Query psy7616
Match_columns 147
No_of_seqs 112 out of 1301
Neff 11.7
Searched_HMMs 46136
Date Fri Aug 16 22:54:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7616.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7616hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3513|consensus 99.9 7.3E-21 1.6E-25 136.1 15.9 140 3-146 326-513 (1051)
2 KOG3513|consensus 99.9 4.2E-20 9.1E-25 132.3 14.5 138 7-147 239-421 (1051)
3 KOG4194|consensus 99.8 1.7E-17 3.8E-22 113.2 11.1 137 8-147 503-704 (873)
4 KOG4194|consensus 99.8 4.1E-17 8.9E-22 111.4 12.6 142 2-147 606-796 (873)
5 cd05762 Ig8_MLCK Eighth immuno 99.7 3.6E-16 7.7E-21 85.8 10.6 92 9-103 1-97 (98)
6 cd05851 Ig3_Contactin-1 Third 99.7 1.1E-15 2.4E-20 82.4 11.0 86 8-96 1-87 (88)
7 PHA02785 IL-beta-binding prote 99.7 1.5E-15 3.3E-20 100.0 12.4 116 21-137 37-203 (326)
8 PHA02826 IL-1 receptor-like pr 99.7 1E-15 2.2E-20 95.6 10.8 128 19-147 31-227 (227)
9 KOG4222|consensus 99.7 1.2E-15 2.7E-20 109.8 10.9 140 6-147 29-223 (1281)
10 KOG4221|consensus 99.7 5.1E-15 1.1E-19 107.4 13.2 137 8-147 140-326 (1381)
11 cd05740 Ig_CEACAM_D4 Fourth im 99.6 1.5E-14 3.3E-19 78.3 9.7 87 9-96 2-90 (91)
12 cd05730 Ig3_NCAM-1_like Third 99.6 1.6E-14 3.4E-19 79.1 9.4 89 8-97 1-93 (95)
13 cd04968 Ig3_Contactin_like Thi 99.6 6.7E-14 1.4E-18 75.5 10.9 85 9-96 2-87 (88)
14 KOG4221|consensus 99.6 8.4E-15 1.8E-19 106.3 9.1 125 19-145 246-414 (1381)
15 cd04975 Ig4_SCFR_like Fourth i 99.6 3.9E-14 8.4E-19 78.0 9.7 78 19-97 12-100 (101)
16 cd05747 Ig5_Titin_like M5, fif 99.6 3.3E-14 7.2E-19 77.3 9.4 85 7-94 2-91 (92)
17 cd05745 Ig3_Peroxidasin Third 99.6 1.4E-14 3.1E-19 75.6 7.3 71 24-95 1-73 (74)
18 cd05869 Ig5_NCAM-1 Fifth immun 99.6 1E-13 2.3E-18 76.0 10.1 85 8-95 2-96 (97)
19 cd05867 Ig4_L1-CAM_like Fourth 99.6 4.3E-14 9.4E-19 74.1 8.2 71 25-96 1-75 (76)
20 cd05852 Ig5_Contactin-1 Fifth 99.6 3.4E-14 7.3E-19 73.8 7.3 70 25-95 1-72 (73)
21 cd05735 Ig8_DSCAM Eight immuno 99.6 1.1E-13 2.3E-18 74.5 9.3 77 25-102 1-87 (88)
22 cd05737 Ig_Myomesin_like_C C-t 99.6 1E-13 2.2E-18 75.3 9.3 76 19-95 10-91 (92)
23 cd05894 Ig_C5_MyBP-C C5 immuno 99.6 7.4E-14 1.6E-18 74.8 8.5 76 19-95 4-85 (86)
24 cd07693 Ig1_Robo First immunog 99.6 2.4E-13 5.3E-18 74.9 10.7 87 8-96 1-99 (100)
25 cd05728 Ig4_Contactin-2-like F 99.5 1.1E-13 2.4E-18 74.1 8.4 76 19-95 8-84 (85)
26 cd05864 Ig2_VEGFR-2 Second imm 99.5 5.5E-14 1.2E-18 72.3 6.4 59 29-87 2-60 (70)
27 cd05773 Ig8_hNephrin_like Eigh 99.5 2E-13 4.3E-18 76.4 9.2 94 6-100 2-108 (109)
28 cd05848 Ig1_Contactin-5 First 99.5 3.8E-13 8.2E-18 73.3 9.7 83 9-93 2-91 (94)
29 cd05865 Ig1_NCAM-1 First immun 99.5 4.9E-13 1.1E-17 73.0 10.0 78 19-96 9-95 (96)
30 cd05859 Ig4_PDGFR-alpha Fourth 99.5 2.5E-13 5.3E-18 74.9 8.8 76 20-96 13-99 (101)
31 cd05868 Ig4_NrCAM Fourth immun 99.5 1.4E-13 3.1E-18 72.1 7.4 71 25-96 1-75 (76)
32 cd04972 Ig_TrkABC_d4 Fourth do 99.5 3.3E-13 7.1E-18 73.1 9.0 76 19-95 9-89 (90)
33 cd05849 Ig1_Contactin-1 First 99.5 4.8E-13 1.1E-17 72.7 9.6 70 25-94 19-91 (93)
34 cd05863 Ig2_VEGFR-3 Second imm 99.5 8.2E-14 1.8E-18 70.9 6.2 65 28-96 1-65 (67)
35 KOG4222|consensus 99.5 1.6E-13 3.4E-18 99.3 9.5 137 7-146 130-312 (1281)
36 cd05724 Ig2_Robo Second immuno 99.5 5E-13 1.1E-17 71.7 9.4 76 19-94 5-84 (86)
37 cd04978 Ig4_L1-NrCAM_like Four 99.5 2.3E-13 5.1E-18 71.3 7.9 71 25-96 1-75 (76)
38 PF07679 I-set: Immunoglobulin 99.5 1.5E-13 3.2E-18 74.4 7.1 84 9-95 1-89 (90)
39 cd04969 Ig5_Contactin_like Fif 99.5 2E-13 4.4E-18 71.0 7.3 70 25-95 1-72 (73)
40 PHA02785 IL-beta-binding prote 99.5 1.8E-12 4E-17 85.5 13.1 65 21-86 132-202 (326)
41 cd05857 Ig2_FGFR Second immuno 99.5 4E-13 8.7E-18 71.9 8.3 75 20-95 4-84 (85)
42 cd05732 Ig5_NCAM-1_like Fifth 99.5 7.4E-13 1.6E-17 72.5 9.5 84 8-95 2-95 (96)
43 cd05876 Ig3_L1-CAM Third immun 99.5 3.1E-13 6.7E-18 69.9 7.4 68 28-96 1-70 (71)
44 cd05870 Ig5_NCAM-2 Fifth immun 99.5 1.1E-12 2.4E-17 72.1 9.9 84 7-94 1-96 (98)
45 cd05723 Ig4_Neogenin Fourth im 99.5 5.2E-13 1.1E-17 69.1 8.1 68 27-95 1-70 (71)
46 cd05892 Ig_Myotilin_C C-termin 99.5 2.9E-13 6.3E-18 70.6 6.9 67 28-95 1-74 (75)
47 cd05722 Ig1_Neogenin First imm 99.5 1.7E-12 3.7E-17 70.9 10.1 77 19-95 8-94 (95)
48 cd04973 Ig1_FGFR First immunog 99.5 1.4E-12 3.1E-17 68.8 9.4 74 19-94 3-77 (79)
49 cd05850 Ig1_Contactin-2 First 99.5 2.5E-12 5.3E-17 70.1 10.5 84 9-94 2-92 (94)
50 cd04976 Ig2_VEGFR Second immun 99.5 4.7E-13 1E-17 69.2 6.9 68 28-96 1-69 (71)
51 cd05726 Ig4_Robo Fhird immunog 99.5 1.6E-12 3.6E-17 70.3 9.4 74 25-99 1-84 (90)
52 cd05856 Ig2_FGFRL1-like Second 99.5 1.1E-12 2.3E-17 69.8 8.3 75 20-95 4-81 (82)
53 cd05749 Ig2_Tyro3_like Second 99.5 9.2E-13 2E-17 69.6 7.8 72 19-93 7-79 (81)
54 cd05725 Ig3_Robo Third immunog 99.5 9.5E-13 2E-17 67.7 7.7 67 28-95 1-68 (69)
55 cd05854 Ig6_Contactin-2 Sixth 99.5 1.2E-12 2.7E-17 69.9 8.3 74 26-100 1-85 (85)
56 cd05748 Ig_Titin_like Immunogl 99.4 1.2E-12 2.6E-17 68.3 7.8 67 28-95 2-73 (74)
57 cd05866 Ig1_NCAM-2 First immun 99.4 1.6E-12 3.4E-17 70.4 8.4 76 19-95 9-90 (92)
58 cd05891 Ig_M-protein_C C-termi 99.4 1.6E-12 3.4E-17 70.6 8.4 76 19-95 10-91 (92)
59 cd04970 Ig6_Contactin_like Six 99.4 7.9E-13 1.7E-17 70.8 7.1 74 26-100 1-85 (85)
60 cd05738 Ig2_RPTP_IIa_LAR_like 99.4 8.3E-13 1.8E-17 68.8 6.9 68 29-96 2-73 (74)
61 cd05893 Ig_Palladin_C C-termin 99.4 7E-13 1.5E-17 69.2 6.3 67 28-95 1-74 (75)
62 cd05853 Ig6_Contactin-4 Sixth 99.4 1.3E-12 2.9E-17 69.4 7.3 74 26-100 1-85 (85)
63 cd05739 Ig3_RPTP_IIa_LAR_like 99.4 2.1E-12 4.6E-17 66.3 7.6 66 25-93 1-67 (69)
64 cd05855 Ig_TrkB_d5 Fifth domai 99.4 1.6E-12 3.4E-17 68.2 7.1 64 30-94 3-76 (79)
65 cd05746 Ig4_Peroxidasin Fourth 99.4 8.2E-13 1.8E-17 67.9 5.8 65 28-93 1-67 (69)
66 cd05756 Ig1_IL1R_like First im 99.4 3.7E-12 8E-17 69.3 8.6 76 19-95 8-93 (94)
67 cd05760 Ig2_PTK7 Second immuno 99.4 2.7E-12 5.8E-17 67.4 7.6 69 28-96 1-74 (77)
68 cd05744 Ig_Myotilin_C_like Imm 99.4 4E-12 8.6E-17 66.4 7.5 67 28-95 1-74 (75)
69 cd05764 Ig_2 Subgroup of the i 99.4 5.9E-12 1.3E-16 65.6 8.1 70 25-95 1-73 (74)
70 cd04971 Ig_TrKABC_d5 Fifth dom 99.4 3.5E-12 7.6E-17 67.5 7.1 65 30-95 3-79 (81)
71 cd05731 Ig3_L1-CAM_like Third 99.4 2.3E-12 4.9E-17 66.6 6.3 68 28-96 1-70 (71)
72 cd04977 Ig1_NCAM-1_like First 99.4 7.8E-12 1.7E-16 67.9 8.6 76 19-95 9-91 (92)
73 cd05752 Ig1_FcgammaR_like Frst 99.4 5.6E-12 1.2E-16 66.2 7.8 66 10-83 2-68 (78)
74 cd05763 Ig_1 Subgroup of the i 99.4 7.5E-12 1.6E-16 65.4 8.2 67 29-96 2-74 (75)
75 cd04979 Ig_Semaphorin_C Immuno 99.4 2.1E-11 4.6E-16 65.8 9.5 78 19-97 5-87 (89)
76 cd05743 Ig_Perlecan_D2_like Im 99.4 5.7E-12 1.2E-16 66.4 7.0 63 25-87 1-68 (78)
77 cd04974 Ig3_FGFR Third immunog 99.4 1E-11 2.2E-16 67.2 8.1 71 25-96 1-89 (90)
78 cd05734 Ig7_DSCAM Seventh immu 99.4 9E-12 1.9E-16 65.8 7.4 68 28-95 1-78 (79)
79 cd07702 Ig2_VEGFR-1 Second imm 99.3 6.4E-12 1.4E-16 64.8 6.5 58 29-86 2-61 (72)
80 cd05753 Ig2_FcgammaR_like Seco 99.3 7.3E-12 1.6E-16 66.6 6.8 72 21-95 10-82 (83)
81 cd05765 Ig_3 Subgroup of the i 99.3 1.6E-11 3.6E-16 65.0 8.2 70 25-95 1-80 (81)
82 cd05858 Ig3_FGFR-2 Third immun 99.3 1.7E-11 3.7E-16 66.3 7.8 71 25-96 1-89 (90)
83 cd05733 Ig6_L1-CAM_like Sixth 99.3 1.2E-11 2.7E-16 64.9 6.9 65 28-92 1-74 (77)
84 cd05874 Ig6_NrCAM Sixth immuno 99.3 1.9E-11 4.1E-16 64.1 7.4 66 28-93 1-75 (77)
85 cd05742 Ig1_VEGFR_like First i 99.3 2.7E-11 5.9E-16 64.7 8.1 70 25-95 1-82 (84)
86 cd04967 Ig1_Contactin First Ig 99.3 3.4E-11 7.3E-16 65.3 8.6 65 24-88 18-86 (91)
87 cd05750 Ig_Pro_neuregulin Immu 99.3 1.5E-11 3.3E-16 64.2 6.7 60 28-87 1-69 (75)
88 cd05736 Ig2_Follistatin_like S 99.3 3.1E-11 6.8E-16 63.2 7.5 68 29-97 2-74 (76)
89 cd05754 Ig3_Perlecan_like Thir 99.3 7.8E-11 1.7E-15 63.0 9.0 68 19-87 10-78 (85)
90 cd05758 Ig5_KIRREL3-like Fifth 99.3 1.3E-10 2.9E-15 63.8 9.8 82 8-93 2-96 (98)
91 cd05882 Ig1_Necl-1 First (N-te 99.3 9.8E-11 2.1E-15 63.8 9.1 67 17-83 4-84 (95)
92 cd05875 Ig6_hNeurofascin_like 99.3 5E-11 1.1E-15 62.5 7.4 66 28-93 1-75 (77)
93 cd05863 Ig2_VEGFR-3 Second imm 99.3 1.2E-11 2.5E-16 62.9 4.7 50 96-146 9-65 (67)
94 cd05873 Ig_Sema4D_like Immunog 99.3 4.7E-11 1E-15 63.7 6.9 64 19-83 5-70 (87)
95 cd05852 Ig5_Contactin-1 Fifth 99.2 2.4E-11 5.2E-16 63.1 4.9 37 109-146 37-73 (73)
96 cd05729 Ig2_FGFR_like Second i 99.2 3.3E-10 7.2E-15 60.4 8.8 75 20-95 4-84 (85)
97 PF13895 Ig_2: Immunoglobulin 99.2 1.3E-10 2.8E-15 61.3 7.0 78 9-95 2-79 (80)
98 cd05861 Ig1_PDGFR-alphabeta Fr 99.2 5.2E-10 1.1E-14 59.6 9.2 72 25-96 1-82 (84)
99 cd05757 Ig2_IL1R_like Second i 99.2 3E-10 6.5E-15 61.5 7.9 67 21-87 6-78 (92)
100 cd05895 Ig_Pro_neuregulin-1 Im 99.2 2.2E-10 4.7E-15 60.0 6.8 60 28-87 1-70 (76)
101 cd05745 Ig3_Peroxidasin Third 99.2 6.7E-11 1.5E-15 61.6 4.6 37 109-146 38-74 (74)
102 cd05868 Ig4_NrCAM Fourth immun 99.2 1.3E-10 2.8E-15 60.8 5.3 38 109-147 39-76 (76)
103 cd07701 Ig1_Necl-3 First (N-te 99.1 1E-09 2.3E-14 59.8 8.8 68 18-85 5-86 (95)
104 cd04969 Ig5_Contactin_like Fif 99.1 1.5E-10 3.3E-15 60.1 4.9 37 109-146 37-73 (73)
105 cd05892 Ig_Myotilin_C C-termin 99.1 1.3E-10 2.9E-15 60.5 4.7 34 112-146 42-75 (75)
106 cd05763 Ig_1 Subgroup of the i 99.1 1.4E-10 2.9E-15 60.6 4.7 38 109-147 38-75 (75)
107 cd05723 Ig4_Neogenin Fourth im 99.1 2E-10 4.4E-15 59.3 5.3 36 110-146 36-71 (71)
108 cd05876 Ig3_L1-CAM Third immun 99.1 1.9E-10 4.1E-15 59.4 5.0 37 109-146 34-70 (71)
109 cd05864 Ig2_VEGFR-2 Second imm 99.1 1.5E-10 3.2E-15 59.5 4.5 38 109-146 32-70 (70)
110 cd05867 Ig4_L1-CAM_like Fourth 99.1 2.7E-10 5.9E-15 59.6 5.6 37 110-147 40-76 (76)
111 cd04976 Ig2_VEGFR Second immun 99.1 1.6E-10 3.4E-15 59.7 4.6 37 109-146 33-69 (71)
112 cd04974 Ig3_FGFR Third immunog 99.1 2.3E-10 5E-15 61.8 5.4 37 110-147 54-90 (90)
113 cd04978 Ig4_L1-NrCAM_like Four 99.1 2.1E-10 4.6E-15 60.0 5.0 39 108-147 38-76 (76)
114 cd05851 Ig3_Contactin-1 Third 99.1 3E-10 6.5E-15 61.1 5.4 38 109-147 51-88 (88)
115 cd05727 Ig2_Contactin-2-like S 99.1 1.1E-09 2.4E-14 59.4 7.4 68 19-86 12-85 (96)
116 cd05872 Ig_Sema4B_like Immunog 99.1 3.8E-09 8.3E-14 56.1 9.3 64 19-83 5-69 (85)
117 cd05762 Ig8_MLCK Eighth immuno 99.1 2.9E-10 6.3E-15 62.4 5.1 37 110-147 55-91 (98)
118 cd05748 Ig_Titin_like Immunogl 99.1 2.9E-10 6.4E-15 59.2 4.9 36 110-146 39-74 (74)
119 smart00408 IGc2 Immunoglobulin 99.1 1.7E-09 3.6E-14 54.0 7.4 61 24-84 1-62 (63)
120 cd05893 Ig_Palladin_C C-termin 99.1 2.2E-10 4.9E-15 59.7 4.1 34 112-146 42-75 (75)
121 cd05740 Ig_CEACAM_D4 Fourth im 99.1 3.3E-10 7.2E-15 61.3 4.7 38 109-146 53-90 (91)
122 cd04975 Ig4_SCFR_like Fourth i 99.1 5.1E-10 1.1E-14 61.6 5.4 36 111-147 65-100 (101)
123 cd05894 Ig_C5_MyBP-C C5 immuno 99.1 4.2E-10 9.1E-15 60.3 4.9 35 111-146 52-86 (86)
124 cd05855 Ig_TrkB_d5 Fifth domai 99.1 4.5E-10 9.8E-15 58.9 4.9 33 112-145 45-77 (79)
125 cd05760 Ig2_PTK7 Second immuno 99.1 8.4E-10 1.8E-14 57.9 5.8 38 110-147 37-75 (77)
126 cd05871 Ig_Semaphorin_classIII 99.1 1.1E-08 2.3E-13 55.4 10.2 75 20-96 6-88 (91)
127 cd05717 Ig1_Necl-1-3_like Firs 99.1 6.9E-09 1.5E-13 56.6 9.6 68 17-84 4-85 (95)
128 cd05738 Ig2_RPTP_IIa_LAR_like 99.1 7.2E-10 1.6E-14 57.7 5.4 38 109-146 36-73 (74)
129 cd05859 Ig4_PDGFR-alpha Fourth 99.1 5.9E-10 1.3E-14 61.4 5.3 36 111-147 65-100 (101)
130 cd04968 Ig3_Contactin_like Thi 99.0 1E-09 2.3E-14 59.0 6.1 38 109-147 51-88 (88)
131 cd05725 Ig3_Robo Third immunog 99.0 2.7E-10 5.8E-15 58.5 3.6 37 109-146 33-69 (69)
132 cd05731 Ig3_L1-CAM_like Third 99.0 4.7E-10 1E-14 57.9 4.5 36 110-146 35-70 (71)
133 cd05744 Ig_Myotilin_C_like Imm 99.0 5.9E-10 1.3E-14 58.2 4.6 34 112-146 42-75 (75)
134 cd05737 Ig_Myomesin_like_C C-t 99.0 9.3E-10 2E-14 59.7 5.2 34 112-146 59-92 (92)
135 cd05730 Ig3_NCAM-1_like Third 99.0 8.8E-10 1.9E-14 60.2 5.0 38 109-147 56-93 (95)
136 cd05746 Ig4_Peroxidasin Fourth 99.0 5.4E-10 1.2E-14 57.4 3.9 34 110-144 35-68 (69)
137 cd05862 Ig1_VEGFR First immuno 99.0 5.4E-09 1.2E-13 56.0 7.8 71 25-96 1-84 (86)
138 PF00047 ig: Immunoglobulin do 99.0 2.6E-09 5.6E-14 53.9 6.2 56 25-80 1-64 (64)
139 cd05845 Ig2_L1-CAM_like Second 99.0 4E-09 8.6E-14 57.1 7.0 67 19-85 12-83 (95)
140 cd05764 Ig_2 Subgroup of the i 99.0 9.6E-10 2.1E-14 57.2 4.5 37 109-146 38-74 (74)
141 cd05896 Ig1_IL1RAPL-1_like Fir 99.0 1.3E-08 2.9E-13 55.6 8.8 68 19-86 9-95 (104)
142 cd05728 Ig4_Contactin-2-like F 99.0 1.3E-09 2.9E-14 58.2 4.8 38 108-146 48-85 (85)
143 cd04971 Ig_TrKABC_d5 Fifth dom 99.0 1.6E-09 3.5E-14 57.3 5.1 33 112-145 47-79 (81)
144 cd05856 Ig2_FGFRL1-like Second 99.0 2.2E-09 4.7E-14 56.9 5.5 36 110-146 47-82 (82)
145 cd05735 Ig8_DSCAM Eight immuno 99.0 1.6E-09 3.6E-14 58.2 5.0 36 111-147 47-82 (88)
146 cd05898 Ig5_KIRREL3 Fifth immu 99.0 2E-08 4.4E-13 54.8 9.1 74 19-93 10-96 (98)
147 PHA02826 IL-1 receptor-like pr 99.0 1.4E-08 3E-13 63.9 9.4 65 19-83 138-210 (227)
148 cd05751 Ig1_LILRB1_like First 99.0 1.2E-08 2.6E-13 55.3 7.9 72 8-83 2-75 (91)
149 cd05858 Ig3_FGFR-2 Third immun 99.0 1.1E-09 2.3E-14 59.2 3.8 36 111-147 55-90 (90)
150 cd05870 Ig5_NCAM-2 Fifth immun 98.9 3.7E-09 8E-14 58.0 5.5 35 111-146 64-98 (98)
151 cd04972 Ig_TrkABC_d4 Fourth do 98.9 3.7E-09 8E-14 57.1 5.4 36 110-146 55-90 (90)
152 cd05765 Ig_3 Subgroup of the i 98.9 2.3E-09 5E-14 56.7 4.4 36 110-146 46-81 (81)
153 smart00409 IG Immunoglobulin. 98.9 9.6E-08 2.1E-12 50.4 10.7 76 19-95 3-84 (86)
154 smart00410 IG_like Immunoglobu 98.9 9.6E-08 2.1E-12 50.4 10.7 76 19-95 3-84 (86)
155 cd05866 Ig1_NCAM-2 First immun 98.9 1.9E-09 4.1E-14 58.4 3.9 37 111-147 56-92 (92)
156 cd05869 Ig5_NCAM-1 Fifth immun 98.9 4.9E-09 1.1E-13 57.4 5.6 35 111-146 63-97 (97)
157 cd07690 Ig1_CD4 First immunogl 98.9 7.2E-09 1.6E-13 56.2 6.0 66 21-86 3-90 (94)
158 cd05853 Ig6_Contactin-4 Sixth 98.9 2.3E-09 5E-14 57.0 3.8 38 109-147 45-82 (85)
159 cd04973 Ig1_FGFR First immunog 98.9 4.3E-09 9.3E-14 55.4 4.8 37 109-146 43-79 (79)
160 cd05854 Ig6_Contactin-2 Sixth 98.9 2.5E-09 5.4E-14 57.1 3.9 37 110-147 46-82 (85)
161 cd05857 Ig2_FGFR Second immuno 98.9 2.9E-09 6.2E-14 56.9 4.1 35 111-146 51-85 (85)
162 cd05865 Ig1_NCAM-1 First immun 98.9 3.6E-09 7.9E-14 57.8 4.4 36 111-147 60-96 (96)
163 cd05734 Ig7_DSCAM Seventh immu 98.9 5.2E-09 1.1E-13 55.1 4.9 38 109-146 42-79 (79)
164 cd05736 Ig2_Follistatin_like S 98.9 8.9E-09 1.9E-13 53.8 5.7 36 110-146 38-73 (76)
165 cd05724 Ig2_Robo Second immuno 98.9 5E-09 1.1E-13 56.0 4.6 37 110-146 50-86 (86)
166 cd05891 Ig_M-protein_C C-termi 98.9 1E-08 2.2E-13 55.6 5.6 34 112-146 59-92 (92)
167 cd07702 Ig2_VEGFR-1 Second imm 98.9 4.6E-09 1E-13 54.1 3.8 37 110-146 35-72 (72)
168 cd05732 Ig5_NCAM-1_like Fifth 98.8 1.1E-08 2.4E-13 55.9 5.5 35 111-146 62-96 (96)
169 cd05897 Ig2_IL1R2_like Second 98.8 5E-08 1.1E-12 53.0 7.7 66 21-86 6-80 (95)
170 cd05714 Ig_CSPGs_LP Immunoglob 98.8 2.8E-07 6.1E-12 51.3 11.0 36 110-146 67-102 (106)
171 cd04970 Ig6_Contactin_like Six 98.8 5.3E-09 1.2E-13 55.9 3.7 37 110-147 46-82 (85)
172 cd05879 Ig_P0 Immunoglobulin ( 98.8 4E-07 8.7E-12 51.4 11.4 38 109-146 78-116 (116)
173 cd05726 Ig4_Robo Fhird immunog 98.8 1.1E-08 2.3E-13 55.3 4.8 37 110-147 46-82 (90)
174 cd05774 Ig_CEACAM_D1 First imm 98.8 1.5E-07 3.4E-12 52.1 9.1 66 21-86 9-95 (105)
175 cd05860 Ig4_SCFR Fourth immuno 98.8 2.8E-07 6.1E-12 50.3 9.8 77 19-96 12-99 (101)
176 cd05900 Ig_Aggrecan Immunoglob 98.8 3.7E-07 8E-12 51.2 10.6 37 109-146 72-108 (112)
177 cd05743 Ig_Perlecan_D2_like Im 98.8 1.1E-08 2.4E-13 53.7 4.1 27 111-137 42-68 (78)
178 cd05848 Ig1_Contactin-5 First 98.8 1.8E-08 3.9E-13 54.9 4.9 35 110-144 57-92 (94)
179 cd05747 Ig5_Titin_like M5, fif 98.8 2.1E-08 4.6E-13 54.4 5.2 34 110-144 58-91 (92)
180 cd04977 Ig1_NCAM-1_like First 98.8 1.6E-08 3.5E-13 54.8 4.6 36 111-146 57-92 (92)
181 cd05885 Ig2_Necl-4 Second immu 98.8 1.4E-07 3.1E-12 49.4 7.8 60 28-87 2-69 (80)
182 cd05741 Ig_CEACAM_D1_like Firs 98.8 1.2E-07 2.6E-12 51.3 7.7 70 25-94 1-90 (92)
183 cd07694 Ig2_CD4 Second immunog 98.7 4.8E-07 1E-11 47.8 9.2 74 21-96 10-85 (88)
184 cd05880 Ig_EVA1 Immunoglobulin 98.7 6.9E-07 1.5E-11 50.5 10.6 37 110-146 78-115 (115)
185 cd05742 Ig1_VEGFR_like First i 98.7 2.1E-08 4.5E-13 53.5 4.1 37 110-147 48-84 (84)
186 cd05733 Ig6_L1-CAM_like Sixth 98.7 2E-08 4.4E-13 52.6 3.9 35 110-144 38-76 (77)
187 PF07679 I-set: Immunoglobulin 98.7 1.4E-08 3.1E-13 54.7 3.4 36 110-146 55-90 (90)
188 cd05877 Ig_LP_like Immunoglobu 98.7 5.9E-07 1.3E-11 50.0 9.9 36 110-146 67-102 (106)
189 cd05722 Ig1_Neogenin First imm 98.7 3.5E-08 7.7E-13 53.8 4.7 37 110-146 53-95 (95)
190 PF13927 Ig_3: Immunoglobulin 98.7 2.2E-08 4.8E-13 51.8 3.5 72 8-82 1-75 (75)
191 cd05850 Ig1_Contactin-2 First 98.7 4.9E-08 1.1E-12 53.1 4.9 36 110-145 57-93 (94)
192 cd05756 Ig1_IL1R_like First im 98.7 3.4E-08 7.4E-13 53.7 4.0 36 110-146 59-94 (94)
193 cd05773 Ig8_hNephrin_like Eigh 98.7 8E-08 1.7E-12 53.8 5.3 37 110-147 68-105 (109)
194 cd05715 Ig_P0-like Immunoglobu 98.7 1.4E-06 3E-11 49.3 10.4 37 110-146 79-116 (116)
195 cd05739 Ig3_RPTP_IIa_LAR_like 98.7 7.9E-08 1.7E-12 49.2 4.8 30 112-144 39-68 (69)
196 cd05849 Ig1_Contactin-1 First 98.7 2.7E-08 5.8E-13 54.0 3.1 37 109-145 55-92 (93)
197 cd05886 Ig1_Nectin-1_like Firs 98.6 9.6E-08 2.1E-12 52.4 4.9 38 109-147 61-99 (99)
198 cd05881 Ig1_Necl-2 First (N-te 98.6 1.2E-06 2.7E-11 47.6 9.1 69 18-86 5-87 (95)
199 cd05874 Ig6_NrCAM Sixth immuno 98.6 5.8E-08 1.3E-12 50.8 3.8 35 110-144 38-76 (77)
200 KOG3515|consensus 98.6 1.8E-07 3.9E-12 67.0 7.3 77 21-97 18-95 (741)
201 cd05759 Ig2_KIRREL3-like Secon 98.6 5.7E-07 1.2E-11 47.6 7.6 57 28-84 2-69 (82)
202 cd07693 Ig1_Robo First immunog 98.6 1.2E-07 2.5E-12 52.0 5.1 30 118-147 71-100 (100)
203 cd05861 Ig1_PDGFR-alphabeta Fr 98.6 9.6E-08 2.1E-12 50.9 4.5 38 110-147 45-83 (84)
204 cd04983 IgV_TCR_alpha_like Imm 98.6 8.3E-07 1.8E-11 49.6 8.4 65 19-83 7-92 (109)
205 PF07686 V-set: Immunoglobulin 98.6 5E-07 1.1E-11 50.6 7.2 37 110-146 78-114 (114)
206 cd05757 Ig2_IL1R_like Second i 98.6 1.6E-07 3.4E-12 50.9 4.8 29 109-137 50-78 (92)
207 cd05711 Ig_FcalphaRI Immunoglo 98.6 1.3E-06 2.9E-11 47.5 8.3 70 9-82 2-76 (94)
208 cd05862 Ig1_VEGFR First immuno 98.5 1.3E-07 2.9E-12 50.6 3.9 37 110-147 49-85 (86)
209 cd05875 Ig6_hNeurofascin_like 98.5 1.7E-07 3.6E-12 49.1 4.0 36 109-144 37-76 (77)
210 cd05895 Ig_Pro_neuregulin-1 Im 98.5 1.1E-07 2.4E-12 49.6 3.2 32 110-142 43-74 (76)
211 cd05750 Ig_Pro_neuregulin Immu 98.5 1.6E-07 3.4E-12 48.8 3.5 33 110-143 42-74 (75)
212 cd04979 Ig_Semaphorin_C Immuno 98.5 2.3E-07 4.9E-12 50.0 3.9 38 110-147 50-87 (89)
213 cd04967 Ig1_Contactin First Ig 98.5 2.3E-07 5E-12 50.2 4.0 32 110-141 57-89 (91)
214 cd05749 Ig2_Tyro3_like Second 98.5 5.8E-07 1.3E-11 47.5 5.1 34 109-144 47-80 (81)
215 cd05753 Ig2_FcgammaR_like Seco 98.5 2.8E-07 6E-12 49.0 3.5 38 109-146 46-83 (83)
216 cd00099 IgV Immunoglobulin var 98.4 1.5E-06 3.1E-11 48.2 6.6 65 21-85 2-91 (105)
217 cd05775 Ig_SLAM-CD84_like_N N- 98.4 7.3E-07 1.6E-11 48.8 5.1 73 24-96 3-96 (97)
218 cd05897 Ig2_IL1R2_like Second 98.4 4.4E-07 9.6E-12 49.3 4.1 37 110-146 54-93 (95)
219 cd05713 Ig_MOG_like Immunoglob 98.4 3.8E-06 8.3E-11 46.2 7.9 35 61-96 65-99 (100)
220 cd05883 Ig2_Necl-2 Second immu 98.4 7.4E-06 1.6E-10 43.2 8.4 70 28-97 2-80 (82)
221 cd05902 Ig_Neurocan Immunoglob 98.4 3.4E-06 7.3E-11 47.2 7.3 36 110-146 71-106 (110)
222 cd05878 Ig_Aggrecan_like Immun 98.4 6.9E-06 1.5E-10 46.0 8.6 73 24-97 1-107 (110)
223 cd05752 Ig1_FcgammaR_like Frst 98.4 2.1E-06 4.4E-11 45.1 5.8 34 109-146 45-78 (78)
224 cd05846 Ig1_MRC-OX-2_like Firs 98.4 9.3E-06 2E-10 44.4 8.6 72 25-96 1-96 (97)
225 cd05718 Ig1_PVR_like First imm 98.4 7.3E-06 1.6E-10 44.8 8.2 71 26-96 1-97 (98)
226 cd05755 Ig2_ICAM-1_like Second 98.4 6.4E-06 1.4E-10 45.1 7.7 72 10-84 3-85 (100)
227 cd05899 IgV_TCR_beta Immunoglo 98.4 4.5E-06 9.9E-11 46.7 7.5 64 19-83 7-94 (110)
228 PHA02987 Ig domain OX-2-like p 98.4 4E-05 8.6E-10 46.3 11.5 82 19-100 24-125 (189)
229 cd04980 IgV_L_kappa Immunoglob 98.4 5.9E-06 1.3E-10 45.9 7.7 65 19-83 9-93 (106)
230 cd05775 Ig_SLAM-CD84_like_N N- 98.4 7.9E-07 1.7E-11 48.7 4.0 38 110-147 60-97 (97)
231 cd05729 Ig2_FGFR_like Second i 98.3 9.8E-07 2.1E-11 46.8 4.0 35 111-146 51-85 (85)
232 cd05901 Ig_Versican Immunoglob 98.3 1.3E-05 2.9E-10 45.1 8.2 37 60-97 78-114 (117)
233 cd05888 Ig1_Nectin-4_like Frst 98.3 2E-06 4.4E-11 47.3 5.0 37 110-147 63-100 (100)
234 cd05887 Ig1_Nectin-3_like Firs 98.3 2.5E-06 5.4E-11 46.5 5.1 38 109-147 58-96 (96)
235 cd05888 Ig1_Nectin-4_like Frst 98.3 1.8E-05 4E-10 43.5 8.5 37 60-96 63-99 (100)
236 cd05886 Ig1_Nectin-1_like Firs 98.3 3.1E-05 6.7E-10 42.5 9.3 36 61-96 63-98 (99)
237 cd05754 Ig3_Perlecan_like Thir 98.3 9.4E-07 2E-11 47.1 3.2 35 109-144 50-84 (85)
238 cd05713 Ig_MOG_like Immunoglob 98.3 1.3E-06 2.8E-11 48.0 3.9 35 111-146 65-99 (100)
239 cd05871 Ig_Semaphorin_classIII 98.3 1.7E-06 3.7E-11 46.8 3.9 37 110-147 52-89 (91)
240 cd05896 Ig1_IL1RAPL-1_like Fir 98.3 2.1E-06 4.6E-11 47.1 4.0 38 108-146 67-104 (104)
241 cd05758 Ig5_KIRREL3-like Fifth 98.2 1.8E-06 4E-11 47.3 3.8 32 112-144 65-97 (98)
242 cd05718 Ig1_PVR_like First imm 98.2 3E-06 6.4E-11 46.4 4.6 37 110-147 61-98 (98)
243 cd05887 Ig1_Nectin-3_like Firs 98.2 2.8E-05 6.1E-10 42.4 8.1 37 60-96 59-95 (96)
244 cd05771 IgC_Tapasin_R Tapasin- 98.2 5.3E-05 1.2E-09 44.2 9.6 46 3-50 33-80 (139)
245 PHA02633 hypothetical protein; 98.2 4.1E-06 8.8E-11 41.0 3.9 37 109-146 16-52 (63)
246 cd04982 IgV_TCR_gamma Immunogl 98.2 1.9E-05 4.2E-10 44.6 7.3 64 19-82 7-98 (116)
247 cd05771 IgC_Tapasin_R Tapasin- 98.2 1.5E-05 3.2E-10 46.6 6.6 39 62-101 2-40 (139)
248 cd04984 IgV_L_lambda Immunoglo 98.1 2.4E-05 5.2E-10 42.8 7.0 62 21-82 2-84 (98)
249 cd05741 Ig_CEACAM_D1_like Firs 98.1 4.8E-06 1E-10 45.0 3.8 38 109-146 55-92 (92)
250 cd05727 Ig2_Contactin-2-like S 98.1 3.4E-06 7.3E-11 45.9 2.9 29 109-137 58-86 (96)
251 cd05761 Ig2_Necl-1-4_like Seco 98.1 5.9E-05 1.3E-09 39.9 7.7 59 28-86 2-70 (82)
252 cd05774 Ig_CEACAM_D1 First imm 98.1 8.3E-06 1.8E-10 45.2 4.5 39 108-146 67-105 (105)
253 cd05898 Ig5_KIRREL3 Fifth immu 98.1 6.7E-06 1.5E-10 45.0 3.7 34 110-144 63-97 (98)
254 cd05882 Ig1_Necl-1 First (N-te 98.0 8.9E-06 1.9E-10 44.3 3.9 35 110-146 61-95 (95)
255 cd05846 Ig1_MRC-OX-2_like Firs 98.0 1.4E-05 3E-10 43.7 4.7 39 108-147 58-97 (97)
256 cd07701 Ig1_Necl-3 First (N-te 98.0 1.2E-05 2.5E-10 43.9 4.1 35 110-146 61-95 (95)
257 cd05860 Ig4_SCFR Fourth immuno 98.0 1.5E-05 3.3E-10 43.6 4.1 35 111-146 65-99 (101)
258 cd07705 Ig2_Necl-1 Second immu 98.0 0.00018 4E-09 38.1 8.2 59 28-86 2-71 (83)
259 cd05878 Ig_Aggrecan_like Immun 98.0 1.6E-05 3.4E-10 44.6 4.3 36 110-146 71-106 (110)
260 cd00098 IgC Immunoglobulin Con 98.0 2.7E-05 5.9E-10 42.3 5.0 63 23-85 11-86 (95)
261 cd05889 Ig1_DNAM-1_like First 98.0 8.6E-05 1.9E-09 40.5 6.8 34 60-93 59-92 (96)
262 cd05901 Ig_Versican Immunoglob 98.0 2.2E-05 4.8E-10 44.2 4.6 36 110-146 78-113 (117)
263 smart00410 IG_like Immunoglobu 98.0 2.8E-05 6E-10 40.7 4.7 36 111-147 51-86 (86)
264 smart00409 IG Immunoglobulin. 98.0 2.8E-05 6E-10 40.7 4.7 36 111-147 51-86 (86)
265 cd05717 Ig1_Necl-1-3_like Firs 97.9 2.2E-05 4.9E-10 42.7 4.4 35 110-146 61-95 (95)
266 smart00408 IGc2 Immunoglobulin 97.9 2E-05 4.3E-10 38.8 3.8 27 109-135 37-63 (63)
267 cd07706 IgV_TCR_delta Immunogl 97.9 0.00015 3.4E-09 40.9 7.5 64 19-82 8-93 (116)
268 cd00096 Ig Immunoglobulin doma 97.9 7E-05 1.5E-09 37.4 5.6 56 29-84 2-66 (74)
269 PF13895 Ig_2: Immunoglobulin 97.9 1.3E-05 2.8E-10 41.8 2.5 34 113-146 47-80 (80)
270 cd05716 Ig_pIgR Immunoglobulin 97.9 0.00028 6E-09 38.6 7.7 64 21-84 3-87 (98)
271 cd05884 Ig2_Necl-3 Second immu 97.9 0.00018 4E-09 38.1 6.7 58 28-85 2-70 (83)
272 cd07700 IgV_CD8_beta Immunoglo 97.8 0.0002 4.4E-09 39.9 7.1 62 21-82 2-93 (107)
273 cd05720 Ig_CD8_alpha Immunoglo 97.8 7.4E-05 1.6E-09 41.4 5.3 28 21-48 2-29 (104)
274 cd05873 Ig_Sema4D_like Immunog 97.7 5.6E-05 1.2E-09 40.4 3.4 26 109-134 46-71 (87)
275 cd05889 Ig1_DNAM-1_like First 97.7 0.00012 2.7E-09 39.9 4.7 34 109-143 58-92 (96)
276 PHA03376 BARF1; Provisional 97.7 0.00082 1.8E-08 40.9 8.4 66 19-84 20-110 (221)
277 cd05712 Ig_Siglec_N Immunoglob 97.7 0.00067 1.5E-08 38.5 7.8 65 19-83 8-102 (119)
278 cd05751 Ig1_LILRB1_like First 97.7 8.2E-05 1.8E-09 40.2 3.8 36 111-146 53-90 (91)
279 cd07690 Ig1_CD4 First immunogl 97.7 2.6E-05 5.7E-10 42.4 1.7 26 111-136 65-90 (94)
280 cd07692 Ig_CD3_epsilon Immunog 97.6 0.00063 1.4E-08 34.0 6.1 53 21-82 3-55 (65)
281 cd07698 IgC_MHC_I_alpha3 Class 97.6 0.00093 2E-08 36.2 7.2 72 8-84 2-83 (93)
282 PF00047 ig: Immunoglobulin do 97.6 6.5E-05 1.4E-09 37.5 2.3 18 113-130 47-64 (64)
283 cd05772 IgC_SIRP Signal-regula 97.6 0.00054 1.2E-08 38.4 6.1 78 5-84 2-92 (111)
284 cd07699 IgC_L Immunoglobulin C 97.6 0.00024 5.2E-09 39.1 4.6 76 8-84 1-89 (100)
285 cd05845 Ig2_L1-CAM_like Second 97.5 0.00011 2.4E-09 40.0 2.6 30 108-137 55-85 (95)
286 cd04981 IgV_H Immunoglobulin ( 97.5 0.0022 4.7E-08 36.4 7.9 64 19-82 6-97 (117)
287 PF13927 Ig_3: Immunoglobulin 97.5 0.00012 2.6E-09 37.5 2.5 25 108-132 51-75 (75)
288 PF08205 C2-set_2: CD80-like C 97.5 0.00044 9.5E-09 37.0 4.8 61 25-85 14-85 (89)
289 cd05872 Ig_Sema4B_like Immunog 97.4 0.0003 6.4E-09 37.5 3.9 37 109-146 45-82 (85)
290 smart00407 IGc1 Immunoglobulin 97.4 0.0015 3.3E-08 33.8 6.2 57 28-84 2-71 (75)
291 cd05881 Ig1_Necl-2 First (N-te 97.4 0.00044 9.5E-09 37.7 4.0 33 112-146 63-95 (95)
292 cd05768 IgC_CH4 CH4 domain (fo 97.4 0.00059 1.3E-08 37.7 4.6 31 22-52 13-45 (102)
293 cd05767 IgC_MHC_II_alpha Class 97.3 0.003 6.5E-08 34.3 7.0 71 8-84 1-84 (94)
294 cd05766 IgC_MHC_II_beta Class 97.3 0.0045 9.8E-08 33.6 7.3 62 23-84 12-83 (94)
295 PF11465 Receptor_2B4: Natural 97.3 0.00061 1.3E-08 37.4 3.7 40 108-147 68-107 (108)
296 cd05769 IgC_TCR_beta T cell re 97.3 0.002 4.3E-08 36.4 6.0 78 8-86 2-94 (115)
297 cd05770 IgC_beta2m Class I maj 97.3 0.004 8.7E-08 33.8 6.9 61 23-84 13-83 (93)
298 cd05885 Ig2_Necl-4 Second immu 97.2 0.00072 1.6E-08 35.5 3.7 35 112-146 44-80 (80)
299 PHA02987 Ig domain OX-2-like p 97.2 0.0011 2.3E-08 40.3 4.7 39 108-146 82-121 (189)
300 cd00099 IgV Immunoglobulin var 97.2 0.00029 6.2E-09 38.9 2.1 25 111-135 67-91 (105)
301 cd05714 Ig_CSPGs_LP Immunoglob 97.2 0.0013 2.8E-08 36.5 4.6 73 24-97 1-103 (106)
302 cd04983 IgV_TCR_alpha_like Imm 97.1 0.00062 1.4E-08 37.9 3.2 25 111-135 70-94 (109)
303 smart00406 IGv Immunoglobulin 97.1 0.0024 5.2E-08 33.2 5.0 20 61-80 62-81 (81)
304 cd05900 Ig_Aggrecan Immunoglob 97.0 0.0037 8.1E-08 35.1 5.4 72 24-96 1-108 (112)
305 cd04984 IgV_L_lambda Immunoglo 97.0 0.0012 2.7E-08 36.0 3.4 23 111-133 63-85 (98)
306 cd05759 Ig2_KIRREL3-like Secon 97.0 0.0015 3.2E-08 34.4 3.5 34 113-146 48-82 (82)
307 cd05716 Ig_pIgR Immunoglobulin 97.0 0.00093 2E-08 36.5 2.8 25 110-134 63-87 (98)
308 cd05877 Ig_LP_like Immunoglobu 96.9 0.0028 6.1E-08 35.1 4.6 73 24-97 1-103 (106)
309 cd05902 Ig_Neurocan Immunoglob 96.9 0.0016 3.5E-08 36.5 3.5 37 60-97 71-107 (110)
310 cd04985 IgC_CH1 CH1 domain (fi 96.9 0.0095 2.1E-07 32.4 6.5 27 24-50 15-43 (95)
311 cd05879 Ig_P0 Immunoglobulin ( 96.9 0.0032 7E-08 35.6 4.4 68 19-86 7-105 (116)
312 cd04980 IgV_L_kappa Immunoglob 96.8 0.0013 2.9E-08 36.4 2.8 23 111-133 71-93 (106)
313 cd05719 Ig2_PVR_like Second im 96.8 0.027 5.9E-07 30.7 7.8 62 24-85 14-83 (95)
314 cd05847 IgC_CH2_IgE CH2 domain 96.8 0.0063 1.4E-07 33.1 5.2 61 24-84 13-86 (94)
315 cd07696 IgC_CH3 CH3 domain (th 96.8 0.0074 1.6E-07 32.9 5.4 29 21-49 10-41 (96)
316 KOG3515|consensus 96.8 0.0075 1.6E-07 44.4 6.8 65 20-84 310-384 (741)
317 cd07689 Ig2_VCAM-1 Second immu 96.8 0.014 3.1E-07 31.8 6.2 61 21-82 11-84 (99)
318 cd05899 IgV_TCR_beta Immunoglo 96.8 0.0015 3.3E-08 36.5 2.6 25 110-134 71-95 (110)
319 cd07700 IgV_CD8_beta Immunoglo 96.7 0.0017 3.7E-08 36.1 2.7 22 112-133 73-94 (107)
320 PHA02633 hypothetical protein; 96.6 0.014 2.9E-07 28.9 4.8 40 59-99 16-55 (63)
321 cd05711 Ig_FcalphaRI Immunoglo 96.5 0.0055 1.2E-07 33.3 3.8 35 112-146 56-94 (94)
322 cd04986 IgC_CH2 CH2 domain (se 96.5 0.017 3.7E-07 31.7 5.6 42 8-50 3-47 (99)
323 cd07691 Ig_CD3_gamma_delta Imm 96.5 0.014 2.9E-07 29.6 4.7 50 24-82 5-54 (69)
324 smart00406 IGv Immunoglobulin 96.5 0.0013 2.9E-08 34.2 1.1 21 110-130 61-81 (81)
325 cd07703 Ig2_Nectin-2_like Seco 96.5 0.054 1.2E-06 29.5 7.7 59 27-85 17-83 (95)
326 cd07697 IgC_TCR_gamma T cell r 96.4 0.016 3.5E-07 31.6 5.2 31 22-52 13-45 (96)
327 cd07704 Ig2_Nectin-3-4_like Se 96.4 0.064 1.4E-06 29.3 8.2 65 20-84 11-84 (97)
328 PF07654 C1-set: Immunoglobuli 96.3 0.019 4.2E-07 30.2 5.0 58 24-84 7-77 (83)
329 cd04982 IgV_TCR_gamma Immunogl 96.1 0.0055 1.2E-07 34.5 2.4 24 110-133 76-99 (116)
330 cd07694 Ig2_CD4 Second immunog 96.1 0.014 2.9E-07 31.2 3.5 37 109-146 49-85 (88)
331 cd05715 Ig_P0-like Immunoglobu 96.0 0.018 3.9E-07 32.5 4.2 67 19-85 7-104 (116)
332 cd05880 Ig_EVA1 Immunoglobulin 96.0 0.017 3.7E-07 32.6 4.0 67 19-85 7-103 (115)
333 PF07686 V-set: Immunoglobulin 96.0 0.01 2.2E-07 32.9 3.1 65 19-83 10-101 (114)
334 cd05721 IgV_CTLA-4 Immunoglobu 96.0 0.13 2.8E-06 29.1 7.2 29 20-48 8-39 (115)
335 cd05712 Ig_Siglec_N Immunoglob 96.0 0.01 2.2E-07 33.7 3.0 23 111-133 80-102 (119)
336 cd07706 IgV_TCR_delta Immunogl 95.9 0.0053 1.1E-07 34.6 1.7 23 111-133 72-94 (116)
337 cd00096 Ig Immunoglobulin doma 95.6 0.017 3.6E-07 28.3 2.7 25 110-134 42-66 (74)
338 cd07692 Ig_CD3_epsilon Immunog 95.4 0.043 9.3E-07 27.5 3.6 39 93-132 9-55 (65)
339 PHA03042 CD47-like protein; Pr 95.4 0.13 2.7E-06 33.5 6.4 63 22-86 28-95 (286)
340 PF08204 V-set_CD47: CD47 immu 95.4 0.01 2.2E-07 34.1 1.5 71 23-95 25-118 (130)
341 PF07354 Sp38: Zona-pellucida- 95.4 0.043 9.4E-07 35.3 4.3 47 38-84 11-60 (271)
342 PHA03376 BARF1; Provisional 94.8 0.033 7.2E-07 34.2 2.6 24 111-134 87-110 (221)
343 cd04981 IgV_H Immunoglobulin ( 94.7 0.023 5.1E-07 32.1 1.7 21 112-132 77-97 (117)
344 PHA02982 hypothetical protein; 94.3 0.48 1E-05 29.7 6.7 28 21-48 35-63 (251)
345 cd05883 Ig2_Necl-2 Second immu 94.3 0.12 2.6E-06 27.3 3.7 31 117-147 49-80 (82)
346 PF07354 Sp38: Zona-pellucida- 93.9 0.057 1.2E-06 34.8 2.4 27 108-134 34-60 (271)
347 KOG1480|consensus 93.7 0.061 1.3E-06 39.8 2.5 74 21-94 140-216 (909)
348 KOG1480|consensus 93.6 0.046 9.9E-07 40.4 1.7 37 111-147 183-219 (909)
349 PHA03270 envelope glycoprotein 93.5 1.7 3.6E-05 30.5 8.7 42 7-52 220-264 (466)
350 PF11465 Receptor_2B4: Natural 92.6 0.45 9.7E-06 26.5 4.3 38 59-96 69-106 (108)
351 cd05761 Ig2_Necl-1-4_like Seco 91.6 0.44 9.4E-06 25.0 3.5 17 120-136 54-70 (82)
352 PF08204 V-set_CD47: CD47 immu 91.3 0.24 5.3E-06 28.6 2.4 33 111-145 86-118 (130)
353 PF06328 Lep_receptor_Ig: Ig-l 90.8 1.6 3.4E-05 23.5 7.1 59 21-79 14-80 (89)
354 PF05790 C2-set: Immunoglobuli 90.3 0.67 1.4E-05 24.4 3.4 36 110-146 42-78 (80)
355 PF05790 C2-set: Immunoglobuli 89.7 1.9 4.1E-05 22.7 7.6 38 39-81 26-63 (80)
356 PHA02865 MHC-like TNF binding 88.5 4.6 0.0001 27.6 6.9 35 7-47 202-238 (338)
357 PHA03042 CD47-like protein; Pr 88.0 0.64 1.4E-05 30.4 2.7 22 122-144 81-102 (286)
358 cd05720 Ig_CD8_alpha Immunoglo 87.9 0.32 6.9E-06 26.8 1.2 23 60-82 68-90 (104)
359 PHA02914 Immunoglobulin-like d 85.7 5 0.00011 28.1 6.0 65 19-83 273-368 (500)
360 PHA03052 Hypothetical protein; 85.4 3.4 7.4E-05 20.9 3.9 33 19-51 6-41 (69)
361 KOG4597|consensus 85.4 2.6 5.6E-05 30.1 4.6 75 21-96 207-291 (560)
362 PHA03282 envelope glycoprotein 82.6 3.5 7.5E-05 29.4 4.4 39 108-146 121-160 (540)
363 PHA03283 envelope glycoprotein 78.8 23 0.0005 25.9 8.6 39 59-98 132-170 (542)
364 PF03921 ICAM_N: Intercellular 76.8 9.9 0.00021 20.6 7.4 77 19-101 12-90 (91)
365 KOG4597|consensus 75.2 2.6 5.6E-05 30.1 2.0 33 113-146 259-291 (560)
366 PF01688 Herpes_gI: Alphaherpe 75.2 12 0.00026 22.7 4.6 37 108-145 121-157 (161)
367 COG5475 Uncharacterized small 74.2 4.3 9.3E-05 19.6 2.1 14 124-137 29-42 (60)
368 PHA02914 Immunoglobulin-like d 73.7 29 0.00064 24.6 9.3 77 19-95 20-115 (500)
369 PHA03271 envelope glycoprotein 71.0 22 0.00048 25.3 5.6 41 8-52 247-290 (490)
370 PF15096 G6B: G6B family 66.3 6.1 0.00013 24.5 2.1 16 117-132 80-95 (224)
371 PHA03269 envelope glycoprotein 64.4 18 0.00038 26.3 4.2 43 7-53 328-373 (566)
372 PF02480 Herpes_gE: Alphaherpe 63.8 2.3 4.9E-05 30.2 0.0 37 110-146 88-124 (439)
373 PHA02982 hypothetical protein; 63.5 17 0.00036 23.3 3.6 26 59-84 98-123 (251)
374 PHA03286 envelope glycoprotein 62.2 58 0.0012 23.6 8.5 37 60-96 126-162 (492)
375 PHA03240 envelope glycoprotein 59.7 34 0.00075 21.9 4.5 61 20-80 33-124 (258)
376 PHA03283 envelope glycoprotein 59.6 29 0.00062 25.5 4.6 37 109-146 132-168 (542)
377 PHA03273 envelope glycoprotein 59.0 23 0.00051 25.5 4.0 42 7-52 236-280 (486)
378 PHA03282 envelope glycoprotein 58.4 12 0.00027 26.9 2.7 22 110-131 332-353 (540)
379 PHA03292 envelope glycoprotein 57.4 32 0.00069 24.1 4.4 37 108-145 125-161 (413)
380 PHA03289 envelope glycoprotein 54.4 41 0.00088 23.1 4.4 38 108-146 119-156 (352)
381 PHA03286 envelope glycoprotein 52.9 43 0.00094 24.1 4.5 39 108-146 124-162 (492)
382 PF02480 Herpes_gE: Alphaherpe 49.4 19 0.0004 25.9 2.5 33 97-131 257-289 (439)
383 PF06832 BiPBP_C: Penicillin-B 48.8 41 0.00089 17.8 8.3 54 27-87 31-84 (89)
384 cd05890 Ig2_Nectin-1_like Seco 48.7 46 0.001 18.4 6.5 56 28-83 23-86 (98)
385 PHA02935 Hypothetical protein; 48.7 9.5 0.00021 24.0 0.9 31 116-146 107-137 (349)
386 PHA03189 UL14 tegument protein 47.2 14 0.00031 24.9 1.6 18 117-134 139-156 (348)
387 PHA03290 envelope glycoprotein 46.5 72 0.0016 22.1 4.6 26 109-134 127-152 (357)
388 PF11781 RRN7: RNA polymerase 41.7 14 0.0003 16.1 0.7 10 120-129 20-29 (36)
389 KOG3611|consensus 38.7 36 0.00078 26.4 2.7 24 111-134 612-635 (737)
390 PF09085 Adhes-Ig_like: Adhesi 38.0 38 0.00082 18.7 2.0 41 8-52 3-48 (110)
391 PHA03291 envelope glycoprotein 37.8 1.1E+02 0.0023 21.5 4.5 27 111-137 129-155 (401)
392 PHA03281 envelope glycoprotein 36.2 47 0.001 24.7 2.8 22 110-131 474-495 (642)
393 PHA03290 envelope glycoprotein 33.2 1.7E+02 0.0036 20.5 4.8 36 61-97 129-164 (357)
394 PF13540 RCC1_2: Regulator of 30.2 50 0.0011 13.4 1.7 13 123-135 17-29 (30)
395 PF05955 Herpes_gp2: Equine he 29.4 1.5E+02 0.0032 18.6 4.1 51 32-82 114-177 (226)
396 KOG0613|consensus 28.5 2.2E+02 0.0047 23.9 5.3 23 116-138 398-420 (1205)
397 PF10420 IL12p40_C: Cytokine i 28.4 1E+02 0.0022 16.4 3.5 13 121-133 11-23 (82)
398 PHA03281 envelope glycoprotein 27.2 1.8E+02 0.004 21.9 4.4 37 110-146 297-333 (642)
399 TIGR03853 matur_matur probable 25.3 42 0.00091 17.6 0.9 13 121-133 33-45 (77)
400 PF10572 UPF0556: Uncharacteri 24.7 75 0.0016 19.3 1.9 17 120-136 69-85 (158)
401 PF10430 Ig_Tie2_1: Tie-2 Ig-l 24.0 68 0.0015 17.4 1.5 9 123-131 75-83 (96)
402 PF02494 HYR: HYR domain; Int 22.8 1.1E+02 0.0023 15.8 2.2 21 126-146 61-81 (81)
403 PF10678 DUF2492: Protein of u 21.5 47 0.001 17.5 0.7 13 121-133 35-47 (78)
404 COG5246 PRP11 Splicing factor 21.5 65 0.0014 20.1 1.3 17 117-133 45-61 (222)
405 KOG0200|consensus 21.4 98 0.0021 23.4 2.5 22 111-132 13-34 (609)
406 PF13220 DUF4028: Protein of u 20.1 83 0.0018 15.1 1.3 17 121-137 8-24 (65)
No 1
>KOG3513|consensus
Probab=99.88 E-value=7.3e-21 Score=136.13 Aligned_cols=140 Identities=31% Similarity=0.515 Sum_probs=112.7
Q ss_pred eeEEeCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCc----eeeeccceEEEeecCCCCeEEEE
Q psy7616 3 QLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGE----KSLEGFSITLEKVDRHQAGVYQC 78 (147)
Q Consensus 3 ~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~g~y~C 78 (147)
..++.+|.+...+. ...+..|+++.|.|.+.|.|.|.+.|.+++.++.... .....+.|+|.+++..|+|.|.|
T Consensus 326 v~v~a~P~w~~~~~--d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~~g~L~is~v~~~dsg~YQC 403 (1051)
T KOG3513|consen 326 VTVYAPPYWLQKPQ--DTEADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAERDPRYKIDDGTLIISNVQESDSGVYQC 403 (1051)
T ss_pred EEEecCchhhcccc--eeEecCCCCeEEEEEecCCCCCceEEeeCCeecCccCCCcceEEeCCEEEEEecccccCeEEEe
Confidence 34567888887766 5688999999999999999999999999998885332 34577899999999999999999
Q ss_pred EeecCCCCceEEeEEEEEeee-ecCCCCcc-------------------------------------------ccCCceE
Q psy7616 79 TATNGVGDPVTVDMTLEVLCK-ILPSGEKS-------------------------------------------LEGFSIT 114 (147)
Q Consensus 79 ~~~~~~~~~~~~~~~l~v~~~-~~~~~~~~-------------------------------------------~~~~~~~ 114 (147)
.+.|..|.. -+.+.|.|... |.+...+. .+.++|.
