPSIIWSKKDSSLPSGEK------SLEGFSITLEKVDRHQAGVYQC 78
T+ C A GNP+P++ W K + + +S+ +E V G Y C
Sbjct: 28 ANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTC 87
Query: 79 TATNGVG 85
N G
Sbjct: 88 VVENEYG 94
>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin
Complex
pdb|1E0O|D Chain D, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin
Complex
Length = 219
Score = 32.7 bits (73), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 8/72 (11%)
Query: 21 TVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGF-------SITLEKVDRHQA 73
V T+ C A GNP+P++ W K E + G+ S+ +E V
Sbjct: 21 AVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQ-EHRIGGYKVRNQHWSLIMESVVPSDK 79
Query: 74 GVYQCTATNGVG 85
G Y C N G
Sbjct: 80 GNYTCVVENEYG 91
>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|F Chain F, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|G Chain G, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|H Chain H, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
Length = 220
Score = 32.7 bits (73), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 8/72 (11%)
Query: 21 TVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGF-------SITLEKVDRHQA 73
V T+ C A GNP+P++ W K E + G+ S+ +E V
Sbjct: 22 AVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQ-EHRIGGYKVRNQHWSLIMESVVPSDK 80
Query: 74 GVYQCTATNGVG 85
G Y C N G
Sbjct: 81 GNYTCVVENEYG 92
>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
pdb|2FDB|R Chain R, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
Length = 220
Score = 32.7 bits (73), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 8/68 (11%)
Query: 25 GGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGF-------SITLEKVDRHQAGVYQ 77
T+ C A GNP+P++ W K E + G+ S+ +E V G Y
Sbjct: 24 ANTVKFRCPAGGNPMPTMRWLKNGKEFKQ-EHRIGGYKVRNQHWSLIMESVVPSDKGNYT 82
Query: 78 CTATNGVG 85
C N G
Sbjct: 83 CVVENEYG 90
>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor
2 (Fgfr2) In Complex With Fgf2
pdb|1II4|F Chain F, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor
2 (Fgfr2) In Complex With Fgf2
pdb|1II4|G Chain G, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor
2 (Fgfr2) In Complex With Fgf2
pdb|1II4|H Chain H, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor
2 (Fgfr2) In Complex With Fgf2
Length = 220
Score = 32.7 bits (73), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 8/72 (11%)
Query: 21 TVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGF-------SITLEKVDRHQA 73
V T+ C A GNP+P++ W K E + G+ S+ +E V
Sbjct: 22 AVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQ-EHRIGGYKVRNQHWSLIMESVVPSDK 80
Query: 74 GVYQCTATNGVG 85
G Y C N G
Sbjct: 81 GNYTCVVENEYG 92
>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor
2 (Fgfr2) In Complex With Fgf2
pdb|1IIL|F Chain F, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor
2 (Fgfr2) In Complex With Fgf2
pdb|1IIL|G Chain G, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor
2 (Fgfr2) In Complex With Fgf2
pdb|1IIL|H Chain H, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor
2 (Fgfr2) In Complex With Fgf2
Length = 220
Score = 32.7 bits (73), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 8/72 (11%)
Query: 21 TVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGF-------SITLEKVDRHQA 73
V T+ C A GNP+P++ W K E + G+ S+ +E V
Sbjct: 22 AVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQ-EHRIGGYKVRNQHWSLIMESVVPSDK 80
Query: 74 GVYQCTATNGVG 85
G Y C N G
Sbjct: 81 GNYTCVVENEYG 92
>pdb|2L7J|A Chain A, Solution Structure Of The Third Immunoglobulin-Like
Domain Of Nectin-1
Length = 95
Score = 32.7 bits (73), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 28 ITLECKASGNP-VPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVG 85
+ L CKA NP W+ + SLP G ++ + AG Y C ATN +G
Sbjct: 25 VKLTCKADANPPATEYHWTTLNGSLPKGVEAQNRTLFFRGPITYSLAGTYICEATNPIG 83
>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring P253r Apert Mutation
Length = 231
Score = 32.3 bits (72), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 8/72 (11%)
Query: 21 TVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGF-------SITLEKVDRHQA 73
V T+ C A GNP+P++ W K E + G+ S+ +E V
Sbjct: 30 AVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQ-EHRIGGYKVRNQHWSLIMESVVPSDK 88
Query: 74 GVYQCTATNGVG 85
G Y C N G
Sbjct: 89 GNYTCVVENEYG 100
Score = 25.8 bits (55), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 33/87 (37%), Gaps = 18/87 (20%)
Query: 15 PSNGQLTVRKGGTITLECKASGNPVPSIIWSK---KDSS------LP-------SGEKSL 58
P+N V GG + CK + P I W K K+ S LP SG S
Sbjct: 125 PANASTVV--GGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSS 182
Query: 59 EGFSITLEKVDRHQAGVYQCTATNGVG 85
+ L V AG Y C +N +G
Sbjct: 183 NAEVLALFNVTEADAGEYICKVSNYIG 209
>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
pdb|3OJ2|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
Length = 231
Score = 32.3 bits (72), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 8/66 (12%)
Query: 27 TITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGF-------SITLEKVDRHQAGVYQCT 79
T+ C A GNP+P++ W K E + G+ S+ +E V G Y C
Sbjct: 36 TVKFRCPAGGNPMPTMRWLKNGKEFKQ-EHRIGGYKVRNQHWSLIMESVVPSDKGNYTCV 94
Query: 80 ATNGVG 85
N G
Sbjct: 95 VENEYG 100
Score = 25.8 bits (55), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 33/87 (37%), Gaps = 18/87 (20%)
Query: 15 PSNGQLTVRKGGTITLECKASGNPVPSIIWSK---KDSS------LP-------SGEKSL 58
P+N V GG + CK + P I W K K+ S LP SG S
Sbjct: 125 PANASTVV--GGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSS 182
Query: 59 EGFSITLEKVDRHQAGVYQCTATNGVG 85
+ L V AG Y C +N +G
Sbjct: 183 NAEVLALFNVTEADAGEYICKVSNYIG 209
>pdb|3SE8|L Chain L, Crystal Structure Of Broadly And Potently Neutralizing
Antibody Vrc03 In Complex With Hiv-1 Gp120
Length = 209
Score = 32.3 bits (72), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 45/99 (45%), Gaps = 20/99 (20%)
Query: 16 SNGQLTVRKGGTITLECKAS--GNP----------VPSIIW---SKKDSSLPS---GEKS 57
S G L++ G T TL CKAS GN VP ++ S++ S +P G S
Sbjct: 7 SPGILSLSPGETATLFCKASQGGNAMTWYQKRRGQVPRLLIYDTSRRASGVPDRFVGSGS 66
Query: 58 LEGFSITLEKVDRHQAGVYQCTATN--GVGDPVTVDMTL 94
F +T+ K+DR VY C G+G + V T+
Sbjct: 67 GTDFFLTINKLDREDFAVYYCQQFEFFGLGSELEVHRTV 105
Score = 26.2 bits (56), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 20/91 (21%)
Query: 15 PSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEK--------------SLE 59
PS+ QL K GT ++ C + P + + K D++L SG SL
Sbjct: 115 PSDEQL---KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLS 171
Query: 60 GFSITLEKVDRHQAGVYQCTATN-GVGDPVT 89
++TL K D + VY C T+ G+ PVT
Sbjct: 172 S-TLTLSKADYEKHKVYACEVTHQGLSSPVT 201
>pdb|3MJG|X Chain X, The Structure Of A Platelet Derived Growth Factor Receptor
Complex
pdb|3MJG|Y Chain Y, The Structure Of A Platelet Derived Growth Factor Receptor
Complex
Length = 289
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 18/91 (19%)
Query: 10 SIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWS--KKDS------------SLPSGE 55
SI S + Q VR+G ITL C GN V + W+ +K+S +P
Sbjct: 181 SINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHI 240
Query: 56 KSLEGFSITLEKVDRHQAGVYQCTATNGVGD 86
+S+ + + + +G Y C T V D
Sbjct: 241 RSI----LHIPSAELEDSGTYTCNVTESVND 267
>pdb|1U2H|A Chain A, X-Ray Structure Of The N-Terminally Truncated Human
Apep-1
Length = 99
Score = 31.6 bits (70), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 8/85 (9%)
Query: 7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSL----EG-- 60
PP+ + S + +VR+G + + + G P P + W + + ++ EG
Sbjct: 4 APPTFKVSLMD--QSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGL 61
Query: 61 FSITLEKVDRHQAGVYQCTATNGVG 85
+ + +R AG Y C A N G
Sbjct: 62 CRLRILAAERGDAGFYTCKAVNEYG 86
>pdb|3QQN|A Chain A, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
pdb|3QQN|B Chain B, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
Length = 137
Score = 31.6 bits (70), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 18/76 (23%)
Query: 25 GGTITLECKASGNPVPSIIW-------SKKDSSLPSGEK-----------SLEGFSITLE 66
GG++ L C+A G+PVP I W + S L G + +I+++
Sbjct: 36 GGSVELHCEAVGSPVPEIQWWFEGQGPNDIXSQLWDGARLDRVHIHATYHQHAASTISID 95
Query: 67 KVDRHQAGVYQCTATN 82
+ G Y+C A+N
Sbjct: 96 TLVEEDTGTYECRASN 111
>pdb|3QR2|A Chain A, Wild Type Cd147 Ig0 Domain
pdb|3QR2|B Chain B, Wild Type Cd147 Ig0 Domain
Length = 137
Score = 31.6 bits (70), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 18/76 (23%)
Query: 25 GGTITLECKASGNPVPSIIWSKKD-------SSLPSGEK-----------SLEGFSITLE 66
GG++ L C+A G+PVP I W + S L G + +I+++
Sbjct: 36 GGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISID 95
Query: 67 KVDRHQAGVYQCTATN 82
+ G Y+C A+N
Sbjct: 96 TLVEEDTGTYECRASN 111
>pdb|2R15|A Chain A, Crystal Structure Of The Myomesin Domains 12 And 13
pdb|2R15|B Chain B, Crystal Structure Of The Myomesin Domains 12 And 13
Length = 212
Score = 31.6 bits (70), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 7/84 (8%)
Query: 20 LTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFS------ITLEKVDRHQA 73
+T+++G + L C G+P P + W K + +L + F T+ V +
Sbjct: 127 VTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADS 186
Query: 74 GVYQCTATNGVGDPVTVDMTLEVL 97
G Y N G T D T+ V
Sbjct: 187 GKYGLVVKNKYGSE-TSDFTVSVF 209
>pdb|2YR3|A Chain A, Solution Structure Of The Fourth Ig-Like Domain From
Myosin Light Chain Kinase, Smooth Muscle
Length = 99
Score = 31.2 bits (69), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 24/67 (35%), Gaps = 2/67 (2%)
Query: 21 TVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDR--HQAGVYQC 78
V +G L+C G PVP I W + + E L D G Y C
Sbjct: 22 AVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVAELHIQDALPEDHGTYTC 81
Query: 79 TATNGVG 85
A N +G
Sbjct: 82 LAENALG 88
>pdb|2WV3|A Chain A, Neuroplastin-55 Binds To And Signals Through The
Fibroblast Growth Factor Receptor
Length = 190
Score = 31.2 bits (69), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 11/73 (15%)
Query: 24 KGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQA---------- 73
+G + CK+ G P P +W KK++ + + G + K + +
Sbjct: 106 EGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITED 165
Query: 74 -GVYQCTATNGVG 85
G Y+C ATN +G
Sbjct: 166 PGEYECNATNSIG 178
>pdb|3C60|B Chain B, Crystal Structure Of Mouse Mhc Class Ii I-Ab3K PEPTIDE
Complexed With Mouse Tcr Yae62
pdb|3C60|F Chain F, Crystal Structure Of Mouse Mhc Class Ii I-Ab3K PEPTIDE
Complexed With Mouse Tcr Yae62
pdb|3RGV|B Chain B, A Single Tcr Bound To Mhci And Mhc Ii Reveals Switchable
Tcr Conformers
Length = 236
Score = 30.8 bits (68), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 52/146 (35%), Gaps = 32/146 (21%)
Query: 25 GGTITLECKASGNPVPSIIWSKKDS-------------------SLPSGEK----SLEGF 61
GG +TL C + N ++ W ++D+ +P G K S E F
Sbjct: 14 GGKVTLSCNQTNNH-NNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENF 72
Query: 62 SITLEKVDRHQAGVYQCTATNGVGDPVTVDM-----TLEVLCKILPSGEKSLEGFSITLE 116
S+ LE Q VY C + + GD + LE L + P + F +
Sbjct: 73 SLILELATPSQTSVYFCASGDFWGDTLYFGAGTRLSVLEDLKNVFP---PEVAVFEPSEA 129
Query: 117 KVDRHQAGVYQCTATNGVGDPVTVDM 142
++ Q C AT D V +
Sbjct: 130 EISHTQKATLVCLATGFYPDHVELSW 155
>pdb|3RDT|B Chain B, Crystal Structure Of 809.B5 Tcr Complexed With Mhc Class
Ii I-Ab3K Peptide
Length = 241
Score = 30.8 bits (68), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 52/146 (35%), Gaps = 32/146 (21%)
Query: 25 GGTITLECKASGNPVPSIIWSKKDS-------------------SLPSGEK----SLEGF 61
GG +TL C + N ++ W ++D+ +P G K S E F
Sbjct: 15 GGKVTLSCNQTNNH-NNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENF 73
Query: 62 SITLEKVDRHQAGVYQCTATNGVGDPVTVDM-----TLEVLCKILPSGEKSLEGFSITLE 116
S+ LE Q VY C + + GD + LE L + P + F +
Sbjct: 74 SLILELATPSQTSVYFCASGDFWGDTLYFGAGTRLSVLEDLKNVFP---PEVAVFEPSEA 130
Query: 117 KVDRHQAGVYQCTATNGVGDPVTVDM 142
++ Q C AT D V +
Sbjct: 131 EISHTQKATLVCLATGFYPDHVELSW 156
>pdb|2LE9|A Chain A, Ragec2-S100a13 Tetrameric Complex
pdb|2LE9|D Chain D, Ragec2-S100a13 Tetrameric Complex
Length = 93
Score = 30.8 bits (68), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 11/82 (13%)
Query: 1 MEQLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEG 60
+E++Q+V P G V GGT+TL C+ P P I W K L
Sbjct: 1 LEEVQLV-----VEPEGG--AVAPGGTVTLTCEVPAQPSPQIHWMKDGVPL----PLPPS 49
Query: 61 FSITLEKVDRHQAGVYQCTATN 82
+ L ++ G Y C AT+
Sbjct: 50 PVLILPEIGPQDQGTYSCVATH 71
>pdb|3C5Z|B Chain B, Crystal Structure Of Mouse Mhc Class Ii I-Ab3K PEPTIDE
COMPLEXED WITH Mouse Tcr B3k506
pdb|3C5Z|F Chain F, Crystal Structure Of Mouse Mhc Class Ii I-Ab3K PEPTIDE
COMPLEXED WITH Mouse Tcr B3k506
Length = 240
Score = 30.4 bits (67), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 33/85 (38%), Gaps = 24/85 (28%)
Query: 25 GGTITLECKASGNPVPSIIWSKKDS-------------------SLPSGEK----SLEGF 61
GG +TL C + N + W ++D+ +P G K S E F
Sbjct: 14 GGKVTLSCHQTNNH-DYMYWYRQDTGHGLRLIHYSYVADSTEKGDIPDGYKASRPSQENF 72
Query: 62 SITLEKVDRHQAGVYQCTATNGVGD 86
S+ LE Q VY C + + G+
Sbjct: 73 SLILELASLSQTAVYFCASIDSSGN 97
>pdb|2ENS|A Chain A, Solution Structure Of The Third Ig-Like Domain From
Human Advanced Glycosylation End Product-Specific
Receptor
Length = 96
Score = 30.4 bits (67), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 11/82 (13%)
Query: 1 MEQLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEG 60
+E++Q+V P G V GGT+TL C+ P P I W K L
Sbjct: 8 LEEVQLV-----VEPEGG--AVAPGGTVTLTCEVPAQPSPQIHWMKDGVPL----PLPPS 56
Query: 61 FSITLEKVDRHQAGVYQCTATN 82
+ L ++ G Y C AT+
Sbjct: 57 PVLILPEIGPQDQGTYSCVATH 78
>pdb|3V6B|R Chain R, Vegfr-2VEGF-E Complex Structure
Length = 424
Score = 30.4 bits (67), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 38/103 (36%), Gaps = 6/103 (5%)
Query: 25 GGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGV 84
G + + K G P P I W K L S G +T+ +V G Y TN +
Sbjct: 215 GERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGHVLTIMEVSERDTGNYTVILTNPI 274
Query: 85 GDPVTVDMTLEVLCKILPSGEKSLEGFSITLEKVDRHQAGVYQ 127
+ V+ GEKSL + VD +Q G Q
Sbjct: 275 SKEKQSHVVSLVVYVPPQIGEKSL------ISPVDSYQYGTTQ 311
>pdb|2XY2|A Chain A, Crystal Structure Of Ncam2 Ig1-2
Length = 189
Score = 30.4 bits (67), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 19/98 (19%)
Query: 14 SPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSL---------EGFS-- 62
S S +L+V G + C A G P SI W P GEK + EG
Sbjct: 8 SLSKVELSV--GESKFFTCTAIGEP-ESIDWYN-----PQGEKIISTQRVVVQKEGVRSR 59
Query: 63 ITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCKI 100
+T+ + AG+Y+C AT+ G + LE+ K+
Sbjct: 60 LTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKL 97
Score = 30.0 bits (66), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 23/99 (23%)
Query: 62 SITLEKVDRH--QAGVYQCTATNGVGDPVTVDMTLEVLCKILPSGEKSL---------EG 110
+I+L KV+ ++ + CTA +G+P ++D P GEK + EG
Sbjct: 6 TISLSKVELSVGESKFFTCTA---IGEPESIDW-------YNPQGEKIISTQRVVVQKEG 55
Query: 111 FS--ITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 147
+T+ + AG+Y+C AT+ G + LE+
Sbjct: 56 VRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIY 94
>pdb|3O8X|C Chain C, Recognition Of Glycolipid Antigen By Inkt Cell Tcr
pdb|3O9W|C Chain C, Recognition Of A Glycolipid Antigen By The Inkt Cell Tcr
pdb|3QUX|C Chain C, Structure Of The Mouse Cd1d-Alpha-C-Galcer-Inkt Tcr
Complex
pdb|3QUY|C Chain C, Structure Of The Mouse Cd1d-Bnnh-Gsl-1'-Inkt Tcr Complex
pdb|3QUZ|C Chain C, Structure Of The Mouse Cd1d-Nu-Alpha-Galcer-Inkt Tcr
Complex
pdb|3RZC|C Chain C, Structure Of The Self-Antigen Igb3 Bound To Mouse Cd1d
And In Complex With The Inkt Tcr
pdb|3TA3|C Chain C, Structure Of The Mouse Cd1d-Glc-Dag-S2-Inkt Tcr Complex
pdb|3TVM|C Chain C, Structure Of The Mouse Cd1d-Smc124-Inkt Tcr Complex
pdb|3TVM|G Chain G, Structure Of The Mouse Cd1d-Smc124-Inkt Tcr Complex
pdb|3RTQ|C Chain C, Structure Of The Mouse Cd1d-Hs44-Inkt Tcr Complex
Length = 209
Score = 30.4 bits (67), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 20 LTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCT 79
L VR+G L+C S P + W K+D+ K L ++ +++ D+ G Y T
Sbjct: 12 LVVRQGENCVLQCNYSVTPDNHLRWFKQDTG-----KGLVSLTVLVDQKDKTSNGRYSAT 66
>pdb|2VAJ|A Chain A, Crystal Structure Of Ncam2 Ig1 (I4122 Cell Unit)
Length = 93
Score = 30.4 bits (67), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 23/99 (23%)
Query: 62 SITLEKVDRH--QAGVYQCTATNGVGDPVTVDMTLEVLCKILPSGEKSL---------EG 110
+I+L KV+ ++ + CTA +G+P ++D P GEK + EG
Sbjct: 4 TISLSKVELSVGESKFFTCTA---IGEPESIDW-------YNPQGEKIISTQRVVVQKEG 53
Query: 111 FS--ITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 147
+T+ + AG+Y+C AT+ G + LE+
Sbjct: 54 VRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIY 92
Score = 28.9 bits (63), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 17/77 (22%)
Query: 32 CKASGNPVPSIIWSKKDSSLPSGEKSL---------EGFS--ITLEKVDRHQAGVYQCTA 80
C A G P SI W P GEK + EG +T+ + AG+Y+C A
Sbjct: 22 CTAIGEP-ESIDWYN-----PQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQA 75
Query: 81 TNGVGDPVTVDMTLEVL 97
T+ G + LE+
Sbjct: 76 TDAKGQTQEATVVLEIY 92
>pdb|3HE6|D Chain D, Crystal Structure Of Mouse Cd1d-Alpha-Galactosylceramide
With Mouse Valpha14-Vbeta8.2 Nkt Tcr
pdb|3ARB|D Chain D, Ternary Crystal Structure Of The Nkt
Tcr-Cd1d-Alpha-Galactosylceramide Analogue-Och
pdb|3ARD|D Chain D, Ternary Crystal Structure Of The Mouse Nkt
Tcr-Cd1d-3'deoxy-Alpha- Galactosylceramide
pdb|3ARE|D Chain D, Ternary Crystal Structure Of The Mouse Nkt
Tcr-Cd1d-4'deoxy-Alpha- Galactosylceramide
pdb|3ARF|D Chain D, Ternary Crystal Structure Of The Mouse Nkt Tcr-Cd1d-C20:2
pdb|3ARG|D Chain D, Ternary Crystal Structure Of The Mouse Nkt Tcr-Cd1d-Alpha-
Glucosylceramide(C20:2)
pdb|3TN0|D Chain D, Structure Of Mouse Va14vb8.2nkt Tcr-Mouse
Cd1d-A-C-Galactosylceramide Complex
Length = 244
Score = 30.0 bits (66), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 41/108 (37%), Gaps = 31/108 (28%)
Query: 25 GGTITLECKASGNPVPSIIWSKKDS-------------------SLPSGEK----SLEGF 61
GG +TL C + N ++ W ++D+ +P G K S E F
Sbjct: 16 GGKVTLSCNQTNNH-NNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENF 74
Query: 62 SITLEKVDRHQAGVYQCTATNGVGD-------PVTVDMTLEVLCKILP 102
S+ LE Q VY C + + G+ P T LE L + P
Sbjct: 75 SLILELATPSQTSVYFCASGDAGGNYAEQFFGPGTRLTVLEDLKNVFP 122
>pdb|2WWK|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
F17r Mutant Complex
Length = 109
Score = 30.0 bits (66), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 32/83 (38%), Gaps = 7/83 (8%)
Query: 5 QMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK---SLEG- 60
Q PP P + V G L+C G P P ++W K L + E+ +G
Sbjct: 11 QGSPPCFLRRPR--PVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGA 68
Query: 61 -FSITLEKVDRHQAGVYQCTATN 82
+ L AGVY C A N
Sbjct: 69 EHGLLLTAALPTDAGVYVCRARN 91
>pdb|1LP9|F Chain F, Xenoreactive Complex Ahiii 12.2 Tcr Bound To
P1049HLA-A2.1
pdb|1LP9|M Chain M, Xenoreactive Complex Ahiii 12.2 Tcr Bound To
P1049HLA-A2.1
pdb|2J8U|F Chain F, Large Cdr3a Loop Alteration As A Function Of Mhc
Mutation.
