RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7616
(147 letters)
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 104 bits (261), Expect = 3e-29
Identities = 43/190 (22%), Positives = 60/190 (31%), Gaps = 48/190 (25%)
Query: 2 EQLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK----S 57
E+L P I T + T C P P I W++ + +
Sbjct: 2 EKLP-KAPVITTPLET--VDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIR 58
Query: 58 LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCK----ILPSGEKSLEGFSI 113
G +T+ V+ G+Y CTA NGVG V L+V K P K +EG
Sbjct: 59 ENGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKA 118
Query: 114 TLE-------------------------------------KVDRHQAGVYQCTATNGVGD 136
L V + AG Y+C A N +G
Sbjct: 119 VLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGT 178
Query: 137 PVTVDMTLEV 146
+ + LEV
Sbjct: 179 AYSKLVKLEV 188
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular
adhesion, ligand-independent DIME mutational analysis,
transferase; HET: EPE; 1.96A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.4
Length = 182
Score = 97.2 bits (242), Expect = 1e-26
Identities = 30/182 (16%), Positives = 54/182 (29%), Gaps = 45/182 (24%)
Query: 8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK-------SLEG 60
+ +P LTV +G + L C G P I W K + + + ++
Sbjct: 2 GLKLMGAPVK--LTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWI 59
Query: 61 FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCK----ILPSGEKSLEGFSITLE 116
++L+ V+R AG Y C +G ++ + L V + P L
Sbjct: 60 GFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLS 119
Query: 117 --------------------------------KVDRHQAGVYQCTATNGVGDPVTVDMTL 144
Q+ ++ C A N G + T+
Sbjct: 120 CEAVGPPEPVTIVWWRGTTKIGGPAPSPSVLNVTGVTQSTMFSCEAHNLKGLASSRTATV 179
Query: 145 EV 146
+
Sbjct: 180 HL 181
Score = 76.8 bits (189), Expect = 1e-18
Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 7/91 (7%)
Query: 7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVP-SIIWSKKDSSLPSGEKSLEGFSITL 65
P P + L V L C+A G P P +I+W + + + S L
Sbjct: 97 GVPFFTVEPKD--LAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPS----PSVL 150
Query: 66 EKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
Q+ ++ C A N G + T+ +
Sbjct: 151 NVTGVTQSTMFSCEAHNLKGLASSRTATVHL 181
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 101 bits (252), Expect = 2e-26
Identities = 32/187 (17%), Positives = 54/187 (28%), Gaps = 50/187 (26%)
Query: 7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK-------SLE 59
P + + + + G + C NP+ + K + +
Sbjct: 211 GEPVPQYVSKD--MMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTS 268
Query: 60 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL---------------------- 97
G + + GVY C NGVG P + L V+
Sbjct: 269 GKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVT 328
Query: 98 --CKI----------------LPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVT 139
CK+ L G ++ + ++ V G Y C ATN GD
Sbjct: 329 IPCKVTGLPAPNVVWSHNAKPLSGGRATVTDSGLVIKGVKNGDKGYYGCRATNEHGD-KY 387
Query: 140 VDMTLEV 146
+ ++V
Sbjct: 388 FETLVQV 394
Score = 86.9 bits (215), Expect = 4e-21
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Query: 6 MVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITL 65
+ P P + V++G +T+ CK +G P P+++WS L G ++ + +
Sbjct: 306 VSAPKYEQKPEK-VIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTDSGLVI 364
Query: 66 EKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
+ V G Y C ATN GD + ++V
Sbjct: 365 KGVKNGDKGYYGCRATNEHGD-KYFETLVQV 394
Score = 76.1 bits (187), Expect = 2e-17
Identities = 32/198 (16%), Positives = 49/198 (24%), Gaps = 59/198 (29%)
Query: 7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVP-SIIWSKKDSSLPSGEKS----LEGF 61
P ++ P+ + R+ LEC GN W K S E + +
Sbjct: 5 KYPVLKDQPAE--VLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEG 62
Query: 62 SITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLC----KILPSGEKSLEGFSITLE- 116
S+ + G YQC A G + ++ + +EG L+
Sbjct: 63 SLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQLDC 122
Query: 117 -----------------------------------------------KVDRHQAGVYQCT 129
K D Y CT
Sbjct: 123 VLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCT 182
Query: 130 ATNGVGDPVTVDMTLEVL 147
A N D V + E+
Sbjct: 183 AKNAAVDEEVVLVEYEIK 200
Score = 69.6 bits (170), Expect = 6e-15
Identities = 32/210 (15%), Positives = 48/210 (22%), Gaps = 71/210 (33%)
Query: 7 VPPSIRTSPSNGQLTVRKGGTITLECK-ASGNPVPSIIWSKKDSSLPSGEKSLEG---FS 62
+ T +G L+C + P P I W K+ S + +
Sbjct: 99 YLIASPAKTHE--KTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRIT 156
Query: 63 IT---------LEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLC--------------K 99
+ K D Y CTA N D V + E+ +
Sbjct: 157 AGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQ 216
Query: 100 ILPSGEKSLEGFSITLE------------------------------------------K 117
+ + G +
Sbjct: 217 YVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKT 276
Query: 118 VDRHQAGVYQCTATNGVGDPVTVDMTLEVL 147
GVY C NGVG P + L V+
Sbjct: 277 TLPEDEGVYTCEVDNGVGKPQKHSLKLTVV 306
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 100 bits (250), Expect = 4e-26
Identities = 44/183 (24%), Positives = 59/183 (32%), Gaps = 45/183 (24%)
Query: 5 QMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSIT 64
Q P P++ G +TLEC A GNPVP I W K D S S S E +
Sbjct: 204 QYAPSIKAKFPAD--TYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEP-LLH 260
Query: 65 LEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL-----------------------CK-- 99
++ VD G Y+C A N G T + + C
Sbjct: 261 IQNVDFEDEGTYECEAENIKGR-DTYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCVAS 319
Query: 100 ---------------ILPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTL 144
+ + G + K+ +G+YQC A N G V L
Sbjct: 320 GKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAENKHGT-VYASAEL 378
Query: 145 EVL 147
V
Sbjct: 379 TVQ 381
Score = 69.5 bits (170), Expect = 6e-15
Identities = 30/141 (21%), Positives = 47/141 (33%), Gaps = 21/141 (14%)
Query: 8 PPSIRTSPSNGQLTVRKGG---TITLECKASGNPVPSIIWSKKDSSLPSGEKS----LEG 60
P P++ +G +TL C+A NP + W + L G S + G
Sbjct: 4 GPVFEEQPAH--TLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAG 61
Query: 61 FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCKILPSGEKSLEGFSITLEK--- 117
+ V AG YQC ATN G V+ + +L L+ FS
Sbjct: 62 DLVISNPVKAKDAGSYQCVATNARGTVVSREASLRF---------GFLQEFSAEERDPVK 112
Query: 118 VDRHQAGVYQCTATNGVGDPV 138
+ ++ C+
Sbjct: 113 ITEGWGVMFTCSPPPHYPALS 133
Score = 64.1 bits (156), Expect = 4e-13
Identities = 28/200 (14%), Positives = 50/200 (25%), Gaps = 58/200 (29%)
Query: 3 QLQMVPPSIRTSPSNGQLTVRKGGTITLECKA-SGNPVPSIIWSKKDSSLPSGE-----K 56
+ + + + +G + C P S W +
Sbjct: 96 RFGFLQEFSAEERDP--VKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFV 153
Query: 57 SLEGFSITLEKVDRHQAGVYQCTATNGVGD------------PVTVDMTLEVLCKIL--- 101
S ++ + K + G Y C AT+ + + + + I
Sbjct: 154 SQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKF 213
Query: 102 PSGEKSLEGFSITLE----------------------------------KVDRHQAGVYQ 127
P+ +L G +TLE VD G Y+
Sbjct: 214 PADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYE 273
Query: 128 CTATNGVGDPVTVDMTLEVL 147
C A N G T + +
Sbjct: 274 CEAENIKGR-DTYQGRIIIH 292
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 98.4 bits (245), Expect = 2e-25
Identities = 41/185 (22%), Positives = 61/185 (32%), Gaps = 46/185 (24%)
Query: 5 QMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSIT 64
+ P P + KG T+ LEC A GNPVP+I+W + D + + +
Sbjct: 202 EYEPKIEVQFPET--VPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGI 259
Query: 65 L--EKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL-----------------------CK 99
L + AG Y+C A N G L CK
Sbjct: 260 LEIPNFQQEDAGSYECVAENSRGK-NVAKGQLTFYAQPNWVQIINDIHVAMEESVFWECK 318
Query: 100 -----------------ILPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDM 142
+L +E ++ + V+ AG+YQC A N G +
Sbjct: 319 ANGRPKPTYRWLKNGDPLLTRDRIQIEQGTLNITIVNLSDAGMYQCVAENKHGV-IFSSA 377
Query: 143 TLEVL 147
L V+
Sbjct: 378 ELSVI 382
Score = 82.2 bits (203), Expect = 1e-19
Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Query: 6 MVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK-SLEGFSIT 64
P+ ++ + V ++ ECKA+G P P+ W K L + ++ +E ++
Sbjct: 293 YAQPNWVQIIND--IHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQGTLN 350
Query: 65 LEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCK 99
+ V+ AG+YQC A N G + L V+ +
Sbjct: 351 ITIVNLSDAGMYQCVAENKHGV-IFSSAELSVIAE 384
Score = 73.7 bits (181), Expect = 2e-16
Identities = 35/139 (25%), Positives = 50/139 (35%), Gaps = 17/139 (12%)
Query: 8 PPSIRTSPSN-GQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK---SLEGFSI 63
P PS+ + + L C+ GNP P I W + + G S+ S+
Sbjct: 5 GPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSL 64
Query: 64 TLEKVDRHQ-AGVYQCTATNGVGDPVTVDMTLEVLCKILPSGEKSLEGFSITLEK---VD 119
+ ++ Q AG YQC ATN G V+ + L+ LE F V
Sbjct: 65 LINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFA---------YLENFKTRTRSTVSVR 115
Query: 120 RHQAGVYQCTATNGVGDPV 138
R Q V C G+
Sbjct: 116 RGQGMVLLCGPPPHSGELS 134
Score = 63.3 bits (154), Expect = 7e-13
Identities = 29/196 (14%), Positives = 55/196 (28%), Gaps = 57/196 (29%)
Query: 7 VPPSIRTSPSNGQLTVRKGGTITLECKA-SGNPVPSIIWSKKDSSLPSGEK---SLEGFS 62
+ +T + ++VR+G + L C + S W + + S E +
Sbjct: 100 YLENFKTRTRS-TVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGN 158
Query: 63 ITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCKILPSGEKS--------------L 108
+ + KV++ G Y C TN V + + ++ + +
Sbjct: 159 LYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAE 218
Query: 109 EGFSITLE-------------------------------------KVDRHQAGVYQCTAT 131
+G ++ LE + AG Y+C A
Sbjct: 219 KGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAE 278
Query: 132 NGVGDPVTVDMTLEVL 147
N G L
Sbjct: 279 NSRGK-NVAKGQLTFY 293
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 93.0 bits (231), Expect = 1e-24
Identities = 32/179 (17%), Positives = 51/179 (28%), Gaps = 56/179 (31%)
Query: 7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLE 66
I +P + V G + L C+A+G+P W K + +P+G S +
Sbjct: 17 RGSKITVNPES--KAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNTS----ELIFN 70
Query: 67 KVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCK-------------------ILPSGEKS 107
V AG Y C N + L+V + P+ +K
Sbjct: 71 AVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKL 130
Query: 108 LEGFSITLE-------------------------------KVDRHQAGVYQCTATNGVG 135
+ G ++ L+ VD G Y C N
Sbjct: 131 MPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLYMVPYVDLEHQGTYWCHVYNDRD 189
Score = 73.8 bits (181), Expect = 3e-17
Identities = 20/84 (23%), Positives = 31/84 (36%), Gaps = 6/84 (7%)
Query: 2 EQLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGF 61
+ + I P++ + G T+ L+C A G+P+P W K + L K
Sbjct: 112 DGVSESKLQICVEPTS--QKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKK---- 165
Query: 62 SITLEKVDRHQAGVYQCTATNGVG 85
+ VD G Y C N
Sbjct: 166 LYMVPYVDLEHQGTYWCHVYNDRD 189
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 91.8 bits (228), Expect = 2e-24
Identities = 38/192 (19%), Positives = 60/192 (31%), Gaps = 55/192 (28%)
Query: 8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK---SLEGFSIT 64
P+I + T +G +T C+ASG+P P+I W + + EK +T
Sbjct: 2 MPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELT 61
Query: 65 LEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCK---ILPSGEKSLEGFSITLE----- 116
+ + G Y C ATN G+ L+V + I E + E +TL
Sbjct: 62 VRNIINSDGGPYVCRATNKAGE-DEKQAFLQVFVQPHIIQLKNETTYENGQVTLVCDAEG 120
Query: 117 ------------------------------------------KVDRHQAGVYQCTATNGV 134
V +G Y C A + +
Sbjct: 121 EPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRI 180
Query: 135 GDPVTVDMTLEV 146
G M L++
Sbjct: 181 GG-HQKSMYLDI 191
Score = 69.5 bits (170), Expect = 1e-15
Identities = 28/102 (27%), Positives = 43/102 (42%), Gaps = 16/102 (15%)
Query: 7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLP--SGEKSLEG---- 60
V P I + T + G +TL C A G P+P I W + G+KSL+G
Sbjct: 94 VQPHIIQLKN---ETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEV 150
Query: 61 ------FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
S+ ++ V +G Y C A + +G M L++
Sbjct: 151 KGQHGSSSLHIKDVKLSDSGRYDCEAASRIGG-HQKSMYLDI 191
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 93.8 bits (233), Expect = 1e-23
Identities = 41/188 (21%), Positives = 64/188 (34%), Gaps = 47/188 (25%)
Query: 5 QMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSIT 64
+ P + + V +G + LEC ASG P P I W KK LPS + E F+
Sbjct: 217 ERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKA 276
Query: 65 L--EKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL-----------------------CK 99
L V +G Y C A+N +G + +++ V C+
Sbjct: 277 LRITNVSEEDSGEYFCLASNKMGS-IRHTISVRVKAAPYWLDEPKNLILAPGEDGRLVCR 335
Query: 100 I--------------------LPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVT 139
P+ + + G +I VYQC +N G +
Sbjct: 336 ANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNTSNEHGY-LL 394
Query: 140 VDMTLEVL 147
+ + VL
Sbjct: 395 ANAFVSVL 402
Score = 67.2 bits (164), Expect = 3e-14
Identities = 31/143 (21%), Positives = 46/143 (32%), Gaps = 18/143 (12%)
Query: 6 MVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK--------- 56
PP+I + V I +EC+A GNP PS W++ +
Sbjct: 14 TQPPTITKQSAK-DHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRS 72
Query: 57 -SLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCKILPSGEKSLEGFSITL 115
+L G YQC A N G ++ + L+V S ++
Sbjct: 73 GTLV-IDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQV------SKSPLWPKENLDP 125
Query: 116 EKVDRHQAGVYQCTATNGVGDPV 138
V QC G+ PV
Sbjct: 126 VVVQEGAPLTLQCNPPPGLPSPV 148
Score = 59.5 bits (144), Expect = 2e-11
Identities = 34/199 (17%), Positives = 52/199 (26%), Gaps = 60/199 (30%)
Query: 7 VPPSIRTSPSNGQLTVRKGGTITLECKA-SGNPVPSIIWSKKDSSLPSGEK---SLEGFS 62
P + V++G +TL+C G P P I W + +K
Sbjct: 114 KSPLWPKEN-LDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGD 172
Query: 63 ITLEKVDRH-QAGVYQCTATNGVGDP---------------------------------- 87
+ V Y C A
Sbjct: 173 LYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQ 232
Query: 88 -VTVDMTLEVLC----------------KILPSGEKSLEGFSITL--EKVDRHQAGVYQC 128
V M L + C LPS + E F+ L V +G Y C
Sbjct: 233 MVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFC 292
Query: 129 TATNGVGDPVTVDMTLEVL 147
A+N +G + +++ V
Sbjct: 293 LASNKMGS-IRHTISVRVK 310
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 91.3 bits (227), Expect = 2e-23
Identities = 36/191 (18%), Positives = 58/191 (30%), Gaps = 52/191 (27%)
Query: 6 MVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK-----SLEG 60
M PP P + + + G + T +C +G I W+K + + G
Sbjct: 3 MAPPFFDLKPVS--VDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENT 60
Query: 61 FSITLEKVDRHQAGVYQCTATNGVG-----------------------DPVTVDMTLEVL 97
++T+ KV + AG Y C A+N G V D
Sbjct: 61 ATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYE 120
Query: 98 CK-----------------ILPSGE----KSLEGFSITLEKVDRHQAGVYQCTATNGVGD 136
CK I S + + + + +G Y C A N G
Sbjct: 121 CKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGS 180
Query: 137 PVTVDMTLEVL 147
+ +L+V
Sbjct: 181 -ASSSTSLKVK 190
Score = 83.6 bits (207), Expect = 2e-20
Identities = 37/189 (19%), Positives = 62/189 (32%), Gaps = 52/189 (27%)
Query: 7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK-----SLEGF 61
PP + V++ ECK G+P ++W K ++ + K
Sbjct: 97 EPPRFIKKLEPSR-IVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVA 155
Query: 62 SITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL-----------------------C 98
+ + + +G Y C A N G + +L+V C
Sbjct: 156 VLEMYNLSVEDSGDYTCEAHNAAGS-ASSSTSLKVKEPPVFRKKPHPVETLKGADVHLEC 214
Query: 99 KI----------------LPSGEK---SLEGFSITLE--KVDRHQAGVYQCTATNGVGDP 137
++ L SG+K E F ++ VD G YQC A+N VG
Sbjct: 215 ELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGS- 273
Query: 138 VTVDMTLEV 146
T ++ +
Sbjct: 274 YTCVGSITL 282
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 88.8 bits (220), Expect = 3e-23
Identities = 30/190 (15%), Positives = 47/190 (24%), Gaps = 53/190 (27%)
Query: 7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVP--SIIWSKKDSSLPSGEKSLEGFSIT 64
P I TS + +TL+C + + W+K L + K+
Sbjct: 2 NEPRIVTSEEV--IIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASNMEYR 59
Query: 65 LEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCKIL--PSGEKSLEGFSITLE------ 116
+ K +G Y C + ++ I E EG +
Sbjct: 60 INKPRAEDSGEYHCVYHFVSAPKANATIEVKAAPDITGHKRSENKNEGQDAMMYCKSVGY 119
Query: 117 --------------------KVDRHQ--------------------AGVYQCTATNGVGD 136
R G Y+C ATN +G
Sbjct: 120 PHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGS 179
Query: 137 PVTVDMTLEV 146
+V L V
Sbjct: 180 -ASVSTVLRV 188
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 90.7 bits (225), Expect = 4e-23
Identities = 27/194 (13%), Positives = 52/194 (26%), Gaps = 56/194 (28%)
Query: 7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKS----LEGFS 62
+ +P+ ++G + C + P+IIW K + + L
Sbjct: 99 QKLMFKNAPTP--QEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNY 156
Query: 63 ITLEKVDRHQAGVYQCTATNGVGDPV-TVDMTLEVL------------------------ 97
+ + + + G Y+C + D+ + V
Sbjct: 157 LQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTL 216
Query: 98 -CK-----------------ILPSGEKSLEGFSI------TLEKVDRHQAGVYQCTATNG 133
C I E + T+ VD++ Y C A N
Sbjct: 217 VCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENK 276
Query: 134 VGDPVTVDMTLEVL 147
G+ + L+V
Sbjct: 277 AGE-QDASIHLKVF 289
Score = 82.6 bits (204), Expect = 5e-20
Identities = 22/192 (11%), Positives = 52/192 (27%), Gaps = 55/192 (28%)
Query: 9 PSIRTSPSNGQLTVRKGGTITLECKASGNP-VPSIIWSKKDSSLPSGEKS--------LE 59
+ PS + G + C+ +G+ I W + S + +
Sbjct: 3 LQVDIVPSQ--GEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDD 60
Query: 60 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL---------------------- 97
++T+ + AG+Y+C T G + +++
Sbjct: 61 SSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVI 120
Query: 98 -CK-----------------ILPSGE---KSLEGFSITLEKVDRHQAGVYQCTATNGVGD 136