T Consensus 404 ~A~Nk~G~i-~anA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~~~~r~~i~edGtL~ 482 (1051)
T KOG3513|consen 404 IAENKYGTI-YANAELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGEKLLQSGRIRILEDGTLE 482 (1051)
T ss_pred eeecccceE-eeeeEEEEEccCCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEEcCCcccccCceEEECCCCcEE
Confidence 999988874 56666666543 44432222 3456778
Q ss_pred EeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616 115 LEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 146 (147)
Q Consensus 115 l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V 146 (147)
+.+++++|+|.|+|.|+|..|.+ +.+..|.|
T Consensus 483 I~n~t~~DaG~YtC~A~N~~G~a-~~~~~L~V 513 (1051)
T KOG3513|consen 483 ISNVTRSDAGKYTCVAENKLGKA-ESTGNLIV 513 (1051)
T ss_pred ecccCcccCcEEEEEEEcccCcc-ceEEEEEE
Confidence 89999999999999999999998 77888876
No 2
>KOG3513|consensus
Probab=99.85 E-value=4.2e-20 Score=132.31 Aligned_cols=138 Identities=30% Similarity=0.468 Sum_probs=110.1
Q ss_pred eCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCC-CCCCce-eeeccceEEEeecCCCCeEEEEEeecCC
Q psy7616 7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSS-LPSGEK-SLEGFSITLEKVDRHQAGVYQCTATNGV 84 (147)
Q Consensus 7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~-~~~~~~-~~~~~~l~~~~~~~~~~g~y~C~~~~~~ 84 (147)
++|.+....+. +.....|+.+.|.|.+.|.|.|.+.|.|.++. ++.... ...+..|.|.+++..|+|.|.|.+.|..
T Consensus 239 ~~P~i~~~~p~-~~~a~~G~~v~LECfA~G~P~P~i~W~k~~g~~~~~r~~~~~~~~vL~I~nv~~~D~G~Y~C~AeN~~ 317 (1051)
T KOG3513|consen 239 YAPKILVPFPE-TETALKGQSVKLECFALGNPTPQIKWRKVDGKPPPRRATYSNYGKVLKIPNVQYEDAGEYECIAENSR 317 (1051)
T ss_pred cCCccccCCCC-cccccCCCeEEEEEEecCCCCCcEEEEeCCCCCCCcceeeeccccEEEecccCcCCCeEEEEEEeccc
Confidence 56777666554 56888999999999999999999999998884 333222 3356689999999999999999999998
Q ss_pred CCceEEeEEEEEeeeecCCCCc-----------------------------c--------------ccCCceEEeecCCC
Q psy7616 85 GDPVTVDMTLEVLCKILPSGEK-----------------------------S--------------LEGFSITLEKVDRH 121 (147)
Q Consensus 85 ~~~~~~~~~l~v~~~~~~~~~~-----------------------------~--------------~~~~~~~l~~~~~~ 121 (147)
|.. .....+.+..+|.+.... + ...+.|.|.+++..
T Consensus 318 G~~-~~~~~v~v~a~P~w~~~~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~~g~L~is~v~~~ 396 (1051)
T KOG3513|consen 318 GSA-THSGHVTVYAPPYWLQKPQDTEADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAERDPRYKIDDGTLIISNVQES 396 (1051)
T ss_pred ccc-eeeEEEEEecCchhhcccceeEecCCCCeEEEEEecCCCCCceEEeeCCeecCccCCCcceEEeCCEEEEEecccc
Confidence 864 777778887766554322 2 22346788999999
Q ss_pred CCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616 122 QAGVYQCTATNGVGDPVTVDMTLEVL 147 (147)
Q Consensus 122 d~G~Y~C~a~n~~g~~~~~~~~l~V~ 147 (147)
|+|.|.|.|.|.+|.. ..++.|.|+
T Consensus 397 dsg~YQC~A~Nk~G~i-~anA~L~V~ 421 (1051)
T KOG3513|consen 397 DSGVYQCIAENKYGTI-YANAELKVL 421 (1051)
T ss_pred cCeEEEeeeecccceE-eeeeEEEEE
Confidence 9999999999999998 778888885
No 3
>KOG4194|consensus
Probab=99.76 E-value=1.7e-17 Score=113.17 Aligned_cols=137 Identities=28% Similarity=0.398 Sum_probs=101.2
Q ss_pred CCceEEcCCCCceEEeeCCeEEEEEeecCC--CCCceEEEecCCCCCCC------------------ceeeeccceEEEe
Q psy7616 8 PPSIRTSPSNGQLTVRKGGTITLECKASGN--PVPSIIWSKKDSSLPSG------------------EKSLEGFSITLEK 67 (147)
Q Consensus 8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~--~~~~v~w~~~~~~~~~~------------------~~~~~~~~l~~~~ 67 (147)
+|++...|. +.....|.+++++|.+.+. .+.++.|.+++..++.- ........|.+.+
T Consensus 503 kpqI~~qPe--~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~n 580 (873)
T KOG4194|consen 503 KPQIVTQPE--TVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDN 580 (873)
T ss_pred CcceecCch--HhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeee
Confidence 455555555 5577789999999998663 34579999988654321 0112344688999
Q ss_pred ecCCCCeEEEEEeecCCCCceEEeEEEEEeeeecC-----------------------------CCCcc-----------
Q psy7616 68 VDRHQAGVYQCTATNGVGDPVTVDMTLEVLCKILP-----------------------------SGEKS----------- 107 (147)
Q Consensus 68 ~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~~~~-----------------------------~~~~~----------- 107 (147)
+...|.|.|.|.+.|.+|...+..+.++|...|.+ .|.+.
T Consensus 581 Vt~td~grYQCVvtN~FGStysqk~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~eR 660 (873)
T KOG4194|consen 581 VTFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAARER 660 (873)
T ss_pred eecccCceEEEEEecccCcchhheeEEEeeccCccccCcccceeecccceeeeeeccCCCCcceeehhcCCCCCchhhhh
Confidence 99999999999999999888777777777654443 33332
Q ss_pred -----ccCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616 108 -----LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 147 (147)
Q Consensus 108 -----~~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~ 147 (147)
.+.....+.++..+|+|.|+|.|.|..|.. +.+++|.|+
T Consensus 661 Rl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~i-sanAtL~V~ 704 (873)
T KOG4194|consen 661 RLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQI-SANATLTVL 704 (873)
T ss_pred eeeecCCCCEEEEecccccccceeEEeeeccccce-eeceEEEEe
Confidence 222334558999999999999999999998 889999885
No 4
>KOG4194|consensus
Probab=99.75 E-value=4.1e-17 Score=111.40 Aligned_cols=142 Identities=28% Similarity=0.460 Sum_probs=108.5
Q ss_pred eeeEEeCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCC-CCCC----cee-eeccceEEEeecCCCCeE
Q psy7616 2 EQLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSS-LPSG----EKS-LEGFSITLEKVDRHQAGV 75 (147)
Q Consensus 2 ~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~-~~~~----~~~-~~~~~l~~~~~~~~~~g~ 75 (147)
+..++..|.|...|. .+++..|+...+.|-+.|.|.|.+.|.++++. ++.- .+. .+...+.|.+++.+|.|.
T Consensus 606 KltV~~~PsFtktP~--dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~eRRl~Vmpedd~f~Itnvk~eD~Gi 683 (873)
T KOG4194|consen 606 KLTVNQAPSFTKTPE--DLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAARERRLHVMPEDDVFFITNVKIEDQGI 683 (873)
T ss_pred EEEeeccCccccCcc--cceeecccceeeeeeccCCCCcceeehhcCCCCCchhhhheeeecCCCCEEEEecccccccce
Confidence 567888999998887 67999999999999999999999999998876 4421 122 245567889999999999
Q ss_pred EEEEeecCCCCceEEeEEEEEeeeecCCCCcc----cc---------------------------------------CCc
Q psy7616 76 YQCTATNGVGDPVTVDMTLEVLCKILPSGEKS----LE---------------------------------------GFS 112 (147)
Q Consensus 76 y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~----~~---------------------------------------~~~ 112 (147)
|+|.+.+..|+. ++...+.|...|.+..+-. .. .+-
T Consensus 684 YtC~A~n~AG~i-sanAtL~V~e~p~f~~PL~~~~V~~get~vlqC~a~~~~a~pr~~W~k~d~pil~t~rh~f~d~dQl 762 (873)
T KOG4194|consen 684 YTCTAQNVAGQI-SANATLTVLETPSFSIPLEDQLVVVGETLVLQCLAEGAPADPRLEWFKEDKPILITERHTFPDGDQL 762 (873)
T ss_pred eEEeeeccccce-eeceEEEEecCCcccccccceEEEecceEEEEEecCCCCCCccccccCCCCceEEeecccCCCCCeE
Confidence 999999998884 7888888876544332211 11 122
Q ss_pred eEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616 113 ITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 147 (147)
Q Consensus 113 ~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~ 147 (147)
+.+.+...+|+|.|+|...|..|.- .....+.|+
T Consensus 763 lvv~~~~~~daG~yTcem~~~~~~~-~~~i~l~~~ 796 (873)
T KOG4194|consen 763 LVVKENLVEDAGIYTCEMSNTLGTE-RIHICLLVY 796 (873)
T ss_pred EEEEehhhhhcceEEEEEEeeccce-eeEEEEEEe
Confidence 4447778999999999999999866 666666553
No 5
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.72 E-value=3.6e-16 Score=85.82 Aligned_cols=92 Identities=25% Similarity=0.440 Sum_probs=74.5
Q ss_pred CceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCcee-----eeccceEEEeecCCCCeEEEEEeecC
Q psy7616 9 PSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKS-----LEGFSITLEKVDRHQAGVYQCTATNG 83 (147)
Q Consensus 9 p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~g~y~C~~~~~ 83 (147)
|.|...+. .+.+..|+.+.|.|.+.|.|.+.+.|++++..+...... ...+.|.|.++...|+|.|.|.+.|.
T Consensus 1 p~~~~~p~--~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~ 78 (98)
T cd05762 1 PQIIQFPE--DMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENK 78 (98)
T ss_pred CceEECCc--CEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcC
Confidence 44555554 568999999999999999999999999999887543321 13457999999999999999999999
Q ss_pred CCCceEEeEEEEEeeeecCC
Q psy7616 84 VGDPVTVDMTLEVLCKILPS 103 (147)
Q Consensus 84 ~~~~~~~~~~l~v~~~~~~~ 103 (147)
.|.. .+.+.|.|...|..+
T Consensus 79 ~G~~-~~~~~l~V~~~P~pP 97 (98)
T cd05762 79 LGSR-QAQVNLTVVDKPDPP 97 (98)
T ss_pred CCce-eEEEEEEEecCCCCC
Confidence 9986 778888888777543
No 6
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.70 E-value=1.1e-15 Score=82.36 Aligned_cols=86 Identities=30% Similarity=0.522 Sum_probs=69.5
Q ss_pred CCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCcee-eeccceEEEeecCCCCeEEEEEeecCCCC
Q psy7616 8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKS-LEGFSITLEKVDRHQAGVYQCTATNGVGD 86 (147)
Q Consensus 8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~g~y~C~~~~~~~~ 86 (147)
||.+...+. ...+..|+.+.|.|.+.|.|.|.+.|++++..+...... ..+..|.|.++...|+|.|.|.+.|..|.
T Consensus 1 ~p~i~~~~~--~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 78 (88)
T cd05851 1 PADINVKFK--DTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEISMSGAVLKIFNIQPEDEGTYECEAENIKGK 78 (88)
T ss_pred CCceEEccc--cEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEecCCCEEEECcCChhhCEEEEEEEEcCCCc
Confidence 577777766 458899999999999999999999999998777544332 24557999999999999999999999887
Q ss_pred ceEEeEEEEE
Q psy7616 87 PVTVDMTLEV 96 (147)
Q Consensus 87 ~~~~~~~l~v 96 (147)
. ...+.|.|
T Consensus 79 ~-~~~~~l~V 87 (88)
T cd05851 79 D-KHQARVYV 87 (88)
T ss_pred e-EEEEEEEE
Confidence 5 66665544
No 7
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.68 E-value=1.5e-15 Score=99.96 Aligned_cols=116 Identities=20% Similarity=0.293 Sum_probs=80.4
Q ss_pred EEeeCCeEEEEEee-----cCCCCCceEEEecCCCCCCCceeeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEE
Q psy7616 21 TVRKGGTITLECKA-----SGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLE 95 (147)
Q Consensus 21 ~~~~g~~~~l~C~~-----~~~~~~~v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~ 95 (147)
....|+++.+.|.. .+.|.+.+.|++++...........+..+.|.++...|+|.|.|.+.|..+.. ...+.|.
T Consensus 37 ~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~~~~~~~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~~-~~s~~L~ 115 (326)
T PHA02785 37 MELENEPVILPCPQINTLSSGYNILDILWEKRGADNDRIIPIDNGSNMLILNPTQSDSGIYICITKNETYCD-MMSLNLT 115 (326)
T ss_pred hhhcCCCEEEECCCccccccCCCCceEEEEECCCccceEEEccCCceEEEcccCcccCeEEEEEEECCCcce-EEEEEEE
Confidence 45579999999986 57778899999987543221112234457788999999999999999976543 4444444
Q ss_pred Eeee------------------------------------ecCCCCcc----------ccCCceEEeecCCCCCeEEEEE
Q psy7616 96 VLCK------------------------------------ILPSGEKS----------LEGFSITLEKVDRHQAGVYQCT 129 (147)
Q Consensus 96 v~~~------------------------------------~~~~~~~~----------~~~~~~~l~~~~~~d~G~Y~C~ 129 (147)
|... |.+.|.+. ..+..|.+.+++.+|+|.|+|.
T Consensus 116 V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~~~~~r~~~~~~~~L~i~~v~~~d~G~Y~C~ 195 (326)
T PHA02785 116 IVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRRLRNKRLKQRTPGIITIEDVRKNDAGYYTCV 195 (326)
T ss_pred EEecCCCccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCCccCCcceEecCCCeEEEeecChhhCeEEEEE
Confidence 3211 11222211 1234688899999999999999
Q ss_pred eecCCCCC
Q psy7616 130 ATNGVGDP 137 (147)
Q Consensus 130 a~n~~g~~ 137 (147)
|.|..|..
T Consensus 196 ~~n~~g~~ 203 (326)
T PHA02785 196 LKYIYGDK 203 (326)
T ss_pred EEeccCCE
Confidence 99998865
No 8
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.68 E-value=1e-15 Score=95.61 Aligned_cols=128 Identities=17% Similarity=0.289 Sum_probs=85.4
Q ss_pred ceEEeeCCeEEEEEeecCC-----------CCCceEEEecCCCC---CC-----------CceeeeccceEEEeecCCCC
Q psy7616 19 QLTVRKGGTITLECKASGN-----------PVPSIIWSKKDSSL---PS-----------GEKSLEGFSITLEKVDRHQA 73 (147)
Q Consensus 19 ~~~~~~g~~~~l~C~~~~~-----------~~~~v~w~~~~~~~---~~-----------~~~~~~~~~l~~~~~~~~~~ 73 (147)
.+.+..|+++.|.|.+.+. ..+.+.|++++... .. .........|.|.+++..|+
T Consensus 31 ~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~Ds 110 (227)
T PHA02826 31 PVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINIDE 110 (227)
T ss_pred eEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHHC
Confidence 4578899999999997553 34589999986421 00 00011245899999999999
Q ss_pred eEEEEEeecCCCCceEEeEEEEEee----------------------------eecCCCCcc-------------ccCCc
Q psy7616 74 GVYQCTATNGVGDPVTVDMTLEVLC----------------------------KILPSGEKS-------------LEGFS 112 (147)
Q Consensus 74 g~y~C~~~~~~~~~~~~~~~l~v~~----------------------------~~~~~~~~~-------------~~~~~ 112 (147)
|.|.|.+.+..+.. ...+.|.|.. .|.+.|.++ ..+..
T Consensus 111 G~Y~C~a~N~~~~~-~~~i~L~V~~~~~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~r~~~~~~~~~ 189 (227)
T PHA02826 111 GIYICTISSGNICE-ESTIRLTFDSGTINYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTDRIQLRNNNST 189 (227)
T ss_pred EEEEEEEEECCcce-EEEEEEEEecCCccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCCCEEEeCCCCE
Confidence 99999999866542 3333333321 133455444 12346
Q ss_pred eEEeecCCCCCeEEEEEeecCC-CCC--cCeeeEEEEC
Q psy7616 113 ITLEKVDRHQAGVYQCTATNGV-GDP--VTVDMTLEVL 147 (147)
Q Consensus 113 ~~l~~~~~~d~G~Y~C~a~n~~-g~~--~~~~~~l~V~ 147 (147)
|.+.+++.+|+|.|+|.|+... |.. .+..+.|+|+
T Consensus 190 L~I~~V~~~DsG~YtC~a~~~~~g~~y~~t~~~~~~~~ 227 (227)
T PHA02826 190 LVIKSATHDDSGIYTCNLRFNKNSNNYNITKEYKVTII 227 (227)
T ss_pred EEECcCCHHhCEEEEEEEEEeECCEEEEEEEEEEEEEC
Confidence 8889999999999999999876 333 3455555553
No 9
>KOG4222|consensus
Probab=99.66 E-value=1.2e-15 Score=109.85 Aligned_cols=140 Identities=34% Similarity=0.529 Sum_probs=102.0
Q ss_pred EeCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCC-----CceeeeccceEEEee-----cCCCCeE
Q psy7616 6 MVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPS-----GEKSLEGFSITLEKV-----DRHQAGV 75 (147)
Q Consensus 6 ~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~-----~~~~~~~~~l~~~~~-----~~~~~g~ 75 (147)
..+|.++.-|. .+.+..+++++|.|.+.|.|.|.+.|+++|..... .........|.+..+ ...|.|.
T Consensus 29 d~~p~iiehp~--d~vvs~~~patlnc~asG~ppPti~w~k~G~~~~~~e~~shR~~lp~gsLf~l~~ahg~~a~~d~G~ 106 (1281)
T KOG4222|consen 29 DQPPRIIEHPH--DLVVSKGEPATLNCKASGDPPPTIEWYKDGENVFKGEPGSHRFLLPDGSLFLLRLAHGKKAGHDHGV 106 (1281)
T ss_pred cCCCceEecch--hhhccCCCCceeecCCCCCCCCceecccCCcccCCCCCCCcceecCCccEEEEecccCCcccCCCce
Confidence 35777777776 55889999999999999999999999999954321 122333344433322 2348899
Q ss_pred EEEEeecCCCCceEEeEEEEEeee-------------------------------ecCCCCcc--------------ccC
Q psy7616 76 YQCTATNGVGDPVTVDMTLEVLCK-------------------------------ILPSGEKS--------------LEG 110 (147)
Q Consensus 76 y~C~~~~~~~~~~~~~~~l~v~~~-------------------------------~~~~~~~~--------------~~~ 110 (147)
|.|.+.|..+...+....|.+... |.+.|.++ ..|
T Consensus 107 y~cvasn~~g~avSr~a~L~vavlrddfrv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~lisg 186 (1281)
T KOG4222|consen 107 YSCVASNRLGEAVSRGASLIVAVLRDDFRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIALISG 186 (1281)
T ss_pred eEeeecCccceeeecCceEEEEEechhcccCcccccccccceeEEeccCCCCCCCCcceeecCCCccccccceeEEEecC
Confidence 999999988776555555555431 22233332 567
Q ss_pred CceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616 111 FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 147 (147)
Q Consensus 111 ~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~ 147 (147)
+.+.+.++++.|+|.|.|.+.|.+|...+..++|.|+
T Consensus 187 G~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~ 223 (1281)
T KOG4222|consen 187 GNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQ 223 (1281)
T ss_pred CcEEEeccccCCCceeeeeecccccccccccceeeec
Confidence 7888899999999999999999999998888888875
No 10
>KOG4221|consensus
Probab=99.66 E-value=5.1e-15 Score=107.36 Aligned_cols=137 Identities=25% Similarity=0.445 Sum_probs=99.9
Q ss_pred CCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCc--eeeeccceEEEeecCCCCeEEEEEeecCCC
Q psy7616 8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGE--KSLEGFSITLEKVDRHQAGVYQCTATNGVG 85 (147)
Q Consensus 8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~ 85 (147)
.+.|...+. ..++..|+.+.|.|.+.+.+.+.+.|.++..+++... ....++.|.|..+...|.|.|+|.+.+...
T Consensus 140 ~~~f~~~~~--~~t~~~g~ta~f~c~vn~e~~p~i~w~kn~~pl~~~~r~i~lpsG~L~I~~~qp~d~g~yrc~vt~g~~ 217 (1381)
T KOG4221|consen 140 LADFALQPE--STTLLYGQTALFSCEVNAEPVPTIMWLKNDQPLPLDSRVIVLPSGALEISGLQPSDTGEYRCVVTGGAS 217 (1381)
T ss_pred cCccccCcc--ceeEecCCcEEEEEEEcCccCceeEEecccccccCCCcEEEcCCCcEEecccccCCCceEEEEEecCCc
Confidence 345544554 4489999999999999998888999999998775433 345788899999999999999999998654
Q ss_pred CceEEeEEEEEee-----------------------------------eecCCCCcc-------------ccCCceEEee
Q psy7616 86 DPVTVDMTLEVLC-----------------------------------KILPSGEKS-------------LEGFSITLEK 117 (147)
Q Consensus 86 ~~~~~~~~l~v~~-----------------------------------~~~~~~~~~-------------~~~~~~~l~~ 117 (147)
...+....+++.. .|.+.|..+ ..+.++.+.+
T Consensus 218 ~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds~rivl~g~~slliS~ 297 (1381)
T KOG4221|consen 218 QRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDSYRIVLVGGSSLLISN 297 (1381)
T ss_pred CCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEecCCCCCceEEeeCCeeeeecceEEEEecccceEEec
Confidence 4444444444442 244455544 2355667799
Q ss_pred cCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616 118 VDRHQAGVYQCTATNGVGDPVTVDMTLEVL 147 (147)
Q Consensus 118 ~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~ 147 (147)
++..|+|.|+|.|.|..... ...+.|+|+
T Consensus 298 a~~~dSg~YtC~Atn~~D~i-dasaev~V~ 326 (1381)
T KOG4221|consen 298 ATDDDSGKYTCRATNTNDSI-DASAEVTVL 326 (1381)
T ss_pred cccccCceEEEEecCCCccc-ccceEEEEE
Confidence 99999999999999965444 445555553
No 11
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.62 E-value=1.5e-14 Score=78.27 Aligned_cols=87 Identities=29% Similarity=0.473 Sum_probs=67.8
Q ss_pred CceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCcee--eeccceEEEeecCCCCeEEEEEeecCCCC
Q psy7616 9 PSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKS--LEGFSITLEKVDRHQAGVYQCTATNGVGD 86 (147)
Q Consensus 9 p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~g~y~C~~~~~~~~ 86 (147)
|.+.......+..+..|+.++|.|.+.+. .|.+.|++++..+...... .....|.|.+++..|+|.|.|.+.|..|.
T Consensus 2 p~~~~~~~~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~ 80 (91)
T cd05740 2 PVINSNNSVGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPPRLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSN 80 (91)
T ss_pred CEeecccccCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCCCEEEeCCCCEEEECcCChhhCEEEEEEEEcCCCC
Confidence 44544444446688999999999999998 8999999998776543221 23457999999999999999999999888
Q ss_pred ceEEeEEEEE
Q psy7616 87 PVTVDMTLEV 96 (147)
Q Consensus 87 ~~~~~~~l~v 96 (147)
..+..+.|.|
T Consensus 81 ~~S~~~~L~V 90 (91)
T cd05740 81 MTSDPYILNV 90 (91)
T ss_pred EEeeeEEEEe
Confidence 6666766655
No 12
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.61 E-value=1.6e-14 Score=79.06 Aligned_cols=89 Identities=35% Similarity=0.674 Sum_probs=69.8
Q ss_pred CCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCC-cee---eeccceEEEeecCCCCeEEEEEeecC
Q psy7616 8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSG-EKS---LEGFSITLEKVDRHQAGVYQCTATNG 83 (147)
Q Consensus 8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~-~~~---~~~~~l~~~~~~~~~~g~y~C~~~~~ 83 (147)
||.+...+...+..+..|+.+.|.|.+.|.|.+.+.|++++..+... ... .....|.|.++...|.|.|.|.+.|.
T Consensus 1 pp~i~~~~~~~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~ 80 (95)
T cd05730 1 PPTIRARQSEVNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAENK 80 (95)
T ss_pred CCccccCCcccceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEeCCCCEEEECCCChhhCEEEEEEEEcC
Confidence 56666655544567899999999999999999999999998776543 111 23446999999999999999999999
Q ss_pred CCCceEEeEEEEEe
Q psy7616 84 VGDPVTVDMTLEVL 97 (147)
Q Consensus 84 ~~~~~~~~~~l~v~ 97 (147)
.|.. ...+.|.|.
T Consensus 81 ~G~~-~~~~~L~V~ 93 (95)
T cd05730 81 AGEQ-EAEIHLKVF 93 (95)
T ss_pred CCeE-EEEEEEEEE
Confidence 8875 677777664
No 13
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.60 E-value=6.7e-14 Score=75.47 Aligned_cols=85 Identities=36% Similarity=0.583 Sum_probs=66.0
Q ss_pred CceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCc-eeeeccceEEEeecCCCCeEEEEEeecCCCCc
Q psy7616 9 PSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGE-KSLEGFSITLEKVDRHQAGVYQCTATNGVGDP 87 (147)
Q Consensus 9 p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~ 87 (147)
|.+...+. ...+..|+.+.|.|.+.+.|.|.+.|++++..+.... .......|.|.+++.+|+|.|.|.+.|..|..
T Consensus 2 ~~~~~~p~--~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~ 79 (88)
T cd04968 2 SIIVVFPK--DTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEISMSGAVLKIPNIQFEDEGTYECEAENIKGKD 79 (88)
T ss_pred CcEEECCC--ceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEEEeCCEEEECCCCcccCEEEEEEEEECCCcE
Confidence 44445554 5578899999999999999999999999877654322 22356689999999999999999999988875
Q ss_pred eEEeEEEEE
Q psy7616 88 VTVDMTLEV 96 (147)
Q Consensus 88 ~~~~~~l~v 96 (147)
.....|.|
T Consensus 80 -~~~~~l~V 87 (88)
T cd04968 80 -THQGRIYV 87 (88)
T ss_pred -EEEEEEEE
Confidence 55555544
No 14
>KOG4221|consensus
Probab=99.59 E-value=8.4e-15 Score=106.28 Aligned_cols=125 Identities=25% Similarity=0.458 Sum_probs=96.1
Q ss_pred ceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCce---eeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEE
Q psy7616 19 QLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK---SLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLE 95 (147)
Q Consensus 19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~ 95 (147)
...+..|+++.|.|.+.+.+.|.|.|.+++..+.-+.. ....+.|.+.+++..|+|.|+|++.|.... ..+...+.
T Consensus 246 ~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D~-idasaev~ 324 (1381)
T KOG4221|consen 246 NAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDSYRIVLVGGSSLLISNATDDDSGKYTCRATNTNDS-IDASAEVT 324 (1381)
T ss_pred ccccccCCcEEEEEEecCCCCCceEEeeCCeeeeecceEEEEecccceEEeccccccCceEEEEecCCCcc-cccceEEE
Confidence 55888999999999999999999999999887743322 335678999999999999999999984433 25556667
Q ss_pred EeeeecCCCCcc-----------------------------------------ccCCceEEeecCCCCCeEEEEEeecCC
Q psy7616 96 VLCKILPSGEKS-----------------------------------------LEGFSITLEKVDRHQAGVYQCTATNGV 134 (147)
Q Consensus 96 v~~~~~~~~~~~-----------------------------------------~~~~~~~l~~~~~~d~G~Y~C~a~n~~ 134 (147)
|..+|.+...+. ..++.+.+..+-..|.|.|.|.+.|..
T Consensus 325 V~a~P~~~~~p~~l~A~e~~die~ec~~~g~p~p~v~w~kNgd~~ipsdy~ki~~~~~lrIlgi~~sdeg~yQcvaen~~ 404 (1381)
T KOG4221|consen 325 VLAPPGFTKAPTTLVAHESMDIEFECPVSGKPIPTVRWYKNGDRIIPSDYFKIVGGGNLRILGIVKSDEGFYQCVAENDA 404 (1381)
T ss_pred EEcCCCCCCCCcceeeeeccceeEeCCCCCCCcceEEEEecCcccCcccceEecCCCCcEEEEEecccchhhhhhhccCc
Confidence 766655543322 234447778888999999999999999
Q ss_pred CCCcCeeeEEE
Q psy7616 135 GDPVTVDMTLE 145 (147)
Q Consensus 135 g~~~~~~~~l~ 145 (147)
|.+ ...++|.
T Consensus 405 G~a-~a~a~l~ 414 (1381)
T KOG4221|consen 405 GSA-QAAAQLE 414 (1381)
T ss_pred ccc-cchhhhe
Confidence 988 5555553
No 15
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.59 E-value=3.9e-14 Score=77.96 Aligned_cols=78 Identities=21% Similarity=0.328 Sum_probs=63.3
Q ss_pred ceEEeeCCeEEEEEeecC-CCCCceEEEecCCCCCCCcee---e-------eccceEEEeecCCCCeEEEEEeecCCCCc
Q psy7616 19 QLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEKS---L-------EGFSITLEKVDRHQAGVYQCTATNGVGDP 87 (147)
Q Consensus 19 ~~~~~~g~~~~l~C~~~~-~~~~~v~w~~~~~~~~~~~~~---~-------~~~~l~~~~~~~~~~g~y~C~~~~~~~~~ 87 (147)
.+.+..|+++.|.|.+.+ .|.|.+.|++++..+...... . ....|.|..+...|+|.|+|.+.|..|..
T Consensus 12 ~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~~ 91 (101)
T cd04975 12 TIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDASK 91 (101)
T ss_pred eEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCccE
Confidence 568889999999999999 889999999999887633221 1 13679999999999999999999998874
Q ss_pred eEEeEEEEEe
Q psy7616 88 VTVDMTLEVL 97 (147)
Q Consensus 88 ~~~~~~l~v~ 97 (147)
+..+.|.|.
T Consensus 92 -~~t~~L~V~ 100 (101)
T cd04975 92 -SLTFELYVN 100 (101)
T ss_pred -EEEEEEEEE
Confidence 666666653
No 16
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.59 E-value=3.3e-14 Score=77.26 Aligned_cols=85 Identities=26% Similarity=0.541 Sum_probs=67.0
Q ss_pred eCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCce--ee---eccceEEEeecCCCCeEEEEEee
Q psy7616 7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK--SL---EGFSITLEKVDRHQAGVYQCTAT 81 (147)
Q Consensus 7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~--~~---~~~~l~~~~~~~~~~g~y~C~~~ 81 (147)
.||.+...|. ...+..|+.+.|.|.+.+.|.+.+.|++++..+..... .. ....|.|.++...|+|.|.|.+.
T Consensus 2 ~~~~~~~~p~--~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~ 79 (92)
T cd05747 2 LPATILTKPR--SLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVE 79 (92)
T ss_pred CCCcccccCc--cEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEE
Confidence 3677776665 66899999999999999999999999999877643322 11 23478999999999999999999
Q ss_pred cCCCCceEEeEEE
Q psy7616 82 NGVGDPVTVDMTL 94 (147)
Q Consensus 82 ~~~~~~~~~~~~l 94 (147)
|..|.. +..+.|
T Consensus 80 N~~G~~-~~~~~l 91 (92)
T cd05747 80 NSEGKQ-EAQFTL 91 (92)
T ss_pred cCCCCE-eEEEEe
Confidence 988874 555443
No 17
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.59 E-value=1.4e-14 Score=75.57 Aligned_cols=71 Identities=32% Similarity=0.606 Sum_probs=57.7
Q ss_pred eCCeEEEEEeecCCCCCceEEEecCCCCCCCce--eeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEE
Q psy7616 24 KGGTITLECKASGNPVPSIIWSKKDSSLPSGEK--SLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLE 95 (147)
Q Consensus 24 ~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~ 95 (147)
+|+.+.|.|.+.|.|.|.+.|++++..+..... ......|.|.++...|+|.|.|.+.|..|.. +..+.|.
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~-~~~~~L~ 73 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSGTLRISRVALHDQGQYECQAVNIVGSQ-RTVAQLT 73 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEccCCeEEEeeCCHHhCEEEEEEEEeCCCce-eEEEEEe
Confidence 478999999999999999999999877654322 3345689999999999999999999998875 5555553
No 18
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.57 E-value=1e-13 Score=76.02 Aligned_cols=85 Identities=35% Similarity=0.581 Sum_probs=62.8
Q ss_pred CCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCc------e-e---eeccceEEEeecCCCCeEEE
Q psy7616 8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGE------K-S---LEGFSITLEKVDRHQAGVYQ 77 (147)
Q Consensus 8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~------~-~---~~~~~l~~~~~~~~~~g~y~ 77 (147)
+|.+...+.. .....|+.+.|.|.+.|.|.|.+.|++++..+.... . . ...+.|.|.+++..|+|.|.
T Consensus 2 ~p~i~~~~~~--~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~ 79 (97)
T cd05869 2 KPKITYVENQ--TAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYL 79 (97)
T ss_pred CceEEEccCc--eEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEE
Confidence 5666665543 245558999999999999999999999876553211 0 0 11246899999999999999
Q ss_pred EEeecCCCCceEEeEEEE
Q psy7616 78 CTATNGVGDPVTVDMTLE 95 (147)
Q Consensus 78 C~~~~~~~~~~~~~~~l~ 95 (147)
|.+.|..|.. +..+.|.
T Consensus 80 C~A~N~~G~~-~~~~~l~ 96 (97)
T cd05869 80 CTASNTIGQD-SQSMYLE 96 (97)
T ss_pred EEEecCCCCe-eEEEEEE
Confidence 9999998886 6665554
No 19
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.57 E-value=4.3e-14 Score=74.11 Aligned_cols=71 Identities=28% Similarity=0.575 Sum_probs=57.3
Q ss_pred CCeEEEEEeecCCCCCceEEEecCCCCCCC----ceeeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEEE
Q psy7616 25 GGTITLECKASGNPVPSIIWSKKDSSLPSG----EKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96 (147)
Q Consensus 25 g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v 96 (147)
|+.+.|.|.+.+.|.|.+.|++++..+... ........|.|.+++..|+|.|.|.+.|..|.. ...+.|.|
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~V 75 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEARNRHGNL-LANAHVHV 75 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEeeCCEEEECCCChhhCEEEEEEEECCCCeE-EEEEEEEE
Confidence 678999999999999999999998776432 122345679999999999999999999988874 66666654
No 20
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.56 E-value=3.4e-14 Score=73.78 Aligned_cols=70 Identities=27% Similarity=0.541 Sum_probs=56.2
Q ss_pred CCeEEEEEeecCCCCCceEEEecCCCCCCCce--eeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEE
Q psy7616 25 GGTITLECKASGNPVPSIIWSKKDSSLPSGEK--SLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLE 95 (147)
Q Consensus 25 g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~ 95 (147)
|+.+.|.|.+.+.|.|.+.|++++..+....+ ....+.|.|.+++..|.|.|.|.+.|..|.. .....|.
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~-~~~~~l~ 72 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDDGSLEILNITKLDEGSYTCFAENNRGKA-NSTGVLS 72 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcCCCEEEECcCChhHCEEEEEEEECCCCce-eEEEEEE
Confidence 67899999999999999999998876643322 2355689999999999999999999998875 5555443
No 21
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.56 E-value=1.1e-13 Score=74.55 Aligned_cols=77 Identities=21% Similarity=0.332 Sum_probs=61.8
Q ss_pred CCeEEEEEeecCCCCCceEEEecCCCCCCC--ceee--------eccceEEEeecCCCCeEEEEEeecCCCCceEEeEEE
Q psy7616 25 GGTITLECKASGNPVPSIIWSKKDSSLPSG--EKSL--------EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTL 94 (147)
Q Consensus 25 g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~--~~~~--------~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l 94 (147)
|+.+.|.|.+.+.|.+.+.|++++..+... .... ..+.|.|.++...|+|.|.|.+.|..|.. +..+.|
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~-~~~~~L 79 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGED-RGIIQL 79 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcc-eEEEEE
Confidence 688999999999999999999998766432 1111 11468899999999999999999999986 788888
Q ss_pred EEeeeecC
Q psy7616 95 EVLCKILP 102 (147)
Q Consensus 95 ~v~~~~~~ 102 (147)
.|..+|+.
T Consensus 80 ~V~~~P~~ 87 (88)
T cd05735 80 TVQEPPDP 87 (88)
T ss_pred EEeCCCCC
Confidence 88877754
No 22
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.56 E-value=1e-13 Score=75.34 Aligned_cols=76 Identities=30% Similarity=0.543 Sum_probs=60.5
Q ss_pred ceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCce--ee----eccceEEEeecCCCCeEEEEEeecCCCCceEEeE
Q psy7616 19 QLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK--SL----EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDM 92 (147)
Q Consensus 19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~--~~----~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~ 92 (147)
.+.+..|+.+.|.|.+.+.|.|.+.|++++..+..... .. ....|.|.++...|+|.|.|.+.|..|.. +..+
T Consensus 10 ~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~ 88 (92)
T cd05737 10 VVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGE-TVDV 88 (92)
T ss_pred eEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcc-eEEE
Confidence 56889999999999999999999999999877753321 11 12368999999999999999999988875 5555
Q ss_pred EEE
Q psy7616 93 TLE 95 (147)
Q Consensus 93 ~l~ 95 (147)
.+.
T Consensus 89 ~v~ 91 (92)
T cd05737 89 TVS 91 (92)
T ss_pred EEe
Confidence 443
No 23
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.55 E-value=7.4e-14 Score=74.84 Aligned_cols=76 Identities=29% Similarity=0.543 Sum_probs=61.4
Q ss_pred ceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCc--e-ee---eccceEEEeecCCCCeEEEEEeecCCCCceEEeE
Q psy7616 19 QLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGE--K-SL---EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDM 92 (147)
Q Consensus 19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~--~-~~---~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~ 92 (147)
.+.+..|+.+.|.|.+.|.|.|.+.|++++..+.... . .. ....|.|..+...|+|.|.|.+.|..|.. +..+
T Consensus 4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~-~~~~ 82 (86)
T cd05894 4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGED-HASL 82 (86)
T ss_pred EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcE-EEEE
Confidence 4578899999999999999999999999998775321 1 11 23579999999999999999999999875 5655
Q ss_pred EEE
Q psy7616 93 TLE 95 (147)
Q Consensus 93 ~l~ 95 (147)
.|.
T Consensus 83 ~l~ 85 (86)
T cd05894 83 FVK 85 (86)
T ss_pred EEE
Confidence 554
No 24
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.55 E-value=2.4e-13 Score=74.91 Aligned_cols=87 Identities=40% Similarity=0.709 Sum_probs=62.7
Q ss_pred CCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCC-----ce--eeeccceEEEe-----ecCCCCeE
Q psy7616 8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSG-----EK--SLEGFSITLEK-----VDRHQAGV 75 (147)
Q Consensus 8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~-----~~--~~~~~~l~~~~-----~~~~~~g~ 75 (147)
||.+...+. ...+..|+.+.|.|.+.+.|.|.+.|++++..+... .. ......+.+.. +...|+|.
T Consensus 1 ~P~i~~~p~--~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~ 78 (100)
T cd07693 1 PPRIVEHPS--DLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGV 78 (100)
T ss_pred CCeEEecCc--eeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEE
Confidence 577777765 568899999999999999999999999998776431 11 11222222222 26789999
Q ss_pred EEEEeecCCCCceEEeEEEEE
Q psy7616 76 YQCTATNGVGDPVTVDMTLEV 96 (147)
Q Consensus 76 y~C~~~~~~~~~~~~~~~l~v 96 (147)
|.|.+.|..|...+..+.|.|
T Consensus 79 Y~C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 79 YVCVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred EEEEEEccccceecceEEEEe
Confidence 999999998885566665554
No 25
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.54 E-value=1.1e-13 Score=74.12 Aligned_cols=76 Identities=32% Similarity=0.546 Sum_probs=62.3
Q ss_pred ceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCc-eeeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEE
Q psy7616 19 QLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGE-KSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLE 95 (147)
Q Consensus 19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~ 95 (147)
...+..|+.+.|.|.+.+.|.|.+.|++++..+.... .......|.|.++...|+|.|.|.+.|..|.. ...+.|.
T Consensus 8 ~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~ 84 (85)
T cd05728 8 DTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVEAGDLRITKLSLSDSGMYQCVAENKHGTI-YASAELA 84 (85)
T ss_pred ccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEEeCCEEEEeeCCHHHCEEEEEEEECCCCeE-EEEEEEE
Confidence 4588899999999999999999999999988775432 23356679999999999999999999988874 5555553
No 26
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.53 E-value=5.5e-14 Score=72.26 Aligned_cols=59 Identities=24% Similarity=0.394 Sum_probs=50.3
Q ss_pred EEEEeecCCCCCceEEEecCCCCCCCceeeeccceEEEeecCCCCeEEEEEeecCCCCc
Q psy7616 29 TLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDP 87 (147)
Q Consensus 29 ~l~C~~~~~~~~~v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~ 87 (147)
.|.|.+.|.|.|.+.|++++.++...........|.|.++...|+|.|+|.+.|..|..
T Consensus 2 ~~~c~v~G~P~P~v~W~k~g~~l~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~ 60 (70)
T cd05864 2 KIPVKYYGYPPPEVKWYKNGQLIVLNHTFKRGVHLTIYEVTEKDAGNYTVVLTNPITKE 60 (70)
T ss_pred EEEeEEEEeCCCEEEEEECCEECCCCCEEccCCEEEECcCCHHHCEEEEEEEEECCCce
Confidence 68999999999999999999888654444445579999999999999999999998765
No 27
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.53 E-value=2e-13 Score=76.39 Aligned_cols=94 Identities=21% Similarity=0.428 Sum_probs=67.6
Q ss_pred EeCCceEEcCCCCceEE--eeCCeEEEEEeecCCCCCceEEEecCCCCCCC-cee---------eeccceEEEeec-CCC
Q psy7616 6 MVPPSIRTSPSNGQLTV--RKGGTITLECKASGNPVPSIIWSKKDSSLPSG-EKS---------LEGFSITLEKVD-RHQ 72 (147)
Q Consensus 6 ~~~p~~~~~~~~~~~~~--~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~-~~~---------~~~~~l~~~~~~-~~~ 72 (147)
.++|.+...+....... ..|..+.|.|.+.|.|.+.+.|++++..+... ... ...+.|.|.++. ..|
T Consensus 2 ~~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D 81 (109)
T cd05773 2 RFAPDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALD 81 (109)
T ss_pred ccccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCC
Confidence 45777766655322211 24578999999999999999999998776421 111 013468888887 589
Q ss_pred CeEEEEEeecCCCCceEEeEEEEEeeee
Q psy7616 73 AGVYQCTATNGVGDPVTVDMTLEVLCKI 100 (147)
Q Consensus 73 ~g~y~C~~~~~~~~~~~~~~~l~v~~~~ 100 (147)
.|.|.|.+.|..|.. ...+.|.+..+|
T Consensus 82 ~G~Y~C~A~N~~G~~-~~~i~L~~~~~p 108 (109)
T cd05773 82 YALFTCTAHNSLGED-SLDIQLVSTSRP 108 (109)
T ss_pred CEEEEEEEEeCCccC-cEEEEEEecCCC
Confidence 999999999999886 777777776655
No 28
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.52 E-value=3.8e-13 Score=73.32 Aligned_cols=83 Identities=25% Similarity=0.513 Sum_probs=59.7
Q ss_pred CceEEcCCCCceEEe---eCCeEEEEEeecCCCCCceEEEecCCCCCCCc---eeeeccceEEEeec-CCCCeEEEEEee
Q psy7616 9 PSIRTSPSNGQLTVR---KGGTITLECKASGNPVPSIIWSKKDSSLPSGE---KSLEGFSITLEKVD-RHQAGVYQCTAT 81 (147)
Q Consensus 9 p~~~~~~~~~~~~~~---~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~---~~~~~~~l~~~~~~-~~~~g~y~C~~~ 81 (147)
|.|...|. .+.+. .|+.+.|.|.+.|.|.|.+.|++++..+.... .....+.|.|.++. ..|+|.|.|.+.
T Consensus 2 P~f~~~p~--~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~ 79 (94)
T cd05848 2 PVFVQEPD--DAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLIDGNLIISNPSEVKDSGRYQCLAT 79 (94)
T ss_pred CeeEECCC--cEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEeeCCeEEEccCCccCcCEEEEEEEE
Confidence 45555554 22332 46899999999999999999999988774321 22345678888774 689999999999
Q ss_pred cCCCCceEEeEE
Q psy7616 82 NGVGDPVTVDMT 93 (147)
Q Consensus 82 ~~~~~~~~~~~~ 93 (147)
|..|...+..+.
T Consensus 80 N~~G~~~S~~~~ 91 (94)
T cd05848 80 NSIGSILSREAL 91 (94)
T ss_pred cCCCeEEeccEE
Confidence 998875444433
No 29
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.52 E-value=4.9e-13 Score=73.01 Aligned_cols=78 Identities=17% Similarity=0.398 Sum_probs=58.4
Q ss_pred ceEEeeCCeEEEEEeecCCCC-CceEEEe-cCCCCCC-Cce--eee----ccceEEEeecCCCCeEEEEEeecCCCCceE
Q psy7616 19 QLTVRKGGTITLECKASGNPV-PSIIWSK-KDSSLPS-GEK--SLE----GFSITLEKVDRHQAGVYQCTATNGVGDPVT 89 (147)
Q Consensus 19 ~~~~~~g~~~~l~C~~~~~~~-~~v~w~~-~~~~~~~-~~~--~~~----~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~ 89 (147)
...+..|+.+.|.|.+.+.|. |.+.|++ ++..+.. ... ... .+.|.|.+++..|+|.|+|.+.|..+....
T Consensus 9 ~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~~~ 88 (96)
T cd05865 9 QGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEGESE 88 (96)
T ss_pred ccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCCcEE
Confidence 447889999999999999884 6999998 5655433 211 111 257999999999999999999998744446
Q ss_pred EeEEEEE
Q psy7616 90 VDMTLEV 96 (147)
Q Consensus 90 ~~~~l~v 96 (147)
+.+.|.+
T Consensus 89 ~s~~l~v 95 (96)
T cd05865 89 ATVNVKI 95 (96)
T ss_pred EEEEEEE
Confidence 6666554
No 30
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.52 E-value=2.5e-13 Score=74.86 Aligned_cols=76 Identities=16% Similarity=0.218 Sum_probs=61.7
Q ss_pred eEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCcee-----------eeccceEEEeecCCCCeEEEEEeecCCCCce
Q psy7616 20 LTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKS-----------LEGFSITLEKVDRHQAGVYQCTATNGVGDPV 88 (147)
Q Consensus 20 ~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~-----------~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~ 88 (147)
..+..|+.+.|.|.+.|.|.|.+.|++++.++..+... ...+.|.|.++...|+|.|+|.+.|..+..
T Consensus 13 ~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~- 91 (101)
T cd05859 13 EFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK- 91 (101)
T ss_pred EEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE-
Confidence 46778899999999999999999999999887643321 123579999999999999999999998774
Q ss_pred EEeEEEEE
Q psy7616 89 TVDMTLEV 96 (147)
Q Consensus 89 ~~~~~l~v 96 (147)
+..+.+.|
T Consensus 92 ~~t~~l~V 99 (101)
T cd05859 92 SYTFALQI 99 (101)
T ss_pred EEEEEEEE
Confidence 66666654
No 31
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.52 E-value=1.4e-13 Score=72.06 Aligned_cols=71 Identities=34% Similarity=0.605 Sum_probs=56.3
Q ss_pred CCeEEEEEeecCCCCCceEEEecCCCCCCC----ceeeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEEE
Q psy7616 25 GGTITLECKASGNPVPSIIWSKKDSSLPSG----EKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96 (147)
Q Consensus 25 g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v 96 (147)
|+++.|.|.+.|.|.|.+.|++++.++... ........|.+.+++..|.|.|.|.+.|..|.. .+.+.|.|
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~-~~~~~l~v 75 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASNEYGYL-LANAFVNV 75 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEecCCEEEECCCCHhhCEEEEEEEEcCCCEE-EEEEEEEe
Confidence 678899999999999999999998876421 112234578889999999999999999998875 66665554
No 32
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.52 E-value=3.3e-13 Score=73.05 Aligned_cols=76 Identities=25% Similarity=0.525 Sum_probs=60.2
Q ss_pred ceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCce-----eeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEE
Q psy7616 19 QLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK-----SLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMT 93 (147)
Q Consensus 19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~ 93 (147)
...+..|+.+.|.|.+.|.|.|.+.|++++..+..... ......|.|.++...|.|.|.|.+.|..|.. ...+.
T Consensus 9 ~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~-~~~~~ 87 (90)
T cd04972 9 ATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQA-NVSVQ 87 (90)
T ss_pred CEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCce-eEEEE
Confidence 44688999999999999999999999999877643221 1123478999999999999999999998875 55554
Q ss_pred EE
Q psy7616 94 LE 95 (147)
Q Consensus 94 l~ 95 (147)
|.
T Consensus 88 L~ 89 (90)
T cd04972 88 VT 89 (90)
T ss_pred Ee
Confidence 43
No 33
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.51 E-value=4.8e-13 Score=72.67 Aligned_cols=70 Identities=27% Similarity=0.535 Sum_probs=54.2
Q ss_pred CCeEEEEEeecCCCCCceEEEecCCCCCC--CceeeeccceEEEeec-CCCCeEEEEEeecCCCCceEEeEEE
Q psy7616 25 GGTITLECKASGNPVPSIIWSKKDSSLPS--GEKSLEGFSITLEKVD-RHQAGVYQCTATNGVGDPVTVDMTL 94 (147)
Q Consensus 25 g~~~~l~C~~~~~~~~~v~w~~~~~~~~~--~~~~~~~~~l~~~~~~-~~~~g~y~C~~~~~~~~~~~~~~~l 94 (147)
++.+.|.|.+.|.|.|.+.|++++..+.. ......++.|.|.++. ..|+|.|.|.+.|..|...+..+.|
T Consensus 19 ~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l 91 (93)
T cd05849 19 EGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSMVGGNLVINNPDKYKDAGRYVCIVSNIYGKVRSREATL 91 (93)
T ss_pred CCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEEECCEEEECcCCcCCCCEEEEEEEEeCcceEEEccEEE
Confidence 44799999999999999999999877642 2223345678888875 5899999999999988765555444
No 34
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.51 E-value=8.2e-14 Score=70.85 Aligned_cols=65 Identities=22% Similarity=0.380 Sum_probs=52.7
Q ss_pred EEEEEeecCCCCCceEEEecCCCCCCCceeeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEEE
Q psy7616 28 ITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96 (147)
Q Consensus 28 ~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v 96 (147)
+.|.|.+.|.|.|.+.|++++..+... .....|.|.++..+|+|.|+|.+.|..|.. +..+.+.+
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~---~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~-~~~~~~~l 65 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLISGK---HSQHSLQIKDVTEASAGTYTLVLWNSAAGL-EKRISLEL 65 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEECccc---CCcCEEEECCCCHHHCEEEEEEEEECCccE-EEEEEEEE
Confidence 368999999999999999999877532 235689999999999999999999988864 55555544
No 35
>KOG4222|consensus
Probab=99.51 E-value=1.6e-13 Score=99.34 Aligned_cols=137 Identities=27% Similarity=0.449 Sum_probs=102.8
Q ss_pred eCCceEEcCCCCceEEeeCCeEEEEEee-cCCCCCceEEEecCCCCCCC----ceeeeccceEEEeecCCCCeEEEEEee
Q psy7616 7 VPPSIRTSPSNGQLTVRKGGTITLECKA-SGNPVPSIIWSKKDSSLPSG----EKSLEGFSITLEKVDRHQAGVYQCTAT 81 (147)
Q Consensus 7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~v~w~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~g~y~C~~~ 81 (147)
.+..|.+.+. .+.+..|+.++|+|.- .+.+-+.+.|.+++.++... ......+.|+|.++...|.|.|.|.+.
T Consensus 130 lrddfrv~pr--d~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~lisgG~LlIsnvrksD~GtY~CVat 207 (1281)
T KOG4222|consen 130 LRDDFRVSPR--DVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIALISGGNLLISNVRKSDEGTYACVAT 207 (1281)
T ss_pred echhcccCcc--cccccccceeEEeccCCCCCCCCcceeecCCCccccccceeEEEecCCcEEEeccccCCCceeeeeec
Confidence 3455555555 4678889999999974 56677899999999988622 223567789999999999999999999
Q ss_pred cCCCCceEEeEEEEEeeeecCCCCcc-----------------------------------------ccCCceEEeecCC
Q psy7616 82 NGVGDPVTVDMTLEVLCKILPSGEKS-----------------------------------------LEGFSITLEKVDR 120 (147)
Q Consensus 82 ~~~~~~~~~~~~l~v~~~~~~~~~~~-----------------------------------------~~~~~~~l~~~~~ 120 (147)
|..+..-+....+++..+|.+...+. ....++.+.++..