pdb|2J8U|M Chain M, Large Cdr3a Loop Alteration As A Function Of Mhc
Mutation.
pdb|2JCC|F Chain F, Ah3 Recognition Of Mutant Hla-A2 W167a
pdb|2JCC|M Chain M, Ah3 Recognition Of Mutant Hla-A2 W167a
pdb|2UWE|F Chain F, Large Cdr3a Loop Alteration As A Function Of Mhc
Mutation
pdb|2UWE|M Chain M, Large Cdr3a Loop Alteration As A Function Of Mhc
Mutation
Length = 238
Score = 30.0 bits (66), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 24/83 (28%)
Query: 25 GGTITLECKASGNPVPSIIWSKKDS-------------------SLPSGEK----SLEGF 61
GG +TL C + N + W ++D+ +P G K S E F
Sbjct: 17 GGKVTLSCHQTNNH-DYMYWYRQDTGHGLRLIHYSYVADSTEKGDIPDGYKASRPSQENF 75
Query: 62 SITLEKVDRHQAGVYQCTATNGV 84
S+ LE Q VY C +++ V
Sbjct: 76 SLILELASLSQTAVYFCASSDWV 98
>pdb|3KNB|B Chain B, Crystal Structure Of The Titin C-Terminus In Complex
With Obscurin- Like 1
Length = 107
Score = 30.0 bits (66), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 32/83 (38%), Gaps = 7/83 (8%)
Query: 5 QMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK---SLEG- 60
Q PP P + V G L+C G P P ++W K L + E+ +G
Sbjct: 10 QGSPPCFLRFPR--PVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGA 67
Query: 61 -FSITLEKVDRHQAGVYQCTATN 82
+ L AGVY C A N
Sbjct: 68 EHGLLLTAALPTDAGVYVCRARN 90
>pdb|2LQR|A Chain A, Nmr Structure Of Ig3 Domain Of Palladin
Length = 108
Score = 30.0 bits (66), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 19 QLTVRKGGTITLECKASGNPVPSIIWSK 46
+ +G +T C+ +GNP P I W K
Sbjct: 16 HYKIFEGMPVTFTCRVAGNPKPKIYWFK 43
>pdb|3TO4|C Chain C, Structure Of Mouse
Valpha14vbeta2-Mousecd1d-Alpha-Galactosylceramide
Length = 212
Score = 30.0 bits (66), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 20 LTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCT 79
L VR+G L+C S P + W K+D+ K L ++ +++ D+ G Y T
Sbjct: 10 LVVRQGENSVLQCNYSVTPDNHLRWFKQDTG-----KGLVSLTVLVDQKDKTSNGRYSAT 64
>pdb|3R8B|B Chain B, Crystal Structure Of Staphylococcal Enterotoxin B In
Complex With An Affinity Matured Mouse Tcr Vbeta8.2
Protein, G5-8
pdb|3R8B|D Chain D, Crystal Structure Of Staphylococcal Enterotoxin B In
Complex With An Affinity Matured Mouse Tcr Vbeta8.2
Protein, G5-8
pdb|3R8B|F Chain F, Crystal Structure Of Staphylococcal Enterotoxin B In
Complex With An Affinity Matured Mouse Tcr Vbeta8.2
Protein, G5-8
pdb|3R8B|H Chain H, Crystal Structure Of Staphylococcal Enterotoxin B In
Complex With An Affinity Matured Mouse Tcr Vbeta8.2
Protein, G5-8
pdb|3R8B|J Chain J, Crystal Structure Of Staphylococcal Enterotoxin B In
Complex With An Affinity Matured Mouse Tcr Vbeta8.2
Protein, G5-8
pdb|3R8B|L Chain L, Crystal Structure Of Staphylococcal Enterotoxin B In
Complex With An Affinity Matured Mouse Tcr Vbeta8.2
Protein, G5-8
pdb|3R8B|N Chain N, Crystal Structure Of Staphylococcal Enterotoxin B In
Complex With An Affinity Matured Mouse Tcr Vbeta8.2
Protein, G5-8
pdb|3R8B|P Chain P, Crystal Structure Of Staphylococcal Enterotoxin B In
Complex With An Affinity Matured Mouse Tcr Vbeta8.2
Protein, G5-8
Length = 125
Score = 30.0 bits (66), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 32/82 (39%), Gaps = 23/82 (28%)
Query: 25 GGTITLECKASGNPVPSIIWSKKDS-------------------SLPSGEK----SLEGF 61
G +TL CK + + ++ W ++D+ +P G K S E F
Sbjct: 20 GEKVTLSCKQTNSYFNNMYWYRQDTGHELRLIFMSHGIRNVEKGDIPDGYKASRPSQENF 79
Query: 62 SITLEKVDRHQAGVYQCTATNG 83
S+ LE Q VY C + G
Sbjct: 80 SLILELATPSQTSVYFCASGGG 101
>pdb|1JCK|A Chain A, T-Cell Receptor Beta Chain Complexed With Sec3
Superantigen
pdb|1JCK|C Chain C, T-Cell Receptor Beta Chain Complexed With Sec3
Superantigen
pdb|1SBB|A Chain A, T-Cell Receptor Beta Chain Complexed With Superantigen Seb
pdb|1SBB|C Chain C, T-Cell Receptor Beta Chain Complexed With Superantigen Seb
pdb|1L0X|A Chain A, Tcr Beta Chain Complexed With Streptococcal Superantigen
Spea
pdb|1L0X|C Chain C, Tcr Beta Chain Complexed With Streptococcal Superantigen
Spea
pdb|1BEC|A Chain A, Beta Chain Of A T Cell Antigen Receptor
Length = 238
Score = 30.0 bits (66), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 42/108 (38%), Gaps = 31/108 (28%)
Query: 25 GGTITLECKASGNPVPSIIWSKKDS-------------------SLPSGEK----SLEGF 61
GG +TL C+ + N ++ W ++D+ +P G K S E F
Sbjct: 14 GGKVTLSCQQTNNHN-NMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQEQF 72
Query: 62 SITLEKVDRHQAGVYQCTATNGVGD-------PVTVDMTLEVLCKILP 102
S+ LE Q VY C + G G P T LE L ++ P
Sbjct: 73 SLILELATPSQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTP 120
>pdb|3HE6|C Chain C, Crystal Structure Of Mouse Cd1d-Alpha-Galactosylceramide
With Mouse Valpha14-Vbeta8.2 Nkt Tcr
pdb|3HE7|C Chain C, Crystal Structure Of Mouse Cd1d-Alpha-Galactosylceramide
With Mouse Valpha14-Vbeta7 Nkt Tcr
pdb|3ARB|C Chain C, Ternary Crystal Structure Of The Nkt
Tcr-Cd1d-Alpha-Galactosylceramide Analogue-Och
pdb|3ARD|C Chain C, Ternary Crystal Structure Of The Mouse Nkt
Tcr-Cd1d-3'deoxy-Alpha- Galactosylceramide
pdb|3ARE|C Chain C, Ternary Crystal Structure Of The Mouse Nkt
Tcr-Cd1d-4'deoxy-Alpha- Galactosylceramide
pdb|3ARF|C Chain C, Ternary Crystal Structure Of The Mouse Nkt
Tcr-Cd1d-C20:2
pdb|3ARG|C Chain C, Ternary Crystal Structure Of The Mouse Nkt
Tcr-Cd1d-Alpha- Glucosylceramide(C20:2)
pdb|3SCM|C Chain C, Crystal Structure Of Autoreactive-Valpha14-Vbeta6 Nkt
Tcr In Complex With Cd1d-Isoglobotrihexosylceramide
pdb|3SDA|C Chain C, Crystal Structure Of Autoreactive-Valpha14-Vbeta6 Nkt
Tcr In Complex With Cd1d-Beta-Galactosylceramide
pdb|3SDC|C Chain C, Crystal Structure Of Autoreactive-Valpha14-Vbeta6 Nkt
Tcr In Complex With Cd1d-Globotrihexosylceramide
pdb|3SDD|C Chain C, Crystal Structure Of Autoreactive-Valpha14-Vbeta6 Nkt
Tcr In Complex With Cd1d-Beta-Lactosylceramide
pdb|3TN0|C Chain C, Structure Of Mouse Va14vb8.2nkt Tcr-Mouse
Cd1d-A-C-Galactosylceramide Complex
pdb|3QI9|C Chain C, Crystal Structure Of Mouse
Cd1d-Alpha-Phosphotidylinositol With Mouse
Valpha14-Vbeta6 2a3-D Nkt Tcr
Length = 207
Score = 30.0 bits (66), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 20 LTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCT 79
L VR+G L+C S P + W K+D+ K L ++ +++ D+ G Y T
Sbjct: 10 LVVRQGENSVLQCNYSVTPDNHLRWFKQDTG-----KGLVSLTVLVDQKDKTSNGRYSAT 64
>pdb|1L0Y|A Chain A, T Cell Receptor Beta Chain Complexed With Superantigen
Spea Soaked With Zinc
pdb|1L0Y|C Chain C, T Cell Receptor Beta Chain Complexed With Superantigen
Spea Soaked With Zinc
Length = 236
Score = 30.0 bits (66), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 42/108 (38%), Gaps = 31/108 (28%)
Query: 25 GGTITLECKASGNPVPSIIWSKKDS-------------------SLPSGEK----SLEGF 61
GG +TL C+ + N ++ W ++D+ +P G K S E F
Sbjct: 14 GGKVTLSCQQTNNHN-NMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQEQF 72
Query: 62 SITLEKVDRHQAGVYQCTATNGVGD-------PVTVDMTLEVLCKILP 102
S+ LE Q VY C + G G P T LE L ++ P
Sbjct: 73 SLILELATPSQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTP 120
>pdb|2DM2|A Chain A, Solution Structure Of The First Ig Domain Of Human
Palladin
Length = 110
Score = 29.6 bits (65), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 19 QLTVRKGGTITLECKASGNPVPSIIWSK 46
+ +G +T C+ +GNP P I W K
Sbjct: 17 HYKIFEGMPVTFTCRVAGNPKPKIYWFK 44
>pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
pdb|1TNN|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
Length = 100
Score = 29.6 bits (65), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 20 LTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK 56
+TV +G + C G PVP++ W +K L + +
Sbjct: 18 MTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSAR 54
>pdb|2WP3|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWM|C Chain C, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
Length = 109
Score = 29.6 bits (65), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 32/83 (38%), Gaps = 7/83 (8%)
Query: 5 QMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK---SLEG- 60
Q PP P + V G L+C G P P ++W K L + E+ +G
Sbjct: 11 QGSPPCFLRFPR--PVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGA 68
Query: 61 -FSITLEKVDRHQAGVYQCTATN 82
+ L AGVY C A N
Sbjct: 69 EHGLLLTAALPTDAGVYVCRARN 91
>pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor
Receptor 2 In Complex With Fgf1
Length = 216
Score = 29.6 bits (65), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 25/72 (34%), Gaps = 8/72 (11%)
Query: 21 TVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGF-------SITLEKVDRHQA 73
V T+ C A GNP P+ W K E + G+ S+ E V
Sbjct: 22 AVPAANTVKFRCPAGGNPXPTXRWLKNGKEFKQ-EHRIGGYKVRNQHWSLIXESVVPSDK 80
Query: 74 GVYQCTATNGVG 85
G Y C N G
Sbjct: 81 GNYTCVVENEYG 92
>pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
pdb|1NCU|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
Length = 106
Score = 29.6 bits (65), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 20 LTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK 56
+TV +G + C G PVP++ W +K L + +
Sbjct: 24 MTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSAR 60
>pdb|2Q86|A Chain A, Structure Of The Mouse Invariant Nkt Cell Receptor
Valpha14
pdb|2Q86|C Chain C, Structure Of The Mouse Invariant Nkt Cell Receptor
Valpha14
Length = 229
Score = 29.6 bits (65), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 20 LTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCT 79
L VR+G L+C S P + W K+D+ K L ++ +++ D+ G Y T
Sbjct: 11 LVVRQGENCVLQCNYSVTPDNHLRWYKQDTG-----KGLVLLTVLVDQKDKTSNGRYSAT 65
>pdb|3AXL|B Chain B, Murine Valpha 10 Vbeta 8.1 T-Cell Receptor
pdb|3AXL|H Chain H, Murine Valpha 10 Vbeta 8.1 T-Cell Receptor
Length = 238
Score = 29.6 bits (65), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 50/145 (34%), Gaps = 31/145 (21%)
Query: 25 GGTITLECKASGNPVPSIIWSKKDS-------------------SLPSGEK----SLEGF 61
GG +TL C + N + W ++D+ +P G K S E F
Sbjct: 14 GGKVTLSCHQTNNH-DYMYWYRQDTGHGLRLIHYSYVADSTEKGDIPDGYKASRPSQENF 72
Query: 62 SITLEKVDRHQAGVYQCTATNG----VGDPVTVDMTLEVLCKILPSGEKSLEGFSITLEK 117
S+ LE Q VY C + G P T LE L + P + F + +
Sbjct: 73 SLILELASLSQTAVYFCASRLGGYEQYFGPGTRLTVLEDLKNVFP---PEVAVFEPSEAE 129
Query: 118 VDRHQAGVYQCTATNGVGDPVTVDM 142
+ Q C AT D V +
Sbjct: 130 ISHTQKATLVCLATGFYPDHVELSW 154
>pdb|3RUG|F Chain F, Crystal Structure Of Valpha10-Vbeta8.1 Nkt Tcr In Complex
With Cd1d- Alphaglucosylceramide (C20:2)
pdb|3RUG|H Chain H, Crystal Structure Of Valpha10-Vbeta8.1 Nkt Tcr In Complex
With Cd1d- Alphaglucosylceramide (C20:2)
Length = 241
Score = 29.6 bits (65), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 49/141 (34%), Gaps = 31/141 (21%)
Query: 25 GGTITLECKASGNPVPSIIWSKKDS-------------------SLPSGEK----SLEGF 61
GG +TL C + N + W ++D+ +P G K S E F
Sbjct: 16 GGKVTLSCHQTNNH-DYMYWYRQDTGHGLRLIHYSYVADSTEKGDIPDGYKASRPSQENF 74
Query: 62 SITLEKVDRHQAGVYQCTATNG----VGDPVTVDMTLEVLCKILPSGEKSLEGFSITLEK 117
S+ LE Q VY C + G P T LE L + P + F + +
Sbjct: 75 SLILELASLSQTAVYFCASRLGGYEQYFGPGTRLTVLEDLKNVFP---PEVAVFEPSEAE 131
Query: 118 VDRHQAGVYQCTATNGVGDPV 138
+ Q C AT D V
Sbjct: 132 ISHTQKATLVCLATGFYPDHV 152
>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain
Of Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
pdb|3OJV|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain
Of Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
Length = 226
Score = 29.3 bits (64), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 6/71 (8%)
Query: 21 TVRKGGTITLECKASGNPVPSIIWSKK------DSSLPSGEKSLEGFSITLEKVDRHQAG 74
V T+ +C +SG P P++ W K D + + +SI ++ V G
Sbjct: 28 AVPAAKTVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKG 87
Query: 75 VYQCTATNGVG 85
Y C N G
Sbjct: 88 NYTCIVENEYG 98
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 36/115 (31%), Gaps = 32/115 (27%)
Query: 21 TVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTA 80
TV G + CK +P P I W L+ + K+ Q
Sbjct: 127 TVALGSNVEFMCKVYSDPQPHIQW-------------LKHIEVNGSKIGPDNLPYVQILK 173
Query: 81 TNGVGDPVTVDMTLEVLCKILPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVG 135
T GV T D +EVL L V AG Y C A N +G
Sbjct: 174 TAGVN---TTDKEMEVL----------------HLRNVSFEDAGEYTCLAGNSIG 209
>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1CVS|D Chain D, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1FQ9|C Chain C, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin
Complex
pdb|1FQ9|D Chain D, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin
Complex
Length = 225
Score = 29.3 bits (64), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 6/70 (8%)
Query: 22 VRKGGTITLECKASGNPVPSIIWSKK------DSSLPSGEKSLEGFSITLEKVDRHQAGV 75
V T+ +C +SG P P++ W K D + + +SI ++ V G
Sbjct: 28 VPAAKTVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGN 87
Query: 76 YQCTATNGVG 85
Y C N G
Sbjct: 88 YTCIVENEYG 97
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 36/115 (31%), Gaps = 32/115 (27%)
Query: 21 TVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTA 80
TV G + CK +P P I W L+ + K+ Q
Sbjct: 126 TVALGSNVEFMCKVYSDPQPHIQW-------------LKHIEVNGSKIGPDNLPYVQILK 172
Query: 81 TNGVGDPVTVDMTLEVLCKILPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVG 135
T GV T D +EVL L V AG Y C A N +G
Sbjct: 173 TAGVN---TTDKEMEVL----------------HLRNVSFEDAGEYTCLAGNSIG 208
>pdb|1NUN|B Chain B, Crystal Structure Analysis Of The Fgf10-fgfr2b Complex
Length = 230
Score = 29.3 bits (64), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 25/72 (34%), Gaps = 8/72 (11%)
Query: 21 TVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGF-------SITLEKVDRHQA 73
V T+ C A GNP P+ W K E + G+ S+ E V
Sbjct: 29 AVPAANTVKFRCPAGGNPXPTXRWLKNGKEFKQ-EHRIGGYKVRNQHWSLIXESVVPSDK 87
Query: 74 GVYQCTATNGVG 85
G Y C N G
Sbjct: 88 GNYTCVVENEYG 99
>pdb|3IY4|A Chain A, Variable Domains Of The Computer Generated Model (Wam) Of
Fab 15 Fitted Into The Cryoem Reconstruction Of The
Virus- Fab 15 Complex
Length = 111
Score = 29.3 bits (64), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 37/94 (39%), Gaps = 25/94 (26%)
Query: 20 LTVRKGGTITLECKAS------------------GNPVPSIIW--SKKDSSLP---SGEK 56
L V G T+ CKAS G P +I+ S +S +P SG
Sbjct: 9 LAVSLGQRATISCKASQSVDYEGDSYMNWYQQKPGQPPKLLIYAASNLESGIPARFSGSG 68
Query: 57 SLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTV 90
S F++ + V+ A Y C +N GDP T
Sbjct: 69 SGTDFTLNIHPVEEEDAATYYCQQSN--GDPYTF 100
Score = 26.2 bits (56), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 103 SGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTV 140
SG S F++ + V+ A Y C +N GDP T
Sbjct: 65 SGSGSGTDFTLNIHPVEEEDAATYYCQQSN--GDPYTF 100
>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology
Modelling And Curve-Fitting To Experimental Solution
Scattering Data
Length = 642
Score = 29.3 bits (64), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 41 SIIWSKKDSSLPSGEK---SLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97
+ +W + SLP + S + ++TL V R+ G Y+C G+ + ++VD + V+
Sbjct: 319 TYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYEC----GIQNELSVDHSDPVI 374
Query: 98 CKIL 101
+L
Sbjct: 375 LNVL 378
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 6/63 (9%)
Query: 23 RKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATN 82
R G ++L C A+ NP W L G + + + +G+Y C A N
Sbjct: 394 RPGVNLSLSCHAASNPPAQYSW------LIDGNIQQHTQELFISNITEKNSGLYTCQANN 447
Query: 83 GVG 85
Sbjct: 448 SAS 450
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 44/115 (38%), Gaps = 12/115 (10%)
Query: 9 PSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK---SLEGFSITL 65
PSI SN V + C+ + +W SLP + S ++TL
Sbjct: 469 PSIS---SNNSKPVEDKDAVAFTCEPEAQNT-TYLWWVNGQSLPVSPRLQLSNGNRTLTL 524
Query: 66 EKVDRHQAGVYQCTATNGV----GDPVTVDMTLEVLCKIL-PSGEKSLEGFSITL 115
V R+ A Y C N V DPVT+D+ I+ P L G ++ L
Sbjct: 525 FNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYLSGANLNL 579
Score = 27.3 bits (59), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 6/58 (10%)
Query: 25 GGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATN 82
G + L C ++ NP P W + + +P + + + K+ + G Y C +N
Sbjct: 574 GANLNLSCHSASNPSPQYSW--RINGIPQQHTQV----LFIAKITPNNNGTYACFVSN 625
>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
pdb|1EVT|D Chain D, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
Length = 225
Score = 29.3 bits (64), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 6/70 (8%)
Query: 22 VRKGGTITLECKASGNPVPSIIWSKK------DSSLPSGEKSLEGFSITLEKVDRHQAGV 75
V T+ +C +SG P P++ W K D + + +SI ++ V G
Sbjct: 28 VPAAKTVKFKCPSSGTPNPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGN 87
Query: 76 YQCTATNGVG 85
Y C N G
Sbjct: 88 YTCIVENEYG 97
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 36/115 (31%), Gaps = 32/115 (27%)
Query: 21 TVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTA 80
TV G + CK +P P I W L+ + K+ Q
Sbjct: 126 TVALGSNVEFMCKVYSDPQPHIQW-------------LKHIEVNGSKIGPDNLPYVQILK 172
Query: 81 TNGVGDPVTVDMTLEVLCKILPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVG 135
T GV T D +EVL L V AG Y C A N +G
Sbjct: 173 TAGVN---TTDKEMEVL----------------HLRNVSFEDAGEYTCLAGNSIG 208
>pdb|1L6Z|A Chain A, Crystal Structure Of Murine Ceacam1a[1,4]: A Coronavirus
Receptor And Cell Adhesion Molecule In The Cea Family
Length = 216
Score = 28.9 bits (63), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 7/90 (7%)
Query: 21 TVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK---SLEGFSITLEKVDRHQAGVYQ 77
TV++ ++TL C S + +I W SL E+ S + ++ + R AG YQ
Sbjct: 121 TVKELDSVTLTC-LSNDIGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQ 179
Query: 78 CTATNGVGDPVTVDMTLEVL---CKILPSG 104
C +N V + + L+++ +++P G
Sbjct: 180 CEISNPVSVRRSNSIKLDIIFDPSRLVPRG 209
>pdb|3FMG|L Chain L, Structure Of Rotavirus Outer Capsid Protein Vp7 Trimer
In Co A Neutralizing Fab
Length = 211
Score = 28.9 bits (63), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 35/92 (38%), Gaps = 19/92 (20%)
Query: 11 IRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSK------------KDSSLP------ 52
I+ + S L+ G T+T+ C+ S N + W + K +LP
Sbjct: 2 IQMTQSPASLSASVGETVTITCRPSENIYSYLAWYQQKQGKSPQLLVYKAKTLPEGVPSR 61
Query: 53 -SGEKSLEGFSITLEKVDRHQAGVYQCTATNG 83
SG S FS+ + V G Y C NG
Sbjct: 62 FSGSGSGTHFSLKISSVQPEDFGTYYCQHHNG 93
>pdb|2OI9|B Chain B, Structure Of The 2cLDQL9 ALLOGENEIC COMPLEX
Length = 113
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 41/108 (37%), Gaps = 25/108 (23%)
Query: 17 NGQLTVRKGGTITLECKASGNPVPSIIWS------------KKDSSLP----------SG 54
+ ++TV +G ++ L CK S + P + W K S P
Sbjct: 7 DARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQLLLKYYSGDPVVQGVNGFEAEF 66
Query: 55 EKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCKILP 102
KS F + V R + VY C A +G +T +V+ +LP
Sbjct: 67 SKSNSSFHLRKASVHRSDSAVYFC-AVSGFASALTFGSGTKVI--VLP 111
>pdb|1GXE|A Chain A, Central Domain Of Cardiac Myosin Binding Protein C
Length = 139
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 25/132 (18%)
Query: 20 LTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCT 79
+ V G + L+ SG+P P++IW K ++ G K+
Sbjct: 28 IVVVAGNKLRLDVPISGDPAPTVIWQK---AITQGNKA-------------PARPAPDAP 71
Query: 80 ATNGVGDPVTVDMTL----EVLCKILPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVG 135
G D D L E ++ + ++S+ T+E ++ GVY T N VG
Sbjct: 72 EDTGDSDEWVFDKKLLCETEGRVRVETTKDRSI----FTVEGAEKEDEGVYTVTVKNPVG 127
Query: 136 DPVTVDMTLEVL 147
+ V++T++V+
Sbjct: 128 ED-QVNLTVKVI 138
>pdb|3TPU|A Chain A, 42f3 P5e8H2-Ld Complex
pdb|3TPU|C Chain C, 42f3 P5e8H2-Ld Complex
pdb|3TPU|G Chain G, 42f3 P5e8H2-Ld Complex
pdb|3TPU|M Chain M, 42f3 P5e8H2-Ld Complex
Length = 211
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 17 NGQLTVRKGGTITLECKASGNPVPSIIW 44
+ ++TV +G ++ L CK S + P + W
Sbjct: 11 DARVTVSEGASLQLRCKYSYSATPYLFW 38
>pdb|3O8X|D Chain D, Recognition Of Glycolipid Antigen By Inkt Cell Tcr