C ++ + L + + + + G Y+C
Sbjct: 121 VCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARG 180
Query: 137 PV-TVDMTLEVL 147
+ D+ + V
Sbjct: 181 EINFKDIQVIVN 192
Score = 81.5 bits (201), Expect = 1e-19
Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 8/100 (8%)
Query: 7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLE 66
VPP+++ S T G ++TL C A G P P++ W+K + + E+ E + +
Sbjct: 193 VPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDD 252
Query: 67 -------KVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCK 99
VD++ Y C A N G+ + L+V K
Sbjct: 253 SSELTIRNVDKNDEAEYVCIAENKAGE-QDASIHLKVFAK 291
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 86.0 bits (213), Expect = 7e-23
Identities = 36/107 (33%), Positives = 47/107 (43%), Gaps = 14/107 (13%)
Query: 3 QLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSG-------- 54
+ + PP I PS+ L V KG TL CKA G P P+I W K + +
Sbjct: 4 RQEDFPPRIVEHPSD--LIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHR 61
Query: 55 ----EKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97
SL I + R GVY C A N +G+ V+ D +LEV
Sbjct: 62 MLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVA 108
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 88.7 bits (220), Expect = 7e-23
Identities = 45/197 (22%), Positives = 67/197 (34%), Gaps = 58/197 (29%)
Query: 7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKS----LEGFS 62
PP I P N VR GG + C A G+P PSI+W K + + +
Sbjct: 5 HPPEIIRKPQN--QGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGG 62
Query: 63 ITLEKVDRHQ----AGVYQCTATNGVGDPVTVDMTLEVL--------------------- 97
I++ +++ + Y+C A NGVGD V+ D TL +
Sbjct: 63 ISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVI 122
Query: 98 ---------CK-----------------ILPSGE-KSLEGFSITLEKVDRHQAGVYQCTA 130
CK + S SL+ + +E G Y+C A
Sbjct: 123 EVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIENSREEDQGKYECVA 182
Query: 131 TNGVGDPVTVDMTLEVL 147
N +G + L V
Sbjct: 183 ENSMGTEHSKATNLYVK 199
Score = 78.7 bits (194), Expect = 4e-19
Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 4/99 (4%)
Query: 1 MEQLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK--SL 58
++ P I P + G T+ + CKA GNP P+I W K + + SL
Sbjct: 103 GDKTPAGFPVITQGPGT--RVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSL 160
Query: 59 EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97
+ + +E G Y+C A N +G + L V
Sbjct: 161 KDGFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVK 199
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 88.5 bits (219), Expect = 8e-23
Identities = 36/207 (17%), Positives = 58/207 (28%), Gaps = 70/207 (33%)
Query: 9 PSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK------------ 56
S+ T+ S+ + V + +I L C SG P + W S +
Sbjct: 2 GSVYTAQSD--VQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADR 59
Query: 57 -SLEGFSITLEKVDRHQAGVYQCTATNGVG-DPVTVDMTLEVL----------------- 97
+ IT V R G Y C + G + V + L VL
Sbjct: 60 VTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIG 119
Query: 98 ------CK------------------ILPSGEKSLEGF------------SITLEKVDRH 121
C +L + K F + + V
Sbjct: 120 NRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAF 179
Query: 122 QAGVYQCTATNGVGDPV-TVDMTLEVL 147
+G Y C A NG G + + ++ +
Sbjct: 180 DSGEYYCQAQNGYGTAMRSEAAHMDAV 206
Score = 66.9 bits (163), Expect = 1e-14
Identities = 22/107 (20%), Positives = 37/107 (34%), Gaps = 17/107 (15%)
Query: 6 MVPPSIRTSPSNGQLTVRKGGTITLECKA-SGNPVPSIIWSKKDSSLPSGEK-------- 56
+VPPS T +V G L C G+P W K S+ + +
Sbjct: 102 LVPPSKPTISVP--SSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMN 159
Query: 57 -----SLEGFSITLEKVDRHQAGVYQCTATNGVGDPV-TVDMTLEVL 97
+ + + V +G Y C A NG G + + ++ +
Sbjct: 160 SSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAV 206
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 88.3 bits (219), Expect = 9e-23
Identities = 50/200 (25%), Positives = 72/200 (36%), Gaps = 57/200 (28%)
Query: 3 QLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK------ 56
+ + PP I PS+ L V KG TL CKA G P P+I W K + + +
Sbjct: 4 RQEDFPPRIVEHPSD--LIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHR 61
Query: 57 ------SLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL------------- 97
SL I + R GVY C A N +G+ V+ D +LEV
Sbjct: 62 MLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDV 121
Query: 98 -----------CK-----------------ILPSGEK--SLEGFSITLEKVDRHQAGVYQ 127
C+ L ++ ++ G + + + AG Y
Sbjct: 122 MVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGKLMITYTRKSDAGKYV 181
Query: 128 CTATNGVGDPVTVDMTLEVL 147
C TN VG+ + L VL
Sbjct: 182 CVGTNMVGERESEVAELTVL 201
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 88.1 bits (218), Expect = 9e-23
Identities = 34/205 (16%), Positives = 55/205 (26%), Gaps = 67/205 (32%)
Query: 8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK----------- 56
S+ S ++ + + + L C SG P + W
Sbjct: 2 MGSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYED 61
Query: 57 --SLEGFSITLEKVDRHQAGVYQCTATNGVGDPV-TVDMTLEVL---------------- 97
+ IT + V R G Y C + G+ V + L VL
Sbjct: 62 RVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATI 121
Query: 98 -------CK-----------------ILPSGEKSLEGF------------SITLEKVDRH 121
C ++P+ KS F + + +
Sbjct: 122 GNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSAS 181
Query: 122 QAGVYQCTATNGVGDPVTVDMTLEV 146
G Y C A NG G P+T + +
Sbjct: 182 DTGEYSCEARNGYGTPMT-SNAVRM 205
Score = 70.4 bits (172), Expect = 7e-16
Identities = 25/104 (24%), Positives = 36/104 (34%), Gaps = 16/104 (15%)
Query: 6 MVPPSIRTSPSNGQLTVRKGGTITLECKAS-GNPVPSIIWSKKDSSLPSGEKSLEGF--- 61
+VPPS T + G L C G+P W K +P+ KS F
Sbjct: 105 LVPPSKPTVNIP--SSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNS 162
Query: 62 ---------SITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
+ + + G Y C A NG G P+T + +
Sbjct: 163 SYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMT-SNAVRM 205
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 87.6 bits (217), Expect = 7e-22
Identities = 40/192 (20%), Positives = 58/192 (30%), Gaps = 51/192 (26%)
Query: 2 EQLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKS---- 57
+QL P+I P V + T T+ C ASGNP P I W K + +
Sbjct: 102 DQLPSGFPNIDMGPQL--KVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIK 159
Query: 58 -LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL------------------- 97
L ++ +E + G Y+C ATN G + L V
Sbjct: 160 QLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMP 219
Query: 98 -------CKI----------------LPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGV 134
C L + G LE D + Y C A + +
Sbjct: 220 GGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMPVG-RNVLELTDVKDSANYTCVAMSSL 278
Query: 135 GDPVTVDMTLEV 146
G + + V
Sbjct: 279 GV-IEAVAQITV 289
Score = 80.6 bits (199), Expect = 3e-19
Identities = 33/140 (23%), Positives = 56/140 (40%), Gaps = 17/140 (12%)
Query: 7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK------SLEG 60
PP P + GG + C+A+G+P P + W+KK + S G
Sbjct: 5 EPPRFIKEPKD--QIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAG 62
Query: 61 FSITLEKVDRHQ-AGVYQCTATNGVGDPVTVDMTLEVLCKILPSGEKSLEGFSITLE--K 117
+ ++ + + VY+C A N VG+ +TV L VL + + +
Sbjct: 63 AVLRIQPLRTPRDENVYECVAQNSVGE-ITVHAKLTVLRE--DQLPSGFPNIDMGPQLKV 119
Query: 118 VDRHQAGVYQCTATNGVGDP 137
V+R + C A+ G+P
Sbjct: 120 VERTRTATMLCAAS---GNP 136
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 89.1 bits (221), Expect = 8e-22
Identities = 36/190 (18%), Positives = 58/190 (30%), Gaps = 52/190 (27%)
Query: 7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK-----SLEGF 61
VPP P + + + G + T +C +G I W+K + + G
Sbjct: 196 VPPFFDLKPVS--VDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTA 253
Query: 62 SITLEKVDRHQAGVYQCTATNGVGD-----------------------PVTVDMTLEVLC 98
++T+ KV + AG Y C A+N G V D C
Sbjct: 254 TLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYEC 313
Query: 99 KI----------------LPSGEK-----SLEGFSITLEKVDRHQAGVYQCTATNGVGDP 137
KI + K + + + +G Y C A N G
Sbjct: 314 KIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGS- 372
Query: 138 VTVDMTLEVL 147
+ +L+V
Sbjct: 373 ASSSTSLKVK 382
Score = 86.8 bits (215), Expect = 6e-21
Identities = 44/192 (22%), Positives = 60/192 (31%), Gaps = 54/192 (28%)
Query: 6 MVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK---SLEGFS 62
PP R P + KG + LEC+ G P + W K L SG+K E F
Sbjct: 382 KEPPVFRKKPHP--VETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFL 439
Query: 63 ITLE--KVDRHQAGVYQCTATNGVGDPVTVDMTLEVL----------------------- 97
++ VD G YQC A+N VG T ++ +
Sbjct: 440 TSIHILNVDSADIGEYQCKASNDVGS-DTCVGSITLKAPPRFVKKLSDISTVVGEEVQLQ 498
Query: 98 CK-----------------ILPSGEK---SLEGFSITLE--KVDRHQAGVYQCTATNGVG 135
I+ + S TL+ + + AG Y C N G
Sbjct: 499 ATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAG 558
Query: 136 DPVTVDMTLEVL 147
TL VL
Sbjct: 559 T-QECFATLSVL 569
Score = 84.9 bits (210), Expect = 3e-20
Identities = 35/190 (18%), Positives = 58/190 (30%), Gaps = 50/190 (26%)
Query: 6 MVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK-----SLEG 60
PP + V++ ECK G+P ++W K ++ + K
Sbjct: 288 QEPPRFIKKLEPSR-IVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESV 346
Query: 61 FSITLEKVDRHQAGVYQCTATNGVGD----------------------PVTVDMTLEVLC 98
+ + + +G Y C A N G + + C
Sbjct: 347 AVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLEC 406
Query: 99 K----------------ILPSGEK---SLEGFSITLE--KVDRHQAGVYQCTATNGVGDP 137
+ L SG+K E F ++ VD G YQC A+N VG
Sbjct: 407 ELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGS- 465
Query: 138 VTVDMTLEVL 147
T ++ +
Sbjct: 466 DTCVGSITLK 475
Score = 77.5 bits (191), Expect = 9e-18
Identities = 38/190 (20%), Positives = 58/190 (30%), Gaps = 54/190 (28%)
Query: 8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK---SLEGFSIT 64
PP + + G ITL+CK G P I W K+ + L S + +
Sbjct: 5 PPYFIEPLEH--VEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVAS 62
Query: 65 LE--KVDRHQAGVYQCTATNGVGD-----------------------PVTVDM--TLEVL 97
L KVD G Y C A N VG V + +
Sbjct: 63 LVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFE 122
Query: 98 CKI----------------LPSGEK-----SLEGFSITLEKVDRHQAGVYQCTATNGVGD 136
C+I L ++ + + D+ G Y C+A+N +G
Sbjct: 123 CRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGT 182
Query: 137 PVTVDMTLEV 146
+ L +
Sbjct: 183 -ASSSAKLTL 191
Score = 76.8 bits (189), Expect = 2e-17
Identities = 32/193 (16%), Positives = 60/193 (31%), Gaps = 54/193 (27%)
Query: 5 QMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK-----SLE 59
+ +PPS + + G + EC+ +G+ + W K L
Sbjct: 98 RKLPPSFARKLKD--VHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHN 155
Query: 60 GFSITLEKVDRHQAGVYQCTATNGVGD-----PVTVDM--------------------TL 94
++ + + D+ G Y C+A+N +G +T+ +
Sbjct: 156 VATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESG 215
Query: 95 EVLCKI----------------LPSGEK-----SLEGFSITLEKVDRHQAGVYQCTATNG 133
C + + G ++T+ KV + AG Y C A+N
Sbjct: 216 TFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNV 275
Query: 134 VGDPVTVDMTLEV 146
G + L V
Sbjct: 276 AGK-DSCSAQLGV 287
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 88.4 bits (219), Expect = 1e-21
Identities = 38/185 (20%), Positives = 59/185 (31%), Gaps = 48/185 (25%)
Query: 6 MVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK---SLEGFS 62
PSN + +G LEC SG P PS W + + + K L G +
Sbjct: 219 HRQLYFLQRPSN--VIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSN 276
Query: 63 ITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL-----------------------CK 99
+ + V +G Y C T + ++ L VL C
Sbjct: 277 LLISNVTDDDSGTYTCVVTYKNEN-ISASAELTVLVPPWFLNHPSNLYAYESMDIEFECA 335
Query: 100 -----------------ILPSGE-KSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVD 141
++PS + + G ++ + V + G YQC A N G+
Sbjct: 336 VSGKPVPTVNWMKNGDVVIPSDYFQIVGGSNLRILGVVKSDEGFYQCVAENEAGN-AQSS 394
Query: 142 MTLEV 146
L V
Sbjct: 395 AQLIV 399
Score = 84.1 bits (208), Expect = 3e-20
Identities = 35/194 (18%), Positives = 61/194 (31%), Gaps = 56/194 (28%)
Query: 7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGE-----KSLEGF 61
P + + +T G T+ L+C+ G+P+P+I W K L L
Sbjct: 120 GPLRFLSQTES--ITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSG 177
Query: 62 SITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCK----------ILPSGEKSLEGF 111
++ + ++ +GVY+C+A N + + +L PS ++EG
Sbjct: 178 ALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGK 237
Query: 112 SITLE--------------------------------------KVDRHQAGVYQCTATNG 133
LE V +G Y C T
Sbjct: 238 DAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYK 297
Query: 134 VGDPVTVDMTLEVL 147
+ ++ L VL
Sbjct: 298 NEN-ISASAELTVL 310
Score = 78.7 bits (194), Expect = 3e-18
Identities = 36/196 (18%), Positives = 65/196 (33%), Gaps = 57/196 (29%)
Query: 7 VPPSIRTSPSNGQLTVRKGGTITLECKASGN-PVPSIIWSKKDSSLPSGE---------K 56
+ PS+ +GG + L C A + VP I W K L G
Sbjct: 20 RSLHFVSEPSD--AVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNG 77
Query: 57 SLEGFSITLEKVDRHQAGVYQCTATNGVG----------------------DPVTVDM-- 92
SL +I + + G+YQC A+ G + +T M
Sbjct: 78 SLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGD 137
Query: 93 TLEVLCKI-------------------LPSGEK--SLEGFSITLEKVDRHQAGVYQCTAT 131
T+ + C++ +P + L ++ + ++ +GVY+C+A
Sbjct: 138 TVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSAR 197
Query: 132 NGVGDPVTVDMTLEVL 147
N + + +L
Sbjct: 198 NPASTRTGNEAEVRIL 213
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 88.2 bits (218), Expect = 2e-21
Identities = 30/189 (15%), Positives = 50/189 (26%), Gaps = 50/189 (26%)
Query: 6 MVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLE-GFSIT 64
+ I + S+ + + + P W+ S P +K L+ G+SI+
Sbjct: 322 VEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSIS 381
Query: 65 LEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCK--ILPSGE----------------- 105
+HQ G Y A N T TL + K +L
Sbjct: 382 KFCNHKHQPGEYIFHAENDDAQ-FTKMFTLNIRRKPQVLAEASASQASCFSDGYPLPSWT 440
Query: 106 ----------------------------KSLEGFSITLEKVDRHQAGVYQCTATNGVGDP 137
S TL + + + +C A N +G
Sbjct: 441 WKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLG-T 499
Query: 138 VTVDMTLEV 146
+ L
Sbjct: 500 SCETILLNS 508
Score = 82.1 bits (202), Expect = 3e-19
Identities = 28/185 (15%), Positives = 50/185 (27%), Gaps = 42/185 (22%)
Query: 4 LQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK----SLE 59
+ P S T + V +ITL+ S +W K SSL +
Sbjct: 42 CALRPQSSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRG 101
Query: 60 GFSITLEKVDRHQAGVYQCTATNGVG---------------------DPVTVDMTLEVLC 98
S+ + K+ QAG Y + ++ ++C
Sbjct: 102 VVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKMENQDALVC 161
Query: 99 K-----------------ILPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVD 141
E+S + + +C A N +G T
Sbjct: 162 ISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRL 221
Query: 142 MTLEV 146
T+++
Sbjct: 222 FTIDL 226
Score = 66.6 bits (162), Expect = 6e-14
Identities = 22/183 (12%), Positives = 40/183 (21%), Gaps = 53/183 (28%)
Query: 8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSL-PSGEKSLEGFSITLE 66
+ L C + P P + W DS E+S +
Sbjct: 140 TLLYTLRRPY---FRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEK 196
Query: 67 KVDRHQAGVYQCTATNGVGDPVTVDMTLEVLC--KILPSGEKSLEGFSITLE-------- 116
+ +C A N +G T T+++ + G + +
Sbjct: 197 VLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNH 256
Query: 117 ---------------------------------------KVDRHQAGVYQCTATNGVGDP 137
V R+ G Y C+++
Sbjct: 257 GFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQS 316
Query: 138 VTV 140
V
Sbjct: 317 ALV 319
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 84.2 bits (208), Expect = 2e-21
Identities = 27/91 (29%), Positives = 38/91 (41%), Gaps = 4/91 (4%)
Query: 7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK-SLEGFSITL 65
P I + + G +TLEC A GNPVP I W K +PS + S G + +
Sbjct: 112 YPADIVVQFKD--VYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAVLKI 169
Query: 66 EKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
+ G+Y+C A N G + V
Sbjct: 170 FNIQLEDEGIYECEAENIRGK-DKHQARIYV 199
Score = 63.4 bits (154), Expect = 2e-13
Identities = 24/196 (12%), Positives = 49/196 (25%), Gaps = 59/196 (30%)
Query: 7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVP--SIIWSKKDSSLPSGE-----KSLE 59
+ P + V++G + L C + S W + + S
Sbjct: 7 LDPFPPEERPE--VRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQT 64
Query: 60 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCK-------------ILPSGEK 106
++ + V+ G Y C ++ + ++ +
Sbjct: 65 NGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVY 124
Query: 107 SLEGFSITLE------------------------------------KVDRHQAGVYQCTA 130
+L G ++TLE + G+Y+C A
Sbjct: 125 ALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAVLKIFNIQLEDEGIYECEA 184
Query: 131 TNGVGDPVTVDMTLEV 146
N G + V
Sbjct: 185 ENIRGK-DKHQARIYV 199
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 84.5 bits (209), Expect = 3e-21
Identities = 36/201 (17%), Positives = 65/201 (32%), Gaps = 64/201 (31%)
Query: 7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSL------EG 60
PP +P + T GG + C+A+G+P P I+W+KK + + + G
Sbjct: 5 TPPRFTRTPVD--QTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSG 62
Query: 61 FSITLEKVDRHQ-AGVYQCTATNGVGDPVTVDMTLEVLCKILPSGEKS-----------L 108
+ ++ + + +Y+C A+N VG+ ++V L VL +
Sbjct: 63 SVLRIQPLRTPRDEAIYECVASNNVGE-ISVSTRLTVLREDQIPRGFPTIDMGPQLKVVE 121
Query: 109 EGFSITLE-------------------------------------------KVDRHQAGV 125
+ T+ + + G
Sbjct: 122 RTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGK 181
Query: 126 YQCTATNGVGDPVTVDMTLEV 146
Y+C ATN G + L V
Sbjct: 182 YECVATNSAGTRYSAPANLYV 202
Score = 78.7 bits (194), Expect = 4e-19
Identities = 28/103 (27%), Positives = 42/103 (40%), Gaps = 10/103 (9%)
Query: 2 EQLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK----- 56
+Q+ P+I P V + T T+ C ASGNP P I W K + +
Sbjct: 102 DQIPRGFPTIDMGPQL--KVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIK 159
Query: 57 ---SLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
S ++ +E+ + G Y+C ATN G + L V