T Consensus 208 NmvG~ReS~~A~lsv~e~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~~~~~P~~ry~i~~d~qtl~i~r~tp 287 (1281)
T KOG4222|consen 208 NMVGERESIPARLSVQEKPWFWKRPKDLAVLVGAAAEFDCRVGGDPQPTVRWKKDDPSLPRSRYSILDDTQTLRIDRVTP 287 (1281)
T ss_pred ccccccccccceeeeccCCccccccccceeecccccccccccCCCCCCceeeeccCCCCCccceeeeeccccccccccCC
Confidence 98888656677788877665543332 1113444577888
Q ss_pred CCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616 121 HQAGVYQCTATNGVGDPVTVDMTLEV 146 (147)
Q Consensus 121 ~d~G~Y~C~a~n~~g~~~~~~~~l~V 146 (147)
.|.|.|.|.+.|.+|.- +....|+|
T Consensus 288 ~deg~y~C~a~n~vG~l-~asa~ltV 312 (1281)
T KOG4222|consen 288 TDEGTYVCPAENLVGGL-EASATLTV 312 (1281)
T ss_pred Ccccceeeecccccccc-ccccceEE
Confidence 99999999999999877 66666665
No 36
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.51 E-value=5e-13 Score=71.73 Aligned_cols=76 Identities=28% Similarity=0.563 Sum_probs=59.8
Q ss_pred ceEEeeCCeEEEEEee-cCCCCCceEEEecCCCCCCC-c--eeeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEE
Q psy7616 19 QLTVRKGGTITLECKA-SGNPVPSIIWSKKDSSLPSG-E--KSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTL 94 (147)
Q Consensus 19 ~~~~~~g~~~~l~C~~-~~~~~~~v~w~~~~~~~~~~-~--~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l 94 (147)
...+..|+++.|.|.+ .+.|.+.+.|++++..+... . .....+.|.|.+++..|+|.|.|.+.|..|...+..+.+
T Consensus 5 ~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~l 84 (86)
T cd05724 5 DTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGERESAAARL 84 (86)
T ss_pred cEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEccCCEEEEeECCcccCEEEEEEEEeccCceeeeeEEE
Confidence 5678899999999997 67888999999998766432 1 122356799999999999999999999888754444444
No 37
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.51 E-value=2.3e-13 Score=71.33 Aligned_cols=71 Identities=30% Similarity=0.541 Sum_probs=57.1
Q ss_pred CCeEEEEEeecCCCCCceEEEecCCCCCCCc----eeeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEEE
Q psy7616 25 GGTITLECKASGNPVPSIIWSKKDSSLPSGE----KSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96 (147)
Q Consensus 25 g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v 96 (147)
|+.+.|.|.+.+.|.|.+.|++++..+.... .......|.|.+++..|+|.|.|.+.|..|.. .+.+.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~-~~~~~l~V 75 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYL-LANAFVHV 75 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcceEEccCCEEEECCCChhhCEEEEEEEEccCCeE-EEeEEEEE
Confidence 6789999999999999999999987764322 23345679999999999999999999988774 66665554
No 38
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.50 E-value=1.5e-13 Score=74.41 Aligned_cols=84 Identities=37% Similarity=0.735 Sum_probs=65.4
Q ss_pred CceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCcee-----eeccceEEEeecCCCCeEEEEEeecC
Q psy7616 9 PSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKS-----LEGFSITLEKVDRHQAGVYQCTATNG 83 (147)
Q Consensus 9 p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~g~y~C~~~~~ 83 (147)
|.|...+. .+.+..|+++.|.|.+.+.|.+.+.|++++..+...... .....|.|.++...|+|.|.|.+.+.
T Consensus 1 P~~~~~~~--~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~ 78 (90)
T PF07679_consen 1 PVFTKKPK--DVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNS 78 (90)
T ss_dssp EEEEEESS--EEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEET
T ss_pred CEEEEecC--CEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEEC
Confidence 45555554 678999999999999998889999999998777543221 13557999999999999999999998
Q ss_pred CCCceEEeEEEE
Q psy7616 84 VGDPVTVDMTLE 95 (147)
Q Consensus 84 ~~~~~~~~~~l~ 95 (147)
.+.. +..+.|.
T Consensus 79 ~g~~-~~~~~l~ 89 (90)
T PF07679_consen 79 SGEA-TASVNLT 89 (90)
T ss_dssp TEEE-EEEEEEE
T ss_pred CCEE-EEEEEEE
Confidence 6654 5555554
No 39
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.50 E-value=2e-13 Score=71.00 Aligned_cols=70 Identities=30% Similarity=0.527 Sum_probs=56.2
Q ss_pred CCeEEEEEeecCCCCCceEEEecCCCCCCCc--eeeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEE
Q psy7616 25 GGTITLECKASGNPVPSIIWSKKDSSLPSGE--KSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLE 95 (147)
Q Consensus 25 g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~ 95 (147)
|+.+.|.|.+.+.|.+.+.|++++..+.... .......|.|.+++..|+|.|.|.+.|..|.. ...+.|.
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~ 72 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPDGSLEILNVTKSDEGKYTCFAENFFGKA-NSTGSLS 72 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECCCCeEEEccCChhHCEEEEEEEECCCCce-EEEEEEE
Confidence 6789999999999999999999987764332 23345679999999999999999999998875 5555543
No 40
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.50 E-value=1.8e-12 Score=85.52 Aligned_cols=65 Identities=29% Similarity=0.416 Sum_probs=47.6
Q ss_pred EEeeCCeEEEEEee-----cCCCCCceEEEecCCCCCCCce-eeeccceEEEeecCCCCeEEEEEeecCCCC
Q psy7616 21 TVRKGGTITLECKA-----SGNPVPSIIWSKKDSSLPSGEK-SLEGFSITLEKVDRHQAGVYQCTATNGVGD 86 (147)
Q Consensus 21 ~~~~g~~~~l~C~~-----~~~~~~~v~w~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~ 86 (147)
.+..|+...+.|.. .+.+.+.+.|+++. .+..... ....+.|.|.+++..|.|.|+|.+.+..+.
T Consensus 132 ~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~-~~~~~r~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~ 202 (326)
T PHA02785 132 IVNERSTGEMVCPNINAFIASNVNADIIWSGHR-RLRNKRLKQRTPGIITIEDVRKNDAGYYTCVLKYIYGD 202 (326)
T ss_pred eecccCcEEEECCChhhcccCCCCceEEEccCC-ccCCcceEecCCCeEEEeecChhhCeEEEEEEEeccCC
Confidence 56688899999962 35578899998754 2322221 223567999999999999999999886554
No 41
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.49 E-value=4e-13 Score=71.94 Aligned_cols=75 Identities=25% Similarity=0.519 Sum_probs=59.0
Q ss_pred eEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCcee------eeccceEEEeecCCCCeEEEEEeecCCCCceEEeEE
Q psy7616 20 LTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKS------LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMT 93 (147)
Q Consensus 20 ~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~ 93 (147)
+.+..|+.+.|.|.+.+.|.|.+.|++++..+...... .....|.|.++...|+|.|.|.+.|..|.. ...+.
T Consensus 4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~-~~~~~ 82 (85)
T cd05857 4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSI-NHTYH 82 (85)
T ss_pred EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEE-EEEEE
Confidence 35778999999999999999999999998876533221 123468888999999999999999998874 66655
Q ss_pred EE
Q psy7616 94 LE 95 (147)
Q Consensus 94 l~ 95 (147)
|.
T Consensus 83 l~ 84 (85)
T cd05857 83 LD 84 (85)
T ss_pred EE
Confidence 54
No 42
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.49 E-value=7.4e-13 Score=72.53 Aligned_cols=84 Identities=33% Similarity=0.599 Sum_probs=62.9
Q ss_pred CCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCc-----e--e---eeccceEEEeecCCCCeEEE
Q psy7616 8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGE-----K--S---LEGFSITLEKVDRHQAGVYQ 77 (147)
Q Consensus 8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~-----~--~---~~~~~l~~~~~~~~~~g~y~ 77 (147)
+|.+.. +. +..+..|+.+.|.|.+.+.|.|.+.|++++..+.... . . .....|.|.+++..|+|.|.
T Consensus 2 ~P~i~~-~~--~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 78 (96)
T cd05732 2 QPKITY-LE--NQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYD 78 (96)
T ss_pred Ccccee-cC--ceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeE
Confidence 566643 22 4478899999999999999999999999875553211 1 1 12347899999999999999
Q ss_pred EEeecCCCCceEEeEEEE
Q psy7616 78 CTATNGVGDPVTVDMTLE 95 (147)
Q Consensus 78 C~~~~~~~~~~~~~~~l~ 95 (147)
|.+.|..|.. +..+.|.
T Consensus 79 C~a~N~~G~~-~~s~~l~ 95 (96)
T cd05732 79 CEASNRIGGD-QQSMYLE 95 (96)
T ss_pred EEEEeCCCCc-EEEEEEe
Confidence 9999998885 5555543
No 43
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.49 E-value=3.1e-13 Score=69.90 Aligned_cols=68 Identities=31% Similarity=0.571 Sum_probs=54.2
Q ss_pred EEEEEeecCCCCCceEEEecCCCCCCCce--eeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEEE
Q psy7616 28 ITLECKASGNPVPSIIWSKKDSSLPSGEK--SLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96 (147)
Q Consensus 28 ~~l~C~~~~~~~~~v~w~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v 96 (147)
+.|.|.+.|.|.|.+.|++++..+..... ......|.|.+++..|+|.|.|.+.|..|.. +..+.|.|
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V 70 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSPNRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSA-RHHYTVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCCCceeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeE-EEEEEEEE
Confidence 36899999999999999999877654322 2345689999999999999999999998874 66665544
No 44
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.49 E-value=1.1e-12 Score=72.11 Aligned_cols=84 Identities=30% Similarity=0.564 Sum_probs=61.8
Q ss_pred eCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEec--CCCCCC------Cce-ee---eccceEEEeecCCCCe
Q psy7616 7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKK--DSSLPS------GEK-SL---EGFSITLEKVDRHQAG 74 (147)
Q Consensus 7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~--~~~~~~------~~~-~~---~~~~l~~~~~~~~~~g 74 (147)
++|++.. +. +..+..|+.++|.|.+.|.|.|.+.|++. +..+.. ... .. ....|.|.+++..|+|
T Consensus 1 ~~p~i~~-~~--~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G 77 (98)
T cd05870 1 VQPHIIQ-LK--NETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSG 77 (98)
T ss_pred CCCEEEe-ec--cEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCE
Confidence 3577654 33 56889999999999999999999999994 322211 111 11 2347999999999999
Q ss_pred EEEEEeecCCCCceEEeEEE
Q psy7616 75 VYQCTATNGVGDPVTVDMTL 94 (147)
Q Consensus 75 ~y~C~~~~~~~~~~~~~~~l 94 (147)
.|.|.+.|..|.. ...+.|
T Consensus 78 ~Y~C~A~N~~G~~-~~~~~l 96 (98)
T cd05870 78 RYDCEAASRIGGH-QKSMYL 96 (98)
T ss_pred EEEEEEeccCCcc-eeEEEE
Confidence 9999999998875 555544
No 45
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.49 E-value=5.2e-13 Score=69.05 Aligned_cols=68 Identities=25% Similarity=0.588 Sum_probs=53.4
Q ss_pred eEEEEEeecCCCCCceEEEecCCCCCCCc--eeeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEE
Q psy7616 27 TITLECKASGNPVPSIIWSKKDSSLPSGE--KSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLE 95 (147)
Q Consensus 27 ~~~l~C~~~~~~~~~v~w~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~ 95 (147)
++.|.|.+.|.|.|.+.|++++..+.... .......+.+.++...|+|.|.|.+.|..|.. ...+.|.
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~-~~~~~L~ 70 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNV-QASAQLI 70 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEecCCEEEEcCCcccCEEEEEEEEcCCCEE-EEEEEEE
Confidence 36899999999999999999987764332 22345568888999999999999999988874 5555543
No 46
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.48 E-value=2.9e-13 Score=70.55 Aligned_cols=67 Identities=25% Similarity=0.589 Sum_probs=51.9
Q ss_pred EEEEEeecCCCCCceEEEecCCCCCCC-ce--ee-e-c--cceEEEeecCCCCeEEEEEeecCCCCceEEeEEEE
Q psy7616 28 ITLECKASGNPVPSIIWSKKDSSLPSG-EK--SL-E-G--FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLE 95 (147)
Q Consensus 28 ~~l~C~~~~~~~~~v~w~~~~~~~~~~-~~--~~-~-~--~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~ 95 (147)
+.|.|.+.|.|.|.+.|++++..+... .+ .. . . ..|.|.++...|+|.|+|.+.|..|.. ...+.|.
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~-~~~a~L~ 74 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVA-TCHARLD 74 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeE-EEEEEEe
Confidence 468999999999999999998877522 22 11 1 1 269999999999999999999998875 5555553
No 47
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.48 E-value=1.7e-12 Score=70.95 Aligned_cols=77 Identities=31% Similarity=0.595 Sum_probs=58.3
Q ss_pred ceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCc----eeeeccceEEEee-----cCCCCeEEEEEeecC-CCCce
Q psy7616 19 QLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGE----KSLEGFSITLEKV-----DRHQAGVYQCTATNG-VGDPV 88 (147)
Q Consensus 19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~----~~~~~~~l~~~~~-----~~~~~g~y~C~~~~~-~~~~~ 88 (147)
...+..|+++.|.|.+.+.|.+.+.|++++..+.... .....+.+.+..+ ...|.|.|.|.+.|. .|...
T Consensus 8 ~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~~~ 87 (95)
T cd05722 8 DIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQNDSLGSIV 87 (95)
T ss_pred CeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEECCccCcEE
Confidence 4577889999999999999999999999988775321 1223445666655 578999999999998 88765
Q ss_pred EEeEEEE
Q psy7616 89 TVDMTLE 95 (147)
Q Consensus 89 ~~~~~l~ 95 (147)
+..+.|.
T Consensus 88 s~~~~l~ 94 (95)
T cd05722 88 SRTARLT 94 (95)
T ss_pred EeeeEEe
Confidence 6666554
No 48
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.48 E-value=1.4e-12 Score=68.81 Aligned_cols=74 Identities=20% Similarity=0.506 Sum_probs=57.5
Q ss_pred ceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCce-eeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEE
Q psy7616 19 QLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK-SLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTL 94 (147)
Q Consensus 19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l 94 (147)
.+.+..|+.+.|.|.+.+. .+.+.|++++.++..... ......|.|.++...|+|.|.|.+.+..+.. ...+.+
T Consensus 3 ~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~n~~g~~-~~~~~v 77 (79)
T cd04973 3 SYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRITGEEVQIKDAVPRDSGLYACVTSSPSGSD-TTYFSV 77 (79)
T ss_pred cEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEeCCEEEECCCChhhCEEEEEEEeCCCCcc-cEEEEE
Confidence 4578899999999999885 568999999988864322 2345678999999999999999999877654 433333
No 49
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.47 E-value=2.5e-12 Score=70.11 Aligned_cols=84 Identities=25% Similarity=0.474 Sum_probs=59.1
Q ss_pred CceEEcCCCCceEEee---CCeEEEEEeecCCCCCceEEEecCCCCCCC---ceeeeccceEEEeec-CCCCeEEEEEee
Q psy7616 9 PSIRTSPSNGQLTVRK---GGTITLECKASGNPVPSIIWSKKDSSLPSG---EKSLEGFSITLEKVD-RHQAGVYQCTAT 81 (147)
Q Consensus 9 p~~~~~~~~~~~~~~~---g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~---~~~~~~~~l~~~~~~-~~~~g~y~C~~~ 81 (147)
|.|...|. .....+ |+.+.|.|.+.+.|.+.+.|++++..+... ......+.|.|.++. ..|.|.|.|.+.
T Consensus 2 P~f~~~P~--~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~ 79 (94)
T cd05850 2 PVFEEQPS--SLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLVAGNLVINNPQKARDAGSYQCLAI 79 (94)
T ss_pred CeeEECCC--CEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEECCeEEEccCCccCcCEEEEEEEE
Confidence 44444444 333333 458999999999999999999999877421 122345567787654 589999999999
Q ss_pred cCCCCceEEeEEE
Q psy7616 82 NGVGDPVTVDMTL 94 (147)
Q Consensus 82 ~~~~~~~~~~~~l 94 (147)
|..|...+..+.|
T Consensus 80 N~~G~~~s~~a~l 92 (94)
T cd05850 80 NRCGTVVSREANL 92 (94)
T ss_pred cCcCcEEEEEEEE
Confidence 9988765555444
No 50
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.47 E-value=4.7e-13 Score=69.19 Aligned_cols=68 Identities=25% Similarity=0.439 Sum_probs=53.9
Q ss_pred EEEEEeecCCCCCceEEEecCCCCCCCce-eeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEEE
Q psy7616 28 ITLECKASGNPVPSIIWSKKDSSLPSGEK-SLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96 (147)
Q Consensus 28 ~~l~C~~~~~~~~~v~w~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v 96 (147)
+.|.|.+.|.|.|.+.|++++..+..... ......|.|.++...|+|.|+|.+.|..+.. +..+.+.+
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~-~~~~~~~~ 69 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTKKSGHSLTIKDVTEEDAGNYTVVLTNKQAKL-EKRLTFTL 69 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEEEcCCCEEEECcCCHHHCEEEEEEEEcCCccE-EEEEEEEE
Confidence 36899999999999999999988754432 2345679999999999999999999988764 55555544
No 51
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.46 E-value=1.6e-12 Score=70.30 Aligned_cols=74 Identities=34% Similarity=0.556 Sum_probs=57.4
Q ss_pred CCeEEEEEeecCCCCCceEEEecCCCCC--------CCc--eeeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEE
Q psy7616 25 GGTITLECKASGNPVPSIIWSKKDSSLP--------SGE--KSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTL 94 (147)
Q Consensus 25 g~~~~l~C~~~~~~~~~v~w~~~~~~~~--------~~~--~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l 94 (147)
|+.+.|.|.+.+.|.|.+.|++++.... ... .......|.|.+++..|+|.|.|.+.|..|.. ...+.|
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l 79 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAGSI-LTKAYL 79 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEEEcCCCce-EEEEEE
Confidence 6789999999999999999999876431 111 12235579999999999999999999988875 666777
Q ss_pred EEeee
Q psy7616 95 EVLCK 99 (147)
Q Consensus 95 ~v~~~ 99 (147)
.|...
T Consensus 80 ~V~~~ 84 (90)
T cd05726 80 EVTDV 84 (90)
T ss_pred EEeec
Confidence 76643
No 52
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.46 E-value=1.1e-12 Score=69.75 Aligned_cols=75 Identities=27% Similarity=0.616 Sum_probs=58.3
Q ss_pred eEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCcee---eeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEE
Q psy7616 20 LTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKS---LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLE 95 (147)
Q Consensus 20 ~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~ 95 (147)
+....|+.+.|.|.+.+.|.|.+.|++++..+...... .....|.|.++...|+|.|.|.+.|..|.. ...+.+.
T Consensus 4 ~~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~-~~~~~v~ 81 (82)
T cd05856 4 IARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEI-NATYKVD 81 (82)
T ss_pred eeccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccceecCceEEEEEccCChhhCEEEEEEEEcCCccE-EEEEEEe
Confidence 35667999999999999899999999998876432221 223578899999999999999999988764 5555443
No 53
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.46 E-value=9.2e-13 Score=69.61 Aligned_cols=72 Identities=24% Similarity=0.436 Sum_probs=55.2
Q ss_pred ceEEeeCCeEEEEEeecCCCCC-ceEEEecCCCCCCCceeeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEE
Q psy7616 19 QLTVRKGGTITLECKASGNPVP-SIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMT 93 (147)
Q Consensus 19 ~~~~~~g~~~~l~C~~~~~~~~-~v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~ 93 (147)
.+.+..|+++.|.|.+.|.|.| .+.|.+++.++... .....+.|.+..+ .|.|.|.|.+.|..|...+...+
T Consensus 7 ~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~-~~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s~~a~ 79 (81)
T cd05749 7 DLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDP-PAPSPSVLNVPGL--NETSKFSCEAHNAKGVTTSRTGT 79 (81)
T ss_pred ceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCC-CCCCCCEEEEccc--cCCeEEEEEEEeccCcEEeeeEE
Confidence 5688999999999999999999 69999999877531 1123456777665 47899999999998875444433
No 54
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.46 E-value=9.5e-13 Score=67.71 Aligned_cols=67 Identities=33% Similarity=0.748 Sum_probs=53.3
Q ss_pred EEEEEeecCCCCCceEEEecCCCCCCCce-eeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEE
Q psy7616 28 ITLECKASGNPVPSIIWSKKDSSLPSGEK-SLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLE 95 (147)
Q Consensus 28 ~~l~C~~~~~~~~~v~w~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~ 95 (147)
+.|.|.+.|.|.|.+.|++++..++.... ......|.|.+++.+|+|.|.|.+.|..|.. ...+.|.
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~ 68 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELPKGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGKI-EASASLT 68 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCCCCcEEEeeCCEEEECcCChhHCEEEEEEEEcCCCcE-EEEEEEE
Confidence 36899999999999999999877654332 3356679999999999999999999988875 5555543
No 55
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.45 E-value=1.2e-12 Score=69.93 Aligned_cols=74 Identities=26% Similarity=0.370 Sum_probs=57.6
Q ss_pred CeEEEEEeecCCCCC--ceEEEecCCCCCCCc---e---e---eeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEE
Q psy7616 26 GTITLECKASGNPVP--SIIWSKKDSSLPSGE---K---S---LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTL 94 (147)
Q Consensus 26 ~~~~l~C~~~~~~~~--~v~w~~~~~~~~~~~---~---~---~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l 94 (147)
+++.|.|.+.+.|.| .+.|++++..+.... . . ...+.|.|.+++..|+|.|+|.+.|..+.. ++.+.|
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~-~~~~~L 79 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSA-SASATL 79 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCE-EEEEEE
Confidence 467899999998876 589999987764311 1 1 124579999999999999999999998875 778888
Q ss_pred EEeeee
Q psy7616 95 EVLCKI 100 (147)
Q Consensus 95 ~v~~~~ 100 (147)
.|..+|
T Consensus 80 ~V~~~P 85 (85)
T cd05854 80 VVRGPP 85 (85)
T ss_pred EEECCC
Confidence 877654
No 56
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.45 E-value=1.2e-12 Score=68.27 Aligned_cols=67 Identities=25% Similarity=0.539 Sum_probs=53.1
Q ss_pred EEEEEeecCCCCCceEEEecCCCCCCCcee-----eeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEE
Q psy7616 28 ITLECKASGNPVPSIIWSKKDSSLPSGEKS-----LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLE 95 (147)
Q Consensus 28 ~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~ 95 (147)
+.|.|.+.|.|.|.+.|++++..+...... .....|.|.++...|+|.|.|.+.|..|.. +..+.|.
T Consensus 2 ~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~ 73 (74)
T cd05748 2 VRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEK-SATINVK 73 (74)
T ss_pred EEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccE-EEEEEEE
Confidence 679999999999999999998877433221 124579999999999999999999998874 5555543
No 57
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.45 E-value=1.6e-12 Score=70.37 Aligned_cols=76 Identities=25% Similarity=0.497 Sum_probs=57.5
Q ss_pred ceEEeeCCeEEEEEeecCCCCCceEEEec-CCCCCCCce--eeec---cceEEEeecCCCCeEEEEEeecCCCCceEEeE
Q psy7616 19 QLTVRKGGTITLECKASGNPVPSIIWSKK-DSSLPSGEK--SLEG---FSITLEKVDRHQAGVYQCTATNGVGDPVTVDM 92 (147)
Q Consensus 19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~-~~~~~~~~~--~~~~---~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~ 92 (147)
...+..|+.+.|.|.+.|.|. .+.|+++ +..+....+ .... ..|.|..+..+|+|.|+|.+.|..|......+
T Consensus 9 ~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~i 87 (92)
T cd05866 9 KVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATV 87 (92)
T ss_pred ceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcEEEEEE
Confidence 457889999999999999887 8999985 444332221 2222 27999999999999999999999887645555
Q ss_pred EEE
Q psy7616 93 TLE 95 (147)
Q Consensus 93 ~l~ 95 (147)
.|.
T Consensus 88 ~l~ 90 (92)
T cd05866 88 VLE 90 (92)
T ss_pred EEE
Confidence 554
No 58
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.45 E-value=1.6e-12 Score=70.60 Aligned_cols=76 Identities=33% Similarity=0.570 Sum_probs=59.6
Q ss_pred ceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCce--e--ee--ccceEEEeecCCCCeEEEEEeecCCCCceEEeE
Q psy7616 19 QLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK--S--LE--GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDM 92 (147)
Q Consensus 19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~--~--~~--~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~ 92 (147)
.+.+..|+.+.|.|.+.+.|.|.+.|++++..+..... . .. ...|.|.++...|+|.|.|.+.|..|.. ...+
T Consensus 10 ~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~ 88 (92)
T cd05891 10 VVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGE-TVDV 88 (92)
T ss_pred cEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCce-eeEE
Confidence 66889999999999998889999999999876643221 1 11 1368899999999999999999988875 5555
Q ss_pred EEE
Q psy7616 93 TLE 95 (147)
Q Consensus 93 ~l~ 95 (147)
.+.
T Consensus 89 ~v~ 91 (92)
T cd05891 89 TVS 91 (92)
T ss_pred EEE
Confidence 543
No 59
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.44 E-value=7.9e-13 Score=70.80 Aligned_cols=74 Identities=24% Similarity=0.372 Sum_probs=56.9
Q ss_pred CeEEEEEeecCCCCC--ceEEEecCCCCCCCc------e---eeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEE
Q psy7616 26 GTITLECKASGNPVP--SIIWSKKDSSLPSGE------K---SLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTL 94 (147)
Q Consensus 26 ~~~~l~C~~~~~~~~--~v~w~~~~~~~~~~~------~---~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l 94 (147)
+.+.|.|.+.+.|.+ .+.|++++..+.... . ....+.|.|.+++..|+|.|+|.+.|..+.. +..+.|
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~-~~~~~l 79 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSL-SASADL 79 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcE-EEEEEE
Confidence 467899999988877 568999987764211 0 1234579999999999999999999988774 777778
Q ss_pred EEeeee
Q psy7616 95 EVLCKI 100 (147)
Q Consensus 95 ~v~~~~ 100 (147)
.|..+|
T Consensus 80 ~V~~pP 85 (85)
T cd04970 80 IVRGPP 85 (85)
T ss_pred EEECCC
Confidence 777654
No 60
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.44 E-value=8.3e-13 Score=68.84 Aligned_cols=68 Identities=32% Similarity=0.574 Sum_probs=53.2
Q ss_pred EEEEeecCCCCCceEEEecCCCCCC--Cce--eeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEEE
Q psy7616 29 TLECKASGNPVPSIIWSKKDSSLPS--GEK--SLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96 (147)
Q Consensus 29 ~l~C~~~~~~~~~v~w~~~~~~~~~--~~~--~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v 96 (147)
+|.|.+.|.|.|.+.|++++..+.. ... ....+.|.|.+++..|+|.|.|.+.|..|...+....+.|
T Consensus 2 ~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 2 TMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred EEEEEEeEecCCEEEEEECCEECccCCCCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence 6899999999999999999876642 111 2345578999999999999999999998876556655554
No 61
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.44 E-value=7e-13 Score=69.16 Aligned_cols=67 Identities=28% Similarity=0.582 Sum_probs=51.6
Q ss_pred EEEEEeecCCCCCceEEEecCCCCCCC-ce--eeecc----ceEEEeecCCCCeEEEEEeecCCCCceEEeEEEE
Q psy7616 28 ITLECKASGNPVPSIIWSKKDSSLPSG-EK--SLEGF----SITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLE 95 (147)
Q Consensus 28 ~~l~C~~~~~~~~~v~w~~~~~~~~~~-~~--~~~~~----~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~ 95 (147)
+.|.|.+.|.|.|.+.|++++..+... .+ ..... .|.|..+...|+|.|+|.+.|..|.. +....|.
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~-~~~a~L~ 74 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIV-SCTARLD 74 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEE-EEEEEEe
Confidence 468999999999999999998877532 11 11111 58899999999999999999998875 5555543
No 62
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.43 E-value=1.3e-12 Score=69.42 Aligned_cols=74 Identities=18% Similarity=0.235 Sum_probs=57.7
Q ss_pred CeEEEEEeecCC--CCCceEEEecCCCCCCC--c-e--e----eeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEE
Q psy7616 26 GTITLECKASGN--PVPSIIWSKKDSSLPSG--E-K--S----LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTL 94 (147)
Q Consensus 26 ~~~~l~C~~~~~--~~~~v~w~~~~~~~~~~--~-~--~----~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l 94 (147)
+++.|.|.+... +.+.+.|++++..+... . + . ...+.|.|.+++..|+|.|+|.+.+..+.. ++...|
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~-~a~a~L 79 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKL-SAAADL 79 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCce-EEEEEE
Confidence 367899998663 46789999999887521 1 1 1 134579999999999999999999998875 788888
Q ss_pred EEeeee
Q psy7616 95 EVLCKI 100 (147)
Q Consensus 95 ~v~~~~ 100 (147)
.|..||
T Consensus 80 ~V~~pP 85 (85)
T cd05853 80 IVRGPP 85 (85)
T ss_pred EEecCC
Confidence 887765
No 63
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.43 E-value=2.1e-12 Score=66.28 Aligned_cols=66 Identities=24% Similarity=0.540 Sum_probs=50.2
Q ss_pred CCeEEEEEeecCCCCCceEEEecCCCCCCCcee-eeccceEEEeecCCCCeEEEEEeecCCCCceEEeEE
Q psy7616 25 GGTITLECKASGNPVPSIIWSKKDSSLPSGEKS-LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMT 93 (147)
Q Consensus 25 g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~ 93 (147)
|+.+.|.|.+.|.|.|.+.|++++..+...... .....|.|.++ .|+|.|.|.+.|..|.. .....
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~~~~~L~i~~~--~d~G~Y~C~A~N~~G~~-~~~a~ 67 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPVGRNVLELTNI--YESANYTCVAISSLGMI-EATAQ 67 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECCCccceecCccEEEEecc--ccCeeEEEEEEeCCCEE-EEEEE
Confidence 678999999999999999999998776543322 23446777776 47899999999988764 44443
No 64
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.42 E-value=1.6e-12 Score=68.16 Aligned_cols=64 Identities=20% Similarity=0.371 Sum_probs=51.0
Q ss_pred EEEeecCCCCCceEEEecCCCCCCCcee----------eeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEE
Q psy7616 30 LECKASGNPVPSIIWSKKDSSLPSGEKS----------LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTL 94 (147)
Q Consensus 30 l~C~~~~~~~~~v~w~~~~~~~~~~~~~----------~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l 94 (147)
++|.+.|.|.|.+.|++++..+...... .....|.|.++...|+|.|+|.+.|..|.. ++.+.+
T Consensus 3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~-~~~~~~ 76 (79)
T cd05855 3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGED-EKNVSA 76 (79)
T ss_pred EEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCccc-ceEEEe
Confidence 5788899999999999999888543321 123468999999999999999999999875 665544
No 65
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.42 E-value=8.2e-13 Score=67.93 Aligned_cols=65 Identities=28% Similarity=0.581 Sum_probs=51.8
Q ss_pred EEEEEeecCCCCCceEEEecCCCCCCCce--eeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEE
Q psy7616 28 ITLECKASGNPVPSIIWSKKDSSLPSGEK--SLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMT 93 (147)
Q Consensus 28 ~~l~C~~~~~~~~~v~w~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~ 93 (147)
+.|.|.+.|.|.|.+.|++++..+..... ....+.|.|.++...|+|.|.|.+.|..|.. +..+.
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~ 67 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISPEGYLAIRDVGVADQGRYECVARNTIGYA-SVSMV 67 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECCCCCCEEECCCCEEEECcCChhhCEEEEEEEECCCCcE-EEEEE
Confidence 46899999999999999999877643322 3346689999999999999999999998875 54443
No 66
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.42 E-value=3.7e-12 Score=69.30 Aligned_cols=76 Identities=18% Similarity=0.322 Sum_probs=57.6
Q ss_pred ceEEeeCCeEEEEEeecC-----CCCCceEEEecCCCCCC----Cce-eeeccceEEEeecCCCCeEEEEEeecCCCCce
Q psy7616 19 QLTVRKGGTITLECKASG-----NPVPSIIWSKKDSSLPS----GEK-SLEGFSITLEKVDRHQAGVYQCTATNGVGDPV 88 (147)
Q Consensus 19 ~~~~~~g~~~~l~C~~~~-----~~~~~v~w~~~~~~~~~----~~~-~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~ 88 (147)
+..+..|+.+.|.|...+ .|.+.+.|++++..+.. ..+ ......|.|.++...|+|.|.|.+.|..+..
T Consensus 8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~~~N~~g~~- 86 (94)
T cd05756 8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQKDLLWFLPAALEDSGLYTCVVRNSTYCM- 86 (94)
T ss_pred EEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeecCCeEEEccCCcccCeEEEEEEcCCCccE-
Confidence 446789999999999888 57889999999866431 111 2235678999999999999999999987764
Q ss_pred EEeEEEE
Q psy7616 89 TVDMTLE 95 (147)
Q Consensus 89 ~~~~~l~ 95 (147)
+..+.|.
T Consensus 87 ~~~~~L~ 93 (94)
T cd05756 87 KVSISLT 93 (94)
T ss_pred EEEEEEE
Confidence 4444443
No 67
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.41 E-value=2.7e-12 Score=67.42 Aligned_cols=69 Identities=28% Similarity=0.621 Sum_probs=52.6
Q ss_pred EEEEEeecCCCCCceEEEecCCCCCCCce---e-eeccceEEEeecCCCCeEEEEEeecCCCCce-EEeEEEEE
Q psy7616 28 ITLECKASGNPVPSIIWSKKDSSLPSGEK---S-LEGFSITLEKVDRHQAGVYQCTATNGVGDPV-TVDMTLEV 96 (147)
Q Consensus 28 ~~l~C~~~~~~~~~v~w~~~~~~~~~~~~---~-~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~-~~~~~l~v 96 (147)
++|.|.+.|.|.|.+.|++++..+..... . .....|.|.++...|+|.|.|.+.|..|... +..+.|.|
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v 74 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSI 74 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCCCCccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEE
Confidence 46899999999999999999887744321 1 2335799999999999999999999887642 34555544
No 68
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.39 E-value=4e-12 Score=66.40 Aligned_cols=67 Identities=25% Similarity=0.583 Sum_probs=51.6
Q ss_pred EEEEEeecCCCCCceEEEecCCCCCCC-ce--eeec----cceEEEeecCCCCeEEEEEeecCCCCceEEeEEEE
Q psy7616 28 ITLECKASGNPVPSIIWSKKDSSLPSG-EK--SLEG----FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLE 95 (147)
Q Consensus 28 ~~l~C~~~~~~~~~v~w~~~~~~~~~~-~~--~~~~----~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~ 95 (147)
+.|.|.+.|.|.|.+.|++++..+... .. .... ..|.|.+++..|+|.|+|.+.|..|.. ...+.|.
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~ 74 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVV-SCNARLD 74 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcE-EEEEEEe
Confidence 368999999999999999999877532 11 1111 259999999999999999999998875 5555543
No 69
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.39 E-value=5.9e-12 Score=65.62 Aligned_cols=70 Identities=26% Similarity=0.563 Sum_probs=53.1
Q ss_pred CCeEEEEEeecCCCCCceEEEec-CCCCCCCce--eeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEE
Q psy7616 25 GGTITLECKASGNPVPSIIWSKK-DSSLPSGEK--SLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLE 95 (147)
Q Consensus 25 g~~~~l~C~~~~~~~~~v~w~~~-~~~~~~~~~--~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~ 95 (147)
|+.+.|.|.+.+.|.|.+.|++. +..+..... ......|.|..+...|+|.|.|.+.|..|.. +..+.+.
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~ 73 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDNGTLDILITTVKDTGSFTCIASNAAGEA-TATVELH 73 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEecCCEEEEEECChhhCEEEEEEEECCCCeE-EEEEEEE
Confidence 67899999999999999999974 444332221 2245678999999999999999999988774 5555543
No 70
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.39 E-value=3.5e-12 Score=67.48 Aligned_cols=65 Identities=17% Similarity=0.339 Sum_probs=50.8
Q ss_pred EEEeecCCCCCceEEEecCCCCCCCcee------------eeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEE
Q psy7616 30 LECKASGNPVPSIIWSKKDSSLPSGEKS------------LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLE 95 (147)
Q Consensus 30 l~C~~~~~~~~~v~w~~~~~~~~~~~~~------------~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~ 95 (147)
+.|.+.|.|.|.+.|++++..+...... .....|.|.+++..|+|.|+|.+.|..|.. +..+.+.
T Consensus 3 i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~-~~~~~~~ 79 (81)
T cd04971 3 IPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQD-SKSISAH 79 (81)
T ss_pred EEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCe-eeEEEee
Confidence 5788999999999999999877543321 113368999999999999999999998885 5555543
No 71
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.39 E-value=2.3e-12 Score=66.64 Aligned_cols=68 Identities=31% Similarity=0.630 Sum_probs=52.9
Q ss_pred EEEEEeecCCCCCceEEEecCCCCCCCce--eeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEEE
Q psy7616 28 ITLECKASGNPVPSIIWSKKDSSLPSGEK--SLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96 (147)
Q Consensus 28 ~~l~C~~~~~~~~~v~w~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v 96 (147)
+.|.|.+.|.|.|.+.|++++..+..... ......|.|.++...|+|.|.|.+.|..|.. +..+.+.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V 70 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELPADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSA-RHTISVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECCCCceeEecCCCEEEECCCCHHHCEEEEEEEEeCCceE-EEEEEEEE
Confidence 46899999999999999998876643222 2234579999999999999999999988774 66665544
No 72
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.39 E-value=7.8e-12 Score=67.88 Aligned_cols=76 Identities=22% Similarity=0.444 Sum_probs=55.4
Q ss_pred ceEEeeCCeEEEEEeecCCCCCceEEEec-CCCCCC-Cc-eee----eccceEEEeecCCCCeEEEEEeecCCCCceEEe
Q psy7616 19 QLTVRKGGTITLECKASGNPVPSIIWSKK-DSSLPS-GE-KSL----EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVD 91 (147)
Q Consensus 19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~-~~~~~~-~~-~~~----~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~ 91 (147)
...+..|+.+.|.|.+.|.| +.+.|++. +..+.. .. ... ....|.|.+++..|+|.|+|.+.|..+....+.
T Consensus 9 ~~~v~~G~~~~l~C~~~G~p-~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~~s 87 (92)
T cd04977 9 QGEISVGESKFFLCQVIGEP-KDISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTESEAT 87 (92)
T ss_pred cEEECCCCeEEEEEEeEeeC-CeEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCcceeE
Confidence 56888999999999998876 48999974 443322 11 111 124799999999999999999999866544555
Q ss_pred EEEE
Q psy7616 92 MTLE 95 (147)
Q Consensus 92 ~~l~ 95 (147)
+.|.
T Consensus 88 v~l~ 91 (92)
T cd04977 88 VNLK 91 (92)
T ss_pred EEEE
Confidence 5443
No 73
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.39 E-value=5.6e-12 Score=66.20 Aligned_cols=66 Identities=21% Similarity=0.442 Sum_probs=52.0
Q ss_pred ceEEcCCCCceEEeeCCeEEEEEeecCCCC-CceEEEecCCCCCCCceeeeccceEEEeecCCCCeEEEEEeecC
Q psy7616 10 SIRTSPSNGQLTVRKGGTITLECKASGNPV-PSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNG 83 (147)
Q Consensus 10 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~ 83 (147)
.+...|+ ...+..|+.++|.|.+.+.|. ..+.|++++..+.. ..+.|.|.++ ..|+|.|.|.+.+.
T Consensus 2 vv~~~P~--~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~-----~~~~l~i~~~-~~dsG~Y~C~a~~~ 68 (78)
T cd05752 2 VVSLDPP--WTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET-----TTNSYRIRAA-NNDSGEYRCQTQGS 68 (78)
T ss_pred eEEeCCC--CeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec-----cCCeEEEeec-ccCCEEeEEECCCC
Confidence 3445555 458899999999999988765 46999999876522 3457888888 99999999999875
No 74
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.38 E-value=7.5e-12 Score=65.39 Aligned_cols=67 Identities=36% Similarity=0.640 Sum_probs=50.9
Q ss_pred EEEEeecCCCCCceEEEecCCCC-CC--Cce---eeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEEE
Q psy7616 29 TLECKASGNPVPSIIWSKKDSSL-PS--GEK---SLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96 (147)
Q Consensus 29 ~l~C~~~~~~~~~v~w~~~~~~~-~~--~~~---~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v 96 (147)
.|.|.+.|.|.|.+.|++++... +. ... ......|.|.++...|+|.|.|.+.|..|.. ...+.|.|
T Consensus 2 ~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~-~~~~~l~V 74 (75)
T cd05763 2 RLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSI-SANATLTV 74 (75)
T ss_pred EeEeecccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEE-EeeEEEEE
Confidence 68999999999999999987632 21 111 1234578999999999999999999988774 66666654
No 75
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.36 E-value=2.1e-11 Score=65.81 Aligned_cols=78 Identities=23% Similarity=0.409 Sum_probs=58.9
Q ss_pred ceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCC-----ceeeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEE
Q psy7616 19 QLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSG-----EKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMT 93 (147)
Q Consensus 19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~ 93 (147)
.+.+..|+.+.|.|...+ +.+.+.|++++..+... ........|.|.+++..|+|.|.|.+.+..+........
T Consensus 5 ~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~~ 83 (89)
T cd04979 5 VVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVTEDGLLIRSVSPADAGVYTCQSVEHGFKQTLATYS 83 (89)
T ss_pred EEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEcCCCEEEccCCHHHCEEEEEEEecCccceeEeEEE
Confidence 457889999999999876 77889999998766432 112234568899999999999999998766554456666
Q ss_pred EEEe
Q psy7616 94 LEVL 97 (147)
Q Consensus 94 l~v~ 97 (147)
+.|.
T Consensus 84 l~V~ 87 (89)
T cd04979 84 LNVL 87 (89)
T ss_pred EEEe
Confidence 6553
No 76
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.36 E-value=5.7e-12 Score=66.36 Aligned_cols=63 Identities=29% Similarity=0.529 Sum_probs=51.4
Q ss_pred CCeEEEEEeecCCCCCceEEEecCCCCCCCcee--e---eccceEEEeecCCCCeEEEEEeecCCCCc
Q psy7616 25 GGTITLECKASGNPVPSIIWSKKDSSLPSGEKS--L---EGFSITLEKVDRHQAGVYQCTATNGVGDP 87 (147)
Q Consensus 25 g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~--~---~~~~l~~~~~~~~~~g~y~C~~~~~~~~~ 87 (147)
|+.+.|.|.+.+.|.|.+.|++++..+....+. . ....|.|.++...|+|.|.|.+.|..|..
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~ 68 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMV 68 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEE
Confidence 678999999999999999999988766543221 1 23579999999999999999999988765
No 77
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.36 E-value=1e-11 Score=67.16 Aligned_cols=71 Identities=30% Similarity=0.455 Sum_probs=52.4
Q ss_pred CCeEEEEEeecCCCCCceEEEecC----CCCC-CCc-e--e----------eeccceEEEeecCCCCeEEEEEeecCCCC
Q psy7616 25 GGTITLECKASGNPVPSIIWSKKD----SSLP-SGE-K--S----------LEGFSITLEKVDRHQAGVYQCTATNGVGD 86 (147)
Q Consensus 25 g~~~~l~C~~~~~~~~~v~w~~~~----~~~~-~~~-~--~----------~~~~~l~~~~~~~~~~g~y~C~~~~~~~~ 86 (147)
|+.+.|.|.+.+.|.|.+.|++++ ..+. ... . . .....|.|.+++..|+|.|.|.+.|..|.
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP 80 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence 678999999999999999999963 1111 000 0 0 11246889999999999999999999887
Q ss_pred ceEEeEEEEE
Q psy7616 87 PVTVDMTLEV 96 (147)
Q Consensus 87 ~~~~~~~l~v 96 (147)
. .+.+.|.|
T Consensus 81 ~-~~sa~L~V 89 (90)
T cd04974 81 S-HHSAWLTV 89 (90)
T ss_pred c-cCCEEEEe
Confidence 5 55666654
No 78
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.35 E-value=9e-12 Score=65.76 Aligned_cols=68 Identities=31% Similarity=0.600 Sum_probs=50.8
Q ss_pred EEEEEeecCCCCCceEEEecCCCC-C-------CC--ceeeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEE
Q psy7616 28 ITLECKASGNPVPSIIWSKKDSSL-P-------SG--EKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLE 95 (147)
Q Consensus 28 ~~l~C~~~~~~~~~v~w~~~~~~~-~-------~~--~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~ 95 (147)
++|.|.+.|.|.|.+.|++.+... + .. ........|.|.++...|+|.|.|.+.|..|...+..+.|.
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~ 78 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLT 78 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEEe
Confidence 468999999999999999965421 1 01 11234567999999999999999999999887655555553
No 79
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.35 E-value=6.4e-12 Score=64.76 Aligned_cols=58 Identities=22% Similarity=0.422 Sum_probs=47.3
Q ss_pred EEEEeecCCCCCceEEEecCCCCCCC--ceeeeccceEEEeecCCCCeEEEEEeecCCCC
Q psy7616 29 TLECKASGNPVPSIIWSKKDSSLPSG--EKSLEGFSITLEKVDRHQAGVYQCTATNGVGD 86 (147)
Q Consensus 29 ~l~C~~~~~~~~~v~w~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~ 86 (147)
.|.|...|.|.|.+.|++++.++... ........|.|.+++..|+|.|+|.+.+....
T Consensus 2 ~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~~~~~~ 61 (72)
T cd07702 2 RLTPKVKAFPAPEVIWLKDGLPAAEKCSRYHVDGYSLVIKDVTEEDAGIYTILLGIKQYN 61 (72)
T ss_pred eEEeeEEEcCCCeEEEEECCEECCCCCcEEEeCCCEEEECcCCHHHCEEEEEEEEccccc
Confidence 68899999999999999999887543 22334557999999999999999999986443
No 80
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.35 E-value=7.3e-12 Score=66.64 Aligned_cols=72 Identities=17% Similarity=0.346 Sum_probs=55.9
Q ss_pred EEeeCCeEEEEEeecC-CCCCceEEEecCCCCCCCceeeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEE
Q psy7616 21 TVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLE 95 (147)
Q Consensus 21 ~~~~g~~~~l~C~~~~-~~~~~v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~ 95 (147)
.+..|++++|.|...+ .+.+.+.|++++..+.. ......+.|.+++.+|+|.|.|.+.+..+...+..+.++
T Consensus 10 ~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~---~~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s~~~~i~ 82 (83)
T cd05753 10 VVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKY---SHSNSNLSIPQATLSDSGSYHCSGIIGSYDYSSEPVSIT 82 (83)
T ss_pred eecCCCCEEEEeeCCCCCcceEEEEEECCeEccc---cCCCceEEECccCHHHCEEEEEEEEeCCceecCCCEEEE
Confidence 7889999999999754 45667999999865532 223457899999999999999999998776555555554
No 81
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.35 E-value=1.6e-11 Score=65.03 Aligned_cols=70 Identities=27% Similarity=0.512 Sum_probs=52.4
Q ss_pred CCeEEEEEeecCCCCCceEEEecCC---CC--CCCc-----eeeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEE
Q psy7616 25 GGTITLECKASGNPVPSIIWSKKDS---SL--PSGE-----KSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTL 94 (147)
Q Consensus 25 g~~~~l~C~~~~~~~~~v~w~~~~~---~~--~~~~-----~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l 94 (147)
|+.+.|.|.+.+.|.|.+.|+++.. .+ .... .......|.|.++...|+|.|.|.+.|..|.. ...+.|
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l 79 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLL-RANFPL 79 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceE-EEEEEE
Confidence 6789999999999999999999732 11 1100 11233578999999999999999999998874 666655
Q ss_pred E
Q psy7616 95 E 95 (147)
Q Consensus 95 ~ 95 (147)
.
T Consensus 80 ~ 80 (81)
T cd05765 80 S 80 (81)
T ss_pred e
Confidence 4
No 82
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.33 E-value=1.7e-11 Score=66.28 Aligned_cols=71 Identities=32% Similarity=0.463 Sum_probs=52.3
Q ss_pred CCeEEEEEeecCCCCCceEEEecC----CCCCC-Cc---eee----------eccceEEEeecCCCCeEEEEEeecCCCC
Q psy7616 25 GGTITLECKASGNPVPSIIWSKKD----SSLPS-GE---KSL----------EGFSITLEKVDRHQAGVYQCTATNGVGD 86 (147)
Q Consensus 25 g~~~~l~C~~~~~~~~~v~w~~~~----~~~~~-~~---~~~----------~~~~l~~~~~~~~~~g~y~C~~~~~~~~ 86 (147)
|+.+.|.|.+.+.|.|.+.|++.. ..+.. .. ... ....|.|.+++..|+|.|+|.+.|..|.
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI 80 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence 678999999999999999999843 22211 10 000 1246999999999999999999999887
Q ss_pred ceEEeEEEEE
Q psy7616 87 PVTVDMTLEV 96 (147)
Q Consensus 87 ~~~~~~~l~v 96 (147)
. ...+.|.|
T Consensus 81 ~-~~~a~L~V 89 (90)
T cd05858 81 S-HHSAWLTV 89 (90)
T ss_pred c-cceEEEEE
Confidence 5 55555554
No 83
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.33 E-value=1.2e-11 Score=64.88 Aligned_cols=65 Identities=23% Similarity=0.645 Sum_probs=48.4
Q ss_pred EEEEEeecCCCCCceEEEecCCCCCCC--ce--e-eeccceEEEeecC----CCCeEEEEEeecCCCCceEEeE
Q psy7616 28 ITLECKASGNPVPSIIWSKKDSSLPSG--EK--S-LEGFSITLEKVDR----HQAGVYQCTATNGVGDPVTVDM 92 (147)
Q Consensus 28 ~~l~C~~~~~~~~~v~w~~~~~~~~~~--~~--~-~~~~~l~~~~~~~----~~~g~y~C~~~~~~~~~~~~~~ 92 (147)
+.|.|.+.|.|.|.+.|++++..+... .. . ...+.|.|..+.. .|+|.|.|.+.|..|...+..+
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~ 74 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAISNEI 74 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEcccc
Confidence 468999999999999999998876422 11 1 2356788887653 6899999999999887644443
No 84
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.32 E-value=1.9e-11 Score=64.13 Aligned_cols=66 Identities=29% Similarity=0.594 Sum_probs=47.8
Q ss_pred EEEEEeecCCCCCceEEEecCCCCCC--Cce--e-eeccceEEEeecC----CCCeEEEEEeecCCCCceEEeEE
Q psy7616 28 ITLECKASGNPVPSIIWSKKDSSLPS--GEK--S-LEGFSITLEKVDR----HQAGVYQCTATNGVGDPVTVDMT 93 (147)
Q Consensus 28 ~~l~C~~~~~~~~~v~w~~~~~~~~~--~~~--~-~~~~~l~~~~~~~----~~~g~y~C~~~~~~~~~~~~~~~ 93 (147)
+.|.|.+.|.|.|.+.|++++..+.. ... . ...+.|.|..+.. .|.|.|.|.+.|..|...+..+.
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~ 75 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSNNIV 75 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEeeEEE
Confidence 46899999999999999999876521 111 1 2356677776654 37899999999988876444443
No 85
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.32 E-value=2.7e-11 Score=64.66 Aligned_cols=70 Identities=19% Similarity=0.384 Sum_probs=52.7
Q ss_pred CCeEEEEEeecCC--CCCceEEEecCCCCCCCce----------eeeccceEEEeecCCCCeEEEEEeecCCCCceEEeE
Q psy7616 25 GGTITLECKASGN--PVPSIIWSKKDSSLPSGEK----------SLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDM 92 (147)
Q Consensus 25 g~~~~l~C~~~~~--~~~~v~w~~~~~~~~~~~~----------~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~ 92 (147)
|+.+.|.|.+.+. +.+.+.|.+++..+..... ....+.|.|.+++..|+|.|.|.+.+..+.. +...
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~-~~s~ 79 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQ-KEST 79 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCce-EEEE
Confidence 6889999999988 7788999987755421110 1134579999999999999999999987764 5555
Q ss_pred EEE
Q psy7616 93 TLE 95 (147)
Q Consensus 93 ~l~ 95 (147)
.+.
T Consensus 80 ~v~ 82 (84)
T cd05742 80 KVN 82 (84)
T ss_pred EEE
Confidence 554
No 86
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.32 E-value=3.4e-11 Score=65.28 Aligned_cols=65 Identities=31% Similarity=0.615 Sum_probs=49.9
Q ss_pred eCCeEEEEEeecCCCCCceEEEecCCCCCC---CceeeeccceEEEeec-CCCCeEEEEEeecCCCCce
Q psy7616 24 KGGTITLECKASGNPVPSIIWSKKDSSLPS---GEKSLEGFSITLEKVD-RHQAGVYQCTATNGVGDPV 88 (147)
Q Consensus 24 ~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~---~~~~~~~~~l~~~~~~-~~~~g~y~C~~~~~~~~~~ 88 (147)
.++.+.|.|.+.+.|.+.+.|++++..+.. .......+.|.|.++. ..|+|.|.|.+.|..|...
T Consensus 18 ~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~ 86 (91)
T cd04967 18 DEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVGGNLVISNPSKAKDAGRYQCLASNIVGTVL 86 (91)
T ss_pred CCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEECCEEEEecCCccCCCEEEEEEEEcCCCEEE
Confidence 346799999999889999999999877632 1222345578887776 4899999999999887653
No 87
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.31 E-value=1.5e-11 Score=64.19 Aligned_cols=60 Identities=23% Similarity=0.489 Sum_probs=47.9
Q ss_pred EEEEEeecC-CCCCceEEEecCCCCCCCcee--------eeccceEEEeecCCCCeEEEEEeecCCCCc
Q psy7616 28 ITLECKASG-NPVPSIIWSKKDSSLPSGEKS--------LEGFSITLEKVDRHQAGVYQCTATNGVGDP 87 (147)
Q Consensus 28 ~~l~C~~~~-~~~~~v~w~~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~ 87 (147)
+.|.|.+.+ .|.+.+.|++++..+...... .....|.|.++...|+|.|.|.+.|..|..
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~ 69 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGND 69 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCce
Confidence 468999998 899999999998877532211 123568999999999999999999988764
No 88
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.30 E-value=3.1e-11 Score=63.19 Aligned_cols=68 Identities=26% Similarity=0.478 Sum_probs=52.8
Q ss_pred EEEEeecCCCCCceEEEecCCCCCCCc----ee-eeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEEEe
Q psy7616 29 TLECKASGNPVPSIIWSKKDSSLPSGE----KS-LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97 (147)
Q Consensus 29 ~l~C~~~~~~~~~v~w~~~~~~~~~~~----~~-~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~ 97 (147)
.|.|.+.|.|.|.+.|++++..+.... .. .....|.|.++...|+|.|.|.+.|..|.. +..+.|.|.
T Consensus 2 ~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~V~ 74 (76)
T cd05736 2 SLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVD-EDISSLFVE 74 (76)
T ss_pred EeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCc-ceEEEEEEE
Confidence 588999999999999999987764321 11 123468899999999999999999988875 666666553
No 89
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.29 E-value=7.8e-11 Score=63.03 Aligned_cols=68 Identities=26% Similarity=0.520 Sum_probs=54.9
Q ss_pred ceEEeeCCeEEEEEeecC-CCCCceEEEecCCCCCCCceeeeccceEEEeecCCCCeEEEEEeecCCCCc
Q psy7616 19 QLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDP 87 (147)
Q Consensus 19 ~~~~~~g~~~~l~C~~~~-~~~~~v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~ 87 (147)
.+.+..|+.++|.|.+.+ .+.+.+.|++++..++.. .......|.|.+++..|+|.|.|.+.|..+..
T Consensus 10 ~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~-~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~ 78 (85)
T cd05754 10 SQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSR-AMDFNGILTIRNVQLSDAGTYVCTGSNMLDTD 78 (85)
T ss_pred ceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCc-ccccCCEEEECCCCHHHCEEEEEEEeccCCeE
Confidence 557889999999999864 577889999988765433 22345679999999999999999999987764
No 90
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.28 E-value=1.3e-10 Score=63.81 Aligned_cols=82 Identities=28% Similarity=0.442 Sum_probs=59.3
Q ss_pred CCceEEcCCCCceEEeeCCeEEEEEeecCCCCC-ceEEEecCCCCCCC---ce-eee-------ccceEEEeecCCC-Ce
Q psy7616 8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVP-SIIWSKKDSSLPSG---EK-SLE-------GFSITLEKVDRHQ-AG 74 (147)
Q Consensus 8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~v~w~~~~~~~~~~---~~-~~~-------~~~l~~~~~~~~~-~g 74 (147)
||.+. .+. ...+..|+.+.|.|.+.+.|.| .+.|++++..+... .. ... .+.|.|.+++..| .|
T Consensus 2 pp~i~-~~~--~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G 78 (98)
T cd05758 2 PPIIT-SEA--TQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQT 78 (98)
T ss_pred CCeEc-CCC--cEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccce
Confidence 45553 333 4578999999999999999998 59999998766432 11 111 1368899999855 89
Q ss_pred EEEEEeecCCCCceEEeEE
Q psy7616 75 VYQCTATNGVGDPVTVDMT 93 (147)
Q Consensus 75 ~y~C~~~~~~~~~~~~~~~ 93 (147)
.|.|.+.|..|.. ...+.