pdb|3O9W|D Chain D, Recognition Of A Glycolipid Antigen By The Inkt Cell Tcr
pdb|3QUX|D Chain D, Structure Of The Mouse Cd1d-Alpha-C-Galcer-Inkt Tcr
Complex
pdb|3QUY|D Chain D, Structure Of The Mouse Cd1d-Bnnh-Gsl-1'-Inkt Tcr Complex
pdb|3QUZ|D Chain D, Structure Of The Mouse Cd1d-Nu-Alpha-Galcer-Inkt Tcr
Complex
pdb|3RZC|D Chain D, Structure Of The Self-Antigen Igb3 Bound To Mouse Cd1d And
In Complex With The Inkt Tcr
pdb|3TA3|D Chain D, Structure Of The Mouse Cd1d-Glc-Dag-S2-Inkt Tcr Complex
pdb|3TVM|D Chain D, Structure Of The Mouse Cd1d-Smc124-Inkt Tcr Complex
pdb|3TVM|H Chain H, Structure Of The Mouse Cd1d-Smc124-Inkt Tcr Complex
pdb|3RTQ|D Chain D, Structure Of The Mouse Cd1d-Hs44-Inkt Tcr Complex
Length = 241
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 53/146 (36%), Gaps = 33/146 (22%)
Query: 25 GGTITLECKASGNPVPSIIWSKKDS-------------------SLPSGEK----SLEGF 61
GG +TL C + N ++ W ++D+ +P G K S E F
Sbjct: 17 GGKVTLSCNQTNNH-NNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENF 75
Query: 62 SITLEKVDRHQAGVYQCTA-----TNGVGDPVTVDMTLEVLCKILPSGEKSLEGFSITLE 116
S+ LE Q VY C + T G P T + LE L + P + F +
Sbjct: 76 SLILELATPSQTSVYFCASGDEGYTQYFG-PGTRLLVLEDLRNVTP---PKVSLFEPSKA 131
Query: 117 KVDRHQAGVYQCTATNGVGDPVTVDM 142
++ Q C AT D V +
Sbjct: 132 EISHTQKATLVCLATGFYPDHVELSW 157
>pdb|3C6L|B Chain B, Crystal Structure Of Mouse Mhc Class Ii I-Ab3K PEPTIDE
Complexed With Mouse Tcr 2w20
pdb|3C6L|F Chain F, Crystal Structure Of Mouse Mhc Class Ii I-Ab3K PEPTIDE
Complexed With Mouse Tcr 2w20
Length = 236
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 40/106 (37%), Gaps = 29/106 (27%)
Query: 25 GGTITLECKASGNPVPSIIWSKKDS-------------------SLPSGEK----SLEGF 61
GG +TL C + N ++ W ++D+ +P G K S E F
Sbjct: 14 GGKVTLSCNQTNNHN-NMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENF 72
Query: 62 SITLEKVDRHQAGVYQCTATNGVG-----DPVTVDMTLEVLCKILP 102
S+ LE Q VY C + + G P T LE L + P
Sbjct: 73 SLILELATPSQTSVYFCASGDAWGYEQYFGPGTRLTVLEDLRDVTP 118
>pdb|3E2H|B Chain B, Structure Of The M67 High-Affinity Mutant Of The 2c Tcr
In Complex With LdQL9
Length = 109
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 17 NGQLTVRKGGTITLECKASGNPVPSIIW 44
+ ++TV +G ++ L CK S + P + W
Sbjct: 6 DARVTVSEGASLQLRCKYSYSATPYLFW 33
>pdb|3TJH|C Chain C, 42f3-P3a1H2-Ld Complex
Length = 226
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 17 NGQLTVRKGGTITLECKASGNPVPSIIW 44
+ ++TV +G ++ L CK S + P + W
Sbjct: 16 DARVTVSEGASLQLRCKYSYSATPYLFW 43
>pdb|3TFK|C Chain C, 42f3-P4b10H2-Ld
Length = 212
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 17 NGQLTVRKGGTITLECKASGNPVPSIIW 44
+ ++TV +G ++ L CK S + P + W
Sbjct: 12 DARVTVSEGASLQLRCKYSYSATPYLFW 39
>pdb|2ICW|I Chain I, Crystal Structure Of A Complete Ternary Complex Between
Tcr, Superantigen, And Peptide-Mhc Class Ii Molecule
pdb|2ICW|K Chain K, Crystal Structure Of A Complete Ternary Complex Between
Tcr, Superantigen, And Peptide-Mhc Class Ii Molecule
Length = 110
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 17 NGQLTVRKGGTITLECKASGNPVPSIIW 44
+ ++TV +G ++ L CK S + P + W
Sbjct: 7 DARVTVSEGASLQLRCKYSYSATPYLFW 34
>pdb|3M45|A Chain A, Crystal Structure Of Ig1 Domain Of Mouse Syncam 2
pdb|3M45|B Chain B, Crystal Structure Of Ig1 Domain Of Mouse Syncam 2
pdb|3M45|C Chain C, Crystal Structure Of Ig1 Domain Of Mouse Syncam 2
pdb|3M45|D Chain D, Crystal Structure Of Ig1 Domain Of Mouse Syncam 2
Length = 108
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 30/79 (37%), Gaps = 14/79 (17%)
Query: 15 PSNGQLTVRKGGTITLECKASGNPVPSIIWSK--------------KDSSLPSGEKSLEG 60
P +TV +GGT L C+ N S+ WS +D+ + S
Sbjct: 11 PLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHE 70
Query: 61 FSITLEKVDRHQAGVYQCT 79
SI++ V G Y C+
Sbjct: 71 LSISVSDVSLSDEGQYTCS 89
>pdb|2E7L|A Chain A, Structure Of A High-Affinity Mutant Of The 2c Tcr In
Complex With LdQL9
pdb|2E7L|B Chain B, Structure Of A High-Affinity Mutant Of The 2c Tcr In
Complex With LdQL9
Length = 113
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 17 NGQLTVRKGGTITLECKASGNPVPSIIW 44
+ ++TV +G ++ L CK S + P + W
Sbjct: 7 DARVTVSEGASLQLRCKYSYSATPYLFW 34
>pdb|1TCR|A Chain A, Murine T-Cell Antigen Receptor 2c Clone
pdb|2CKB|A Chain A, Structure Of The 2cKBDEV8 COMPLEX
pdb|2CKB|C Chain C, Structure Of The 2cKBDEV8 COMPLEX
pdb|1G6R|A Chain A, A Functional Hot Spot For Antigen Recognition In A
Superagonist TcrMHC COMPLEX
pdb|1G6R|C Chain C, A Functional Hot Spot For Antigen Recognition In A
Superagonist TcrMHC COMPLEX
pdb|1MWA|A Chain A, 2cH-2kbm3DEV8 ALLOGENEIC COMPLEX
pdb|1MWA|C Chain C, 2cH-2kbm3DEV8 ALLOGENEIC COMPLEX
Length = 202
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 17 NGQLTVRKGGTITLECKASGNPVPSIIW 44
+ ++TV +G ++ L CK S + P + W
Sbjct: 7 DARVTVSEGASLQLRCKYSYSATPYLFW 34
>pdb|3TF7|C Chain C, 42f3 Ql9H2-Ld Complex
pdb|3TF7|G Chain G, 42f3 Ql9H2-Ld Complex
pdb|3TF7|I Chain I, 42f3 Ql9H2-Ld Complex
pdb|3TF7|K Chain K, 42f3 Ql9H2-Ld Complex
Length = 256
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 17 NGQLTVRKGGTITLECKASGNPVPSIIW 44
+ ++TV +G ++ L CK S + P + W
Sbjct: 10 DARVTVSEGASLQLRCKYSYSATPYLFW 37
Score = 26.2 bits (56), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 42/99 (42%), Gaps = 26/99 (26%)
Query: 10 SIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDS-------------------S 50
++ SP N ++TV G +TL C+ + N + W ++D+
Sbjct: 139 AVTQSPRN-KVTV-TGENVTLSCRQT-NSHNYMYWYRQDTGHELRLIYYSYGAGNLQIGD 195
Query: 51 LPSGEKSL----EGFSITLEKVDRHQAGVYQCTATNGVG 85
+P G K+ E F +TLE Q +Y C +++ G
Sbjct: 196 VPDGYKATRTTQEDFFLTLESASPSQTSLYFCASSDAPG 234
>pdb|2PXY|B Chain B, Crystal Structures Of Immune Receptor Complexes
pdb|2Z35|B Chain B, Crystal Structure Of Immune Receptor
Length = 111
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 24/84 (28%)
Query: 25 GGTITLECKASGNPVPSIIWSKKDS-------------------SLPSGEK----SLEGF 61
G +TL C + N ++ W ++D+ +P G K S E F
Sbjct: 14 GEKVTLSCNQTNNH-NNMYWYRQDTGHGLRLIYYSYGAGSTEKGDIPDGYKASRPSQENF 72
Query: 62 SITLEKVDRHQAGVYQCTATNGVG 85
S+TLE Q VY C + + G
Sbjct: 73 SLTLESATPSQTSVYFCASGDASG 96
Score = 26.2 bits (56), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 101 LPSGEK----SLEGFSITLEKVDRHQAGVYQCTATNGVG 135
+P G K S E FS+TLE Q VY C + + G
Sbjct: 58 IPDGYKASRPSQENFSLTLESATPSQTSVYFCASGDASG 96
>pdb|3E3Q|D Chain D, Structure Of The 3alpham13 High-Affinity Mutant Of The
2c Tcr In Complex With LdQL9
pdb|3E3Q|C Chain C, Structure Of The 3alpham13 High-Affinity Mutant Of The
2c Tcr In Complex With LdQL9
pdb|3E3Q|DD Chain d, Structure Of The 3alpham13 High-Affinity Mutant Of The
2c Tcr In Complex With LdQL9
pdb|3E3Q|I Chain I, Structure Of The 3alpham13 High-Affinity Mutant Of The
2c Tcr In Complex With LdQL9
pdb|3E3Q|M Chain M, Structure Of The 3alpham13 High-Affinity Mutant Of The
2c Tcr In Complex With LdQL9
pdb|3E3Q|R Chain R, Structure Of The 3alpham13 High-Affinity Mutant Of The
2c Tcr In Complex With LdQL9
pdb|3E3Q|V Chain V, Structure Of The 3alpham13 High-Affinity Mutant Of The
2c Tcr In Complex With LdQL9
pdb|3E3Q|Z Chain Z, Structure Of The 3alpham13 High-Affinity Mutant Of The
2c Tcr In Complex With LdQL9
Length = 109
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 17 NGQLTVRKGGTITLECKASGNPVPSIIW 44
+ ++TV +G ++ L CK S + P + W
Sbjct: 6 DARVTVSEGASLQLRCKYSYSATPYLFW 33
>pdb|2E7L|C Chain C, Structure Of A High-Affinity Mutant Of The 2c Tcr In
Complex With LdQL9
pdb|2E7L|D Chain D, Structure Of A High-Affinity Mutant Of The 2c Tcr In
Complex With LdQL9
pdb|2OI9|C Chain C, Structure Of The 2cLDQL9 ALLOGENEIC COMPLEX
Length = 121
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 36/100 (36%), Gaps = 24/100 (24%)
Query: 25 GGTITLECKASGNPVPSIIWSKKDSS-------------------LPSGEK----SLEGF 61
G +TL C + N ++ W ++D+ +P G K S E F
Sbjct: 16 GEKVTLSCNQTNNH-NNMYWYRQDTGHELRLIYYSYGAGSTEKGDIPDGYKASRPSQENF 74
Query: 62 SITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCKIL 101
S+TLE Q VY C + G L VL L
Sbjct: 75 SLTLESATPSQTSVYFCASGGGGTLYFGAGTRLSVLSSAL 114
>pdb|1I9E|A Chain A, Tcr Domain
Length = 115
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 17 NGQLTVRKGGTITLECKASGNPVPSIIW 44
+ ++TV +G ++ L CK S + P + W
Sbjct: 7 DARVTVSEGASLQLRCKYSYSATPYLFW 34
>pdb|2E7C|A Chain A, Solution Structure Of The 6th Ig-Like Domain From Human
Myosin-Binding Protein C, Fast-Type
Length = 118
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 8 PPSIRTSPSNGQLTVRK-GGTITLECKASGNPVPSIIWSKKDSSL 51
PP IR Q +RK G + L G P P ++W+K + L
Sbjct: 21 PPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPL 65
>pdb|2YKG|A Chain A, Structural Insights Into Rna Recognition By Rig-I
Length = 696
Score = 28.1 bits (61), Expect = 1.7, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 79 TATNGVGDPVTVDMTLEVLCKILPSGEKSL 108
TA+ GVGD T D L+ +CK+ S + S+
Sbjct: 180 TASVGVGDAKTTDEALDYICKLCASLDASV 209
>pdb|3UDW|A Chain A, Crystal Structure Of The Immunoreceptor Tigit In Complex
With Poliovirus Receptor (PvrCD155NECL-5) D1 Domain
pdb|3UDW|B Chain B, Crystal Structure Of The Immunoreceptor Tigit In Complex
With Poliovirus Receptor (PvrCD155NECL-5) D1 Domain
Length = 110
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 45/110 (40%), Gaps = 20/110 (18%)
Query: 5 QMVPPSIRTSPSNGQLTVRKGGTITLECKASGN--PVPSIIWSKKDSSL----------- 51
M+ +I T+ G ++ KGG+I L+C S V + W ++D L
Sbjct: 3 HMMTGTIETT---GNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHI 59
Query: 52 -PSGEKSLE---GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97
PS + + G +TL+ + + G Y C T + LEVL
Sbjct: 60 SPSFKDRVAPGPGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVL 109
>pdb|4F9P|D Chain D, Crystal Structure Of The Human Btn3a1 Ectodomain In
Complex With The 103.2 Single Chain Antibody
pdb|4F9P|C Chain C, Crystal Structure Of The Human Btn3a1 Ectodomain In
Complex With The 103.2 Single Chain Antibody
Length = 254
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 19/82 (23%)
Query: 20 LTVRKGGTITLECKASGNPVPSIIWSKKDS-------------------SLPSGEKSLEG 60
L+V G +++L C+AS + ++ W ++ S S SG S
Sbjct: 147 LSVTPGDSVSLSCRASQSISNNLHWYRQKSHESPRLLIKYASQSIFGIPSRFSGSGSGTE 206
Query: 61 FSITLEKVDRHQAGVYQCTATN 82
F++++ V+ G+Y C +N
Sbjct: 207 FTLSINSVETEDFGIYFCQQSN 228
>pdb|3Q0H|A Chain A, Structure Of T-Cell Immunoreceptor With Immunoglobulin And
Itim Domains (Tigit)
pdb|3Q0H|B Chain B, Structure Of T-Cell Immunoreceptor With Immunoglobulin And
Itim Domains (Tigit)
Length = 117
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 41/102 (40%), Gaps = 17/102 (16%)
Query: 13 TSPSNGQLTVRKGGTITLECKASGNP--VPSIIWSKKDSSL------------PSGEKSL 58
T + G ++ KGG+I L+C S V + W ++D L PS + +
Sbjct: 6 TIETTGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRV 65
Query: 59 E---GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97
G +TL+ + + G Y C T + LEVL
Sbjct: 66 APGPGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVL 107
>pdb|1ZOX|A Chain A, Clm-1 Mouse Myeloid Receptor Extracellular Domain
Length = 113
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 61 FSITLEKVDRHQAGVYQCTATNGVGDPV 88
F++T+E + AG+Y C T G DP+
Sbjct: 74 FTVTMEDLRMSDAGIYWCGITKGGLDPM 101
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 111 FSITLEKVDRHQAGVYQCTATNGVGDPV 138
F++T+E + AG+Y C T G DP+
Sbjct: 74 FTVTMEDLRMSDAGIYWCGITKGGLDPM 101
>pdb|3RQ3|A Chain A, Structure Of T-Cell Immunoreceptor With Immunoglobulin And
Itim Domains (Tigit) In Hexagonal Crystal Form
pdb|3RQ3|B Chain B, Structure Of T-Cell Immunoreceptor With Immunoglobulin And
Itim Domains (Tigit) In Hexagonal Crystal Form
Length = 116
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 41/102 (40%), Gaps = 17/102 (16%)
Query: 13 TSPSNGQLTVRKGGTITLECKASGN--PVPSIIWSKKDSSL------------PSGEKSL 58
T + G ++ KGG+I L+C S V + W ++D L PS + +
Sbjct: 5 TIETTGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRV 64
Query: 59 E---GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97
G +TL+ + + G Y C T + LEVL
Sbjct: 65 APGPGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVL 106
>pdb|3E2H|C Chain C, Structure Of The M67 High-Affinity Mutant Of The 2c Tcr
In Complex With LdQL9
Length = 110
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 24/82 (29%)
Query: 25 GGTITLECKASGNPVPSIIWSKKDSS-------------------LPSGEK----SLEGF 61
G +TL C + N ++ W ++D+ +P G K S E F
Sbjct: 15 GEKVTLSCNQTNNH-NNMYWYRQDTGHELRLIYYSYGAGSTEKGDIPDGYKASRPSQENF 73
Query: 62 SITLEKVDRHQAGVYQCTATNG 83
S+TLE Q VY C + G
Sbjct: 74 SLTLESATPSQTSVYFCASGGG 95
Score = 25.8 bits (55), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
Query: 101 LPSGEK----SLEGFSITLEKVDRHQAGVYQCTATNG 133
+P G K S E FS+TLE Q VY C + G
Sbjct: 59 IPDGYKASRPSQENFSLTLESATPSQTSVYFCASGGG 95
>pdb|3SJV|D Chain D, Crystal Structure Of The Rl42 Tcr In Complex With
Hla-B8-Flr
pdb|3SJV|I Chain I, Crystal Structure Of The Rl42 Tcr In Complex With
Hla-B8-Flr
pdb|3SJV|N Chain N, Crystal Structure Of The Rl42 Tcr In Complex With
Hla-B8-Flr
pdb|3SJV|S Chain S, Crystal Structure Of The Rl42 Tcr In Complex With
Hla-B8-Flr
pdb|3SKN|A Chain A, Crystal Structure Of The Rl42 Tcr Unliganded
pdb|3SKN|C Chain C, Crystal Structure Of The Rl42 Tcr Unliganded
pdb|3SKN|E Chain E, Crystal Structure Of The Rl42 Tcr Unliganded
pdb|3SKN|G Chain G, Crystal Structure Of The Rl42 Tcr Unliganded
Length = 203
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 18 GQLTVRKGGTITLECKASGNPVPSIIWSKKDS 49
G V +G T+ C S + S W ++DS
Sbjct: 11 GPFNVPEGATVAFNCTYSNSASQSFFWYRQDS 42
>pdb|2Z31|B Chain B, Crystal Structure Of Immune Receptor Complex
Length = 111
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 24/84 (28%)
Query: 25 GGTITLECKASGNPVPSIIWSKKDSS-------------------LPSGEK----SLEGF 61
G +TL C + N ++ W ++D+ +P G K S E F
Sbjct: 14 GEKVTLSCNQTNNH-NNMYWYRQDTGHGLRLIYYSYGAGSTEKGDIPDGYKASRPSQENF 72
Query: 62 SITLEKVDRHQAGVYQCTATNGVG 85
S+TLE Q VY C + + G
Sbjct: 73 SLTLESATPSQTSVYFCASGDASG 96
Score = 25.8 bits (55), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 101 LPSGEK----SLEGFSITLEKVDRHQAGVYQCTATNGVG 135
+P G K S E FS+TLE Q VY C + + G
Sbjct: 58 IPDGYKASRPSQENFSLTLESATPSQTSVYFCASGDASG 96
>pdb|4FRW|A Chain A, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|B Chain B, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|C Chain C, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|D Chain D, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|E Chain E, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|F Chain F, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
Length = 218
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 6 MVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIW 44
+VPP +P L +G T+ C A G+P PS+ W
Sbjct: 115 LVPPLPSLNPGPA-LEEGQGLTLAASCTAEGSPAPSVTW 152
>pdb|3UCR|A Chain A, Crystal Structure Of The Immunoreceptor Tigit Igv Domain
pdb|3UCR|B Chain B, Crystal Structure Of The Immunoreceptor Tigit Igv Domain
pdb|3UCR|C Chain C, Crystal Structure Of The Immunoreceptor Tigit Igv Domain
pdb|3UCR|D Chain D, Crystal Structure Of The Immunoreceptor Tigit Igv Domain
Length = 110
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 41/102 (40%), Gaps = 17/102 (16%)
Query: 13 TSPSNGQLTVRKGGTITLECKASGN--PVPSIIWSKKDSSL------------PSGEKSL 58
T + G ++ KGG+I L+C S V + W ++D L PS + +
Sbjct: 8 TIETTGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRV 67
Query: 59 E---GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97
G +TL+ + + G Y C T + LEVL
Sbjct: 68 APGPGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVL 109
>pdb|3MBE|D Chain D, Tcr 21.30 In Complex With Mhc Class Ii I-Ag7hel(11-27)
pdb|3MBE|H Chain H, Tcr 21.30 In Complex With Mhc Class Ii I-Ag7hel(11-27)
Length = 259
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 31/80 (38%), Gaps = 24/80 (30%)
Query: 25 GGTITLECKASGNPVPSIIWSKKDS-------------------SLPSGEK----SLEGF 61
GG +TL C + N + W ++D+ +P G K S E F
Sbjct: 16 GGKVTLSCHQTNNH-DYMYWYRQDTGHGLRLIHYSYVADSTEKGDIPDGYKASRPSQENF 74
Query: 62 SITLEKVDRHQAGVYQCTAT 81
S+ LE Q VY C ++
Sbjct: 75 SLILELASLSQTAVYFCASS 94
>pdb|3E3Q|E Chain E, Structure Of The 3alpham13 High-Affinity Mutant Of The
2c Tcr In Complex With LdQL9
pdb|3E3Q|F Chain F, Structure Of The 3alpham13 High-Affinity Mutant Of The
2c Tcr In Complex With LdQL9
pdb|3E3Q|EE Chain e, Structure Of The 3alpham13 High-Affinity Mutant Of The
2c Tcr In Complex With LdQL9
pdb|3E3Q|J Chain J, Structure Of The 3alpham13 High-Affinity Mutant Of The
2c Tcr In Complex With LdQL9
pdb|3E3Q|N Chain N, Structure Of The 3alpham13 High-Affinity Mutant Of The
2c Tcr In Complex With LdQL9
pdb|3E3Q|S Chain S, Structure Of The 3alpham13 High-Affinity Mutant Of The
2c Tcr In Complex With LdQL9
pdb|3E3Q|W Chain W, Structure Of The 3alpham13 High-Affinity Mutant Of The
2c Tcr In Complex With LdQL9
pdb|3E3Q|AA Chain a, Structure Of The 3alpham13 High-Affinity Mutant Of The
2c Tcr In Complex With LdQL9
Length = 111
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 24/82 (29%)
Query: 25 GGTITLECKASGNPVPSIIWSKKDSS-------------------LPSGEK----SLEGF 61
G +TL C + N ++ W ++D+ +P G K S E F
Sbjct: 16 GEKVTLSCNQTNNH-NNMYWYRQDTGHELRLIYYSYGAGSTEKGDIPDGYKASRPSQENF 74
Query: 62 SITLEKVDRHQAGVYQCTATNG 83
S+TLE Q VY C + G
Sbjct: 75 SLTLESATPSQTSVYFCASGGG 96
>pdb|2ARJ|L Chain L, Cd8alpha-Alpha In Complex With Yts 105.18 Fab
pdb|2ARJ|A Chain A, Cd8alpha-Alpha In Complex With Yts 105.18 Fab
Length = 211
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 14 SPSNGQLTVRKGGTITLECKASGNPVPSIIWSKK 47
SPS+ L V G +TL CKAS N +I W ++
Sbjct: 7 SPSS--LAVSAGERVTLNCKASQNVRNNIAWYQQ 38
>pdb|2Q86|B Chain B, Structure Of The Mouse Invariant Nkt Cell Receptor
Valpha14
pdb|2Q86|D Chain D, Structure Of The Mouse Invariant Nkt Cell Receptor
Valpha14
Length = 254
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 24/82 (29%)
Query: 25 GGTITLECKASGNPVPSIIWSKKDS-------------------SLPSGEK----SLEGF 61
GG +TL C + N ++ W ++D+ +P G K S E F
Sbjct: 16 GGKVTLSCNQTNNH-NNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENF 74
Query: 62 SITLEKVDRHQAGVYQCTATNG 83
S+ LE Q VY C + G
Sbjct: 75 SLILELATPSQTSVYFCASGGG 96
>pdb|1TCR|B Chain B, Murine T-Cell Antigen Receptor 2c Clone
pdb|2CKB|B Chain B, Structure Of The 2cKBDEV8 COMPLEX
pdb|2CKB|D Chain D, Structure Of The 2cKBDEV8 COMPLEX
pdb|1G6R|B Chain B, A Functional Hot Spot For Antigen Recognition In A
Superagonist TcrMHC COMPLEX
pdb|1G6R|D Chain D, A Functional Hot Spot For Antigen Recognition In A
Superagonist TcrMHC COMPLEX
pdb|1MWA|B Chain B, 2cH-2kbm3DEV8 ALLOGENEIC COMPLEX
pdb|1MWA|D Chain D, 2cH-2kbm3DEV8 ALLOGENEIC COMPLEX
Length = 237
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 24/82 (29%)
Query: 25 GGTITLECKASGNPVPSIIWSKKDS-------------------SLPSGEK----SLEGF 61
GG +TL C + N ++ W ++D+ +P G K S E F
Sbjct: 16 GGKVTLSCNQTNNH-NNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENF 74
Query: 62 SITLEKVDRHQAGVYQCTATNG 83
S+ LE Q VY C + G
Sbjct: 75 SLILELATPSQTSVYFCASGGG 96
>pdb|2E9W|A Chain A, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
pdb|2E9W|B Chain B, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
Length = 489
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 9/83 (10%)
Query: 8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEK 67
PPSI P L VR G I L C G + W+ + + K E + EK
Sbjct: 11 PPSIH--PGKSDLIVRVGDEIRLLCTDPG----FVKWTFEILDETNENKQNEWIT---EK 61
Query: 68 VDRHQAGVYQCTATNGVGDPVTV 90
+ G Y CT +G+ + + V
Sbjct: 62 AEATNTGKYTCTNKHGLSNSIYV 84
>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated
Protein Kinase And Immunoglobulin Domains
Length = 491
Score = 27.7 bits (60), Expect = 2.3, Method: Composition-based stats.
Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 5/69 (7%)
Query: 22 VRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLE-----GFSITLEKVDRHQAGVY 76
V +G + C+ + P + W K D L K ++ + +T+ +V G Y
Sbjct: 388 VGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEY 447
Query: 77 QCTATNGVG 85
A N G
Sbjct: 448 TVRAKNSYG 456
>pdb|1BWM|A Chain A, A Single-Chain T Cell Receptor
Length = 249
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 25/84 (29%)
Query: 25 GGTITLECKASGNPVPSIIWSKKDS-------------------SLPSGEK----SLEGF 61
GG +TL C + N ++ W ++D+ +P G K S E F
Sbjct: 14 GGKVTLSCNQTNNH-NNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENF 72
Query: 62 SITLEKVDRHQAGVYQCTATNGVG 85
S+ LE Q VY C A+ G G
Sbjct: 73 SLILELATPSQTSVYFC-ASGGQG 95
>pdb|2EC8|A Chain A, Crystal Structure Of The Exctracellular Domain Of The
Receptor Tyrosine Kinase, Kit
Length = 524
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 9/83 (10%)
Query: 8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEK 67
PPSI P L VR G I L C G + W+ + + K E + EK
Sbjct: 36 PPSIH--PGKSDLIVRVGDEIRLLCTDPG----FVKWTFEILDETNENKQNEWIT---EK 86
Query: 68 VDRHQAGVYQCTATNGVGDPVTV 90
+ G Y CT +G+ + + V
Sbjct: 87 AEATNTGKYTCTNKHGLSNSIYV 109
>pdb|1EPF|A Chain A, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|B Chain B, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|C Chain C, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|D Chain D, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
Length = 191
Score = 27.7 bits (60), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 15/74 (20%)
Query: 41 SIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQC--TATNGVGDPVTVDMTL--EV 96
S++W+ DSS ++T+ + AG+Y+C TA +G TV++ + ++
Sbjct: 53 SVVWNDDDSS-----------TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKL 101
Query: 97 LCKILPSGEKSLEG 110
+ K P+ ++ EG
Sbjct: 102 MFKNAPTPQEFKEG 115
>pdb|2X7L|L Chain L, Implications Of The Hiv-1 Rev Dimer Structure At 3.2a
Resolution For Multimeric Binding To The Rev Response
Element
pdb|2X7L|B Chain B, Implications Of The Hiv-1 Rev Dimer Structure At 3.2a
Resolution For Multimeric Binding To The Rev Response
Element
pdb|2X7L|D Chain D, Implications Of The Hiv-1 Rev Dimer Structure At 3.2a
Resolution For Multimeric Binding To The Rev Response
Element
pdb|2X7L|K Chain K, Implications Of The Hiv-1 Rev Dimer Structure At 3.2a
Resolution For Multimeric Binding To The Rev Response
Element
pdb|2X7L|F Chain F, Implications Of The Hiv-1 Rev Dimer Structure At 3.2a
Resolution For Multimeric Binding To The Rev Response
Element
pdb|2X7L|I Chain I, Implications Of The Hiv-1 Rev Dimer Structure At 3.2a
Resolution For Multimeric Binding To The Rev Response
Element
Length = 217
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 19/73 (26%)
Query: 25 GGTITLECKAS--------------GNPVPSIIWSKKD--SSLPS---GEKSLEGFSITL 65
GGT+T++C+AS G P +I+ + S +PS G S +++T+
Sbjct: 16 GGTVTIKCQASQSISSWLSWYQQKPGQPPKLLIYDASNLASGVPSRFMGSGSGTEYTLTI 75
Query: 66 EKVDRHQAGVYQC 78
V R A Y C
Sbjct: 76 SGVQREDAATYYC 88
>pdb|3R4D|A Chain A, Crystal Structure Of Mouse Coronavirus Receptor-Binding
Domain Complexed With Its Murine Receptor
pdb|3R4D|C Chain C, Crystal Structure Of Mouse Coronavirus Receptor-Binding
Domain Complexed With Its Murine Receptor
Length = 208
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 21 TVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK---SLEGFSITLEKVDRHQAGVYQ 77
TV++ ++TL C S + +I W SL E+ S + ++ + R AG YQ
Sbjct: 121 TVKELDSVTLTC-LSNDIGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQ 179
Query: 78 CTATNGVG 85
C +N V
Sbjct: 180 CEISNPVS 187
>pdb|3D85|A Chain A, Crystal Structure Of Il-23 In Complex With Neutralizing
Fab
Length = 214
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 21/90 (23%)
Query: 20 LTVRKGGTITLECKASGNPVPSIIWSKKDSS------LPSGEKSLEG------------- 60
L+V G ++L C+AS + + W ++ S + +S+ G
Sbjct: 11 LSVTPGDRVSLSCRASQSISDYLHWYRQKSHESPRLLIKYASQSISGIPSRFSGSGSGSD 70
Query: 61 FSITLEKVDRHQAGVYQCTATNGVGDPVTV 90
F++++ V+ GVY C NG P T
Sbjct: 71 FTLSINSVEPEDVGVYYC--QNGHSFPFTF 98
Score = 26.2 bits (56), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 20/91 (21%)
Query: 15 PSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEK--------------SLE 59
PS+ QL K GT ++ C + P + + K D++L SG SL
Sbjct: 120 PSDEQL---KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLS 176
Query: 60 GFSITLEKVDRHQAGVYQCTATN-GVGDPVT 89
++TL K D + VY C T+ G+ PVT
Sbjct: 177 S-TLTLSKADYEKHKVYACEVTHQGLSSPVT 206
>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
pdb|3UTO|B Chain B, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
Length = 573
Score = 27.7 bits (60), Expect = 2.6, Method: Composition-based stats.
Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 5/69 (7%)
Query: 22 VRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLE-----GFSITLEKVDRHQAGVY 76
V +G + C+ + P + W K D L K ++ + +T+ +V G Y
Sbjct: 494 VGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEY 553
Query: 77 QCTATNGVG 85
A N G
Sbjct: 554 TVRAKNSYG 562
>pdb|2O26|X Chain X, Structure Of A Class Iii Rtk Signaling Assembly
pdb|2O26|Y Chain Y, Structure Of A Class Iii Rtk Signaling Assembly
pdb|2O26|U Chain U, Structure Of A Class Iii Rtk Signaling Assembly
pdb|2O26|W Chain W, Structure Of A Class Iii Rtk Signaling Assembly
Length = 290
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 10/84 (11%)
Query: 8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSII-WSKKDSSLPSGEKSLEGFSITLE 66
PPSI P+ +L V G T++L C P + W+ K E + E
Sbjct: 12 PPSIH--PAQSELIVEAGDTLSLTCID-----PDFVRWTFKTYFNEMVENKKNEW--IQE 62
Query: 67 KVDRHQAGVYQCTATNGVGDPVTV 90
K + + G Y C+ +NG+ + V
Sbjct: 63 KAEATRTGTYTCSNSNGLTSSIYV 86
>pdb|1AFV|H Chain H, Hiv-1 Capsid Protein (P24) Complex With Fab25.3
pdb|1AFV|K Chain K, Hiv-1 Capsid Protein (P24) Complex With Fab25.3
Length = 220
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 18 GQLTVRKGGTITLECKASGNPVPS--IIWSKK 47
G + VR G ++ L CKASG S I W+K+
Sbjct: 8 GSVLVRPGASVKLSCKASGYTFTSSWIHWAKQ 39
>pdb|1BBJ|L Chain L, Crystal Structure Of A Chimeric Fab' Fragment Of An
Antibody Binding Tumour Cells
pdb|1BBJ|A Chain A, Crystal Structure Of A Chimeric Fab' Fragment Of An
Antibody Binding Tumour Cells
Length = 211
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 11 IRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKK 47
I+ + S L+V G T+T+ C+AS N ++ W ++
Sbjct: 2 IQMTQSPASLSVSVGETVTITCRASENIYSNLAWYQQ 38
>pdb|3RBG|A Chain A, Crystal Structure Analysis Of Class-I Mhc Restricted
T-Cell Associated Molecule
pdb|3RBG|B Chain B, Crystal Structure Analysis Of Class-I Mhc Restricted
T-Cell Associated Molecule
pdb|3RBG|C Chain C, Crystal Structure Analysis Of Class-I Mhc Restricted
T-Cell Associated Molecule
pdb|3RBG|D Chain D, Crystal Structure Analysis Of Class-I Mhc Restricted
T-Cell Associated Molecule
Length = 124
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 14/73 (19%)
Query: 20 LTVRKGGTITLECKASGNPVPSIIWSK--------------KDSSLPSGEKSLEGFSITL 65
+TV +G T+TL+C S S+ W K+S S SIT+
Sbjct: 11 ITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITV 70
Query: 66 EKVDRHQAGVYQC 78
V GVY+C
Sbjct: 71 PNVTLQDEGVYKC 83
>pdb|3SBW|C Chain C, Crystal Structure Of The Complex Between The Extracellular
Domains Of Mouse Pd-1 Mutant And Human Pd-L1
Length = 222
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 30 LECKASGNPVPSIIWSKKDSSLPSGE 55
L C+A G P +IW+ D + SG+
Sbjct: 136 LTCQAEGYPKAEVIWTSSDHQVLSGK 161
>pdb|2P1Y|A Chain A, 1.B2.D9, A Bispecific AlphaBETA TCR
pdb|2P1Y|C Chain C, 1.B2.D9, A Bispecific AlphaBETA TCR
pdb|2P1Y|E Chain E, 1.B2.D9, A Bispecific AlphaBETA TCR
pdb|2P1Y|G Chain G, 1.B2.D9, A Bispecific AlphaBETA TCR
Length = 238
Score = 27.7 bits (60), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 31/79 (39%), Gaps = 24/79 (30%)
Query: 25 GGTITLECKASGNPVPSIIWSKKDS-------------------SLPSGEK----SLEGF 61
GG +TL C + N ++ W ++D+ +P G K S E F
Sbjct: 15 GGKVTLSCNQTNNH-NNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENF 73
Query: 62 SITLEKVDRHQAGVYQCTA 80
S+ LE Q VY C +
Sbjct: 74 SLILELATPSQTSVYFCAS 92
>pdb|3FN3|A Chain A, Dimeric Structure Of Pd-L1
pdb|3FN3|B Chain B, Dimeric Structure Of Pd-L1
Length = 221
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 30 LECKASGNPVPSIIWSKKDSSLPSGE 55
L C+A G P +IW+ D + SG+
Sbjct: 136 LTCQAEGYPKAEVIWTSSDHQVLSGK 161
>pdb|3BIK|A Chain A, Crystal Structure Of The Pd-1PD-L1 Complex
pdb|3BIS|A Chain A, Crystal Structure Of The Pd-L1
pdb|3BIS|B Chain B, Crystal Structure Of The Pd-L1
Length = 222
Score = 27.3 bits (59), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 30 LECKASGNPVPSIIWSKKDSSLPSGE 55
L C+A G P +IW+ D + SG+
Sbjct: 136 LTCQAEGYPKAEVIWTSSDHQVLSGK 161
>pdb|4DKD|C Chain C, Crystal Structure Of Human Interleukin-34 Bound To Human
Csf-1r
Length = 292
Score = 27.3 bits (59), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 11/87 (12%)
Query: 15 PSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFS--ITLEKVDRHQ 72
PS +L V+ G T+TL C +G S+ W S P +G S ++
Sbjct: 9 PSVPELVVKPGATVTLRCVGNG----SVEWDGPPS--PHWTLYSDGSSSILSTNNATFQN 62
Query: 73 AGVYQCTATNGVGDPVTVDMTLEVLCK 99
G Y+CT GDP+ + + K
Sbjct: 63 TGTYRCTEP---GDPLGGSAAIHLYVK 86
>pdb|1U3H|B Chain B, Crystal Structure Of Mouse Tcr 172.10 Complexed With Mhc
Class Ii I-Au Molecule At 2.4 A
pdb|1U3H|F Chain F, Crystal Structure Of Mouse Tcr 172.10 Complexed With Mhc
Class Ii I-Au Molecule At 2.4 A
Length = 111
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 24/84 (28%)
Query: 25 GGTITLECKASGNPVPSIIWSKKDSS-------------------LPSGEK----SLEGF 61
G +TL C + N ++ W ++D+ +P G K S E F
Sbjct: 14 GEKVTLSCNQTNNH-NNMYWYRQDTGHGLRLIYYSYGAGSTEKGDIPDGYKASRPSQENF 72
Query: 62 SITLEKVDRHQAGVYQCTATNGVG 85
S+TLE Q VY C + + G
Sbjct: 73 SLTLESATPSQTSVYFCASGDAGG 96
>pdb|1D9K|B Chain B, Crystal Structure Of Complex Between D10 Tcr And Pmhc
I-AkCA
pdb|1D9K|F Chain F, Crystal Structure Of Complex Between D10 Tcr And Pmhc
I-AkCA
Length = 112
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 25/84 (29%)
Query: 25 GGTITLECKASGNPVPSIIWSKKDSS-------------------LPSGEK----SLEGF 61
GG +TL C + N ++ W ++D+ +P G K S E F
Sbjct: 14 GGKVTLSCNQTNNH-NNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENF 72
Query: 62 SITLEKVDRHQAGVYQCTATNGVG 85
S+ LE Q VY C A+ G G
Sbjct: 73 SLILELATPSQTSVYFC-ASGGQG 95
>pdb|4HBC|L Chain L, Crystal Structure Of A Conformation-Dependent Rabbit Igg
Fab Specific For Amyloid Prefibrillar Oligomers
Length = 213
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 19/76 (25%)
Query: 25 GGTITLECKASGNPVPSIIWSKKD----------------SSLPS---GEKSLEGFSITL 65
GGT+T++C+AS + + W ++ S +PS G S F++T+
Sbjct: 16 GGTVTIKCQASQSISSYLAWYQQKPGQRPRLLIYETSTLASGVPSRFKGSGSGTDFTLTI 75
Query: 66 EKVDRHQAGVYQCTAT 81
++ A Y C +T
Sbjct: 76 SDLECADAATYYCQST 91
>pdb|1CT8|A Chain A, Catalytic Antibody 7c8 Complex
pdb|1CT8|C Chain C, Catalytic Antibody 7c8 Complex
Length = 214
Score = 27.3 bits (59), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/83 (21%), Positives = 37/83 (44%), Gaps = 19/83 (22%)
Query: 20 LTVRKGGTITLECKASGNPVPSIIWSKKDSS------LPSGEKSLEG------------- 60
L+V G +++L C+AS + + W ++ S + +S+ G
Sbjct: 11 LSVTPGDSVSLSCRASQSVSNKLHWYQQKSHESPRLLIKFASQSIPGIPSRFSGSGSGSD 70
Query: 61 FSITLEKVDRHQAGVYQCTATNG 83
F++++ V+ G+Y C T+G
Sbjct: 71 FTLSINSVETEDFGIYFCHQTHG 93
>pdb|3K1K|C Chain C, Green Fluorescent Protein Bound To Minimizer Nanobody
pdb|3K1K|D Chain D, Green Fluorescent Protein Bound To Minimizer Nanobody
Length = 123
Score = 27.3 bits (59), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 10/49 (20%)
Query: 1 MEQLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVP--SIIWSKK 47
M Q+Q+V +G V+ GG++ L C ASG PV S+ W ++
Sbjct: 1 MAQVQLV--------ESGGALVQPGGSLRLSCAASGFPVNRYSMRWYRQ 41
>pdb|3QPQ|L Chain L, Crystal Structure Of Anti-Tlr3 Antibody C1068 Fab
pdb|3QPQ|E Chain E, Crystal Structure Of Anti-Tlr3 Antibody C1068 Fab
pdb|3QPQ|C Chain C, Crystal Structure Of Anti-Tlr3 Antibody C1068 Fab
pdb|3QPQ|I Chain I, Crystal Structure Of Anti-Tlr3 Antibody C1068 Fab
pdb|3ULU|E Chain E, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|E Chain E, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 215
Score = 27.3 bits (59), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 11 IRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKK 47
I+ + S L+ G T+T+ C+ASGN + W ++
Sbjct: 2 IQMTQSPASLSASVGETVTITCRASGNIHNYLAWYQQ 38
>pdb|3CXD|L Chain L, Crystal Structure Of Anti-Osteopontin Antibody 23c3 In
Complex With Its Epitope Peptide
pdb|3DSF|L Chain L, Crystal Structure Of Anti-Osteopontin Antibody 23c3 In
Complex With W43a Mutated Epitope Peptide
Length = 213
Score = 26.9 bits (58), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 33/87 (37%), Gaps = 19/87 (21%)
Query: 11 IRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDS-------------------SL 51
I+ + S L+V G T+T+ C+AS N + W ++ S
Sbjct: 2 IQMTQSPASLSVSVGETVTITCRASENIYSFLAWYQQKQGKSPQLLVYAATNLADGVPSR 61
Query: 52 PSGEKSLEGFSITLEKVDRHQAGVYQC 78
SG S FS+ + + G Y C
Sbjct: 62 FSGSGSGTQFSLKINSLQSEDFGTYYC 88
>pdb|1UCT|A Chain A, Crystal Structure Of The Extracellular Fragment Of Fc
Alpha Receptor I (Cd89)
Length = 218
Score = 26.9 bits (58), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 20 LTVRKGGTITLECKASGNPVPSIIWSKK-DSSLPSGEKSLEGFSITLEKVDRHQAGVYQC 78
L + G I+L C ++ P +K+ + SLP + + +L VD + +G+Y+C
Sbjct: 115 LVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQHQSGEHPANFSLGPVDLNVSGIYRC 174
>pdb|3IY6|A Chain A, Variable Domains Of The Computer Generated Model (Wam)
Of Fab E Fitted Into The Cryoem Reconstruction Of The
Virus- Fab E Complex
Length = 107
Score = 26.9 bits (58), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/78 (21%), Positives = 32/78 (41%), Gaps = 19/78 (24%)
Query: 20 LTVRKGGTITLECKASGNPVPSIIW----------------SKKDSSLP---SGEKSLEG 60
+++ G +T+ CKAS N ++ W S +++ +P +G S
Sbjct: 9 MSISVGDRVTMNCKASQNVDSNVDWYQQKTGQSPNLLIYKASNRNTGVPDRFTGSGSGTD 68
Query: 61 FSITLEKVDRHQAGVYQC 78
F+ T+ + VY C
Sbjct: 69 FTFTISNMQAEDLAVYYC 86
>pdb|1RHH|A Chain A, Crystal Structure Of The Broadly Hiv-1 Neutralizing Fab X5
At 1.90 Angstrom Resolution
pdb|1RHH|C Chain C, Crystal Structure Of The Broadly Hiv-1 Neutralizing Fab X5
At 1.90 Angstrom Resolution
pdb|2B4C|L Chain L, Crystal Structure Of Hiv-1 Jr-fl Gp120 Core Protein
Containing The Third Variable Region (v3) Complexed With
Cd4 And The X5 Antibody
Length = 215
Score = 26.9 bits (58), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 18/90 (20%)
Query: 15 PSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEKSLE-------------G 60
PS+ QL K GT ++ C + P + + K D++L SG G
Sbjct: 121 PSDEQL---KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSRDSTYSLG 177
Query: 61 FSITLEKVDRHQAGVYQCTATN-GVGDPVT 89
++TL K D + VY C T+ G+ PVT
Sbjct: 178 STLTLSKADYEKHKVYACEVTHQGLSSPVT 207
Score = 25.8 bits (55), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 110 GFSITLEKVDRHQAGVYQCTATN-GVGDPVT 139
G ++TL K D + VY C T+ G+ PVT
Sbjct: 177 GSTLTLSKADYEKHKVYACEVTHQGLSSPVT 207
>pdb|1CIC|C Chain C, Idiotope-Anti-Idiotope Fab-Fab Complex; D1.3-E225
Length = 214
Score = 26.9 bits (58), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 11 IRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKK 47
I+ + S L+ G T+T+ C+ASGN + W ++
Sbjct: 2 IQMTQSPASLSASVGETVTITCRASGNIHNYLAWYQQ 38
>pdb|1U8K|A Chain A, Crystal Structure Of The Hiv-1 Cross Neutralizing
Monoclonal Antibody 2f5 In Complex With Gp41 Peptide
Leldkwasl
Length = 214
Score = 26.6 bits (57), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 20/91 (21%)
Query: 15 PSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEK--------------SLE 59
PS+ QL K GT ++ C + P + + K D++L SG SL
Sbjct: 120 PSDRQL---KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLS 176
Query: 60 GFSITLEKVDRHQAGVYQCTATN-GVGDPVT 89
++TL K D + VY+C T+ G+ PVT
Sbjct: 177 S-TLTLSKADYEKHKVYECEVTHQGLSSPVT 206
Score = 26.2 bits (56), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 112 SITLEKVDRHQAGVYQCTATN-GVGDPVT 139
++TL K D + VY+C T+ G+ PVT
Sbjct: 178 TLTLSKADYEKHKVYECEVTHQGLSSPVT 206
>pdb|2AP2|A Chain A, Single Chain Fv Of C219 In Complex With Synthetic Epitope
Peptide
pdb|2AP2|C Chain C, Single Chain Fv Of C219 In Complex With Synthetic Epitope
Peptide
Length = 115
Score = 26.6 bits (57), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 41/102 (40%), Gaps = 29/102 (28%)
Query: 14 SPSNGQLTVRKGGTITLECKA------SGNPVPSIIW----------------SKKDSSL 51
SPS+ LTV G +T+ CK+ SGN + W S ++S +
Sbjct: 10 SPSS--LTVTAGEKVTMSCKSSQSLLNSGNQKNYLTWYQQKPGQPPKLLIYWASTRESGV 67
Query: 52 P---SGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTV 90
P +G S F++T+ V VY C N P+T
Sbjct: 68 PDRFTGSGSGTDFTLTISSVQAEDLAVYYC--QNDYSYPLTF 107
>pdb|1OVZ|A Chain A, Crystal Structure Of Human Fcari
pdb|1OVZ|B Chain B, Crystal Structure Of Human Fcari
pdb|1OW0|C Chain C, Crystal Structure Of Human Fcari Bound To Iga1-fc
pdb|1OW0|D Chain D, Crystal Structure Of Human Fcari Bound To Iga1-fc
Length = 207
Score = 26.6 bits (57), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 20 LTVRKGGTITLECKASGNPVPSIIWSKK-DSSLPSGEKSLEGFSITLEKVDRHQAGVYQC 78
L + G I+L C ++ P +K+ + SLP + + +L VD + +G+Y+C
Sbjct: 113 LVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQHQSGEHPANFSLGPVDLNVSGIYRC 172
>pdb|1FDL|L Chain L, Crystallographic Refinement Of The Three-Dimensional
Structure Of The Fab D1.3-Lysozyme Complex At 2.5-
Angstroms Resolution
Length = 214
Score = 26.6 bits (57), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 11 IRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKK 47
I+ + S L+ G T+T+ C+ASGN + W ++
Sbjct: 2 IQMTQSPASLSASVGETVTITCRASGNIHNYLAWYQQ 38
>pdb|2QCU|A Chain A, Crystal Structure Of Glycerol-3-Phosphate Dehydrogenase
From Escherichia Coli
pdb|2QCU|B Chain B, Crystal Structure Of Glycerol-3-Phosphate Dehydrogenase
From Escherichia Coli
pdb|2R45|A Chain A, Crystal Structure Of Escherichia Coli Glycerol-3-Phosphate
Dehydrogenase In Complex With 2-Phospho-D-Glyceric Acid
pdb|2R45|B Chain B, Crystal Structure Of Escherichia Coli Glycerol-3-Phosphate
Dehydrogenase In Complex With 2-Phospho-D-Glyceric Acid
pdb|2R46|A Chain A, Crystal Structure Of Escherichia Coli Glycerol-3-Phosphate
Dehydrogenase In Complex With 2-Phosphopyruvic Acid.