Sbjct: 160 QLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYV 202
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 87.3 bits (216), Expect = 4e-21
Identities = 36/184 (19%), Positives = 55/184 (29%), Gaps = 52/184 (28%)
Query: 8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEK 67
P SPS R G ++L C A+ NP W + + + +
Sbjct: 381 PDDPTISPSY--TYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHTQ------ELFISN 432
Query: 68 VDRHQAGVYQCTATNGVGD--------------------------PVTVDMTLEVLCKI- 100
+ +G+Y C A N PV + C+
Sbjct: 433 ITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPE 492
Query: 101 --------------LPSGEK---SLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMT 143
LP + S ++TL V R+ A Y C N V + +T
Sbjct: 493 AQNTTYLWWVNGQSLPVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVT 552
Query: 144 LEVL 147
L+VL
Sbjct: 553 LDVL 556
Score = 85.0 bits (210), Expect = 3e-20
Identities = 31/183 (16%), Positives = 54/183 (29%), Gaps = 40/183 (21%)
Query: 3 QLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK---SLE 59
++ P S +N + V + C+ + +W + SLP + S
Sbjct: 105 RVYPELPKPSISSNNSK-PVEDKDAVAFTCEPETQD-ATYLWWVNNQSLPVSPRLQLSNG 162
Query: 60 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL---------------------- 97
++TL V R+ Y+C N V + + L VL
Sbjct: 163 NRTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLN 222
Query: 98 --CKILPS----------GEKSLEGFSITLEKVDRHQAGVYQCTATNGVG-DPVTVDMTL 144
C + G + + + + +G Y C A N T T+
Sbjct: 223 LSCHAASNPPAQYSWFVNGTFQQSTQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTI 282
Query: 145 EVL 147
V
Sbjct: 283 TVY 285
Score = 83.1 bits (205), Expect = 1e-19
Identities = 33/176 (18%), Positives = 53/176 (30%), Gaps = 40/176 (22%)
Query: 8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK---SLEGFSIT 64
P S +N + V + C+ + +W SLP + S ++T
Sbjct: 466 LPKPSISSNNSK-PVEDKDAVAFTCEPEAQN-TTYLWWVNGQSLPVSPRLQLSNGNRTLT 523
Query: 65 LEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCK-----ILPSGEKSLEGFSITLE--- 116
L V R+ A Y C N V + +TL+VL I P L G ++ L
Sbjct: 524 LFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYLSGANLNLSCHS 583
Query: 117 --------------------------KVDRHQAGVYQCTATNGVGDPVTVDMTLEV 146
K+ + G Y C +N + +
Sbjct: 584 ASNPSPQYSWRINGIPQQHTQVLFIAKITPNNNGTYACFVSNLATG-RNNSIVKSI 638
Score = 79.2 bits (195), Expect = 3e-18
Identities = 35/184 (19%), Positives = 57/184 (30%), Gaps = 52/184 (28%)
Query: 8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEK 67
P + SP N + R G + L C A+ NP W + S + + +
Sbjct: 203 PDAPTISPLN--TSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQSTQ------ELFIPN 254
Query: 68 VDRHQAGVYQCTATNGVG-DPVTVDMTLEVLCKI-------------------------- 100
+ + +G Y C A N T T+ V +
Sbjct: 255 ITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCEPE 314
Query: 101 --------------LPSGEK---SLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMT 143
LP + S + ++TL V R+ G Y+C N + + +
Sbjct: 315 IQNTTYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVI 374
Query: 144 LEVL 147
L VL
Sbjct: 375 LNVL 378
Score = 65.4 bits (159), Expect = 2e-13
Identities = 29/202 (14%), Positives = 52/202 (25%), Gaps = 68/202 (33%)
Query: 10 SIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSG--------------- 54
+I ++P N V +G + L + W K + +
Sbjct: 3 TIESTPFN----VAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPG 58
Query: 55 ------EKSLEGFSITLEKVDRHQAGVYQCTATNGVG----------------------- 85
E S+ ++ + ++ G Y
Sbjct: 59 PAYSGREIIYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSN 118
Query: 86 --DPVTVDMTLEVLCKI---------------LPSGEK---SLEGFSITLEKVDRHQAGV 125
PV + C+ LP + S ++TL V R+
Sbjct: 119 NSKPVEDKDAVAFTCEPETQDATYLWWVNNQSLPVSPRLQLSNGNRTLTLFNVTRNDTAS 178
Query: 126 YQCTATNGVGDPVTVDMTLEVL 147
Y+C N V + + L VL
Sbjct: 179 YKCETQNPVSARRSDSVILNVL 200
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein
1 (isoform 2); hydrolase, immunoglobulin domain,
nucleus, protease; 1.15A {Homo sapiens}
Length = 91
Score = 80.8 bits (200), Expect = 4e-21
Identities = 20/78 (25%), Positives = 29/78 (37%), Gaps = 6/78 (7%)
Query: 8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEK 67
I P++ + G T+ L+C A G+P+P W K + L K +
Sbjct: 3 KLQICVEPTS--QKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKK----LYMVPY 56
Query: 68 VDRHQAGVYQCTATNGVG 85
VD G Y C N
Sbjct: 57 VDLEHQGTYWCHVYNDRD 74
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 86.5 bits (214), Expect = 5e-21
Identities = 32/180 (17%), Positives = 52/180 (28%), Gaps = 45/180 (25%)
Query: 8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK-------SLEG 60
P + L + TI+L C A G P PS W K +
Sbjct: 212 PRTPALVQKP--LELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVS 269
Query: 61 FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL----------------------- 97
++ ++ +G Y C N VG +V+ L V
Sbjct: 270 GTLIIKDAVVEDSGKYLCVVNNSVGG-ESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFT 328
Query: 98 CKI----------LPSGEK-SLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 146
C+ + G+ + +E V + G+YQC N L++
Sbjct: 329 CQYTGNPIKTVSWMKDGKAIGHSESVLRIESVKKEDKGMYQCFVRNDRES-AEASAELKL 387
Score = 80.0 bits (197), Expect = 1e-18
Identities = 36/147 (24%), Positives = 55/147 (37%), Gaps = 24/147 (16%)
Query: 7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKD-----------SSLPSGE 55
P P+N ++ +ECKASGNP+P IIW + D G+
Sbjct: 2 KGPVFLKEPTN-RIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGK 60
Query: 56 KSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCKILPSGEKSLEGFSITL 115
F + + H A VY C A N G ++ D+ + + + +
Sbjct: 61 LVFPPFRAEDYRQEVH-AQVYACLARNQFGSIISRDVHVRA---------VVAQYYEADV 110
Query: 116 EK--VDRHQAGVYQCTATNGVGDPVTV 140
K V R + V +C + V D V V
Sbjct: 111 NKEHVIRGNSAVIKCLIPSFVADFVEV 137
Score = 74.6 bits (183), Expect = 8e-17
Identities = 22/91 (24%), Positives = 35/91 (38%), Gaps = 8/91 (8%)
Query: 6 MVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITL 65
P S + P TV G C+ +GNP+ ++ W K ++ E L +
Sbjct: 305 TAPLSAKIDPPT--QTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESVL-----RI 357
Query: 66 EKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
E V + G+YQC N L++
Sbjct: 358 ESVKKEDKGMYQCFVRNDRES-AEASAELKL 387
Score = 55.3 bits (133), Expect = 5e-10
Identities = 19/145 (13%), Positives = 36/145 (24%), Gaps = 18/145 (12%)
Query: 7 VPPSIRTSPSNGQLTVRKGGTITLECKA---SGNPVPSIIWSKKDSSLPSGEKSLEGFSI 63
V + V +G + ++C + V + W + +G +
Sbjct: 102 VAQYYEADVNK--EHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYL 159
Query: 64 TLE-------KVDRHQA-GVYQCTATNGVGDPVTVDMTLEVLCKILPSGEKS--LEGFSI 113
L +V YQC + + + T L P +
Sbjct: 160 VLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQ 219
Query: 114 TLEKVDRHQAGVYQCTATNGVGDPV 138
++ C A G P
Sbjct: 220 KPLELMVAHTISLLCPAQ---GFPA 241
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 83.3 bits (206), Expect = 5e-21
Identities = 28/188 (14%), Positives = 57/188 (30%), Gaps = 51/188 (27%)
Query: 8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK---SLEGFSIT 64
+ S S + + G + C A G P ++ + + S ++ EG
Sbjct: 2 LLQVTISLSK--VELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSR 59
Query: 65 L--EKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCK----ILPSGEKSLEGFSITLE-- 116
L + AG+Y+C AT+ G + LE+ K + S ++ +G +
Sbjct: 60 LTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCR 119
Query: 117 -------------------------------------KVDRHQAGVYQCTATNGVGDPVT 139
+++ G+Y+C +
Sbjct: 120 VSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEID 179
Query: 140 V-DMTLEV 146
D+ + V
Sbjct: 180 FRDIIVIV 187
Score = 76.4 bits (188), Expect = 2e-18
Identities = 14/95 (14%), Positives = 36/95 (37%), Gaps = 7/95 (7%)
Query: 7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGE----KSLEGFS 62
+ R S ++G + C+ S +P P++ W + + + L +
Sbjct: 95 QKLTFREVVSP--QEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNN 152
Query: 63 ITLEKVDRHQAGVYQCTATNGVGDPVTV-DMTLEV 96
+ + +++ G+Y+C + D+ + V
Sbjct: 153 LQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIV 187
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 82.9 bits (205), Expect = 7e-21
Identities = 27/189 (14%), Positives = 55/189 (29%), Gaps = 52/189 (27%)
Query: 8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKS----LEGFSI 63
+ R S ++G + C+ S +P P++ W + + + + L ++
Sbjct: 2 MLTFREVVSP--QEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNL 59
Query: 64 TLEKVDRHQAGVYQCTATN-GVGDPVTVDMTLEVLCKILPSGEKSL------EGFSITLE 116
+ +++ G+Y+C G+ D+ + V S + G +T
Sbjct: 60 QILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFS 119
Query: 117 --------------------------------------KVDRHQAGVYQCTATNGVGDPV 138
+ G Y C ATN G+
Sbjct: 120 CRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGE-D 178
Query: 139 TVDMTLEVL 147
L+V
Sbjct: 179 EKQAFLQVF 187
Score = 81.0 bits (200), Expect = 4e-20
Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 4/94 (4%)
Query: 7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK---SLEGFSI 63
VPP+I + T +G +T C+ASG+P P+I W + + EK +
Sbjct: 95 VPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTEL 154
Query: 64 TLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97
T+ + G Y C ATN G+ L+V
Sbjct: 155 TVRNIINSDGGPYVCRATNKAGE-DEKQAFLQVF 187
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 83.4 bits (206), Expect = 9e-21
Identities = 43/200 (21%), Positives = 63/200 (31%), Gaps = 62/200 (31%)
Query: 8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLE-------- 59
P I P++ L V+K TL CK G P P+I W K + + EK
Sbjct: 9 SPRIIEHPTD--LVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGA 66
Query: 60 -GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLC-----KILPSGEKSLEGFSI 113
F T++ G Y C A N VG V+ +L++ ++ P + +G +
Sbjct: 67 LFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETA 126
Query: 114 TLE----------------------------------------------KVDRHQAGVYQ 127
LE V+ G Y+
Sbjct: 127 LLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYK 186
Query: 128 CTATNGVGDPVTVDMTLEVL 147
C A N VG + L V
Sbjct: 187 CIAQNLVGTRESSYAKLIVQ 206
Score = 72.2 bits (177), Expect = 2e-16
Identities = 28/106 (26%), Positives = 43/106 (40%), Gaps = 13/106 (12%)
Query: 3 QLQMVPPSIRTSPSNGQLTVRKGGTITLEC-KASGNPVPSIIWSKKDSSLPSGEKS---- 57
Q+ ++ R P + V KG T LEC G P P++IW K L +
Sbjct: 103 QIAVLRDDFRVEPKD--TRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGA 160
Query: 58 ------LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97
++G ++ + V+ G Y+C A N VG + L V
Sbjct: 161 SSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQ 206
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 80.1 bits (198), Expect = 9e-21
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 6/93 (6%)
Query: 8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGE---KSLEGFSIT 64
PP I P+N T+ GT L+CKA+G+P+P I W K+ + P + E ++
Sbjct: 8 PPIILQGPAN--QTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQ 65
Query: 65 LEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97
++ + G Y C AT+ G+ + L+V
Sbjct: 66 IKNLRISDTGTYTCVATSSSGE-TSWSAVLDVT 97
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 80.1 bits (198), Expect = 1e-20
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 6/93 (6%)
Query: 7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK---SLEGFSI 63
V P+I + N T G +I + C ASGNP P I+W K + +L ++
Sbjct: 9 VAPTITGNLEN--QTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNL 66
Query: 64 TLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
T+ +V + G+Y C A + +G V+ +
Sbjct: 67 TIRRVRKEDEGLYTCQACSVLGC-AKVEAFFII 98
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 83.3 bits (206), Expect = 2e-20
Identities = 29/191 (15%), Positives = 54/191 (28%), Gaps = 52/191 (27%)
Query: 6 MVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK----SLEGF 61
M + S S + + G + C A G P SI W + EG
Sbjct: 2 MALLQVTISLSK--VELSVGESKFFTCTAIGEP-ESIDWYNPQGEKIISTQRVVVQKEGV 58
Query: 62 SITLE--KVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCK----ILPSGEKSLEGFSITL 115
L + AG+Y+C AT+ G + LE+ K + S ++ +G +
Sbjct: 59 RSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEV 118
Query: 116 E---------------------------------------KVDRHQAGVYQCTATNGVGD 136
+++ G+Y+C
Sbjct: 119 VCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARG 178
Query: 137 PVTVDMTLEVL 147
+ + ++
Sbjct: 179 EIDFRDIIVIV 189
Score = 82.9 bits (205), Expect = 4e-20
Identities = 25/190 (13%), Positives = 57/190 (30%), Gaps = 52/190 (27%)
Query: 7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKS----LEGFS 62
+ R S ++G + C+ S +P P++ W + + + + L +
Sbjct: 97 QKLTFREVVSP--QEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNN 154
Query: 63 ITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL------------------------- 97
+ + +++ G+Y+C + + ++
Sbjct: 155 LQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTF 214
Query: 98 -CK----------------ILPSGEK---SLEGFSITLEKVDRHQAGVYQCTATNGVGDP 137
C+ ++ EK +T+ + G Y C ATN G+
Sbjct: 215 SCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGE- 273
Query: 138 VTVDMTLEVL 147
L+V
Sbjct: 274 DEKQAFLQVF 283
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 80.6 bits (199), Expect = 5e-20
Identities = 24/192 (12%), Positives = 55/192 (28%), Gaps = 55/192 (28%)
Query: 8 PPSIRTSPSNGQLTVRKGGTITLECKASGNP-VPSIIWSKKDSSLPSGEKS--------L 58
+ PS + G + C+ +G+ I W + S +
Sbjct: 2 VLQVDIVPSQ--GEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDD 59
Query: 59 EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCKIL----PSGEKSLEGFSIT 114
+ ++T+ + AG+Y+C T G + +++ K++ P+ ++ EG
Sbjct: 60 DSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAV 119
Query: 115 LE---------------------------------------KVDRHQAGVYQCTATNGVG 135
+ + + G Y+C
Sbjct: 120 IVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILAR 179
Query: 136 DPVTV-DMTLEV 146
+ D+ + V
Sbjct: 180 GEINFKDIQVIV 191
Score = 76.8 bits (189), Expect = 2e-18
Identities = 14/95 (14%), Positives = 32/95 (33%), Gaps = 7/95 (7%)
Query: 7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGE----KSLEGFS 62
+ +P+ ++G + C + P+IIW K + + L
Sbjct: 99 QKLMFKNAPTP--QEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNY 156
Query: 63 ITLEKVDRHQAGVYQCTATNGVGDPVTV-DMTLEV 96
+ + + + G Y+C + D+ + V
Sbjct: 157 LQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIV 191
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 80.9 bits (200), Expect = 5e-20
Identities = 39/192 (20%), Positives = 59/192 (30%), Gaps = 57/192 (29%)
Query: 8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK---SLEGFSIT 64
P IR + +T + G L C+ G P+P I W + L K S +G + T
Sbjct: 7 APGIRKEMKD--VTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHT 64
Query: 65 L--EKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCK-------ILPSGEKSLEGFSITL 115
L ++ GVY C ATN VG+ V L + L G ++ L
Sbjct: 65 LTVMTEEQEDEGVYTCIATNEVGE-VETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRL 123
Query: 116 E-KV--------------------DRHQ--------------------AGVYQCTATNGV 134
+ AG Y+ +N
Sbjct: 124 HVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVF 183
Query: 135 GDPVTVDMTLEV 146
G V + +E+
Sbjct: 184 GT-VDAILDVEI 194
Score = 70.1 bits (172), Expect = 6e-16
Identities = 20/97 (20%), Positives = 34/97 (35%), Gaps = 8/97 (8%)
Query: 7 VPPSIRTSPSNGQ-LTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK-----SLEG 60
P + G T+ L G PVP++ W L + E +
Sbjct: 99 ATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHY 158
Query: 61 FSITLEKVDRHQ-AGVYQCTATNGVGDPVTVDMTLEV 96
+ ++ V R AG Y+ +N G V + +E+
Sbjct: 159 THLVMKNVQRKTHAGKYKVQLSNVFGT-VDAILDVEI 194
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 80.5 bits (199), Expect = 6e-20
Identities = 43/193 (22%), Positives = 59/193 (30%), Gaps = 58/193 (30%)
Query: 8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSK-----KDSSLPSGEKSLEGFS 62
P+ + + V +G T T E SG PVP + W + S+LP + S
Sbjct: 5 APTFTQPLQS--VVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGR 62
Query: 63 ITL--EKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCKILP-------SGEKSLEGFSI 113
L V + +G Y ATNG G T L V + P +G +
Sbjct: 63 AKLTIPAVTKANSGRYSLKATNGSGQ-ATSTAELLVKAETAPPNFVQRLQSMTVRQGSQV 121
Query: 114 TLE-KV--------------------DRHQ-------------------AGVYQCTATNG 133
L+ +V Q +G Y ATN
Sbjct: 122 RLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNS 181
Query: 134 VGDPVTVDMTLEV 146
VG T L V
Sbjct: 182 VGR-ATSTAELLV 193
Score = 74.0 bits (182), Expect = 2e-17
Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 8/99 (8%)
Query: 3 QLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK---SLE 59
+ + PP+ + +TVR+G + L+ + +G P P + + + + + S S E
Sbjct: 98 KAETAPPNFVQRLQS--MTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQE 155
Query: 60 GFSITLE--KVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
G +L + +G Y ATN VG T L V
Sbjct: 156 GDLYSLLIAEAYPEDSGTYSVNATNSVGR-ATSTAELLV 193
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 79.9 bits (197), Expect = 1e-19
Identities = 27/195 (13%), Positives = 52/195 (26%), Gaps = 59/195 (30%)
Query: 8 PPSIRTSPSNGQLTVRKGGTITLECKA-SGNPVPSIIWSKKDSSLPSGEKS--------- 57
+P N +T +G T TL C+ P + W + L + +
Sbjct: 2 ESPFVGNPGN--ITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGED 59
Query: 58 -----LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL--------------- 97
+ + + + G YQC G V+ + +
Sbjct: 60 EQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVA 119
Query: 98 --------CKI-----------------LPSGEKSLEGFSITLEKVDRHQAGVYQCTATN 132
C+ L + S+ + ++ + + C A N
Sbjct: 120 ANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGPQRSLHVPGLN--KTSSFSCEAHN 177
Query: 133 GVGDPVTVDMTLEVL 147
G + T+ VL
Sbjct: 178 AKGVTTSRTATITVL 192
Score = 76.5 bits (188), Expect = 2e-18
Identities = 20/92 (21%), Positives = 34/92 (36%), Gaps = 5/92 (5%)
Query: 7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVP-SIIWSKKDSSLPSGEKSLEGFSITL 65
P P + TV L C+A G P P ++W + L + S+ +
Sbjct: 105 GLPYFLEEPED--RTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGPQRSLHV 162
Query: 66 EKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97
++ + + C A N G + T+ VL