T Consensus 79 ~Y~C~A~N~~G~~-~~~~~ 96 (98)
T cd05758 79 SYNCTAWNSFGSG-TAIIS 96 (98)
T ss_pred eEEEEEEcCCCcc-cEEEE
Confidence 9999999998875 44443
No 91
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.28 E-value=9.8e-11 Score=63.77 Aligned_cols=67 Identities=24% Similarity=0.432 Sum_probs=51.9
Q ss_pred CCceEEeeCCeEEEEEeecCCCCCceEEEecCCCC---------CCCcee-e----eccceEEEeecCCCCeEEEEEeec
Q psy7616 17 NGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSL---------PSGEKS-L----EGFSITLEKVDRHQAGVYQCTATN 82 (147)
Q Consensus 17 ~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~---------~~~~~~-~----~~~~l~~~~~~~~~~g~y~C~~~~ 82 (147)
..+..+..|+.+.|.|.+.+.+.+.+.|++++..+ ...... . ....|.|.++...|.|.|.|.+..
T Consensus 4 ~~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t 83 (95)
T cd05882 4 TQDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFT 83 (95)
T ss_pred cccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEe
Confidence 34678999999999999999889999999877532 111111 1 135799999999999999999887
Q ss_pred C
Q psy7616 83 G 83 (147)
Q Consensus 83 ~ 83 (147)
.
T Consensus 84 ~ 84 (95)
T cd05882 84 M 84 (95)
T ss_pred e
Confidence 3
No 92
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.27 E-value=5e-11 Score=62.51 Aligned_cols=66 Identities=26% Similarity=0.568 Sum_probs=47.8
Q ss_pred EEEEEeecCCCCCceEEEecCCCCC--CCce--e-eeccceEEEeecC----CCCeEEEEEeecCCCCceEEeEE
Q psy7616 28 ITLECKASGNPVPSIIWSKKDSSLP--SGEK--S-LEGFSITLEKVDR----HQAGVYQCTATNGVGDPVTVDMT 93 (147)
Q Consensus 28 ~~l~C~~~~~~~~~v~w~~~~~~~~--~~~~--~-~~~~~l~~~~~~~----~~~g~y~C~~~~~~~~~~~~~~~ 93 (147)
+.|.|.+.|.|.|.+.|++++..+. .... . ...+.|.|..+.. .|.|.|.|.+.|..|...+..+.
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~ 75 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSNKIL 75 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEEEEE
Confidence 4689999999999999999987542 1111 1 2456788876542 36899999999998876555443
No 93
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.27 E-value=1.2e-11 Score=62.95 Aligned_cols=50 Identities=18% Similarity=0.127 Sum_probs=37.8
Q ss_pred EeeeecCCCCcc-------ccCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616 96 VLCKILPSGEKS-------LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 146 (147)
Q Consensus 96 v~~~~~~~~~~~-------~~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V 146 (147)
..++|.+.|.++ ..+..|.+.++..+|+|.|+|.|.|..|.. +.+++++|
T Consensus 9 g~P~P~v~W~kdg~~l~~~~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~-~~~~~~~l 65 (67)
T cd05863 9 AYPPPEFQWYKDGKLISGKHSQHSLQIKDVTEASAGTYTLVLWNSAAGL-EKRISLEL 65 (67)
T ss_pred EeCCCEEEEEECCEECcccCCcCEEEECCCCHHHCEEEEEEEEECCccE-EEEEEEEE
Confidence 344555666554 245689999999999999999999999976 55666554
No 94
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.26 E-value=4.7e-11 Score=63.75 Aligned_cols=64 Identities=20% Similarity=0.385 Sum_probs=52.6
Q ss_pred ceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCC--ceeeeccceEEEeecCCCCeEEEEEeecC
Q psy7616 19 QLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSG--EKSLEGFSITLEKVDRHQAGVYQCTATNG 83 (147)
Q Consensus 19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~g~y~C~~~~~ 83 (147)
+..+..|+++.|.|...+ +.+.+.|.+++.++... ........|.|.+++..|+|.|.|.+.+.
T Consensus 5 ~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~~~~~~L~I~nv~~~DsG~Y~C~a~e~ 70 (87)
T cd05873 5 QRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYLLYRDGLLIFNASEADAGRYQCLSVEK 70 (87)
T ss_pred eEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEEEECCcEEEeCCCHHHCEEEEEEEEec
Confidence 568899999999999754 67789999999887543 23345567999999999999999999764
No 95
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.24 E-value=2.4e-11 Score=63.05 Aligned_cols=37 Identities=24% Similarity=0.418 Sum_probs=33.1
Q ss_pred cCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616 109 EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 146 (147)
Q Consensus 109 ~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V 146 (147)
..+.|.+.+++.+|+|.|+|.|.|..|.. +.++.|.|
T Consensus 37 ~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~-~~~~~l~~ 73 (73)
T cd05852 37 DDGSLEILNITKLDEGSYTCFAENNRGKA-NSTGVLSV 73 (73)
T ss_pred CCCEEEECcCChhHCEEEEEEEECCCCce-eEEEEEEC
Confidence 45679999999999999999999999998 77888875
No 96
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.21 E-value=3.3e-10 Score=60.43 Aligned_cols=75 Identities=29% Similarity=0.569 Sum_probs=56.7
Q ss_pred eEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCcee------eeccceEEEeecCCCCeEEEEEeecCCCCceEEeEE
Q psy7616 20 LTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKS------LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMT 93 (147)
Q Consensus 20 ~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~ 93 (147)
+.+..|+.+.|.|.+.+.+.+.+.|++++..+...... .....|.|.++...|.|.|.|.+.+..+.. +..+.
T Consensus 4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~-~~~~~ 82 (85)
T cd05729 4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSI-NHTYK 82 (85)
T ss_pred eEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceE-EEEEE
Confidence 35678999999999998888899999998766432111 122358888999999999999999987764 55555
Q ss_pred EE
Q psy7616 94 LE 95 (147)
Q Consensus 94 l~ 95 (147)
|.
T Consensus 83 l~ 84 (85)
T cd05729 83 VD 84 (85)
T ss_pred Ee
Confidence 43
No 97
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=99.21 E-value=1.3e-10 Score=61.26 Aligned_cols=78 Identities=32% Similarity=0.690 Sum_probs=55.7
Q ss_pred CceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCceeeeccceEEEeecCCCCeEEEEEeecCCCCce
Q psy7616 9 PSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPV 88 (147)
Q Consensus 9 p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~ 88 (147)
|.+...+. .+..|+.+.|.|.+.+.+...+.|++++..+.. ....+.+..+...|.|.|.|.+.+..+...
T Consensus 2 P~l~~~~~----~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~-----~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~ 72 (80)
T PF13895_consen 2 PVLSSSPQ----SVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINS-----SQNGLFIPNVSPEDSGNYTCRASNGSGSNT 72 (80)
T ss_dssp -EEEEESS----EEETTSEEEEEEEEESSSSSEEEEEETTEEEEE-----ESSEEEESSEEGGGTEEEEEEEEETTEEEE
T ss_pred cEEEccce----EEeCCCcEEEEEEEEcccceeeeeeeeeeeeee-----eeeeeeeeeeccccCEEEEEEEEeCCCCeE
Confidence 44544442 688999999999998877889999998755431 112266678889999999999988655433
Q ss_pred EEeEEEE
Q psy7616 89 TVDMTLE 95 (147)
Q Consensus 89 ~~~~~l~ 95 (147)
+..+.|.
T Consensus 73 s~~~~v~ 79 (80)
T PF13895_consen 73 STSVNVT 79 (80)
T ss_dssp EEEEEEE
T ss_pred eeeEEee
Confidence 4555554
No 98
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.20 E-value=5.2e-10 Score=59.64 Aligned_cols=72 Identities=22% Similarity=0.438 Sum_probs=51.6
Q ss_pred CCeEEEEEeecCCCCCceEEEecCCCCCCCc-----e----eeeccceEEEeecCCCCeEEEEEeecCCC-CceEEeEEE
Q psy7616 25 GGTITLECKASGNPVPSIIWSKKDSSLPSGE-----K----SLEGFSITLEKVDRHQAGVYQCTATNGVG-DPVTVDMTL 94 (147)
Q Consensus 25 g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~-----~----~~~~~~l~~~~~~~~~~g~y~C~~~~~~~-~~~~~~~~l 94 (147)
|++++|.|.+.+.+.+.+.|.+.++...... . ......|.|.+++..|+|.|.|.+.+... ......+.+
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i 80 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNI 80 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEE
Confidence 6889999999888889999998765322110 0 11245799999999999999999987654 223455555
Q ss_pred EE
Q psy7616 95 EV 96 (147)
Q Consensus 95 ~v 96 (147)
+|
T Consensus 81 ~V 82 (84)
T cd05861 81 TV 82 (84)
T ss_pred EE
Confidence 54
No 99
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.19 E-value=3e-10 Score=61.48 Aligned_cols=67 Identities=21% Similarity=0.365 Sum_probs=52.8
Q ss_pred EEeeCCeEEEEEeecC-----CCCCceEEEecCCCCCCCcee-eeccceEEEeecCCCCeEEEEEeecCCCCc
Q psy7616 21 TVRKGGTITLECKASG-----NPVPSIIWSKKDSSLPSGEKS-LEGFSITLEKVDRHQAGVYQCTATNGVGDP 87 (147)
Q Consensus 21 ~~~~g~~~~l~C~~~~-----~~~~~v~w~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~ 87 (147)
.+..|+...|.|...+ .+.|.+.|++++.++...... ..+..|.|.++...|+|.|+|.+.+..+..
T Consensus 6 ~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~~~~~L~I~~v~~~DsG~YtC~~~n~~~~~ 78 (92)
T cd05757 6 ILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFVKGSKLLIQNVTEEDAGNYTCKLTFTHNGK 78 (92)
T ss_pred EEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEecCCEEEEeeCChhhCEEEEEEEEecCCCE
Confidence 6778999999998543 246789999999887643332 266789999999999999999999865543
No 100
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.18 E-value=2.2e-10 Score=59.98 Aligned_cols=60 Identities=18% Similarity=0.462 Sum_probs=45.5
Q ss_pred EEEEEeecC-CCCCceEEEecCCCCCCCce-----e----eeccceEEEeecCCCCeEEEEEeecCCCCc
Q psy7616 28 ITLECKASG-NPVPSIIWSKKDSSLPSGEK-----S----LEGFSITLEKVDRHQAGVYQCTATNGVGDP 87 (147)
Q Consensus 28 ~~l~C~~~~-~~~~~v~w~~~~~~~~~~~~-----~----~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~ 87 (147)
+.|.|.+.+ .|.+.+.|++++..+..... . .....|.|.++...|+|.|.|.+.|..|..
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~ 70 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGND 70 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCce
Confidence 368999764 57789999999887742210 1 123568999999999999999999988764
No 101
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.17 E-value=6.7e-11 Score=61.60 Aligned_cols=37 Identities=30% Similarity=0.491 Sum_probs=32.9
Q ss_pred cCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616 109 EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 146 (147)
Q Consensus 109 ~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V 146 (147)
....|.+.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus 38 ~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~-~~~~~L~V 74 (74)
T cd05745 38 SSGTLRISRVALHDQGQYECQAVNIVGSQ-RTVAQLTV 74 (74)
T ss_pred cCCeEEEeeCCHHhCEEEEEEEEeCCCce-eEEEEEeC
Confidence 35578999999999999999999999988 87888876
No 102
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.15 E-value=1.3e-10 Score=60.82 Aligned_cols=38 Identities=34% Similarity=0.559 Sum_probs=34.2
Q ss_pred cCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616 109 EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 147 (147)
Q Consensus 109 ~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~ 147 (147)
.+..+.+.+++.+|+|.|+|.|.|.+|.. ..++.|.||
T Consensus 39 ~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~-~~~~~l~v~ 76 (76)
T cd05868 39 DGDTIIFSKVQERSSAVYQCNASNEYGYL-LANAFVNVL 76 (76)
T ss_pred cCCEEEECCCCHhhCEEEEEEEEcCCCEE-EEEEEEEeC
Confidence 35578889999999999999999999999 889999986
No 103
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.15 E-value=1e-09 Score=59.82 Aligned_cols=68 Identities=26% Similarity=0.440 Sum_probs=50.2
Q ss_pred CceEEeeCCeEEEEEeecCCCCCceEEEecCC--------C-CCCCce-e----eeccceEEEeecCCCCeEEEEEeecC
Q psy7616 18 GQLTVRKGGTITLECKASGNPVPSIIWSKKDS--------S-LPSGEK-S----LEGFSITLEKVDRHQAGVYQCTATNG 83 (147)
Q Consensus 18 ~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~--------~-~~~~~~-~----~~~~~l~~~~~~~~~~g~y~C~~~~~ 83 (147)
.++.+.+|+++.|.|...+.+.+.+.|++.+. . ....+. . .....|.|.+++.+|+|.|.|.+...
T Consensus 5 ~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t~ 84 (95)
T cd07701 5 QNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFTM 84 (95)
T ss_pred ceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEee
Confidence 36789999999999999988889999986322 1 111111 1 12347899999999999999999874
Q ss_pred CC
Q psy7616 84 VG 85 (147)
Q Consensus 84 ~~ 85 (147)
..
T Consensus 85 ~~ 86 (95)
T cd07701 85 PV 86 (95)
T ss_pred cC
Confidence 33
No 104
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.13 E-value=1.5e-10 Score=60.09 Aligned_cols=37 Identities=27% Similarity=0.383 Sum_probs=32.8
Q ss_pred cCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616 109 EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 146 (147)
Q Consensus 109 ~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V 146 (147)
....|.|.+++.+|+|.|+|.|.|.+|.. +.++.|.|
T Consensus 37 ~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V 73 (73)
T cd04969 37 PDGSLEILNVTKSDEGKYTCFAENFFGKA-NSTGSLSV 73 (73)
T ss_pred CCCeEEEccCChhHCEEEEEEEECCCCce-EEEEEEEC
Confidence 34579999999999999999999999998 87888876
No 105
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.13 E-value=1.3e-10 Score=60.51 Aligned_cols=34 Identities=29% Similarity=0.539 Sum_probs=31.1
Q ss_pred ceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616 112 SITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 146 (147)
Q Consensus 112 ~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V 146 (147)
.|.+.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus 42 ~L~I~~~~~~D~G~Y~C~A~N~~G~~-~~~a~L~V 75 (75)
T cd05892 42 TLLIKNVNKKDAGWYTVSAVNEAGVA-TCHARLDV 75 (75)
T ss_pred EEEECCCChhhCEEEEEEEEcCcCeE-EEEEEEeC
Confidence 68889999999999999999999988 77888876
No 106
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.13 E-value=1.4e-10 Score=60.60 Aligned_cols=38 Identities=37% Similarity=0.531 Sum_probs=34.1
Q ss_pred cCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616 109 EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 147 (147)
Q Consensus 109 ~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~ 147 (147)
.+..+.+.+++.+|+|.|+|.|.|..|.. +..+.|.|+
T Consensus 38 ~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~-~~~~~l~V~ 75 (75)
T cd05763 38 EDDVFFIVDVKIEDTGVYSCTAQNTAGSI-SANATLTVL 75 (75)
T ss_pred CCCEEEEeeCCcccCEEEEEEEEcCCCEE-EeeEEEEEC
Confidence 35578889999999999999999999987 889999986
No 107
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.13 E-value=2e-10 Score=59.29 Aligned_cols=36 Identities=25% Similarity=0.482 Sum_probs=31.5
Q ss_pred CCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616 110 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 146 (147)
Q Consensus 110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V 146 (147)
...+.+.+++.+|+|.|+|.|.|..|.. +.++.|.|
T Consensus 36 ~~~l~i~~v~~~D~G~Y~C~A~N~~G~~-~~~~~L~V 71 (71)
T cd05723 36 EHNLQVLGLVKSDEGFYQCIAENDVGNV-QASAQLII 71 (71)
T ss_pred cCCEEEEcCCcccCEEEEEEEEcCCCEE-EEEEEEEC
Confidence 4567888999999999999999999988 77888775
No 108
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.12 E-value=1.9e-10 Score=59.41 Aligned_cols=37 Identities=30% Similarity=0.475 Sum_probs=33.2
Q ss_pred cCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616 109 EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 146 (147)
Q Consensus 109 ~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V 146 (147)
.+..|.+.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus 34 ~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V 70 (71)
T cd05876 34 NNKTLQLDNVLESDDGEYVCTAENSEGSA-RHHYTVTV 70 (71)
T ss_pred CCCEEEEcccCHHhCEEEEEEEEcCCCeE-EEEEEEEE
Confidence 45688999999999999999999999988 77888876
No 109
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.12 E-value=1.5e-10 Score=59.50 Aligned_cols=38 Identities=26% Similarity=0.372 Sum_probs=30.2
Q ss_pred cCCceEEeecCCCCCeEEEEEeecCCCCC-cCeeeEEEE
Q psy7616 109 EGFSITLEKVDRHQAGVYQCTATNGVGDP-VTVDMTLEV 146 (147)
Q Consensus 109 ~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~-~~~~~~l~V 146 (147)
.+..|.+.++..+|+|.|+|.|.|..|.. .+.+++|.|
T Consensus 32 ~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l~v 70 (70)
T cd05864 32 RGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQLVV 70 (70)
T ss_pred cCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEEEC
Confidence 35678999999999999999999999977 344455543
No 110
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.12 E-value=2.7e-10 Score=59.59 Aligned_cols=37 Identities=27% Similarity=0.454 Sum_probs=33.4
Q ss_pred CCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616 110 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 147 (147)
Q Consensus 110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~ 147 (147)
...|.+.+++.+|+|.|+|.|.|..|.. ..++.|.|.
T Consensus 40 ~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~V~ 76 (76)
T cd05867 40 SGALILTDVQPSDTAVYQCEARNRHGNL-LANAHVHVV 76 (76)
T ss_pred CCEEEECCCChhhCEEEEEEEECCCCeE-EEEEEEEEC
Confidence 4578999999999999999999999988 778998884
No 111
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.12 E-value=1.6e-10 Score=59.68 Aligned_cols=37 Identities=27% Similarity=0.420 Sum_probs=30.8
Q ss_pred cCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616 109 EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 146 (147)
Q Consensus 109 ~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V 146 (147)
.+..|.+.+++.+|+|.|+|.|.|..|.. +..+++.|
T Consensus 33 ~~~~L~I~~v~~~D~G~YtC~a~N~~g~~-~~~~~~~~ 69 (71)
T cd04976 33 SGHSLTIKDVTEEDAGNYTVVLTNKQAKL-EKRLTFTL 69 (71)
T ss_pred CCCEEEECcCCHHHCEEEEEEEEcCCccE-EEEEEEEE
Confidence 45678999999999999999999999976 55555554
No 112
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.12 E-value=2.3e-10 Score=61.84 Aligned_cols=37 Identities=32% Similarity=0.442 Sum_probs=33.1
Q ss_pred CCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616 110 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 147 (147)
Q Consensus 110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~ 147 (147)
...+.|.+++.+|+|.|+|.|.|..|.. +.++.|.|+
T Consensus 54 ~~~L~I~~v~~~D~G~Y~C~A~N~~G~~-~~sa~L~V~ 90 (90)
T cd04974 54 SEVLYLRNVSFDDAGEYTCLAGNSIGPS-HHSAWLTVL 90 (90)
T ss_pred cceEEEeccccccCcEEEEEeecccCcc-cCCEEEEeC
Confidence 3468889999999999999999999998 889999885
No 113
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.11 E-value=2.1e-10 Score=59.99 Aligned_cols=39 Identities=28% Similarity=0.484 Sum_probs=34.9
Q ss_pred ccCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616 108 LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 147 (147)
Q Consensus 108 ~~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~ 147 (147)
..+..|.+.+++.+|+|.|+|.|.|..|.. +..+.|.|+
T Consensus 38 ~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~-~~~~~l~V~ 76 (76)
T cd04978 38 VDGGTLILSNVQPNDTAVYQCNASNVHGYL-LANAFVHVV 76 (76)
T ss_pred ccCCEEEECCCChhhCEEEEEEEEccCCeE-EEeEEEEEC
Confidence 446778999999999999999999999988 889999885
No 114
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.10 E-value=3e-10 Score=61.13 Aligned_cols=38 Identities=21% Similarity=0.381 Sum_probs=33.7
Q ss_pred cCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616 109 EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 147 (147)
Q Consensus 109 ~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~ 147 (147)
.+..|.+.+++.+|+|.|+|.|.|..|.. +..+.|.|.
T Consensus 51 ~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~-~~~~~l~V~ 88 (88)
T cd05851 51 SGAVLKIFNIQPEDEGTYECEAENIKGKD-KHQARVYVQ 88 (88)
T ss_pred CCCEEEECcCChhhCEEEEEEEEcCCCce-EEEEEEEEC
Confidence 45678999999999999999999999988 888888874
No 115
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.10 E-value=1.1e-09 Score=59.38 Aligned_cols=68 Identities=19% Similarity=0.326 Sum_probs=52.6
Q ss_pred ceEEeeCCeEEEEEee-cCCCCCceEEEecCCCC--CCCc--eee-eccceEEEeecCCCCeEEEEEeecCCCC
Q psy7616 19 QLTVRKGGTITLECKA-SGNPVPSIIWSKKDSSL--PSGE--KSL-EGFSITLEKVDRHQAGVYQCTATNGVGD 86 (147)
Q Consensus 19 ~~~~~~g~~~~l~C~~-~~~~~~~v~w~~~~~~~--~~~~--~~~-~~~~l~~~~~~~~~~g~y~C~~~~~~~~ 86 (147)
...+..|+.+.|.|.. .+.|.+.+.|++++..+ ..+. ... ..+.|.|.++...|+|.|.|.+.+....
T Consensus 12 ~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~ 85 (96)
T cd05727 12 EVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPSST 85 (96)
T ss_pred ceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEecccC
Confidence 3478899999999974 56788999999997653 1111 122 3678999999999999999999986543
No 116
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=99.09 E-value=3.8e-09 Score=56.07 Aligned_cols=64 Identities=17% Similarity=0.356 Sum_probs=51.5
Q ss_pred ceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCce-eeeccceEEEeecCCCCeEEEEEeecC
Q psy7616 19 QLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK-SLEGFSITLEKVDRHQAGVYQCTATNG 83 (147)
Q Consensus 19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~g~y~C~~~~~ 83 (147)
+..+..|+++.|+|...+ +...+.|++++..+..+.. ......+.|..+...|+|.|.|.+...
T Consensus 5 ~~tv~~g~~v~L~C~~~s-~~A~v~W~~ng~~l~~~~r~~~~~~GLlI~~~~~~dsG~Y~C~s~E~ 69 (85)
T cd05872 5 NRTVAPGADVVLPCQLRS-NLASPVWLFNGTPLNAQFSYRVGTDGLLILVTSPEHSGTYRCYSEEE 69 (85)
T ss_pred EEEEecCCCEEEECCCCC-CCccEEEEECCcccCCCcceEEeCCCCEEEECCHhhCEEEEEEEecC
Confidence 457889999999999877 5669999999988764333 334556789999999999999998643
No 117
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.09 E-value=2.9e-10 Score=62.39 Aligned_cols=37 Identities=19% Similarity=0.396 Sum_probs=33.1
Q ss_pred CCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616 110 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 147 (147)
Q Consensus 110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~ 147 (147)
...|.+.++..+|+|.|+|.|.|.+|.. ...++|.|+
T Consensus 55 ~s~L~I~~~~~~D~G~Ytc~a~N~~G~~-~~~~~l~V~ 91 (98)
T cd05762 55 SSKLTITEGQQEHCGCYTLEVENKLGSR-QAQVNLTVV 91 (98)
T ss_pred eeEEEECCCChhhCEEEEEEEEcCCCce-eEEEEEEEe
Confidence 4568889999999999999999999998 778988874
No 118
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.09 E-value=2.9e-10 Score=59.16 Aligned_cols=36 Identities=22% Similarity=0.481 Sum_probs=31.9
Q ss_pred CCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616 110 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 146 (147)
Q Consensus 110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V 146 (147)
...|.+.+++.+|+|.|+|.|.|..|.. +.++.|.|
T Consensus 39 ~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~V 74 (74)
T cd05748 39 STSLVIKNAERSDSGKYTLTLKNPAGEK-SATINVKV 74 (74)
T ss_pred eEEEEECCCCcCcCEEEEEEEECCCccE-EEEEEEEC
Confidence 4568889999999999999999999988 88888876
No 119
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=99.08 E-value=1.7e-09 Score=54.02 Aligned_cols=61 Identities=38% Similarity=0.770 Sum_probs=47.7
Q ss_pred eCCeEEEEEeecCCCCCceEEEecCCCCCCCc-eeeeccceEEEeecCCCCeEEEEEeecCC
Q psy7616 24 KGGTITLECKASGNPVPSIIWSKKDSSLPSGE-KSLEGFSITLEKVDRHQAGVYQCTATNGV 84 (147)
Q Consensus 24 ~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~g~y~C~~~~~~ 84 (147)
.|+.+.|.|...+.+.+.+.|++++..+.... .......|.|.++...|+|.|.|.+.+..
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~ 62 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPESNRLSASGSTLTIKSVSLEDSGEYTCVAENSA 62 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECCCCCEEecCCcEEEEeeCCcccCEEEEEEEecCC
Confidence 37889999998777888999999877665211 12345579999999999999999997754
No 120
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.08 E-value=2.2e-10 Score=59.68 Aligned_cols=34 Identities=24% Similarity=0.414 Sum_probs=30.8
Q ss_pred ceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616 112 SITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 146 (147)
Q Consensus 112 ~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V 146 (147)
.|.+.+++.+|+|.|+|.|.|..|.. +.++.|.|
T Consensus 42 ~L~I~~v~~~D~G~Y~C~A~N~~G~~-~~~a~L~V 75 (75)
T cd05893 42 CLLIQGATKEDAGWYTVSAKNEAGIV-SCTARLDV 75 (75)
T ss_pred EEEECCCCHHHCEEEEEEEEcCCCEE-EEEEEEeC
Confidence 47889999999999999999999988 77888876
No 121
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.07 E-value=3.3e-10 Score=61.29 Aligned_cols=38 Identities=32% Similarity=0.546 Sum_probs=34.5
Q ss_pred cCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616 109 EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 146 (147)
Q Consensus 109 ~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V 146 (147)
.+..|.|.+++.+|+|.|.|.|.|..|...+..+.|.|
T Consensus 53 ~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~L~V 90 (91)
T cd05740 53 DNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPYILNV 90 (91)
T ss_pred CCCEEEECcCChhhCEEEEEEEEcCCCCEEeeeEEEEe
Confidence 45679999999999999999999999988788899887
No 122
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.07 E-value=5.1e-10 Score=61.64 Aligned_cols=36 Identities=22% Similarity=0.336 Sum_probs=32.2
Q ss_pred CceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616 111 FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 147 (147)
Q Consensus 111 ~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~ 147 (147)
..|.|.+++.+|+|.|+|.|.|..|.. +.++.|.|.
T Consensus 65 ~~L~i~~v~~~D~G~Ytc~A~N~~G~~-~~t~~L~V~ 100 (101)
T cd04975 65 SELKLVRLKESEAGTYTFLASNSDASK-SLTFELYVN 100 (101)
T ss_pred EEEEEeecCHhhCeeEEEEEECCCccE-EEEEEEEEE
Confidence 568889999999999999999999987 888888773
No 123
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.06 E-value=4.2e-10 Score=60.26 Aligned_cols=35 Identities=34% Similarity=0.551 Sum_probs=31.5
Q ss_pred CceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616 111 FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 146 (147)
Q Consensus 111 ~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V 146 (147)
..|.+.++..+|+|.|+|.|.|..|.. +.++.|.|
T Consensus 52 ~~L~I~~~~~~D~G~Y~c~a~N~~G~~-~~~~~l~V 86 (86)
T cd05894 52 SSFVIEGAEREDEGVYTITVTNPVGED-HASLFVKV 86 (86)
T ss_pred EEEEECCCccCcCEEEEEEEEeCCCcE-EEEEEEEC
Confidence 468889999999999999999999988 77888876
No 124
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.06 E-value=4.5e-10 Score=58.90 Aligned_cols=33 Identities=18% Similarity=0.399 Sum_probs=28.9
Q ss_pred ceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEE
Q psy7616 112 SITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLE 145 (147)
Q Consensus 112 ~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~ 145 (147)
.|.+.++..+|+|.|+|.|.|.+|.. +.++.+.
T Consensus 45 ~L~i~~~~~~D~G~YtC~A~N~~G~~-~~~~~~~ 77 (79)
T cd05855 45 CLQLDNPTHLNNGIYTLVAKNEYGED-EKNVSAH 77 (79)
T ss_pred EEEECCCCcccCEEEEEEEEcCCccc-ceEEEee
Confidence 57788999999999999999999988 7777664
No 125
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.06 E-value=8.4e-10 Score=57.88 Aligned_cols=38 Identities=26% Similarity=0.542 Sum_probs=32.1
Q ss_pred CCceEEeecCCCCCeEEEEEeecCCCCC-cCeeeEEEEC
Q psy7616 110 GFSITLEKVDRHQAGVYQCTATNGVGDP-VTVDMTLEVL 147 (147)
Q Consensus 110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~-~~~~~~l~V~ 147 (147)
+..|.+.+++.+|+|.|+|.|.|.+|.. .+..++|.|+
T Consensus 37 ~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v~ 75 (77)
T cd05760 37 ERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSII 75 (77)
T ss_pred CCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEEe
Confidence 4578899999999999999999999976 3567888774
No 126
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=99.05 E-value=1.1e-08 Score=55.38 Aligned_cols=75 Identities=24% Similarity=0.370 Sum_probs=51.4
Q ss_pred eEEeeCCeEEEEEeecCCCCCceEEEecCC--CC----C-CCceeeeccceEEEeecCCCCeEEEEEeec-CCCCceEEe
Q psy7616 20 LTVRKGGTITLECKASGNPVPSIIWSKKDS--SL----P-SGEKSLEGFSITLEKVDRHQAGVYQCTATN-GVGDPVTVD 91 (147)
Q Consensus 20 ~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~--~~----~-~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~-~~~~~~~~~ 91 (147)
+....|+.+.|.|.. +.|.+.+.|++... .. . ..........|.|.++...|+|.|.|.+.+ ..+.. ...
T Consensus 6 ~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~-~~~ 83 (91)
T cd05871 6 VYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIHTERGLLLRSLQRSDAGVYTCTAVEHSFSQT-LAK 83 (91)
T ss_pred EEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEEecCeEEEeeCChhHCEEEEEEEEccCCeEE-EEE
Confidence 457789999999986 46888999998432 11 1 112223445699999999999999999974 43332 344
Q ss_pred EEEEE
Q psy7616 92 MTLEV 96 (147)
Q Consensus 92 ~~l~v 96 (147)
..|.|
T Consensus 84 ~~l~v 88 (91)
T cd05871 84 YTLHV 88 (91)
T ss_pred EEEEE
Confidence 44544
No 127
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=99.05 E-value=6.9e-09 Score=56.63 Aligned_cols=68 Identities=28% Similarity=0.495 Sum_probs=49.3
Q ss_pred CCceEEeeCCeEEEEEeecCCCCCceEEEecCCC---------CCCCce-e----eeccceEEEeecCCCCeEEEEEeec
Q psy7616 17 NGQLTVRKGGTITLECKASGNPVPSIIWSKKDSS---------LPSGEK-S----LEGFSITLEKVDRHQAGVYQCTATN 82 (147)
Q Consensus 17 ~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~---------~~~~~~-~----~~~~~l~~~~~~~~~~g~y~C~~~~ 82 (147)
++.+.+..|+.+.|.|.+.+.+.+.+.|++.++. ...... . .....|.|.+++..|+|.|.|.+..
T Consensus 4 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~ 83 (95)
T cd05717 4 TQDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYT 83 (95)
T ss_pred CCcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEec
Confidence 3467889999999999988777788999863321 111111 1 1234689999999999999999887
Q ss_pred CC
Q psy7616 83 GV 84 (147)
Q Consensus 83 ~~ 84 (147)
..
T Consensus 84 ~~ 85 (95)
T cd05717 84 MP 85 (95)
T ss_pred CC
Confidence 54
No 128
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.05 E-value=7.2e-10 Score=57.69 Aligned_cols=38 Identities=26% Similarity=0.478 Sum_probs=33.1
Q ss_pred cCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616 109 EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 146 (147)
Q Consensus 109 ~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V 146 (147)
.++.|.+.+++.+|+|.|+|.|.|..|...+..+.|.|
T Consensus 36 ~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 36 RSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred CCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence 34568889999999999999999999987788888876
No 129
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.05 E-value=5.9e-10 Score=61.42 Aligned_cols=36 Identities=17% Similarity=0.301 Sum_probs=32.2
Q ss_pred CceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616 111 FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 147 (147)
Q Consensus 111 ~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~ 147 (147)
..|.+.+++.+|+|.|+|.|.|..|.. +.++.|.|.
T Consensus 65 s~L~I~~v~~~D~G~Ytc~A~N~~g~~-~~t~~l~V~ 100 (101)
T cd05859 65 SKLKLIRAKEEDSGLYTALAQNEDAVK-SYTFALQIQ 100 (101)
T ss_pred cEEEEeeCCHHHCEEEEEEEEcCCceE-EEEEEEEEE
Confidence 468899999999999999999999988 888888773
No 130
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.05 E-value=1e-09 Score=59.03 Aligned_cols=38 Identities=24% Similarity=0.396 Sum_probs=34.1
Q ss_pred cCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616 109 EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 147 (147)
Q Consensus 109 ~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~ 147 (147)
.+..|.+.+++.+|+|.|+|.|.|..|.. +..+.|.|+
T Consensus 51 ~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V~ 88 (88)
T cd04968 51 SGAVLKIPNIQFEDEGTYECEAENIKGKD-THQGRIYVQ 88 (88)
T ss_pred eCCEEEECCCCcccCEEEEEEEEECCCcE-EEEEEEEEC
Confidence 46788999999999999999999999998 888888874
No 131
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.05 E-value=2.7e-10 Score=58.50 Aligned_cols=37 Identities=30% Similarity=0.495 Sum_probs=32.7
Q ss_pred cCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616 109 EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 146 (147)
Q Consensus 109 ~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V 146 (147)
.+..|.+.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus 33 ~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V 69 (69)
T cd05725 33 DDKSLKIRNVTAGDEGSYTCEAENMVGKI-EASASLTV 69 (69)
T ss_pred eCCEEEECcCChhHCEEEEEEEEcCCCcE-EEEEEEEC
Confidence 45679999999999999999999999988 77888775
No 132
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.04 E-value=4.7e-10 Score=57.86 Aligned_cols=36 Identities=25% Similarity=0.605 Sum_probs=32.3
Q ss_pred CCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616 110 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 146 (147)
Q Consensus 110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V 146 (147)
+..|.+.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus 35 ~~~L~i~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V 70 (71)
T cd05731 35 NKTLKIDNVSEEDDGEYRCTASNSLGSA-RHTISVTV 70 (71)
T ss_pred CCEEEECCCCHHHCEEEEEEEEeCCceE-EEEEEEEE
Confidence 4578899999999999999999999988 77888876
No 133
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.03 E-value=5.9e-10 Score=58.16 Aligned_cols=34 Identities=24% Similarity=0.483 Sum_probs=30.9
Q ss_pred ceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616 112 SITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 146 (147)
Q Consensus 112 ~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V 146 (147)
.|.+.+++.+|+|.|+|.|.|..|.. +.++.|.|
T Consensus 42 ~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~v 75 (75)
T cd05744 42 CLLIQNANKEDAGWYTVSAVNEAGVV-SCNARLDV 75 (75)
T ss_pred EEEECCCCcccCEEEEEEEEcCCCcE-EEEEEEeC
Confidence 58889999999999999999999988 77888875
No 134
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.02 E-value=9.3e-10 Score=59.72 Aligned_cols=34 Identities=35% Similarity=0.542 Sum_probs=30.8
Q ss_pred ceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616 112 SITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 146 (147)
Q Consensus 112 ~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V 146 (147)
.|.+.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus 59 ~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~v~v 92 (92)
T cd05737 59 SLTIKGVSSEDSGKYGIVVKNKYGGE-TVDVTVSV 92 (92)
T ss_pred EEEEccCChhhCEEEEEEEEECCCcc-eEEEEEeC
Confidence 68889999999999999999999988 77888775
No 135
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.02 E-value=8.8e-10 Score=60.17 Aligned_cols=38 Identities=29% Similarity=0.606 Sum_probs=33.7
Q ss_pred cCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616 109 EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 147 (147)
Q Consensus 109 ~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~ 147 (147)
.+..|.+.+++.+|.|.|+|.|.|..|.. +..+.|.|+
T Consensus 56 ~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~L~V~ 93 (95)
T cd05730 56 DGSEMTILDVDKLDEAEYTCIAENKAGEQ-EAEIHLKVF 93 (95)
T ss_pred CCCEEEECCCChhhCEEEEEEEEcCCCeE-EEEEEEEEE
Confidence 35568999999999999999999999988 888888874
No 136
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.01 E-value=5.4e-10 Score=57.35 Aligned_cols=34 Identities=29% Similarity=0.511 Sum_probs=30.1
Q ss_pred CCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEE
Q psy7616 110 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTL 144 (147)
Q Consensus 110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l 144 (147)
...|.+.+++.+|+|.|+|.|.|..|.. +.++.|
T Consensus 35 ~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~L 68 (69)
T cd05746 35 EGYLAIRDVGVADQGRYECVARNTIGYA-SVSMVL 68 (69)
T ss_pred CCEEEECcCChhhCEEEEEEEECCCCcE-EEEEEe
Confidence 5578999999999999999999999988 767665
No 137
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=99.01 E-value=5.4e-09 Score=55.96 Aligned_cols=71 Identities=21% Similarity=0.310 Sum_probs=49.7
Q ss_pred CCeEEEEEeecCCC--CCceEEEecCCCCCCC---c----e----eeeccceEEEeecCCCCeEEEEEeecCCCCceEEe
Q psy7616 25 GGTITLECKASGNP--VPSIIWSKKDSSLPSG---E----K----SLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVD 91 (147)
Q Consensus 25 g~~~~l~C~~~~~~--~~~v~w~~~~~~~~~~---~----~----~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~ 91 (147)
|+++.|.|.+.+.+ ...+.|...+...... . . ....+.|.|.+++..|+|.|.|.+.+..+.. ...
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~-~~~ 79 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIA-KNS 79 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEe-ccc
Confidence 68899999987644 4568998877543110 0 0 1234579999999999999999999876553 455
Q ss_pred EEEEE
Q psy7616 92 MTLEV 96 (147)
Q Consensus 92 ~~l~v 96 (147)
+.+.|
T Consensus 80 t~~~V 84 (86)
T cd05862 80 TIVIV 84 (86)
T ss_pred EEEEE
Confidence 55544
No 138
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=99.00 E-value=2.6e-09 Score=53.91 Aligned_cols=56 Identities=34% Similarity=0.767 Sum_probs=43.3
Q ss_pred CCeEEEEEee-cCCCCCceEEEecCCCCCCCceee---ecc----ceEEEeecCCCCeEEEEEe
Q psy7616 25 GGTITLECKA-SGNPVPSIIWSKKDSSLPSGEKSL---EGF----SITLEKVDRHQAGVYQCTA 80 (147)
Q Consensus 25 g~~~~l~C~~-~~~~~~~v~w~~~~~~~~~~~~~~---~~~----~l~~~~~~~~~~g~y~C~~ 80 (147)
|+.+.|.|.+ .+.+...+.|.+++.......... ... .|.|.+++..|+|.|.|.+
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 7889999998 666778899999988765433211 111 2999999999999999975
No 139
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.00 E-value=4e-09 Score=57.11 Aligned_cols=67 Identities=18% Similarity=0.278 Sum_probs=52.7
Q ss_pred ceEEeeCCeEEEEEe-ecCCCCCceEEEecCCCC-CCCc--eeeeccceEEEeecCCCCe-EEEEEeecCCC
Q psy7616 19 QLTVRKGGTITLECK-ASGNPVPSIIWSKKDSSL-PSGE--KSLEGFSITLEKVDRHQAG-VYQCTATNGVG 85 (147)
Q Consensus 19 ~~~~~~g~~~~l~C~-~~~~~~~~v~w~~~~~~~-~~~~--~~~~~~~l~~~~~~~~~~g-~y~C~~~~~~~ 85 (147)
.+.+.+|+.+.|.|. ..+.|.|.+.|++++... .... .....+.|.|.++...|+| .|.|.+.+...
T Consensus 12 ~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~~ 83 (95)
T cd05845 12 PVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMGQNGNLYFANVEEQDSHPDYICHAHFPGL 83 (95)
T ss_pred eeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEECCCceEEEEEEehhhCCCCeEEEEEcccc
Confidence 568899999999997 688899999999876442 2111 2334578999999999999 79999988653
No 140
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.99 E-value=9.6e-10 Score=57.20 Aligned_cols=37 Identities=19% Similarity=0.463 Sum_probs=32.5
Q ss_pred cCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616 109 EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 146 (147)
Q Consensus 109 ~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V 146 (147)
..+.|.+.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus 38 ~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~v 74 (74)
T cd05764 38 DNGTLDILITTVKDTGSFTCIASNAAGEA-TATVELHI 74 (74)
T ss_pred cCCEEEEEECChhhCEEEEEEEECCCCeE-EEEEEEEC
Confidence 34578899999999999999999999988 87888875
No 141
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.99 E-value=1.3e-08 Score=55.59 Aligned_cols=68 Identities=21% Similarity=0.312 Sum_probs=50.0
Q ss_pred ceEEeeCCeEEEEEeec-----------CCCCCceEEEecCCCCCCC--------ceeeeccceEEEeecCCCCeEEEEE
Q psy7616 19 QLTVRKGGTITLECKAS-----------GNPVPSIIWSKKDSSLPSG--------EKSLEGFSITLEKVDRHQAGVYQCT 79 (147)
Q Consensus 19 ~~~~~~g~~~~l~C~~~-----------~~~~~~v~w~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~g~y~C~ 79 (147)
.+.+.+|+++.|.|..- ......+.|+|++..+... +-......|.|.++..+|+|.|.|.
T Consensus 9 ~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C~ 88 (104)
T cd05896 9 KYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTCV 88 (104)
T ss_pred eEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEEE
Confidence 45788999999999851 1123479999996444221 2234677899999999999999999
Q ss_pred eecCCCC
Q psy7616 80 ATNGVGD 86 (147)
Q Consensus 80 ~~~~~~~ 86 (147)
+.|....
T Consensus 89 ~rN~t~C 95 (104)
T cd05896 89 LRNSTYC 95 (104)
T ss_pred ECCCCcc
Confidence 9887644
No 142
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.98 E-value=1.3e-09 Score=58.24 Aligned_cols=38 Identities=29% Similarity=0.476 Sum_probs=33.3
Q ss_pred ccCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616 108 LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 146 (147)
Q Consensus 108 ~~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V 146 (147)
..+..|.+.+++.+|+|.|+|.|.|..|.. ..++.|+|
T Consensus 48 ~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~V 85 (85)
T cd05728 48 VEAGDLRITKLSLSDSGMYQCVAENKHGTI-YASAELAV 85 (85)
T ss_pred EeCCEEEEeeCCHHHCEEEEEEEECCCCeE-EEEEEEEC
Confidence 345679999999999999999999999988 77888875
No 143
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=98.98 E-value=1.6e-09 Score=57.27 Aligned_cols=33 Identities=15% Similarity=0.329 Sum_probs=28.6
Q ss_pred ceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEE
Q psy7616 112 SITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLE 145 (147)
Q Consensus 112 ~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~ 145 (147)
.|.+.+++.+|+|.|+|.|.|.+|.. +..+++.
T Consensus 47 ~L~I~~~~~~D~G~YtC~A~N~~G~~-~~~~~~~ 79 (81)
T cd04971 47 CLQFDNPTHVNNGNYTLVASNEYGQD-SKSISAH 79 (81)
T ss_pred EEEECCCCcccCeEEEEEEEeCCCCe-eeEEEee
Confidence 58889999999999999999999988 6666654
No 144
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=98.98 E-value=2.2e-09 Score=56.87 Aligned_cols=36 Identities=19% Similarity=0.571 Sum_probs=31.6
Q ss_pred CCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616 110 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 146 (147)
Q Consensus 110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V 146 (147)
...|.+.+++.+|+|.|+|.|.|..|.. +..+.|+|
T Consensus 47 ~~~L~i~~v~~~D~G~Y~C~a~N~~G~~-~~~~~v~v 82 (82)
T cd05856 47 KWTLSLKNLKPEDSGKYTCHVSNRAGEI-NATYKVDV 82 (82)
T ss_pred eEEEEEccCChhhCEEEEEEEEcCCccE-EEEEEEeC
Confidence 3568889999999999999999999987 77888875
No 145
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=98.98 E-value=1.6e-09 Score=58.23 Aligned_cols=36 Identities=22% Similarity=0.397 Sum_probs=31.8
Q ss_pred CceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616 111 FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 147 (147)
Q Consensus 111 ~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~ 147 (147)
..|.+.++..+|+|.|+|.|.|.+|.. +..+.|.|.
T Consensus 47 s~L~I~~~~~~D~G~YtC~A~N~~G~~-~~~~~L~V~ 82 (88)
T cd05735 47 STLQILPTVREDSGFFSCHAINSYGED-RGIIQLTVQ 82 (88)
T ss_pred EEEEECCCCcccCEEEEEEEEcCCCcc-eEEEEEEEe
Confidence 357778999999999999999999988 888888874
No 146
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=98.97 E-value=2e-08 Score=54.82 Aligned_cols=74 Identities=24% Similarity=0.382 Sum_probs=54.5
Q ss_pred ceEEeeCCeEEEEEeecCCCCC-ceEEEecCCCCCCC---cee--e------eccceEEEeecCCC-CeEEEEEeecCCC
Q psy7616 19 QLTVRKGGTITLECKASGNPVP-SIIWSKKDSSLPSG---EKS--L------EGFSITLEKVDRHQ-AGVYQCTATNGVG 85 (147)
Q Consensus 19 ~~~~~~g~~~~l~C~~~~~~~~-~v~w~~~~~~~~~~---~~~--~------~~~~l~~~~~~~~~-~g~y~C~~~~~~~ 85 (147)
...+..|+.+.|.|.+.+.|.| .+.|..++..+... ... . ..+.|.|.++...| .|.|.|.+.|..|
T Consensus 10 s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~~G 89 (98)
T cd05898 10 VQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNSFG 89 (98)
T ss_pred eEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeCCc
Confidence 4478899999999999887876 47888877655322 111 1 34478999998767 6899999999998
Q ss_pred CceEEeEE
Q psy7616 86 DPVTVDMT 93 (147)
Q Consensus 86 ~~~~~~~~ 93 (147)
.. ...+.
T Consensus 90 ~d-~~~i~ 96 (98)
T cd05898 90 SG-TAIIQ 96 (98)
T ss_pred cc-eEEEE
Confidence 86 44443
No 147
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=98.96 E-value=1.4e-08 Score=63.87 Aligned_cols=65 Identities=12% Similarity=0.331 Sum_probs=50.7
Q ss_pred ceEEeeCCeEEEEEeecC-----CCCCceEEEecCCCCCCCceee---eccceEEEeecCCCCeEEEEEeecC
Q psy7616 19 QLTVRKGGTITLECKASG-----NPVPSIIWSKKDSSLPSGEKSL---EGFSITLEKVDRHQAGVYQCTATNG 83 (147)
Q Consensus 19 ~~~~~~g~~~~l~C~~~~-----~~~~~v~w~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~g~y~C~~~~~ 83 (147)
...+..|+.+.|.|.+.+ .|.|.+.|++++..+....+.. ....|.|.+++..|+|.|+|.+...
T Consensus 138 ~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~r~~~~~~~~~L~I~~V~~~DsG~YtC~a~~~ 210 (227)
T PHA02826 138 NYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTDRIQLRNNNSTLVIKSATHDDSGIYTCNLRFN 210 (227)
T ss_pred cceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCCCEEEeCCCCEEEECcCCHHhCEEEEEEEEEe
Confidence 346678999999998753 3568899999998875433322 3457999999999999999999764
No 148
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.95 E-value=1.2e-08 Score=55.25 Aligned_cols=72 Identities=22% Similarity=0.404 Sum_probs=52.9
Q ss_pred CCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCce--eeeccceEEEeecCCCCeEEEEEeecC
Q psy7616 8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK--SLEGFSITLEKVDRHQAGVYQCTATNG 83 (147)
Q Consensus 8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~g~y~C~~~~~ 83 (147)
+|.+...|.. .+..|++++|.|... .+...+.|++++........ ......+.|.+++..|+|.|+|...+.
T Consensus 2 kP~L~a~p~~---vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 2 KPSLWAEPSS---VVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKKPPEPQNKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred CCEEEecCCC---ccCCCCcEEEEEecC-CCCCEEEEEECCCCccccccCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence 4566666642 688999999999875 46778999998865432111 123446888999999999999998875
No 149
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=98.95 E-value=1.1e-09 Score=59.22 Aligned_cols=36 Identities=33% Similarity=0.417 Sum_probs=33.4
Q ss_pred CceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616 111 FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 147 (147)
Q Consensus 111 ~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~ 147 (147)
..|.+.+++.+|+|.|+|.|.|..|.. +.++.|.|+
T Consensus 55 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~-~~~a~L~V~ 90 (90)
T cd05858 55 EVLYLRNVTFEDAGEYTCLAGNSIGIS-HHSAWLTVL 90 (90)
T ss_pred eEEEEccCCHHHCEEEEEEEEeCCCcc-cceEEEEEC
Confidence 468999999999999999999999988 889999986
No 150
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=98.93 E-value=3.7e-09 Score=58.03 Aligned_cols=35 Identities=26% Similarity=0.546 Sum_probs=31.7
Q ss_pred CceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616 111 FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 146 (147)
Q Consensus 111 ~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V 146 (147)
..|.|.+++.+|+|.|+|.|.|.+|.. +.++.|+|
T Consensus 64 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~-~~~~~l~~ 98 (98)
T cd05870 64 SSLHIKDVKLSDSGRYDCEAASRIGGH-QKSMYLDI 98 (98)
T ss_pred eEEEEeeCCcCCCEEEEEEEeccCCcc-eeEEEEeC
Confidence 478999999999999999999999988 77888875
No 151
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=98.93 E-value=3.7e-09 Score=57.12 Aligned_cols=36 Identities=25% Similarity=0.473 Sum_probs=31.6
Q ss_pred CCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616 110 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 146 (147)
Q Consensus 110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V 146 (147)
...|.+.+++.+|.|.|+|.|.|..|.. +..++|+|
T Consensus 55 ~~~L~I~~v~~~D~g~Y~C~A~N~~G~~-~~~~~L~v 90 (90)
T cd04972 55 IYNLQLSNITSETQTTVTCTAENPVGQA-NVSVQVTV 90 (90)
T ss_pred EEEEEEecCCcccCEEEEEEEECCCCce-eEEEEEeC
Confidence 3468889999999999999999999988 77888875
No 152
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.92 E-value=2.3e-09 Score=56.69 Aligned_cols=36 Identities=28% Similarity=0.407 Sum_probs=32.5
Q ss_pred CCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616 110 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 146 (147)
Q Consensus 110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V 146 (147)
...|.+.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus 46 ~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~v 81 (81)
T cd05765 46 IGQLVIYNAQPQDAGLYTCTARNSGGLL-RANFPLSV 81 (81)
T ss_pred ccEEEEccCCcccCEEEEEEEecCCceE-EEEEEEeC
Confidence 3578899999999999999999999987 88888876
No 153
>smart00409 IG Immunoglobulin.
Probab=98.92 E-value=9.6e-08 Score=50.43 Aligned_cols=76 Identities=32% Similarity=0.629 Sum_probs=55.0
Q ss_pred ceEEeeCCeEEEEEeecCCCCCceEEEec-CCCCCCC-ce-eee---ccceEEEeecCCCCeEEEEEeecCCCCceEEeE
Q psy7616 19 QLTVRKGGTITLECKASGNPVPSIIWSKK-DSSLPSG-EK-SLE---GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDM 92 (147)
Q Consensus 19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~-~~~~~~~-~~-~~~---~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~ 92 (147)
...+..|+++.|.|.+.+.+.+.+.|+++ +..+... .. ... ...|.+.++...|.|.|.|.+.+..+.. ...+
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~-~~~~ 81 (86)
T smart00409 3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSA-SSTT 81 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeE-EEEE
Confidence 45778999999999998877788999998 5554311 11 112 2468899999999999999999766554 3334
Q ss_pred EEE
Q psy7616 93 TLE 95 (147)
Q Consensus 93 ~l~ 95 (147)
.+.
T Consensus 82 ~l~ 84 (86)
T smart00409 82 TLT 84 (86)
T ss_pred EEE
Confidence 443
No 154
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.92 E-value=9.6e-08 Score=50.43 Aligned_cols=76 Identities=32% Similarity=0.629 Sum_probs=55.0
Q ss_pred ceEEeeCCeEEEEEeecCCCCCceEEEec-CCCCCCC-ce-eee---ccceEEEeecCCCCeEEEEEeecCCCCceEEeE
Q psy7616 19 QLTVRKGGTITLECKASGNPVPSIIWSKK-DSSLPSG-EK-SLE---GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDM 92 (147)
Q Consensus 19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~-~~~~~~~-~~-~~~---~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~ 92 (147)
...+..|+++.|.|.+.+.+.+.+.|+++ +..+... .. ... ...|.+.++...|.|.|.|.+.+..+.. ...+
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~-~~~~ 81 (86)
T smart00410 3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSA-SSTT 81 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeE-EEEE
Confidence 45778999999999998877788999998 5554311 11 112 2468899999999999999999766554 3334
Q ss_pred EEE
Q psy7616 93 TLE 95 (147)
Q Consensus 93 ~l~ 95 (147)
.+.
T Consensus 82 ~l~ 84 (86)
T smart00410 82 TLT 84 (86)
T ss_pred EEE
Confidence 443
No 155
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=98.92 E-value=1.9e-09 Score=58.39 Aligned_cols=37 Identities=27% Similarity=0.556 Sum_probs=33.5
Q ss_pred CceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616 111 FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 147 (147)
Q Consensus 111 ~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~ 147 (147)
..|.+.+++.+|+|.|+|.|.|..|.....++.|.|+
T Consensus 56 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~i~l~~~ 92 (92)
T cd05866 56 SRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIY 92 (92)
T ss_pred eEEEEecCChHHCEEEEEEEEcCCCcEEEEEEEEEEC
Confidence 3789999999999999999999999877888998875
No 156
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=98.91 E-value=4.9e-09 Score=57.43 Aligned_cols=35 Identities=43% Similarity=0.651 Sum_probs=31.5
Q ss_pred CceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616 111 FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 146 (147)
Q Consensus 111 ~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V 146 (147)
..|.+.+++.+|+|.|+|.|.|..|.. +.++.|.|
T Consensus 63 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~-~~~~~l~v 97 (97)
T cd05869 63 SSLTLKYIQYTDAGEYLCTASNTIGQD-SQSMYLEV 97 (97)
T ss_pred EEEEEecCccCcCEEEEEEEecCCCCe-eEEEEEEC
Confidence 468889999999999999999999988 88888876
No 157
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.91 E-value=7.2e-09 Score=56.22 Aligned_cols=66 Identities=17% Similarity=0.382 Sum_probs=48.1
Q ss_pred EEeeCCeEEEEEeecCCCCCceEEEecCCCC-CC-------------Cce--------eeeccceEEEeecCCCCeEEEE
Q psy7616 21 TVRKGGTITLECKASGNPVPSIIWSKKDSSL-PS-------------GEK--------SLEGFSITLEKVDRHQAGVYQC 78 (147)
Q Consensus 21 ~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~-~~-------------~~~--------~~~~~~l~~~~~~~~~~g~y~C 78 (147)
.+..|+.++|+|...+.+.+.+.|++.+... .. ..+ ......|.|.+++.+|+|.|.|
T Consensus 3 ~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~C 82 (94)
T cd07690 3 LGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYIC 82 (94)
T ss_pred EeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEEE
Confidence 5678999999999988888899999654321 00 000 1122359999999999999999
Q ss_pred EeecCCCC
Q psy7616 79 TATNGVGD 86 (147)
Q Consensus 79 ~~~~~~~~ 86 (147)
.+.+..++
T Consensus 83 ~v~~~~~~ 90 (94)
T cd07690 83 EVEDKKEE 90 (94)
T ss_pred EECCccce
Confidence 99886543
No 158
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=98.90 E-value=2.3e-09 Score=57.04 Aligned_cols=38 Identities=18% Similarity=0.312 Sum_probs=33.6
Q ss_pred cCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616 109 EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 147 (147)
Q Consensus 109 ~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~ 147 (147)
..+.|.+.+++..|+|+|+|.|+|..+.. +.++.|.|.