pdb|2R46|B Chain B, Crystal Structure Of Escherichia Coli Glycerol-3-Phosphate
Dehydrogenase In Complex With 2-Phosphopyruvic Acid.
pdb|2R4E|A Chain A, Crystal Structure Of Escherichia Coli Glycerol-3-Phosphate
Dehydrogenase In Complex With Dhap
pdb|2R4E|B Chain B, Crystal Structure Of Escherichia Coli Glycerol-3-Phosphate
Dehydrogenase In Complex With Dhap
Length = 501
Score = 26.6 bits (57), Expect = 5.1, Method: Composition-based stats.
Identities = 11/41 (26%), Positives = 22/41 (53%)
Query: 16 SNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK 56
+N Q+ VRKGG + +A+ + +W + + +G+K
Sbjct: 154 ANAQMVVRKGGEVLTRTRATSARRENGLWIVEAEDIDTGKK 194
>pdb|3QPX|L Chain L, Crystal Structure Of Fab C2507
Length = 213
Score = 26.6 bits (57), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 8/83 (9%)
Query: 11 IRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDR 70
I+ + S L+ G +TL CKAS N + W + +K E + + DR
Sbjct: 2 IQMTQSPSLLSASVGDRVTLSCKASQNIYNYLNWYQ--------QKLGEAPKLLIYYTDR 53
Query: 71 HQAGVYQCTATNGVGDPVTVDMT 93
Q G+ + +G G T+ ++
Sbjct: 54 LQTGIPSRFSGDGSGSDYTLTIS 76
Score = 26.2 bits (56), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 20/91 (21%)
Query: 15 PSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEK--------------SLE 59
PS+ QL K GT ++ C + P + + K D++L SG SL
Sbjct: 119 PSDEQL---KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLS 175
Query: 60 GFSITLEKVDRHQAGVYQCTATN-GVGDPVT 89
++TL K D + VY C T+ G+ PVT
Sbjct: 176 S-TLTLSKADYEKHKVYACEVTHQGLSSPVT 205
>pdb|2F5B|L Chain L, Crystal Structure Of Fab' From The Hiv-1 Neutralizing
Antibody 2f5 In Complex With Its Gp41 Epitope
pdb|1U8H|A Chain A, Crystal Structure Of The Hiv-1 Cross Neutralizing
Monoclonal Antibody 2f5 In Complex With Gp41 Peptide
Aldkwas
pdb|1U8I|A Chain A, Crystal Structure Of The Hiv-1 Cross Neutralizing
Monoclonal Antibody 2f5 In Complex With Gp41 Peptide
Eldkwan
pdb|1U8J|A Chain A, Crystal Structure Of The Hiv-1 Cross Neutralizing
Monoclonal Antibody 2f5 In Complex With Gp41 Peptide
Eldkwag
pdb|1U8L|A Chain A, Crystal Structure Of The Hiv-1 Cross Neutralizing
Monoclonal Antibody 2f5 In Complex With Gp41 Peptide
Dldrwas
pdb|1U8M|A Chain A, Crystal Structure Of The Hiv-1 Cross Neutralizing
Monoclonal Antibody 2f5 In Complex With Gp41 Peptide
Eldkyas
pdb|1U8N|A Chain A, Crystal Structure Of The Hiv-1 Cross Neutralizing
Monoclonal Antibody 2f5 In Complex With Gp41 Peptide
Eldkfas
pdb|1U8O|A Chain A, Crystal Structure Of The Hiv-1 Cross Neutralizing
Monoclonal Antibody 2f5 In Complex With Gp41 Peptide
Eldkhas
pdb|1U8P|A Chain A, Crystal Structure Of The Hiv-1 Cross Neutralizing
Monoclonal Antibody 2f5 In Complex With Gp41 Peptide
Ecdkwcs
pdb|1U8Q|A Chain A, Crystal Structure Of The Hiv-1 Cross Neutralizing
Monoclonal Antibody 2f5 In Complex With Gp41 Peptide
Elekwas
pdb|1U91|A Chain A, Crystal Structure Of The Hiv-1 Cross Neutralizing
Monoclonal Antibody 2f5 In Complex With Gp41 Peptide
Analog Endkw- [dap]-S (Cyclic)
pdb|1U92|A Chain A, Crystal Structure Of The Hiv-1 Cross Neutralizing
Monoclonal Antibody 2f5 In Complex With Gp41 Peptide
Analog E-[dap]- Dkwqs (Cyclic)
pdb|1U93|A Chain A, Crystal Structure Of The Hiv-1 Cross Neutralizing
Monoclonal Antibody 2f5 In Complex With Gp41 Peptide
Analog Eqdkw- [dap]-S (Cyclic)
pdb|1U95|A Chain A, Crystal Structure Of The Hiv-1 Cross Neutralizing
Monoclonal Antibody 2f5 In Complex With Gp41 Peptide
Eldhwas
pdb|2P8L|A Chain A, Crystal Structure Of The Hiv-1 Cross Neutralizing
Monoclonal Antibody 2f5 In Complex With Gp41 Peptide
Elleldkwaslwn
pdb|2P8M|A Chain A, Crystal Structure Of The Hiv-1 Cross Neutralizing
Monoclonal Antibody 2f5 In Complex With Gp41 Peptide
Elleldkwaslwn In New Crystal Form
pdb|2P8P|A Chain A, Crystal Structure Of The Hiv-1 Cross Neutralizing
Monoclonal Antibody 2f5 In Complex With Gp41 Peptide
Leldkwaslw[n-Ac]
pdb|2PR4|L Chain L, Crystal Structure Of Fab' From The Hiv-1 Neutralizing
Antibody 2f5
pdb|2PW1|A Chain A, Crystal Structure Of The Hiv-1 Cross Neutralizing
Monoclonal Antibody 2f5 In Complex With Gp41 Peptide
Eldkwnsl
pdb|2PW2|A Chain A, Crystal Structure Of The Hiv-1 Cross Neutralizing
Monoclonal Antibody 2f5 In Complex With Gp41 Peptide
Eldkwksl
pdb|3D0V|A Chain A, Crystal Structure Of The Hiv-1 Cross Neutralizing
Monoclonal Antibody 2f5 In Complex With Gp41 Peptide
Lleldkwaslw
pdb|3DRO|A Chain A, Crystal Structure Of The Hiv-1 Cross Neutralizing Antibody
2f5 In Complex With Gp41 Peptide Elleldkwaslwn Grown In
Ammonium Sulfate
pdb|3DRQ|A Chain A, Crystal Structure Of The Hiv-1 Broadly Neutralizing
Antibody 2f5 In Complex With The Gp41 Fp-Mper Hyb3k
Construct
514gigalflgflgaags528kk-Ahx-655kneqelleldkwaslwn671
Soaked In Peg2- Propanol Solution
pdb|3BQU|A Chain A, Crystal Structure Of The 2f5 Fab'-3h6 Fab Complex
pdb|3DRT|A Chain A, Crystal Structure Of The Hiv-1 Broadly Neutralizing
Antibody 2f5 In Complex With The Gp41 Scrambledfp-Mper
Scrhyb3k Construct
Gigafgllgflaagskk-Ahx-K656neqelleldkwaslwn671
pdb|3EGS|A Chain A, Crystal Structure Of The Hiv-1 Broadly Neutralizing
Antibody 2f5 In Complex With The Gp41 Scrambledfp-Mper
Scrhyb3k Construct
Gigafgllgflaagskk-Ahx-K656neqelleldkwaslwn671 Soaked In
Ammonium Sulfate
pdb|3IDJ|A Chain A, Crystal Structure Of The Hiv-1 Cross Neutralizing
Monoclonal Antibody 2f5 Fab' Fragment In Complex With
Gp41 Peptide Analog Eld(Orn)was
pdb|3IDM|A Chain A, Crystal Structure Of The Hiv-1 Cross Neutralizing
Monoclonal Antibody 2f5 Fab' Fragment In Complex With
Gp41 Peptide Analog Eld(Nrg)was
pdb|3IDN|A Chain A, Crystal Structure Of The Hiv-1 Cross Neutralizing
Monoclonal Antibody 2f5 Fab' Fragment In Complex With
Gp41 Peptide Analog Eld(Paf)was
pdb|3IDG|A Chain A, Crystal Structure Of The Hiv-1 Cross Neutralizing
Monoclonal Antibody 2f5 In Complex With Gp41 Peptide
Aldkwd
pdb|3IDI|A Chain A, Crystal Structure Of The Hiv-1 Cross Neutralizing
Monoclonal Antibody 2f5 Fab' Fragment In Complex With
Gp41 Peptide Aldkwnq
Length = 214
Score = 26.6 bits (57), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 20/91 (21%)
Query: 15 PSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEK--------------SLE 59
PS+ QL K GT ++ C + P + + K D++L SG SL
Sbjct: 120 PSDEQL---KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLS 176
Query: 60 GFSITLEKVDRHQAGVYQCTATN-GVGDPVT 89
++TL K D + VY+C T+ G+ PVT
Sbjct: 177 S-TLTLSKADYEKHKVYECEVTHQGLSSPVT 206
Score = 26.2 bits (56), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 112 SITLEKVDRHQAGVYQCTATN-GVGDPVT 139
++TL K D + VY+C T+ G+ PVT
Sbjct: 178 TLTLSKADYEKHKVYECEVTHQGLSSPVT 206
>pdb|2F5A|L Chain L, Crystal Structure Of Fab' From The Hiv-1 Neutralizing
Antibody 2f5
Length = 213
Score = 26.6 bits (57), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 20/91 (21%)
Query: 15 PSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEK--------------SLE 59
PS+ QL K GT ++ C + P + + K D++L SG SL
Sbjct: 120 PSDEQL---KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLS 176
Query: 60 GFSITLEKVDRHQAGVYQCTATN-GVGDPVT 89
++TL K D + VY+C T+ G+ PVT
Sbjct: 177 S-TLTLSKADYEKHKVYECEVTHQGLSSPVT 206
Score = 26.2 bits (56), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 112 SITLEKVDRHQAGVYQCTATN-GVGDPVT 139
++TL K D + VY+C T+ G+ PVT
Sbjct: 178 TLTLSKADYEKHKVYECEVTHQGLSSPVT 206
>pdb|3D0L|A Chain A, Crystal Structure Of The Hiv-1 Broadly Neutralizing
Antibody 2f5 In Complex With The Gp41 Fp-Mper Hyb3k
Construct
514gigalflgflgaags528kk-Ahx-655kneqelleldkwaslwn671
Length = 214
Score = 26.6 bits (57), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 20/91 (21%)
Query: 15 PSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEK--------------SLE 59
PS+ QL K GT ++ C + P + + K D++L SG SL
Sbjct: 120 PSDEQL---KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLS 176
Query: 60 GFSITLEKVDRHQAGVYQCTATN-GVGDPVT 89
++TL K D + VY+C T+ G+ PVT
Sbjct: 177 S-TLTLSKADYEKHKVYECEVTHQGLSSPVT 206
Score = 26.2 bits (56), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 112 SITLEKVDRHQAGVYQCTATN-GVGDPVT 139
++TL K D + VY+C T+ G+ PVT
Sbjct: 178 TLTLSKADYEKHKVYECEVTHQGLSSPVT 206
>pdb|1AP2|A Chain A, Single Chain Fv Of C219
pdb|1AP2|C Chain C, Single Chain Fv Of C219
Length = 113
Score = 26.6 bits (57), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 41/102 (40%), Gaps = 29/102 (28%)
Query: 14 SPSNGQLTVRKGGTITLECKA------SGNPVPSIIW----------------SKKDSSL 51
SPS+ LTV G +T+ CK+ SGN + W S ++S +
Sbjct: 7 SPSS--LTVTAGEKVTMSCKSSQSLLNSGNQKNYLTWYQQKPGQPPKLLIYWASTRESGV 64
Query: 52 P---SGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTV 90
P +G S F++T+ V VY C N P+T
Sbjct: 65 PDRFTGSGSGTDFTLTISSVQAEDLAVYYC--QNDYSYPLTF 104
>pdb|1ZAN|L Chain L, Crystal Structure Of Anti-Ngf Ad11 Fab
Length = 214
Score = 26.6 bits (57), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 11 IRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKK 47
I+ + S L+ G T+T+EC+AS + ++ W ++
Sbjct: 2 IQMTQSPASLSASLGETVTIECRASEDIYNALAWYQQ 38
>pdb|1MVU|A Chain A, Single Chain Fv Of C219 Heavy Chain V101l Mutant In
Complex With Synthetic Epitope Peptide
Length = 114
Score = 26.6 bits (57), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 41/102 (40%), Gaps = 29/102 (28%)
Query: 14 SPSNGQLTVRKGGTITLECKA------SGNPVPSIIW----------------SKKDSSL 51
SPS+ LTV G +T+ CK+ SGN + W S ++S +
Sbjct: 7 SPSS--LTVTAGEKVTMSCKSSQSLLNSGNQKNYLTWYQQKPGQPPKLLIYWASTRESGV 64
Query: 52 P---SGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTV 90
P +G S F++T+ V VY C N P+T
Sbjct: 65 PDRFTGSGSGTDFTLTISSVQAEDLAVYYC--QNDYSYPLTF 104
>pdb|3PGF|L Chain L, Crystal Structure Of Maltose Bound Mbp With A
Conformationally Specific Synthetic Antigen Binder (Sab)
Length = 215
Score = 26.6 bits (57), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 20/91 (21%)
Query: 15 PSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEK--------------SLE 59
PS+ QL K GT ++ C + P + + K D++L SG SL
Sbjct: 121 PSDSQL---KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLS 177
Query: 60 GFSITLEKVDRHQAGVYQCTATN-GVGDPVT 89
++TL K D + VY C T+ G+ PVT
Sbjct: 178 S-TLTLSKADYEKHKVYACEVTHQGLSSPVT 207
>pdb|1JGL|L Chain L, Crystal Structure Of Immunoglobulin Fab Fragment
Complexed With 17-Beta-Estradiol
pdb|1JHK|L Chain L, Crystal Structure Of The Anti-Estradiol Antibody 57-2
Length = 214
Score = 26.6 bits (57), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 11 IRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKK 47
I+ + S L+ G T+T+ C+ASGN + W ++
Sbjct: 2 IQMTQSPASLSASVGETVTITCRASGNIHNYLAWYQQ 38
>pdb|1UWG|L Chain L, Molecular Mechanism Of Enantioselective Proton Transfer To
Carbon In Catalytic Antibody 14d9
pdb|1UWG|X Chain X, Molecular Mechanism Of Enantioselective Proton Transfer To
Carbon In Catalytic Antibody 14d9
Length = 213
Score = 26.6 bits (57), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 24/93 (25%)
Query: 15 PSNGQLTVRKGGTITLECKASGNPVP---SIIWSKKDSSLPSGEK--------------S 57
PS+ QL K GT ++ C + N P ++ W K D++L SG S
Sbjct: 120 PSDEQL---KSGTASVVCLLN-NFYPREAAVAW-KVDNALQSGNSQESVTEQDSADSTYS 174
Query: 58 LEGFSITLEKVDRHQAGVYQCTATN-GVGDPVT 89
L ++TL K D + VY C T+ G+ PVT
Sbjct: 175 LSS-TLTLSKADYEKHKVYACEVTHQGLSSPVT 206
>pdb|1WEJ|L Chain L, Igg1 Fab Fragment (Of E8 Antibody) Complexed With Horse
Cytochrome C At 1.8 A Resolution
pdb|1QBL|L Chain L, Fab E8 (Fabe8a) X-Ray Structure At 2.26 Angstrom
Resolution
pdb|1QBM|L Chain L, Fab E8b Antibody, X-Ray Structure At 2.37 Angstroms
Resolution
Length = 214
Score = 26.6 bits (57), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 11 IRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKK 47
I+ + S L+ G T+T+ C+ASGN + W ++
Sbjct: 2 IQMTQSPASLSASVGETVTITCRASGNIHNYLAWYQQ 38
>pdb|4GKZ|B Chain B, Ha1.7, A Mhc Class Ii Restricted Tcr Specific For
Haemagglutinin
Length = 241
Score = 26.6 bits (57), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 59/162 (36%), Gaps = 39/162 (24%)
Query: 11 IRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSL------------------- 51
++ + S+ L R G + LEC + ++ W ++D L
Sbjct: 1 VKVTQSSRYLVKRTGEKVFLECVQDMDH-ENMFWYRQDPGLGLRLIYFSYDVKMKEKGDI 59
Query: 52 PSG----EKSLEGFSITLEKVDRHQAGVYQCTA---------TNGVGDPVTVDMTLEVLC 98
P G + E FS+ LE +Q +Y C + T G G +TV +E L
Sbjct: 60 PEGYSVSREKKERFSLILESASTNQTSMYLCASSSTGLPYGYTFGSGTRLTV---VEDLN 116
Query: 99 KILPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTV 140
K+ P + F + ++ Q C AT D V +
Sbjct: 117 KVFPP---EVAVFEPSEAEISHTQKATLVCLATGFFPDHVEL 155
>pdb|3PQY|E Chain E, Crystal Structure Of 6218 Tcr In Complex With The
H2db-Pa224
pdb|3PQY|J Chain J, Crystal Structure Of 6218 Tcr In Complex With The
H2db-Pa224
pdb|3PQY|O Chain O, Crystal Structure Of 6218 Tcr In Complex With The
H2db-Pa224
pdb|3PQY|T Chain T, Crystal Structure Of 6218 Tcr In Complex With The
H2db-Pa224
Length = 240
Score = 26.6 bits (57), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 39/103 (37%), Gaps = 10/103 (9%)
Query: 45 SKKDSSLPSG----EKSLEGFSITLEKVDRHQAGVYQCTATNG---VGDPVTVDMTLEVL 97
S + +P G K E FS+ L+ +Q VY C ++ G P T LE L
Sbjct: 54 SNSEGDIPKGYRVSRKKREHFSLILDSAKTNQTSVYFCASSFGREQYFGPGTRLTVLEDL 113
Query: 98 CKILPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTV 140
+ P + F + ++ Q C AT D V +
Sbjct: 114 KNVFPP---EVAVFEPSEAEISHTQKATLVCLATGFYPDHVEL 153
>pdb|1JNL|L Chain L, Crystal Structure Of Fab-Estradiol Complexes
pdb|1JNN|L Chain L, Crystal Structure Of Fab-Estradiol Complexes
Length = 211
Score = 26.6 bits (57), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 20 LTVRKGGTITLECKASGNPVPSIIWSKK 47
L+ G T+T+ C+ASGN + W ++
Sbjct: 11 LSASVGETVTITCRASGNIYNYLAWYQQ 38
>pdb|3UJT|H Chain H, Structure Of The Fab Fragment Of Ab-52, An Antibody That
Binds The O- Antigen Of Francisella Tularensis
pdb|3UJT|I Chain I, Structure Of The Fab Fragment Of Ab-52, An Antibody That
Binds The O- Antigen Of Francisella Tularensis
Length = 213
Score = 26.6 bits (57), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 18 GQLTVRKGGTITLECKASGNPVPS--IIWSKK 47
G + VR G ++ L CKASG S + W+K+
Sbjct: 8 GSVLVRPGASVKLSCKASGYTFTSSWMHWAKQ 39
>pdb|3UAJ|L Chain L, Crystal Structure Of The Envelope Glycoprotein Ectodomain
From Dengue Virus Serotype 4 In Complex With The Fab
Fragment Of The Chimpanzee Monoclonal Antibody 5h2
pdb|3UAJ|D Chain D, Crystal Structure Of The Envelope Glycoprotein Ectodomain
From Dengue Virus Serotype 4 In Complex With The Fab
Fragment Of The Chimpanzee Monoclonal Antibody 5h2
pdb|3UC0|L Chain L, Crystal Structure Of Domain I Of The Envelope Glycoprotein
Ectodomain From Dengue Virus Serotype 4 In Complex With
The Fab Fragment Of The Chimpanzee Monoclonal Antibody
5h2
pdb|3UC0|M Chain M, Crystal Structure Of Domain I Of The Envelope Glycoprotein
Ectodomain From Dengue Virus Serotype 4 In Complex With
The Fab Fragment Of The Chimpanzee Monoclonal Antibody
5h2
Length = 215
Score = 26.6 bits (57), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 20/91 (21%)
Query: 15 PSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEK--------------SLE 59
PS+ QL K GT ++ C + P + + K D++L SG SL
Sbjct: 121 PSDEQL---KSGTASVACLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDNTYSLS 177
Query: 60 GFSITLEKVDRHQAGVYQCTATN-GVGDPVT 89
++TL K D + VY C T+ G+ PVT
Sbjct: 178 S-TLTLSKADYEKHKVYACEVTHQGLSSPVT 207
>pdb|2PET|A Chain A, Lutheran Glycoprotein, N-Terminal Domains 1 And 2.