Sbjct: 163 PGLN--KTSSFSCEAHNAKGVTTSRTATITVL 192
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 77.4 bits (191), Expect = 1e-19
Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 8/95 (8%)
Query: 7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK-----SLEGF 61
+ I T P + +TV +G + C G PVP++ W +K L + + +
Sbjct: 13 LAARILTKPRS--MTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKS 70
Query: 62 SITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
+ + V G Y N G + TL +
Sbjct: 71 TFEISSVQASDEGNYSVVVENSEGK-QEAEFTLTI 104
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 83.1 bits (205), Expect = 1e-19
Identities = 40/193 (20%), Positives = 66/193 (34%), Gaps = 52/193 (26%)
Query: 5 QMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSIT 64
+ PP IR + T+ G ++ L+C A GNP P I W + + ++ G +T
Sbjct: 426 RFDPPVIRQAFQE--ETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVT 483
Query: 65 LE----------KVDRHQAGVYQCTATNGVGD---------------------PVTVDMT 93
+ V + G+Y+C A + VG + T
Sbjct: 484 VNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQMEKKAIVAGET 543
Query: 94 LEVLCKI----------------LPSGEK--SLEGFSITLEKVDR-HQAGVYQCTATNGV 134
L V C + LP K ++ +E V+R Y C A N
Sbjct: 544 LIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVERNSDQATYTCVAKNQE 603
Query: 135 GDPVTVDMTLEVL 147
G + ++V+
Sbjct: 604 GYSARGSLEVQVM 616
Score = 82.3 bits (203), Expect = 2e-19
Identities = 33/179 (18%), Positives = 47/179 (26%), Gaps = 50/179 (27%)
Query: 2 EQLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK----- 56
E + P + + T T+ L C A G PVP W K +
Sbjct: 240 EPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLND 299
Query: 57 --SLEGFSITLEKVDRHQAGVYQCTATNGVG------------------DP----VTVDM 92
++ ++ +G Y C N VG DP V
Sbjct: 300 RVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGR 359
Query: 93 TLEVLC----------------KILPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVG 135
C K + E L +E V + G+YQC N
Sbjct: 360 PAVFTCQYTGNPIKTVSWMKDGKAIGHSESVL-----RIESVKKEDKGMYQCFVRNDRE 413
Score = 81.1 bits (200), Expect = 7e-19
Identities = 37/190 (19%), Positives = 59/190 (31%), Gaps = 54/190 (28%)
Query: 7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK--SLEGFSIT 64
P IR + G T+ + C +G P+ SI+W + + +LP K ++
Sbjct: 526 GLPYIRQMEK---KAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLI 582
Query: 65 LEKVDR-HQAGVYQCTATNGVGDPVTVDMTLEVL------------------------CK 99
+E V+R Y C A N G + ++V+ C
Sbjct: 583 IENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCS 642
Query: 100 ------------------ILPSGEKSL-----EGFSITLEKVDRHQAGVYQCTATNGVGD 136
I + G +T+E V+ AG + C A N G
Sbjct: 643 VPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGH 702
Query: 137 PVTVDMTLEV 146
L V
Sbjct: 703 -QQFTTPLNV 711
Score = 80.0 bits (197), Expect = 1e-18
Identities = 35/193 (18%), Positives = 55/193 (28%), Gaps = 61/193 (31%)
Query: 7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLE 66
P S + P TV G C+ +GNP+ ++ W K ++ E L +E
Sbjct: 342 APLSAKIDPPT--QTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESVL-----RIE 394
Query: 67 KVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCKI-------LPSGEKSLEGFSITLE--- 116
V + G+YQC N L++ + E G S+ L+
Sbjct: 395 SVKKEDKGMYQCFVRNDRES-AEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVA 453
Query: 117 ------------------------------------------KVDRHQAGVYQCTATNGV 134
V + G+Y+C A + V
Sbjct: 454 GGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKV 513
Query: 135 GDPVTVDMTLEVL 147
G L V
Sbjct: 514 GV-AEHSAKLNVY 525
Score = 73.0 bits (179), Expect = 4e-16
Identities = 35/149 (23%), Positives = 53/149 (35%), Gaps = 18/149 (12%)
Query: 2 EQLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSL----PSGEKS 57
P P+N ++ +ECKASGNP+P IIW + D + P +
Sbjct: 32 PDADQKGPVFLKEPTN-RIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQI 90
Query: 58 LEGFSITLEKVDRH------QAGVYQCTATNGVGDPVTVDMTLEVLCKILPSGEKSLEGF 111
+ A VY C A N G ++ D+ + + E +
Sbjct: 91 SSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRA--VVAQYYEADVNK- 147
Query: 112 SITLEKVDRHQAGVYQCTATNGVGDPVTV 140
E V R + V +C + V D V V
Sbjct: 148 ----EHVIRGNSAVIKCLIPSFVADFVEV 172
Score = 72.7 bits (178), Expect = 6e-16
Identities = 36/194 (18%), Positives = 63/194 (32%), Gaps = 54/194 (27%)
Query: 6 MVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVP-SIIWSKKDSSLPSGEK------SL 58
MV P I + + + G +TL C G +P +I W+ ++
Sbjct: 616 MVLPRIIP-FAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGR 674
Query: 59 EGFSITLEKVDRHQAGVYQCTATNGVG-----------DP-----------VTVDMTLEV 96
G +T+E V+ AG + C A N G P +V
Sbjct: 675 RGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPRWILEPTDKAFAQGSDAKV 734
Query: 97 LCK------------------------ILPSGEKSLEGFSITLEKVDRHQAGVYQCTATN 132
CK + S +E ++ ++ + + G Y C A N
Sbjct: 735 ECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAIN 794
Query: 133 GVGDPVTVDMTLEV 146
G+G ++ + + V
Sbjct: 795 GIGSGLSAVIMISV 808
Score = 55.7 bits (134), Expect = 4e-10
Identities = 24/207 (11%), Positives = 44/207 (21%), Gaps = 70/207 (33%)
Query: 7 VPPSIRTSPSNGQLTVRKGGTITLECKA---SGNPVPSIIWSKKDSSLPSGEKSLEG-FS 62
V + V +G + ++C + V + W + +G +
Sbjct: 137 VAQYYEADVNK--EHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYL 194
Query: 63 ITLE------KVDR-HQAGVYQCTATNGVGDPVTVDMTLEVLCKILPSGEKS-------- 107
+ +V YQC + + + T L P
Sbjct: 195 VLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAK 254
Query: 108 ------LEGFSITLE------------------------------------------KVD 119
++ L
Sbjct: 255 FDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAV 314
Query: 120 RHQAGVYQCTATNGVGDPVTVDMTLEV 146
+G Y C N VG +V+ L V
Sbjct: 315 VEDSGKYLCVVNNSVGG-ESVETVLTV 340
Score = 31.4 bits (71), Expect = 0.088
Identities = 17/126 (13%), Positives = 28/126 (22%), Gaps = 53/126 (42%)
Query: 73 AGVYQCTATNGVGDP-------------------------VTVDMTLEVLCK-------- 99
++ A G + E+ CK
Sbjct: 11 LMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPE 70
Query: 100 -------------------ILPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTV 140
I G+ F + + H A VY C A N G ++
Sbjct: 71 IIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVH-AQVYACLARNQFGSIISR 129
Query: 141 DMTLEV 146
D+ +
Sbjct: 130 DVHVRA 135
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural
protein, cell membrane, cytoplasm, cytoskeleton,
disease mutation, immunoglobulin domain; NMR {Homo
sapiens}
Length = 100
Score = 77.0 bits (190), Expect = 2e-19
Identities = 28/100 (28%), Positives = 42/100 (42%), Gaps = 9/100 (9%)
Query: 6 MVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK----SLEGF 61
M PP P N +++ +G ++ K SG P P + W ++ S + E
Sbjct: 3 MGPPRFIQVPEN--MSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKG 60
Query: 62 SITLE--KVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCK 99
+L V AG Y C A N G+ T + L+VL K
Sbjct: 61 LHSLIFEVVRASDAGAYACVAKNRAGE-ATFTVQLDVLAK 99
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 77.0 bits (190), Expect = 2e-19
Identities = 20/97 (20%), Positives = 44/97 (45%), Gaps = 10/97 (10%)
Query: 7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK-------SLE 59
+PP I PS+ +++ +G +T+ C +G P P + WS + S E+ + +
Sbjct: 4 IPPKIEALPSD--ISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDD 61
Query: 60 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
++ + V + G+Y + N G + + + +
Sbjct: 62 LTTLIIMDVQKQDGGLYTLSLGNEFGS-DSATVNIHI 97
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted
in U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 77.1 bits (190), Expect = 2e-19
Identities = 31/93 (33%), Positives = 43/93 (46%), Gaps = 6/93 (6%)
Query: 8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGE---KSLEGFSIT 64
PP IR P N TV GT L C A+G+PVP+I+W K + + + K LE +
Sbjct: 8 PPVIRQGPVN--QTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQ 65
Query: 65 LEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97
+ G Y C A+ G+ T +EV
Sbjct: 66 IRYAKLGDTGRYTCIASTPSGE-ATWSAYIEVQ 97
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 75.9 bits (187), Expect = 3e-19
Identities = 22/91 (24%), Positives = 35/91 (38%), Gaps = 7/91 (7%)
Query: 8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEK 67
+ P V GGT+TL C+ P P I W K LP + L +
Sbjct: 10 EVQLVVEPEG--GAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSP----VLILPE 63
Query: 68 VDRHQAGVYQCTATNGVGDP-VTVDMTLEVL 97
+ G Y C AT+ P + +++ ++
Sbjct: 64 IGPQDQGTYSCVATHSSHGPQESRAVSISII 94
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 75.6 bits (186), Expect = 5e-19
Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 3/90 (3%)
Query: 8 PPSIRTSPSNGQLTVRKGGTITLECKA-SGNPVPSIIWSKKDSSLPSGEKSLEGFSITLE 66
P + Q +VR G +T C A S +P +++W++ + +T+
Sbjct: 9 PIMVTVEEQRSQ-SVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNGILTIR 67
Query: 67 KVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
V AG Y CT +N TL V
Sbjct: 68 NVQPSDAGTYVCTGSNMFA-MDQGTATLHV 96
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 75.1 bits (185), Expect = 7e-19
Identities = 23/93 (24%), Positives = 32/93 (34%), Gaps = 5/93 (5%)
Query: 6 MVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITL 65
V PS + + V +G L+C G PVP I W + + E L
Sbjct: 9 EVAPSFSSVLKD--CAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVAEL 66
Query: 66 E--KVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
G Y C A N +G V+ + V
Sbjct: 67 HIQDALPEDHGTYTCLAENALGQ-VSCSAWVTV 98
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 75.1 bits (185), Expect = 7e-19
Identities = 21/95 (22%), Positives = 34/95 (35%), Gaps = 8/95 (8%)
Query: 7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK-----SLEGF 61
+ P I T+ + ++ G T LE G P P+ W+ DS +
Sbjct: 1 LKPKILTASRK--IKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTT 58
Query: 62 SITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
SI R +G Y+ N +G+ + V
Sbjct: 59 SIFFPSAKRADSGNYKLKVKNELGE-DEAIFEVIV 92
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 80.5 bits (198), Expect = 8e-19
Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 2/91 (2%)
Query: 7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLE-GFSITL 65
I + S+ + + + P W+ S P +K L+ G+SI+
Sbjct: 323 EKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISK 382
Query: 66 EKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
+HQ G Y A N T TL +
Sbjct: 383 FCNHKHQPGEYIFHAENDDAQ-FTKMFTLNI 412
Score = 77.0 bits (189), Expect = 1e-17
Identities = 28/182 (15%), Positives = 51/182 (28%), Gaps = 45/182 (24%)
Query: 7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKS----LEGFS 62
++ + + + V +ITL+ S +W K SSL S
Sbjct: 48 SSGTVYEAAA---VEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVS 104
Query: 63 ITLEKVDRHQAGVYQCTATNGVGD-----PVTVDMTLEVL----------------CK-- 99
+ + K+ QAG Y + + V++ TL C
Sbjct: 105 MVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKMENQDALVCISE 164
Query: 100 ---------------ILPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTL 144
E+S + + +C A N +G T T+
Sbjct: 165 SVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTI 224
Query: 145 EV 146
++
Sbjct: 225 DL 226
Score = 69.7 bits (170), Expect = 6e-15
Identities = 25/183 (13%), Positives = 41/183 (22%), Gaps = 53/183 (28%)
Query: 8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEK 67
+ L C + P P + W DS S ++ EK
Sbjct: 140 TLLYTLRRPY---FRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEK 196
Query: 68 V-DRHQAGVYQCTATNGVGDP---------------------VTVDMTLEVLCK------ 99
V +C A N +G + V L + CK
Sbjct: 197 VLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNH 256
Query: 100 ----------------------ILPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDP 137
+ + + V R+ G Y C+++
Sbjct: 257 GFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQS 316
Query: 138 VTV 140
V
Sbjct: 317 ALV 319
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 77.1 bits (190), Expect = 1e-18
Identities = 38/197 (19%), Positives = 59/197 (29%), Gaps = 61/197 (30%)
Query: 7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLE------- 59
+ P + N L VR TL CK +G+P P + W ++ + +
Sbjct: 3 MAPHFKEELRN--LNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGG 60
Query: 60 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCKIL---------PSGEKSLEG 110
+ + V A VYQ ATN G V+ +LEV +L G
Sbjct: 61 YHQLIIASVTDDDATVYQVRATNQGGS-VSGTASLEVEVPAKIHLPKTLEGMGAVHALRG 119
Query: 111 FSITLE-----------------------------------------KVDRHQAGVYQCT 129
++++ V+R AG Y
Sbjct: 120 EVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVC 179
Query: 130 ATNGVGDPVTVDMTLEV 146
A N G + L+V
Sbjct: 180 AKNRFGI-DQKTVELDV 195
Score = 69.4 bits (170), Expect = 1e-15
Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 9/98 (9%)
Query: 5 QMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK----SLEG 60
++ P + +G ++++ SG P P I W K + +
Sbjct: 101 KIHLPKTLEGMGA--VHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRS 158
Query: 61 FSITL--EKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
F+ + V+R AG Y A N G + L+V
Sbjct: 159 FTSLVFPNGVERKDAGFYVVCAKNRFGI-DQKTVELDV 195
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 74.3 bits (183), Expect = 3e-18
Identities = 18/97 (18%), Positives = 34/97 (35%), Gaps = 6/97 (6%)
Query: 6 MVPPSIRTSPSNGQ-LTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLE----G 60
PP IR Q + G + L G P P ++W+K + L + +
Sbjct: 19 AEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRVHVRTSDFD 78
Query: 61 FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97
+ + R +G Y+ + T + + V+
Sbjct: 79 TVFFVRQAARSDSGEYELSVQIENMK-DTATIRIRVV 114
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 79.4 bits (195), Expect = 3e-18
Identities = 22/135 (16%), Positives = 40/135 (29%), Gaps = 5/135 (3%)
Query: 7 VPPSIRTSPSNGQ-LTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITL 65
P + + G + + K G P P I W K L S G +T+
Sbjct: 326 EKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGHVLTI 385
Query: 66 EKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCKILPSGEKSLEGFSITLEKVDRHQAGV 125
+V G Y TN + + ++ + P + + ++
Sbjct: 386 MEVSERDTGNYTVILTNPISK-EKQSHVVSLVVYVPPQIGE--KSLISPVDSYQYGTTQT 442
Query: 126 YQCTATNGVGDPVTV 140
CT + P +
Sbjct: 443 LTCTVY-AIPPPHHI 456
Score = 75.6 bits (185), Expect = 5e-17
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 6/93 (6%)
Query: 7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK---SLEGFSI 63
V P+I + N T G +I + C ASGNP P I+W K + +L ++
Sbjct: 665 VAPTITGNLEN--QTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNL 722
Query: 64 TLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
T+ +V + G+Y C A + +G V+ +
Sbjct: 723 TIRRVRKEDEGLYTCQACSVLGC-AKVEAFFII 754
Score = 74.8 bits (183), Expect = 9e-17
Identities = 34/196 (17%), Positives = 60/196 (30%), Gaps = 58/196 (29%)
Query: 8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSK--------------KDSSLPS 53
+ SPS+ + + G + L C A I ++ +D S
Sbjct: 223 IYDVVLSPSH-GIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQS 281
Query: 54 GEKSLEGFSI-TLEKVDRHQAGVYQCTATNGVGD-------------------------P 87
G + + S T++ V R G+Y C A++G+
Sbjct: 282 GSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVE 341
Query: 88 VTVDMTLEVLCKI----------------LPSGEKSLEGFSITLEKVDRHQAGVYQCTAT 131
TV + + K L S G +T+ +V G Y T
Sbjct: 342 ATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGHVLTIMEVSERDTGNYTVILT 401
Query: 132 NGVG-DPVTVDMTLEV 146
N + + + ++L V
Sbjct: 402 NPISKEKQSHVVSLVV 417
Score = 65.5 bits (159), Expect = 2e-13
Identities = 25/210 (11%), Positives = 53/210 (25%), Gaps = 74/210 (35%)
Query: 7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK---------- 56
P I P + + +++L C A + ++ W K
Sbjct: 549 RGPEITLQP---DMQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKN 605
Query: 57 ---------------SLEGFSITLEKVDRHQAGVYQCTATNGVGDP-------------- 87
+ + + L+ G Y C A +
Sbjct: 606 LDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERV 665
Query: 88 ------------VTVDMTLEVLC----------------KILPSGEK---SLEGFSITLE 116
++ ++EV C + L ++T+
Sbjct: 666 APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIR 725
Query: 117 KVDRHQAGVYQCTATNGVGDPVTVDMTLEV 146
+V + G+Y C A + +G V+ +
Sbjct: 726 RVRKEDEGLYTCQACSVLGC-AKVEAFFII 754
Score = 63.6 bits (154), Expect = 7e-13
Identities = 26/184 (14%), Positives = 45/184 (24%), Gaps = 57/184 (30%)
Query: 5 QMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLE----- 59
+ P + LT++ T+ + C G +W S + E
Sbjct: 28 SLDLPRLSIQKD--ILTIKANTTLQITC--RGQRDLDWLWPNNQSGSEQRVEVTECSDGL 83
Query: 60 -GFSITLEKVDRHQAGVYQCTATNGVG-----------------------DPVTV----- 90
++T+ KV + G Y+C V +
Sbjct: 84 FCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQDYRSPFIASVSDQHGVVYITENKN 143
Query: 91 -DMTLE----------VLCKILPSGEKSLEGFSI--------TLEKVDRHQAGVYQCTAT 131
+ + LC P +G I T+ AG+ C A
Sbjct: 144 KTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAK 203
Query: 132 NGVG 135
Sbjct: 204 INDE 207
Score = 59.4 bits (143), Expect = 2e-11
Identities = 28/200 (14%), Positives = 53/200 (26%), Gaps = 62/200 (31%)
Query: 9 PSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSS--LPSGEK--SLEGFSIT 64
S+ +T K T+ + C S + + + ++ +P G + T
Sbjct: 127 ASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFT 186
Query: 65 LEKVDRHQAGVYQCTATNGVGD--------------------------PVTVDMTLEVLC 98
+ AG+ C A ++V L + C
Sbjct: 187 IPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNC 246
Query: 99 KI------------------------------LPSGEKSLEGFSI-TLEKVDRHQAGVYQ 127
SG + + S T++ V R G+Y
Sbjct: 247 TARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYT 306
Query: 128 CTATNGVGDPVTVDMTLEVL 147
C A++G+ + V
Sbjct: 307 CAASSGLMT-KKNSTFVRVH 325
Score = 54.8 bits (131), Expect = 1e-09
Identities = 26/142 (18%), Positives = 40/142 (28%), Gaps = 13/142 (9%)
Query: 6 MVPPSIRTSPSNGQL-TVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSIT 64
VPP I + + + G T TL C P P I + + S+T
Sbjct: 418 YVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVT 477
Query: 65 LEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCKILPSGEKSLEGFSITLEKVDRHQAG 124
V N + +E TL + +
Sbjct: 478 NPYPCEEWRSVEDFQGGNKIEVNKNQFALIE-----------GKNKTVSTLVIQAANVSA 526