T Consensus 45 ~~~~L~I~nv~~~dsG~YtC~a~n~~~~~-~a~a~L~V~ 82 (85)
T cd05853 45 SAGDLMIRSIQLKHAGKYVCMVQTSVDKL-SAAADLIVR 82 (85)
T ss_pred CCCcEEEecCCHHHCEEEEEEEEcccCce-EEEEEEEEe
Confidence 34579999999999999999999999988 888888773
No 159
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=98.90 E-value=4.3e-09 Score=55.44 Aligned_cols=37 Identities=19% Similarity=0.474 Sum_probs=32.3
Q ss_pred cCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616 109 EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 146 (147)
Q Consensus 109 ~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V 146 (147)
.+..|.+.+++.+|+|.|+|.|.|..|.. +..+.|+|
T Consensus 43 ~~~~L~I~~~~~~DsG~Y~C~a~n~~g~~-~~~~~v~V 79 (79)
T cd04973 43 TGEEVQIKDAVPRDSGLYACVTSSPSGSD-TTYFSVNV 79 (79)
T ss_pred eCCEEEECCCChhhCEEEEEEEeCCCCcc-cEEEEEeC
Confidence 35678999999999999999999999987 77888776
No 160
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=98.90 E-value=2.5e-09 Score=57.13 Aligned_cols=37 Identities=27% Similarity=0.335 Sum_probs=33.0
Q ss_pred CCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616 110 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 147 (147)
Q Consensus 110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~ 147 (147)
...|.+.+++.+|+|.|+|.|.|..|.. +.++.|.|.
T Consensus 46 ~~~L~I~~v~~~D~G~YtC~A~n~~g~~-~~~~~L~V~ 82 (85)
T cd05854 46 IGDLVIVNAQLSHAGTYTCTAQTVVDSA-SASATLVVR 82 (85)
T ss_pred EeEEEEccCChhhCeEEEEEEecCCCCE-EEEEEEEEE
Confidence 3578999999999999999999999988 888888874
No 161
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=98.89 E-value=2.9e-09 Score=56.89 Aligned_cols=35 Identities=29% Similarity=0.502 Sum_probs=31.2
Q ss_pred CceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616 111 FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 146 (147)
Q Consensus 111 ~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V 146 (147)
..+.+.+++.+|+|.|+|.|.|..|.. +.++.|+|
T Consensus 51 ~~l~i~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~v 85 (85)
T cd05857 51 WSLIMESVVPSDKGNYTCVVENEYGSI-NHTYHLDV 85 (85)
T ss_pred eEEEEccCCcccCEEEEEEEEeCCCEE-EEEEEEEC
Confidence 457788999999999999999999988 88888876
No 162
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=98.89 E-value=3.6e-09 Score=57.75 Aligned_cols=36 Identities=19% Similarity=0.562 Sum_probs=31.9
Q ss_pred CceEEeecCCCCCeEEEEEeecCC-CCCcCeeeEEEEC
Q psy7616 111 FSITLEKVDRHQAGVYQCTATNGV-GDPVTVDMTLEVL 147 (147)
Q Consensus 111 ~~~~l~~~~~~d~G~Y~C~a~n~~-g~~~~~~~~l~V~ 147 (147)
..|.+.+++.+|+|.|+|.|.|.. |.. +.++.|.|+
T Consensus 60 ~~L~I~~v~~~D~G~YtC~A~N~~~g~~-~~s~~l~v~ 96 (96)
T cd05865 60 STLTIYNANIDDAGIYKCVVSNEDEGES-EATVNVKIF 96 (96)
T ss_pred eEEEEeccChhhCEEEEEEEEcCCCCcE-EEEEEEEEC
Confidence 568899999999999999999998 655 888999886
No 163
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=98.89 E-value=5.2e-09 Score=55.11 Aligned_cols=38 Identities=29% Similarity=0.490 Sum_probs=33.7
Q ss_pred cCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616 109 EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 146 (147)
Q Consensus 109 ~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V 146 (147)
....|.+.+++.+|+|.|+|.|.|..|...+..+.|+|
T Consensus 42 ~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~~ 79 (79)
T cd05734 42 SNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLTV 79 (79)
T ss_pred cCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEEeC
Confidence 34678899999999999999999999988888888876
No 164
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=98.88 E-value=8.9e-09 Score=53.79 Aligned_cols=36 Identities=28% Similarity=0.411 Sum_probs=31.9
Q ss_pred CCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616 110 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 146 (147)
Q Consensus 110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V 146 (147)
+..+.+.+++.+|.|.|+|.|.|..|.. +..+.|.|
T Consensus 38 ~~~l~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~V 73 (76)
T cd05736 38 GSELHISNVRYEDTGAYTCIAKNEAGVD-EDISSLFV 73 (76)
T ss_pred CCEEEECcCCcccCEEEEEEEEcCCCCc-ceEEEEEE
Confidence 4468889999999999999999999988 77888876
No 165
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=98.87 E-value=5e-09 Score=56.04 Aligned_cols=37 Identities=27% Similarity=0.496 Sum_probs=32.8
Q ss_pred CCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616 110 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 146 (147)
Q Consensus 110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V 146 (147)
+..|.+.+++.+|+|.|+|.|.|..|...+..+.|.|
T Consensus 50 ~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~l~V 86 (86)
T cd05724 50 DGNLLIAEARKSDEGTYKCVATNMVGERESAAARLSV 86 (86)
T ss_pred CCEEEEeECCcccCEEEEEEEEeccCceeeeeEEEEC
Confidence 4679999999999999999999999988777787765
No 166
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=98.86 E-value=1e-08 Score=55.62 Aligned_cols=34 Identities=35% Similarity=0.554 Sum_probs=30.4
Q ss_pred ceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616 112 SITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 146 (147)
Q Consensus 112 ~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V 146 (147)
.|.+.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus 59 ~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~v~~ 92 (92)
T cd05891 59 SLTIKGVTSEDSGKYSINVKNKYGGE-TVDVTVSV 92 (92)
T ss_pred EEEECCCChhhCEEEEEEEEeCCCce-eeEEEEEC
Confidence 68889999999999999999999988 77777765
No 167
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=98.85 E-value=4.6e-09 Score=54.14 Aligned_cols=37 Identities=24% Similarity=0.353 Sum_probs=28.5
Q ss_pred CCceEEeecCCCCCeEEEEEeecCC-CCCcCeeeEEEE
Q psy7616 110 GFSITLEKVDRHQAGVYQCTATNGV-GDPVTVDMTLEV 146 (147)
Q Consensus 110 ~~~~~l~~~~~~d~G~Y~C~a~n~~-g~~~~~~~~l~V 146 (147)
+..|.+.+++.+|+|.|+|.|.|.. |......++|.|
T Consensus 35 ~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~~~~ 72 (72)
T cd07702 35 GYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTITLIV 72 (72)
T ss_pred CCEEEECcCCHHHCEEEEEEEEccccceEeeEEEEEEC
Confidence 4578899999999999999999995 444455555543
No 168
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=98.85 E-value=1.1e-08 Score=55.89 Aligned_cols=35 Identities=43% Similarity=0.652 Sum_probs=31.5
Q ss_pred CceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616 111 FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 146 (147)
Q Consensus 111 ~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V 146 (147)
..|.|.+++.+|+|.|+|.|.|..|.. +.++.|.|
T Consensus 62 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~s~~l~v 96 (96)
T cd05732 62 SSLTLKDVQLTDAGRYDCEASNRIGGD-QQSMYLEV 96 (96)
T ss_pred EEEEECcCCcCcCEEeEEEEEeCCCCc-EEEEEEeC
Confidence 468889999999999999999999988 88888875
No 169
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.84 E-value=5e-08 Score=52.96 Aligned_cols=66 Identities=15% Similarity=0.213 Sum_probs=49.3
Q ss_pred EEeeCCeEEEEEee-c----CCCCCceEEEecCCCCCCCce--e--eeccceEEEeecCCCCeEEEEEeecCCCC
Q psy7616 21 TVRKGGTITLECKA-S----GNPVPSIIWSKKDSSLPSGEK--S--LEGFSITLEKVDRHQAGVYQCTATNGVGD 86 (147)
Q Consensus 21 ~~~~g~~~~l~C~~-~----~~~~~~v~w~~~~~~~~~~~~--~--~~~~~l~~~~~~~~~~g~y~C~~~~~~~~ 86 (147)
.+..|.+..|.|.- . ..+.+.+.|++++.++..... . .+...|.|.++...|+|.|+|.+.+..+.
T Consensus 6 ~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g 80 (95)
T cd05897 6 ILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEG 80 (95)
T ss_pred EeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecCCCCEEEEEEcChhhCEEEEEEEEEeeCC
Confidence 56678899999972 2 335678999999987753221 1 23457999999999999999999886544
No 170
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.84 E-value=2.8e-07 Score=51.27 Aligned_cols=36 Identities=25% Similarity=0.532 Sum_probs=30.8
Q ss_pred CCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616 110 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 146 (147)
Q Consensus 110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V 146 (147)
..+|.|.+++.+|+|.|+|.+.+..+.. ...+.|.|
T Consensus 67 ~~sL~I~~v~~sD~G~Y~C~v~~~~~~~-~~~v~L~V 102 (106)
T cd05714 67 DASLVITDLRLEDSGRYRCEVIDGIEDE-QDTVELEV 102 (106)
T ss_pred cceEEECCCCHHHCEEEEEEEEcCCCce-EEEEEEEE
Confidence 4578899999999999999999987765 77787776
No 171
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=98.83 E-value=5.3e-09 Score=55.87 Aligned_cols=37 Identities=24% Similarity=0.333 Sum_probs=33.0
Q ss_pred CCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616 110 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 147 (147)
Q Consensus 110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~ 147 (147)
...|.+.+++.+|+|.|+|.|.|..|.. +.++.|.|.
T Consensus 46 ~~~L~I~~v~~~D~G~Y~C~a~n~~g~~-~~~~~l~V~ 82 (85)
T cd04970 46 NGDLMIRNAQLKHAGKYTCTAQTVVDSL-SASADLIVR 82 (85)
T ss_pred cceEEEccCCHHhCeeeEEEEecCCCcE-EEEEEEEEE
Confidence 4579999999999999999999999988 778888873
No 172
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.83 E-value=4e-07 Score=51.39 Aligned_cols=38 Identities=24% Similarity=0.336 Sum_probs=29.2
Q ss_pred cCCceEEeecCCCCCeEEEEEeecCCCCC-cCeeeEEEE
Q psy7616 109 EGFSITLEKVDRHQAGVYQCTATNGVGDP-VTVDMTLEV 146 (147)
Q Consensus 109 ~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~-~~~~~~l~V 146 (147)
...++.|.+++.+|.|.|+|.+.|.-+.. ....+.|.|
T Consensus 78 ~daSI~I~nv~~sD~G~Y~C~v~n~p~~~~~~~~~~l~v 116 (116)
T cd05879 78 KDGSIVIHNLDYTDNGTFTCDVKNPPDIVGKSSQVTLYV 116 (116)
T ss_pred CeeEEEEccCCcccCEEEEEEEEcCCCcCCceeEEEEEC
Confidence 34578899999999999999999997654 344455543
No 173
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=98.82 E-value=1.1e-08 Score=55.32 Aligned_cols=37 Identities=30% Similarity=0.419 Sum_probs=33.0
Q ss_pred CCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616 110 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 147 (147)
Q Consensus 110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~ 147 (147)
...|.|.+++.+|+|.|+|.|.|..|.. ...+.|.|.
T Consensus 46 ~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V~ 82 (90)
T cd05726 46 TGDLTITNVQRSDVGYYICQTLNVAGSI-LTKAYLEVT 82 (90)
T ss_pred CCeEEEeeCChhhCEEEEEEEEcCCCce-EEEEEEEEe
Confidence 4579999999999999999999999988 778888873
No 174
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.80 E-value=1.5e-07 Score=52.09 Aligned_cols=66 Identities=17% Similarity=0.246 Sum_probs=47.9
Q ss_pred EEeeCCeEEEEEeecCCCCCceEEEecCCCCCC---------------------CceeeeccceEEEeecCCCCeEEEEE
Q psy7616 21 TVRKGGTITLECKASGNPVPSIIWSKKDSSLPS---------------------GEKSLEGFSITLEKVDRHQAGVYQCT 79 (147)
Q Consensus 21 ~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~---------------------~~~~~~~~~l~~~~~~~~~~g~y~C~ 79 (147)
.+..|+++.|.|.........+.|+++...... ......+.+|.|++++..|+|.|.|.
T Consensus 9 ~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~G~Y~~~ 88 (105)
T cd05774 9 QVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDTGFYTLQ 88 (105)
T ss_pred cccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccCEEEEEE
Confidence 678999999999765445557999996432110 01123456899999999999999999
Q ss_pred eecCCCC
Q psy7616 80 ATNGVGD 86 (147)
Q Consensus 80 ~~~~~~~ 86 (147)
+.+....
T Consensus 89 v~~~~~~ 95 (105)
T cd05774 89 TITTNFQ 95 (105)
T ss_pred EEeCCcc
Confidence 9886543
No 175
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=98.80 E-value=2.8e-07 Score=50.26 Aligned_cols=77 Identities=17% Similarity=0.296 Sum_probs=59.9
Q ss_pred ceEEeeCCeEEEEEeecCCCCCc-eEEEecCCCCCCCce----------eeeccceEEEeecCCCCeEEEEEeecCCCCc
Q psy7616 19 QLTVRKGGTITLECKASGNPVPS-IIWSKKDSSLPSGEK----------SLEGFSITLEKVDRHQAGVYQCTATNGVGDP 87 (147)
Q Consensus 19 ~~~~~~g~~~~l~C~~~~~~~~~-v~w~~~~~~~~~~~~----------~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~ 87 (147)
...+..|+.+.|.|...+.|.|. +.|.+++..+..... ....+.|.+..++..+.|.|+|.+.|.....
T Consensus 12 ~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~ 91 (101)
T cd05860 12 TIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDASA 91 (101)
T ss_pred eEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCeE
Confidence 45788999999999999999997 999998765522111 1134578999999999999999999987664
Q ss_pred eEEeEEEEE
Q psy7616 88 VTVDMTLEV 96 (147)
Q Consensus 88 ~~~~~~l~v 96 (147)
+..+.|.+
T Consensus 92 -s~tF~l~v 99 (101)
T cd05860 92 -SVTFNVYV 99 (101)
T ss_pred -EEEEEEEE
Confidence 66666654
No 176
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.80 E-value=3.7e-07 Score=51.19 Aligned_cols=37 Identities=16% Similarity=0.495 Sum_probs=30.5
Q ss_pred cCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616 109 EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 146 (147)
Q Consensus 109 ~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V 146 (147)
...+|+|.+++.+|+|.|+|.+....... +..+.|.|
T Consensus 72 ~~asL~I~nl~~sDsG~Y~C~V~~g~~~~-~~~v~l~v 108 (112)
T cd05900 72 SDATLEITELRSNDSGTYRCEVMHGIEDN-YDTVEVQV 108 (112)
T ss_pred CCcEEEEeecccccCEEEEEEEecCCCCc-eeEEEEEE
Confidence 35678999999999999999999776666 66777765
No 177
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=98.79 E-value=1.1e-08 Score=53.73 Aligned_cols=27 Identities=30% Similarity=0.498 Sum_probs=25.0
Q ss_pred CceEEeecCCCCCeEEEEEeecCCCCC
Q psy7616 111 FSITLEKVDRHQAGVYQCTATNGVGDP 137 (147)
Q Consensus 111 ~~~~l~~~~~~d~G~Y~C~a~n~~g~~ 137 (147)
..|.+.+++.+|+|.|+|.|.|..|..
T Consensus 42 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~ 68 (78)
T cd05743 42 GTLTIRDVKESDQGAYTCEAINTRGMV 68 (78)
T ss_pred EEEEECCCChHHCEEEEEEEEecCCEE
Confidence 468889999999999999999999987
No 178
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=98.78 E-value=1.8e-08 Score=54.85 Aligned_cols=35 Identities=26% Similarity=0.469 Sum_probs=28.3
Q ss_pred CCceEEeecC-CCCCeEEEEEeecCCCCCcCeeeEE
Q psy7616 110 GFSITLEKVD-RHQAGVYQCTATNGVGDPVTVDMTL 144 (147)
Q Consensus 110 ~~~~~l~~~~-~~d~G~Y~C~a~n~~g~~~~~~~~l 144 (147)
++.+.+.++. .+|+|.|+|.|.|.+|...+..+.|
T Consensus 57 ~g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~S~~~~l 92 (94)
T cd05848 57 DGNLIISNPSEVKDSGRYQCLATNSIGSILSREALL 92 (94)
T ss_pred CCeEEEccCCccCcCEEEEEEEEcCCCeEEeccEEE
Confidence 4567777874 6999999999999999886666655
No 179
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=98.78 E-value=2.1e-08 Score=54.35 Aligned_cols=34 Identities=24% Similarity=0.378 Sum_probs=29.7
Q ss_pred CCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEE
Q psy7616 110 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTL 144 (147)
Q Consensus 110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l 144 (147)
...|.+.+++.+|+|.|+|.|.|..|.. +..+.|
T Consensus 58 ~~~L~i~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l 91 (92)
T cd05747 58 KSTFEISKVQMSDEGNYTVVVENSEGKQ-EAQFTL 91 (92)
T ss_pred eeEEEECCCCcccCEeEEEEEEcCCCCE-eEEEEe
Confidence 3578889999999999999999999987 767765
No 180
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=98.78 E-value=1.6e-08 Score=54.82 Aligned_cols=36 Identities=25% Similarity=0.560 Sum_probs=31.0
Q ss_pred CceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616 111 FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 146 (147)
Q Consensus 111 ~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V 146 (147)
..|++.+++.+|+|.|+|.|.|..|...+.++.|.|
T Consensus 57 ~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~~sv~l~~ 92 (92)
T cd04977 57 STLTIYNANIEDAGIYKCVATDAKGTESEATVNLKI 92 (92)
T ss_pred EEEEEecCCcccCEEEEEEEEcCCCCcceeEEEEEC
Confidence 468899999999999999999998766577888765
No 181
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.77 E-value=1.4e-07 Score=49.44 Aligned_cols=60 Identities=13% Similarity=0.295 Sum_probs=45.1
Q ss_pred EEEEEeec-CCCCCceEEEecCCCCCCCce-------eeeccceEEEeecCCCCeEEEEEeecCCCCc
Q psy7616 28 ITLECKAS-GNPVPSIIWSKKDSSLPSGEK-------SLEGFSITLEKVDRHQAGVYQCTATNGVGDP 87 (147)
Q Consensus 28 ~~l~C~~~-~~~~~~v~w~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~ 87 (147)
+.|.|... +.|++.+.|++++.++..... ....+.|.|......|.+.|.|.+.|..+..
T Consensus 2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~ 69 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS 69 (80)
T ss_pred EEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence 57899864 568889999999988854221 1233468888888888899999999976654
No 182
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.76 E-value=1.2e-07 Score=51.30 Aligned_cols=70 Identities=17% Similarity=0.278 Sum_probs=49.0
Q ss_pred CCeEEEEEeecCCCCCceEEEecCCCCCCC--------------------ceeeeccceEEEeecCCCCeEEEEEeecCC
Q psy7616 25 GGTITLECKASGNPVPSIIWSKKDSSLPSG--------------------EKSLEGFSITLEKVDRHQAGVYQCTATNGV 84 (147)
Q Consensus 25 g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~--------------------~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~ 84 (147)
|++++|.|.........+.|++........ .......+|.|.+++..|+|.|.|.+....
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~~~~ 80 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSGTYTLQIISTN 80 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcEEEEEEEEcCC
Confidence 788999998776556679999865432110 012234679999999999999999998876
Q ss_pred CCceEEeEEE
Q psy7616 85 GDPVTVDMTL 94 (147)
Q Consensus 85 ~~~~~~~~~l 94 (147)
+......+.|
T Consensus 81 ~~~~~~~~~l 90 (92)
T cd05741 81 GVTENAKFFL 90 (92)
T ss_pred CcEEEEEEEE
Confidence 5543444443
No 183
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.74 E-value=4.8e-07 Score=47.78 Aligned_cols=74 Identities=16% Similarity=0.340 Sum_probs=51.7
Q ss_pred EEeeCCeEEEEEeecCCCC--CceEEEecCCCCCCCceeeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEEE
Q psy7616 21 TVRKGGTITLECKASGNPV--PSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96 (147)
Q Consensus 21 ~~~~g~~~~l~C~~~~~~~--~~v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v 96 (147)
.+..|++++|.|...+.+. +.+.|...+..... ........|.+..+...|+|.|.|.+...... ....+.+.|
T Consensus 10 ~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~-~~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~-~~~~~~V~V 85 (88)
T cd07694 10 HVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQ-ILNQDKKTLNLVQLGPNDSGTWDCIVSVNSSE-KTLKLDIKV 85 (88)
T ss_pred eeecCCcEEEEEecCCCCCCCccEEEeCCCCccce-eccCCccEEEeceeCcccCCEEEEEEEECceE-EEEEeeEEE
Confidence 6789999999999865444 48999987765321 11235567888999999999999999754222 244444444
No 184
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.74 E-value=6.9e-07 Score=50.46 Aligned_cols=37 Identities=22% Similarity=0.312 Sum_probs=29.4
Q ss_pred CCceEEeecCCCCCeEEEEEeecCCCCC-cCeeeEEEE
Q psy7616 110 GFSITLEKVDRHQAGVYQCTATNGVGDP-VTVDMTLEV 146 (147)
Q Consensus 110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~-~~~~~~l~V 146 (147)
..+|.|.+++.+|+|.|+|.+.|..+.. ....+.|+|
T Consensus 78 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~~ 115 (115)
T cd05880 78 DASILIWQLQPTDNGTYTCQVKNPPDVHGPIGEIRLRV 115 (115)
T ss_pred ceEEEEeeCChhhCEEEEEEEEeCCCCCCCccEEEEeC
Confidence 4568899999999999999999987753 245666664
No 185
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=98.73 E-value=2.1e-08 Score=53.45 Aligned_cols=37 Identities=19% Similarity=0.442 Sum_probs=32.5
Q ss_pred CCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616 110 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 147 (147)
Q Consensus 110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~ 147 (147)
...|.+.+++.+|+|.|+|.|.|..|.. +.+..|.|+
T Consensus 48 ~s~L~I~~v~~~DsG~Y~C~a~n~~~~~-~~s~~v~v~ 84 (84)
T cd05742 48 SSTLTIPNATLKDSGTYTCAASSGTMDQ-KESTKVNIH 84 (84)
T ss_pred EEEEEECCCChhhCEEEEEEEccCCCce-EEEEEEEEC
Confidence 3468889999999999999999999988 778888875
No 186
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=98.73 E-value=2e-08 Score=52.59 Aligned_cols=35 Identities=23% Similarity=0.563 Sum_probs=28.2
Q ss_pred CCceEEeecCC----CCCeEEEEEeecCCCCCcCeeeEE
Q psy7616 110 GFSITLEKVDR----HQAGVYQCTATNGVGDPVTVDMTL 144 (147)
Q Consensus 110 ~~~~~l~~~~~----~d~G~Y~C~a~n~~g~~~~~~~~l 144 (147)
.+.|.|.+++. +|+|.|+|.|.|.+|...+..+.|
T Consensus 38 ~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~l 76 (77)
T cd05733 38 SGTLVIDNMNGGRAEDYEGEYQCYASNELGTAISNEIHL 76 (77)
T ss_pred CCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEccccEE
Confidence 46777877754 789999999999999886666665
No 187
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=98.72 E-value=1.4e-08 Score=54.69 Aligned_cols=36 Identities=39% Similarity=0.711 Sum_probs=31.7
Q ss_pred CCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616 110 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 146 (147)
Q Consensus 110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V 146 (147)
...|.+.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus 55 ~~~L~I~~v~~~D~G~Y~C~~~n~~g~~-~~~~~l~V 90 (90)
T PF07679_consen 55 SSSLTIKNVTREDAGTYTCVASNSSGEA-TASVNLTV 90 (90)
T ss_dssp EEEEEESSESGGGSEEEEEEEEETTEEE-EEEEEEEE
T ss_pred eeEEccCCCChhhCEEEEEEEEECCCEE-EEEEEEEC
Confidence 4568889999999999999999999988 87888876
No 188
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.72 E-value=5.9e-07 Score=49.96 Aligned_cols=36 Identities=22% Similarity=0.497 Sum_probs=30.8
Q ss_pred CCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616 110 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 146 (147)
Q Consensus 110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V 146 (147)
..+|.|.+++.+|+|.|+|.+.+..+.. ...++|.|
T Consensus 67 ~~sL~I~~v~~~DsG~Y~C~v~~~~~~~-~~~~~l~v 102 (106)
T cd05877 67 DASLVITDLRLEDYGRYRCEVIDGLEDE-SVVVALRL 102 (106)
T ss_pred cEEEEEccCChHHCEEEEEEEEecccce-EEEEEEEE
Confidence 3468899999999999999999988876 77787776
No 189
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=98.71 E-value=3.5e-08 Score=53.81 Aligned_cols=37 Identities=32% Similarity=0.545 Sum_probs=30.2
Q ss_pred CCceEEeec-----CCCCCeEEEEEeecC-CCCCcCeeeEEEE
Q psy7616 110 GFSITLEKV-----DRHQAGVYQCTATNG-VGDPVTVDMTLEV 146 (147)
Q Consensus 110 ~~~~~l~~~-----~~~d~G~Y~C~a~n~-~g~~~~~~~~l~V 146 (147)
++.+.+.++ +.+|+|.|+|.|.|. .|...+..+.|+|
T Consensus 53 ~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~~~s~~~~l~v 95 (95)
T cd05722 53 NGSLLITSVVHSKHNKPDEGFYQCVAQNDSLGSIVSRTARLTV 95 (95)
T ss_pred CCeEEEeeeeccCCCCCcCEEEEEEEECCccCcEEEeeeEEeC
Confidence 445666555 689999999999999 9988788888876
No 190
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.70 E-value=2.2e-08 Score=51.85 Aligned_cols=72 Identities=38% Similarity=0.714 Sum_probs=46.5
Q ss_pred CCceEEcCCCCceEEeeCCeEEEEEeecCCC-CCceEEEecCCCC--CCCceeeeccceEEEeecCCCCeEEEEEeec
Q psy7616 8 PPSIRTSPSNGQLTVRKGGTITLECKASGNP-VPSIIWSKKDSSL--PSGEKSLEGFSITLEKVDRHQAGVYQCTATN 82 (147)
Q Consensus 8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~-~~~v~w~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~ 82 (147)
+|.+...+.. ....+..+.|.|.+.+.+ .+.+.|+...... ...........|.+.++..+|.|.|.|.+.|
T Consensus 1 kP~I~~~~~~---~~~~~~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 1 KPQISVPPPP---VVTSGGSVTLTCSAEGGPPPPSISWYDSNPSFNSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp ESEEEEESTS---EEETTEEEEEEEEESSEESSEEEEEETEEEEEEEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred CCEEEEcCCC---cEeeceeEEEEEEEccccCCeEEEEEecCCceeeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 3556555543 333344499999998876 7789999110000 0111123556788999999999999999865
No 191
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=98.69 E-value=4.9e-08 Score=53.15 Aligned_cols=36 Identities=28% Similarity=0.477 Sum_probs=29.2
Q ss_pred CCceEEeecC-CCCCeEEEEEeecCCCCCcCeeeEEE
Q psy7616 110 GFSITLEKVD-RHQAGVYQCTATNGVGDPVTVDMTLE 145 (147)
Q Consensus 110 ~~~~~l~~~~-~~d~G~Y~C~a~n~~g~~~~~~~~l~ 145 (147)
++.|.+.++. .+|+|.|+|.|.|..|...+..+.|.
T Consensus 57 ~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l~ 93 (94)
T cd05850 57 AGNLVINNPQKARDAGSYQCLAINRCGTVVSREANLR 93 (94)
T ss_pred CCeEEEccCCccCcCEEEEEEEEcCcCcEEEEEEEEe
Confidence 4567777755 59999999999999998877777764
No 192
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.68 E-value=3.4e-08 Score=53.72 Aligned_cols=36 Identities=19% Similarity=0.258 Sum_probs=32.0
Q ss_pred CCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616 110 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 146 (147)
Q Consensus 110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V 146 (147)
+..|.|.+++.+|+|.|+|.+.|..|.. +..+.|+|
T Consensus 59 ~~~L~I~~~~~~DsG~Y~C~~~N~~g~~-~~~~~L~v 94 (94)
T cd05756 59 KDLLWFLPAALEDSGLYTCVVRNSTYCM-KVSISLTV 94 (94)
T ss_pred CCeEEEccCCcccCeEEEEEEcCCCccE-EEEEEEEC
Confidence 5678899999999999999999999987 77888776
No 193
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=98.67 E-value=8e-08 Score=53.76 Aligned_cols=37 Identities=24% Similarity=0.442 Sum_probs=31.6
Q ss_pred CCceEEeecC-CCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616 110 GFSITLEKVD-RHQAGVYQCTATNGVGDPVTVDMTLEVL 147 (147)
Q Consensus 110 ~~~~~l~~~~-~~d~G~Y~C~a~n~~g~~~~~~~~l~V~ 147 (147)
+..|.+.++. .+|.|.|+|.|.|.+|.. +..+.|.|.
T Consensus 68 ~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~-~~~i~L~~~ 105 (109)
T cd05773 68 TSILTIINVSAALDYALFTCTAHNSLGED-SLDIQLVST 105 (109)
T ss_pred eeEEEECcCCccCCCEEEEEEEEeCCccC-cEEEEEEec
Confidence 3567888887 599999999999999998 888888874
No 194
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.66 E-value=1.4e-06 Score=49.31 Aligned_cols=37 Identities=22% Similarity=0.332 Sum_probs=28.5
Q ss_pred CCceEEeecCCCCCeEEEEEeecCCCCC-cCeeeEEEE
Q psy7616 110 GFSITLEKVDRHQAGVYQCTATNGVGDP-VTVDMTLEV 146 (147)
Q Consensus 110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~-~~~~~~l~V 146 (147)
..+|+|.+++.+|+|.|+|.+.|.-+.. .+..+.|.|
T Consensus 79 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~~ 116 (116)
T cd05715 79 DASIVIHNLQFTDNGTYTCDVKNPPDIVGKPGEIRLRV 116 (116)
T ss_pred eeEEEEeeCCcccCEEEEEEEEeCCCCCCCccEEEEeC
Confidence 3568899999999999999999886543 234566654
No 195
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=98.66 E-value=7.9e-08 Score=49.23 Aligned_cols=30 Identities=17% Similarity=0.387 Sum_probs=23.7
Q ss_pred ceEEeecCCCCCeEEEEEeecCCCCCcCeeeEE
Q psy7616 112 SITLEKVDRHQAGVYQCTATNGVGDPVTVDMTL 144 (147)
Q Consensus 112 ~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l 144 (147)
.|.+.++ .|+|.|+|.|.|..|.. +.++.|
T Consensus 39 ~L~i~~~--~d~G~Y~C~A~N~~G~~-~~~a~l 68 (69)
T cd05739 39 VLELTNI--YESANYTCVAISSLGMI-EATAQV 68 (69)
T ss_pred EEEEecc--ccCeeEEEEEEeCCCEE-EEEEEE
Confidence 4666665 58999999999999987 656655
No 196
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=98.66 E-value=2.7e-08 Score=54.05 Aligned_cols=37 Identities=27% Similarity=0.414 Sum_probs=30.1
Q ss_pred cCCceEEeecC-CCCCeEEEEEeecCCCCCcCeeeEEE
Q psy7616 109 EGFSITLEKVD-RHQAGVYQCTATNGVGDPVTVDMTLE 145 (147)
Q Consensus 109 ~~~~~~l~~~~-~~d~G~Y~C~a~n~~g~~~~~~~~l~ 145 (147)
.++.|.+.++. .+|+|.|+|.|.|..|...+..+.|.
T Consensus 55 ~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l~ 92 (93)
T cd05849 55 VGGNLVINNPDKYKDAGRYVCIVSNIYGKVRSREATLS 92 (93)
T ss_pred ECCEEEECcCCcCCCCEEEEEEEEeCcceEEEccEEEe
Confidence 35678888875 69999999999999998866667664
No 197
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.64 E-value=9.6e-08 Score=52.36 Aligned_cols=38 Identities=26% Similarity=0.517 Sum_probs=33.5
Q ss_pred cCCceEEeecCCCCCeEEEEEeec-CCCCCcCeeeEEEEC
Q psy7616 109 EGFSITLEKVDRHQAGVYQCTATN-GVGDPVTVDMTLEVL 147 (147)
Q Consensus 109 ~~~~~~l~~~~~~d~G~Y~C~a~n-~~g~~~~~~~~l~V~ 147 (147)
...+|.|.+++.+|.|.|+|.+.| +.|.. +..+.|.||
T Consensus 61 ~daSi~i~nl~~~D~G~Y~C~v~t~P~g~~-~~~~~L~V~ 99 (99)
T cd05886 61 EDGTISLSRLELEDEGVYICEFATFPTGNR-ESQLNLTVY 99 (99)
T ss_pred CcceEEEcCCccccCEEEEEEEEeCCCCCe-EEEEEEEEC
Confidence 456799999999999999999999 67765 889999996
No 198
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.63 E-value=1.2e-06 Score=47.57 Aligned_cols=69 Identities=16% Similarity=0.298 Sum_probs=49.2
Q ss_pred CceEEeeCCeEEEEEeecCCCCCceEEEecCCCC---------CCCc-eee----eccceEEEeecCCCCeEEEEEeecC
Q psy7616 18 GQLTVRKGGTITLECKASGNPVPSIIWSKKDSSL---------PSGE-KSL----EGFSITLEKVDRHQAGVYQCTATNG 83 (147)
Q Consensus 18 ~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~---------~~~~-~~~----~~~~l~~~~~~~~~~g~y~C~~~~~ 83 (147)
+++.+..|+++.|.|...+.....+.|++.+..+ ...+ ... ....|.|..++..|.|.|.|.+...
T Consensus 5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~ 84 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYTD 84 (95)
T ss_pred CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEcc
Confidence 4678999999999999988766668888765321 1111 111 1225899999999999999998765
Q ss_pred CCC
Q psy7616 84 VGD 86 (147)
Q Consensus 84 ~~~ 86 (147)
...
T Consensus 85 p~~ 87 (95)
T cd05881 85 PPQ 87 (95)
T ss_pred cCe
Confidence 433
No 199
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=98.63 E-value=5.8e-08 Score=50.85 Aligned_cols=35 Identities=29% Similarity=0.530 Sum_probs=27.2
Q ss_pred CCceEEeecCCC----CCeEEEEEeecCCCCCcCeeeEE
Q psy7616 110 GFSITLEKVDRH----QAGVYQCTATNGVGDPVTVDMTL 144 (147)
Q Consensus 110 ~~~~~l~~~~~~----d~G~Y~C~a~n~~g~~~~~~~~l 144 (147)
++.+.|..++.+ |.|.|+|.|.|.+|...+..+.|
T Consensus 38 ~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~~ 76 (77)
T cd05874 38 TGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSNNIVI 76 (77)
T ss_pred CceEEEeccccCCCCCCCEEEEEEEEcCCCeEEeeEEEE
Confidence 566777777643 78999999999999886666655
No 200
>KOG3515|consensus
Probab=98.63 E-value=1.8e-07 Score=67.03 Aligned_cols=77 Identities=23% Similarity=0.376 Sum_probs=52.8
Q ss_pred EEeeCCeEEEEEeecCCCC-CceEEEecCCCCCCCceeeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEEEe
Q psy7616 21 TVRKGGTITLECKASGNPV-PSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97 (147)
Q Consensus 21 ~~~~g~~~~l~C~~~~~~~-~~v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~ 97 (147)
.+..|+++.|+|.+.+.|+ ..+.|++.+..+...........|......+..-+.|.|++.+..+.-....+.+.+.
T Consensus 18 ~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~a~ns~~~~~~~~~~l~v~ 95 (741)
T KOG3515|consen 18 GLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEHGRYATIADPTLVTTGDVRDTVAELNCRAFNSVGMPSRCPMILDVD 95 (741)
T ss_pred hhccCCcceeeeecCCCCCCcceEEEecCcccccccccccCCceeeecchhhhhhhhhhhhcccccCceecceeeccc
Confidence 7889999999999887754 5799999887665333334455666666666677788888887654433344444443
No 201
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.62 E-value=5.7e-07 Score=47.63 Aligned_cols=57 Identities=25% Similarity=0.508 Sum_probs=39.3
Q ss_pred EEEEEeecC-CCCCceEEEecCCCCCCCcee----------eeccceEEEeecCCCCeEEEEEeecCC
Q psy7616 28 ITLECKASG-NPVPSIIWSKKDSSLPSGEKS----------LEGFSITLEKVDRHQAGVYQCTATNGV 84 (147)
Q Consensus 28 ~~l~C~~~~-~~~~~v~w~~~~~~~~~~~~~----------~~~~~l~~~~~~~~~~g~y~C~~~~~~ 84 (147)
+.|.|.+.+ .|.+.+.|++++..+...... ...+.|.+......+.+.|.|.+.+..
T Consensus 2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~ 69 (82)
T cd05759 2 YNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEA 69 (82)
T ss_pred EEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCcc
Confidence 578999876 577899999998766432211 112345565555667789999998854
No 202
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=98.62 E-value=1.2e-07 Score=52.03 Aligned_cols=30 Identities=40% Similarity=0.722 Sum_probs=26.5
Q ss_pred cCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616 118 VDRHQAGVYQCTATNGVGDPVTVDMTLEVL 147 (147)
Q Consensus 118 ~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~ 147 (147)
++.+|+|.|+|.|.|..|...+..+.|.|.
T Consensus 71 ~~~~D~G~Y~C~a~N~~G~~~s~~~~l~v~ 100 (100)
T cd07693 71 KGRSDEGVYVCVAHNSLGEAVSRNASLEVA 100 (100)
T ss_pred CCcCcCEEEEEEEEccccceecceEEEEeC
Confidence 368999999999999999966889999874
No 203
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=98.62 E-value=9.6e-08 Score=50.89 Aligned_cols=38 Identities=18% Similarity=0.385 Sum_probs=31.2
Q ss_pred CCceEEeecCCCCCeEEEEEeecCCCCC-cCeeeEEEEC
Q psy7616 110 GFSITLEKVDRHQAGVYQCTATNGVGDP-VTVDMTLEVL 147 (147)
Q Consensus 110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~-~~~~~~l~V~ 147 (147)
...|.+.+++.+|+|.|+|.|.|..+.. .+..+.|+|+
T Consensus 45 ~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i~V~ 83 (84)
T cd05861 45 RSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNITVH 83 (84)
T ss_pred EEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEEEEe
Confidence 4578889999999999999999987622 3777888874
No 204
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.61 E-value=8.3e-07 Score=49.56 Aligned_cols=65 Identities=20% Similarity=0.434 Sum_probs=47.7
Q ss_pred ceEEeeCCeEEEEEeecCCCCCceEEEecCCC--C-------------CCCce-ee-----eccceEEEeecCCCCeEEE
Q psy7616 19 QLTVRKGGTITLECKASGNPVPSIIWSKKDSS--L-------------PSGEK-SL-----EGFSITLEKVDRHQAGVYQ 77 (147)
Q Consensus 19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~--~-------------~~~~~-~~-----~~~~l~~~~~~~~~~g~y~ 77 (147)
.+.+..|+++.|.|...+.+...+.|++.... . ..... .. ....|.|.+++.+|+|.|.
T Consensus 7 ~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~ 86 (109)
T cd04983 7 SLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSAVYF 86 (109)
T ss_pred ceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCEEEE
Confidence 56889999999999988767778999985421 0 00111 11 2346899999999999999
Q ss_pred EEeecC
Q psy7616 78 CTATNG 83 (147)
Q Consensus 78 C~~~~~ 83 (147)
|.+.+.
T Consensus 87 C~~~~~ 92 (109)
T cd04983 87 CALSES 92 (109)
T ss_pred EEEecC
Confidence 998764
No 205
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.59 E-value=5e-07 Score=50.60 Aligned_cols=37 Identities=22% Similarity=0.461 Sum_probs=26.6
Q ss_pred CCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616 110 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 146 (147)
Q Consensus 110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V 146 (147)
..+|.|.+++.+|+|.|.|.+.............|.|
T Consensus 78 ~~sL~i~~l~~~DsG~Y~C~v~~~~~~~~~~~~~L~V 114 (114)
T PF07686_consen 78 NFSLTIKNLQPSDSGTYFCQVSTSNEQSFGNGTKLTV 114 (114)
T ss_dssp EEEEEESSESGGGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred eEEEEECCCCcCcCEEEEEEEEECCCCEECCcEEEEC
Confidence 3468889999999999999998873222344555554
No 206
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=98.58 E-value=1.6e-07 Score=50.89 Aligned_cols=29 Identities=24% Similarity=0.440 Sum_probs=26.4
Q ss_pred cCCceEEeecCCCCCeEEEEEeecCCCCC
Q psy7616 109 EGFSITLEKVDRHQAGVYQCTATNGVGDP 137 (147)
Q Consensus 109 ~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~ 137 (147)
.+..|.+.++..+|+|.|+|.|.|..|..
T Consensus 50 ~~~~L~I~~v~~~DsG~YtC~~~n~~~~~ 78 (92)
T cd05757 50 KGSKLLIQNVTEEDAGNYTCKLTFTHNGK 78 (92)
T ss_pred cCCEEEEeeCChhhCEEEEEEEEecCCCE
Confidence 56789999999999999999999998776
No 207
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.57 E-value=1.3e-06 Score=47.50 Aligned_cols=70 Identities=27% Similarity=0.385 Sum_probs=49.3
Q ss_pred CceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCc-----eeeeccceEEEeecCCCCeEEEEEeec
Q psy7616 9 PSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGE-----KSLEGFSITLEKVDRHQAGVYQCTATN 82 (147)
Q Consensus 9 p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~g~y~C~~~~ 82 (147)
|.+...+.. .+..|++++|.|.... ....+.|++.+....... .......+.|.+++..|+|.|.|....
T Consensus 2 P~l~a~p~~---vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~~ 76 (94)
T cd05711 2 PFLSAHPSP---VVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGSY 76 (94)
T ss_pred CEEEecCCC---ccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEEC
Confidence 555555532 7889999999998755 455799999876533211 011234678899999999999998753
No 208
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=98.55 E-value=1.3e-07 Score=50.57 Aligned_cols=37 Identities=27% Similarity=0.356 Sum_probs=31.5
Q ss_pred CCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616 110 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 147 (147)
Q Consensus 110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~ 147 (147)
...|.+.+++.+|+|.|+|.|.|..|.. .....|.|+
T Consensus 49 ~s~L~I~~~~~~DsG~Y~C~a~n~~~~~-~~~t~~~V~ 85 (86)
T cd05862 49 SSTLTIENVTLSDLGRYTCTASSGQMIA-KNSTIVIVH 85 (86)
T ss_pred eeEEEEecCCcccCEEEEEEEeecceEe-cccEEEEEe
Confidence 3468889999999999999999998877 777777774
No 209
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=98.54 E-value=1.7e-07 Score=49.10 Aligned_cols=36 Identities=22% Similarity=0.421 Sum_probs=26.8
Q ss_pred cCCceEEeecCC----CCCeEEEEEeecCCCCCcCeeeEE
Q psy7616 109 EGFSITLEKVDR----HQAGVYQCTATNGVGDPVTVDMTL 144 (147)
Q Consensus 109 ~~~~~~l~~~~~----~d~G~Y~C~a~n~~g~~~~~~~~l 144 (147)
.++.|.+..++. .|+|.|+|.|.|.+|...+..+.|
T Consensus 37 ~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~~ 76 (77)
T cd05875 37 RSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSNKILL 76 (77)
T ss_pred CCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEEEEEE
Confidence 355777776642 469999999999999886665554
No 210
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=98.53 E-value=1.1e-07 Score=49.60 Aligned_cols=32 Identities=19% Similarity=0.474 Sum_probs=27.0
Q ss_pred CCceEEeecCCCCCeEEEEEeecCCCCCcCeee
Q psy7616 110 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDM 142 (147)
Q Consensus 110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 142 (147)
...|.+.+++.+|+|.|+|.|.|..|.. +.++
T Consensus 43 ~~~L~I~~~~~~DsG~Y~C~a~N~~g~~-~~~~ 74 (76)
T cd05895 43 SSELQISKASLADNGEYKCMVSSKLGND-SVTA 74 (76)
T ss_pred EEEEEECcCCcccCEEEEEEEEeCCCce-eEEE
Confidence 3568889999999999999999999976 4444
No 211
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=98.51 E-value=1.6e-07 Score=48.81 Aligned_cols=33 Identities=24% Similarity=0.466 Sum_probs=27.3
Q ss_pred CCceEEeecCCCCCeEEEEEeecCCCCCcCeeeE
Q psy7616 110 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMT 143 (147)
Q Consensus 110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~ 143 (147)
...|.+.+++.+|+|.|+|.|.|..|.. +..++
T Consensus 42 ~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~ 74 (75)
T cd05750 42 NSELQINKAKLADSGEYTCVVENILGND-TVTAN 74 (75)
T ss_pred eEEEEEccCCcccCeEEEEEEEEcCCce-eEEEe
Confidence 3467889999999999999999999987 54443
No 212
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=98.49 E-value=2.3e-07 Score=49.98 Aligned_cols=38 Identities=24% Similarity=0.348 Sum_probs=32.0
Q ss_pred CCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616 110 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 147 (147)
Q Consensus 110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~ 147 (147)
...|.|.+++.+|+|.|+|.|.|..+.....+++|.|+
T Consensus 50 ~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~~l~V~ 87 (89)
T cd04979 50 EDGLLIRSVSPADAGVYTCQSVEHGFKQTLATYSLNVL 87 (89)
T ss_pred CCCEEEccCCHHHCEEEEEEEecCccceeEeEEEEEEe
Confidence 34588899999999999999998876666888888885
No 213
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=98.49 E-value=2.3e-07 Score=50.16 Aligned_cols=32 Identities=31% Similarity=0.572 Sum_probs=25.7
Q ss_pred CCceEEeecCC-CCCeEEEEEeecCCCCCcCee
Q psy7616 110 GFSITLEKVDR-HQAGVYQCTATNGVGDPVTVD 141 (147)
Q Consensus 110 ~~~~~l~~~~~-~d~G~Y~C~a~n~~g~~~~~~ 141 (147)
+..|.+.++.. +|+|.|+|.|.|..|...+..
T Consensus 57 ~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~S~~ 89 (91)
T cd04967 57 GGNLVISNPSKAKDAGRYQCLASNIVGTVLSRE 89 (91)
T ss_pred CCEEEEecCCccCCCEEEEEEEEcCCCEEEecc
Confidence 45677777764 999999999999999775544
No 214
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=98.47 E-value=5.8e-07 Score=47.48 Aligned_cols=34 Identities=15% Similarity=0.274 Sum_probs=25.9
Q ss_pred cCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEE
Q psy7616 109 EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTL 144 (147)
Q Consensus 109 ~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l 144 (147)
.+..|.+..+ .|.|.|.|.|+|.+|...+..+.|
T Consensus 47 ~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s~~a~~ 80 (81)
T cd05749 47 SPSVLNVPGL--NETSKFSCEAHNAKGVTTSRTGTV 80 (81)
T ss_pred CCCEEEEccc--cCCeEEEEEEEeccCcEEeeeEEe
Confidence 3455666665 589999999999999886666665
No 215
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.45 E-value=2.8e-07 Score=48.99 Aligned_cols=38 Identities=16% Similarity=0.365 Sum_probs=33.5
Q ss_pred cCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616 109 EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 146 (147)
Q Consensus 109 ~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V 146 (147)
.+..+.+.+++.+|+|.|+|.|.|..|...|..+.|+|
T Consensus 46 ~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s~~~~i~~ 83 (83)
T cd05753 46 SNSNLSIPQATLSDSGSYHCSGIIGSYDYSSEPVSITV 83 (83)
T ss_pred CCceEEECccCHHHCEEEEEEEEeCCceecCCCEEEEC
Confidence 35678889999999999999999999888788888876
No 216
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.45 E-value=1.5e-06 Score=48.19 Aligned_cols=65 Identities=26% Similarity=0.572 Sum_probs=46.0
Q ss_pred EEeeCCeEEEEEeecCC-CCCceEEEecCCC-CC-----------------CCce-ee-----eccceEEEeecCCCCeE
Q psy7616 21 TVRKGGTITLECKASGN-PVPSIIWSKKDSS-LP-----------------SGEK-SL-----EGFSITLEKVDRHQAGV 75 (147)
Q Consensus 21 ~~~~g~~~~l~C~~~~~-~~~~v~w~~~~~~-~~-----------------~~~~-~~-----~~~~l~~~~~~~~~~g~ 75 (147)
.+..|+++.|.|..... ....+.|++.... .. .... .. ....|.|.+++..|+|.
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~ 81 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV 81 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence 56789999999998765 5667999985431 00 0000 11 23378999999999999
Q ss_pred EEEEeecCCC
Q psy7616 76 YQCTATNGVG 85 (147)
Q Consensus 76 y~C~~~~~~~ 85 (147)
|.|.+.+..+
T Consensus 82 Y~C~v~~~~~ 91 (105)
T cd00099 82 YYCAVSLSGG 91 (105)
T ss_pred EEEEEecCCC
Confidence 9999987553
No 217
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.44 E-value=7.3e-07 Score=48.81 Aligned_cols=73 Identities=25% Similarity=0.430 Sum_probs=50.0
Q ss_pred eCCeEEEEEeecC-CCCCceEEEecCCCCC--------CC---------ce--e-eeccceEEEeecCCCCeEEEEEeec
Q psy7616 24 KGGTITLECKASG-NPVPSIIWSKKDSSLP--------SG---------EK--S-LEGFSITLEKVDRHQAGVYQCTATN 82 (147)
Q Consensus 24 ~g~~~~l~C~~~~-~~~~~v~w~~~~~~~~--------~~---------~~--~-~~~~~l~~~~~~~~~~g~y~C~~~~ 82 (147)
.|++++|+|.... .....+.|++....+. .. .+ . ....+|.|.+++.+|+|.|.|.+..
T Consensus 3 ~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~~ 82 (97)
T cd05775 3 LGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEINT 82 (97)
T ss_pred cCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEEc
Confidence 6899999998754 3455689998532110 00 00 1 1235799999999999999999988
Q ss_pred CCCCceEEeEEEEE
Q psy7616 83 GVGDPVTVDMTLEV 96 (147)
Q Consensus 83 ~~~~~~~~~~~l~v 96 (147)
..+......+.|.|
T Consensus 83 ~~~~~~~~~f~L~v 96 (97)
T cd05775 83 KNGVTITKEFTLHI 96 (97)
T ss_pred CCCCeEEEEEEEEe
Confidence 77665566666654
No 218
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.44 E-value=4.4e-07 Score=49.27 Aligned_cols=37 Identities=16% Similarity=0.275 Sum_probs=29.0
Q ss_pred CCceEEeecCCCCCeEEEEEeecCCCCC---cCeeeEEEE
Q psy7616 110 GFSITLEKVDRHQAGVYQCTATNGVGDP---VTVDMTLEV 146 (147)
Q Consensus 110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~---~~~~~~l~V 146 (147)
+..|.+.++..+|+|.|+|.|.+.+|.. .+..+.|.|
T Consensus 54 ~~~L~I~~v~~~D~G~YtC~~~~~~~g~~y~vtr~~~l~v 93 (95)
T cd05897 54 STYLHIIDVSLNDSGYYTCKLQFTHEGKKYNITRIIKLRI 93 (95)
T ss_pred CCEEEEEEcChhhCEEEEEEEEEeeCCEEEEEEEEEEEEE
Confidence 3578899999999999999999998654 344555554
No 219
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.43 E-value=3.8e-06 Score=46.16 Aligned_cols=35 Identities=17% Similarity=0.307 Sum_probs=27.5
Q ss_pred cceEEEeecCCCCeEEEEEeecCCCCceEEeEEEEE
Q psy7616 61 FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96 (147)
Q Consensus 61 ~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v 96 (147)
.+|.|.+++..|+|.|.|.+.+..+. ....+.|.|
T Consensus 65 ~sL~I~~v~~~D~G~Y~C~v~~~~~~-~~~~i~l~v 99 (100)
T cd05713 65 VALRIHNVRASDEGLYTCFFQSDGFY-EEATVELKV 99 (100)
T ss_pred EEEEEEcCChhhCEEEEEEEecCCcE-EEEEEEEEE
Confidence 46999999999999999999886554 356665554
No 220
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.42 E-value=7.4e-06 Score=43.17 Aligned_cols=70 Identities=20% Similarity=0.283 Sum_probs=43.7
Q ss_pred EEEEEeecC-CCCCceEEEecCCCCCCCce--------eeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEEEe
Q psy7616 28 ITLECKASG-NPVPSIIWSKKDSSLPSGEK--------SLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97 (147)
Q Consensus 28 ~~l~C~~~~-~~~~~v~w~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~ 97 (147)
+.|.|.+.+ .|.+.|.|++++.++..... ....+.|.|..-...|...|.|++.++.-........|.|.
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~ 80 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQ 80 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEE
Confidence 578998755 47788999999988754321 11233455544434444569999998664434455555443
No 221
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.41 E-value=3.4e-06 Score=47.17 Aligned_cols=36 Identities=28% Similarity=0.556 Sum_probs=30.0
Q ss_pred CCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616 110 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 146 (147)
Q Consensus 110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V 146 (147)
..+|.|.+++.+|+|.|.|.+....... +..+.|.|
T Consensus 71 ~asL~i~nv~~~D~G~Y~C~v~~g~~~~-~~~v~L~V 106 (110)
T cd05902 71 NASLVLSRLRYSDSGTYRCEVVLGINDE-QDTVPLEV 106 (110)
T ss_pred eEEEEECCCCHHHCEEEEEEEEECCccc-EEEEEEEE
Confidence 4568889999999999999999866544 77888876
No 222
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.40 E-value=6.9e-06 Score=46.01 Aligned_cols=73 Identities=25% Similarity=0.491 Sum_probs=47.5
Q ss_pred eCCeEEEEEeecCCC----------CCceEEEecC--CCC------------CC---Cce-e------eeccceEEEeec
Q psy7616 24 KGGTITLECKASGNP----------VPSIIWSKKD--SSL------------PS---GEK-S------LEGFSITLEKVD 69 (147)
Q Consensus 24 ~g~~~~l~C~~~~~~----------~~~v~w~~~~--~~~------------~~---~~~-~------~~~~~l~~~~~~ 69 (147)
.|++++|+|.....+ ...+.|++.. ... .. ++. . .....|.|.+++
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~ 80 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR 80 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence 378999999875432 2569999852 110 00 000 1 123469999999
Q ss_pred CCCCeEEEEEeecCCCCceEEeEEEEEe
Q psy7616 70 RHQAGVYQCTATNGVGDPVTVDMTLEVL 97 (147)
Q Consensus 70 ~~~~g~y~C~~~~~~~~~~~~~~~l~v~ 97 (147)
.+|+|.|.|.+....... .+.+.|.|.
T Consensus 81 ~sD~G~Y~C~v~~~~~~~-~~~v~l~V~ 107 (110)
T cd05878 81 SSDSGVYRCEVMHGIEDE-QDTVPLEVT 107 (110)
T ss_pred hhhCEEEEEEEEeCCCcc-eEEEEEEEE
Confidence 999999999998755443 566666654
No 223
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.38 E-value=2.1e-06 Score=45.06 Aligned_cols=34 Identities=21% Similarity=0.420 Sum_probs=27.4
Q ss_pred cCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616 109 EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 146 (147)
Q Consensus 109 ~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V 146 (147)
.+..+.+.++ .+|+|.|+|.|.|. ..+..++|+|
T Consensus 45 ~~~~l~i~~~-~~dsG~Y~C~a~~~---~~S~~v~l~V 78 (78)
T cd05752 45 TTNSYRIRAA-NNDSGEYRCQTQGS---SLSDPVHLEV 78 (78)
T ss_pred cCCeEEEeec-ccCCEEeEEECCCC---cCCCCEEEeC
Confidence 4567888999 99999999999986 2366777765
No 224
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.38 E-value=9.3e-06 Score=44.42 Aligned_cols=72 Identities=28% Similarity=0.444 Sum_probs=46.6
Q ss_pred CCeEEEEEeecCCCC-CceEEEecCCCCC---------C------C--ce------eeeccceEEEeecCCCCeEEEEEe
Q psy7616 25 GGTITLECKASGNPV-PSIIWSKKDSSLP---------S------G--EK------SLEGFSITLEKVDRHQAGVYQCTA 80 (147)
Q Consensus 25 g~~~~l~C~~~~~~~-~~v~w~~~~~~~~---------~------~--~~------~~~~~~l~~~~~~~~~~g~y~C~~ 80 (147)
|++++|.|....... ..+.|++.....+ . . .+ ......|.|.+++.+|+|.|.|.+
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~ 80 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF 80 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence 678999998654332 3599998532110 0 0 00 012346999999999999999998
Q ss_pred ecCCCCceEEeEEEEE
Q psy7616 81 TNGVGDPVTVDMTLEV 96 (147)
Q Consensus 81 ~~~~~~~~~~~~~l~v 96 (147)
........+..+.|.|
T Consensus 81 ~~~p~g~~~~~~~L~v 96 (97)
T cd05846 81 NTFPDGSKSGTMCLTV 96 (97)
T ss_pred EeCCCCCeeeEEEEEE
Confidence 8655444466666655
No 225
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.38 E-value=7.3e-06 Score=44.81 Aligned_cols=71 Identities=23% Similarity=0.376 Sum_probs=44.8
Q ss_pred CeEEEEEeecCCC---CCceEEEecCCC---------------CCCC--ce--ee----eccceEEEeecCCCCeEEEEE
Q psy7616 26 GTITLECKASGNP---VPSIIWSKKDSS---------------LPSG--EK--SL----EGFSITLEKVDRHQAGVYQCT 79 (147)
Q Consensus 26 ~~~~l~C~~~~~~---~~~v~w~~~~~~---------------~~~~--~~--~~----~~~~l~~~~~~~~~~g~y~C~ 79 (147)
++++|.|...... ...+.|++.... .... .+ .. ....|.|.+++..|+|.|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 80 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE 80 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence 4678999876543 346999986531 0000 00 01 245799999999999999999
Q ss_pred eecCCCCceEEeEEEEE
Q psy7616 80 ATNGVGDPVTVDMTLEV 96 (147)
Q Consensus 80 ~~~~~~~~~~~~~~l~v 96 (147)
+...........+.|.|
T Consensus 81 v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 81 FATFPQGNRQKVTTLTV 97 (98)
T ss_pred EEeCCCCcEEEEEEEEe
Confidence 87533332356665554
No 226
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.38 E-value=6.4e-06 Score=45.12 Aligned_cols=72 Identities=24% Similarity=0.405 Sum_probs=47.5
Q ss_pred ceEEcCCCCceEEeeCCeEEEEEeecCC-CCCc--eEEEecCCCCCCCcee-------eeccceEEEeecCCCCe-EEEE
Q psy7616 10 SIRTSPSNGQLTVRKGGTITLECKASGN-PVPS--IIWSKKDSSLPSGEKS-------LEGFSITLEKVDRHQAG-VYQC 78 (147)
Q Consensus 10 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~--v~w~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~g-~y~C 78 (147)
.+.+.+.+. .+..|+.++|.|.+.+. |... +.|++++..+...... .....+.+ .+.+.|.| .|.|
T Consensus 3 ~V~l~~~p~--~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~-~~~r~D~g~~~sC 79 (100)
T cd05755 3 SVELSPLPS--WQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITI-TVDREDHGANFSC 79 (100)
T ss_pred eEEEecCCC--cccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEE-ecchhhCCcEEEE
Confidence 455555544 67899999999998764 6665 7999999877542211 12234444 34566666 6999
Q ss_pred EeecCC
Q psy7616 79 TATNGV 84 (147)
Q Consensus 79 ~~~~~~ 84 (147)
++....