pdb|2PF6|A Chain A, Lutheran Glycoprotein, N-Terminal Domains 1 And 2
pdb|2PF6|B Chain B, Lutheran Glycoprotein, N-Terminal Domains 1 And 2
Length = 231
Score = 26.6 bits (57), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 8 PPSIRTSPSNGQLTVRKGGTITLE-CKA-SGNPVPSIIWSKKDSSL 51
P + SP+ G L+V + + C + +GNP P I W + L
Sbjct: 116 PEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRL 161
>pdb|4AY2|A Chain A, Capturing 5' Tri-Phosphorylated Rna Duplex By Rig-I
Length = 687
Score = 26.6 bits (57), Expect = 6.1, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 79 TATNGVGDPVTVDMTLEVLCKILPSGEKSL 108
TA+ GVGD D L+ +CK+ S + S+
Sbjct: 171 TASVGVGDAKNTDEALDYICKLCASLDASV 200
>pdb|3TMI|A Chain A, Structural Basis For Rna Recognition And Activation Of
Rig-I
Length = 695
Score = 26.2 bits (56), Expect = 6.3, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 79 TATNGVGDPVTVDMTLEVLCKILPSGEKSL 108
TA+ GVGD D L+ +CK+ S + S+
Sbjct: 179 TASVGVGDAKNTDEALDYICKLCASLDASV 208
>pdb|1H8N|A Chain A, Three-Dimensional Structure Of Anti-Ampicillin Single
Chain Fv Fragment From Phage-Displayed Murine Antibody
Libraries
Length = 252
Score = 26.2 bits (56), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 11 IRTSPSNGQLTVRKGGTITLECKASGNPVPS--IIWSKK 47
++ S G+L VR G ++ L CKASG S I W K+
Sbjct: 133 VQLQESGGEL-VRPGASVKLSCKASGYTFTSYWINWVKQ 170
>pdb|1ZA6|A Chain A, The Structure Of An Antitumor Ch2-Domain-Deleted
Humanized Antibody
pdb|1ZA6|C Chain C, The Structure Of An Antitumor Ch2-Domain-Deleted
Humanized Antibody
pdb|1ZA6|E Chain E, The Structure Of An Antitumor Ch2-Domain-Deleted
Humanized Antibody
pdb|1ZA6|G Chain G, The Structure Of An Antitumor Ch2-Domain-Deleted
Humanized Antibody
Length = 220
Score = 26.2 bits (56), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 35/93 (37%), Gaps = 25/93 (26%)
Query: 11 IRTSPSNGQLTVRKGGTITLECKA------SGNPVPSIIW----------------SKKD 48
I S S L V G +TL CK+ SGN + W S ++
Sbjct: 2 IVMSQSPDSLAVSLGERVTLNCKSSQSLLYSGNQKNYLAWYQQKPGQSPKLLIYWASARE 61
Query: 49 SSLP---SGEKSLEGFSITLEKVDRHQAGVYQC 78
S +P SG S F++T+ V VY C
Sbjct: 62 SGVPDRFSGSGSGTDFTLTISSVQAEDVAVYYC 94
Score = 25.8 bits (55), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 20/91 (21%)
Query: 15 PSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEK--------------SLE 59
PS+ QL K GT ++ C + P + + K D++L SG SL
Sbjct: 126 PSDEQL---KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLS 182
Query: 60 GFSITLEKVDRHQAGVYQCTATN-GVGDPVT 89
++TL K D + VY C T+ G+ PVT
Sbjct: 183 S-TLTLSKADYEKHKVYACEVTHQGLSSPVT 212
>pdb|2XTJ|C Chain C, The Crystal Structure Of Pcsk9 In Complex With 1d05 Fab
Length = 106
Score = 26.2 bits (56), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 20/91 (21%)
Query: 15 PSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEK--------------SLE 59
PS+ QL K GT ++ C + P + + K D++L SG SL
Sbjct: 12 PSDEQL---KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLS 68
Query: 60 GFSITLEKVDRHQAGVYQCTATN-GVGDPVT 89
++TL K D + VY C T+ G+ PVT
Sbjct: 69 S-TLTLSKADYEKHKVYACEVTHQGLSSPVT 98
>pdb|1RJL|B Chain B, Structure Of The Complex Between Ospb-Ct And
Bactericidal Fab-H6831
Length = 221
Score = 26.2 bits (56), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 18 GQLTVRKGGTITLECKASGNPVPS--IIWSKK 47
G + VR G ++ L CKASG S + W+K+
Sbjct: 8 GSVLVRPGASVKLSCKASGFTFTSSWMHWAKQ 39
>pdb|1LK3|L Chain L, Engineered Human Interleukin-10 Monomer Complexed To 9d7
Fab Fragment
pdb|1LK3|M Chain M, Engineered Human Interleukin-10 Monomer Complexed To 9d7
Fab Fragment
Length = 210
Score = 26.2 bits (56), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 19/78 (24%)
Query: 20 LTVRKGGTITLECKASGNPVPSIIWSKKD----------------SSLP---SGEKSLEG 60
LTV G +T+ CKAS + + W ++ S +P SG S
Sbjct: 10 LTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTD 69
Query: 61 FSITLEKVDRHQAGVYQC 78
F++T++ V+ +Y C
Sbjct: 70 FTLTIDPVEADDTAIYFC 87
>pdb|1AD9|L Chain L, Igg-Fab Fragment Of Engineered Human Monoclonal Antibody
Ctm01
pdb|1AD9|A Chain A, Igg-Fab Fragment Of Engineered Human Monoclonal Antibody
Ctm01
Length = 219
Score = 26.2 bits (56), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 20/91 (21%)
Query: 15 PSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEK--------------SLE 59
PS+ QL K GT ++ C + P + + K D++L SG SL
Sbjct: 125 PSDEQL---KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLS 181
Query: 60 GFSITLEKVDRHQAGVYQCTATN-GVGDPVT 89
++TL K D + VY C T+ G+ PVT
Sbjct: 182 S-TLTLSKADYEKHKVYACEVTHQGLSSPVT 211
>pdb|3SOB|L Chain L, The Structure Of The First Ywtd Beta Propeller Domain Of
Lrp6 In Complex With A Fab
Length = 237
Score = 26.2 bits (56), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 20/91 (21%)
Query: 15 PSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEK--------------SLE 59
PS+ QL K GT ++ C + P + + K D++L SG SL
Sbjct: 143 PSDEQL---KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLS 199
Query: 60 GFSITLEKVDRHQAGVYQCTATN-GVGDPVT 89
++TL K D + VY C T+ G+ PVT
Sbjct: 200 S-TLTLSKADYEKHKVYACEVTHQGLSSPVT 229
>pdb|3PNW|A Chain A, Crystal Structure Of The Tudor Domain Of Human Tdrd3 In
Complex With An Anti-tdrd3 Fab
pdb|3PNW|D Chain D, Crystal Structure Of The Tudor Domain Of Human Tdrd3 In
Complex With An Anti-tdrd3 Fab
pdb|3PNW|G Chain G, Crystal Structure Of The Tudor Domain Of Human Tdrd3 In
Complex With An Anti-tdrd3 Fab
pdb|3PNW|J Chain J, Crystal Structure Of The Tudor Domain Of Human Tdrd3 In
Complex With An Anti-tdrd3 Fab
pdb|3PNW|M Chain M, Crystal Structure Of The Tudor Domain Of Human Tdrd3 In
Complex With An Anti-tdrd3 Fab
pdb|3PNW|P Chain P, Crystal Structure Of The Tudor Domain Of Human Tdrd3 In
Complex With An Anti-tdrd3 Fab
pdb|3PNW|S Chain S, Crystal Structure Of The Tudor Domain Of Human Tdrd3 In
Complex With An Anti-tdrd3 Fab
pdb|3PNW|V Chain V, Crystal Structure Of The Tudor Domain Of Human Tdrd3 In
Complex With An Anti-tdrd3 Fab
Length = 228
Score = 26.2 bits (56), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 20/91 (21%)
Query: 15 PSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEK--------------SLE 59
PS+ QL K GT ++ C + P + + K D++L SG SL
Sbjct: 123 PSDSQL---KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLS 179
Query: 60 GFSITLEKVDRHQAGVYQCTATN-GVGDPVT 89
++TL K D + VY C T+ G+ PVT
Sbjct: 180 S-TLTLSKADYEKHKVYACEVTHQGLSSPVT 209
>pdb|1J8H|E Chain E, Crystal Structure Of A Complex Of A Human AlphaBETA-T Cell
Receptor, Influenza Ha Antigen Peptide, And Mhc Class Ii
Molecule, Hla-Dr4
Length = 246
Score = 26.2 bits (56), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 58/160 (36%), Gaps = 39/160 (24%)
Query: 11 IRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSL------------------- 51
++ + S+ L R G + LEC + ++ W ++D L
Sbjct: 1 VKVTQSSRYLVKRTGEKVFLECVQDMDH-ENMFWYRQDPGLGLRLIYFSYDVKMKEKGDI 59
Query: 52 PSG----EKSLEGFSITLEKVDRHQAGVYQCTA---------TNGVGDPVTVDMTLEVLC 98
P G + E FS+ LE +Q +Y C + T G G +TV +E L
Sbjct: 60 PEGYSVSREKKERFSLILESASTNQTSMYLCASSSTGLPYGYTFGSGTRLTV---VEDLN 116
Query: 99 KILPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPV 138
K+ P + F + ++ Q C AT D V
Sbjct: 117 KVFPP---EVAVFEPSEAEISHTQKATLVCLATGFFPDHV 153
>pdb|1AXS|L Chain L, Mature Oxy-Cope Catalytic Antibody With Hapten
pdb|1AXS|A Chain A, Mature Oxy-Cope Catalytic Antibody With Hapten
Length = 211
Score = 26.2 bits (56), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 20/91 (21%)
Query: 15 PSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEK--------------SLE 59
PS+ QL K GT ++ C + P + + K D++L SG SL
Sbjct: 120 PSDEQL---KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLS 176
Query: 60 GFSITLEKVDRHQAGVYQCTATN-GVGDPVT 89
++TL K D + VY C T+ G+ PVT
Sbjct: 177 S-TLTLSKADYEKHKVYACEVTHQGLSSPVT 206
>pdb|4DN3|L Chain L, Crystal Structure Of Anti-Mcp-1 Antibody Cnto888
pdb|4DN4|L Chain L, Crystal Structure Of The Complex Between Cnto888 Fab And
Mcp-1 Mutant P8a
Length = 216
Score = 26.2 bits (56), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 20/91 (21%)
Query: 15 PSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEK--------------SLE 59
PS+ QL K GT ++ C + P + + K D++L SG SL
Sbjct: 122 PSDEQL---KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLS 178
Query: 60 GFSITLEKVDRHQAGVYQCTATN-GVGDPVT 89
++TL K D + VY C T+ G+ PVT
Sbjct: 179 S-TLTLSKADYEKHKVYACEVTHQGLSSPVT 208
>pdb|3HE7|D Chain D, Crystal Structure Of Mouse Cd1d-Alpha-Galactosylceramide
With Mouse Valpha14-Vbeta7 Nkt Tcr
Length = 242
Score = 26.2 bits (56), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 41/105 (39%), Gaps = 12/105 (11%)
Query: 45 SKKDSSLPSG----EKSLEGFSITLEKVDRHQAGVYQCTATNGVGD-----PVTVDMTLE 95
S + +P G K E FS+ L+ +Q VY C +++ D P T + LE
Sbjct: 54 SNSEGDIPKGYRVSRKKREHFSLILDSAKTNQTSVYFCASSSTGLDTQYFGPGTRLLVLE 113
Query: 96 VLCKILPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTV 140
L + P + F + ++ Q C AT D V +
Sbjct: 114 DLKNVFPP---EVAVFEPSEAEISHTQKATLVCLATGFYPDHVEL 155
>pdb|1D5B|A Chain A, Unliganded Mature Oxy-Cope Catalytic Antibody
pdb|1D5B|L Chain L, Unliganded Mature Oxy-Cope Catalytic Antibody
Length = 211
Score = 26.2 bits (56), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 20/91 (21%)
Query: 15 PSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEK--------------SLE 59
PS+ QL K GT ++ C + P + + K D++L SG SL
Sbjct: 120 PSDEQL---KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLS 176
Query: 60 GFSITLEKVDRHQAGVYQCTATN-GVGDPVT 89
++TL K D + VY C T+ G+ PVT
Sbjct: 177 S-TLTLSKADYEKHKVYACEVTHQGLSSPVT 206
>pdb|1F6L|L Chain L, Variable Light Chain Dimer Of Anti-Ferritin Antibody
Length = 114
Score = 26.2 bits (56), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 36/99 (36%), Gaps = 21/99 (21%)
Query: 11 IRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDS-------------------SL 51
I+ + S L+ G T+T+ C+AS N + W ++ S
Sbjct: 2 IQMTQSPASLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQLLVYNAKTLAEGVPSR 61
Query: 52 PSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTV 90
SG S FS+ + + G Y C + G P T
Sbjct: 62 FSGSGSGTQFSLKINSLQPEDFGSYYC--QHHYGTPFTF 98
>pdb|1RJL|A Chain A, Structure Of The Complex Between Ospb-Ct And
Bactericidal Fab-H6831
Length = 212
Score = 26.2 bits (56), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 34/87 (39%), Gaps = 19/87 (21%)
Query: 11 IRTSPSNGQLTVRKGGTITLECKASGNPVPSIIW-SKKDSSLP----------------- 52
I+ + S L+ G TIT+ C AS N + W +K S+P
Sbjct: 2 IQMNQSPSSLSASLGDTITITCHASQNINVWLNWFQQKPGSIPKLLIYMASNLHTGVPSR 61
Query: 53 -SGEKSLEGFSITLEKVDRHQAGVYQC 78
SG S GF++T+ + Y C
Sbjct: 62 FSGSGSGTGFTLTISSLQPEDIATYYC 88
>pdb|4AEH|L Chain L, Crystal Structure Of The Anti-Aahi Fab9c2 Antibody
Length = 214
Score = 26.2 bits (56), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 11 IRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKK 47
++ + S L+V G T+T+ C+AS N ++ W ++
Sbjct: 2 VQMTQSPASLSVSVGETVTITCRASENIYRNLAWYQQ 38
>pdb|3RPI|L Chain L, Crystal Structure Of Fab From 3bnc60, Highly Potent
Anti-Hiv Antibody
pdb|3RPI|B Chain B, Crystal Structure Of Fab From 3bnc60, Highly Potent
Anti-Hiv Antibody
Length = 206
Score = 26.2 bits (56), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 20/91 (21%)
Query: 15 PSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEK--------------SLE 59
PS+ QL K GT ++ C + P + + K D++L SG SL
Sbjct: 112 PSDEQL---KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLS 168
Query: 60 GFSITLEKVDRHQAGVYQCTATN-GVGDPVT 89
++TL K D + VY C T+ G+ PVT
Sbjct: 169 S-TLTLSKADYEKHKVYACEVTHQGLSSPVT 198
>pdb|1D5I|L Chain L, Unliganded Germline Precursor Of An Oxy-Cope Catalytic
Antibody
pdb|1D6V|L Chain L, Conformation Effects In Biological Catalysis Introduced By
Oxy-Cope Antibody Maturation
Length = 211
Score = 26.2 bits (56), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 20/91 (21%)
Query: 15 PSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEK--------------SLE 59
PS+ QL K GT ++ C + P + + K D++L SG SL
Sbjct: 120 PSDEQL---KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLS 176
Query: 60 GFSITLEKVDRHQAGVYQCTATN-GVGDPVT 89
++TL K D + VY C T+ G+ PVT
Sbjct: 177 S-TLTLSKADYEKHKVYACEVTHQGLSSPVT 206
>pdb|1Z9M|A Chain A, Crystal Structure Of Nectin-Like Molecule-1 Protein Domain
1
pdb|1Z9M|B Chain B, Crystal Structure Of Nectin-Like Molecule-1 Protein Domain
1
Length = 145
Score = 26.2 bits (56), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 31/81 (38%), Gaps = 14/81 (17%)
Query: 13 TSPSNGQLTVRKGGTITLECKASGNPVPSIIWSK-KDSSLPSGEKSL------------- 58
+ P TV GGT+ L+C+ + S+ WS +L GEK
Sbjct: 41 SQPWTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTP 100
Query: 59 EGFSITLEKVDRHQAGVYQCT 79
SI++ V G Y C+
Sbjct: 101 HELSISISNVALADEGEYTCS 121
>pdb|1B4J|L Chain L, Comparison Of The Three-Dimensional Structures Of A
Humanized And A Chimeric Fab Of An Anti-Gamma-Interferon
Antibody
Length = 214
Score = 26.2 bits (56), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 20/91 (21%)
Query: 15 PSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEK--------------SLE 59
PS+ QL K GT ++ C + P + + K D++L SG SL
Sbjct: 120 PSDEQL---KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLS 176
Query: 60 GFSITLEKVDRHQAGVYQCTATN-GVGDPVT 89
++TL K D + VY C T+ G+ PVT
Sbjct: 177 S-TLTLSKADYEKHKVYACEVTHQGLSSPVT 206
>pdb|4G6M|L Chain L, Crystal Strucure Of Human Il-1beta In Complex With
Therapeutic Antibody Binding Fragment Of Gevokizumab
Length = 213
Score = 25.8 bits (55), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 20/91 (21%)
Query: 15 PSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEK--------------SLE 59
PS+ QL K GT ++ C + P + + K D++L SG SL
Sbjct: 120 PSDEQL---KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLS 176
Query: 60 GFSITLEKVDRHQAGVYQCTATN-GVGDPVT 89
++TL K D + VY C T+ G+ PVT
Sbjct: 177 S-TLTLSKADYEKHKVYACEVTHQGLSSPVT 206
>pdb|1G9M|L Chain L, Hiv-1 Hxbc2 Gp120 Envelope Glycoprotein Complexed With Cd4
And Induced Neutralizing Antibody 17b
pdb|1G9N|L Chain L, Hiv-1 Yu2 Gp120 Envelope Glycoprotein Complexed With Cd4
And Induced Neutralizing Antibody 17b
Length = 214
Score = 25.8 bits (55), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 18/90 (20%)
Query: 15 PSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSG--------EKSLEGF---- 61
PS+ QL K GT ++ C + P + + K D++L SG +KS +
Sbjct: 122 PSDEQL---KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQKSKDSTYSLS 178
Query: 62 -SITLEKVDRHQAGVYQCTATN-GVGDPVT 89
++TL K D + VY C T+ G+ PVT
Sbjct: 179 STLTLSKADYEKHKVYACEVTHQGLSSPVT 208
>pdb|3NZH|L Chain L, Crystal Structure Of Anti-Emmprin Antibody 5f6 Fab
Length = 214
Score = 25.8 bits (55), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 20/91 (21%)
Query: 15 PSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEK--------------SLE 59
PS+ QL K GT ++ C + P + + K D++L SG SL
Sbjct: 120 PSDEQL---KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLS 176
Query: 60 GFSITLEKVDRHQAGVYQCTATN-GVGDPVT 89
++TL K D + VY C T+ G+ PVT
Sbjct: 177 S-TLTLSKADYEKHKVYACEVTHQGLSSPVT 206
>pdb|2HH0|L Chain L, Structure Of An Anti-Prp Fab, P-Clone, In Complex With Its
Cognate Bovine Peptide Epitope
Length = 210
Score = 25.8 bits (55), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 20/91 (21%)
Query: 15 PSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEK--------------SLE 59
PS+ QL K GT ++ C + P + + K D++L SG SL
Sbjct: 119 PSDEQL---KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLS 175
Query: 60 GFSITLEKVDRHQAGVYQCTATN-GVGDPVT 89
++TL K D + VY C T+ G+ PVT
Sbjct: 176 S-TLTLSKADYEKHKVYACEVTHQGLSSPVT 205
>pdb|2AJ3|A Chain A, Crystal Structure Of A Cross-Reactive Hiv-1 Neutralizing
Cd4-Binding Site Antibody Fab M18
pdb|2AJ3|C Chain C, Crystal Structure Of A Cross-Reactive Hiv-1 Neutralizing
Cd4-Binding Site Antibody Fab M18
pdb|2AJ3|E Chain E, Crystal Structure Of A Cross-Reactive Hiv-1 Neutralizing
Cd4-Binding Site Antibody Fab M18
Length = 213
Score = 25.8 bits (55), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 20/91 (21%)
Query: 15 PSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEK--------------SLE 59
PS+ QL K GT ++ C + P + + K D++L SG SL
Sbjct: 119 PSDEQL---KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDNKDSTYSLS 175
Query: 60 GFSITLEKVDRHQAGVYQCTATN-GVGDPVT 89
++TL K D + VY C T+ G+ PVT
Sbjct: 176 S-TLTLSKADYEKHKVYACEVTHQGLSSPVT 205
>pdb|4G6K|L Chain L, Crystal Structure Of The Therapeutic Antibody Binding
Fragment Of Gevokizumab In Its Unbound State
Length = 212
Score = 25.8 bits (55), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 20/91 (21%)
Query: 15 PSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEK--------------SLE 59
PS+ QL K GT ++ C + P + + K D++L SG SL
Sbjct: 120 PSDEQL---KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLS 176
Query: 60 GFSITLEKVDRHQAGVYQCTATN-GVGDPVT 89
++TL K D + VY C T+ G+ PVT
Sbjct: 177 S-TLTLSKADYEKHKVYACEVTHQGLSSPVT 206
>pdb|3DVN|A Chain A, Crystal Structure Of K63-specific Fab Apu2.16 Bound To
K63-linked Di- Ubiquitin
pdb|3DVN|L Chain L, Crystal Structure Of K63-specific Fab Apu2.16 Bound To
K63-linked Di- Ubiquitin
Length = 217
Score = 25.8 bits (55), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 20/91 (21%)
Query: 15 PSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEK--------------SLE 59
PS+ QL K GT ++ C + P + + K D++L SG SL
Sbjct: 123 PSDEQL---KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLS 179
Query: 60 GFSITLEKVDRHQAGVYQCTATN-GVGDPVT 89
++TL K D + VY C T+ G+ PVT
Sbjct: 180 S-TLTLSKADYEKHKVYACEVTHQGLSSPVT 209
>pdb|3IU4|L Chain L, Anti Neugcgm3 Ganglioside Chimeric Antibody Chp3
Length = 213
Score = 25.8 bits (55), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 20/91 (21%)
Query: 15 PSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEK--------------SLE 59
PS+ QL K GT ++ C + P + + K D++L SG SL
Sbjct: 120 PSDEQL---KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLS 176
Query: 60 GFSITLEKVDRHQAGVYQCTATN-GVGDPVT 89
++TL K D + VY C T+ G+ PVT
Sbjct: 177 S-TLTLSKADYEKHKVYACEVTHQGLSSPVT 206
>pdb|3DVG|A Chain A, Crystal Structure Of K63-Specific Fab Apu.3a8 Bound To
K63-Linked Di- Ubiquitin
Length = 217
Score = 25.8 bits (55), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 20/91 (21%)
Query: 15 PSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEK--------------SLE 59
PS+ QL K GT ++ C + P + + K D++L SG SL