Query: 125 VYQCTATNGVGDPVTVDMTLEV 146
+Y+C A N VG ++ V
Sbjct: 527 LYKCEAVNKVGR-GERVISFHV 547
Score = 37.8 bits (87), Expect = 6e-04
Identities = 15/102 (14%), Positives = 30/102 (29%), Gaps = 39/102 (38%)
Query: 73 AGVYQCTATNGVG-----------------DPVTVDM--TLEVLCK-------ILPSGEK 106
++ C T D +T+ TL++ C+ + P+ +
Sbjct: 9 VALWLCVETRAASVGLPSVSLDLPRLSIQKDILTIKANTTLQITCRGQRDLDWLWPNNQS 68
Query: 107 SLE-------------GFSITLEKVDRHQAGVYQCTATNGVG 135
E ++T+ KV + G Y+C
Sbjct: 69 GSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDL 110
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 75.2 bits (185), Expect = 3e-18
Identities = 33/174 (18%), Positives = 56/174 (32%), Gaps = 41/174 (23%)
Query: 8 PPSIRTSPSNGQLTVRKGGTITLECKASGNP-VPSIIWSKKDSSLPSGEKSLEGFSITLE 66
PP + V + ++TL C+ + +P SI W + +P+ +
Sbjct: 2 PPKAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQPS-----YRF 56
Query: 67 KVDRHQAGVYQCTATNGVG-DPVTVDMTLEVLCKILPSGEKSLEGFSITLE--------- 116
K + + +G Y C DPV + + E L P E EG +I L
Sbjct: 57 KANNNDSGEYTCQTGQTSLSDPVHLTVLFEWLVLQTPHLE-FQEGETIMLRCHSWKDKPL 115
Query: 117 ------------------------KVDRHQAGVYQCTATNGVGDPVTVDMTLEV 146
+ + +G Y CT G + +T+ V
Sbjct: 116 VKVTFFQNGKSQKFSHLDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITV 169
Score = 56.7 bits (137), Expect = 4e-11
Identities = 16/91 (17%), Positives = 35/91 (38%), Gaps = 7/91 (7%)
Query: 7 VPPSIRTSPSNGQLTVRKGGTITLECKASGN-PVPSIIWSKKDSSLPSGEKSLEGFSITL 65
+ +P ++G TI L C + + P+ + + + S S + ++
Sbjct: 85 FEWLVLQTPHL---EFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKF---SHLDPTFSI 138
Query: 66 EKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
+ + +G Y CT G + +T+ V
Sbjct: 139 PQANHSHSGDYHCTGNIGYTLFSSKPVTITV 169
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 77.4 bits (190), Expect = 4e-18
Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 11/93 (11%)
Query: 6 MVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDS-SLPSGEKSLEGFSIT 64
+ P + G T + T C+A GNP+P + K + LP GE
Sbjct: 181 LYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGE--------- 231
Query: 65 LEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97
V R G Y C A + G+ VT ++T+ VL
Sbjct: 232 SVTVTRDLEGTYLCRARSTQGE-VTREVTVNVL 263
Score = 63.2 bits (153), Expect = 6e-13
Identities = 30/177 (16%), Positives = 50/177 (28%), Gaps = 46/177 (25%)
Query: 7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLE 66
P+ + V +G +T++C+A ++ P + + L+
Sbjct: 97 SFPAPNVILTK--PEVSEGTEVTVKCEAHPRAKVTLNGVPAQPLGPRAQ-------LLLK 147
Query: 67 KVDRHQAGVYQCTATNGVGDPVTVD---MTLEVLCK------ILPSGEKSLEGFSITLE- 116
+ C+AT V + L VL P E T
Sbjct: 148 ATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMC 207
Query: 117 --------------------------KVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 147
V R G Y C A + G+ VT ++T+ VL
Sbjct: 208 QAWGNPLPELKCLKDGTFPLPIGESVTVTRDLEGTYLCRARSTQGE-VTREVTVNVL 263
Score = 47.7 bits (113), Expect = 2e-07
Identities = 26/181 (14%), Positives = 42/181 (23%), Gaps = 46/181 (25%)
Query: 8 PPSIRTSPSNGQLTVRKGGTITLECKASGN---PVPSIIWSKKDSSLPS----GEKSLEG 60
PP + + + T+ C G + + D L G S
Sbjct: 6 PPQLVSPR-----VLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSA 60
Query: 61 FSITLEKVDRHQAGVYQCTATNGVGD--------------PVTVDMTLEVL--------C 98
+ + C G P + EV C
Sbjct: 61 KASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKC 120
Query: 99 KILPSGEKSLEGFSI---------TLEKVDRHQAGVYQCTATNGVGDPVTVD---MTLEV 146
+ P + +L G L+ + C+AT V + L V
Sbjct: 121 EAHPRAKVTLNGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRV 180
Query: 147 L 147
L
Sbjct: 181 L 181
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 75.4 bits (185), Expect = 4e-18
Identities = 15/93 (16%), Positives = 36/93 (38%), Gaps = 9/93 (9%)
Query: 5 QMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSIT 64
Q++ + + + +G ++TL ++ PS+ G K+L +
Sbjct: 95 QLLVFGLTANSDT---HLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKTL-----S 146
Query: 65 LEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97
+ +++ +G + CT V + + VL
Sbjct: 147 VSQLELQDSGTWTCTVLQNQK-KVEFKIDIVVL 178
Score = 73.5 bits (180), Expect = 3e-17
Identities = 22/174 (12%), Positives = 49/174 (28%), Gaps = 48/174 (27%)
Query: 21 TVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSL---------------------- 58
+KG T+ L C AS W + G +
Sbjct: 6 LGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQ 65
Query: 59 EGFSITLEKVDRHQAGVYQCTATNGVGD--------------PVTVDMTLEVLCK----- 99
F + ++ + + Y C + + + +L + +
Sbjct: 66 GNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPPGS 125
Query: 100 ------ILPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 147
P G+ G ++++ +++ +G + CT V + + VL
Sbjct: 126 SPSVQCRSPRGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQK-KVEFKIDIVVL 178
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens}
PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 73.6 bits (181), Expect = 4e-18
Identities = 26/96 (27%), Positives = 35/96 (36%), Gaps = 8/96 (8%)
Query: 7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK---SLEGFSI 63
PP P + V G L+C G P P ++W K L + E+ +G
Sbjct: 12 SPPCFLRFPRP--VRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEH 69
Query: 64 TLE--KVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97
L AGVY C A N G+ + VL
Sbjct: 70 GLLLTAALPTDAGVYVCRARNAAGE-AYAAAAVTVL 104
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 73.1 bits (180), Expect = 4e-18
Identities = 27/95 (28%), Positives = 39/95 (41%), Gaps = 8/95 (8%)
Query: 7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK-----SLEGF 61
P I T + TV KA+G P P+ IW+K ++ G K GF
Sbjct: 5 SKPVIVTGLQD--TTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGF 62
Query: 62 SITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
+ + K D +G+Y CT N G V+ L +
Sbjct: 63 FLEIHKTDTSDSGLYTCTVKNSAGS-VSSSCKLTI 96
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 76.5 bits (188), Expect = 8e-18
Identities = 30/182 (16%), Positives = 49/182 (26%), Gaps = 49/182 (26%)
Query: 8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEK 67
P I PS +L V G T+TL C ++G S+ W S + + G ++T
Sbjct: 4 APVI--EPSGPELVVEPGETVTLRCVSNG----SVEWDGPISPYWTLDPESPGSTLTTRN 57
Query: 68 VDRHQAGVYQCTATNGVG-----------DP------------VTVDMTLEVLC------ 98
G Y+CT DP V + C
Sbjct: 58 ATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPA 117
Query: 99 ------------KILPSGEKSL--EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTL 144
+ + + K + Y C + + + L
Sbjct: 118 LKDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWL 177
Query: 145 EV 146
+V
Sbjct: 178 KV 179
Score = 73.1 bits (179), Expect = 2e-16
Identities = 25/104 (24%), Positives = 43/104 (41%), Gaps = 11/104 (10%)
Query: 2 EQLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKS---- 57
++ PP I+ PS L +G + C A+ V + K+ + +
Sbjct: 180 NRVHPEPPQIKLEPSK--LVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQ 237
Query: 58 ----LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97
+ +++L VD AG+Y C A+N VG T M +V+
Sbjct: 238 DNYYKKVRALSLNAVDFQDAGIYSCVASNDVGT-RTATMNFQVV 280
Score = 70.4 bits (172), Expect = 2e-15
Identities = 28/196 (14%), Positives = 50/196 (25%), Gaps = 57/196 (29%)
Query: 7 VPPSIRTSPSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEKS---LEGFS 62
P + ++TV +G L C + S+ ++ +
Sbjct: 87 DPAHSWNLLA-QEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRG 145
Query: 63 ITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCKIL--------PSGEKSLEGFSIT 114
+ K + Y C + + + L+V PS + G +
Sbjct: 146 FIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQ 205
Query: 115 LE-------------------------------------------KVDRHQAGVYQCTAT 131
+ VD AG+Y C A+
Sbjct: 206 IVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVAS 265
Query: 132 NGVGDPVTVDMTLEVL 147
N VG T M +V+
Sbjct: 266 NDVGT-RTATMNFQVV 280
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 72.5 bits (178), Expect = 9e-18
Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 9/98 (9%)
Query: 8 PPSIRTSP--SNGQLTVRKGGTITLECKASGNPVPSIIWSK------KDSSLPSGEKSLE 59
P + V T+ C A GNP+P++ W K ++ + + +
Sbjct: 4 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ 63
Query: 60 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97
+S+ +E V G Y C N G + L+V+
Sbjct: 64 HWSLIMESVVPSDKGNYTCVVENEYGS-INHTYHLDVV 100
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 76.2 bits (187), Expect = 1e-17
Identities = 34/184 (18%), Positives = 54/184 (29%), Gaps = 49/184 (26%)
Query: 7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLE 66
P I PS +L V+ G T+TL C +G S+ W S + ++
Sbjct: 3 SIPVI--EPSVPELVVKPGATVTLRCVGNG----SVEWDGPPSPHWTLYSDGSSSILSTN 56
Query: 67 KVDRHQAGVYQCTATNGVG-----------DP------------VTVDMTLEVLC----- 98
G Y+CT DP V D + C
Sbjct: 57 NATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTDP 116
Query: 99 -------------KILPSGEK--SLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMT 143
+ L T+ + Q+ YQC+A G +++ +
Sbjct: 117 VLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQCSALMGGRKVMSISIR 176
Query: 144 LEVL 147
L+V
Sbjct: 177 LKVQ 180
Score = 68.8 bits (168), Expect = 6e-15
Identities = 21/99 (21%), Positives = 42/99 (42%), Gaps = 11/99 (11%)
Query: 7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLE------- 59
PP++ P+ L +G + C AS V ++ + +++ + + +
Sbjct: 185 GPPALTLVPAE--LVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQ 242
Query: 60 -GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97
++ L++VD AG Y C A+N G + M V+
Sbjct: 243 KVLTLNLDQVDFQHAGNYSCVASNVQGK-HSTSMFFRVV 280
Score = 68.5 bits (167), Expect = 8e-15
Identities = 28/196 (14%), Positives = 50/196 (25%), Gaps = 57/196 (29%)
Query: 7 VPPSIRTSPSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSS-LPSGEK--SLEGFS 62
P + V + L C + + + L
Sbjct: 87 DPARPWNVLAQEV-VVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHG 145
Query: 63 ITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCKIL--------PSGEKSLEGFSIT 114
T+ + Q+ YQC+A G +++ + L+V I P+ + G +
Sbjct: 146 FTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQ 205
Query: 115 LE-------------------------------------------KVDRHQAGVYQCTAT 131
+ +VD AG Y C A+
Sbjct: 206 IVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVAS 265
Query: 132 NGVGDPVTVDMTLEVL 147
N G + M V+
Sbjct: 266 NVQGK-HSTSMFFRVV 280
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 74.2 bits (182), Expect = 1e-17
Identities = 32/178 (17%), Positives = 53/178 (29%), Gaps = 45/178 (25%)
Query: 7 VP--PSIRTSPSNGQLTVRKGGTITLECKASGNP-VPSIIWSKKDSSLPSGEKSLEGFSI 63
VP P + +P + KG +TL C + V S W S SL
Sbjct: 1 VPQKPKVSLNPPW--NRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETNSSL----- 53
Query: 64 TLEKVDRHQAGVYQCTATNGVG-DPVTVDMTLEVLCKILPSGEKSLEGFSITLE------ 116
+ +G Y+C +PV +++ + L + S E +EG + L
Sbjct: 54 NIVNAKFEDSGEYKCQHQQVNESEPVYLEVFSDWL-LLQASAEVVMEGQPLFLRCHGWRN 112
Query: 117 ---------------------------KVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 147
+G Y CT D + + + V+
Sbjct: 113 WDVYKVIYYKDGEALKYWYENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVI 170
Score = 55.7 bits (134), Expect = 1e-10
Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 6/96 (6%)
Query: 3 QLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGN-PVPSIIWSKKDSSLPSGEKSLEGF 61
L++ + S V +G + L C N V +I+ K +L E
Sbjct: 80 YLEVFSDWLLLQASAE--VVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKY---WYENH 134
Query: 62 SITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97
+I++ +G Y CT D + + + V+
Sbjct: 135 NISITNATVEDSGTYYCTGKVWQLDYESEPLNITVI 170
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 72.0 bits (177), Expect = 1e-17
Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 9/99 (9%)
Query: 7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGE------KSLEG 60
P +P + LTV++G ++CK SG P P + W + +
Sbjct: 8 FRPHFLQAPGD--LTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGV 65
Query: 61 FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCK 99
S+ +E V AG+Y C ATN G + + L V K
Sbjct: 66 HSLIIEPVTSRDAGIYTCIATNRAGQ-NSFSLELVVAAK 103
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic
adhesion, arterial smooth muscle cells; 0.96A {Homo
sapiens}
Length = 99
Score = 71.2 bits (175), Expect = 2e-17
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 9/96 (9%)
Query: 7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK----SLEGFS 62
PP+ + S + +VR+G + + + G P P + W + + ++ EG
Sbjct: 4 APPTFKVSLMD--QSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGL 61
Query: 63 ITLE--KVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
L +R AG Y C A N G + LEV
Sbjct: 62 CRLRILAAERGDAGFYTCKAVNEYGA-RQCEARLEV 96
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 74.8 bits (183), Expect = 6e-17
Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 3/92 (3%)
Query: 7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPS-IIWSKKDSSLPSGEKSLEGFSITL 65
P + +G + + L CKA NP + W+ + SLP G ++
Sbjct: 230 YEPEVTIEGFDGN-WYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQNRTLFFK 288
Query: 66 EKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97
++ AG Y C ATN +G + + + +
Sbjct: 289 GPINYSLAGTYICEATNPIGTR-SGQVEVNIT 319
Score = 61.3 bits (148), Expect = 4e-12
Identities = 26/194 (13%), Positives = 47/194 (24%), Gaps = 54/194 (27%)
Query: 6 MVPPSIRTSPSNGQLTVRK---GGTITLECKAS-GNPVPSIIWSKKDSSLPSGEKSLE-- 59
M P+ + L +K + C ++ G P + W + ++
Sbjct: 128 MAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPN 187
Query: 60 -----GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL----------------- 97
L C + +TL V
Sbjct: 188 GTVTVISRYRLVPSREAHQQSLACIVNYHMD-RFKESLTLNVQYEPEVTIEGFDGNWYLQ 246
Query: 98 -------CKI-----------------LPSGEKSLEGFSITLEKVDRHQAGVYQCTATNG 133
CK LP G ++ ++ AG Y C ATN
Sbjct: 247 RMDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQNRTLFFKGPINYSLAGTYICEATNP 306
Query: 134 VGDPVTVDMTLEVL 147
+G + + + +
Sbjct: 307 IGTR-SGQVEVNIT 319
Score = 50.1 bits (119), Expect = 3e-08
Identities = 23/163 (14%), Positives = 44/163 (26%), Gaps = 31/163 (19%)
Query: 2 EQLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNP----VPSIIWSKKDSSLPS---- 53
+Q+ P + + + G + L C + + + W K +
Sbjct: 8 QQMGRDPSQVVQVNDS--MYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAI 65
Query: 54 -------------------GEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTL 94
S +I L +++ GVY C + L
Sbjct: 66 YNPSMGVSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNL 125
Query: 95 EVLCKILPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDP 137
V+ P+ + +K + V CT+ NG
Sbjct: 126 TVM--AKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPS 166
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1,
BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 69.7 bits (171), Expect = 9e-17
Identities = 16/90 (17%), Positives = 32/90 (35%), Gaps = 5/90 (5%)
Query: 8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK-SLEGFSITLE 66
S + V G + L C+ + SI W + L + + G + ++
Sbjct: 3 SGSSGVEVES--FLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRITGEEVEVQ 59
Query: 67 KVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
+G+Y C ++ G T ++ V
Sbjct: 60 DSVPADSGLYACVTSSPSGS-DTTYFSVNV 88
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 72.6 bits (178), Expect = 1e-16
Identities = 34/209 (16%), Positives = 54/209 (25%), Gaps = 70/209 (33%)
Query: 7 VPPSIRTSP--SNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK------SL 58
P + V T+ C A GNP+P++ W K +
Sbjct: 14 RAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRN 73
Query: 59 EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCK---------ILPSGEKSLE 109
+ +S+ +E V G Y C N G + L+V+ + LP+ ++
Sbjct: 74 QHWSLIMESVVPSDKGNYTCVVENEYGS-INHTYHLDVVERSRHRPILQAGLPANASTVV 132
Query: 110 GFSITLE---------------------------------------------------KV 118
G + V
Sbjct: 133 GGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNV 192
Query: 119 DRHQAGVYQCTATNGVGDPVTVDMTLEVL 147
AG Y C +N +G L VL
Sbjct: 193 TEADAGEYICKVSNYIGQ-ANQSAWLTVL 220
Score = 71.5 bits (175), Expect = 3e-16
Identities = 23/113 (20%), Positives = 34/113 (30%), Gaps = 19/113 (16%)
Query: 1 MEQLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEG 60
+E+ + P P+N + GG + CK + P I W K S
Sbjct: 111 VERSRHRPILQAGLPAN--ASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGL 168
Query: 61 FSITLEKVDRHQ----------------AGVYQCTATNGVGDPVTVDMTLEVL 97
+ + K AG Y C +N +G L VL
Sbjct: 169 PYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQ-ANQSAWLTVL 220
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 73.4 bits (180), Expect = 1e-16
Identities = 22/99 (22%), Positives = 39/99 (39%), Gaps = 9/99 (9%)
Query: 5 QMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGE------KSL 58
+ + P +T+++G + L C G+P P + W K + +L S + ++
Sbjct: 219 KNRARVLGGLPDV--VTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAG 276
Query: 59 EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97
T+ V +G Y N G T D T+ V
Sbjct: 277 RTAYFTINGVSTADSGKYGLVVKNKYGS-ETSDFTVSVF 314
Score = 70.3 bits (172), Expect = 2e-15
Identities = 27/198 (13%), Positives = 48/198 (24%), Gaps = 61/198 (30%)
Query: 6 MVPPSIRTSPSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEK-SLEGFSI 63
P S V + L+CK + I+W K + + EK +
Sbjct: 5 FTGPHFVEYLSW---EVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGIC 61
Query: 64 TLE--KVDRHQAGVYQCTATNGVG----------------------DPVTVDMTLEVLC- 98
TL + + AG+Y+ + G L++
Sbjct: 62 TLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQST 121
Query: 99 --------------------------KILPSG--EKSLEGFSITLE--KVDRHQAGVYQC 128
I S + + G I L+ + + G Y
Sbjct: 122 AEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVM 181
Query: 129 TATNGVGDPVTVDMTLEV 146
+G + L
Sbjct: 182 ELFDGKT-GHQKTVDLSG 198
Score = 54.9 bits (132), Expect = 6e-10
Identities = 21/143 (14%), Positives = 39/143 (27%), Gaps = 6/143 (4%)
Query: 2 EQLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK---SL 58
E + V I S ++ ++ G + WS S++ ++ +
Sbjct: 100 ELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGV 159
Query: 59 EGFSITLE--KVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCKILPSGEKSLEGFSITLE 116
G I L+ + + G Y +G + L E + E
Sbjct: 160 TGEQIWLQINEPTPNDKGKYVMELFDGKT-GHQKTVDLSGQAYDEAYAEFQRLKQAAIAE 218
Query: 117 KVDRHQAGVYQCTATNGVGDPVT 139
K G T G +
Sbjct: 219 KNRARVLGGLPDVVTIQEGKALN 241
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 69.7 bits (171), Expect = 2e-16
Identities = 21/103 (20%), Positives = 41/103 (39%), Gaps = 10/103 (9%)
Query: 2 EQLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSG------- 54
P P + V +G ++ LEC+ S P P + W + + +
Sbjct: 9 SHEHKRAPMFIYKPQS--KKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLY 66
Query: 55 EKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97
+ + ++ ++ V++ AG Y +A N G T + L+V
Sbjct: 67 QDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGV-TTCNTRLDVT 108
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 71.8 bits (176), Expect = 2e-16
Identities = 21/99 (21%), Positives = 37/99 (37%), Gaps = 9/99 (9%)
Query: 5 QMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK------SL 58
+ + P +T+++G + L C G+P P + W K + +L + +
Sbjct: 114 KNRARVLGGLPDV--VTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAG 171
Query: 59 EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97
T+ V +G Y N G T D T+ V
Sbjct: 172 RTAYFTINGVSTADSGKYGLVVKNKYGS-ETSDFTVSVF 209
Score = 47.9 bits (114), Expect = 1e-07
Identities = 11/68 (16%), Positives = 21/68 (30%), Gaps = 6/68 (8%)
Query: 24 KGGTITLECK-ASGNPVPSIIWSKKDSSLPSGEK---SLEGFSITLE--KVDRHQAGVYQ 77
I L + WS S++ ++ + G I L+ + + G Y
Sbjct: 16 TAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYV 75
Query: 78 CTATNGVG 85
+G
Sbjct: 76 MELFDGKT 83
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 68.9 bits (169), Expect = 3e-16
Identities = 23/100 (23%), Positives = 35/100 (35%), Gaps = 8/100 (8%)
Query: 8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK-----SLEGFS 62
P I P + VR G ++ L K +G + W K + E S G
Sbjct: 7 GPQIIQFPED--QKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSK 64
Query: 63 ITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCKILP 102
+T+ + G Y N +G + L V+ K P
Sbjct: 65 LTILAARQEHCGCYTLLVENKLGS-RQAQVNLTVVDKPDP 103
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 72.9 bits (179), Expect = 3e-16
Identities = 38/196 (19%), Positives = 62/196 (31%), Gaps = 61/196 (31%)
Query: 9 PSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLP--SGEKSLEG------ 60
P I N T + G +TL C A G P+P I W + G+KSL+G
Sbjct: 2 PHI-IQLKN--ETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKG 58
Query: 61 ----FSITLEKVDRHQAGVYQCTATNGVG-----------DP-----------VTVDMTL 94
S+ ++ V +G Y C A + +G +
Sbjct: 59 QHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPI 118
Query: 95 EVLCK-----------------ILPSGEKSLEGFS------ITLEKVDRHQAGVYQCTAT 131
+ C + +L+ +S + + + G Y CTAT
Sbjct: 119 NISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTAT 178
Query: 132 NGVGDPVTVDMTLEVL 147
N +G + L +
Sbjct: 179 NHIGT-RFQEYILALA 193
Score = 72.1 bits (177), Expect = 7e-16
Identities = 23/98 (23%), Positives = 36/98 (36%), Gaps = 10/98 (10%)
Query: 7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSG-----EKSLEGF 61
P ++ + +G I + C NP SI W + LP+ + G
Sbjct: 99 YAPKFISNQTI--YYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGR 156
Query: 62 SITLE--KVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97
+ LE + G Y CTATN +G + L +
Sbjct: 157 KMILEIAPTSDNDFGRYNCTATNHIGT-RFQEYILALA 193
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 72.1 bits (177), Expect = 4e-16
Identities = 40/197 (20%), Positives = 58/197 (29%), Gaps = 59/197 (29%)
Query: 7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSL-PSGEK----SLEGF 61
+ P + N L VR TL CK +G+P P + W ++ + G K +G
Sbjct: 3 MAPHFKEELRN--LNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGG 60
Query: 62 SITLE--KVDRHQAGVYQCTATNGVG-----------DP----------------VTVDM 92
L V A VYQ ATN G P
Sbjct: 61 YHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGE 120
Query: 93 TLEVLCK-----------------ILPSGEKSL---EGFSITL--EKVDRHQAGVYQCTA 130
+ + I +G + F+ + V+R AG Y A
Sbjct: 121 VVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCA 180
Query: 131 TNGVGDPVTVDMTLEVL 147
N G + L+V
Sbjct: 181 KNRFGI-DQKTVELDVA 196
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 71.7 bits (175), Expect = 6e-16
Identities = 24/191 (12%), Positives = 41/191 (21%), Gaps = 53/191 (27%)
Query: 6 MVPPSIRTSPSNGQLTVRKGGTITLECKA-SGNPVPSIIWSKKDSSLPSGEKSLEGFS-- 62
+ P + + C + G P I W +P+ + S
Sbjct: 115 LAKPQNTAEVQK--VQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGT 172
Query: 63 ------ITLEKVDRHQAGVYQCTATNGVG-DPVTVDMTLEVL-----CKILPSGEKSLEG 110
L + C + P + + L V L
Sbjct: 173 VTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQ 232
Query: 111 FSITLE-----------------------------------KVDRHQAGVYQCTATNGVG 135
TL VD+ C TN +G
Sbjct: 233 NEATLTCDARSNPEPTGYNWSTTMGPLPPFAVAQGAQLLIRPVDKPINTTLICNVTNALG 292
Query: 136 DPVTVDMTLEV 146
++T++V
Sbjct: 293 A-RQAELTVQV 302
Score = 48.6 bits (115), Expect = 1e-07
Identities = 22/214 (10%), Positives = 42/214 (19%), Gaps = 79/214 (36%)
Query: 11 IRTSPSNGQLTVRKGGTITLECKASGNPVP-----SIIWSKKDSSLP------------- 52
+ +P+ + G ++TL C + + W++ S
Sbjct: 3 VVQAPTQ--VPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYS 60
Query: 53 ----------SGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCK--- 99
L S+ + + G Y C +VD+ L VL K
Sbjct: 61 ESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQN 120
Query: 100 -ILPSGEKSLEGFSITLE------------------------------------------ 116
+
Sbjct: 121 TAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWI 180
Query: 117 --KVDRHQAGVYQCTATNGVG-DPVTVDMTLEVL 147
+ C + P + + L V
Sbjct: 181 LVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVY 214
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 69.5 bits (170), Expect = 7e-16
Identities = 26/180 (14%), Positives = 57/180 (31%), Gaps = 44/180 (24%)
Query: 3 QLQMVP-PSIRTSPSNGQLTVRKGGTITLECKASGNPVPSII-WSKKDSSLPSGEKSLEG 60
+ + +P + P +V + ++TL+C+ + +P + W +S + S S
Sbjct: 1 RTEDLPKAVVFLEPQW--YSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQASSY-- 56
Query: 61 FSITLEKVDRHQAGVYQCTATNGVG-DPVTVDMTLEVLCKILPSGEKSLEGFSITLE--- 116
++ + +G Y+C DPV +++ + L + E I L
Sbjct: 57 ---FIDAATVNDSGEYRCQTNLSTLSDPVQLEVHIGWL-LLQAPRWVFKEEDPIHLRCHS 112
Query: 117 ------------------------------KVDRHQAGVYQCTATNGVGDPVTVDMTLEV 146
K +G Y C G + + + + +
Sbjct: 113 WKNTALHKVTYLQNGKDRKYFHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITI 172
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 69.7 bits (170), Expect = 8e-16
Identities = 10/88 (11%), Positives = 21/88 (23%), Gaps = 11/88 (12%)
Query: 7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSI--- 63
P ++ +T+ C + P P + W + P+ + G
Sbjct: 103 KPLTLSVHSER--SQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKD 160
Query: 64 ------TLEKVDRHQAGVYQCTATNGVG 85
+ + C N
Sbjct: 161 GSLSVAVDLSLPKPWHLPVTCVGKNDKE 188
Score = 46.6 bits (110), Expect = 3e-07
Identities = 16/173 (9%), Positives = 35/173 (20%), Gaps = 61/173 (35%)
Query: 11 IRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDR 70
+ P Q+ + G + + P + ++ F + + +
Sbjct: 29 FKLGPGEEQVLI---GRMHHDVIFIEWPFRGFFDIHRSAN---------TFFLVVTAANI 76
Query: 71 HQAGVYQCTATNGVGDPVTVDMTLEVLCK----ILPSGEKSLEGFSITLE---------- 116
G Y C G VT L V+ + + + +T+
Sbjct: 77 SHDGNYLCRMKLGET-EVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPH 135
Query: 117 ----------------------------------KVDRHQAGVYQCTATNGVG 135
+ + C N
Sbjct: 136 VQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKE 188
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 71.6 bits (175), Expect = 9e-16
Identities = 39/196 (19%), Positives = 55/196 (28%), Gaps = 70/196 (35%)
Query: 20 LTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK------SLEGFSITLEKVDRHQA 73
L V T+ C A+GNP PSI W K + + +S+ +E V
Sbjct: 133 LAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDR 192
Query: 74 GVYQCTATNGVGDPVTVDMTLEVLCK---------ILPSGEKSLEGFSITLE-------- 116
G Y C N G + TL+VL + LP+ + ++ G +
Sbjct: 193 GNYTCVVENKFGS-IRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQ 251
Query: 117 ---------------------------------------------KVDRHQAGVYQCTAT 131
V AG Y C A
Sbjct: 252 PHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAG 311
Query: 132 NGVGDPVTVDMTLEVL 147
N +G L VL
Sbjct: 312 NSIGF-SHHSAWLVVL 326
Score = 70.8 bits (173), Expect = 2e-15
Identities = 15/92 (16%), Positives = 26/92 (28%), Gaps = 4/92 (4%)
Query: 7 VPPSIRTSPSNGQLTVRKGGTITLECKA-SGNPVPSIIWSKKDSSLPSGEK-SLEGFSIT 64
VP L G + L C G P+ +W K + L E+ + +
Sbjct: 7 VPGPEPGQQEQ--LVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGPQRLQ 64
Query: 65 LEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
+ +G Y C + +
Sbjct: 65 VLNASHEDSGAYSCRQRLTQRVLCHFSVRVTD 96
Score = 67.3 bits (164), Expect = 3e-14
Identities = 26/115 (22%), Positives = 34/115 (29%), Gaps = 21/115 (18%)
Query: 1 MEQLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPS------- 53
+E+ P P+N T G + CK + P I W K S
Sbjct: 215 LERSPHRPILQAGLPAN--QTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGT 272
Query: 54 -----------GEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97
E ++L V AG Y C A N +G L VL
Sbjct: 273 PYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGF-SHHSAWLVVL 326
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 67.1 bits (164), Expect = 9e-16
Identities = 18/93 (19%), Positives = 34/93 (36%), Gaps = 5/93 (5%)
Query: 5 QMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK-SLEGFSI 63
Q P + + L V G + L C+ + SI W + L + + G +
Sbjct: 6 QAQPWGVPVEVES--LLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRITGEEV 62
Query: 64 TLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
+ +G+Y C ++ G T ++ V
Sbjct: 63 EVRDSIPADSGLYACVTSSPSGS-DTTYFSVNV 94
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 69.9 bits (171), Expect = 9e-16
Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 11/100 (11%)
Query: 5 QMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK------SL 58
M P ++ P + +G + + C+ P +I W + LPS +
Sbjct: 16 HMYAPKLQ-GPVA--VYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNT 72
Query: 59 EGFSI-TLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97
S + + G Y CTA N +G +++ L
Sbjct: 73 PSASYLEVTPDSENDFGNYNCTAVNRIGQ-ESLEFILVQA 111
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 71.4 bits (174), Expect = 1e-15
Identities = 21/173 (12%), Positives = 48/173 (27%), Gaps = 48/173 (27%)
Query: 21 TVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK----------------------SL 58
+KG T+ L C AS W + G +
Sbjct: 5 LGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQ 64
Query: 59 EGFSITLEKVDRHQAGVYQCTATNGVGD--------------PVTVDMTLEVLCK----- 99
F + ++ + + Y C + + + +L + +
Sbjct: 65 GNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPPGS 124
Query: 100 ------ILPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 146
P G+ G ++++ +++ +G + CT V + + V
Sbjct: 125 SPSVQCRSPRGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQK-KVEFKIDIVV 176
Score = 71.0 bits (173), Expect = 2e-15
Identities = 18/114 (15%), Positives = 43/114 (37%), Gaps = 10/114 (8%)
Query: 3 QLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFS 62
++Q++ + + + +G ++TL ++ PS+ G K+L
Sbjct: 92 EVQLLVFGLTANSDT---HLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKTL---- 144
Query: 63 ITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLC-KILPSGEKSLEGFSITL 115
++ +++ +G + CT V + + VL + S EG +
Sbjct: 145 -SVSQLELQDSGTWTCTVLQNQK-KVEFKIDIVVLAFQKASSIVYKKEGEQVEF 196
Score = 44.4 bits (104), Expect = 3e-06
Identities = 20/159 (12%), Positives = 48/159 (30%), Gaps = 34/159 (21%)
Query: 21 TVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEG---------FSITLEKVDRH 71
+ G + + + + + I + K+ + + + +TL +
Sbjct: 206 KLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQ 265
Query: 72 QA--GVYQCTATNGVGD-------------PVTVDMTLEVLCKILPS--------GEKSL 108
A G G + ++T EV P +++
Sbjct: 266 YAGSGNLTLALEAKTGKLHQEVNLVVMRATQLQKNLTCEVWGPTSPKLMLSLKLENKEAK 325
Query: 109 EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 147
V +AG++QC ++ V ++ ++VL
Sbjct: 326 VSKREKAVWVLNPEAGMWQCLLSD--SGQVLLESNIKVL 362
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 70.0 bits (171), Expect = 1e-15
Identities = 26/137 (18%), Positives = 35/137 (25%), Gaps = 20/137 (14%)
Query: 2 EQLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKS---- 57
E+ P P+N T G + CK + P I W K S
Sbjct: 108 ERSPHRPILQAGLPAN--QTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTP 165
Query: 58 -------------LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCKILPSG 104
+ L V G Y C ATN +G L V
Sbjct: 166 YVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGV-AEKAFWLSVHGPRAAEE 224
Query: 105 EKSLEGFSITLEKVDRH 121
E + ++ H
Sbjct: 225 ELVEADEAGSVHHHHHH 241
Score = 69.6 bits (170), Expect = 2e-15
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 7/84 (8%)
Query: 20 LTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK------SLEGFSITLEKVDRHQA 73
L V T+ C A+GNP PSI W K + + +S+ +E V
Sbjct: 25 LAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDR 84
Query: 74 GVYQCTATNGVGDPVTVDMTLEVL 97
G Y C N G + TL+VL
Sbjct: 85 GNYTCVVENKFGS-IRQTYTLDVL 107
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 71.6 bits (175), Expect = 1e-15
Identities = 23/203 (11%), Positives = 52/203 (25%), Gaps = 66/203 (32%)
Query: 7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVP-SIIWSKKDSSLPSGEKSLEGF---- 61
P + S ++ +R+G T+ C W +++S EK
Sbjct: 210 AVPVVSVSKAS--YLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDF 267
Query: 62 ------SITLEKVDRHQAGVYQCTATNGVGDP-------------------------VTV 90
++T+ + +GV+ C A N G V
Sbjct: 268 NYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVND 327
Query: 91 DMTLEVLCKI---------------------------LPSGEKSLEGFSITLEKVDRHQA 123
++++ + + + L ++ +
Sbjct: 328 GENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEG 387
Query: 124 GVYQCTATNGVGDPVTVDMTLEV 146
G Y +N + + + V
Sbjct: 388 GTYTFLVSNSDVN-AAIAFNVYV 409
Score = 70.9 bits (173), Expect = 2e-15
Identities = 23/203 (11%), Positives = 46/203 (22%), Gaps = 64/203 (31%)
Query: 6 MVPPSIRTSPSNGQ-LTVRKGGTITLECKASGNPVPSII-WSKKDSSLPSGEKSLEGF-- 61
+ I P + V G + L + P P W + + +
Sbjct: 308 VDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSEN 367
Query: 62 --------SITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL---------------- 97
+ L ++ + G Y +N + + + V
Sbjct: 368 ESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVN-AAIAFNVYVNTKPEILTYDRLVNGML 426
Query: 98 -CK------------------------ILPSGEKSLEGFSI---------TLEKVDRHQA 123
C +LP ++L +++
Sbjct: 427 QCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHN 486
Query: 124 GVYQCTATNGVGDPVTVDMTLEV 146
G +C A N VG +
Sbjct: 487 GTVECKAYNDVGK-TSAYFNFAF 508
Score = 59.3 bits (143), Expect = 2e-11
Identities = 27/200 (13%), Positives = 45/200 (22%), Gaps = 63/200 (31%)
Query: 7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDS-SLPSGEK----SLEGF 61
P + + L ++ + C + V + LP + G
Sbjct: 113 DPAKLFLVDRS--LYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGI 170
Query: 62 SITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCKIL--------PSGEKSLEGFSI 113
I K H C+ ++ L+V + EG
Sbjct: 171 MIKSVKRAYH-RLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEF 229
Query: 114 TLE----------------------------------------------KVDRHQAGVYQ 127
T+ + +GV+
Sbjct: 230 TVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFM 289
Query: 128 CTATNGVGDPVTVDMTLEVL 147
C A N G V TLEV+
Sbjct: 290 CYANNTFGS-ANVTTTLEVV 308
Score = 43.5 bits (102), Expect = 6e-06
Identities = 23/136 (16%), Positives = 34/136 (25%), Gaps = 59/136 (43%)
Query: 5 QMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSIT 64
+ PPSI S L VR G I L C G + W+ +++ E
Sbjct: 33 EPSPPSIHPGKS--DLIVRVGDEIRLLCTDPG----FVKWTF-----EILDETNENKQNE 81
Query: 65 LEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCKILPSGEKSLEGFSITLEKVDRHQAG 124
EK + G
Sbjct: 82 W------------------------------------------------ITEKAEATNTG 93
Query: 125 VYQCTATNGVGDPVTV 140
Y CT +G+ + + V
Sbjct: 94 KYTCTNKHGLSNSIYV 109
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 68.0 bits (166), Expect = 2e-15
Identities = 23/105 (21%), Positives = 37/105 (35%), Gaps = 17/105 (16%)
Query: 2 EQLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGF 61
E+ V P + + + V +G +CK G P P ++W K D+ + F
Sbjct: 35 EEKPHVKPYFTKTILD--MEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRH----F 88
Query: 62 SITLEKVDRHQ----------AGVYQCTATNGVGDPVTVDMTLEV 96
I ++ Y C A N +G+ T L V
Sbjct: 89 QIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGE-ATCTAELLV 132
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 70.7 bits (172), Expect = 3e-15
Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 11/93 (11%)
Query: 6 MVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDS-SLPSGEKSLEGFSIT 64
+ P + G T + T C+A GNP+P + K + LP GE
Sbjct: 366 LYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGE--------- 416
Query: 65 LEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97
V R G Y C A + G+ VT ++T+ VL
Sbjct: 417 SVTVTRDLEGTYLCRARSTQGE-VTREVTVNVL 448
Score = 63.7 bits (154), Expect = 7e-13
Identities = 29/177 (16%), Positives = 50/177 (28%), Gaps = 46/177 (25%)
Query: 7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLE 66
P+ + V +G +T++C+A ++ + + L+
Sbjct: 282 SFPAPNVILTKP--EVSEGTEVTVKCEAHPRAKVTLNGVP-------AQPLGPRAQLLLK 332
Query: 67 KVDRHQAGVYQCTATNGVGDPV---TVDMTLEVL------CKILPSGEKSLEGFSITLE- 116
+ C+AT V + L VL + P E T
Sbjct: 333 ATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMC 392
Query: 117 --------------------------KVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 147
V R G Y C A + G+ VT ++T+ VL
Sbjct: 393 QAWGNPLPELKCLKDGTFPLPIGESVTVTRDLEGTYLCRARSTQGE-VTREVTVNVL 448
Score = 52.6 bits (125), Expect = 6e-09
Identities = 23/112 (20%), Positives = 43/112 (38%), Gaps = 12/112 (10%)
Query: 11 IRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFS-ITLEKVD 69
SPS + + +GG++ + C S + + ++ LP E L G + E +
Sbjct: 2 TSVSPSK--VILPRGGSVLVTCSTSCDQPMLLGI---ETPLPKKELLLPGNNRKVYELSN 56