T Consensus 80 ~A~l~l 85 (100)
T cd05755 80 ETELDL 85 (100)
T ss_pred EEEecc
Confidence 998754
No 227
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.38 E-value=4.5e-06 Score=46.72 Aligned_cols=64 Identities=23% Similarity=0.517 Sum_probs=46.1
Q ss_pred ceEEeeCCeEEEEEeecCCCCCceEEEecCC--CCC-----------------CCce-e----eeccceEEEeecCCCCe
Q psy7616 19 QLTVRKGGTITLECKASGNPVPSIIWSKKDS--SLP-----------------SGEK-S----LEGFSITLEKVDRHQAG 74 (147)
Q Consensus 19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~--~~~-----------------~~~~-~----~~~~~l~~~~~~~~~~g 74 (147)
.+.+..|++++|.|...+ +.+.+.|++... .+. .... . .....|.|.+++.+|+|
T Consensus 7 ~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~Dsg 85 (110)
T cd05899 7 YLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPEDSA 85 (110)
T ss_pred ceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChhhCE
Confidence 568899999999999877 667899998542 110 0000 0 12346889999999999
Q ss_pred EEEEEeecC
Q psy7616 75 VYQCTATNG 83 (147)
Q Consensus 75 ~y~C~~~~~ 83 (147)
.|.|.+...
T Consensus 86 ~Y~Ca~~~~ 94 (110)
T cd05899 86 VYLCASSLG 94 (110)
T ss_pred EEEEEeeCC
Confidence 999998653
No 228
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.37 E-value=4e-05 Score=46.30 Aligned_cols=82 Identities=17% Similarity=0.321 Sum_probs=56.9
Q ss_pred ceEEeeCCeEEEEEeec-CCCCCceEEEecCCCCC----------CC--cee------eeccceEEEeecCCCCeEEEEE
Q psy7616 19 QLTVRKGGTITLECKAS-GNPVPSIIWSKKDSSLP----------SG--EKS------LEGFSITLEKVDRHQAGVYQCT 79 (147)
Q Consensus 19 ~~~~~~g~~~~l~C~~~-~~~~~~v~w~~~~~~~~----------~~--~~~------~~~~~l~~~~~~~~~~g~y~C~ 79 (147)
...+.+|+++.|.|... +...+.+.|++....+. .. .+. .....+.|++++.+|+|.|.|.
T Consensus 24 ~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~ 103 (189)
T PHA02987 24 KITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCI 103 (189)
T ss_pred EEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEE
Confidence 34778999999999974 54577899999643221 00 011 1345789999999999999999
Q ss_pred eecCCCC-ceEEeEEEEEeeee
Q psy7616 80 ATNGVGD-PVTVDMTLEVLCKI 100 (147)
Q Consensus 80 ~~~~~~~-~~~~~~~l~v~~~~ 100 (147)
....... ..+....|.|....
T Consensus 104 F~tfp~G~~~~gt~CLtVt~~~ 125 (189)
T PHA02987 104 FNTLLSKNNEKGVVCLNVTTDS 125 (189)
T ss_pred EEecCCCCCceeEEEEEEEchh
Confidence 8764333 44667777776543
No 229
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.37 E-value=5.9e-06 Score=45.95 Aligned_cols=65 Identities=26% Similarity=0.489 Sum_probs=44.7
Q ss_pred ceEEeeCCeEEEEEeecCCC-CCceEEEecCC--CCC----------C---Cce-ee---eccceEEEeecCCCCeEEEE
Q psy7616 19 QLTVRKGGTITLECKASGNP-VPSIIWSKKDS--SLP----------S---GEK-SL---EGFSITLEKVDRHQAGVYQC 78 (147)
Q Consensus 19 ~~~~~~g~~~~l~C~~~~~~-~~~v~w~~~~~--~~~----------~---~~~-~~---~~~~l~~~~~~~~~~g~y~C 78 (147)
.+.+..|++++|.|...+.. ...+.|++... ... . ... .. ....|.|.+++.+|+|.|.|
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsg~Y~C 88 (106)
T cd04980 9 TLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDAAVYYC 88 (106)
T ss_pred cEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHCEEEEE
Confidence 55788999999999986544 56799997431 110 0 000 10 12358899999999999999
Q ss_pred EeecC
Q psy7616 79 TATNG 83 (147)
Q Consensus 79 ~~~~~ 83 (147)
.+.+.
T Consensus 89 a~~~~ 93 (106)
T cd04980 89 QQYGT 93 (106)
T ss_pred EEeCC
Confidence 88653
No 230
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.36 E-value=7.9e-07 Score=48.66 Aligned_cols=38 Identities=21% Similarity=0.462 Sum_probs=34.6
Q ss_pred CCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616 110 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 147 (147)
Q Consensus 110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~ 147 (147)
..+|.+.+++.+|+|.|.|.+.+..|......+.|.||
T Consensus 60 ~~sL~I~~~~~~DsG~Y~c~v~~~~~~~~~~~f~L~vy 97 (97)
T cd05775 60 DYSLQISNLKMEDAGSYRAEINTKNGVTITKEFTLHIY 97 (97)
T ss_pred ceeEEECCCchHHCEEEEEEEEcCCCCeEEEEEEEEeC
Confidence 46799999999999999999999988888888999986
No 231
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=98.33 E-value=9.8e-07 Score=46.84 Aligned_cols=35 Identities=26% Similarity=0.500 Sum_probs=30.6
Q ss_pred CceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616 111 FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 146 (147)
Q Consensus 111 ~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V 146 (147)
..+.+.++..+|.|.|+|.+.|..|.. +.+++|+|
T Consensus 51 ~~l~i~~~~~~d~g~Y~C~~~n~~g~~-~~~~~l~v 85 (85)
T cd05729 51 WTLILESVVPSDSGKYTCIVENKYGSI-NHTYKVDV 85 (85)
T ss_pred EEEEEeECCcccCEEEEEEEEECCceE-EEEEEEeC
Confidence 357788999999999999999999987 77888875
No 232
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.31 E-value=1.3e-05 Score=45.07 Aligned_cols=37 Identities=32% Similarity=0.601 Sum_probs=28.7
Q ss_pred ccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEEEe
Q psy7616 60 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97 (147)
Q Consensus 60 ~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~ 97 (147)
..+|.|.+++..|+|.|.|.+....... ...+.|.|.
T Consensus 78 ~asL~i~~v~~sD~G~Y~C~V~~g~~~~-~~~v~L~V~ 114 (117)
T cd05901 78 DASLTIVKLRASDAGVYRCEVMHGIEDT-QDTVSLDVS 114 (117)
T ss_pred ceEEEEcccccccCEEEEEEEEECCccc-EEEEEEEEE
Confidence 4579999999999999999998766553 556666554
No 233
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.31 E-value=2e-06 Score=47.32 Aligned_cols=37 Identities=19% Similarity=0.391 Sum_probs=31.8
Q ss_pred CCceEEeecCCCCCeEEEEEeec-CCCCCcCeeeEEEEC
Q psy7616 110 GFSITLEKVDRHQAGVYQCTATN-GVGDPVTVDMTLEVL 147 (147)
Q Consensus 110 ~~~~~l~~~~~~d~G~Y~C~a~n-~~g~~~~~~~~l~V~ 147 (147)
..+|+|.+++.+|+|.|.|.+.+ +.|.. +..+.|.|+
T Consensus 63 ~~sL~I~nv~~sD~GtY~C~v~~~p~g~~-~~~~~L~V~ 100 (100)
T cd05888 63 DGALILRNAVQADEGKYKCRVITFPAGNF-EAELVLTVW 100 (100)
T ss_pred ceEEEEecCccccceEEEEEEEeCCCCCe-eeEEEEEeC
Confidence 55699999999999999999998 56765 888999885
No 234
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.30 E-value=2.5e-06 Score=46.46 Aligned_cols=38 Identities=34% Similarity=0.482 Sum_probs=32.0
Q ss_pred cCCceEEeecCCCCCeEEEEEeecC-CCCCcCeeeEEEEC
Q psy7616 109 EGFSITLEKVDRHQAGVYQCTATNG-VGDPVTVDMTLEVL 147 (147)
Q Consensus 109 ~~~~~~l~~~~~~d~G~Y~C~a~n~-~g~~~~~~~~l~V~ 147 (147)
...+|.|.+++.+|.|.|+|.+.+- .|+. +.+..|+||
T Consensus 58 ~d~sl~i~nv~~~D~G~Y~C~v~tfP~G~~-~~~~~l~~~ 96 (96)
T cd05887 58 LDATIMLENVGFSDIGVYICKAVTFPLGNT-QSSTTVTVL 96 (96)
T ss_pred CccEEEEeCCCccccEEEEEEEEeCCCCCe-eEEEEEEEC
Confidence 3567999999999999999998555 5766 889999986
No 235
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.30 E-value=1.8e-05 Score=43.52 Aligned_cols=37 Identities=16% Similarity=0.302 Sum_probs=28.2
Q ss_pred ccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEEE
Q psy7616 60 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96 (147)
Q Consensus 60 ~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v 96 (147)
...|.|.+++.+|+|.|.|.+.+......+..+.|.|
T Consensus 63 ~~sL~I~nv~~sD~GtY~C~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 63 DGALILRNAVQADEGKYKCRVITFPAGNFEAELVLTV 99 (100)
T ss_pred ceEEEEecCccccceEEEEEEEeCCCCCeeeEEEEEe
Confidence 3469999999999999999998744443466666654
No 236
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.29 E-value=3.1e-05 Score=42.50 Aligned_cols=36 Identities=22% Similarity=0.352 Sum_probs=28.7
Q ss_pred cceEEEeecCCCCeEEEEEeecCCCCceEEeEEEEE
Q psy7616 61 FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96 (147)
Q Consensus 61 ~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v 96 (147)
.+|.|.+++..|.|.|.|.+.+......+..+.|.|
T Consensus 63 aSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 63 GTISLSRLELEDEGVYICEFATFPTGNRESQLNLTV 98 (99)
T ss_pred ceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEE
Confidence 578999999999999999999944333467777765
No 237
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=98.29 E-value=9.4e-07 Score=47.12 Aligned_cols=35 Identities=29% Similarity=0.384 Sum_probs=29.1
Q ss_pred cCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEE
Q psy7616 109 EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTL 144 (147)
Q Consensus 109 ~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l 144 (147)
.+..+.+.+++.+|+|.|+|.|.|..|.. +..+.|
T Consensus 50 ~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~-~~~~~l 84 (85)
T cd05754 50 FNGILTIRNVQLSDAGTYVCTGSNMLDTD-EATATL 84 (85)
T ss_pred cCCEEEECCCCHHHCEEEEEEEeccCCeE-eEEEEE
Confidence 35679999999999999999999999977 544443
No 238
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.29 E-value=1.3e-06 Score=48.03 Aligned_cols=35 Identities=17% Similarity=0.320 Sum_probs=30.5
Q ss_pred CceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616 111 FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 146 (147)
Q Consensus 111 ~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V 146 (147)
.+|.|.+++.+|+|.|+|.+.|..+.. +..+.|.|
T Consensus 65 ~sL~I~~v~~~D~G~Y~C~v~~~~~~~-~~~i~l~v 99 (100)
T cd05713 65 VALRIHNVRASDEGLYTCFFQSDGFYE-EATVELKV 99 (100)
T ss_pred EEEEEEcCChhhCEEEEEEEecCCcEE-EEEEEEEE
Confidence 468899999999999999999987765 77888877
No 239
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=98.27 E-value=1.7e-06 Score=46.76 Aligned_cols=37 Identities=32% Similarity=0.560 Sum_probs=29.7
Q ss_pred CCceEEeecCCCCCeEEEEEeec-CCCCCcCeeeEEEEC
Q psy7616 110 GFSITLEKVDRHQAGVYQCTATN-GVGDPVTVDMTLEVL 147 (147)
Q Consensus 110 ~~~~~l~~~~~~d~G~Y~C~a~n-~~g~~~~~~~~l~V~ 147 (147)
+..|.|.+++.+|+|.|+|.|.| ..+.. ...++|.|+
T Consensus 52 ~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~-~~~~~l~v~ 89 (91)
T cd05871 52 ERGLLLRSLQRSDAGVYTCTAVEHSFSQT-LAKYTLHVI 89 (91)
T ss_pred cCeEEEeeCChhHCEEEEEEEEccCCeEE-EEEEEEEEe
Confidence 45588999999999999999985 55545 557888874
No 240
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.25 E-value=2.1e-06 Score=47.06 Aligned_cols=38 Identities=29% Similarity=0.374 Sum_probs=31.2
Q ss_pred ccCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616 108 LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 146 (147)
Q Consensus 108 ~~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V 146 (147)
..+..|.+.++..+|+|.|+|.+.|...-. ...++|+|
T Consensus 67 ~~~~~Lwf~Pa~~eDSG~Y~C~~rN~t~C~-~~~i~l~V 104 (104)
T cd05896 67 KEEDSIWFRPAELQDSGLYTCVLRNSTYCM-KVSMSLTV 104 (104)
T ss_pred EeCCEEEEEeCChhhCeEEEEEECCCCcce-EEEEEEEC
Confidence 457789999999999999999999997555 66666665
No 241
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.24 E-value=1.8e-06 Score=47.28 Aligned_cols=32 Identities=28% Similarity=0.504 Sum_probs=27.4
Q ss_pred ceEEeecCCCC-CeEEEEEeecCCCCCcCeeeEE
Q psy7616 112 SITLEKVDRHQ-AGVYQCTATNGVGDPVTVDMTL 144 (147)
Q Consensus 112 ~~~l~~~~~~d-~G~Y~C~a~n~~g~~~~~~~~l 144 (147)
.|.+.+++.+| .|.|+|.|.|..|.. ...++|
T Consensus 65 ~L~I~~v~~~d~~G~Y~C~A~N~~G~~-~~~~~L 97 (98)
T cd05758 65 TLTISNTQESDFQTSYNCTAWNSFGSG-TAIISL 97 (98)
T ss_pred EEEECCccccccceeEEEEEEcCCCcc-cEEEEe
Confidence 68889999955 899999999999988 667766
No 242
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.24 E-value=3e-06 Score=46.38 Aligned_cols=37 Identities=24% Similarity=0.390 Sum_probs=31.4
Q ss_pred CCceEEeecCCCCCeEEEEEeec-CCCCCcCeeeEEEEC
Q psy7616 110 GFSITLEKVDRHQAGVYQCTATN-GVGDPVTVDMTLEVL 147 (147)
Q Consensus 110 ~~~~~l~~~~~~d~G~Y~C~a~n-~~g~~~~~~~~l~V~ 147 (147)
..+|.|.+++.+|+|.|.|.+.+ +.|.. ...++|.||
T Consensus 61 ~~sL~I~~v~~~D~G~Y~C~v~~~~~g~~-~~~~~l~V~ 98 (98)
T cd05718 61 DATISISNLRLEDEGNYICEFATFPQGNR-QKVTTLTVL 98 (98)
T ss_pred ceEEEEccCCcccCEEEEEEEEeCCCCcE-EEEEEEEeC
Confidence 45789999999999999999976 55665 888999986
No 243
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.22 E-value=2.8e-05 Score=42.37 Aligned_cols=37 Identities=30% Similarity=0.326 Sum_probs=29.4
Q ss_pred ccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEEE
Q psy7616 60 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96 (147)
Q Consensus 60 ~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v 96 (147)
..+|.|.+++..|+|.|.|.+........++.+.|.|
T Consensus 59 d~sl~i~nv~~~D~G~Y~C~v~tfP~G~~~~~~~l~~ 95 (96)
T cd05887 59 DATIMLENVGFSDIGVYICKAVTFPLGNTQSSTTVTV 95 (96)
T ss_pred ccEEEEeCCCccccEEEEEEEEeCCCCCeeEEEEEEE
Confidence 4478999999999999999998765554577776654
No 244
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=98.20 E-value=5.3e-05 Score=44.23 Aligned_cols=46 Identities=24% Similarity=0.429 Sum_probs=32.6
Q ss_pred eeEEeCCceEEcCCCCceEEeeCCeEEEEEeecCC-CC-CceEEEecCCC
Q psy7616 3 QLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGN-PV-PSIIWSKKDSS 50 (147)
Q Consensus 3 ~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~~v~w~~~~~~ 50 (147)
+.+..+|.+...+.. .....|+.+.|.|.+.+. |. ..+.|++++..
T Consensus 33 l~v~~~P~v~~~~~~--~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~ 80 (139)
T cd05771 33 LSVSEPPRVRLSLEK--LVSMIEEPQTLICHIAGYYPLDVQVEWTREPPG 80 (139)
T ss_pred EEEecCCceEEeCCC--ceeecCCcEEEEEEECCCCCCCeEEEEEECCCC
Confidence 345567877666542 244478889999999885 43 47999998754
No 245
>PHA02633 hypothetical protein; Provisional
Probab=98.19 E-value=4.1e-06 Score=41.01 Aligned_cols=37 Identities=14% Similarity=0.311 Sum_probs=30.1
Q ss_pred cCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616 109 EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 146 (147)
Q Consensus 109 ~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V 146 (147)
.+..+++.++..+|+|.|.|..+|..-.. ..++.|+|
T Consensus 16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c~-~~si~l~V 52 (63)
T PHA02633 16 NCNNMLILNPTQSDSGIYMCITKNETYSD-MMKFDLCI 52 (63)
T ss_pred ccccEEEeccccccCcEEEEEEcCCCeeE-EEEEEEEE
Confidence 57889999999999999999999875444 55666665
No 246
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.19 E-value=1.9e-05 Score=44.58 Aligned_cols=64 Identities=19% Similarity=0.442 Sum_probs=45.3
Q ss_pred ceEEeeCCeEEEEEeecC--CCCCceEEEecC--CCCC------------------CCce-e--e---eccceEEEeecC
Q psy7616 19 QLTVRKGGTITLECKASG--NPVPSIIWSKKD--SSLP------------------SGEK-S--L---EGFSITLEKVDR 70 (147)
Q Consensus 19 ~~~~~~g~~~~l~C~~~~--~~~~~v~w~~~~--~~~~------------------~~~~-~--~---~~~~l~~~~~~~ 70 (147)
.+.+..|+.+.|.|...+ .+.+.+.|++.. .... .... . . ....|.|.+++.
T Consensus 7 ~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~ 86 (116)
T cd04982 7 SITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNLEK 86 (116)
T ss_pred eEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEECCH
Confidence 557888999999999866 466789999952 1110 0111 1 1 234689999999
Q ss_pred CCCeEEEEEeec
Q psy7616 71 HQAGVYQCTATN 82 (147)
Q Consensus 71 ~~~g~y~C~~~~ 82 (147)
+|+|.|.|.+..
T Consensus 87 ~Dsg~Y~C~~~~ 98 (116)
T cd04982 87 EDSATYYCAYWE 98 (116)
T ss_pred HHCEEEEEEEec
Confidence 999999998764
No 247
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=98.16 E-value=1.5e-05 Score=46.56 Aligned_cols=39 Identities=23% Similarity=0.300 Sum_probs=28.6
Q ss_pred ceEEEeecCCCCeEEEEEeecCCCCceEEeEEEEEeeeec
Q psy7616 62 SITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCKIL 101 (147)
Q Consensus 62 ~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~~~ 101 (147)
+|.|.+++..|+|.|.|.+.+..+.. ...+.|.+..+|.
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~-~~~~~l~v~~~P~ 40 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQA-QQIIQLSVSEPPR 40 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcce-eeEEEEEEecCCc
Confidence 47889999999999999998765553 5555666554443
No 248
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.15 E-value=2.4e-05 Score=42.84 Aligned_cols=62 Identities=19% Similarity=0.370 Sum_probs=42.5
Q ss_pred EEeeCCeEEEEEeecCC--CCCceEEEecCC--CCC----------C--Cceee-----eccceEEEeecCCCCeEEEEE
Q psy7616 21 TVRKGGTITLECKASGN--PVPSIIWSKKDS--SLP----------S--GEKSL-----EGFSITLEKVDRHQAGVYQCT 79 (147)
Q Consensus 21 ~~~~g~~~~l~C~~~~~--~~~~v~w~~~~~--~~~----------~--~~~~~-----~~~~l~~~~~~~~~~g~y~C~ 79 (147)
.+..|+++.|.|...+. ....+.|++... .+. . ..+.. ....|.|.+++.+|+|.|.|.
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~ 81 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ 81 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence 46789999999987654 445699998432 110 0 00110 223588999999999999998
Q ss_pred eec
Q psy7616 80 ATN 82 (147)
Q Consensus 80 ~~~ 82 (147)
+.+
T Consensus 82 ~~~ 84 (98)
T cd04984 82 VWD 84 (98)
T ss_pred Ecc
Confidence 764
No 249
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.12 E-value=4.8e-06 Score=44.96 Aligned_cols=38 Identities=16% Similarity=0.264 Sum_probs=31.4
Q ss_pred cCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616 109 EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 146 (147)
Q Consensus 109 ~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V 146 (147)
...+|.|.+++.+|+|.|+|.+....|......+.|.|
T Consensus 55 ~~~sL~I~~l~~~DsG~Y~c~v~~~~~~~~~~~~~l~v 92 (92)
T cd05741 55 PNGSLLIQNLTKEDSGTYTLQIISTNGVTENAKFFLRV 92 (92)
T ss_pred CCceEEEccCCchhcEEEEEEEEcCCCcEEEEEEEEEC
Confidence 34789999999999999999999988766566676654
No 250
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.11 E-value=3.4e-06 Score=45.87 Aligned_cols=29 Identities=17% Similarity=0.345 Sum_probs=25.8
Q ss_pred cCCceEEeecCCCCCeEEEEEeecCCCCC
Q psy7616 109 EGFSITLEKVDRHQAGVYQCTATNGVGDP 137 (147)
Q Consensus 109 ~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~ 137 (147)
..++|.+.+++.+|+|.|+|.|+|.....
T Consensus 58 ~~G~L~fs~v~~~D~g~Y~C~A~n~~~~~ 86 (96)
T cd05727 58 TNGNLYIAKVEASDRGNYSCFVSSPSSTK 86 (96)
T ss_pred CCCcEEEeecCHhhCceeEEEEEecccCC
Confidence 46789999999999999999999997654
No 251
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.10 E-value=5.9e-05 Score=39.91 Aligned_cols=59 Identities=20% Similarity=0.344 Sum_probs=36.7
Q ss_pred EEEEEeecCC-CCCceEEEecCCCCCCCcee---------eeccceEEEeecCCCCeEEEEEeecCCCC
Q psy7616 28 ITLECKASGN-PVPSIIWSKKDSSLPSGEKS---------LEGFSITLEKVDRHQAGVYQCTATNGVGD 86 (147)
Q Consensus 28 ~~l~C~~~~~-~~~~v~w~~~~~~~~~~~~~---------~~~~~l~~~~~~~~~~g~y~C~~~~~~~~ 86 (147)
+.|.|.+.+. |.+.+.|++++..+...... .-.+.+.+......+.+.|.|.+.+....
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~ 70 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK 70 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence 5789998664 77899999998876432110 01112333333334456899999986544
No 252
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.10 E-value=8.3e-06 Score=45.24 Aligned_cols=39 Identities=15% Similarity=0.202 Sum_probs=31.6
Q ss_pred ccCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616 108 LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 146 (147)
Q Consensus 108 ~~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V 146 (147)
...++|.|.+++.+|+|.|+|.+.+.-.......+.|.|
T Consensus 67 ~~ngSL~I~~v~~~D~G~Y~~~v~~~~~~~~~~~v~l~V 105 (105)
T cd05774 67 YPNGSLLIQNVTQKDTGFYTLQTITTNFQVEQATVHLQV 105 (105)
T ss_pred eCCCcEEEecCCcccCEEEEEEEEeCCccEEEEEEEEEC
Confidence 445689999999999999999999987545466677665
No 253
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=98.07 E-value=6.7e-06 Score=44.96 Aligned_cols=34 Identities=26% Similarity=0.373 Sum_probs=28.0
Q ss_pred CCceEEeecCCCC-CeEEEEEeecCCCCCcCeeeEE
Q psy7616 110 GFSITLEKVDRHQ-AGVYQCTATNGVGDPVTVDMTL 144 (147)
Q Consensus 110 ~~~~~l~~~~~~d-~G~Y~C~a~n~~g~~~~~~~~l 144 (147)
...|.+.++..+| .|.|.|.|.|.+|.. ...++|
T Consensus 63 ~S~L~I~~~~~~d~~g~Y~C~a~N~~G~d-~~~i~L 97 (98)
T cd05898 63 LSTLTINNIMEADFQTHYNCTAWNSFGSG-TAIIQL 97 (98)
T ss_pred EEEEEECCCccccCCcEEEEEEEeCCccc-eEEEEe
Confidence 3467888988877 799999999999988 767665
No 254
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=98.05 E-value=8.9e-06 Score=44.32 Aligned_cols=35 Identities=23% Similarity=0.340 Sum_probs=27.0
Q ss_pred CCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616 110 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 146 (147)
Q Consensus 110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V 146 (147)
...|.+.+++.+|+|.|+|.+... - ..+..++|.|
T Consensus 61 ~~~L~I~nV~~~D~G~YtC~~~t~-~-~~~~~~~~~v 95 (95)
T cd05882 61 ELIISISNVQLSDEGEYTCSIFTM-P-VRTAKATVTV 95 (95)
T ss_pred eEEEEECCCCcccCEEEEEEEEee-c-cccEEEEEEC
Confidence 457889999999999999999883 2 2255666654
No 255
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.04 E-value=1.4e-05 Score=43.70 Aligned_cols=39 Identities=31% Similarity=0.401 Sum_probs=32.3
Q ss_pred ccCCceEEeecCCCCCeEEEEEeecC-CCCCcCeeeEEEEC
Q psy7616 108 LEGFSITLEKVDRHQAGVYQCTATNG-VGDPVTVDMTLEVL 147 (147)
Q Consensus 108 ~~~~~~~l~~~~~~d~G~Y~C~a~n~-~g~~~~~~~~l~V~ 147 (147)
....+|.|.+++.+|+|.|+|...+. .|.. +..+.|+|+
T Consensus 58 ~~~~sL~I~nv~~~D~G~Y~C~~~~~p~g~~-~~~~~L~v~ 97 (97)
T cd05846 58 LNSTSITIWNVTLEDEGCYKCIFNTFPDGSK-SGTMCLTVY 97 (97)
T ss_pred CCccEEEEeCCceeeeEEEEEEEEeCCCCCe-eeEEEEEEC
Confidence 34567999999999999999998754 5665 889999985
No 256
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=98.02 E-value=1.2e-05 Score=43.86 Aligned_cols=35 Identities=26% Similarity=0.338 Sum_probs=27.6
Q ss_pred CCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616 110 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 146 (147)
Q Consensus 110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V 146 (147)
..+|.+.+++.+|+|.|+|.+.+..+ . +..+.|.|
T Consensus 61 ~~sL~I~~v~~~DsG~Y~C~~~t~~~-~-~~~~~l~v 95 (95)
T cd07701 61 ELSISISDVSLSDEGQYTCSLFTMPV-K-TSKAYLTV 95 (95)
T ss_pred cEEEEECcCCcccCEEEEEEeEeecC-c-cEEEEEEC
Confidence 35688999999999999999998533 3 56677665
No 257
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=97.99 E-value=1.5e-05 Score=43.55 Aligned_cols=35 Identities=17% Similarity=0.341 Sum_probs=31.1
Q ss_pred CceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616 111 FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 146 (147)
Q Consensus 111 ~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V 146 (147)
..|.|..++.+|+|.|+|.|.|..+.. +.++.|.|
T Consensus 65 S~L~L~Rlk~~E~G~YTf~a~N~~~~~-s~tF~l~v 99 (101)
T cd05860 65 SELHLTRLKGTEGGTYTFLVSNSDASA-SVTFNVYV 99 (101)
T ss_pred EEEEEeecChhhCcEEEEEEECCCCeE-EEEEEEEE
Confidence 457889999999999999999999988 88888876
No 258
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=97.99 E-value=0.00018 Score=38.11 Aligned_cols=59 Identities=20% Similarity=0.387 Sum_probs=37.4
Q ss_pred EEEEEeecCC-CCCceEEEecCCCCCCCce-e--ee-------ccceEEEeecCCCCeEEEEEeecCCCC
Q psy7616 28 ITLECKASGN-PVPSIIWSKKDSSLPSGEK-S--LE-------GFSITLEKVDRHQAGVYQCTATNGVGD 86 (147)
Q Consensus 28 ~~l~C~~~~~-~~~~v~w~~~~~~~~~~~~-~--~~-------~~~l~~~~~~~~~~g~y~C~~~~~~~~ 86 (147)
+.|.|.+.+. |...|.|++++..+..... . .. .+.+.+......+...|.|.+.+....
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~ 71 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLH 71 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccC
Confidence 5789998764 7789999999877643221 1 11 122333333344557899999986543
No 259
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=97.99 E-value=1.6e-05 Score=44.57 Aligned_cols=36 Identities=28% Similarity=0.610 Sum_probs=30.0
Q ss_pred CCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616 110 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 146 (147)
Q Consensus 110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V 146 (147)
..+|+|++++.+|+|.|.|.+....+.. ...+.|.|
T Consensus 71 ~asL~I~~l~~sD~G~Y~C~v~~~~~~~-~~~v~l~V 106 (110)
T cd05878 71 DASLEISRLRSSDSGVYRCEVMHGIEDE-QDTVPLEV 106 (110)
T ss_pred cEEEEECCCChhhCEEEEEEEEeCCCcc-eEEEEEEE
Confidence 4568999999999999999998875555 77888876
No 260
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=97.97 E-value=2.7e-05 Score=42.26 Aligned_cols=63 Identities=29% Similarity=0.501 Sum_probs=42.1
Q ss_pred eeCCeEEEEEeecCC-CC-CceEEEecCCCCCCCce-----eee------ccceEEEeecCCCCeEEEEEeecCCC
Q psy7616 23 RKGGTITLECKASGN-PV-PSIIWSKKDSSLPSGEK-----SLE------GFSITLEKVDRHQAGVYQCTATNGVG 85 (147)
Q Consensus 23 ~~g~~~~l~C~~~~~-~~-~~v~w~~~~~~~~~~~~-----~~~------~~~l~~~~~~~~~~g~y~C~~~~~~~ 85 (147)
..|+.+.|.|.+.+. |. ..+.|++++..+..... ... .+.|.+......+.+.|.|.+.+...
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~ 86 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESL 86 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence 368899999999887 43 57999999877643321 011 12344444444588999999988643
No 261
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=97.97 E-value=8.6e-05 Score=40.49 Aligned_cols=34 Identities=12% Similarity=0.283 Sum_probs=25.9
Q ss_pred ccceEEEeecCCCCeEEEEEeecCCCCceEEeEE
Q psy7616 60 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMT 93 (147)
Q Consensus 60 ~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~ 93 (147)
..+|.|.+++.+|+|.|.|.+.........+.+.
T Consensus 59 d~sI~i~nvt~~D~G~Y~C~~~t~P~g~~~~~i~ 92 (96)
T cd05889 59 DMSLSFNNATEEDVGLYCCSLVTYPQGSWEKVIE 92 (96)
T ss_pred ccEEEEcCCCcccCEEEEEEEEeCCCCCeEEEEE
Confidence 3578999999999999999998755443455543
No 262
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=97.96 E-value=2.2e-05 Score=44.20 Aligned_cols=36 Identities=33% Similarity=0.637 Sum_probs=31.0
Q ss_pred CCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616 110 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 146 (147)
Q Consensus 110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V 146 (147)
..+|.|.+++.+|+|.|.|.+.+..... ...+.|.|
T Consensus 78 ~asL~i~~v~~sD~G~Y~C~V~~g~~~~-~~~v~L~V 113 (117)
T cd05901 78 DASLTIVKLRASDAGVYRCEVMHGIEDT-QDTVSLDV 113 (117)
T ss_pred ceEEEEcccccccCEEEEEEEEECCccc-EEEEEEEE
Confidence 4568889999999999999999987766 77888876
No 263
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=97.95 E-value=2.8e-05 Score=40.75 Aligned_cols=36 Identities=36% Similarity=0.634 Sum_probs=30.4
Q ss_pred CceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616 111 FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 147 (147)
Q Consensus 111 ~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~ 147 (147)
..+.+.+++.+|+|.|+|.+.+..+.. ...+.|.|+
T Consensus 51 ~~l~i~~~~~~d~G~Y~C~v~~~~~~~-~~~~~l~V~ 86 (86)
T smart00410 51 STLTISNVTPEDSGTYTCAATNSSGSA-SSTTTLTVL 86 (86)
T ss_pred eEEEEEeeccccCeEEEEEEEcCCCeE-EEEEEEEEC
Confidence 468889999999999999999888877 555888774
No 264
>smart00409 IG Immunoglobulin.
Probab=97.95 E-value=2.8e-05 Score=40.75 Aligned_cols=36 Identities=36% Similarity=0.634 Sum_probs=30.4
Q ss_pred CceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616 111 FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 147 (147)
Q Consensus 111 ~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~ 147 (147)
..+.+.+++.+|+|.|+|.+.+..+.. ...+.|.|+
T Consensus 51 ~~l~i~~~~~~d~G~Y~C~v~~~~~~~-~~~~~l~V~ 86 (86)
T smart00409 51 STLTISNVTPEDSGTYTCAATNSSGSA-SSTTTLTVL 86 (86)
T ss_pred eEEEEEeeccccCeEEEEEEEcCCCeE-EEEEEEEEC
Confidence 468889999999999999999888877 555888774
No 265
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=97.95 E-value=2.2e-05 Score=42.68 Aligned_cols=35 Identities=26% Similarity=0.374 Sum_probs=27.7
Q ss_pred CCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616 110 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 146 (147)
Q Consensus 110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V 146 (147)
...|.+.+++.+|+|.|+|.+.+... . +....|+|
T Consensus 61 ~~~L~I~~v~~~DsG~Y~C~~~~~~~-~-~~~~~~~v 95 (95)
T cd05717 61 ELSISISNVSLSDEGRYTCSLYTMPV-Q-TAKATVTV 95 (95)
T ss_pred eeEEEEccCCcccCEEEEEEEecCCC-c-eEEEEEEC
Confidence 34688999999999999999997753 3 56666765
No 266
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=97.94 E-value=2e-05 Score=38.84 Aligned_cols=27 Identities=33% Similarity=0.694 Sum_probs=23.6
Q ss_pred cCCceEEeecCCCCCeEEEEEeecCCC
Q psy7616 109 EGFSITLEKVDRHQAGVYQCTATNGVG 135 (147)
Q Consensus 109 ~~~~~~l~~~~~~d~G~Y~C~a~n~~g 135 (147)
....|.+.+++.+|+|.|+|.+.|..|
T Consensus 37 ~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 37 SGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 355788999999999999999999865
No 267
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.91 E-value=0.00015 Score=40.90 Aligned_cols=64 Identities=20% Similarity=0.431 Sum_probs=44.2
Q ss_pred ceEEeeCCeEEEEEeecCC-CCCceEEEecCC--CC-----------C--CCce-ee-----eccceEEEeecCCCCeEE
Q psy7616 19 QLTVRKGGTITLECKASGN-PVPSIIWSKKDS--SL-----------P--SGEK-SL-----EGFSITLEKVDRHQAGVY 76 (147)
Q Consensus 19 ~~~~~~g~~~~l~C~~~~~-~~~~v~w~~~~~--~~-----------~--~~~~-~~-----~~~~l~~~~~~~~~~g~y 76 (147)
.+.+..|+++.|+|..... ....+.|++... .+ . ..+. .. ....|.|.+++..|+|.|
T Consensus 8 ~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Dsg~Y 87 (116)
T cd07706 8 DVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDSAKY 87 (116)
T ss_pred ceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHCEEE
Confidence 5678899999999987653 345699998431 10 0 0111 11 123688999999999999
Q ss_pred EEEeec
Q psy7616 77 QCTATN 82 (147)
Q Consensus 77 ~C~~~~ 82 (147)
.|.+..
T Consensus 88 ~C~~~~ 93 (116)
T cd07706 88 FCALST 93 (116)
T ss_pred EEEEEC
Confidence 999875
No 268
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.91 E-value=7e-05 Score=37.43 Aligned_cols=56 Identities=39% Similarity=0.707 Sum_probs=40.7
Q ss_pred EEEEeecCCCCCceEEEecCCCCCCCc---------eeeeccceEEEeecCCCCeEEEEEeecCC
Q psy7616 29 TLECKASGNPVPSIIWSKKDSSLPSGE---------KSLEGFSITLEKVDRHQAGVYQCTATNGV 84 (147)
Q Consensus 29 ~l~C~~~~~~~~~v~w~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~g~y~C~~~~~~ 84 (147)
.+.|...+.+...+.|++.+....... .......+.+.++...|.|.|.|.+.+..
T Consensus 2 ~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 2 TLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred EEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 678998876677899999775543211 12344467888888899999999987754
No 269
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=97.87 E-value=1.3e-05 Score=41.84 Aligned_cols=34 Identities=26% Similarity=0.601 Sum_probs=28.5
Q ss_pred eEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616 113 ITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 146 (147)
Q Consensus 113 ~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V 146 (147)
+.+.+++.+|.|.|+|.|.+..+...+..++|.|
T Consensus 47 ~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v~V 80 (80)
T PF13895_consen 47 LFIPNVSPEDSGNYTCRASNGSGSNTSTSVNVTV 80 (80)
T ss_dssp EEESSEEGGGTEEEEEEEEETTEEEEEEEEEEEE
T ss_pred eeeeeeccccCEEEEEEEEeCCCCeEeeeEEeeC
Confidence 5667899999999999999977655688888876
No 270
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=97.86 E-value=0.00028 Score=38.57 Aligned_cols=64 Identities=25% Similarity=0.381 Sum_probs=43.8
Q ss_pred EEeeCCeEEEEEeecCC-CCCceEEEecCCCCC--------------CCce-e-----eeccceEEEeecCCCCeEEEEE
Q psy7616 21 TVRKGGTITLECKASGN-PVPSIIWSKKDSSLP--------------SGEK-S-----LEGFSITLEKVDRHQAGVYQCT 79 (147)
Q Consensus 21 ~~~~g~~~~l~C~~~~~-~~~~v~w~~~~~~~~--------------~~~~-~-----~~~~~l~~~~~~~~~~g~y~C~ 79 (147)
.+..|++++|.|..... ....+.|++...... .... . .....|.|.+++.+|+|.|.|.
T Consensus 3 ~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~ 82 (98)
T cd05716 3 TGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWCG 82 (98)
T ss_pred EEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEEE
Confidence 67899999999987542 455689998542110 0011 1 1223688999999999999998
Q ss_pred eecCC
Q psy7616 80 ATNGV 84 (147)
Q Consensus 80 ~~~~~ 84 (147)
+....
T Consensus 83 ~~~~~ 87 (98)
T cd05716 83 VGDDG 87 (98)
T ss_pred cccCC
Confidence 87643
No 271
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=97.85 E-value=0.00018 Score=38.12 Aligned_cols=58 Identities=19% Similarity=0.327 Sum_probs=36.7
Q ss_pred EEEEEeecC-CCCCceEEEecCCCCCCCcee----------eeccceEEEeecCCCCeEEEEEeecCCC
Q psy7616 28 ITLECKASG-NPVPSIIWSKKDSSLPSGEKS----------LEGFSITLEKVDRHQAGVYQCTATNGVG 85 (147)
Q Consensus 28 ~~l~C~~~~-~~~~~v~w~~~~~~~~~~~~~----------~~~~~l~~~~~~~~~~g~y~C~~~~~~~ 85 (147)
+.|.|.+.+ .|...+.|++++..+...... ...+.+.+......+...|.|.+.+..-
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l 70 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESL 70 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhc
Confidence 578999876 466779999999876432211 1122344443334455679999988543
No 272
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=97.84 E-value=0.0002 Score=39.86 Aligned_cols=62 Identities=21% Similarity=0.449 Sum_probs=41.3
Q ss_pred EEeeCCeEEEEEeecCC-CCCceEEEecCCC---CC--------------------CCcee---e---eccceEEEeecC
Q psy7616 21 TVRKGGTITLECKASGN-PVPSIIWSKKDSS---LP--------------------SGEKS---L---EGFSITLEKVDR 70 (147)
Q Consensus 21 ~~~~g~~~~l~C~~~~~-~~~~v~w~~~~~~---~~--------------------~~~~~---~---~~~~l~~~~~~~ 70 (147)
.+..|++++|.|..... ....+.|++.... .. ..... . ....|.|.+++.
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~ 81 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP 81 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence 46789999999987653 3456999984321 00 00010 0 112488999999
Q ss_pred CCCeEEEEEeec
Q psy7616 71 HQAGVYQCTATN 82 (147)
Q Consensus 71 ~~~g~y~C~~~~ 82 (147)
+|+|.|.|....
T Consensus 82 ~Dsg~YyCa~~~ 93 (107)
T cd07700 82 EDSGTYFCMTVG 93 (107)
T ss_pred HHCEEEEEeEcC
Confidence 999999998753
No 273
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=97.84 E-value=7.4e-05 Score=41.40 Aligned_cols=28 Identities=14% Similarity=0.360 Sum_probs=21.9
Q ss_pred EEeeCCeEEEEEeecCCCCCceEEEecC
Q psy7616 21 TVRKGGTITLECKASGNPVPSIIWSKKD 48 (147)
Q Consensus 21 ~~~~g~~~~l~C~~~~~~~~~v~w~~~~ 48 (147)
.+..|++++|.|.........+.|++..
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~ 29 (104)
T cd05720 2 DAELGQKVELKCEVLNSSPTGCSWLFQP 29 (104)
T ss_pred cccCCCeEEEEEEecCCCCCcEEEEEeC
Confidence 4578999999998765445679999865
No 274
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=97.72 E-value=5.6e-05 Score=40.43 Aligned_cols=26 Identities=19% Similarity=0.285 Sum_probs=22.7
Q ss_pred cCCceEEeecCCCCCeEEEEEeecCC
Q psy7616 109 EGFSITLEKVDRHQAGVYQCTATNGV 134 (147)
Q Consensus 109 ~~~~~~l~~~~~~d~G~Y~C~a~n~~ 134 (147)
.++.|.|.+++.+|+|.|+|.|.+..
T Consensus 46 ~~~~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 46 YRDGLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred ECCcEEEeCCCHHHCEEEEEEEEecc
Confidence 34568999999999999999998874
No 275
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=97.71 E-value=0.00012 Score=39.86 Aligned_cols=34 Identities=18% Similarity=0.372 Sum_probs=26.2
Q ss_pred cCCceEEeecCCCCCeEEEEEeecC-CCCCcCeeeE
Q psy7616 109 EGFSITLEKVDRHQAGVYQCTATNG-VGDPVTVDMT 143 (147)
Q Consensus 109 ~~~~~~l~~~~~~d~G~Y~C~a~n~-~g~~~~~~~~ 143 (147)
...+|.|.+++.+|.|.|+|.+.+- .|.. +..++
T Consensus 58 ~d~sI~i~nvt~~D~G~Y~C~~~t~P~g~~-~~~i~ 92 (96)
T cd05889 58 EDMSLSFNNATEEDVGLYCCSLVTYPQGSW-EKVIE 92 (96)
T ss_pred CccEEEEcCCCcccCEEEEEEEEeCCCCCe-EEEEE
Confidence 3567899999999999999999766 4544 44443
No 276
>PHA03376 BARF1; Provisional
Probab=97.70 E-value=0.00082 Score=40.89 Aligned_cols=66 Identities=20% Similarity=0.224 Sum_probs=44.9
Q ss_pred ceEEeeCCeEEEEEeecCC---CCCceEEEecCC----CCC------------CCc-e--e---eeccceEEEeecCCCC
Q psy7616 19 QLTVRKGGTITLECKASGN---PVPSIIWSKKDS----SLP------------SGE-K--S---LEGFSITLEKVDRHQA 73 (147)
Q Consensus 19 ~~~~~~g~~~~l~C~~~~~---~~~~v~w~~~~~----~~~------------~~~-~--~---~~~~~l~~~~~~~~~~ 73 (147)
.+....|+++.|.|..... ..-.|.|++.+. .+- .++ . . .++.+|.|.++..+|.
T Consensus 20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd 99 (221)
T PHA03376 20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD 99 (221)
T ss_pred chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence 3467889999999986522 234599999542 100 000 0 1 2445788999999999
Q ss_pred eEEEEEeecCC
Q psy7616 74 GVYQCTATNGV 84 (147)
Q Consensus 74 g~y~C~~~~~~ 84 (147)
|+|+|......
T Consensus 100 GtY~C~fQkge 110 (221)
T PHA03376 100 GNYLCRMKLGE 110 (221)
T ss_pred ceEEEEEEcCC
Confidence 99999998654
No 277
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=97.69 E-value=0.00067 Score=38.53 Aligned_cols=65 Identities=18% Similarity=0.291 Sum_probs=43.2
Q ss_pred ceEEeeCCeEEEEEeecCCC------CCceEEEecCCC----C-------CC-------Cc-ee-----eeccceEEEee
Q psy7616 19 QLTVRKGGTITLECKASGNP------VPSIIWSKKDSS----L-------PS-------GE-KS-----LEGFSITLEKV 68 (147)
Q Consensus 19 ~~~~~~g~~~~l~C~~~~~~------~~~v~w~~~~~~----~-------~~-------~~-~~-----~~~~~l~~~~~ 68 (147)
.+.+..|+.++|+|...... ...+.|++.... . .. .+ .. .....|.|.++
T Consensus 8 ~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~~l 87 (119)
T cd05712 8 SVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLISDA 87 (119)
T ss_pred EEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEccC
Confidence 56888999999999764221 245899985321 0 00 00 00 12236899999
Q ss_pred cCCCCeEEEEEeecC
Q psy7616 69 DRHQAGVYQCTATNG 83 (147)
Q Consensus 69 ~~~~~g~y~C~~~~~ 83 (147)
+..|+|.|.|.+...
T Consensus 88 ~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 88 QPEDSGKYFFRVELG 102 (119)
T ss_pred ChhhCeEEEEEEEcC
Confidence 999999999988653
No 278
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=97.68 E-value=8.2e-05 Score=40.18 Aligned_cols=36 Identities=25% Similarity=0.387 Sum_probs=27.9
Q ss_pred CceEEeecCCCCCeEEEEEeecCC-C-CCcCeeeEEEE
Q psy7616 111 FSITLEKVDRHQAGVYQCTATNGV-G-DPVTVDMTLEV 146 (147)
Q Consensus 111 ~~~~l~~~~~~d~G~Y~C~a~n~~-g-~~~~~~~~l~V 146 (147)
..+.|.+++.+|+|.|+|.+.+.. + +..+..+.|.|
T Consensus 53 ~~f~i~~v~~~~~G~Y~C~~~~~~~~~S~~Sd~lel~V 90 (91)
T cd05751 53 AKFFIPSMKREHAGRYRCYYRSGVALWSEPSDPLELVV 90 (91)
T ss_pred EEEEccCCChhHCEEEEEEEECCCCccCCCCCcEEEEe
Confidence 457889999999999999999873 2 33466677766
No 279
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=97.66 E-value=2.6e-05 Score=42.35 Aligned_cols=26 Identities=12% Similarity=0.455 Sum_probs=23.0
Q ss_pred CceEEeecCCCCCeEEEEEeecCCCC
Q psy7616 111 FSITLEKVDRHQAGVYQCTATNGVGD 136 (147)
Q Consensus 111 ~~~~l~~~~~~d~G~Y~C~a~n~~g~ 136 (147)
.+|++.+++.+|+|.|+|.+.|..+.
T Consensus 65 ~~L~I~~l~~sDsgtY~C~v~~~~~~ 90 (94)
T cd07690 65 FPLIIKNLKIEDSDTYICEVEDKKEE 90 (94)
T ss_pred EEEEECCCCHHHCEEEEEEECCccce
Confidence 46999999999999999999988654
No 280
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.63 E-value=0.00063 Score=34.01 Aligned_cols=53 Identities=30% Similarity=0.473 Sum_probs=35.6
Q ss_pred EEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCceeeeccceEEEeecCCCCeEEEEEeec
Q psy7616 21 TVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATN 82 (147)
Q Consensus 21 ~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~ 82 (147)
+...|..++|.|+..+. .+.|.+++..+.. ....+.+.+-. +++|.|.|.+.+
T Consensus 3 VsisGTtVtlTCP~~~~---~i~W~~n~~~~~g-----~~~~~~~~~~~-e~~G~Y~C~~~~ 55 (65)
T cd07692 3 VSISGTTVTVTCPLSGD---DIKWKKNDQVSQG-----SDEKYLSLNHF-SSSGYYHCTADN 55 (65)
T ss_pred EEEeccEEEEECCCCCC---CceEEeCCccCCC-----CCceEEeeccC-CCCceEEEEeCC
Confidence 34678999999975432 2899999855543 11233344444 789999998854
No 281
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=97.60 E-value=0.00093 Score=36.19 Aligned_cols=72 Identities=19% Similarity=0.391 Sum_probs=42.5
Q ss_pred CCceEEcCCCCceEEeeCCeEEEEEeecCC-CCC-ceEEEecCCCCCCCc----ee-eeccceE---EEeecCCCCeEEE
Q psy7616 8 PPSIRTSPSNGQLTVRKGGTITLECKASGN-PVP-SIIWSKKDSSLPSGE----KS-LEGFSIT---LEKVDRHQAGVYQ 77 (147)
Q Consensus 8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~-~v~w~~~~~~~~~~~----~~-~~~~~l~---~~~~~~~~~g~y~ 77 (147)
||.+.+.+... . ++...|.|.+.+. |.. .+.|.+++..+.... .. ...+... .-.+...+...|.
T Consensus 2 pP~v~v~~~~~--~---~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~yt 76 (93)
T cd07698 2 PPEVRVTRKRA--P---DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYS 76 (93)
T ss_pred CCEEEEEecCC--C---CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEE
Confidence 67776665532 1 6789999999885 443 789999985321111 11 1111111 1233445778899
Q ss_pred EEeecCC
Q psy7616 78 CTATNGV 84 (147)
Q Consensus 78 C~~~~~~ 84 (147)
|.+.+..
T Consensus 77 C~V~H~~ 83 (93)
T cd07698 77 CRVEHSG 83 (93)
T ss_pred EEEEeCC
Confidence 9998754
No 282
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=97.57 E-value=6.5e-05 Score=37.53 Aligned_cols=18 Identities=28% Similarity=0.741 Sum_probs=17.1
Q ss_pred eEEeecCCCCCeEEEEEe
Q psy7616 113 ITLEKVDRHQAGVYQCTA 130 (147)
Q Consensus 113 ~~l~~~~~~d~G~Y~C~a 130 (147)
|.|.+++.+|+|.|+|.|
T Consensus 47 L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 47 LTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp EEESSCTGGGTEEEEEEE
T ss_pred EEEccCCHHHCEEEEEEC
Confidence 889999999999999986
No 283
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=97.57 E-value=0.00054 Score=38.43 Aligned_cols=78 Identities=14% Similarity=0.304 Sum_probs=44.0
Q ss_pred EEeCCceEEcCCCCceEEeeCCeEEEEEeecCC-CC-CceEEEecCCCCCCCce-e--ee-------ccceEEEeecCCC
Q psy7616 5 QMVPPSIRTSPSNGQLTVRKGGTITLECKASGN-PV-PSIIWSKKDSSLPSGEK-S--LE-------GFSITLEKVDRHQ 72 (147)
Q Consensus 5 ~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~~v~w~~~~~~~~~~~~-~--~~-------~~~l~~~~~~~~~ 72 (147)
++.+|...+.... ......|+.++|.|.+.+. |. ..+.|++++..+..... . .. .+.|.+. +...|
T Consensus 2 v~~~P~~p~i~~~-~~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~-~~~~d 79 (111)
T cd05772 2 VRAKPSVPVVSGP-SGRANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVK-LTEDD 79 (111)
T ss_pred cccCCCCcEeCCc-hhccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEE-Ccccc
Confidence 3456655443322 1134578889999999885 43 46999999977643211 0 01 1122222 23333
Q ss_pred Ce-EEEEEeecCC
Q psy7616 73 AG-VYQCTATNGV 84 (147)
Q Consensus 73 ~g-~y~C~~~~~~ 84 (147)
.+ .|.|.+.+..
T Consensus 80 ~~~~ytC~V~H~~ 92 (111)
T cd05772 80 VHSQVTCEVQHRT 92 (111)
T ss_pred ccCceEEEEEeCC
Confidence 33 4999998854
No 284
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.57 E-value=0.00024 Score=39.08 Aligned_cols=76 Identities=26% Similarity=0.472 Sum_probs=43.0
Q ss_pred CCceEEcCCCCceEEeeCCeEEEEEeecCC-C-CCceEEEecCCCCCCCce----e-eecc------ceEEEeecCCCCe
Q psy7616 8 PPSIRTSPSNGQLTVRKGGTITLECKASGN-P-VPSIIWSKKDSSLPSGEK----S-LEGF------SITLEKVDRHQAG 74 (147)
Q Consensus 8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~-~~~v~w~~~~~~~~~~~~----~-~~~~------~l~~~~~~~~~~g 74 (147)
||.+.+.+++. .....++..+|.|.+.+. | ...+.|++++..+..... . ...+ .|.+......+..
T Consensus 1 pP~V~v~~p~~-~~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~ 79 (100)
T cd07699 1 APSVTIFPPSS-EELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHK 79 (100)
T ss_pred CCeEEEECCCH-HHHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCC
Confidence 45555554432 133456789999998874 3 346899999877642211 1 1112 2223222222356
Q ss_pred EEEEEeecCC
Q psy7616 75 VYQCTATNGV 84 (147)
Q Consensus 75 ~y~C~~~~~~ 84 (147)
.|.|.+.+..
T Consensus 80 ~~sC~V~H~~ 89 (100)
T cd07699 80 VYTCEVTHEG 89 (100)
T ss_pred eEEEEEEecC
Confidence 7999998754
No 285
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=97.50 E-value=0.00011 Score=39.95 Aligned_cols=30 Identities=13% Similarity=0.103 Sum_probs=25.6
Q ss_pred ccCCceEEeecCCCCCe-EEEEEeecCCCCC
Q psy7616 108 LEGFSITLEKVDRHQAG-VYQCTATNGVGDP 137 (147)
Q Consensus 108 ~~~~~~~l~~~~~~d~G-~Y~C~a~n~~g~~ 137 (147)
...++|.+.+++.+|+| .|.|.|.|.....
T Consensus 55 ~~~GnL~fs~v~~~D~g~~Y~C~a~~~~~~~ 85 (95)
T cd05845 55 GQNGNLYFANVEEQDSHPDYICHAHFPGLRT 85 (95)
T ss_pred CCCceEEEEEEehhhCCCCeEEEEEcccccc
Confidence 34588999999999999 8999999997544
No 286
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=97.48 E-value=0.0022 Score=36.37 Aligned_cols=64 Identities=23% Similarity=0.424 Sum_probs=42.5
Q ss_pred ceEEeeCCeEEEEEeecCCC--CCceEEEecCC--CC---------------C---CCce-ee--e---ccceEEEeecC
Q psy7616 19 QLTVRKGGTITLECKASGNP--VPSIIWSKKDS--SL---------------P---SGEK-SL--E---GFSITLEKVDR 70 (147)
Q Consensus 19 ~~~~~~g~~~~l~C~~~~~~--~~~v~w~~~~~--~~---------------~---~~~~-~~--~---~~~l~~~~~~~ 70 (147)
.+.+..|++++|.|...... ...+.|++-.. .+ . .... .. . ...|.|.++..