Sbjct: 123 PSDEQL---KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLS 179
Query: 60 GFSITLEKVDRHQAGVYQCTATN-GVGDPVT 89
++TL K D + VY C T+ G+ PVT
Sbjct: 180 S-TLTLSKADYEKHKVYACEVTHQGLSSPVT 209
>pdb|3O2D|L Chain L, Crystal Structure Of Hiv-1 Primary Receptor Cd4 In Complex
With A Potent Antiviral Antibody
Length = 219
Score = 25.8 bits (55), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 20/91 (21%)
Query: 15 PSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEK--------------SLE 59
PS+ QL K GT ++ C + P + + K D++L SG SL
Sbjct: 125 PSDEQL---KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLS 181
Query: 60 GFSITLEKVDRHQAGVYQCTATN-GVGDPVT 89
++TL K D + VY C T+ G+ PVT
Sbjct: 182 S-TLTLSKADYEKHKVYACEVTHQGLSSPVT 211
>pdb|3FZU|L Chain L, Igg1 Fab Characterized By HD EXCHANGE
pdb|3FZU|D Chain D, Igg1 Fab Characterized By HD EXCHANGE
Length = 214
Score = 25.8 bits (55), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 20/91 (21%)
Query: 15 PSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEK--------------SLE 59
PS+ QL K GT ++ C + P + + K D++L SG SL
Sbjct: 120 PSDEQL---KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLS 176
Query: 60 GFSITLEKVDRHQAGVYQCTATN-GVGDPVT 89
++TL K D + VY C T+ G+ PVT
Sbjct: 177 S-TLTLSKADYEKHKVYACEVTHQGLSSPVT 206
>pdb|3G6J|E Chain E, C3b In Complex With A C3b Specific Fab
pdb|3G6J|G Chain G, C3b In Complex With A C3b Specific Fab
Length = 214
Score = 25.8 bits (55), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 20/91 (21%)
Query: 15 PSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEK--------------SLE 59
PS+ QL K GT ++ C + P + + K D++L SG SL
Sbjct: 120 PSDEQL---KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLS 176
Query: 60 GFSITLEKVDRHQAGVYQCTATN-GVGDPVT 89
++TL K D + VY C T+ G+ PVT
Sbjct: 177 S-TLTLSKADYEKHKVYACEVTHQGLSSPVT 206
>pdb|3SE9|L Chain L, Crystal Structure Of Broadly And Potently Neutralizing
Antibody Vrc- Pg04 In Complex With Hiv-1 Gp120
pdb|4I3R|L Chain L, Crystal Structure Of The Outer Domain Of Hiv-1 Gp120 In
Complex With Vrc-pg04 Space Group P3221
pdb|4I3S|L Chain L, Crystal Structure Of The Outer Domain Of Hiv-1 Gp120 In
Complex With Vrc-pg04 Space Group P21
Length = 208
Score = 25.8 bits (55), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 20/91 (21%)
Query: 15 PSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEK--------------SLE 59
PS+ QL K GT ++ C + P + + K D++L SG SL
Sbjct: 114 PSDEQL---KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLS 170
Query: 60 GFSITLEKVDRHQAGVYQCTATN-GVGDPVT 89
++TL K D + VY C T+ G+ PVT
Sbjct: 171 S-TLTLSKADYEKHKVYACEVTHQGLSSPVT 200
>pdb|1BZ7|A Chain A, Fab Fragment From Murine Ascites
Length = 206
Score = 25.8 bits (55), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 20/91 (21%)
Query: 15 PSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEK--------------SLE 59
PS+ QL K GT ++ C + P + + K D++L SG SL
Sbjct: 120 PSDEQL---KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLS 176
Query: 60 GFSITLEKVDRHQAGVYQCTATN-GVGDPVT 89
++TL K D + VY C T+ G+ PVT
Sbjct: 177 S-TLTLSKADYEKHKVYACEVTHQGLSSPVT 206
>pdb|1N8Z|A Chain A, Crystal Structure Of Extracellular Domain Of Human Her2
Complexed With Herceptin Fab
Length = 214
Score = 25.8 bits (55), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 20/91 (21%)
Query: 15 PSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEK--------------SLE 59
PS+ QL K GT ++ C + P + + K D++L SG SL
Sbjct: 120 PSDEQL---KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLS 176
Query: 60 GFSITLEKVDRHQAGVYQCTATN-GVGDPVT 89
++TL K D + VY C T+ G+ PVT
Sbjct: 177 S-TLTLSKADYEKHKVYACEVTHQGLSSPVT 206
>pdb|1G7J|A Chain A, Crystal Structure Of Hen Egg White Lysozyme (Hel)
Complexed With The Mutant Anti-Hel Monoclonal Antibody
D1.3 (Vlw92h)
Length = 107
Score = 25.8 bits (55), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 20 LTVRKGGTITLECKASGNPVPSIIWSKK 47
L+ G T+T+ C+ASGN + W ++
Sbjct: 11 LSASVGETVTITCRASGNIHNYLAWYQQ 38
>pdb|3OGO|E Chain E, Structure Of The Gfp:gfp-Nanobody Complex At 2.8 A
Resolution In Spacegroup P21212
pdb|3OGO|F Chain F, Structure Of The Gfp:gfp-Nanobody Complex At 2.8 A
Resolution In Spacegroup P21212
pdb|3OGO|G Chain G, Structure Of The Gfp:gfp-Nanobody Complex At 2.8 A
Resolution In Spacegroup P21212
pdb|3OGO|H Chain H, Structure Of The Gfp:gfp-Nanobody Complex At 2.8 A
Resolution In Spacegroup P21212
Length = 123
Score = 25.8 bits (55), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 17 NGQLTVRKGGTITLECKASGNPVP--SIIWSKK 47
+G V+ GG++ L C ASG PV S+ W ++
Sbjct: 8 SGGALVQPGGSLRLSCAASGFPVNRYSMRWYRQ 40
>pdb|4DGV|L Chain L, Structure Of The Hepatitis C Virus Envelope Glycoprotein
E2 Antigenic Region 412-423 Bound To The Broadly
Neutralizing Antibody Hcv1, P2(1) Form
pdb|4DGY|L Chain L, Structure Of The Hepatitis C Virus Envelope Glycoprotein
E2 Antigenic Region 412-423 Bound To The Broadly
Neutralizing Antibody Hcv1, C2 Form
Length = 213
Score = 25.8 bits (55), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 20/91 (21%)
Query: 15 PSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEK--------------SLE 59
PS+ QL K GT ++ C + P + + K D++L SG SL
Sbjct: 119 PSDEQL---KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLS 175
Query: 60 GFSITLEKVDRHQAGVYQCTATN-GVGDPVT 89
++TL K D + VY C T+ G+ PVT
Sbjct: 176 N-TLTLSKADYEKHKVYACEVTHQGLSSPVT 205
>pdb|2O5X|L Chain L, Crystal Structure Of 1e9 Leuh47trpARGH100TRP, AN
ENGINEERED DIELS- Alderase Fab With Nm Steroid-Binding
Affinity
pdb|2O5Y|L Chain L, Crystal Structure Of The 1e9 Leuh47trpARGH100TRP FAB
PROGESTERONE Complex
pdb|2O5Z|L Chain L, Crystal Structure Of The 1e9 Leuh47trpARGH100TRP FAB
5-Beta- Androstane-3,17-Dione Complex
Length = 219
Score = 25.8 bits (55), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 20/91 (21%)
Query: 15 PSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEK--------------SLE 59
PS+ QL K GT ++ C + P + + K D++L SG SL
Sbjct: 125 PSDEQL---KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLS 181
Query: 60 GFSITLEKVDRHQAGVYQCTATN-GVGDPVT 89
++TL K D + VY C T+ G+ PVT
Sbjct: 182 S-TLTLSKADYEKHKVYACEVTHQGLSSPVT 211
>pdb|3R1G|L Chain L, Structure Basis Of Allosteric Inhibition Of Bace1 By An
Exosite- Binding Antibody
Length = 214
Score = 25.8 bits (55), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 20/91 (21%)
Query: 15 PSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEK--------------SLE 59
PS+ QL K GT ++ C + P + + K D++L SG SL
Sbjct: 120 PSDEQL---KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLS 176
Query: 60 GFSITLEKVDRHQAGVYQCTATN-GVGDPVT 89
++TL K D + VY C T+ G+ PVT
Sbjct: 177 S-TLTLSKADYEKHKVYACEVTHQGLSSPVT 206
>pdb|2VXV|L Chain L, Crystal Structure Of Human Igg Abt-325 Fab Fragment
Length = 214
Score = 25.8 bits (55), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 20/91 (21%)
Query: 15 PSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEK--------------SLE 59
PS+ QL K GT ++ C + P + + K D++L SG SL
Sbjct: 121 PSDEQL---KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLS 177
Query: 60 GFSITLEKVDRHQAGVYQCTATN-GVGDPVT 89
++TL K D + VY C T+ G+ PVT
Sbjct: 178 S-TLTLSKADYEKHKVYACEVTHQGLSSPVT 207
>pdb|1PKQ|A Chain A, Myelin Oligodendrocyte Glycoprotein-(8-18c5) Fab-Complex
pdb|1PKQ|F Chain F, Myelin Oligodendrocyte Glycoprotein-(8-18c5) Fab-Complex
Length = 241
Score = 25.8 bits (55), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 20/91 (21%)
Query: 15 PSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEK--------------SLE 59
PS+ QL K GT ++ C + P + + K D++L SG SL
Sbjct: 147 PSDEQL---KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLS 203
Query: 60 GFSITLEKVDRHQAGVYQCTATN-GVGDPVT 89
++TL K D + VY C T+ G+ PVT
Sbjct: 204 S-TLTLSKADYEKHKVYACEVTHQGLSSPVT 233
>pdb|3FCT|A Chain A, Mature Metal Chelatase Catalytic Antibody With Hapten
pdb|3FCT|C Chain C, Mature Metal Chelatase Catalytic Antibody With Hapten
pdb|1NGW|L Chain L, Chimeric Affinity Matured Fab 7g12 Complexed With
Mesoporphyrin
pdb|1NGW|A Chain A, Chimeric Affinity Matured Fab 7g12 Complexed With
Mesoporphyrin
Length = 213
Score = 25.8 bits (55), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 20/91 (21%)
Query: 15 PSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEK--------------SLE 59
PS+ QL K GT ++ C + P + + K D++L SG SL
Sbjct: 120 PSDEQL---KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLS 176
Query: 60 GFSITLEKVDRHQAGVYQCTATN-GVGDPVT 89
++TL K D + VY C T+ G+ PVT
Sbjct: 177 S-TLTLSKADYEKHKVYACEVTHQGLSSPVT 206
>pdb|1FVD|A Chain A, X-Ray Structures Of The Antigen-Binding Domains From Three
Variants Of Humanized Anti-P185-Her2 Antibody 4d5 And
Comparison With Molecular Modeling
pdb|1FVD|C Chain C, X-Ray Structures Of The Antigen-Binding Domains From Three
Variants Of Humanized Anti-P185-Her2 Antibody 4d5 And
Comparison With Molecular Modeling
pdb|1FVE|A Chain A, X-Ray Structures Of The Antigen-Binding Domains From Three
Variants Of Humanized Anti-P185-Her2 Antibody 4d5 And
Comparison With Molecular Modeling
pdb|1FVE|C Chain C, X-Ray Structures Of The Antigen-Binding Domains From Three
Variants Of Humanized Anti-P185-Her2 Antibody 4d5 And
Comparison With Molecular Modeling
Length = 214
Score = 25.8 bits (55), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 20/91 (21%)
Query: 15 PSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEK--------------SLE 59
PS+ QL K GT ++ C + P + + K D++L SG SL
Sbjct: 120 PSDEQL---KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLS 176
Query: 60 GFSITLEKVDRHQAGVYQCTATN-GVGDPVT 89
++TL K D + VY C T+ G+ PVT
Sbjct: 177 S-TLTLSKADYEKHKVYACEVTHQGLSSPVT 206
>pdb|3U0T|C Chain C, Fab-Antibody Complex
pdb|3U0T|A Chain A, Fab-Antibody Complex
Length = 219
Score = 25.8 bits (55), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 20/91 (21%)
Query: 15 PSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEK--------------SLE 59
PS+ QL K GT ++ C + P + + K D++L SG SL
Sbjct: 125 PSDEQL---KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLS 181
Query: 60 GFSITLEKVDRHQAGVYQCTATN-GVGDPVT 89
++TL K D + VY C T+ G+ PVT
Sbjct: 182 S-TLTLSKADYEKHKVYACEVTHQGLSSPVT 211
>pdb|1G7I|A Chain A, Crystal Structure Of Hen Egg White Lysozyme (Hel)
Complexed With The Mutant Anti-Hel Monoclonal Antibody
D1.3 (Vlw92f)
Length = 107
Score = 25.8 bits (55), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 20 LTVRKGGTITLECKASGNPVPSIIWSKK 47
L+ G T+T+ C+ASGN + W ++
Sbjct: 11 LSASVGETVTITCRASGNIHNYLAWYQQ 38
>pdb|1NGX|A Chain A, Chimeric Germline Fab 7g12 With Jeffamine Fragment Bound
pdb|1NGX|L Chain L, Chimeric Germline Fab 7g12 With Jeffamine Fragment Bound
Length = 213
Score = 25.8 bits (55), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 20/91 (21%)
Query: 15 PSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEK--------------SLE 59
PS+ QL K GT ++ C + P + + K D++L SG SL
Sbjct: 120 PSDEQL---KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLS 176
Query: 60 GFSITLEKVDRHQAGVYQCTATN-GVGDPVT 89
++TL K D + VY C T+ G+ PVT
Sbjct: 177 S-TLTLSKADYEKHKVYACEVTHQGLSSPVT 206
>pdb|1G7M|A Chain A, Crystal Structure Of Hen Egg White Lysozyme (Hel)
Complexed With The Mutant Anti-Hel Monoclonal Antibody
D1.3 (Vlw92v)
Length = 107
Score = 25.8 bits (55), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 20 LTVRKGGTITLECKASGNPVPSIIWSKK 47
L+ G T+T+ C+ASGN + W ++
Sbjct: 11 LSASVGETVTITCRASGNIHNYLAWYQQ 38
>pdb|1G7H|A Chain A, Crystal Structure Of Hen Egg White Lysozyme (Hel)
Complexed With The Mutant Anti-Hel Monoclonal Antibody
D1.3(Vlw92a)
Length = 107
Score = 25.8 bits (55), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 20 LTVRKGGTITLECKASGNPVPSIIWSKK 47
L+ G T+T+ C+ASGN + W ++
Sbjct: 11 LSASVGETVTITCRASGNIHNYLAWYQQ 38
>pdb|3QOT|L Chain L, Crystal Structure Of Human Germline Antibody 1-69B3
Length = 221
Score = 25.8 bits (55), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 20/91 (21%)
Query: 15 PSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEK--------------SLE 59
PS+ QL K GT ++ C + P + + K D++L SG SL
Sbjct: 127 PSDEQL---KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLS 183
Query: 60 GFSITLEKVDRHQAGVYQCTATN-GVGDPVT 89
++TL K D + VY C T+ G+ PVT
Sbjct: 184 S-TLTLSKADYEKHKVYACEVTHQGLSSPVT 213
>pdb|3AAZ|B Chain B, Crystal Structure Of The Humanized Recombinant Fab
Fragment Of A Murine; Antibody
pdb|3AAZ|L Chain L, Crystal Structure Of The Humanized Recombinant Fab
Fragment Of A Murine; Antibody
Length = 229
Score = 25.8 bits (55), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 20/91 (21%)
Query: 15 PSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEK--------------SLE 59
PS+ QL K GT ++ C + P + + K D++L SG SL
Sbjct: 125 PSDEQL---KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLS 181
Query: 60 GFSITLEKVDRHQAGVYQCTATN-GVGDPVT 89
++TL K D + VY C T+ G+ PVT
Sbjct: 182 S-TLTLSKADYEKHKVYACEVTHQGLSSPVT 211
>pdb|2QR0|A Chain A, Structure Of Vegf Complexed To A Fab Containing Tyr And
Ser In The Cdrs
pdb|2QR0|E Chain E, Structure Of Vegf Complexed To A Fab Containing Tyr And
Ser In The Cdrs
pdb|2QR0|G Chain G, Structure Of Vegf Complexed To A Fab Containing Tyr And
Ser In The Cdrs
pdb|2QR0|K Chain K, Structure Of Vegf Complexed To A Fab Containing Tyr And
Ser In The Cdrs
pdb|2QR0|M Chain M, Structure Of Vegf Complexed To A Fab Containing Tyr And
Ser In The Cdrs
pdb|2QR0|Q Chain Q, Structure Of Vegf Complexed To A Fab Containing Tyr And
Ser In The Cdrs
pdb|2QR0|S Chain S, Structure Of Vegf Complexed To A Fab Containing Tyr And
Ser In The Cdrs
pdb|2QR0|W Chain W, Structure Of Vegf Complexed To A Fab Containing Tyr And
Ser In The Cdrs
Length = 213
Score = 25.8 bits (55), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 20/91 (21%)
Query: 15 PSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEK--------------SLE 59
PS+ QL K GT ++ C + P + + K D++L SG SL
Sbjct: 122 PSDEQL---KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLS 178
Query: 60 GFSITLEKVDRHQAGVYQCTATN-GVGDPVT 89
++TL K D + VY C T+ G+ PVT
Sbjct: 179 S-TLTLSKADYEKHKVYACEVTHQGLSSPVT 208
>pdb|1N7M|H Chain H, Germline 7g12 With N-Methylmesoporphyrin
pdb|1NGZ|A Chain A, Chimeric Germline Fab 7g12-Apo
Length = 213
Score = 25.8 bits (55), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 20/91 (21%)
Query: 15 PSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEK--------------SLE 59
PS+ QL K GT ++ C + P + + K D++L SG SL
Sbjct: 120 PSDEQL---KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLS 176
Query: 60 GFSITLEKVDRHQAGVYQCTATN-GVGDPVT 89
++TL K D + VY C T+ G+ PVT
Sbjct: 177 S-TLTLSKADYEKHKVYACEVTHQGLSSPVT 206
>pdb|3PJS|A Chain A, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
pdb|3PJS|C Chain C, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
Length = 215
Score = 25.8 bits (55), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 20/91 (21%)
Query: 15 PSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEK--------------SLE 59
PS+ QL K GT ++ C + P + + K D++L SG SL
Sbjct: 122 PSDEQL---KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLS 178
Query: 60 GFSITLEKVDRHQAGVYQCTATN-GVGDPVT 89
++TL K D + VY C T+ G+ PVT
Sbjct: 179 S-TLTLSKADYEKHKVYACEVTHQGLSSPVT 208
>pdb|3NFP|B Chain B, Crystal Structure Of The Fab Fragment Of Therapeutic
Antibody Daclizumab In Complex With Il-2ra (Cd25)
Ectodomain
pdb|3NFP|L Chain L, Crystal Structure Of The Fab Fragment Of Therapeutic
Antibody Daclizumab In Complex With Il-2ra (Cd25)
Ectodomain
pdb|3NFS|L Chain L, Crystal Structure The Fab Fragment Of Therapeutic Antibody
Daclizumab
Length = 212
Score = 25.8 bits (55), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 20/91 (21%)
Query: 15 PSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEK--------------SLE 59
PS+ QL K GT ++ C + P + + K D++L SG SL
Sbjct: 119 PSDEQL---KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLS 175
Query: 60 GFSITLEKVDRHQAGVYQCTATN-GVGDPVT 89
++TL K D + VY C T+ G+ PVT
Sbjct: 176 S-TLTLSKADYEKHKVYACEVTHQGLSSPVT 205
>pdb|1G7L|A Chain A, Crystal Structure Of Hen Egg White Lysozyme (Hel)
Complexed With The Mutant Anti-Hel Monoclonal Antibody
D1.3 (Vlw92s)
Length = 107
Score = 25.8 bits (55), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 20 LTVRKGGTITLECKASGNPVPSIIWSKK 47
L+ G T+T+ C+ASGN + W ++
Sbjct: 11 LSASVGETVTITCRASGNIHNYLAWYQQ 38
>pdb|1FRG|L Chain L, Crystal Structure, Sequence, And Epitope Mapping Of A
Peptide Complex Of An Anti-Influenza Ha Peptide Antibody
Fab 26(Slash)9: Fine-Tuning Antibody Specificity
Length = 217
Score = 25.8 bits (55), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 42/102 (41%), Gaps = 29/102 (28%)
Query: 14 SPSNGQLTVRKGGTITLECKAS--------------------GNPVPSIIW--SKKDSSL 51
SPS+ LTV G +T+ CK+S G P +I+ S ++S +
Sbjct: 7 SPSS--LTVTAGEKVTMSCKSSQSLFNSGKRKNFLTWYHQKPGQPPKLLIYWASTRESGV 64
Query: 52 P---SGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTV 90
P SG S F++T+ V +Y C N P+T
Sbjct: 65 PDRFSGSGSGTDFTLTITSVQAEDLAIYYC--QNDYSHPLTF 104
>pdb|3O2V|L Chain L, Crystal Structure Of 1e9 Phel89serLEUH47TRPMETH100BPHE, AN
Engineered Diels-Alderase Fab With Modified Specificity
And Catalytic Activity
pdb|3O2W|L Chain L, Crystal Structure Of The 1e9 Phel89serLEUH47TRPMETH100BPHE
FAB IN Complex With A 39a11 Transition State Analog
Length = 219
Score = 25.8 bits (55), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 20/91 (21%)
Query: 15 PSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEK--------------SLE 59
PS+ QL K GT ++ C + P + + K D++L SG SL
Sbjct: 125 PSDEQL---KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLS 181
Query: 60 GFSITLEKVDRHQAGVYQCTATN-GVGDPVT 89
++TL K D + VY C T+ G+ PVT
Sbjct: 182 S-TLTLSKADYEKHKVYACEVTHQGLSSPVT 211
>pdb|3MXV|L Chain L, Crystal Structure Of Fab Fragment Of Anti-shh 5e1 Chimera
pdb|3MXW|L Chain L, Crystal Structure Sonic Hedgehog Bound To The 5e1 Fab
Fragment
Length = 214
Score = 25.8 bits (55), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 20/91 (21%)
Query: 15 PSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEK--------------SLE 59
PS+ QL K GT ++ C + P + + K D++L SG SL
Sbjct: 120 PSDEQL---KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLS 176
Query: 60 GFSITLEKVDRHQAGVYQCTATN-GVGDPVT 89
++TL K D + VY C T+ G+ PVT
Sbjct: 177 S-TLTLSKADYEKHKVYACEVTHQGLSSPVT 206
>pdb|1CLY|L Chain L, Igg Fab (Human Igg1, Kappa) Chimeric Fragment (Cbr96)