Query: 70 RHQAGVYQCTATNGVGD-----PVTVDMTLEVLCKILPSGEKSLEGFSITLE 116
+ C + G +TV T E + ++ P G ++TL
Sbjct: 57 VQEDSQPMCYSNCPDGQSTAKTFLTVYWTPERV-ELAPLPSWQPVGKNLTLR 107
Score = 47.2 bits (111), Expect = 4e-07
Identities = 22/183 (12%), Positives = 37/183 (20%), Gaps = 38/183 (20%)
Query: 3 QLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGN---PVPSIIWSKKDSSLPS----GE 55
QLQ + T+ C G + + D L G
Sbjct: 181 QLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGN 240
Query: 56 KSLEGFSITLEKVDRHQAGVYQCTATNGVGD----------------------PVTVDMT 93
S + + C G V+
Sbjct: 241 DSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTE 300
Query: 94 LEVLCKILPS---------GEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTL 144
+ V C+ P + + L+ + C+AT V +
Sbjct: 301 VTVKCEAHPRAKVTLNGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQT 360
Query: 145 EVL 147
L
Sbjct: 361 REL 363
Score = 38.3 bits (88), Expect = 5e-04
Identities = 13/88 (14%), Positives = 25/88 (28%), Gaps = 5/88 (5%)
Query: 3 QLQMVPPSIRTSPSNGQLTVRKGGTITLECKASG-NPVPS--IIWSKKDSSLPSGEKSLE 59
L + R + G +TL C+ G P + ++ + + L E
Sbjct: 79 FLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGE 138
Query: 60 GFSITLE--KVDRHQAGVYQCTATNGVG 85
+T H + C +
Sbjct: 139 PAEVTTTVLVRRDHHGANFSCRTELDLR 166
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 67.0 bits (163), Expect = 3e-15
Identities = 19/96 (19%), Positives = 33/96 (34%), Gaps = 20/96 (20%)
Query: 8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSL--------- 58
+P + GG++ L C+A G+PVP I W + L
Sbjct: 21 MAGFVQAPLS--QQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRV 78
Query: 59 ---------EGFSITLEKVDRHQAGVYQCTATNGVG 85
+I+++ + G Y+C A+N
Sbjct: 79 HIHATYHQHAASTISIDTLVEEDTGTYECRASNDPD 114
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 66.7 bits (162), Expect = 4e-15
Identities = 27/144 (18%), Positives = 48/144 (33%), Gaps = 20/144 (13%)
Query: 7 VPPSIRTSPSNGQ---LTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSI 63
PP I + V G + L+ SG+P P++IW K +
Sbjct: 12 EPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPAR------ 65
Query: 64 TLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCKILPSGEKSLEGFSITLEKVDRHQA 123
+ + + V E + + T+E ++
Sbjct: 66 ----PAPDAPEDTGDSDEWVFDKKLLCETEGRV------RVETTKDRSIFTVEGAEKEDE 115
Query: 124 GVYQCTATNGVGDPVTVDMTLEVL 147
GVY T N VG+ V++T++V+
Sbjct: 116 GVYTVTVKNPVGE-DQVNLTVKVI 138
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 65.8 bits (161), Expect = 4e-15
Identities = 19/96 (19%), Positives = 28/96 (29%), Gaps = 8/96 (8%)
Query: 6 MVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK---SLEGFS 62
P I + V G P + W L K +
Sbjct: 6 DHAPRITLRMRS--HRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGV 63
Query: 63 ITLE--KVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
+TLE +G Y+ TN G+ + TL+V
Sbjct: 64 LTLEILDCHTDDSGTYRAVCTNYKGE-ASDYATLDV 98
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 68.2 bits (166), Expect = 4e-15
Identities = 21/96 (21%), Positives = 40/96 (41%), Gaps = 6/96 (6%)
Query: 5 QMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK---SLEGF 61
+N TV++ ++TL C + + +I W SL E+ S
Sbjct: 107 HQPVTQPFLQVTN--TTVKELDSVTLTCLS-NDIGANIQWLFNSQSLQLTERMTLSQNNS 163
Query: 62 SITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97
+ ++ + R AG YQC +N V + + L+++
Sbjct: 164 ILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDII 199
Score = 61.2 bits (148), Expect = 2e-12
Identities = 24/190 (12%), Positives = 46/190 (24%), Gaps = 63/190 (33%)
Query: 21 TVRKGGTITLECKASGNPVPSIIWSKKDSSLPSG---------------------EKSLE 59
V + + L + + W K +++ E
Sbjct: 10 QVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYS 69
Query: 60 GFSITLEKVDRHQAGVYQCTATNGVGD----------------------PVTVDMTLEVL 97
S+ + + GVY T+ TV V
Sbjct: 70 NGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVT 129
Query: 98 CKILPSGEK--------------------SLEGFSITLEKVDRHQAGVYQCTATNGVGDP 137
L + S + ++ + R AG YQC +N V
Sbjct: 130 LTCLSNDIGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVR 189
Query: 138 VTVDMTLEVL 147
+ + L+++
Sbjct: 190 RSNSIKLDII 199
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 68.0 bits (166), Expect = 5e-15
Identities = 27/180 (15%), Positives = 55/180 (30%), Gaps = 44/180 (24%)
Query: 3 QLQMVP-PSIRTSPSNGQLTVRKGGTITLECKASGNPVP-SIIWSKKDSSLPSGEKSLEG 60
+ + +P + P V + ++TL+C+ + +P S W +S + S S
Sbjct: 1 RTEDLPKAVVFLEPQWY--RVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQASSY-- 56
Query: 61 FSITLEKVDRHQAGVYQCTATNGVG-DPVTVDMTLEVLCKILPSGEKSLEGFSITLE--- 116
++ +G Y+C DPV +++ + L + E I L
Sbjct: 57 ---FIDAATVDDSGEYRCQTQLSTLSDPVQLEVHIGWL-LLQAPRWVFKEEDPIHLRCHS 112
Query: 117 ------------------------------KVDRHQAGVYQCTATNGVGDPVTVDMTLEV 146
K +G Y C G + + + + +
Sbjct: 113 WKNTALHKVTYLQNGKGRKYFHHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITI 172
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 69.7 bits (171), Expect = 6e-15
Identities = 23/101 (22%), Positives = 38/101 (37%), Gaps = 7/101 (6%)
Query: 1 MEQLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGE----- 55
IR + Q+ V +G T+ C+A G+P P+I+W L S +
Sbjct: 377 PNYFTCRRARIRDRKAQ-QVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRL 435
Query: 56 KSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
++ + G Y C A N G+ ++ L V
Sbjct: 436 TVFPDGTLEVRYAQVQDNGTYLCIAANAGGN-DSMPAHLHV 475
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 68.6 bits (167), Expect = 1e-14
Identities = 24/189 (12%), Positives = 46/189 (24%), Gaps = 53/189 (28%)
Query: 9 PSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSL-PSGEKSLEGFSITLEK 67
P+++ N +V G + L C+ G + W + + KS S+ L
Sbjct: 159 PTLKVQVPN--ASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTL 216
Query: 68 VD---RHQAGVYQCTATNGVG------------------DPVTVDMTLEVLCK------- 99
+ C A N VG +
Sbjct: 217 ANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPASVQLHTAVEMHHWCIPFSVDGQPAP 276
Query: 100 ---------------------ILPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPV 138
+ P+ +++ + L + G Y A N G
Sbjct: 277 SLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQ-A 335
Query: 139 TVDMTLEVL 147
+ + +
Sbjct: 336 SASIMAAFM 344
Score = 51.3 bits (122), Expect = 1e-08
Identities = 16/104 (15%), Positives = 28/104 (26%), Gaps = 13/104 (12%)
Query: 6 MVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK--------- 56
V ++ S T + + G P PS+ W S L
Sbjct: 242 SVQVNVSFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPA 301
Query: 57 ---SLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97
++ + L + G Y A N G + + +
Sbjct: 302 ANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQ-ASASIMAAFM 344
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 66.5 bits (162), Expect = 3e-14
Identities = 25/162 (15%), Positives = 45/162 (27%), Gaps = 43/162 (26%)
Query: 9 PSIRTSPSNGQLTVRKGGTITLECKASGNPVP-SIIWSKKDSSLPSGEKSLEGFSITLEK 67
I P ++V + T+TL C+ P S W ++ + S +
Sbjct: 2 AVITLQPPW--VSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTSTPSY-----RITS 54
Query: 68 VDRHQAGVYQCTATNGVG-DPVTVDMTLEVLCKILPSGEKSLEGFSITLE---------- 116
+ +G Y+C DP+ +++ L + S EG + L
Sbjct: 55 ASVNDSGEYRCQRGLSGRSDPIQLEIHRGWL-LLQVSSRVFTEGEPLALRCHAWKDKLVY 113
Query: 117 -----------------------KVDRHQAGVYQCTATNGVG 135
K + G Y C+
Sbjct: 114 NVLYYRNGKAFKFFHWNSNLTILKTNISHNGTYHCSGMGKHR 155
Score = 59.2 bits (143), Expect = 2e-11
Identities = 29/187 (15%), Positives = 58/187 (31%), Gaps = 48/187 (25%)
Query: 3 QLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGN-PVPSIIWSKKDSSLPSGEKSLEGF 61
QL++ + S+ +G + L C A + V ++++ + + +
Sbjct: 77 QLEIHRGWLLLQVSSR--VFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFHWNSN-L 133
Query: 62 SITLEKVDRHQAGVYQCTATNGVG------------------------DPVTVDMTLEVL 97
+I K + G Y C+ P+ + +
Sbjct: 134 TIL--KTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASVTSPLLEGNLVTLS 191
Query: 98 C--KILPS------------GEKSLEGFS----ITLEKVDRHQAGVYQCTATNGVGDPVT 139
C K+L G K+L G + + R +G+Y C A G+ +
Sbjct: 192 CETKLLLQRPGLQLYFSFYMGSKTLRGRNTSSEYQILTARREDSGLYWCEAATEDGNVLK 251
Query: 140 VDMTLEV 146
LE+
Sbjct: 252 RSPELEL 258
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 63.1 bits (154), Expect = 4e-14
Identities = 19/97 (19%), Positives = 28/97 (28%), Gaps = 9/97 (9%)
Query: 6 MVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK----SLEGF 61
M P I + TV +G + G P P W K + ++ E
Sbjct: 3 MEAPKIFERIQS--QTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDN 60
Query: 62 SITLE--KVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
L V + A N G+ + L V
Sbjct: 61 VCELVIRDVTGEDSASIMVKAINIAGE-TSSHAFLLV 96
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 65.5 bits (159), Expect = 5e-14
Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 7/96 (7%)
Query: 6 MVPPSIRTSPSNGQLTVRKGGTITLECKAS-GNPVPSIIWSKKDSSLP---SGEKSLEGF 61
+V PS +G + G L+C+ G+ W K S +
Sbjct: 119 LVKPSGTRCFVDG--SEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSP 176
Query: 62 SITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97
I+++ +G Y CT N VG + L+V+
Sbjct: 177 VISVKNASSEYSGTYSCTVQNRVGS-DQCMLRLDVV 211
Score = 52.8 bits (126), Expect = 2e-09
Identities = 31/213 (14%), Positives = 52/213 (24%), Gaps = 78/213 (36%)
Query: 10 SIRTSPSNGQLTVRKGGTITLECKASGNPVP----SIIWSKKDSSLPSGEKSL------- 58
SI T + KG T L CK + +P I W S ++ +
Sbjct: 2 SITTPEQR--IEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDK 59
Query: 59 ----------------------EGFSITLEKVDRHQAGVYQCTATNGVG----------- 85
SI + + G YQC G
Sbjct: 60 IYDNYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVL 119
Query: 86 -----------DPVTVDMTLEVLCK--------------------ILPSGEKSLEGFSIT 114
+ ++ C+ + + I+
Sbjct: 120 VKPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVIS 179
Query: 115 LEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 147
++ +G Y CT N VG + L+V+
Sbjct: 180 VKNASSEYSGTYSCTVQNRVGS-DQCMLRLDVV 211
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 65.9 bits (160), Expect = 8e-14
Identities = 28/203 (13%), Positives = 49/203 (24%), Gaps = 65/203 (32%)
Query: 6 MVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSS-LPSGEK----SLEG 60
P + L ++ + C + V + D LP+ G
Sbjct: 89 RDPAKLFLVGLP--LFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAG 146
Query: 61 FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCK--------ILPSGEKSLEGFS 112
+I K H+ +C A + TL+V + + +G +
Sbjct: 147 ITIKNVKRAYHR-LCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDT 205
Query: 113 ITL------------------------------------------------EKVDRHQAG 124
T+ +G
Sbjct: 206 FTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSG 265
Query: 125 VYQCTATNGVGDPVTVDMTLEVL 147
V+ C A N G V TL+V+
Sbjct: 266 VFMCYANNTFGS-ANVTTTLKVV 287
Score = 65.5 bits (159), Expect = 1e-13
Identities = 38/183 (20%), Positives = 57/183 (31%), Gaps = 49/183 (26%)
Query: 5 QMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSIT 64
+ PPSI P+ +L V G T++L C + W+ K + +
Sbjct: 9 EPSPPSI--HPAQSELIVEAGDTLSLTCIDPD----FVRWTFKTY--FNEMVENKKNEWI 60
Query: 65 LEKVDRHQAGVYQCTATNG--------VGDP-----------VTVDMTLEVLC------- 98
EK + + G Y C+ +NG V DP D V C
Sbjct: 61 QEKAEATRTGTYTCSNSNGLTSSIYVFVRDPAKLFLVGLPLFGKEDSDALVRCPLTDPQV 120
Query: 99 ----------KILPSGEK----SLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTL 144
K LP+ G +I K H+ +C A + TL
Sbjct: 121 SQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHR-LCVRCAAQRDGTWLHSDKFTL 179
Query: 145 EVL 147
+V
Sbjct: 180 KVR 182
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 62.6 bits (152), Expect = 9e-14
Identities = 27/110 (24%), Positives = 40/110 (36%), Gaps = 17/110 (15%)
Query: 7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVP-SIIWSKKDSSLPSG---------EK 56
PP I ++ + G ++C P P I WS K++ L SG
Sbjct: 13 GPPIISSTQTQ---HALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETIS 69
Query: 57 SLEGFSITL--EKVDR-HQAGVYQCTATNGVGDPVTVDMTLEVLCKILPS 103
+ EG TL + R +Y CTA N G T + L+ +
Sbjct: 70 TEEGVISTLTISNIVRADFQTIYNCTAWNSFGS-DTEIIRLKEQGSEMSG 118
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 61.3 bits (149), Expect = 2e-13
Identities = 15/101 (14%), Positives = 27/101 (26%), Gaps = 16/101 (15%)
Query: 7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK---------- 56
P+I S + GNP P++ W + L +
Sbjct: 3 FAPTITFLES-----PTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNH 57
Query: 57 SLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97
+ + L+ G Y A N G ++ +
Sbjct: 58 TEYHGCLQLDNPTHMNNGDYTLIAKNEYGK-DEKQISAHFM 97
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 61.6 bits (150), Expect = 2e-13
Identities = 21/96 (21%), Positives = 34/96 (35%), Gaps = 10/96 (10%)
Query: 8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSG------EKSLEGF 61
P + + +G +T C+ +GNP P I W K + ++ L+G
Sbjct: 8 APFFEMKLKH--YKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGT 65
Query: 62 -SITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
S+ G Y A N G ++ L V
Sbjct: 66 CSLHTTASTLDDDGNYTIMAANPQGR-ISCTGRLMV 100
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 64.7 bits (157), Expect = 2e-13
Identities = 20/106 (18%), Positives = 37/106 (34%), Gaps = 13/106 (12%)
Query: 3 QLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFS 62
+LQ+ ++ + VR+G ITL C GN V + W+ + + F
Sbjct: 176 RLQVSSINVSVNAVQ--TVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFL 233
Query: 63 I----------TLEKVDRHQAGVYQCTATNGVG-DPVTVDMTLEVL 97
+ + + +G Y C T V + + V+
Sbjct: 234 LDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITVV 279
Score = 64.0 bits (155), Expect = 4e-13
Identities = 24/178 (13%), Positives = 40/178 (22%), Gaps = 48/178 (26%)
Query: 14 SPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLE----GFSITLEKVD 69
+P +L + T L C S ++W + P + +TL +
Sbjct: 4 TPPGPELVLNVSSTFVLTCSGSA----PVVWERMSQEPPQEMAKAQDGTFSSVLTLTNLT 59
Query: 70 RHQAGVYQCTATNGVGDPVTVDMTLEVLCK----------ILPSGEKSLEGFSITLE--- 116
G Y CT + G L + E IT+
Sbjct: 60 GLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRV 119
Query: 117 ---------------------------KVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 147
+ Y C T G + + + L
Sbjct: 120 TDPQLVVTLHEKKGDVALPVPYDHQRGFSGIFEDRSYICKTTIGDREVDSDAYYVYRL 177
Score = 63.2 bits (153), Expect = 7e-13
Identities = 20/192 (10%), Positives = 43/192 (22%), Gaps = 57/192 (29%)
Query: 8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEK 67
+ + + + IT+ C+ + P + +K + +
Sbjct: 93 VGFLPNDAEELFIFLTEITEITIPCRVTD-PQLVVTLHEKKGDVALPVPYDHQRGFSG-- 149
Query: 68 VDRHQAGVYQCTATNGVGDPVTVDMTLEVLC------KILPSGEKSLEGFSITL------ 115
+ Y C T G + + + L + +G +ITL
Sbjct: 150 --IFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIG 207
Query: 116 ---------------------------------------EKVDRHQAGVYQCTATNGVG- 135
+ +G Y C T V
Sbjct: 208 NEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVND 267
Query: 136 DPVTVDMTLEVL 147
+ + V+
Sbjct: 268 HQDEKAINITVV 279
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin
superfamily, integrin-binding, cell adhesion protein;
1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A
1vsc_A
Length = 202
Score = 63.3 bits (153), Expect = 3e-13
Identities = 25/112 (22%), Positives = 45/112 (40%), Gaps = 8/112 (7%)
Query: 11 IRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLE--KV 68
I T+P + + + G +++L C +G P W + S +G+ + EG + TL V
Sbjct: 3 IETTPES-RYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPV 61
Query: 69 DRHQAGVYQCTATNGVGDPVTVDMTLEVLCK----ILPSGEKSLEGFSITLE 116
Y CTAT + + +E+ + G IT++
Sbjct: 62 SFGNEHSYLCTATCESR-KLEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVK 112
Score = 41.7 bits (97), Expect = 2e-05
Identities = 15/97 (15%), Positives = 27/97 (27%), Gaps = 13/97 (13%)
Query: 3 QLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGN---PVPSIIWSKKDSSLPSGEKSLE 59
Q+++ + G IT++C + I K D + S E +
Sbjct: 85 QVEIYSFPKDPEIHLSG-PLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLED 143
Query: 60 G---------FSITLEKVDRHQAGVYQCTATNGVGDP 87
+T V V C A + +
Sbjct: 144 ADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEM 180
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 63.4 bits (153), Expect = 4e-13
Identities = 14/116 (12%), Positives = 30/116 (25%), Gaps = 29/116 (25%)
Query: 8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKS---------- 57
++ + V +G IT+ C + ++ W + + E
Sbjct: 136 NNVHVSTAEV--VQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQ 193
Query: 58 ----------------LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97
++ + AG C G G + D + +L
Sbjct: 194 FGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQG-ELDADRSSTIL 248
Score = 47.2 bits (111), Expect = 3e-07
Identities = 24/130 (18%), Positives = 41/130 (31%), Gaps = 21/130 (16%)
Query: 9 PSIRTSPSNGQLTVRKGGTITLECK---ASGNPVPSIIWSKKDSSLPSGEKSLEGFSITL 65
++RT+ + + V GGT+ L C A+ P I W K S S + ++
Sbjct: 3 MTVRTTHTE--VEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYN--- 57
Query: 66 EKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCKILPSGEKSLEGFSITLEKVDRHQAGV 125
+Q V + + L + +L ++ L V G
Sbjct: 58 ----------WQGEGLGFVESDSYKESFGDFLGRA---SVANLAAPTLRLTHVHPQDGGR 104
Query: 126 YQCTATNGVG 135
Y C
Sbjct: 105 YWCQVAQWSI 114
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 64.0 bits (155), Expect = 4e-13
Identities = 21/103 (20%), Positives = 32/103 (31%), Gaps = 19/103 (18%)
Query: 1 MEQLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEG 60
+E+ + P I SP+N + V G I L C +G W S + + L
Sbjct: 201 LEENKPTRPVI-VSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGE 259
Query: 61 FSITLEKVD------------------RHQAGVYQCTATNGVG 85
++E R + C A N G
Sbjct: 260 DYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHG 302
Score = 55.9 bits (134), Expect = 3e-10
Identities = 28/145 (19%), Positives = 46/145 (31%), Gaps = 15/145 (10%)
Query: 4 LQMVPPSIRTSPSNGQLTVRKGGTITLEC------KASGNPVPSIIWSKKDSSLPSGEKS 57
++ P + + + + G L C K N +P + W K L
Sbjct: 97 VENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIH 156
Query: 58 LEGF--SITLEKVDRHQAGVYQCTATN---GVGDPVTVDMTLEVLCKILPSGEKSLEGFS 112
G + + V G Y C A+ G P+T + L + P+ + +