T Consensus 6 ~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~ 85 (117)
T cd04981 6 PGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSLTP 85 (117)
T ss_pred CeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCCCH
Confidence 45889999999999865432 45689998432 11 0 0000 10 1 12588899999
Q ss_pred CCCeEEEEEeec
Q psy7616 71 HQAGVYQCTATN 82 (147)
Q Consensus 71 ~~~g~y~C~~~~ 82 (147)
+|+|.|.|....
T Consensus 86 ~Dsa~YyCa~~~ 97 (117)
T cd04981 86 EDTAVYYCARGL 97 (117)
T ss_pred HHCEEEEEEEEc
Confidence 999999998754
No 287
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=97.47 E-value=0.00012 Score=37.52 Aligned_cols=25 Identities=32% Similarity=0.638 Sum_probs=21.4
Q ss_pred ccCCceEEeecCCCCCeEEEEEeec
Q psy7616 108 LEGFSITLEKVDRHQAGVYQCTATN 132 (147)
Q Consensus 108 ~~~~~~~l~~~~~~d~G~Y~C~a~n 132 (147)
.....|.+.++..+|.|.|+|.|.|
T Consensus 51 ~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 51 SSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp EEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred ceeeEEEEccCCHHhCcEEEEEEEC
Confidence 3455688899999999999999987
No 288
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=97.46 E-value=0.00044 Score=37.03 Aligned_cols=61 Identities=21% Similarity=0.427 Sum_probs=37.8
Q ss_pred CCeEEEEEee-cCCCCCceEEEecCCCCCCCce----------eeeccceEEEeecCCCCeEEEEEeecCCC
Q psy7616 25 GGTITLECKA-SGNPVPSIIWSKKDSSLPSGEK----------SLEGFSITLEKVDRHQAGVYQCTATNGVG 85 (147)
Q Consensus 25 g~~~~l~C~~-~~~~~~~v~w~~~~~~~~~~~~----------~~~~~~l~~~~~~~~~~g~y~C~~~~~~~ 85 (147)
|+.+.+.|.+ .+.|.+.+.|+.++..+..... ..-.+.|.+..-...+...+.|.+.+...
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~ 85 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPAL 85 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTC
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCcc
Confidence 5799999975 4568889999999876621110 11122344443333456778999988643
No 289
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=97.45 E-value=0.0003 Score=37.45 Aligned_cols=37 Identities=16% Similarity=0.306 Sum_probs=25.6
Q ss_pred cCCceEEeecCCCCCeEEEEEeecCCCCC-cCeeeEEEE
Q psy7616 109 EGFSITLEKVDRHQAGVYQCTATNGVGDP-VTVDMTLEV 146 (147)
Q Consensus 109 ~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~-~~~~~~l~V 146 (147)
....+.+..++.+|+|.|.|.+. +.|.. .-..+.|.|
T Consensus 45 ~~~GLlI~~~~~~dsG~Y~C~s~-E~gf~~~~~~y~l~v 82 (85)
T cd05872 45 GTDGLLILVTSPEHSGTYRCYSE-EEGFQQLVASYSLNV 82 (85)
T ss_pred eCCCCEEEECCHhhCEEEEEEEe-cCCCeEEEEEEEEEE
Confidence 34457789999999999999986 44544 233344444
No 290
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=97.40 E-value=0.0015 Score=33.82 Aligned_cols=57 Identities=23% Similarity=0.403 Sum_probs=33.8
Q ss_pred EEEEEeecCC-CC-CceEEEecCCCCCCCce-----------eeeccceEEEeecCCCCeEEEEEeecCC
Q psy7616 28 ITLECKASGN-PV-PSIIWSKKDSSLPSGEK-----------SLEGFSITLEKVDRHQAGVYQCTATNGV 84 (147)
Q Consensus 28 ~~l~C~~~~~-~~-~~v~w~~~~~~~~~~~~-----------~~~~~~l~~~~~~~~~~g~y~C~~~~~~ 84 (147)
++|.|.+.+. |. ..+.|++++..+..... ....+.|.+......+...|.|.+.+..
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~ 71 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG 71 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence 5789998885 44 47999999875322111 0111223333334456678999987643
No 291
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=97.38 E-value=0.00044 Score=37.65 Aligned_cols=33 Identities=21% Similarity=0.314 Sum_probs=24.2
Q ss_pred ceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616 112 SITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 146 (147)
Q Consensus 112 ~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V 146 (147)
+|.+++++.+|+|.|+|.+....- .+...+++|
T Consensus 63 tL~I~~vq~~D~G~Y~Cqv~t~p~--~~~~~~~~~ 95 (95)
T cd05881 63 RVSLSNVSLSDEGRYFCQLYTDPP--QEAYTTITV 95 (95)
T ss_pred EEEECcCCcccCEEEEEEEEcccC--eEEEEEEEC
Confidence 478899999999999999976422 244555543
No 292
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.37 E-value=0.00059 Score=37.67 Aligned_cols=31 Identities=23% Similarity=0.384 Sum_probs=22.9
Q ss_pred EeeCCeEEEEEeecCCCCC--ceEEEecCCCCC
Q psy7616 22 VRKGGTITLECKASGNPVP--SIIWSKKDSSLP 52 (147)
Q Consensus 22 ~~~g~~~~l~C~~~~~~~~--~v~w~~~~~~~~ 52 (147)
+..+..++|.|.+.+..+. .+.|.+++..+.
T Consensus 13 ~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~ 45 (102)
T cd05768 13 LSLQETATLTCLVKGFSPSDIFVKWLQNGQPLS 45 (102)
T ss_pred hCcCCceEEEEEEeeEeCCCCEEEEEECCEECC
Confidence 3456789999999885333 479999987653
No 293
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=97.33 E-value=0.003 Score=34.33 Aligned_cols=71 Identities=18% Similarity=0.337 Sum_probs=40.9
Q ss_pred CCceEEcCCCCceEEeeCCeEEEEEeecCC-CC-CceEEEecCCCCCCCcee-----e------eccceEEEeecCCCCe
Q psy7616 8 PPSIRTSPSNGQLTVRKGGTITLECKASGN-PV-PSIIWSKKDSSLPSGEKS-----L------EGFSITLEKVDRHQAG 74 (147)
Q Consensus 8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~~v~w~~~~~~~~~~~~~-----~------~~~~l~~~~~~~~~~g 74 (147)
||.+.+.+.. ....+...+|.|.+.+. |. ..+.|.+++..+...... . ....|.+ ...+..
T Consensus 1 ~P~V~v~~~~---~~~~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v---~~~~~~ 74 (94)
T cd05767 1 PPEVTVFSLK---PVELGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNF---TPEEGD 74 (94)
T ss_pred CCEEEEEeCC---cccCCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEE---ECCCCC
Confidence 4555444332 23346667999999885 43 358999998876432110 1 1112322 234556
Q ss_pred EEEEEeecCC
Q psy7616 75 VYQCTATNGV 84 (147)
Q Consensus 75 ~y~C~~~~~~ 84 (147)
.|.|.+.+..
T Consensus 75 ~ytC~V~H~~ 84 (94)
T cd05767 75 IYSCIVEHWG 84 (94)
T ss_pred eEEEEEEeCC
Confidence 7999998753
No 294
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=97.28 E-value=0.0045 Score=33.63 Aligned_cols=62 Identities=15% Similarity=0.285 Sum_probs=37.0
Q ss_pred eeCCeEEEEEeecCC-CCC-ceEEEecCCCCCCCce---e--eeccceEE---EeecCCCCeEEEEEeecCC
Q psy7616 23 RKGGTITLECKASGN-PVP-SIIWSKKDSSLPSGEK---S--LEGFSITL---EKVDRHQAGVYQCTATNGV 84 (147)
Q Consensus 23 ~~g~~~~l~C~~~~~-~~~-~v~w~~~~~~~~~~~~---~--~~~~~l~~---~~~~~~~~g~y~C~~~~~~ 84 (147)
..|+..+|.|.+.+. |.. .+.|.+++..+..... . ...+...+ -.+...+...|.|.+.+..
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V~H~~ 83 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTPSRGDTYTCVVEHSS 83 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcCCCCCEEEEEEEeCC
Confidence 467889999999885 333 5899999877543211 1 11111111 1223345567999998754
No 295
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=97.26 E-value=0.00061 Score=37.37 Aligned_cols=40 Identities=20% Similarity=0.397 Sum_probs=33.4
Q ss_pred ccCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616 108 LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 147 (147)
Q Consensus 108 ~~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~ 147 (147)
.+...|.++.++.+|+|.|.-++.+..|......+++.|+
T Consensus 68 ~enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsVF 107 (108)
T PF11465_consen 68 SENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSVF 107 (108)
T ss_dssp TTTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEEE
T ss_pred ccCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEee
Confidence 4566788899999999999999999999888888999885
No 296
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=97.26 E-value=0.002 Score=36.38 Aligned_cols=78 Identities=19% Similarity=0.364 Sum_probs=43.4
Q ss_pred CCceEEcCCCCceEEeeCCeEEEEEeecCC-CC-CceEEEecCCCCCCCce-----ee-------eccceEEEeecCCC-
Q psy7616 8 PPSIRTSPSNGQLTVRKGGTITLECKASGN-PV-PSIIWSKKDSSLPSGEK-----SL-------EGFSITLEKVDRHQ- 72 (147)
Q Consensus 8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~~v~w~~~~~~~~~~~~-----~~-------~~~~l~~~~~~~~~- 72 (147)
+|.+.+-+++. ..+..++.++|.|.+.+. |. ..+.|.+++..+..... .. -.+.|.+...+..+
T Consensus 2 ~P~V~v~~ps~-~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~ 80 (115)
T cd05769 2 PPTVAIFPPSE-AEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNP 80 (115)
T ss_pred CCEEEEECcCh-HHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccC
Confidence 45555444432 233356778999999885 43 36899999876543211 11 11223333222222
Q ss_pred CeEEEEEeecCCCC
Q psy7616 73 AGVYQCTATNGVGD 86 (147)
Q Consensus 73 ~g~y~C~~~~~~~~ 86 (147)
...|.|.+.+....
T Consensus 81 ~~~ytC~V~H~g~~ 94 (115)
T cd05769 81 RNTFTCIVQFYGGT 94 (115)
T ss_pred CCeEEEEEEEeCCc
Confidence 45799999886443
No 297
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=97.25 E-value=0.004 Score=33.76 Aligned_cols=61 Identities=16% Similarity=0.292 Sum_probs=37.1
Q ss_pred eeCCeEEEEEeecCCCC--CceEEEecCCCCCCCcee-----eeccceEEE---eecCCCCeEEEEEeecCC
Q psy7616 23 RKGGTITLECKASGNPV--PSIIWSKKDSSLPSGEKS-----LEGFSITLE---KVDRHQAGVYQCTATNGV 84 (147)
Q Consensus 23 ~~g~~~~l~C~~~~~~~--~~v~w~~~~~~~~~~~~~-----~~~~~l~~~---~~~~~~~g~y~C~~~~~~ 84 (147)
..|...+|.|.+.+.-+ ..+.|.+++..+. .... .......+. .+...+...|.|.+.+..
T Consensus 13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~~ 83 (93)
T cd05770 13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHNS 83 (93)
T ss_pred cCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEECC
Confidence 35666789999988533 3589999998765 2211 111222221 234556667999998743
No 298
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=97.22 E-value=0.00072 Score=35.53 Aligned_cols=35 Identities=14% Similarity=0.277 Sum_probs=26.4
Q ss_pred ceEEeecCCCCCeEEEEEeecCCCCC--cCeeeEEEE
Q psy7616 112 SITLEKVDRHQAGVYQCTATNGVGDP--VTVDMTLEV 146 (147)
Q Consensus 112 ~~~l~~~~~~d~G~Y~C~a~n~~g~~--~~~~~~l~V 146 (147)
.|.+...+..|.+.|+|.|.|+.+.. ......|.|
T Consensus 44 ~L~~~~~~~Ddg~~~~C~A~n~a~~~~~~~~~~~l~V 80 (80)
T cd05885 44 TIRFPVDRKDDGAILSCEASHPALVSQKKQTQYSLDV 80 (80)
T ss_pred EEEEEeeeccCCcEEEEEEEChhhCCCCeeEEEEEeC
Confidence 46677778888999999999998754 345566654
No 299
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=97.21 E-value=0.0011 Score=40.34 Aligned_cols=39 Identities=18% Similarity=0.294 Sum_probs=30.9
Q ss_pred ccCCceEEeecCCCCCeEEEEEeecCC-CCCcCeeeEEEE
Q psy7616 108 LEGFSITLEKVDRHQAGVYQCTATNGV-GDPVTVDMTLEV 146 (147)
Q Consensus 108 ~~~~~~~l~~~~~~d~G~Y~C~a~n~~-g~~~~~~~~l~V 146 (147)
.....+++.+++.+|+|.|+|....-. |..++....|+|
T Consensus 82 ~~~StItIknVt~sDeGcY~C~F~tfp~G~~~~gt~CLtV 121 (189)
T PHA02987 82 FNESTILIKNVSLKDNGCYTCIFNTLLSKNNEKGVVCLNV 121 (189)
T ss_pred CCcceEEEEeCChhhCeEEEEEEEecCCCCCceeEEEEEE
Confidence 346789999999999999999996553 634477888876
No 300
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.18 E-value=0.00029 Score=38.89 Aligned_cols=25 Identities=24% Similarity=0.607 Sum_probs=22.3
Q ss_pred CceEEeecCCCCCeEEEEEeecCCC
Q psy7616 111 FSITLEKVDRHQAGVYQCTATNGVG 135 (147)
Q Consensus 111 ~~~~l~~~~~~d~G~Y~C~a~n~~g 135 (147)
..|.|.+++.+|+|.|.|.+.+..+
T Consensus 67 ~sL~I~~v~~~D~G~Y~C~v~~~~~ 91 (105)
T cd00099 67 FTLTISSLQPEDSAVYYCAVSLSGG 91 (105)
T ss_pred EEEEECCCCHHHCEEEEEEEecCCC
Confidence 4688899999999999999998765
No 301
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=97.16 E-value=0.0013 Score=36.47 Aligned_cols=73 Identities=26% Similarity=0.512 Sum_probs=48.6
Q ss_pred eCCeEEEEEeecCCC------CCceEEEecC--C-CC-------CCC------c--e------eeeccceEEEeecCCCC
Q psy7616 24 KGGTITLECKASGNP------VPSIIWSKKD--S-SL-------PSG------E--K------SLEGFSITLEKVDRHQA 73 (147)
Q Consensus 24 ~g~~~~l~C~~~~~~------~~~v~w~~~~--~-~~-------~~~------~--~------~~~~~~l~~~~~~~~~~ 73 (147)
.|++++|+|.....+ ...+.|++.. . .. ... . + .....+|.|.+++..|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 378999999976532 4579999963 1 10 000 0 0 01244789999999999
Q ss_pred eEEEEEeecCCCCceEEeEEEEEe
Q psy7616 74 GVYQCTATNGVGDPVTVDMTLEVL 97 (147)
Q Consensus 74 g~y~C~~~~~~~~~~~~~~~l~v~ 97 (147)
|.|.|.+.+..+.. ...+.|.|.
T Consensus 81 G~Y~C~v~~~~~~~-~~~v~L~V~ 103 (106)
T cd05714 81 GRYRCEVIDGIEDE-QDTVELEVR 103 (106)
T ss_pred EEEEEEEEcCCCce-EEEEEEEEE
Confidence 99999998865543 566666654
No 302
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=97.14 E-value=0.00062 Score=37.86 Aligned_cols=25 Identities=20% Similarity=0.417 Sum_probs=21.6
Q ss_pred CceEEeecCCCCCeEEEEEeecCCC
Q psy7616 111 FSITLEKVDRHQAGVYQCTATNGVG 135 (147)
Q Consensus 111 ~~~~l~~~~~~d~G~Y~C~a~n~~g 135 (147)
..|.|.+++.+|+|.|.|.+.+..+
T Consensus 70 ~~L~I~~~~~~DsG~Y~C~~~~~~~ 94 (109)
T cd04983 70 SSLHISAAQLSDSAVYFCALSESGG 94 (109)
T ss_pred EEEEECCCCHHHCEEEEEEEecCCC
Confidence 4688899999999999999997643
No 303
>smart00406 IGv Immunoglobulin V-Type.
Probab=97.09 E-value=0.0024 Score=33.20 Aligned_cols=20 Identities=25% Similarity=0.629 Sum_probs=16.7
Q ss_pred cceEEEeecCCCCeEEEEEe
Q psy7616 61 FSITLEKVDRHQAGVYQCTA 80 (147)
Q Consensus 61 ~~l~~~~~~~~~~g~y~C~~ 80 (147)
..|.|.+++..|+|.|.|.+
T Consensus 62 ~~L~i~~~~~~D~G~Y~C~v 81 (81)
T smart00406 62 VSLTISNLRVEDTGTYYCAV 81 (81)
T ss_pred EEEEEcCCCHHHCEEEEEcC
Confidence 35888999999999999963
No 304
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=97.00 E-value=0.0037 Score=35.14 Aligned_cols=72 Identities=17% Similarity=0.380 Sum_probs=46.5
Q ss_pred eCCeEEEEEeecCCC------------CCceEEEecCC--CC-------------CC--Cce-e------eeccceEEEe
Q psy7616 24 KGGTITLECKASGNP------------VPSIIWSKKDS--SL-------------PS--GEK-S------LEGFSITLEK 67 (147)
Q Consensus 24 ~g~~~~l~C~~~~~~------------~~~v~w~~~~~--~~-------------~~--~~~-~------~~~~~l~~~~ 67 (147)
.|++++|+|...... .+.+.|++... +. .. ++. . .....|.|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 378999999875422 35799998531 10 00 011 1 1355799999
Q ss_pred ecCCCCeEEEEEeecCCCCceEEeEEEEE
Q psy7616 68 VDRHQAGVYQCTATNGVGDPVTVDMTLEV 96 (147)
Q Consensus 68 ~~~~~~g~y~C~~~~~~~~~~~~~~~l~v 96 (147)
++.+|+|.|.|.+.+..... .....|.|
T Consensus 81 l~~sDsG~Y~C~V~~g~~~~-~~~v~l~v 108 (112)
T cd05900 81 LRSNDSGTYRCEVMHGIEDN-YDTVEVQV 108 (112)
T ss_pred cccccCEEEEEEEecCCCCc-eeEEEEEE
Confidence 99999999999998754443 44444544
No 305
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=96.98 E-value=0.0012 Score=36.02 Aligned_cols=23 Identities=17% Similarity=0.343 Sum_probs=20.0
Q ss_pred CceEEeecCCCCCeEEEEEeecC
Q psy7616 111 FSITLEKVDRHQAGVYQCTATNG 133 (147)
Q Consensus 111 ~~~~l~~~~~~d~G~Y~C~a~n~ 133 (147)
..|.|.+++.+|+|.|.|.+.+.
T Consensus 63 ~~L~I~~~~~~Dsg~Y~C~~~~~ 85 (98)
T cd04984 63 ASLTISGAQTEDEADYYCQVWDS 85 (98)
T ss_pred EEEEECCCChhhCEEEEEEEccC
Confidence 35888999999999999999764
No 306
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=96.97 E-value=0.0015 Score=34.38 Aligned_cols=34 Identities=21% Similarity=0.382 Sum_probs=23.3
Q ss_pred eEEeecCCCCCeEEEEEeecCCCCC-cCeeeEEEE
Q psy7616 113 ITLEKVDRHQAGVYQCTATNGVGDP-VTVDMTLEV 146 (147)
Q Consensus 113 ~~l~~~~~~d~G~Y~C~a~n~~g~~-~~~~~~l~V 146 (147)
|.+......|.|.|+|.|.|..... ....++|+|
T Consensus 48 L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~l~v 82 (82)
T cd05759 48 LPITPSDHDTGRTFTCRARNEALPTGKETSVTLDV 82 (82)
T ss_pred EEEeCceecCCCEEEEEEcCccCCCCcEEEEEEcC
Confidence 4455556678889999999986433 355666654
No 307
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=96.96 E-value=0.00093 Score=36.46 Aligned_cols=25 Identities=28% Similarity=0.569 Sum_probs=21.5
Q ss_pred CCceEEeecCCCCCeEEEEEeecCC
Q psy7616 110 GFSITLEKVDRHQAGVYQCTATNGV 134 (147)
Q Consensus 110 ~~~~~l~~~~~~d~G~Y~C~a~n~~ 134 (147)
..+|.+.+++.+|+|.|.|.+....
T Consensus 63 ~~~L~I~~v~~~DsG~Y~C~~~~~~ 87 (98)
T cd05716 63 VFTVTLNQLRKEDAGWYWCGVGDDG 87 (98)
T ss_pred EEEEEEcCCCHHHCEEEEEEcccCC
Confidence 3568889999999999999997764
No 308
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=96.95 E-value=0.0028 Score=35.09 Aligned_cols=73 Identities=25% Similarity=0.474 Sum_probs=47.7
Q ss_pred eCCeEEEEEeecCC------CCCceEEEecCCC-CC---------------C---Cce-e----eeccceEEEeecCCCC
Q psy7616 24 KGGTITLECKASGN------PVPSIIWSKKDSS-LP---------------S---GEK-S----LEGFSITLEKVDRHQA 73 (147)
Q Consensus 24 ~g~~~~l~C~~~~~------~~~~v~w~~~~~~-~~---------------~---~~~-~----~~~~~l~~~~~~~~~~ 73 (147)
.|++++|.|..... ....+.|++.... .+ . .+. . ....+|.|.+++..|+
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds 80 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY 80 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence 37899999987543 2346999985421 00 0 000 1 1123689999999999
Q ss_pred eEEEEEeecCCCCceEEeEEEEEe
Q psy7616 74 GVYQCTATNGVGDPVTVDMTLEVL 97 (147)
Q Consensus 74 g~y~C~~~~~~~~~~~~~~~l~v~ 97 (147)
|.|.|.+.+..+.. ...+.|.|.
T Consensus 81 G~Y~C~v~~~~~~~-~~~~~l~v~ 103 (106)
T cd05877 81 GRYRCEVIDGLEDE-SVVVALRLR 103 (106)
T ss_pred EEEEEEEEecccce-EEEEEEEEE
Confidence 99999998765553 566666553
No 309
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=96.93 E-value=0.0016 Score=36.47 Aligned_cols=37 Identities=27% Similarity=0.530 Sum_probs=28.2
Q ss_pred ccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEEEe
Q psy7616 60 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97 (147)
Q Consensus 60 ~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~ 97 (147)
..+|.|.+++.+|+|.|.|.+....... ...+.|.|.
T Consensus 71 ~asL~i~nv~~~D~G~Y~C~v~~g~~~~-~~~v~L~V~ 107 (110)
T cd05902 71 NASLVLSRLRYSDSGTYRCEVVLGINDE-QDTVPLEVT 107 (110)
T ss_pred eEEEEECCCCHHHCEEEEEEEEECCccc-EEEEEEEEE
Confidence 3478999999999999999998755332 566666654
No 310
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.93 E-value=0.0095 Score=32.45 Aligned_cols=27 Identities=26% Similarity=0.512 Sum_probs=21.0
Q ss_pred eCCeEEEEEeecCCCC--CceEEEecCCC
Q psy7616 24 KGGTITLECKASGNPV--PSIIWSKKDSS 50 (147)
Q Consensus 24 ~g~~~~l~C~~~~~~~--~~v~w~~~~~~ 50 (147)
.++.++|.|.+.+..+ ..|.|.+++..
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~ 43 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS 43 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE
Confidence 4667899999988533 35899999875
No 311
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=96.86 E-value=0.0032 Score=35.63 Aligned_cols=68 Identities=19% Similarity=0.309 Sum_probs=46.1
Q ss_pred ceEEeeCCeEEEEEeecCC----CCCceEEEec---------------CCCCCCC-----cee-------eeccceEEEe
Q psy7616 19 QLTVRKGGTITLECKASGN----PVPSIIWSKK---------------DSSLPSG-----EKS-------LEGFSITLEK 67 (147)
Q Consensus 19 ~~~~~~g~~~~l~C~~~~~----~~~~v~w~~~---------------~~~~~~~-----~~~-------~~~~~l~~~~ 67 (147)
++.+..|+.+.|.|..... +...+.|... +...... .+. ....++.|.+
T Consensus 7 ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~n 86 (116)
T cd05879 7 EVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIHN 86 (116)
T ss_pred eEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEcc
Confidence 5578899999999997553 2357999432 2211100 011 1334789999
Q ss_pred ecCCCCeEEEEEeecCCCC
Q psy7616 68 VDRHQAGVYQCTATNGVGD 86 (147)
Q Consensus 68 ~~~~~~g~y~C~~~~~~~~ 86 (147)
++..|.|.|.|.+.+....
T Consensus 87 v~~sD~G~Y~C~v~n~p~~ 105 (116)
T cd05879 87 LDYTDNGTFTCDVKNPPDI 105 (116)
T ss_pred CCcccCEEEEEEEEcCCCc
Confidence 9999999999999986653
No 312
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=96.84 E-value=0.0013 Score=36.44 Aligned_cols=23 Identities=30% Similarity=0.683 Sum_probs=20.1
Q ss_pred CceEEeecCCCCCeEEEEEeecC
Q psy7616 111 FSITLEKVDRHQAGVYQCTATNG 133 (147)
Q Consensus 111 ~~~~l~~~~~~d~G~Y~C~a~n~ 133 (147)
..|.|.+++.+|+|.|.|.+.+.
T Consensus 71 ~~L~I~~~~~~Dsg~Y~Ca~~~~ 93 (106)
T cd04980 71 FTLTISRVEPEDAAVYYCQQYGT 93 (106)
T ss_pred EEEEECCCChHHCEEEEEEEeCC
Confidence 35888999999999999999764
No 313
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=96.82 E-value=0.027 Score=30.67 Aligned_cols=62 Identities=11% Similarity=0.168 Sum_probs=35.1
Q ss_pred eCCeEEEEEee-cCCCCCceEEEecCCCCCCCce-------eeeccceEEEeecCCCCeEEEEEeecCCC
Q psy7616 24 KGGTITLECKA-SGNPVPSIIWSKKDSSLPSGEK-------SLEGFSITLEKVDRHQAGVYQCTATNGVG 85 (147)
Q Consensus 24 ~g~~~~l~C~~-~~~~~~~v~w~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~g~y~C~~~~~~~ 85 (147)
......+.|.+ .+.|.+.|.|+++......... ..-.+.|.+......+...+.|++.+...
T Consensus 14 ~~~~~va~C~s~~gkP~a~ItW~~~~~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l 83 (95)
T cd05719 14 GEPVTVATCVSANGKPPATISWETTLGGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTL 83 (95)
T ss_pred CCccEEEEEECCCCcCCCEEEEEeCCCCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCccc
Confidence 34456788987 5678899999997211110000 11122344433333444569999988653
No 314
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=96.81 E-value=0.0063 Score=33.06 Aligned_cols=61 Identities=23% Similarity=0.333 Sum_probs=35.5
Q ss_pred eCCeEEEEEeecCC-CC-CceEEEecCCCCCCCce-----eeecc------ceEEEeecCCCCeEEEEEeecCC
Q psy7616 24 KGGTITLECKASGN-PV-PSIIWSKKDSSLPSGEK-----SLEGF------SITLEKVDRHQAGVYQCTATNGV 84 (147)
Q Consensus 24 ~g~~~~l~C~~~~~-~~-~~v~w~~~~~~~~~~~~-----~~~~~------~l~~~~~~~~~~g~y~C~~~~~~ 84 (147)
..+.+.|.|.+.+. |. ..+.|.+++..+..... ..... .|.+......+...|.|.+.+..
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~ 86 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQG 86 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECC
Confidence 45668999999885 43 45899999877532211 11111 23232222234567999998753
No 315
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.80 E-value=0.0074 Score=32.95 Aligned_cols=29 Identities=10% Similarity=0.369 Sum_probs=22.0
Q ss_pred EEeeCCeEEEEEeecCC-CCC--ceEEEecCC
Q psy7616 21 TVRKGGTITLECKASGN-PVP--SIIWSKKDS 49 (147)
Q Consensus 21 ~~~~g~~~~l~C~~~~~-~~~--~v~w~~~~~ 49 (147)
.+..|+..+|.|.+.+. .++ .+.|.++++
T Consensus 10 ~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~ 41 (96)
T cd07696 10 QLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSG 41 (96)
T ss_pred HhccCCCeEEEEEEeCCCCCCCcEEEEEECCe
Confidence 34568889999999887 333 489999864
No 316
>KOG3515|consensus
Probab=96.80 E-value=0.0075 Score=44.36 Aligned_cols=65 Identities=20% Similarity=0.316 Sum_probs=41.8
Q ss_pred eEEeeCCeEEEEEee-cCCCCCceEEEecCCCCCCCcee---------eeccceEEEeecCCCCeEEEEEeecCC
Q psy7616 20 LTVRKGGTITLECKA-SGNPVPSIIWSKKDSSLPSGEKS---------LEGFSITLEKVDRHQAGVYQCTATNGV 84 (147)
Q Consensus 20 ~~~~~g~~~~l~C~~-~~~~~~~v~w~~~~~~~~~~~~~---------~~~~~l~~~~~~~~~~g~y~C~~~~~~ 84 (147)
..+..|+...+.|.. .+.+...+.|+++.......... .......+......+.|.+.|.+.+..
T Consensus 310 ~~ls~g~s~r~~c~~sss~p~~~i~w~~~~~~~~~~~~~~~~t~~~~~v~~~~~~~q~~~~~~~g~v~c~a~~~~ 384 (741)
T KOG3515|consen 310 SGLSSGRSARSSCVSSSSKPPAHIAWYKDTKMPKGSQKASSKTSNMGGVAVISHYAQPSSQQDGGQVTCPADNLE 384 (741)
T ss_pred cccccccccccceeccCCCCccceeeeccCcccccccCcccCCCcccceeeEEeeecccchhcCceEEccccccc
Confidence 457778888888875 45577789999966544321110 111123344556788899999998755
No 317
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=96.77 E-value=0.014 Score=31.85 Aligned_cols=61 Identities=23% Similarity=0.383 Sum_probs=38.4
Q ss_pred EEeeCCeEEEEEeecCC-CC--CceEEEecCCCCCCCceee---------eccceEEEeecCCCCe-EEEEEeec
Q psy7616 21 TVRKGGTITLECKASGN-PV--PSIIWSKKDSSLPSGEKSL---------EGFSITLEKVDRHQAG-VYQCTATN 82 (147)
Q Consensus 21 ~~~~g~~~~l~C~~~~~-~~--~~v~w~~~~~~~~~~~~~~---------~~~~l~~~~~~~~~~g-~y~C~~~~ 82 (147)
.+..|..+++.|.+.+. |. ..+.|+++...+....... ....+.|.. +++|.| .|.|++.-
T Consensus 11 ~l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftp-treD~g~~fsC~A~L 84 (99)
T cd07689 11 PLEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTP-TIEDIGKVLVCRAKL 84 (99)
T ss_pred cccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEec-chhhCCcEEEEEEEE
Confidence 35799999999998653 33 4588988776553322111 122344433 477776 69998864
No 318
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=96.76 E-value=0.0015 Score=36.48 Aligned_cols=25 Identities=24% Similarity=0.497 Sum_probs=21.6
Q ss_pred CCceEEeecCCCCCeEEEEEeecCC
Q psy7616 110 GFSITLEKVDRHQAGVYQCTATNGV 134 (147)
Q Consensus 110 ~~~~~l~~~~~~d~G~Y~C~a~n~~ 134 (147)
...|.+.+++.+|+|.|.|.+.+..
T Consensus 71 ~~~L~I~~~~~~Dsg~Y~Ca~~~~~ 95 (110)
T cd05899 71 RSSLTIKSAEPEDSAVYLCASSLGG 95 (110)
T ss_pred ccEEEECCCChhhCEEEEEEeeCCC
Confidence 4568889999999999999998753
No 319
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=96.73 E-value=0.0017 Score=36.10 Aligned_cols=22 Identities=18% Similarity=0.579 Sum_probs=19.3
Q ss_pred ceEEeecCCCCCeEEEEEeecC
Q psy7616 112 SITLEKVDRHQAGVYQCTATNG 133 (147)
Q Consensus 112 ~~~l~~~~~~d~G~Y~C~a~n~ 133 (147)
.|+|.+++.+|+|.|.|...+.
T Consensus 73 ~L~I~~~~~~Dsg~YyCa~~~~ 94 (107)
T cd07700 73 RLHINRVKPEDSGTYFCMTVGS 94 (107)
T ss_pred EEEECCCCHHHCEEEEEeEcCC
Confidence 5888999999999999998644
No 320
>PHA02633 hypothetical protein; Provisional
Probab=96.57 E-value=0.014 Score=28.88 Aligned_cols=40 Identities=13% Similarity=0.285 Sum_probs=28.7
Q ss_pred eccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEEEeee
Q psy7616 59 EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCK 99 (147)
Q Consensus 59 ~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~ 99 (147)
....|.|-++..+|+|.|.|...+..... ...+.+.|...
T Consensus 16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c~-~~si~l~V~~~ 55 (63)
T PHA02633 16 NCNNMLILNPTQSDSGIYMCITKNETYSD-MMKFDLCICLR 55 (63)
T ss_pred ccccEEEeccccccCcEEEEEEcCCCeeE-EEEEEEEEeec
Confidence 45568888999999999999998765443 44555655443
No 321
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=96.55 E-value=0.0055 Score=33.26 Aligned_cols=35 Identities=23% Similarity=0.342 Sum_probs=24.1
Q ss_pred ceEEeecCCCCCeEEEEEeecCC----CCCcCeeeEEEE
Q psy7616 112 SITLEKVDRHQAGVYQCTATNGV----GDPVTVDMTLEV 146 (147)
Q Consensus 112 ~~~l~~~~~~d~G~Y~C~a~n~~----g~~~~~~~~l~V 146 (147)
.+.|..++.+|+|.|.|.+.... -+..|..+.|.|
T Consensus 56 ~f~I~~~~~~~~G~Y~C~~~~~~~~~~wS~~Sdpl~l~V 94 (94)
T cd05711 56 SFPLGPVTPAHAGTYRCYGSYNHSLYEWSAPSDPLKIVV 94 (94)
T ss_pred EEEecCCCcccCEEEEEEEECCCCCccccCCCCCeEEeC
Confidence 45678999999999999975321 112366666654
No 322
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.52 E-value=0.017 Score=31.68 Aligned_cols=42 Identities=19% Similarity=0.361 Sum_probs=27.6
Q ss_pred CCceEEcCCCCceEEeeCCeEEEEEeecCCC---CCceEEEecCCC
Q psy7616 8 PPSIRTSPSNGQLTVRKGGTITLECKASGNP---VPSIIWSKKDSS 50 (147)
Q Consensus 8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~---~~~v~w~~~~~~ 50 (147)
.|.+.+.+++.. .+..+..+.|.|.+.+.- ...|.|.+++..
T Consensus 3 ~PsV~l~pPs~e-~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~ 47 (99)
T cd04986 3 KPSLSLQRPALE-DLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK 47 (99)
T ss_pred CCEEEEECcChH-HhCcCCccEEEEEEeccCCCCCeEEEEEECCcc
Confidence 455555444321 344678899999988744 235999998865
No 323
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=96.52 E-value=0.014 Score=29.57 Aligned_cols=50 Identities=20% Similarity=0.466 Sum_probs=33.4
Q ss_pred eCCeEEEEEeecCCCCCceEEEecCCCCCCCceeeeccceEEEeecCCCCeEEEEEeec
Q psy7616 24 KGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATN 82 (147)
Q Consensus 24 ~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~ 82 (147)
..+.+.|.|.. ..++.|++ +..+... .+..+.+......-.|.|.|.+.+
T Consensus 5 ~~~~V~L~C~~----~tsi~W~k-G~~~~~~----~~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 5 SEGKVFLKCNG----ATNITWKK-GKEILEV----SNTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred cCceEEEEecC----CCcEEEec-Ccccccc----cccEEeccCcccCCCcceEecCcc
Confidence 44578999955 24599999 4333211 144566666666778999998866
No 324
>smart00406 IGv Immunoglobulin V-Type.
Probab=96.48 E-value=0.0013 Score=34.20 Aligned_cols=21 Identities=24% Similarity=0.600 Sum_probs=17.8
Q ss_pred CCceEEeecCCCCCeEEEEEe
Q psy7616 110 GFSITLEKVDRHQAGVYQCTA 130 (147)
Q Consensus 110 ~~~~~l~~~~~~d~G~Y~C~a 130 (147)
..+|.|.+++.+|+|.|.|.+
T Consensus 61 ~~~L~i~~~~~~D~G~Y~C~v 81 (81)
T smart00406 61 DVSLTISNLRVEDTGTYYCAV 81 (81)
T ss_pred EEEEEEcCCCHHHCEEEEEcC
Confidence 345888999999999999963
No 325
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=96.45 E-value=0.054 Score=29.50 Aligned_cols=59 Identities=14% Similarity=0.188 Sum_probs=33.7
Q ss_pred eEEEEEeec-CCCCCceEEEecCCCCCCCce-------eeeccceEEEeecCCCCeEEEEEeecCCC
Q psy7616 27 TITLECKAS-GNPVPSIIWSKKDSSLPSGEK-------SLEGFSITLEKVDRHQAGVYQCTATNGVG 85 (147)
Q Consensus 27 ~~~l~C~~~-~~~~~~v~w~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~g~y~C~~~~~~~ 85 (147)
-+.+.|.+. +.|.+.|.|+++......... ..-.+.|.+......+...+.|++.+...
T Consensus 17 ~~va~C~s~~gkPaa~IsW~~~~~g~~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al 83 (95)
T cd07703 17 VPVAKCVSANGRPPARISWSSTLGGNANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETL 83 (95)
T ss_pred cEEEEEEcCCCCCCcEEEEEcCCCCCeeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCccc
Confidence 467899865 668889999987322111010 01122344433333445569999998653
No 326
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=96.43 E-value=0.016 Score=31.60 Aligned_cols=31 Identities=19% Similarity=0.297 Sum_probs=22.6
Q ss_pred EeeCCeEEEEEeecCC-CC-CceEEEecCCCCC
Q psy7616 22 VRKGGTITLECKASGN-PV-PSIIWSKKDSSLP 52 (147)
Q Consensus 22 ~~~g~~~~l~C~~~~~-~~-~~v~w~~~~~~~~ 52 (147)
+..+...+|.|.+.+. |. ..+.|.+++..+.
T Consensus 13 ~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~ 45 (96)
T cd07697 13 IEKQGQGIYLCLLENFFPDVIQVHWREGNSPSI 45 (96)
T ss_pred HccCCCEEEEEEEEEEeCCCeEEEEEECCEECc
Confidence 3345678999999885 33 3589999987653
No 327
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=96.36 E-value=0.064 Score=29.33 Aligned_cols=65 Identities=15% Similarity=0.295 Sum_probs=37.5
Q ss_pred eEEeeCCeEEE-EEee-cCCCCCceEEEecCCCCCCCc-e------eeeccceEEEeecCCCCeEEEEEeecCC
Q psy7616 20 LTVRKGGTITL-ECKA-SGNPVPSIIWSKKDSSLPSGE-K------SLEGFSITLEKVDRHQAGVYQCTATNGV 84 (147)
Q Consensus 20 ~~~~~g~~~~l-~C~~-~~~~~~~v~w~~~~~~~~~~~-~------~~~~~~l~~~~~~~~~~g~y~C~~~~~~ 84 (147)
..+..|+.+.+ .|.+ .+.|.+.+.|+.+........ . ..-.+.+.+......+...+.|.+.+..
T Consensus 11 ~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~a 84 (97)
T cd07704 11 LLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPA 84 (97)
T ss_pred eEeecCcceeEEEEEccCCccCCEeEEeCCCCCccceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCcc
Confidence 45667778777 8875 567889999997643221100 0 0111233333333345556899998764
No 328
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=96.32 E-value=0.019 Score=30.23 Aligned_cols=58 Identities=28% Similarity=0.539 Sum_probs=35.7
Q ss_pred eCCeEEEEEeecCC-CCC-ceEEEecCCCCCCCce----e-ee------ccceEEEeecCCCCeEEEEEeecCC
Q psy7616 24 KGGTITLECKASGN-PVP-SIIWSKKDSSLPSGEK----S-LE------GFSITLEKVDRHQAGVYQCTATNGV 84 (147)
Q Consensus 24 ~g~~~~l~C~~~~~-~~~-~v~w~~~~~~~~~~~~----~-~~------~~~l~~~~~~~~~~g~y~C~~~~~~ 84 (147)
.++.+.|.|.+.+. |.. .|.|.+++..+..... . .. .+.+.+. ..+...|.|.+.+..
T Consensus 7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~ 77 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHES 77 (83)
T ss_dssp STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETT
T ss_pred CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECC
Confidence 47889999998875 433 5999999876543221 1 01 1123332 444557999988754
No 329
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=96.12 E-value=0.0055 Score=34.51 Aligned_cols=24 Identities=13% Similarity=0.447 Sum_probs=20.4
Q ss_pred CCceEEeecCCCCCeEEEEEeecC
Q psy7616 110 GFSITLEKVDRHQAGVYQCTATNG 133 (147)
Q Consensus 110 ~~~~~l~~~~~~d~G~Y~C~a~n~ 133 (147)
...|.|.+++.+|+|.|.|.+...
T Consensus 76 ~~~L~I~~~~~~Dsg~Y~C~~~~~ 99 (116)
T cd04982 76 TSTLTIQNLEKEDSATYYCAYWES 99 (116)
T ss_pred EEEEEEEECCHHHCEEEEEEEecC
Confidence 346888999999999999999753
No 330
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=96.07 E-value=0.014 Score=31.17 Aligned_cols=37 Identities=14% Similarity=0.410 Sum_probs=26.9
Q ss_pred cCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616 109 EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 146 (147)
Q Consensus 109 ~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V 146 (147)
.+.+|.+.+++..|+|..+|.+.-... .....+.+.|
T Consensus 49 ~~ktL~~~qv~~qdSG~WtC~V~~~~k-~~~~~~~V~V 85 (88)
T cd07694 49 DKKTLNLVQLGPNDSGTWDCIVSVNSS-EKTLKLDIKV 85 (88)
T ss_pred CccEEEeceeCcccCCEEEEEEEECce-EEEEEeeEEE
Confidence 567889999999999999999974422 2244555555
No 331
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=96.03 E-value=0.018 Score=32.47 Aligned_cols=67 Identities=21% Similarity=0.409 Sum_probs=44.4
Q ss_pred ceEEeeCCeEEEEEeecCCC----CCceEEEecCC--C-------------CC-CCcee-----------eeccceEEEe
Q psy7616 19 QLTVRKGGTITLECKASGNP----VPSIIWSKKDS--S-------------LP-SGEKS-----------LEGFSITLEK 67 (147)
Q Consensus 19 ~~~~~~g~~~~l~C~~~~~~----~~~v~w~~~~~--~-------------~~-~~~~~-----------~~~~~l~~~~ 67 (147)
.+.+..|+.++|.|...... ...+.|++... . .. ..... .....|.|.+
T Consensus 7 ~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 86 (116)
T cd05715 7 EVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVIHN 86 (116)
T ss_pred eEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEEee
Confidence 55788999999999875432 24599986321 0 00 00000 0124689999
Q ss_pred ecCCCCeEEEEEeecCCC
Q psy7616 68 VDRHQAGVYQCTATNGVG 85 (147)
Q Consensus 68 ~~~~~~g~y~C~~~~~~~ 85 (147)
++.+|+|.|.|.+.+...
T Consensus 87 v~~~D~G~Y~C~v~~~~~ 104 (116)
T cd05715 87 LQFTDNGTYTCDVKNPPD 104 (116)
T ss_pred CCcccCEEEEEEEEeCCC
Confidence 999999999999987544
No 332
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=96.00 E-value=0.017 Score=32.61 Aligned_cols=67 Identities=21% Similarity=0.459 Sum_probs=44.6
Q ss_pred ceEEeeCCeEEEEEeecCCC----CCceEEEec---CCC---C----------CCCc---ee-------eeccceEEEee
Q psy7616 19 QLTVRKGGTITLECKASGNP----VPSIIWSKK---DSS---L----------PSGE---KS-------LEGFSITLEKV 68 (147)
Q Consensus 19 ~~~~~~g~~~~l~C~~~~~~----~~~v~w~~~---~~~---~----------~~~~---~~-------~~~~~l~~~~~ 68 (147)
.+.+..|+++.|.|.....+ ...+.|++. +.. + .... +. .....|.|.++
T Consensus 7 ~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~~v 86 (115)
T cd05880 7 EVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIWQL 86 (115)
T ss_pred eEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEeeC
Confidence 56889999999999865432 235999752 111 0 0000 00 12346999999
Q ss_pred cCCCCeEEEEEeecCCC
Q psy7616 69 DRHQAGVYQCTATNGVG 85 (147)
Q Consensus 69 ~~~~~g~y~C~~~~~~~ 85 (147)
+.+|+|.|.|.+.+...
T Consensus 87 ~~~D~G~Y~C~v~~~~~ 103 (115)
T cd05880 87 QPTDNGTYTCQVKNPPD 103 (115)
T ss_pred ChhhCEEEEEEEEeCCC
Confidence 99999999999987544
No 333
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=95.99 E-value=0.01 Score=32.90 Aligned_cols=65 Identities=25% Similarity=0.504 Sum_probs=46.2
Q ss_pred ceEEeeCCeEEEEEeec-CCCCCceEEEecCCCC-----C----C------------Cceee-----eccceEEEeecCC
Q psy7616 19 QLTVRKGGTITLECKAS-GNPVPSIIWSKKDSSL-----P----S------------GEKSL-----EGFSITLEKVDRH 71 (147)
Q Consensus 19 ~~~~~~g~~~~l~C~~~-~~~~~~v~w~~~~~~~-----~----~------------~~~~~-----~~~~l~~~~~~~~ 71 (147)
.+.+..|+++.|.|... ......+.|++..... . . ..... ....|.|.+++..
T Consensus 10 ~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~~~ 89 (114)
T PF07686_consen 10 PVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQPS 89 (114)
T ss_dssp EEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSESGG
T ss_pred eEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCCcC
Confidence 56888999999999987 4455679999944310 0 0 00011 1235999999999
Q ss_pred CCeEEEEEeecC
Q psy7616 72 QAGVYQCTATNG 83 (147)
Q Consensus 72 ~~g~y~C~~~~~ 83 (147)
|+|.|.|.+...
T Consensus 90 DsG~Y~C~v~~~ 101 (114)
T PF07686_consen 90 DSGTYFCQVSTS 101 (114)
T ss_dssp GEEEEEEEEEES
T ss_pred cCEEEEEEEEEC
Confidence 999999998876
No 334
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=95.96 E-value=0.13 Score=29.07 Aligned_cols=29 Identities=17% Similarity=0.158 Sum_probs=21.4
Q ss_pred eEEeeCCeEEEEEeecCCCC---CceEEEecC
Q psy7616 20 LTVRKGGTITLECKASGNPV---PSIIWSKKD 48 (147)
Q Consensus 20 ~~~~~g~~~~l~C~~~~~~~---~~v~w~~~~ 48 (147)
..+..|..+.|.|...+... ..+.|.+..
T Consensus 8 ~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~ 39 (115)
T cd05721 8 VLASSNGAASLVCEYTYNGFSKEFRASLLKGA 39 (115)
T ss_pred eEEcCCCCEEEEEEecCCccccEEEEEEEEeC
Confidence 36778889999999866432 358888864
No 335
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=95.95 E-value=0.01 Score=33.70 Aligned_cols=23 Identities=17% Similarity=0.315 Sum_probs=20.1
Q ss_pred CceEEeecCCCCCeEEEEEeecC
Q psy7616 111 FSITLEKVDRHQAGVYQCTATNG 133 (147)
Q Consensus 111 ~~~~l~~~~~~d~G~Y~C~a~n~ 133 (147)
.+|.|.+++.+|+|.|.|.+...
T Consensus 80 ~sL~I~~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 80 CSLLISDAQPEDSGKYFFRVELG 102 (119)
T ss_pred EEEEEccCChhhCeEEEEEEEcC
Confidence 46888999999999999998664
No 336
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=95.91 E-value=0.0053 Score=34.61 Aligned_cols=23 Identities=17% Similarity=0.385 Sum_probs=20.2
Q ss_pred CceEEeecCCCCCeEEEEEeecC
Q psy7616 111 FSITLEKVDRHQAGVYQCTATNG 133 (147)
Q Consensus 111 ~~~~l~~~~~~d~G~Y~C~a~n~ 133 (147)
.+|.|.+++.+|+|.|.|.+...
T Consensus 72 ~sL~I~~~~~~Dsg~Y~C~~~~~ 94 (116)
T cd07706 72 ISLTISALQLEDSAKYFCALSTL 94 (116)
T ss_pred EEEEECCCCHHHCEEEEEEEECC
Confidence 46888999999999999999853
No 337
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=95.56 E-value=0.017 Score=28.33 Aligned_cols=25 Identities=28% Similarity=0.613 Sum_probs=21.1
Q ss_pred CCceEEeecCCCCCeEEEEEeecCC
Q psy7616 110 GFSITLEKVDRHQAGVYQCTATNGV 134 (147)
Q Consensus 110 ~~~~~l~~~~~~d~G~Y~C~a~n~~ 134 (147)
...+.+.+++..|.|.|.|.+.+..
T Consensus 42 ~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 42 SSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred EEEEEECccCcccCcEEEEEEecCc
Confidence 4457778889999999999998876
No 338
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=95.43 E-value=0.043 Score=27.54 Aligned_cols=39 Identities=26% Similarity=0.203 Sum_probs=24.6
Q ss_pred EEEEeee---ecCCCCcc-----ccCCceEEeecCCCCCeEEEEEeec
Q psy7616 93 TLEVLCK---ILPSGEKS-----LEGFSITLEKVDRHQAGVYQCTATN 132 (147)
Q Consensus 93 ~l~v~~~---~~~~~~~~-----~~~~~~~l~~~~~~d~G~Y~C~a~n 132 (147)
.+.+.+| ..+.|.++ ..+..+.+.+-. +++|.|.|.+.+
T Consensus 9 tVtlTCP~~~~~i~W~~n~~~~~g~~~~~~~~~~~-e~~G~Y~C~~~~ 55 (65)
T cd07692 9 TVTVTCPLSGDDIKWKKNDQVSQGSDEKYLSLNHF-SSSGYYHCTADN 55 (65)
T ss_pred EEEEECCCCCCCceEEeCCccCCCCCceEEeeccC-CCCceEEEEeCC
Confidence 3445555 44666665 223345555666 899999999953
No 339
>PHA03042 CD47-like protein; Provisional
Probab=95.38 E-value=0.13 Score=33.46 Aligned_cols=63 Identities=17% Similarity=0.267 Sum_probs=40.2
Q ss_pred EeeCCeEEEEEeecCC-----CCCceEEEecCCCCCCCceeeeccceEEEeecCCCCeEEEEEeecCCCC
Q psy7616 22 VRKGGTITLECKASGN-----PVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGD 86 (147)
Q Consensus 22 ~~~g~~~~l~C~~~~~-----~~~~v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~ 86 (147)
-.-++.+.++|..... ....+.|..++...-..... +..++.+...+ .-.|+|+|.+.+...+
T Consensus 28 T~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t-n~aSL~~~f~~-~l~GNYTCEv~~l~n~ 95 (286)
T PHA03042 28 TTCNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT-NTSSLKFNFSK-NLSGNYTCEAINKFNK 95 (286)
T ss_pred EecCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC-cceEEEEeccc-cCCCceeEEEeecccC
Confidence 3468889999987542 23459999988665322222 33456554443 3479999999875444
No 340
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=95.38 E-value=0.01 Score=34.12 Aligned_cols=71 Identities=18% Similarity=0.286 Sum_probs=37.6
Q ss_pred eeCCeEEEEEeecCCC-----CCceEEEecCCCCCC----Cce--------------eeeccceEEEeecCCCCeEEEEE
Q psy7616 23 RKGGTITLECKASGNP-----VPSIIWSKKDSSLPS----GEK--------------SLEGFSITLEKVDRHQAGVYQCT 79 (147)
Q Consensus 23 ~~g~~~~l~C~~~~~~-----~~~v~w~~~~~~~~~----~~~--------------~~~~~~l~~~~~~~~~~g~y~C~ 79 (147)
.-++.+.++|.+.... ...+.|...+..+-. ... ..+..+|.+...+.- .|.|+|.
T Consensus 25 ~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTCe 103 (130)
T PF08204_consen 25 VCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTCE 103 (130)
T ss_dssp TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEEE
T ss_pred ecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEEE
Confidence 3578899999986522 234899998764310 000 112234777765544 7999999
Q ss_pred eecCCCCceEEeEEEE
Q psy7616 80 ATNGVGDPVTVDMTLE 95 (147)
Q Consensus 80 ~~~~~~~~~~~~~~l~ 95 (147)
+.....+. +..+.|.
T Consensus 104 Vt~~~~eg-e~~i~Lk 118 (130)
T PF08204_consen 104 VTELSREG-ETTIELK 118 (130)
T ss_dssp EEETTEEE-EEEEEEE
T ss_pred EEecCCCc-eEEEEEE
Confidence 98765443 4444443
No 341
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=95.35 E-value=0.043 Score=35.34 Aligned_cols=47 Identities=15% Similarity=0.338 Sum_probs=35.2
Q ss_pred CCCceEEEecCCCC-CCCc--eeeeccceEEEeecCCCCeEEEEEeecCC
Q psy7616 38 PVPSIIWSKKDSSL-PSGE--KSLEGFSITLEKVDRHQAGVYQCTATNGV 84 (147)
Q Consensus 38 ~~~~v~w~~~~~~~-~~~~--~~~~~~~l~~~~~~~~~~g~y~C~~~~~~ 84 (147)
..|.+.|..+++.. ..+. ...+.+.|++.+.....+|.|+|.+....
T Consensus 11 iDP~y~W~GP~g~~l~gn~~~nIT~TG~L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 11 IDPTYLWTGPNGKPLSGNSYVNITETGKLMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred CCCceEEECCCCcccCCCCeEEEccCceEEeeccccccCCceEEEEEEEe
Confidence 56889999876554 3332 24466779999999999999999987643
No 342
>PHA03376 BARF1; Provisional
Probab=94.82 E-value=0.033 Score=34.20 Aligned_cols=24 Identities=21% Similarity=0.444 Sum_probs=20.1
Q ss_pred CceEEeecCCCCCeEEEEEeecCC
Q psy7616 111 FSITLEKVDRHQAGVYQCTATNGV 134 (147)
Q Consensus 111 ~~~~l~~~~~~d~G~Y~C~a~n~~ 134 (147)
.++.|.+++.+|.|.|+|..+...
T Consensus 87 vsLvI~~l~lSDdGtY~C~fQkge 110 (221)
T PHA03376 87 FFLVVTAANISHDGNYLCRMKLGE 110 (221)
T ss_pred EEEEEEeeeecCCceEEEEEEcCC
Confidence 356678999999999999997654
No 343
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=94.66 E-value=0.023 Score=32.15 Aligned_cols=21 Identities=19% Similarity=0.415 Sum_probs=19.0
Q ss_pred ceEEeecCCCCCeEEEEEeec
Q psy7616 112 SITLEKVDRHQAGVYQCTATN 132 (147)
Q Consensus 112 ~~~l~~~~~~d~G~Y~C~a~n 132 (147)
.|.+.+++.+|+|.|.|.+..
T Consensus 77 ~L~I~~~~~~Dsa~YyCa~~~ 97 (117)
T cd04981 77 YLQLNSLTPEDTAVYYCARGL 97 (117)
T ss_pred EEEECCCCHHHCEEEEEEEEc
Confidence 588899999999999999865
No 344
>PHA02982 hypothetical protein; Provisional
Probab=94.31 E-value=0.48 Score=29.75 Aligned_cols=28 Identities=11% Similarity=0.376 Sum_probs=19.4
Q ss_pred EEeeCCeEEEEEeecCC-CCCceEEEecC
Q psy7616 21 TVRKGGTITLECKASGN-PVPSIIWSKKD 48 (147)
Q Consensus 21 ~~~~g~~~~l~C~~~~~-~~~~v~w~~~~ 48 (147)
....++++.|.|..... ...+..|+.+.
T Consensus 35 ~a~vd~~V~L~C~~~~~~~i~~~~W~~~~ 63 (251)
T PHA02982 35 NATVDQEVKLQCLFKDADEISRAMWKGDA 63 (251)
T ss_pred hccCCCcEEEEecCCCcchhhhheeeCCC
Confidence 44568999999985432 34568898754
No 345
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=94.28 E-value=0.12 Score=27.35 Aligned_cols=31 Identities=23% Similarity=0.293 Sum_probs=22.1
Q ss_pred ecCCCCCe-EEEEEeecCCCCCcCeeeEEEEC
Q psy7616 117 KVDRHQAG-VYQCTATNGVGDPVTVDMTLEVL 147 (147)
Q Consensus 117 ~~~~~d~G-~Y~C~a~n~~g~~~~~~~~l~V~ 147 (147)
.++.+|.| .|+|.|.|+.-........|+|+
T Consensus 49 ~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~ 80 (82)
T cd05883 49 KVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQ 80 (82)
T ss_pred ECchhhCCCEEEEEEcCcccCCceeeEEEEEE
Confidence 55556665 79999999874445667777774
No 346
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=93.88 E-value=0.057 Score=34.80 Aligned_cols=27 Identities=19% Similarity=0.335 Sum_probs=22.1
Q ss_pred ccCCceEEeecCCCCCeEEEEEeecCC
Q psy7616 108 LEGFSITLEKVDRHQAGVYQCTATNGV 134 (147)
Q Consensus 108 ~~~~~~~l~~~~~~d~G~Y~C~a~n~~ 134 (147)
.+.+.|.+.+.+..++|.|+|..+-..