Complexed With Lewis Y Nonoate Methyl Ester
pdb|1UCB|L Chain L, Structure Of Uncomplexed Fab Compared To Complex (1cly,
1clz)
Length = 219
Score = 25.8 bits (55), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 20/91 (21%)
Query: 15 PSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEK--------------SLE 59
PS+ QL K GT ++ C + P + + K D++L SG SL
Sbjct: 125 PSDEQL---KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLS 181
Query: 60 GFSITLEKVDRHQAGVYQCTATN-GVGDPVT 89
++TL K D + VY C T+ G+ PVT
Sbjct: 182 S-TLTLSKADYEKHKVYACEVTHQGLSSPVT 211
>pdb|1CE1|L Chain L, 1.9a Structure Of The Therapeutic Antibody Campath-1h Fab
In Complex With A Synthetic Peptide Antigen
Length = 211
Score = 25.8 bits (55), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 20/91 (21%)
Query: 15 PSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEK--------------SLE 59
PS+ QL K GT ++ C + P + + K D++L SG SL
Sbjct: 120 PSDEQL---KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLS 176
Query: 60 GFSITLEKVDRHQAGVYQCTATN-GVGDPVT 89
++TL K D + VY C T+ G+ PVT
Sbjct: 177 S-TLTLSKADYEKHKVYACEVTHQGLSSPVT 206
>pdb|1C5B|L Chain L, Decarboxylase Catalytic Antibody 21d8 Unliganded Form
pdb|1C5C|L Chain L, Decarboxylase Catalytic Antibody 21d8-Hapten Complex
Length = 214
Score = 25.8 bits (55), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 20/91 (21%)
Query: 15 PSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEK--------------SLE 59
PS+ QL K GT ++ C + P + + K D++L SG SL
Sbjct: 120 PSDEQL---KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLS 176
Query: 60 GFSITLEKVDRHQAGVYQCTATN-GVGDPVT 89
++TL K D + VY C T+ G+ PVT
Sbjct: 177 S-TLTLSKADYEKHKVYACEVTHQGLSSPVT 206
>pdb|1UYW|L Chain L, Crystal Structure Of The Antiflavivirus Fab4g2
pdb|1UYW|N Chain N, Crystal Structure Of The Antiflavivirus Fab4g2
Length = 212
Score = 25.8 bits (55), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 21/84 (25%)
Query: 14 SPSNGQLTVRKGGTITLECKASGNPVPSIIW----------------SKKDSSLP---SG 54
SP + ++V G +TL CKAS N V + W S + + +P +G
Sbjct: 7 SPKSMSMSV--GERVTLTCKASENVVTYVSWYQQKPEQSPKLLIYGASNRYTGVPDRFTG 64
Query: 55 EKSLEGFSITLEKVDRHQAGVYQC 78
S F++T+ V Y C
Sbjct: 65 SGSATDFTLTISSVQAEDLADYHC 88
>pdb|4DKE|L Chain L, Crystal Structure Of Human Interleukin-34 Bound To Fab1.1
pdb|4DKE|M Chain M, Crystal Structure Of Human Interleukin-34 Bound To Fab1.1
Length = 214
Score = 25.8 bits (55), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 20/91 (21%)
Query: 15 PSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEK--------------SLE 59
PS+ QL K GT ++ C + P + + K D++L SG SL
Sbjct: 120 PSDEQL---KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLS 176
Query: 60 GFSITLEKVDRHQAGVYQCTATN-GVGDPVT 89
++TL K D + VY C T+ G+ PVT
Sbjct: 177 S-TLTLSKADYEKHKVYACEVTHQGLSSPVT 206
>pdb|3MCL|L Chain L, Anti-Beta-Amyloid Antibody C706 Fab In Space Group P21
Length = 212
Score = 25.8 bits (55), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 20/91 (21%)
Query: 15 PSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEK--------------SLE 59
PS+ QL K GT ++ C + P + + K D++L SG SL
Sbjct: 118 PSDEQL---KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLS 174
Query: 60 GFSITLEKVDRHQAGVYQCTATN-GVGDPVT 89
++TL K D + VY C T+ G+ PVT
Sbjct: 175 S-TLTLSKADYEKHKVYACEVTHQGLSSPVT 204
>pdb|1IGC|L Chain L, Igg1 Fab Fragment (Mopc21) Complex With Domain Iii Of
Protein G From Streptococcus
Length = 213
Score = 25.8 bits (55), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 21/84 (25%)
Query: 14 SPSNGQLTVRKGGTITLECKASGNPVPSIIW----------------SKKDSSLP---SG 54
SP + ++V G +TL CKAS N V + W S + + +P +G
Sbjct: 7 SPKSMSMSV--GERVTLTCKASENVVTYVSWYQQKPEQSPKLLIYGASNRYTGVPDRFTG 64
Query: 55 EKSLEGFSITLEKVDRHQAGVYQC 78
S F++T+ V Y C
Sbjct: 65 SGSATDFTLTISSVQAEDLADYHC 88
>pdb|4HG4|K Chain K, Crystal Structure Of Fab 2g1 In Complex With A H2n2
Influenza Virus Hemagglutinin
pdb|4HG4|M Chain M, Crystal Structure Of Fab 2g1 In Complex With A H2n2
Influenza Virus Hemagglutinin
pdb|4HG4|O Chain O, Crystal Structure Of Fab 2g1 In Complex With A H2n2
Influenza Virus Hemagglutinin
pdb|4HG4|Q Chain Q, Crystal Structure Of Fab 2g1 In Complex With A H2n2
Influenza Virus Hemagglutinin
pdb|4HG4|S Chain S, Crystal Structure Of Fab 2g1 In Complex With A H2n2
Influenza Virus Hemagglutinin
pdb|4HG4|U Chain U, Crystal Structure Of Fab 2g1 In Complex With A H2n2
Influenza Virus Hemagglutinin
pdb|4HG4|W Chain W, Crystal Structure Of Fab 2g1 In Complex With A H2n2
Influenza Virus Hemagglutinin
pdb|4HG4|Y Chain Y, Crystal Structure Of Fab 2g1 In Complex With A H2n2
Influenza Virus Hemagglutinin
pdb|4HG4|ZZ Chain z, Crystal Structure Of Fab 2g1 In Complex With A H2n2
Influenza Virus Hemagglutinin
Length = 214
Score = 25.8 bits (55), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 20/91 (21%)
Query: 15 PSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEK--------------SLE 59
PS+ QL K GT ++ C + P + + K D++L SG SL
Sbjct: 120 PSDEQL---KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLS 176
Query: 60 GFSITLEKVDRHQAGVYQCTATN-GVGDPVT 89
++TL K D + VY C T+ G+ PVT
Sbjct: 177 S-TLTLSKADYEKHKVYACEVTHQGLSSPVT 206
>pdb|1L7I|L Chain L, Crystal Structure Of The Anti-Erbb2 Fab2c4
pdb|1S78|C Chain C, Insights Into Erbb Signaling From The Structure Of The
Erbb2- Pertuzumab Complex
pdb|1S78|E Chain E, Insights Into Erbb Signaling From The Structure Of The
Erbb2- Pertuzumab Complex
Length = 214
Score = 25.8 bits (55), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 20/91 (21%)
Query: 15 PSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEK--------------SLE 59
PS+ QL K GT ++ C + P + + K D++L SG SL
Sbjct: 120 PSDEQL---KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLS 176
Query: 60 GFSITLEKVDRHQAGVYQCTATN-GVGDPVT 89
++TL K D + VY C T+ G+ PVT
Sbjct: 177 S-TLTLSKADYEKHKVYACEVTHQGLSSPVT 206
>pdb|3O11|L Chain L, Anti-Beta-Amyloid Antibody C706 Fab In Space Group C2
pdb|3O11|A Chain A, Anti-Beta-Amyloid Antibody C706 Fab In Space Group C2
Length = 212
Score = 25.8 bits (55), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 20/91 (21%)
Query: 15 PSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEK--------------SLE 59
PS+ QL K GT ++ C + P + + K D++L SG SL
Sbjct: 118 PSDEQL---KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLS 174
Query: 60 GFSITLEKVDRHQAGVYQCTATN-GVGDPVT 89
++TL K D + VY C T+ G+ PVT
Sbjct: 175 S-TLTLSKADYEKHKVYACEVTHQGLSSPVT 204
>pdb|3EFF|A Chain A, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
pdb|3EFF|C Chain C, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
Length = 215
Score = 25.8 bits (55), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 20/91 (21%)
Query: 15 PSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEK--------------SLE 59
PS+ QL K GT ++ C + P + + K D++L SG SL
Sbjct: 122 PSDEQL---KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLS 178
Query: 60 GFSITLEKVDRHQAGVYQCTATN-GVGDPVT 89
++TL K D + VY C T+ G+ PVT
Sbjct: 179 S-TLTLSKADYEKHKVYACEVTHQGLSSPVT 208
>pdb|1GAF|L Chain L, 48g7 Hybridoma Line Fab Complexed With Hapten 5-(Para-
Nitrophenyl Phosphonate)-Pentanoic Acid
Length = 214
Score = 25.8 bits (55), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 20/91 (21%)
Query: 15 PSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEK--------------SLE 59
PS+ QL K GT ++ C + P + + K D++L SG SL
Sbjct: 120 PSDEQL---KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLS 176
Query: 60 GFSITLEKVDRHQAGVYQCTATN-GVGDPVT 89
++TL K D + VY C T+ G+ PVT
Sbjct: 177 S-TLTLSKADYEKHKVYACEVTHQGLSSPVT 206
>pdb|2ICW|J Chain J, Crystal Structure Of A Complete Ternary Complex Between
Tcr, Superantigen, And Peptide-Mhc Class Ii Molecule
pdb|2ICW|L Chain L, Crystal Structure Of A Complete Ternary Complex Between
Tcr, Superantigen, And Peptide-Mhc Class Ii Molecule
Length = 113
Score = 25.8 bits (55), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 31/82 (37%), Gaps = 24/82 (29%)
Query: 25 GGTITLECKASGNPVPSIIWSKKDSS-------------------LPSGEK----SLEGF 61
G +TL C + N ++ W ++D+ +P G K S E F
Sbjct: 16 GEKVTLSCNQTNNH-NNMYWYRQDTGHELRLIHYSYGAGSTEKGDIPDGYKASRPSQENF 74
Query: 62 SITLEKVDRHQAGVYQCTATNG 83
S+ LE Q VY C + G
Sbjct: 75 SLILESATPSQTSVYFCASGGG 96
>pdb|3QOS|L Chain L, Crystal Structure Of Human Germline Antibody 3-23B3
pdb|3QOS|A Chain A, Crystal Structure Of Human Germline Antibody 3-23B3
Length = 220
Score = 25.8 bits (55), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 20/91 (21%)
Query: 15 PSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEK--------------SLE 59
PS+ QL K GT ++ C + P + + K D++L SG SL
Sbjct: 126 PSDEQL---KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLS 182
Query: 60 GFSITLEKVDRHQAGVYQCTATN-GVGDPVT 89
++TL K D + VY C T+ G+ PVT
Sbjct: 183 S-TLTLSKADYEKHKVYACEVTHQGLSSPVT 212
>pdb|3L95|A Chain A, Crystal Structure Of The Human Notch1 Negative Regulatory
Region (Nrr) Bound To The Fab Fragment Of An Antagonist
Antibody
pdb|3L95|L Chain L, Crystal Structure Of The Human Notch1 Negative Regulatory
Region (Nrr) Bound To The Fab Fragment Of An Antagonist
Antibody
Length = 214
Score = 25.8 bits (55), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 20/91 (21%)
Query: 15 PSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEK--------------SLE 59
PS+ QL K GT ++ C + P + + K D++L SG SL
Sbjct: 120 PSDEQL---KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLS 176
Query: 60 GFSITLEKVDRHQAGVYQCTATN-GVGDPVT 89
++TL K D + VY C T+ G+ PVT
Sbjct: 177 S-TLTLSKADYEKHKVYACEVTHQGLSSPVT 206
>pdb|2VXQ|L Chain L, Crystal Structure Of The Major Grass Pollen Allergen Phl P
2 In Complex With Its Specific Ige-Fab
Length = 214
Score = 25.8 bits (55), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 20/91 (21%)
Query: 15 PSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEK--------------SLE 59
PS+ QL K GT ++ C + P + + K D++L SG SL
Sbjct: 120 PSDEQL---KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLS 176
Query: 60 GFSITLEKVDRHQAGVYQCTATN-GVGDPVT 89
++TL K D + VY C T+ G+ PVT
Sbjct: 177 S-TLTLSKADYEKHKVYACEVTHQGLSSPVT 206
>pdb|1A7P|L Chain L, Fv Fragment Of Mouse Monoclonal Antibody D1.3 (BalbC,
IGG1, K) Engineered Mutant Pro95l->ser On Variant Chain
L Glu81- >asp And Chain H Leu312->val
Length = 107
Score = 25.8 bits (55), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 20 LTVRKGGTITLECKASGNPVPSIIWSKK 47
L+ G T+T+ C+ASGN + W ++
Sbjct: 11 LSASVGETVTITCRASGNIHNYLAWYQQ 38
>pdb|2RCS|L Chain L, Immunoglobulin 48g7 Germline Fab-Affinity Maturation Of An
Esterolytic Antibody
Length = 214
Score = 25.8 bits (55), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 20/91 (21%)
Query: 15 PSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEK--------------SLE 59
PS+ QL K GT ++ C + P + + K D++L SG SL
Sbjct: 120 PSDEQL---KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLS 176
Query: 60 GFSITLEKVDRHQAGVYQCTATN-GVGDPVT 89
++TL K D + VY C T+ G+ PVT
Sbjct: 177 S-TLTLSKADYEKHKVYACEVTHQGLSSPVT 206
>pdb|1NGY|A Chain A, Chimeric Mature Fab 7g12-Apo
Length = 213
Score = 25.8 bits (55), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 20/91 (21%)
Query: 15 PSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEK--------------SLE 59
PS+ QL K GT ++ C + P + + K D++L SG SL
Sbjct: 120 PSDEQL---KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLS 176
Query: 60 GFSITLEKVDRHQAGVYQCTATN-GVGDPVT 89
++TL K D + VY C T+ G+ PVT
Sbjct: 177 S-TLTLSKADYEKHKVYACEVTHQGLSSPVT 206
>pdb|3HR5|L Chain L, M1prime Peptide From Ige Bound By Humanized Antibody 47h4
Fab
pdb|3HR5|A Chain A, M1prime Peptide From Ige Bound By Humanized Antibody 47h4
Fab
pdb|3HR5|P Chain P, M1prime Peptide From Ige Bound By Humanized Antibody 47h4
Fab
pdb|3HR5|Q Chain Q, M1prime Peptide From Ige Bound By Humanized Antibody 47h4
Fab
Length = 219
Score = 25.8 bits (55), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 20/91 (21%)
Query: 15 PSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEK--------------SLE 59
PS+ QL K GT ++ C + P + + K D++L SG SL
Sbjct: 125 PSDEQL---KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLS 181
Query: 60 GFSITLEKVDRHQAGVYQCTATN-GVGDPVT 89
++TL K D + VY C T+ G+ PVT
Sbjct: 182 S-TLTLSKADYEKHKVYACEVTHQGLSSPVT 211
>pdb|3GIZ|L Chain L, Crystal Structure Of The Fab Fragment Of Anti-Cd20
Antibody Ofatumumab
Length = 211
Score = 25.8 bits (55), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 20/91 (21%)
Query: 15 PSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEK--------------SLE 59
PS+ QL K GT ++ C + P + + K D++L SG SL
Sbjct: 120 PSDEQL---KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLS 176
Query: 60 GFSITLEKVDRHQAGVYQCTATN-GVGDPVT 89
++TL K D + VY C T+ G+ PVT
Sbjct: 177 S-TLTLSKADYEKHKVYACEVTHQGLSSPVT 206
>pdb|1AJ7|L Chain L, Immunoglobulin 48g7 Germline Fab Antibody Complexed With
Hapten 5-(Para-Nitrophenyl Phosphonate)-Pentanoic Acid.
Affinity Maturation Of An Esterolytic Antibody
Length = 214
Score = 25.8 bits (55), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 20/91 (21%)
Query: 15 PSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEK--------------SLE 59
PS+ QL K GT ++ C + P + + K D++L SG SL
Sbjct: 120 PSDEQL---KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLS 176
Query: 60 GFSITLEKVDRHQAGVYQCTATN-GVGDPVT 89
++TL K D + VY C T+ G+ PVT
Sbjct: 177 S-TLTLSKADYEKHKVYACEVTHQGLSSPVT 206
>pdb|1MIM|L Chain L, Igg Fab Fragment (Cd25-Binding)
pdb|3IU3|B Chain B, Crystal Structure Of The Fab Fragment Of Therapeutic
Antibody Basiliximab In Complex With Il-2ra (Cd25)
Ectodomain
pdb|3IU3|D Chain D, Crystal Structure Of The Fab Fragment Of Therapeutic
Antibody Basiliximab In Complex With Il-2ra (Cd25)
Ectodomain
pdb|3IU3|L Chain L, Crystal Structure Of The Fab Fragment Of Therapeutic
Antibody Basiliximab In Complex With Il-2ra (Cd25)
Ectodomain
Length = 210
Score = 25.8 bits (55), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 20/91 (21%)
Query: 15 PSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEK--------------SLE 59
PS+ QL K GT ++ C + P + + K D++L SG SL
Sbjct: 117 PSDEQL---KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLS 173
Query: 60 GFSITLEKVDRHQAGVYQCTATN-GVGDPVT 89
++TL K D + VY C T+ G+ PVT
Sbjct: 174 S-TLTLSKADYEKHKVYACEVTHQGLSSPVT 203
>pdb|1S3K|L Chain L, Crystal Structure Of A Humanized Fab (Hu3s193) In Complex
With The Lewis Y Tetrasaccharide
pdb|3EYV|L Chain L, Anti-Lewis Y Fab Fragment With Lewis Y Antigen In The
Presence Of Zinc Ions
pdb|3EYV|A Chain A, Anti-Lewis Y Fab Fragment With Lewis Y Antigen In The
Presence Of Zinc Ions
Length = 219
Score = 25.8 bits (55), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 20/91 (21%)
Query: 15 PSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEK--------------SLE 59
PS+ QL K GT ++ C + P + + K D++L SG SL
Sbjct: 125 PSDEQL---KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLS 181
Query: 60 GFSITLEKVDRHQAGVYQCTATN-GVGDPVT 89
++TL K D + VY C T+ G+ PVT
Sbjct: 182 S-TLTLSKADYEKHKVYACEVTHQGLSSPVT 211
>pdb|2WUB|L Chain L, Crystal Structure Of Hgfa In Complex With The Allosteric
Non-Inhibitory Antibody Fab40.Deltatrp
pdb|2WUB|Q Chain Q, Crystal Structure Of Hgfa In Complex With The Allosteric
Non-Inhibitory Antibody Fab40.Deltatrp
pdb|2WUC|L Chain L, Crystal Structure Of Hgfa In Complex With The Allosteric
Non- Inhibitory Antibody Fab40.Deltatrp And
Ac-Kqlr-Chloromethylketone
pdb|3K2U|L Chain L, Crystal Structure Of Hgfa In Complex With The Allosteric
Inhibitory Antibody Fab40
Length = 214
Score = 25.8 bits (55), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 20/91 (21%)
Query: 15 PSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEK--------------SLE 59
PS+ QL K GT ++ C + P + + K D++L SG SL
Sbjct: 120 PSDEQL---KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLS 176
Query: 60 GFSITLEKVDRHQAGVYQCTATN-GVGDPVT 89
++TL K D + VY C T+ G+ PVT
Sbjct: 177 S-TLTLSKADYEKHKVYACEVTHQGLSSPVT 206
>pdb|3I9G|L Chain L, Crystal Structure Of The Lt1009 (Sonepcizumab) Antibody
Fab Fragment In Complex With Sphingosine-1-Phosphate
Length = 213
Score = 25.8 bits (55), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 20/91 (21%)
Query: 15 PSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEK--------------SLE 59
PS+ QL K GT ++ C + P + + K D++L SG SL
Sbjct: 120 PSDEQL---KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLS 176
Query: 60 GFSITLEKVDRHQAGVYQCTATN-GVGDPVT 89
++TL K D + VY C T+ G+ PVT
Sbjct: 177 S-TLTLSKADYEKHKVYACEVTHQGLSSPVT 206
>pdb|2R8S|L Chain L, High Resolution Structure Of A Specific Synthetic Fab
Bound To P4-P6 Rna Ribozyme Domain
Length = 214
Score = 25.8 bits (55), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 20/91 (21%)
Query: 15 PSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEK--------------SLE 59
PS+ QL K GT ++ C + P + + K D++L SG SL
Sbjct: 120 PSDEQL---KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLS 176
Query: 60 GFSITLEKVDRHQAGVYQCTATN-GVGDPVT 89
++TL K D + VY C T+ G+ PVT
Sbjct: 177 S-TLTLSKADYEKHKVYACEVTHQGLSSPVT 206
>pdb|2QQK|L Chain L, Neuropilin-2 A1a2b1b2 Domains In Complex With A
Semaphorin-Blocking Fab
pdb|2QQL|L Chain L, Neuropilin-2 A1a2b1b2 Domains In Complex With A
Semaphorin-Blocking Fab
Length = 214
Score = 25.8 bits (55), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 20/91 (21%)
Query: 15 PSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEK--------------SLE 59
PS+ QL K GT ++ C + P + + K D++L SG SL
Sbjct: 120 PSDEQL---KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLS 176
Query: 60 GFSITLEKVDRHQAGVYQCTATN-GVGDPVT 89
++TL K D + VY C T+ G+ PVT
Sbjct: 177 S-TLTLSKADYEKHKVYACEVTHQGLSSPVT 206
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.131 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,667,457
Number of Sequences: 62578
Number of extensions: 197508
Number of successful extensions: 2282
Number of sequences better than 100.0: 511
Number of HSP's better than 100.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 358
Number of HSP's that attempted gapping in prelim test: 1520
Number of HSP's gapped (non-prelim): 1080
length of query: 147
length of database: 14,973,337
effective HSP length: 90
effective length of query: 57
effective length of database: 9,341,317
effective search space: 532455069
effective search space used: 532455069
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.7 bits)