T Consensus 34 T~TG~L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 34 TETGKLMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred ccCceEEeeccccccCCceEEEEEEEe
Confidence 444569999999999999999986554
No 347
>KOG1480|consensus
Probab=93.68 E-value=0.061 Score=39.84 Aligned_cols=74 Identities=22% Similarity=0.440 Sum_probs=51.6
Q ss_pred EEeeCCeEEEEEe-ecCCCCCceEEEecCCCCCCCc--eeeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEE
Q psy7616 21 TVRKGGTITLECK-ASGNPVPSIIWSKKDSSLPSGE--KSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTL 94 (147)
Q Consensus 21 ~~~~g~~~~l~C~-~~~~~~~~v~w~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l 94 (147)
.+..++.+.+.|. ..+.+...+.|++++....... .......+++..+...|.|.|+|.+.+........++.+
T Consensus 140 ~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~~~~d~~li~~~arlsd~~nytc~a~ni~~~r~~~~~~v 216 (909)
T KOG1480|consen 140 EVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVIRASDHNLIISQARLSDSGNYTCEATNIVAKRKSDPATV 216 (909)
T ss_pred eecccccccccccCcccchhhhhhccccCCCCCccccchhhhcCCccccchhhhhcccceeeeehhhccccccceEE
Confidence 5666777788886 4667788899999886654422 222344577888889999999999998766543333333
No 348
>KOG1480|consensus
Probab=93.56 E-value=0.046 Score=40.45 Aligned_cols=37 Identities=24% Similarity=0.389 Sum_probs=30.6
Q ss_pred CceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616 111 FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 147 (147)
Q Consensus 111 ~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~ 147 (147)
.++++.+++..|.|+|+|+|.|..+..++..+++.||
T Consensus 183 ~~li~~~arlsd~~nytc~a~ni~~~r~~~~~~v~vy 219 (909)
T KOG1480|consen 183 HNLIISQARLSDSGNYTCEATNIVAKRKSDPATVQVY 219 (909)
T ss_pred CCccccchhhhhcccceeeeehhhccccccceEEEEE
Confidence 4566689999999999999999998887777776664
No 349
>PHA03270 envelope glycoprotein C; Provisional
Probab=93.47 E-value=1.7 Score=30.49 Aligned_cols=42 Identities=21% Similarity=0.394 Sum_probs=31.1
Q ss_pred eCCceEEcCCCCceEEeeCCeEEEEEeecCC-CCC--ceEEEecCCCCC
Q psy7616 7 VPPSIRTSPSNGQLTVRKGGTITLECKASGN-PVP--SIIWSKKDSSLP 52 (147)
Q Consensus 7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~--~v~w~~~~~~~~ 52 (147)
-+|.+.+.+. .+..|++..-.|.+... |.. .+.|+.++....
T Consensus 220 r~Psvsv~~~----PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng~~V~ 264 (466)
T PHA03270 220 RRPSLSIRPH----AVLEGEPFGATCVAANYYPGDRAAFRWFEGGDEVF 264 (466)
T ss_pred cCCcccccCC----ccccCCCceEEEEeeeecCCCceEEEEEeCCcccc
Confidence 3667666665 56799999999997654 332 499999998764
No 350
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=92.61 E-value=0.45 Score=26.46 Aligned_cols=38 Identities=21% Similarity=0.419 Sum_probs=28.5
Q ss_pred eccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEEE
Q psy7616 59 EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96 (147)
Q Consensus 59 ~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v 96 (147)
++..|.|+.++..|+|.|.-.+.+..|......+.+.|
T Consensus 69 enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsV 106 (108)
T PF11465_consen 69 ENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSV 106 (108)
T ss_dssp TTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEE
T ss_pred cCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEe
Confidence 45579999999999999999999988876555565554
No 351
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=91.56 E-value=0.44 Score=24.99 Aligned_cols=17 Identities=6% Similarity=0.110 Sum_probs=12.8
Q ss_pred CCCCeEEEEEeecCCCC
Q psy7616 120 RHQAGVYQCTATNGVGD 136 (147)
Q Consensus 120 ~~d~G~Y~C~a~n~~g~ 136 (147)
..|.+.|+|.|.+....
T Consensus 54 ~d~g~~~~C~v~h~~l~ 70 (82)
T cd05761 54 EDDGAPIICRVDHPALK 70 (82)
T ss_pred hhCCCEEEEEEeChhcC
Confidence 34456999999998644
No 352
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=91.26 E-value=0.24 Score=28.61 Aligned_cols=33 Identities=24% Similarity=0.424 Sum_probs=20.2
Q ss_pred CceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEE
Q psy7616 111 FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLE 145 (147)
Q Consensus 111 ~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~ 145 (147)
.+|.+...+.- .|+|+|.+....... +..+.|.
T Consensus 86 aSL~~~~~~a~-~GnYTCeVt~~~~eg-e~~i~Lk 118 (130)
T PF08204_consen 86 ASLKMDKSDAV-EGNYTCEVTELSREG-ETTIELK 118 (130)
T ss_dssp --EEEEHHHHH--EEEEEEEEETTEEE-EEEEEEE
T ss_pred EEEEEcchhcc-ccceEEEEEecCCCc-eEEEEEE
Confidence 35666654444 799999998776555 4455554
No 353
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=90.82 E-value=1.6 Score=23.53 Aligned_cols=59 Identities=22% Similarity=0.467 Sum_probs=34.8
Q ss_pred EEeeCCeEEEEEeecCC-----CCCceEEEecCCCCCCCceee---eccceEEEeecCCCCeEEEEE
Q psy7616 21 TVRKGGTITLECKASGN-----PVPSIIWSKKDSSLPSGEKSL---EGFSITLEKVDRHQAGVYQCT 79 (147)
Q Consensus 21 ~~~~g~~~~l~C~~~~~-----~~~~v~w~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~g~y~C~ 79 (147)
.+..|++++..|..... ....+.|..++..++...+.. ..+...+.+.......-|.|.
T Consensus 14 vv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~qy~~in~~~SsVT~~~~~~~~~~L~cC~ 80 (89)
T PF06328_consen 14 VVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGSQYRVINDTVSSVTLPNLNPTGATLFCCK 80 (89)
T ss_dssp EEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCGCEEEESTTEEEEEESS--SSEEEEEEEE
T ss_pred EEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChhHcceeCCeEEEEEEccCCCCCceEEEEE
Confidence 78999999999986432 345699999888777654432 223445555444333344554
No 354
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=90.32 E-value=0.67 Score=24.40 Aligned_cols=36 Identities=17% Similarity=0.243 Sum_probs=22.6
Q ss_pred CCceEEeecCCCCCeEEEEEe-ecCCCCCcCeeeEEEE
Q psy7616 110 GFSITLEKVDRHQAGVYQCTA-TNGVGDPVTVDMTLEV 146 (147)
Q Consensus 110 ~~~~~l~~~~~~d~G~Y~C~a-~n~~g~~~~~~~~l~V 146 (147)
...+...+...+|+|...|.| .+..-.. .....|.|
T Consensus 42 ~~~~~~~~~~~~d~G~w~C~a~~~~~k~~-~s~~~i~v 78 (80)
T PF05790_consen 42 KKLVSTFTPTTEDSGTWVCTASDNEPKER-ESKIEILV 78 (80)
T ss_dssp SSEEEEESBTCGGSEEEEEEEEECTTEEE-EEEEEEEE
T ss_pred ceEEEEecCCCCCCEEEEEEEcCCceEEE-EEEEEEEc
Confidence 334555777889999999999 4443222 33444444
No 355
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=89.72 E-value=1.9 Score=22.72 Aligned_cols=38 Identities=16% Similarity=0.243 Sum_probs=23.6
Q ss_pred CCceEEEecCCCCCCCceeeeccceEEEeecCCCCeEEEEEee
Q psy7616 39 VPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTAT 81 (147)
Q Consensus 39 ~~~v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~ 81 (147)
.+.+.|+..+.. ................|+|.+.|.+.
T Consensus 26 ~~~~~l~~~~~k-----~~~~~~~~~~~~~~~~d~G~w~C~a~ 63 (80)
T PF05790_consen 26 KPSLFLENPGKK-----SLETKKLVSTFTPTTEDSGTWVCTAS 63 (80)
T ss_dssp CEEEEEECSSCE-----EEEESSEEEEESBTCGGSEEEEEEEE
T ss_pred ChhheeeccCcc-----ccccceEEEEecCCCCCCEEEEEEEc
Confidence 345666554422 12233445566777899999999994
No 356
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=88.50 E-value=4.6 Score=27.59 Aligned_cols=35 Identities=20% Similarity=0.442 Sum_probs=22.4
Q ss_pred eCCceEEcCCCCceEEeeCCeEEEEEeecCC-CC-CceEEEec
Q psy7616 7 VPPSIRTSPSNGQLTVRKGGTITLECKASGN-PV-PSIIWSKK 47 (147)
Q Consensus 7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~~v~w~~~ 47 (147)
+||.+.+...+ ..+ .++|.|.+.|. |. ..+.|.++
T Consensus 202 vpP~V~Vt~k~-----~~~-~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 202 VTPTVKVTGEE-----LGD-NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CCCceEEeccc-----CCC-CceEEEEEEeEeCCccEEEEEec
Confidence 46666554321 122 57999999885 33 34889999
No 357
>PHA03042 CD47-like protein; Provisional
Probab=87.95 E-value=0.64 Score=30.37 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=15.0
Q ss_pred CCeEEEEEeecCCCCCcCeeeEE
Q psy7616 122 QAGVYQCTATNGVGDPVTVDMTL 144 (147)
Q Consensus 122 d~G~Y~C~a~n~~g~~~~~~~~l 144 (147)
-.|+|||+|.+..... ...+.|
T Consensus 81 l~GNYTCEv~~l~n~g-k~~IeL 102 (286)
T PHA03042 81 LSGNYTCEAINKFNKI-KNTIEL 102 (286)
T ss_pred CCCceeEEEeecccCc-cEEEEE
Confidence 3699999998876544 334443
No 358
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=87.87 E-value=0.32 Score=26.84 Aligned_cols=23 Identities=26% Similarity=0.693 Sum_probs=19.4
Q ss_pred ccceEEEeecCCCCeEEEEEeec
Q psy7616 60 GFSITLEKVDRHQAGVYQCTATN 82 (147)
Q Consensus 60 ~~~l~~~~~~~~~~g~y~C~~~~ 82 (147)
...|.|.+++.+|+|.|.|.+..
T Consensus 68 ~~~L~I~~~~~sDsgtY~Ca~~~ 90 (104)
T cd05720 68 SFVLTLKNFQKENEGYYFCSVAS 90 (104)
T ss_pred EEEEEECCCCHHHCEEEEEEEcc
Confidence 34689999999999999998753
No 359
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=85.67 E-value=5 Score=28.10 Aligned_cols=65 Identities=22% Similarity=0.447 Sum_probs=45.5
Q ss_pred ceEEeeCCeEEEEEeec--C-CCCCceEEEecCCCCCC------------------Cce----------eeeccceEEEe
Q psy7616 19 QLTVRKGGTITLECKAS--G-NPVPSIIWSKKDSSLPS------------------GEK----------SLEGFSITLEK 67 (147)
Q Consensus 19 ~~~~~~g~~~~l~C~~~--~-~~~~~v~w~~~~~~~~~------------------~~~----------~~~~~~l~~~~ 67 (147)
++.+..|..+.+.|... | ....++.|+..+-+..+ ... -..+++|.|++
T Consensus 273 ~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkk 352 (500)
T PHA02914 273 EVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKK 352 (500)
T ss_pred eeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeee
Confidence 56777799999999853 2 23456889987644321 000 11456899999
Q ss_pred ecCCCCeEEEEEeecC
Q psy7616 68 VDRHQAGVYQCTATNG 83 (147)
Q Consensus 68 ~~~~~~g~y~C~~~~~ 83 (147)
+.....|-|.|.+...
T Consensus 353 a~I~N~GCY~~~a~~g 368 (500)
T PHA02914 353 AHINNAGCYEAQAFMG 368 (500)
T ss_pred EEEEcCCceEEEEecC
Confidence 9999999999998754
No 360
>PHA03052 Hypothetical protein; Provisional
Probab=85.41 E-value=3.4 Score=20.94 Aligned_cols=33 Identities=18% Similarity=0.436 Sum_probs=23.9
Q ss_pred ceEEeeCCeEEEEEeec---CCCCCceEEEecCCCC
Q psy7616 19 QLTVRKGGTITLECKAS---GNPVPSIIWSKKDSSL 51 (147)
Q Consensus 19 ~~~~~~g~~~~l~C~~~---~~~~~~v~w~~~~~~~ 51 (147)
.+.+..|+++++.|.+. +...+.+.|..++...
T Consensus 6 ~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~ 41 (69)
T PHA03052 6 GIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYY 41 (69)
T ss_pred cEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEE
Confidence 55788999999999962 3344567888776554
No 361
>KOG4597|consensus
Probab=85.38 E-value=2.6 Score=30.07 Aligned_cols=75 Identities=16% Similarity=0.178 Sum_probs=51.2
Q ss_pred EEeeCCeEEEEEeecCCCCCceEEEec--CCCC---CCC-----ceeeeccceEEEeecCCCCeEEEEEeecCCCCceEE
Q psy7616 21 TVRKGGTITLECKASGNPVPSIIWSKK--DSSL---PSG-----EKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTV 90 (147)
Q Consensus 21 ~~~~g~~~~l~C~~~~~~~~~v~w~~~--~~~~---~~~-----~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~ 90 (147)
.+..++...+.|...|.+.+.|.|.+- ++.. ..+ ......-.|.|-+....++|-|.|.+.+..+.. .+
T Consensus 207 ~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~~-~r 285 (560)
T KOG4597|consen 207 FVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAGFL-RR 285 (560)
T ss_pred hcccchhhcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeecccccccee-ec
Confidence 556788889999999999999999862 1111 111 112233357788888999999999999877763 55
Q ss_pred eEEEEE
Q psy7616 91 DMTLEV 96 (147)
Q Consensus 91 ~~~l~v 96 (147)
.+.+.+
T Consensus 286 dv~c~s 291 (560)
T KOG4597|consen 286 DVPCSS 291 (560)
T ss_pred cceeee
Confidence 444443
No 362
>PHA03282 envelope glycoprotein E; Provisional
Probab=82.64 E-value=3.5 Score=29.38 Aligned_cols=39 Identities=13% Similarity=0.215 Sum_probs=26.3
Q ss_pred ccCCceEEeecCCCCCeEEEEEeecCCCCC-cCeeeEEEE
Q psy7616 108 LEGFSITLEKVDRHQAGVYQCTATNGVGDP-VTVDMTLEV 146 (147)
Q Consensus 108 ~~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~-~~~~~~l~V 146 (147)
....+|.|.+++.+|+|.|+-.+...-... +...+.|.|
T Consensus 121 ~~n~tl~l~~a~~~DsG~Y~L~~~~~~~~~~~~~~v~l~V 160 (540)
T PHA03282 121 VVNGTLVLREARETDSGMYVLSVSRAPNSTAARAVVFLVV 160 (540)
T ss_pred EecceEEEeeccccCCceEEEEecCCCCchhheEEEEEEe
Confidence 446679999999999999999864332222 233355544
No 363
>PHA03283 envelope glycoprotein E; Provisional
Probab=78.84 E-value=23 Score=25.92 Aligned_cols=39 Identities=15% Similarity=0.112 Sum_probs=26.4
Q ss_pred eccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEEEee
Q psy7616 59 EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLC 98 (147)
Q Consensus 59 ~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~ 98 (147)
..+.+.|.+++..++|.|.--..+..+ .....+.+++..
T Consensus 132 ~~~~l~I~~at~~~aGVYtly~r~d~~-~~~~vflvtVk~ 170 (542)
T PHA03283 132 ERSVLQIQRATPNIAGVYTLHVSSDGM-MKHSVFFVTVKK 170 (542)
T ss_pred CCCeeEEEecccccCeEEEEEecCCCc-eEEEEEEEEecC
Confidence 345688999999999999876665444 224445566554
No 364
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=76.79 E-value=9.9 Score=20.64 Aligned_cols=77 Identities=17% Similarity=0.164 Sum_probs=42.3
Q ss_pred ceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCceeeecc--ceEEEeecCCCCeEEEEEeecCCCCceEEeEEEEE
Q psy7616 19 QLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGF--SITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96 (147)
Q Consensus 19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v 96 (147)
...+..|+++.++|...=..+..+.|...-.+ ..-..... .+.+.+++. .....|.+.-. +....+.+.+++
T Consensus 12 ~~vV~~G~Sv~VNCStsC~~p~~~GLET~L~k---~~~~~g~~W~~f~LsnV~~--ds~~~C~~~C~-g~Q~~~~~~ItV 85 (91)
T PF03921_consen 12 EPVVPPGGSVWVNCSTSCPQPEKIGLETSLSK---TELDSGPQWKAFQLSNVTE--DSSPLCFFNCS-GEQSSASANITV 85 (91)
T ss_dssp EEEEETTEEEEEEEEESSSS-SEEEEESSSEE---EEEEEETTEEEEEEEEE-S--CEEEEEEEEET-TEEEEEEEEEEE
T ss_pred ccEECCCCCEEEEEcCCCCCCCcceEEEecCC---cccCCCCcEEEEEEEcccc--CCeEEEEEEcC-CeEEEeEEeeEE
Confidence 56889999999999874322223455433211 11111111 355667764 45678887754 333467777888
Q ss_pred eeeec
Q psy7616 97 LCKIL 101 (147)
Q Consensus 97 ~~~~~ 101 (147)
..+|+
T Consensus 86 Y~~Pe 90 (91)
T PF03921_consen 86 YKPPE 90 (91)
T ss_dssp EB--S
T ss_pred eCCCC
Confidence 77764
No 365
>KOG4597|consensus
Probab=75.21 E-value=2.6 Score=30.07 Aligned_cols=33 Identities=24% Similarity=0.344 Sum_probs=26.3
Q ss_pred eEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616 113 ITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 146 (147)
Q Consensus 113 ~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V 146 (147)
+.+-+....|+|-|+|.+.|..|.. .+.+.+.+
T Consensus 259 l~ic~ewq~~a~w~tCs~rcg~g~~-~rdv~c~s 291 (560)
T KOG4597|consen 259 LVICNEWQADAGWYTCSARCGAGFL-RRDVPCSS 291 (560)
T ss_pred EEEcchhhcCCCceeecccccccee-eccceeee
Confidence 4446778899999999999999977 66666554
No 366
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=75.20 E-value=12 Score=22.70 Aligned_cols=37 Identities=11% Similarity=0.144 Sum_probs=26.4
Q ss_pred ccCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEE
Q psy7616 108 LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLE 145 (147)
Q Consensus 108 ~~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~ 145 (147)
..+--+.+++.+.+|+|.|.-.++-..... ..-+.+.
T Consensus 121 ~~~~lL~i~~p~~~dsG~Y~lRV~l~~~~~-~d~F~~~ 157 (161)
T PF01688_consen 121 ENGVLLRIRNPRPEDSGIYYLRVWLDGANK-ADVFRLS 157 (161)
T ss_pred CcceEEEeCCCCcccceEEEEEEEECCCCC-CcEEEEe
Confidence 334457889999999999999998775433 4444444
No 367
>COG5475 Uncharacterized small protein [Function unknown]
Probab=74.22 E-value=4.3 Score=19.63 Aligned_cols=14 Identities=36% Similarity=0.809 Sum_probs=12.7
Q ss_pred eEEEEEeecCCCCC
Q psy7616 124 GVYQCTATNGVGDP 137 (147)
Q Consensus 124 G~Y~C~a~n~~g~~ 137 (147)
|.|.|..-+..|..
T Consensus 29 Gmy~C~Wf~g~g~~ 42 (60)
T COG5475 29 GMYECRWFDGYGVK 42 (60)
T ss_pred CeEEEEEecCCCcc
Confidence 99999999998865
No 368
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=73.69 E-value=29 Score=24.59 Aligned_cols=77 Identities=14% Similarity=0.274 Sum_probs=44.4
Q ss_pred ceEEeeCCeE-EEEEeecCCC-CCceEEEecCCCCCCCce-----------------eeeccceEEEeecCCCCeEEEEE
Q psy7616 19 QLTVRKGGTI-TLECKASGNP-VPSIIWSKKDSSLPSGEK-----------------SLEGFSITLEKVDRHQAGVYQCT 79 (147)
Q Consensus 19 ~~~~~~g~~~-~l~C~~~~~~-~~~v~w~~~~~~~~~~~~-----------------~~~~~~l~~~~~~~~~~g~y~C~ 79 (147)
++.+..|+.. .+.|..++.. .-.+...+++..-..... ....-.+.+.+++..|.|.|+|.
T Consensus 20 nIi~~~gd~~~nlTCiLP~~~~ADkvIviKGn~~~nt~ki~~sI~Nag~dn~CyCGd~dkeYsf~~~Nvs~sdEGrYrCI 99 (500)
T PHA02914 20 NIFLRNEDEELALTCILPAAKMADKVVLIKGNDMNNTKEIESSINNAGEDNVCYCGDPDKEYSFIEENIGEHEDGDFKCI 99 (500)
T ss_pred eEEEecCceEEeeEEEcCCCccccEEEEEeccCCCCeeEEEEeccCCCCCCccccCCCcceeEEEecCcccccCCcEEEE
Confidence 4556666766 8999876543 334666664432111000 01223567788999999999999
Q ss_pred eecCCCCceEEeEEEE
Q psy7616 80 ATNGVGDPVTVDMTLE 95 (147)
Q Consensus 80 ~~~~~~~~~~~~~~l~ 95 (147)
......+..+..+.+.
T Consensus 100 FYLn~~EtyrH~I~vr 115 (500)
T PHA02914 100 FYLGDNESHKHEILVR 115 (500)
T ss_pred EEeCCceeEEEEEEEE
Confidence 8765444333333333
No 369
>PHA03271 envelope glycoprotein C; Provisional
Probab=70.96 E-value=22 Score=25.28 Aligned_cols=41 Identities=17% Similarity=0.330 Sum_probs=30.2
Q ss_pred CCceEEcCCCCceEEeeCCeEEEEEeecCC-CCC--ceEEEecCCCCC
Q psy7616 8 PPSIRTSPSNGQLTVRKGGTITLECKASGN-PVP--SIIWSKKDSSLP 52 (147)
Q Consensus 8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~--~v~w~~~~~~~~ 52 (147)
||.+.+.+. .+..|++..-.|.+... |+. .+.|+.++.+..
T Consensus 247 PPsVsV~a~----PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~nG~~V~ 290 (490)
T PHA03271 247 PASVDVLAP----PVLSGENYKASCIVRHFYPPGSVYVSWRQNGNIAT 290 (490)
T ss_pred CCCccccCC----ccccCCCceEEEEeeeecCCCceEEEEEeCCcccc
Confidence 555666665 56799999999997654 332 499999987764
No 370
>PF15096 G6B: G6B family
Probab=66.25 E-value=6.1 Score=24.45 Aligned_cols=16 Identities=13% Similarity=0.457 Sum_probs=12.6
Q ss_pred ecCCCCCeEEEEEeec
Q psy7616 117 KVDRHQAGVYQCTATN 132 (147)
Q Consensus 117 ~~~~~d~G~Y~C~a~n 132 (147)
-+...|+|.|.|..+.
T Consensus 80 LLs~GDSGTFfCkGr~ 95 (224)
T PF15096_consen 80 LLSAGDSGTFFCKGRQ 95 (224)
T ss_pred HhhcCCccceEecCcc
Confidence 4577899999998543
No 371
>PHA03269 envelope glycoprotein C; Provisional
Probab=64.41 E-value=18 Score=26.29 Aligned_cols=43 Identities=19% Similarity=0.319 Sum_probs=31.5
Q ss_pred eCCceEEcCCCCceEEeeCCeEEEEEeecCC-CCC--ceEEEecCCCCCC
Q psy7616 7 VPPSIRTSPSNGQLTVRKGGTITLECKASGN-PVP--SIIWSKKDSSLPS 53 (147)
Q Consensus 7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~--~v~w~~~~~~~~~ 53 (147)
-+|.+.+.+. .+..|++..-.|.+... |.. .+.|+.+++.+..
T Consensus 328 r~PsVsV~p~----PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~ng~~V~~ 373 (566)
T PHA03269 328 KRPNITVIGD----PVLLGNPYAAYCKVNKYYPPHSVIVKWTSNFGNIGK 373 (566)
T ss_pred cCCCccccCC----ccccCCCceEEEEeeeecCCCceEEEEEeCCcccCc
Confidence 4666666655 56799999999997654 332 4999999887753
No 372
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=63.81 E-value=2.3 Score=30.22 Aligned_cols=37 Identities=16% Similarity=0.186 Sum_probs=0.0
Q ss_pred CCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616 110 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 146 (147)
Q Consensus 110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V 146 (147)
.+.|.+.+++.+|+|.|+-...+.-|......+.|.|
T Consensus 88 ~~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v 124 (439)
T PF02480_consen 88 KGGLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTV 124 (439)
T ss_dssp -------------------------------------
T ss_pred CCceEEeccccccCeeEEEEecCCCCceEEEEEEEEE
Confidence 3568889999999999999998776665444455544
No 373
>PHA02982 hypothetical protein; Provisional
Probab=63.46 E-value=17 Score=23.28 Aligned_cols=26 Identities=23% Similarity=0.511 Sum_probs=22.4
Q ss_pred eccceEEEeecCCCCeEEEEEeecCC
Q psy7616 59 EGFSITLEKVDRHQAGVYQCTATNGV 84 (147)
Q Consensus 59 ~~~~l~~~~~~~~~~g~y~C~~~~~~ 84 (147)
..++|.++++.....|-|+|.+....
T Consensus 98 ~~STLTIkk~~i~N~GCYtc~~ks~~ 123 (251)
T PHA02982 98 NSSTFTMKKPDPQNLGCFTCEAKDAE 123 (251)
T ss_pred cceeEEeccCCcccCCceEEEEecCC
Confidence 56789999999999999999997744
No 374
>PHA03286 envelope glycoprotein E; Provisional
Probab=62.16 E-value=58 Score=23.58 Aligned_cols=37 Identities=24% Similarity=0.336 Sum_probs=25.4
Q ss_pred ccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEEE
Q psy7616 60 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96 (147)
Q Consensus 60 ~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v 96 (147)
.+.+.|.+++...+|.|.--..+..+......+-+.+
T Consensus 126 ~~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV 162 (492)
T PHA03286 126 GKELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWV 162 (492)
T ss_pred CCceEEeeccccccceEEEEEcCCCCcEEEEEEEEEE
Confidence 3568889999999999987766665443334444555
No 375
>PHA03240 envelope glycoprotein M; Provisional
Probab=59.65 E-value=34 Score=21.90 Aligned_cols=61 Identities=16% Similarity=0.260 Sum_probs=36.6
Q ss_pred eEEeeCCeEEEEEeecCCCCCceEEEe-------cCCC----C----C-C------------Cc---eeeeccceEEEee
Q psy7616 20 LTVRKGGTITLECKASGNPVPSIIWSK-------KDSS----L----P-S------------GE---KSLEGFSITLEKV 68 (147)
Q Consensus 20 ~~~~~g~~~~l~C~~~~~~~~~v~w~~-------~~~~----~----~-~------------~~---~~~~~~~l~~~~~ 68 (147)
+....|++++|.-.---.+.-.+.|++ +.+. + + . +. ..-.+++|.|-++
T Consensus 33 vt~r~G~nVTLga~~~lhpgq~v~Wy~~~c~~~~G~G~~~~plC~Ytppk~~r~ktl~~t~~nt~i~y~C~NstL~i~~v 112 (258)
T PHA03240 33 HTTREGDPLLLGGGHGLGAGQKAHWYKHKCDGITGNGDKLHPICTYDPPKNGKGKTLDESAENSFILYECHNSTLIIAHL 112 (258)
T ss_pred cccccCCceeeCCcccCCCCCEEEEEeeecccccCCCCCCceeEEecCCccccccccccccCCCceEEEeccceEEEEEE
Confidence 366788888886432112445688998 2221 0 0 0 00 0124667889999
Q ss_pred cCCCCeEEEEEe
Q psy7616 69 DRHQAGVYQCTA 80 (147)
Q Consensus 69 ~~~~~g~y~C~~ 80 (147)
..+|.|+|.-..
T Consensus 113 n~sd~~nYcr~k 124 (258)
T PHA03240 113 NLSDAGEYCRKK 124 (258)
T ss_pred eecCcchhhhcc
Confidence 999999985433
No 376
>PHA03283 envelope glycoprotein E; Provisional
Probab=59.62 E-value=29 Score=25.45 Aligned_cols=37 Identities=16% Similarity=0.166 Sum_probs=28.2
Q ss_pred cCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616 109 EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 146 (147)
Q Consensus 109 ~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V 146 (147)
....|.+.++..+++|.|+-..++..+.. ...+.|.|
T Consensus 132 ~~~~l~I~~at~~~aGVYtly~r~d~~~~-~~vflvtV 168 (542)
T PHA03283 132 ERSVLQIQRATPNIAGVYTLHVSSDGMMK-HSVFFVTV 168 (542)
T ss_pred CCCeeEEEecccccCeEEEEEecCCCceE-EEEEEEEe
Confidence 35668889999999999999999876633 44555554
No 377
>PHA03273 envelope glycoprotein C; Provisional
Probab=59.00 E-value=23 Score=25.46 Aligned_cols=42 Identities=19% Similarity=0.314 Sum_probs=31.5
Q ss_pred eCCceEEcCCCCceEEeeCCeEEEEEeecCC-CC--CceEEEecCCCCC
Q psy7616 7 VPPSIRTSPSNGQLTVRKGGTITLECKASGN-PV--PSIIWSKKDSSLP 52 (147)
Q Consensus 7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~--~~v~w~~~~~~~~ 52 (147)
-+|.+.+.+. .+..|++..-.|.+... |. ..+.|+.++.+..
T Consensus 236 r~Psvsv~~~----PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg~~V~ 280 (486)
T PHA03273 236 NAPLVDLSVH----PSLKGENYRAVCVVASYFPHSSVKLRWYKNAKEVD 280 (486)
T ss_pred cCCcccccCC----ccccCCCceEEEEeeeecCCCceEEEEEeCCeecc
Confidence 3666666665 57799999999997654 33 2499999998875
No 378
>PHA03282 envelope glycoprotein E; Provisional
Probab=58.39 E-value=12 Score=26.85 Aligned_cols=22 Identities=18% Similarity=0.499 Sum_probs=19.7
Q ss_pred CCceEEeecCCCCCeEEEEEee
Q psy7616 110 GFSITLEKVDRHQAGVYQCTAT 131 (147)
Q Consensus 110 ~~~~~l~~~~~~d~G~Y~C~a~ 131 (147)
+-+|.|.|....++|.|.|.+.
T Consensus 332 ~VdL~F~nAp~saSGLYVfVl~ 353 (540)
T PHA03282 332 TVNLQLRDASEASGGLYVCVVY 353 (540)
T ss_pred ccceEecCCCcccCceEEEEEE
Confidence 5588999999999999999984
No 379
>PHA03292 envelope glycoprotein I; Provisional
Probab=57.38 E-value=32 Score=24.12 Aligned_cols=37 Identities=8% Similarity=0.051 Sum_probs=26.2
Q ss_pred ccCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEE
Q psy7616 108 LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLE 145 (147)
Q Consensus 108 ~~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~ 145 (147)
..+.-+.+.+.+.+|+|.|.-.++-..... ..-|.|.
T Consensus 125 e~~vLL~I~~P~~~DSGiY~LRV~Ldga~~-aDvF~ls 161 (413)
T PHA03292 125 ETNVLLNITGPQPADSGAYILRVKLDHAPT-ADVFGLS 161 (413)
T ss_pred CcceEEEeCCCCcccceeEEEEEEeCCCcc-CceeEEE
Confidence 334567778999999999999998765444 4444443
No 380
>PHA03289 envelope glycoprotein I; Provisional
Probab=54.41 E-value=41 Score=23.05 Aligned_cols=38 Identities=13% Similarity=0.163 Sum_probs=26.6
Q ss_pred ccCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616 108 LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 146 (147)
Q Consensus 108 ~~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V 146 (147)
..|--+.+.+.+.+|+|.|.-.++-..... +.-|.+.|
T Consensus 119 e~gvLL~I~~Pr~~DSGiYyLRV~Ldga~~-sDvF~lsv 156 (352)
T PHA03289 119 EKGLLLTIIEPRMSDTGIYYIRVSLAGRNK-SDIFRTSV 156 (352)
T ss_pred CCceEEEeCCCCcccCeeEEEEEEeCCCcc-CceEEEEE
Confidence 335567778999999999999997764433 44454443
No 381
>PHA03286 envelope glycoprotein E; Provisional
Probab=52.92 E-value=43 Score=24.15 Aligned_cols=39 Identities=23% Similarity=0.285 Sum_probs=29.3
Q ss_pred ccCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616 108 LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 146 (147)
Q Consensus 108 ~~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V 146 (147)
..+..|.+.+.+.+++|.|+-..+|.-|-.....+.|.|
T Consensus 124 ~~~~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV 162 (492)
T PHA03286 124 GRGKELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWV 162 (492)
T ss_pred CCCCceEEeeccccccceEEEEEcCCCCcEEEEEEEEEE
Confidence 455678899999999999999999887665333444444
No 382
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=49.44 E-value=19 Score=25.88 Aligned_cols=33 Identities=9% Similarity=0.033 Sum_probs=19.7
Q ss_pred eeeecCCCCccccCCceEEeecCCCCCeEEEEEee
Q psy7616 97 LCKILPSGEKSLEGFSITLEKVDRHQAGVYQCTAT 131 (147)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~l~~~~~~d~G~Y~C~a~ 131 (147)
...+.+.|. ..+-+|.|.++...++|.|.|.+.
T Consensus 257 ~~~~~~~~~--~~~~~l~f~~a~~~~sGLYv~V~~ 289 (439)
T PF02480_consen 257 EPVPGLRWA--SNGVDLQFTNAPESASGLYVFVVY 289 (439)
T ss_dssp ---TTEEE---TTSSSEEESS--GGG-EEEEEEEE
T ss_pred CcCcccccc--CCCcceEecCCCcccCceEEEEEE
Confidence 334444443 336678999999999999999984
No 383
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=48.80 E-value=41 Score=17.80 Aligned_cols=54 Identities=19% Similarity=0.278 Sum_probs=31.3
Q ss_pred eEEEEEeecCCCCCceEEEecCCCCCCCceeeeccceEEEeecCCCCeEEEEEeecCCCCc
Q psy7616 27 TITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDP 87 (147)
Q Consensus 27 ~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~ 87 (147)
...+.+.+.+. ...+.|+.++..+.... ....+. ......|.|+-.+....|..
T Consensus 31 ~~~l~l~a~~~-~~~~~W~vdg~~~g~~~---~~~~~~---~~~~~~G~h~l~vvD~~G~~ 84 (89)
T PF06832_consen 31 RQPLVLKAAGG-RGPVYWFVDGEPLGTTQ---PGHQLF---WQPDRPGEHTLTVVDAQGRS 84 (89)
T ss_pred cceEEEEEeCC-CCcEEEEECCEEcccCC---CCCeEE---eCCCCCeeEEEEEEcCCCCE
Confidence 44455555554 44899999998773211 111222 22345689988887766653
No 384
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=48.71 E-value=46 Score=18.38 Aligned_cols=56 Identities=14% Similarity=0.209 Sum_probs=29.8
Q ss_pred EEEEEe-ecCCCCCceEEEecCC-CCCCCceeee------ccceEEEeecCCCCeEEEEEeecC
Q psy7616 28 ITLECK-ASGNPVPSIIWSKKDS-SLPSGEKSLE------GFSITLEKVDRHQAGVYQCTATNG 83 (147)
Q Consensus 28 ~~l~C~-~~~~~~~~v~w~~~~~-~~~~~~~~~~------~~~l~~~~~~~~~~g~y~C~~~~~ 83 (147)
+.-.|. +.|.|+..|.|..+-. .......... .+.+.+-.....+....+|.+.+.
T Consensus 23 ~VA~CiSa~GrPpa~ItW~t~l~G~~etq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~ 86 (98)
T cd05890 23 LVATCVSANGKPPSVVRWDTRLKGEAEFQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYR 86 (98)
T ss_pred EEEEEEcCCCcCCcEeEEEccCCCceeeeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEec
Confidence 455798 6788889999996431 1100000000 112223333345556688988775
No 385
>PHA02935 Hypothetical protein; Provisional
Probab=48.66 E-value=9.5 Score=24.02 Aligned_cols=31 Identities=23% Similarity=0.295 Sum_probs=21.6
Q ss_pred eecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616 116 EKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 146 (147)
Q Consensus 116 ~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V 146 (147)
..++.+|+|.|.-..+-..|.....++.+.|
T Consensus 107 sslryedsgsykgvshlkdgvivtttmnisv 137 (349)
T PHA02935 107 SSLRYEDSGSYKGVSHLKDGVIVTTTMNISV 137 (349)
T ss_pred cceeeccCCcccCchhhcCceEEEEEEEEEE
Confidence 5567788888887777666666555666554
No 386
>PHA03189 UL14 tegument protein; Provisional
Probab=47.18 E-value=14 Score=24.91 Aligned_cols=18 Identities=33% Similarity=0.730 Sum_probs=15.1
Q ss_pred ecCCCCCeEEEEEeecCC
Q psy7616 117 KVDRHQAGVYQCTATNGV 134 (147)
Q Consensus 117 ~~~~~d~G~Y~C~a~n~~ 134 (147)
++..+-+|.|.|...|..
T Consensus 139 ~v~t~taG~Y~CvLrN~t 156 (348)
T PHA03189 139 RVSTSTAGMYECVLRNET 156 (348)
T ss_pred EEEecccceEEEEecccc
Confidence 566778999999999884
No 387
>PHA03290 envelope glycoprotein I; Provisional
Probab=46.47 E-value=72 Score=22.07 Aligned_cols=26 Identities=15% Similarity=0.185 Sum_probs=20.8
Q ss_pred cCCceEEeecCCCCCeEEEEEeecCC
Q psy7616 109 EGFSITLEKVDRHQAGVYQCTATNGV 134 (147)
Q Consensus 109 ~~~~~~l~~~~~~d~G~Y~C~a~n~~ 134 (147)
.+--+.+.+.+.+|+|.|.-.++-..
T Consensus 127 ~~vLL~I~~P~~~DSGiY~LRV~Ldg 152 (357)
T PHA03290 127 AEIIFKINKPGIEDAGIYLLLVQLDH 152 (357)
T ss_pred cceEEEeCCCCcccCeeEEEEEEeCC
Confidence 34456778999999999999987663
No 388
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=41.70 E-value=14 Score=16.12 Aligned_cols=10 Identities=30% Similarity=0.763 Sum_probs=7.1
Q ss_pred CCCCeEEEEE
Q psy7616 120 RHQAGVYQCT 129 (147)
Q Consensus 120 ~~d~G~Y~C~ 129 (147)
..+.|.|.|.
T Consensus 20 ~~~dG~~yC~ 29 (36)
T PF11781_consen 20 YSDDGFYYCD 29 (36)
T ss_pred EccCCEEEhh
Confidence 3567888883
No 389
>KOG3611|consensus
Probab=38.74 E-value=36 Score=26.36 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=19.7
Q ss_pred CceEEeecCCCCCeEEEEEeecCC
Q psy7616 111 FSITLEKVDRHQAGVYQCTATNGV 134 (147)
Q Consensus 111 ~~~~l~~~~~~d~G~Y~C~a~n~~ 134 (147)
+.+.+..++..|.|.|.|.+....
T Consensus 612 G~lll~~~q~~~~G~y~c~~~e~~ 635 (737)
T KOG3611|consen 612 GGLVLLSVQKLDGGTYPCYADESS 635 (737)
T ss_pred CceeEEEEeeccCcccccccccCc
Confidence 336778999999999999997663
No 390
>PF09085 Adhes-Ig_like: Adhesion molecule, immunoglobulin-like; InterPro: IPR015169 This domain is found in mucosal vascular addressin cell adhesion molecule 1 proteins (MAdCAM-1). These are cell adhesion molecules expressed on the endothelium in mucosa that guide the specific homing of lymphocytes into mucosal tissues. MAdCAM-1 belongs to a subclass of the immunoglobulin superfamily (IgSF), the members of which are ligands for integrins []. The crystal structure of this domain has been reported; it adopts an immunoglobulin-like beta-sandwich structure, with seven strands arranged in two beta-sheets in a Greek-key topology [, ].; GO: 0007155 cell adhesion, 0016020 membrane; PDB: 1GSM_A 1BQS_A.
Probab=37.97 E-value=38 Score=18.68 Aligned_cols=41 Identities=24% Similarity=0.378 Sum_probs=24.3
Q ss_pred CCceEEcCCCCceEEeeCCeEEEEEeecCC----C-CCceEEEecCCCCC
Q psy7616 8 PPSIRTSPSNGQLTVRKGGTITLECKASGN----P-VPSIIWSKKDSSLP 52 (147)
Q Consensus 8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~----~-~~~v~w~~~~~~~~ 52 (147)
|..+.+.|. .+..|.+..+.|.+... | ..++.|..+++++.
T Consensus 3 PDqLtVSP~----~LVpg~dqevaCTAhnVtP~~p~~LSfslllGdqeLe 48 (110)
T PF09085_consen 3 PDQLTVSPE----ALVPGRDQEVACTAHNVTPADPDALSFSLLLGDQELE 48 (110)
T ss_dssp -SEEEEESS----SB-TT--SEEEEEEEEEB--STTTEEEEEEETTEE-T
T ss_pred CcceeEChh----HhccCCCceeeeeeccccCCCCCeEEeeeeeCceeec
Confidence 455666665 45578888889986422 2 34688999888774
No 391
>PHA03291 envelope glycoprotein I; Provisional
Probab=37.75 E-value=1.1e+02 Score=21.50 Aligned_cols=27 Identities=11% Similarity=0.003 Sum_probs=20.7
Q ss_pred CceEEeecCCCCCeEEEEEeecCCCCC
Q psy7616 111 FSITLEKVDRHQAGVYQCTATNGVGDP 137 (147)
Q Consensus 111 ~~~~l~~~~~~d~G~Y~C~a~n~~g~~ 137 (147)
--+.+.+...+|+|.|.-.++-.....
T Consensus 129 vLL~i~~P~~~DsGiYvLRV~vdgat~ 155 (401)
T PHA03291 129 PLLRARGAARAVVGLYVLRVWVEGATN 155 (401)
T ss_pred eEEEecCCCcccceeEEEEEEeCCCcc
Confidence 345668899999999999998664433
No 392
>PHA03281 envelope glycoprotein E; Provisional
Probab=36.25 E-value=47 Score=24.67 Aligned_cols=22 Identities=14% Similarity=0.306 Sum_probs=19.0
Q ss_pred CCceEEeecCCCCCeEEEEEee
Q psy7616 110 GFSITLEKVDRHQAGVYQCTAT 131 (147)
Q Consensus 110 ~~~~~l~~~~~~d~G~Y~C~a~ 131 (147)
+-.+.+.++...++|.|.|.+.
T Consensus 474 ~vdL~F~nApasaSGLYVfVl~ 495 (642)
T PHA03281 474 GSALKFVDAAESLSGLYVFIIH 495 (642)
T ss_pred CcceEeccCCcccCceEEEEEE
Confidence 4467889999999999999984
No 393
>PHA03290 envelope glycoprotein I; Provisional
Probab=33.21 E-value=1.7e+02 Score=20.45 Aligned_cols=36 Identities=14% Similarity=0.088 Sum_probs=24.0
Q ss_pred cceEEEeecCCCCeEEEEEeecCCCCceEEeEEEEEe
Q psy7616 61 FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97 (147)
Q Consensus 61 ~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~ 97 (147)
-.|.+.+....|+|.|.-++.-..... ...+.+.+.
T Consensus 129 vLL~I~~P~~~DSGiY~LRV~Ldga~~-sDvF~lsv~ 164 (357)
T PHA03290 129 IIFKINKPGIEDAGIYLLLVQLDHSRL-FDGFFLGLN 164 (357)
T ss_pred eEEEeCCCCcccCeeEEEEEEeCCCcc-cceEEEEEE
Confidence 357888999999999998886543221 344444443
No 394
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=30.22 E-value=50 Score=13.38 Aligned_cols=13 Identities=31% Similarity=0.509 Sum_probs=6.8
Q ss_pred CeEEEEEeecCCC
Q psy7616 123 AGVYQCTATNGVG 135 (147)
Q Consensus 123 ~G~Y~C~a~n~~g 135 (147)
.|.-.|+..|..|
T Consensus 17 ~g~v~~wG~n~~G 29 (30)
T PF13540_consen 17 DGEVYCWGDNNYG 29 (30)
T ss_dssp TTEEEEEE--TTS
T ss_pred CCCEEEEcCCcCC
Confidence 4666666666655
No 395
>PF05955 Herpes_gp2: Equine herpesvirus glycoprotein gp2; InterPro: IPR010278 This entry consists of a number of glycoprotein Gp2 sequences mainly found from equine herpesviruses [].; GO: 0016032 viral reproduction, 0016021 integral to membrane
Probab=29.38 E-value=1.5e+02 Score=18.60 Aligned_cols=51 Identities=18% Similarity=0.348 Sum_probs=28.8
Q ss_pred EeecCC-CCCceEEEecCCCCCCCcee------------eeccceEEEeecCCCCeEEEEEeec
Q psy7616 32 CKASGN-PVPSIIWSKKDSSLPSGEKS------------LEGFSITLEKVDRHQAGVYQCTATN 82 (147)
Q Consensus 32 C~~~~~-~~~~v~w~~~~~~~~~~~~~------------~~~~~l~~~~~~~~~~g~y~C~~~~ 82 (147)
|..... ..|.+.|..+...+..+... .-.+...++.....++..|.|.+.-
T Consensus 114 CitseL~s~PtitWsVgs~rl~n~gftqtwy~iqPGvCgilrS~v~~~R~~G~~~~~y~c~~~~ 177 (226)
T PF05955_consen 114 CITSELVSQPTITWSVGSDRLRNDGFTQTWYGIQPGVCGILRSEVRIPRAEGRDNVDYLCEIRA 177 (226)
T ss_pred EeeccccCCCeEEEEeccceeecCCccceeecccCcceeeEeeeeecccCCCCCcccEEecccc
Confidence 544332 46789999877666432211 1122345555566677778887654
No 396
>KOG0613|consensus
Probab=28.50 E-value=2.2e+02 Score=23.91 Aligned_cols=23 Identities=13% Similarity=0.060 Sum_probs=19.0
Q ss_pred eecCCCCCeEEEEEeecCCCCCc
Q psy7616 116 EKVDRHQAGVYQCTATNGVGDPV 138 (147)
Q Consensus 116 ~~~~~~d~G~Y~C~a~n~~g~~~ 138 (147)
..+..++.+.|.|.|.|..|...
T Consensus 398 ~~~~~~e~~~~~~~a~n~~g~~~ 420 (1205)
T KOG0613|consen 398 KDAGPGEGYFTRVPAVNKGGTEQ 420 (1205)
T ss_pred hhcCcccccccccceeccCCccc
Confidence 56788888999999999988653
No 397
>PF10420 IL12p40_C: Cytokine interleukin-12p40 C-terminus; InterPro: IPR019482 This entry represents the central domain (domain 2) of the beta subunit (also known as subunit p40) interleukin-12 (IL-12). This domain is largely beta-stranded with a fibronectin III-like structure. IL-12 is produced on stimulation by macrophage-engulfed micro-organisms and other stimuli, when it dimerises with IL-12 subunit alpha (subunit p35) to form a heterodimer which then binds to receptors on natural killer cells to activate them to destroy the micro-organisms []. This domain contains two disulphide bridges, one of which serves to bind the beta subunit to the alpha subunit, and the other to hold the beta strands within the domain together. The cupped shape of the alpha subunit binding interface matches the elbow-like bend between domains 2 and 3 in the beta subunit []. Domain 3 also has a fibronectin iii-like structure. ; PDB: 1F42_A 3QWR_A 3D87_B 1F45_A 3HMX_A 3DUH_A.
Probab=28.43 E-value=1e+02 Score=16.42 Aligned_cols=13 Identities=15% Similarity=0.376 Sum_probs=8.8
Q ss_pred CCCeEEEEEeecC
Q psy7616 121 HQAGVYQCTATNG 133 (147)
Q Consensus 121 ~d~G~Y~C~a~n~ 133 (147)
.-+|.|+|.....
T Consensus 11 nYsG~F~CsW~~~ 23 (82)
T PF10420_consen 11 NYSGNFTCSWKWH 23 (82)
T ss_dssp SSSSEEEEEEEES
T ss_pred cCCccEEEEeccc
Confidence 3457788877655
No 398
>PHA03281 envelope glycoprotein E; Provisional
Probab=27.24 E-value=1.8e+02 Score=21.88 Aligned_cols=37 Identities=19% Similarity=0.362 Sum_probs=26.0
Q ss_pred CCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616 110 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 146 (147)
Q Consensus 110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V 146 (147)
.+.|.+.+.+.+++|.|+-..+...|......+.|.|
T Consensus 297 ~~vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtV 333 (642)
T PHA03281 297 PGVLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKL 333 (642)
T ss_pred CCeeEEEecccccceeEEEEecCCCCcceeEEEEEEe
Confidence 3467889999999999998888665544222444443
No 399
>TIGR03853 matur_matur probable metal-binding protein. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulfatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulfur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulfatase/maturase systems.
Probab=25.26 E-value=42 Score=17.65 Aligned_cols=13 Identities=23% Similarity=0.330 Sum_probs=9.8
Q ss_pred CCCeEEEEEeecC
Q psy7616 121 HQAGVYQCTATNG 133 (147)
Q Consensus 121 ~d~G~Y~C~a~n~ 133 (147)
+|+-.|||.+.+-
T Consensus 33 ~~arFhTCSa~~m 45 (77)
T TIGR03853 33 EDARFHTCSAEGM 45 (77)
T ss_pred CCceEeecccccC
Confidence 4667899988754
No 400
>PF10572 UPF0556: Uncharacterised protein family UPF0556; InterPro: IPR018887 This family of proteins has no known function.
Probab=24.65 E-value=75 Score=19.30 Aligned_cols=17 Identities=24% Similarity=0.478 Sum_probs=13.2
Q ss_pred CCCCeEEEEEeecCCCC
Q psy7616 120 RHQAGVYQCTATNGVGD 136 (147)
Q Consensus 120 ~~d~G~Y~C~a~n~~g~ 136 (147)
..|.+.|+|.+..+-|.
T Consensus 69 s~d~~~~sC~I~RPqgk 85 (158)
T PF10572_consen 69 SDDNGHYSCIIWRPQGK 85 (158)
T ss_pred cCCCCceEEEEECCCCC
Confidence 34778999999888663
No 401
>PF10430 Ig_Tie2_1: Tie-2 Ig-like domain 1; InterPro: IPR018941 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. Angiogenesis is a physiological process whereby new blood vessels are formed from existing ones. It is essential for tissue repair and regeneration during wound healing but also plays important roles in many pathological processes including tumor growth and metastasis [, ]. Angiogenesis is regulated in part by the receptor protein tyrosine kinase Tie2 and its ligands, the angiopoietins. The angiopoietin-binding site is harbord by the N-terminal two immunoglobulin-like (Ig-like) domains of Tie2 []. The angiopoietin-1 receptor contains the Tie-2 Ig-like domain. This protein is a tyrosine-kinase transmembrane receptor for angiopoietin 1. It probably regulates endothelial cell proliferation, differentiation and guides the proper patterning of endothelial cells during blood vessel formation. Tie2 contains not two but three immunoglobulin domains. They fold together with the three epidermal growth factor domains to form a compact, arrowhead-shaped structure [].; GO: 0004714 transmembrane receptor protein tyrosine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation, 0007169 transmembrane receptor protein tyrosine kinase signaling pathway, 0005887 integral to plasma membrane; PDB: 2GY7_B 2GY5_A.
Probab=23.99 E-value=68 Score=17.42 Aligned_cols=9 Identities=33% Similarity=0.888 Sum_probs=7.4
Q ss_pred CeEEEEEee
Q psy7616 123 AGVYQCTAT 131 (147)
Q Consensus 123 ~G~Y~C~a~ 131 (147)
-|-|.|..+
T Consensus 75 ~GayyCegk 83 (96)
T PF10430_consen 75 IGAYYCEGK 83 (96)
T ss_dssp -EEEEEEEE
T ss_pred cceEEEEEE
Confidence 499999987
No 402
>PF02494 HYR: HYR domain; InterPro: IPR003410 This domain is known as the HYR (Hyalin Repeat) domain, after the protein hyalin that is composed exclusively of this repeat. This domain probably corresponds to a new superfamily in the immunoglobulin fold. The function of this domain is uncertain it may be involved in cell adhesion. In the Sushi repeat-containing protein (SrpX), this domain is found between two sushi repeats.
Probab=22.78 E-value=1.1e+02 Score=15.76 Aligned_cols=21 Identities=33% Similarity=0.479 Sum_probs=12.3
Q ss_pred EEEEeecCCCCCcCeeeEEEE
Q psy7616 126 YQCTATNGVGDPVTVDMTLEV 146 (147)
Q Consensus 126 Y~C~a~n~~g~~~~~~~~l~V 146 (147)
-+|.|....|+...-.+.+.|
T Consensus 61 V~ytA~D~~GN~a~C~f~V~V 81 (81)
T PF02494_consen 61 VTYTATDAAGNSATCSFTVTV 81 (81)
T ss_pred EEEEEEECCCCEEEEEEEEEC
Confidence 456677777766455555543
No 403
>PF10678 DUF2492: Protein of unknown function (DUF2492); InterPro: IPR019620 This entry describes a family of small cytosolic proteins, about 80 amino acids in length, in which the eight invariant residues include three His residues and two Cys residues. Two pairs of these invariant residues occur in motifs HxH (where x is A or G) and CxH, both of which suggest metal-binding activity. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulphatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulphur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulphatase/maturase systems.
Probab=21.52 E-value=47 Score=17.51 Aligned_cols=13 Identities=23% Similarity=0.330 Sum_probs=9.4
Q ss_pred CCCeEEEEEeecC
Q psy7616 121 HQAGVYQCTATNG 133 (147)
Q Consensus 121 ~d~G~Y~C~a~n~ 133 (147)
+|+-.|||.+.+-
T Consensus 35 ~~arFhTCSae~m 47 (78)
T PF10678_consen 35 EDARFHTCSAEGM 47 (78)
T ss_pred CCceEEecCCCCC
Confidence 4667899988653
No 404
>COG5246 PRP11 Splicing factor 3a, subunit 2 [RNA processing and modification]
Probab=21.51 E-value=65 Score=20.11 Aligned_cols=17 Identities=18% Similarity=0.497 Sum_probs=13.7
Q ss_pred ecCCCCCeEEEEEeecC
Q psy7616 117 KVDRHQAGVYQCTATNG 133 (147)
Q Consensus 117 ~~~~~d~G~Y~C~a~n~ 133 (147)
.+...+.|.|.|...+.
T Consensus 45 yl~knh~Gk~vC~LC~T 61 (222)
T COG5246 45 YLSKNHTGKYVCLLCKT 61 (222)
T ss_pred chhhcCCCcEEeeeecc
Confidence 45677899999998765
No 405
>KOG0200|consensus
Probab=21.44 E-value=98 Score=23.41 Aligned_cols=22 Identities=23% Similarity=0.567 Sum_probs=17.9
Q ss_pred CceEEeecCCCCCeEEEEEeec
Q psy7616 111 FSITLEKVDRHQAGVYQCTATN 132 (147)
Q Consensus 111 ~~~~l~~~~~~d~G~Y~C~a~n 132 (147)
..+.+..+..+|.|.|+|.+.|
T Consensus 13 ~~~~~~~~~~~~~~~y~~~~~~ 34 (609)
T KOG0200|consen 13 WFLIIDSVVPGDKGFYTCLVSN 34 (609)
T ss_pred ceEEEEEEEecCCccEEEEEec
Confidence 3455677888999999999988
No 406
>PF13220 DUF4028: Protein of unknown function (DUF4028)
Probab=20.14 E-value=83 Score=15.11 Aligned_cols=17 Identities=29% Similarity=0.595 Sum_probs=12.7
Q ss_pred CCCeEEEEEeecCCCCC
Q psy7616 121 HQAGVYQCTATNGVGDP 137 (147)
Q Consensus 121 ~d~G~Y~C~a~n~~g~~ 137 (147)
..+..|.|.++|.-|..
T Consensus 8 dssnsflctvqnkng~~ 24 (65)
T PF13220_consen 8 DSSNSFLCTVQNKNGDQ 24 (65)
T ss_pred cCCCceEEEEecccHhH
Confidence 34467999999987754
Done!