Sbjct: 157 FSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPAN 216
Query: 113 ITLEKVDRHQAGVYQCTATNGVGDP 137
T+E VD C T G
Sbjct: 217 ETME-VDLGSQIQLICNVT---GQL 237
Score = 51.3 bits (122), Expect = 1e-08
Identities = 22/173 (12%), Positives = 36/173 (20%), Gaps = 58/173 (33%)
Query: 20 LTVRKGGTITLECKASGNPVP-SIIWSKKDSSLPSGEKS-----LEGFSITLEKVDRHQA 73
L C + N +I W K DS P + + +
Sbjct: 15 LVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDS 74
Query: 74 GVYQCTATNGVGDPVTVDMTLEVL------------------------------------ 97
G Y C N + + ++ + +
Sbjct: 75 GHYYCVVRNSSYC-LRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKN 133
Query: 98 -------------CKILPSGEKSLEGF--SITLEKVDRHQAGVYQCTATNGVG 135
CK L G + + V G Y C A+
Sbjct: 134 ENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYL 186
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 63.2 bits (154), Expect = 9e-13
Identities = 25/101 (24%), Positives = 38/101 (37%), Gaps = 11/101 (10%)
Query: 2 EQLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGF 61
Q P I +P + L + +G L+C+ P+ S+ W + ++ S
Sbjct: 346 ASFQCSAPFIMDAPRD--LNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPRI 401
Query: 62 SI----TLE--KVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
S+ TL V GVY C TN G+ L V
Sbjct: 402 SVLNDGTLNFSHVLLSDTGVYTCMVTNVAGN-SNASAYLNV 441
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 61.2 bits (148), Expect = 1e-12
Identities = 19/98 (19%), Positives = 27/98 (27%), Gaps = 4/98 (4%)
Query: 21 TVRKGGTITLECKASGNPVP--SIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQC 78
G I L C + + W K L +L G + Q G Y C
Sbjct: 9 VEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKED--ALPGQKTEFKVDSDDQWGEYSC 66
Query: 79 TATNGVGDPVTVDMTLEVLCKILPSGEKSLEGFSITLE 116
+ + K + S E EG + L
Sbjct: 67 VFLPEPMGTANIQLHGPPRVKAVKSSEHINEGETAMLV 104
Score = 55.8 bits (134), Expect = 1e-10
Identities = 24/103 (23%), Positives = 37/103 (35%), Gaps = 16/103 (15%)
Query: 7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNP-VPSIIWSKKDSSL--PSGEKSLEGFSI 63
PP ++ S+ + +G T L CK+ P V W K S S F +
Sbjct: 82 GPPRVKAVKSS--EHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFV 139
Query: 64 ---------TLEKVDRHQ-AGVYQCTATNGVGDPVTVDMTLEV 96
+E ++ G Y+C T+ G +TL V
Sbjct: 140 SSSQGRSELHIENLNMEADPGQYRCNGTSSKGS-DQAIITLRV 181
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 62.5 bits (152), Expect = 2e-12
Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 10/96 (10%)
Query: 8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSI---- 63
P I P++ L V +G L+C+AS + S+ W + ++ + ++
Sbjct: 341 APVIVEPPAD--LNVTEGMAAELKCRAST-SLTSVSWITPNGTVMTHGAYKVRIAVLSDG 397
Query: 64 TLE--KVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97
TL V G+Y C +N VG+ T TL V
Sbjct: 398 TLNFTNVTVQDTGMYTCMVSNSVGN-TTASATLNVT 432
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 61.4 bits (148), Expect = 3e-12
Identities = 21/143 (14%), Positives = 45/143 (31%), Gaps = 9/143 (6%)
Query: 7 VPPSIRTSPSNGQLTVRKGGTIT---LECKASGNPVPSIIWSKKDSSLPSGEKSL-EGFS 62
S P + IT ++ + P+I W + + + EG +
Sbjct: 119 CFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEGMN 178
Query: 63 ITLEKVDRHQAGVYQCTAT---NGVGDPVTVDMTLEVLCKILPSGEKSLEG-FSITLEKV 118
++ G Y C T NG +T +T++V+ + + + +
Sbjct: 179 LSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEK 238
Query: 119 DRHQAGVYQCTATNG-VGDPVTV 140
+ + + CT + D
Sbjct: 239 EPGEELLIPCTVYFSFLMDSRNE 261
Score = 52.6 bits (125), Expect = 5e-09
Identities = 26/201 (12%), Positives = 45/201 (22%), Gaps = 72/201 (35%)
Query: 19 QLTVRKGGTITLEC-----------KASGNPVPSIIWSKKDSSLPSGEK----------S 57
Q+ V + ++C + + ++IW E S
Sbjct: 16 QIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRIS 75
Query: 58 LEGFSITLEKVDRHQAGVYQCTATNGVGD--------------------------PVTVD 91
E + + G Y C N
Sbjct: 76 KEKDVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEY 135
Query: 92 MTLEVLC----------------------KILPSGEKSLEGFSITLEKVDRHQAGVYQCT 129
+ C KI EG +++ G Y C
Sbjct: 136 GIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEGMNLSFLIALISNNGNYTCV 195
Query: 130 AT---NGVGDPVTVDMTLEVL 147
T NG +T +T++V+
Sbjct: 196 VTYPENGRTFHLTRTLTVKVV 216
Score = 48.3 bits (114), Expect = 1e-07
Identities = 14/104 (13%), Positives = 26/104 (25%), Gaps = 20/104 (19%)
Query: 2 EQLQMVPPSIRTSPSNGQLTVRKGGTITLECKA----SGNPVPSIIWSKKDSSL------ 51
VPP I + + G + + C + + W+
Sbjct: 218 SPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITID 277
Query: 52 ---------PSGEKSLEGFSITLEKVDR-HQAGVYQCTATNGVG 85
E ++++KV Y C A + G
Sbjct: 278 VTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKG 321
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo
sapiens}
Length = 97
Score = 57.7 bits (140), Expect = 4e-12
Identities = 17/83 (20%), Positives = 28/83 (33%), Gaps = 7/83 (8%)
Query: 20 LTVRKGGTITLECKASGNPVPS-IIWSKKDSSLPSGEK---SLEGFSITLE--KVDRHQA 73
+GG + CK + + W L + EK + E L + +
Sbjct: 11 AVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDD 70
Query: 74 GVYQCTATNGVGDPVTVDMTLEV 96
G Y+C N G+ + L V
Sbjct: 71 GTYRCKVVNDYGE-DSSYAELFV 92
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 61.2 bits (148), Expect = 4e-12
Identities = 27/192 (14%), Positives = 49/192 (25%), Gaps = 66/192 (34%)
Query: 21 TVRKGGTITLECK-------ASGNPVPSIIWSKKDSSLPSGEKS-----LEGFSITLEKV 68
+G + L C AS +P ++ W K DS+ + + ++ L
Sbjct: 29 FRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDGALWLLPA 88
Query: 69 DRHQAGVYQCTATNGVGDPVTVDMTLEVL------------------------------- 97
+ +G Y CT N + + L V
Sbjct: 89 LQEDSGTYVCTTRNASYC-DKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSE 147
Query: 98 ---------------CKILPSGEK----SLEGFSITLEKVDRHQAGVYQCTATNGVGD-- 136
+L + + + V AG Y+C T
Sbjct: 148 FTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQ 207
Query: 137 -PVTVDMTLEVL 147
+T + L +
Sbjct: 208 YNITRSIELRIK 219
Score = 58.9 bits (142), Expect = 3e-11
Identities = 19/143 (13%), Positives = 31/143 (21%), Gaps = 14/143 (9%)
Query: 7 VPPSIRTSPSNGQLTVRKGGTITLEC-----KASGNPVPSIIWSKKDSSLPSGEK----S 57
+ + + L C I W K L +
Sbjct: 117 ENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSV 176
Query: 58 LEGFSITLEKVDRHQAGVYQCTATNGVGD---PVTVDMTLEVLCKILPSGEKSLEGFSIT 114
+ + V AG Y+C T +T + L + K + +
Sbjct: 177 RGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTI 236
Query: 115 LEKVDRHQAGVYQCTATNGVGDP 137
C G G P
Sbjct: 237 --SASLGSRLTIPCKVFLGTGTP 257
Score = 52.0 bits (124), Expect = 6e-09
Identities = 15/117 (12%), Positives = 41/117 (35%), Gaps = 25/117 (21%)
Query: 2 EQLQMVPPSIRTSPSNGQLTVRKGGTITLECKA---SGNPVPSIIWSKKDSSLP------ 52
++ + P I + ++ G +T+ CK +G P+ +++W + +
Sbjct: 220 KKKEETIPVIISPLKT--ISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPG 277
Query: 53 ------------SGEKSLEGFSITLEKVDRHQAGV-YQCTATNGVGDPVTVDMTLEV 96
++ + + V R + ++C N + T+ T++
Sbjct: 278 GRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSF-QTLRTTVKE 333
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 61.0 bits (147), Expect = 5e-12
Identities = 21/186 (11%), Positives = 46/186 (24%), Gaps = 53/186 (28%)
Query: 2 EQLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPV---------PSIIWSKKDSSLP 52
+ + + PS G + +C + + + W K +
Sbjct: 22 KDSKWLNPSCMF-GGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRR 80
Query: 53 SGEKSLEGFSITLEKVDRHQAG-VYQCTATNGVGDPVTVDMTLEVL-------------- 97
+ ++ + + + + Y CT T GD V + +
Sbjct: 81 PLNRRVKNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGT 140
Query: 98 ---------CK------------------ILPSGEK-SLEGFSITLEKVDRHQAGVYQCT 129
C ++ G K S G ++ + + +G Y C
Sbjct: 141 HDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQNLIIHNPELEDSGRYDCY 200
Query: 130 ATNGVG 135
Sbjct: 201 VHYDDV 206
Score = 59.8 bits (144), Expect = 1e-11
Identities = 22/137 (16%), Positives = 39/137 (28%), Gaps = 9/137 (6%)
Query: 6 MVPPSIRTSPSNGQLTVRKGGTITLECK-ASGNPVPSIIWSKKDSSLPSGEK--SLEGFS 62
PPS L I L C +I W K + L S G +
Sbjct: 126 RKPPSCIPETYE--LGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQN 183
Query: 63 ITLEKVDRHQAGVYQCTATNGVG-DPVTVDMTLEVLCKILPSGEKSLEGFSITLEKVDRH 121
+ + + +G Y C + ++ + ++PS + + V
Sbjct: 184 LIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIG 243
Query: 122 QAGVYQCTATNGVGDPV 138
+ CTA +
Sbjct: 244 EPANITCTAV---STSL 257
Score = 51.0 bits (121), Expect = 1e-08
Identities = 17/111 (15%), Positives = 32/111 (28%), Gaps = 18/111 (16%)
Query: 3 QLQMVPPSIRTSP--SNGQLTVRKGGTITLECKASGNPVP----SIIWSKKDSSLPSGEK 56
L ++P + ++ V G + C A + I W + +
Sbjct: 219 ILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDF 278
Query: 57 SLEGF----------SITLEKVDRHQAG-VYQCTATNGVGDPVTVDMTLEV 96
+ ++ E V G Y C N D T+ T+ +
Sbjct: 279 GVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFD-KTLTTTVVL 328
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 57.8 bits (139), Expect = 5e-12
Identities = 20/103 (19%), Positives = 33/103 (32%), Gaps = 17/103 (16%)
Query: 9 PSIRTSPSNGQLTVRKGGTITLECKASGNPVP--SIIWSKKDSSLP-------------S 53
P I P + G ++ C A+ + + W + +L
Sbjct: 11 PQITVQPET--QSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQG 68
Query: 54 GEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
GE + L V+ G YQC +N G +V L +
Sbjct: 69 GELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 59.2 bits (143), Expect = 8e-12
Identities = 18/88 (20%), Positives = 33/88 (37%), Gaps = 7/88 (7%)
Query: 2 EQLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPS-IIWSKKDSSLPSGEK-SLE 59
E ++ P S V + L+CK + + I+W K + + EK +
Sbjct: 111 EWIRKQGPHFVEYLSW---EVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFK 167
Query: 60 GFSITLE--KVDRHQAGVYQCTATNGVG 85
TL + + AG+Y+ + G
Sbjct: 168 DGICTLLITEFSKKDAGIYEVILKDDRG 195
Score = 56.5 bits (136), Expect = 1e-10
Identities = 20/184 (10%), Positives = 45/184 (24%), Gaps = 68/184 (36%)
Query: 20 LTVRKGGTITLECKA-SGNPVPSIIWSKKDSSLPSGEK-------SLEGFSITLEKVDRH 71
+ + + G + +A + + + + + G K + + +EK+
Sbjct: 12 VEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDE 71
Query: 72 QAGVYQCTATNGVG----------------------------------------DPVTVD 91
G Y +G VT +
Sbjct: 72 DEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGE 131
Query: 92 MTLEVLCK------------------ILPSGEKSLEGFSITLE--KVDRHQAGVYQCTAT 131
+ + CK I + + TL + + AG+Y+
Sbjct: 132 CNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILK 191
Query: 132 NGVG 135
+ G
Sbjct: 192 DDRG 195
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 60.2 bits (145), Expect = 8e-12
Identities = 18/142 (12%), Positives = 36/142 (25%), Gaps = 16/142 (11%)
Query: 7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVP----SIIWSKKDSSLPSGEKSLEGFS 62
+ ++ + G TL +G+ + W+K D + +L
Sbjct: 1 MAFTVSIQSNK--RCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNTATL---- 54
Query: 63 ITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCKILPSGEKSLEGFSITLEKVDRHQ 122
T+ AG Y+ T + + L + F ++
Sbjct: 55 -TVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSS-----QT 108
Query: 123 AGVYQCTATNGVGDPVTVDMTL 144
T G + L
Sbjct: 109 DVELHATVKFSGGKTPADNYEL 130
Score = 42.5 bits (99), Expect = 1e-05
Identities = 19/141 (13%), Positives = 42/141 (29%), Gaps = 17/141 (12%)
Query: 5 QMVPPSIRTSPSNGQLTVRKGGTITLECK---ASGNPVPSII-----WSKKDSSLPSGEK 56
+ T P + V + L + G WSK + + + +
Sbjct: 89 EAELIVNITEPQH--FYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTTQ- 145
Query: 57 SLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCKILPSGEKSLEGFSITLE 116
IT+++ + GVY D + +++ + + +E ++ L
Sbjct: 146 -----DITIQEFTADKNGVYTVKVWGESED-SAASASTKIMLATMNVDQDVVESKTVALG 199
Query: 117 KVDRHQAGVYQCTATNGVGDP 137
V + + G P
Sbjct: 200 NEISLNYVVSEDIVGDSSGMP 220
Score = 35.6 bits (81), Expect = 0.003
Identities = 20/102 (19%), Positives = 32/102 (31%), Gaps = 23/102 (22%)
Query: 7 VPPSIRTSPSNGQLTVRKGGTITLECK--------ASGNPVPSIIWS---KKDSSLP--- 52
+ TV G I+L +SG P +I ++ +++ L
Sbjct: 181 LATMNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTL 240
Query: 53 ---SGEKSLEGFSIT------LEKVDRHQAGVYQCTATNGVG 85
++LEGFSIT E + C A
Sbjct: 241 IGSEVGEALEGFSITPDGHLFKESATYDDTAKFWCVAKLYQQ 282
Score = 31.0 bits (69), Expect = 0.13
Identities = 5/35 (14%), Positives = 11/35 (31%)
Query: 112 SITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 146
++T+ AG Y+ T + +
Sbjct: 53 TLTVADATSENAGSYKVTVQDTDTMTSVESEVFLM 87
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 57.4 bits (139), Expect = 9e-12
Identities = 13/79 (16%), Positives = 26/79 (32%), Gaps = 8/79 (10%)
Query: 8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK----SLEGFSI 63
I + + V++G + T C+ S + W + L + E + G
Sbjct: 13 RVHIIEDLED--VDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYH 70
Query: 64 TL--EKVDRHQAGVYQCTA 80
L ++ +G A
Sbjct: 71 VLTLRQLALKDSGTIYFEA 89
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 56.2 bits (136), Expect = 2e-11
Identities = 18/83 (21%), Positives = 26/83 (31%), Gaps = 8/83 (9%)
Query: 8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK---SLEGFSIT 64
P +I + V G + L C+ S P + W K ++ +K EG
Sbjct: 8 PAAIIKPLED--QWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEGTMAM 64
Query: 65 LE--KVDRHQAGVYQCTATNGVG 85
L AG Y C
Sbjct: 65 LVIRGASLKDAGEYTCEVEASKS 87
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor
tyrosine kinase, 3D-domain swapping, transferase; 1.90A
{Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 56.4 bits (136), Expect = 2e-11
Identities = 21/113 (18%), Positives = 34/113 (30%), Gaps = 15/113 (13%)
Query: 7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK---------S 57
PP + S +L + +E GNP P++ W L +
Sbjct: 7 YPPRV-VSLEEPELRL----EHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGE 61
Query: 58 LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCKILPSGEKSLEG 110
+ + K + G Y A N +G + L + P E S
Sbjct: 62 ISEGCLLFNKPTHYNNGNYTLIAKNPLGT-ANQTINGHFLKEPFPVDEVSPTP 113
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 56.3 bits (135), Expect = 3e-11
Identities = 21/103 (20%), Positives = 38/103 (36%), Gaps = 17/103 (16%)
Query: 9 PSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWS--------------KKDSSLPSG 54
+ SPS+ + + G + L C A I ++ +D SG
Sbjct: 8 YDVVLSPSH-GIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSG 66
Query: 55 EKSLEGFSI-TLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
+ + S T++ V R G+Y C A++G+ + V
Sbjct: 67 SEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMT-KKNSTFVRV 108
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell
adhesion protein, immunoglobulin fold, I-SET fold, cell
adhesion glycoprotein; 1.9A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1bqs_A*
Length = 210
Score = 56.4 bits (135), Expect = 8e-11
Identities = 15/78 (19%), Positives = 29/78 (37%), Gaps = 1/78 (1%)
Query: 9 PSIRTSPSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEKSLEGFSITLEK 67
++ P + V G + L C+ + + S+ W D+SL + + +T+
Sbjct: 6 KPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQSDTGRSVLTVRN 65
Query: 68 VDRHQAGVYQCTATNGVG 85
AG C + G
Sbjct: 66 ASLSAAGTRVCVGSCGGR 83
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 54.6 bits (131), Expect = 1e-10
Identities = 25/103 (24%), Positives = 38/103 (36%), Gaps = 18/103 (17%)
Query: 9 PSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSK--------------KDSSLPSG 54
S+ +TV +G T+TL+C S S+ W K+S
Sbjct: 2 GSLTNHTET--ITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLL 59
Query: 55 EKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97
S SIT+ V GVY+C + T ++ + VL
Sbjct: 60 HHSANQLSITVPNVTLQDEGVYKCLHYS--DSVSTKEVKVIVL 100
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 57.3 bits (138), Expect = 1e-10
Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 7/88 (7%)
Query: 2 EQLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVP-SIIWSKKDSSLPSGEK-SLE 59
E ++ P S V + L+CK + I+W K + + EK +
Sbjct: 216 EWIRKQGPHFVEYLSW---EVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFK 272
Query: 60 GFSITLE--KVDRHQAGVYQCTATNGVG 85
TL + + AG+Y+ + G
Sbjct: 273 DGICTLLITEFSKKDAGIYEVILKDDRG 300
Score = 56.2 bits (135), Expect = 2e-10
Identities = 18/105 (17%), Positives = 34/105 (32%), Gaps = 8/105 (7%)
Query: 7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK---SLEGFSI 63
+ P + N + ++ EC P WSK S + +G
Sbjct: 2 IDPFTKEVVVN--VDDDGVISLNFECDK-MTPKSEFSWSKDYVSTEDSPRLEVESKGNKT 58
Query: 64 TLE--KVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCKILPSGEK 106
+ + G+Y C T+ G + + E L ++L +
Sbjct: 59 KMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHE 103
Score = 51.5 bits (123), Expect = 9e-09
Identities = 22/197 (11%), Positives = 47/197 (23%), Gaps = 70/197 (35%)
Query: 7 VPPSIRTSPSNGQLTVRKGGTITLECKA-SGNPVPSIIWSKKDSSLPSGEK-------SL 58
P S + + + G + +A + + + + + G K +
Sbjct: 106 FPTVPVKSELA--VEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNT 163
Query: 59 EGFSITLEKVDRHQAGVYQCTATNGVG--------------------------------- 85
+ +EK+ G Y +G
Sbjct: 164 GIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGP 223
Query: 86 -------DPVTVDMTLEVLCK------------------ILPSGEKSLEGFSITLE--KV 118
VT + + + CK I + + TL +
Sbjct: 224 HFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEF 283
Query: 119 DRHQAGVYQCTATNGVG 135
+ AG+Y+ + G
Sbjct: 284 SKKDAGIYEVILKDDRG 300
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 55.7 bits (134), Expect = 1e-10
Identities = 11/61 (18%), Positives = 20/61 (32%), Gaps = 6/61 (9%)
Query: 25 GGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGV 84
TL C+ P + + L ++ + K + ++CTA N V
Sbjct: 115 CINTTLTCEVMNGTDPELNLYQDGKHLKLSQR------VITHKWTTSLSAKFKCTAGNKV 168
Query: 85 G 85
Sbjct: 169 S 169
Score = 49.9 bits (119), Expect = 2e-08
Identities = 18/169 (10%), Positives = 46/169 (27%), Gaps = 45/169 (26%)
Query: 12 RTSPSNGQLTVRKGGTITLECK--ASGNPVPSIIWSKKDSSLPSGE-------------- 55
+ + + G I L+ + + I W K +
Sbjct: 1 KEITNALETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTY 60
Query: 56 KSLEGFSITLEKVDRHQAGVYQCTATNGVG-DPVTVDMTLEVL----------------- 97
K + ++ ++ + +Y+ + + G + + L++
Sbjct: 61 KLFKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVSKPKISWTCINTTL 120
Query: 98 -CKI----------LPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVG 135
C++ G+ + K + ++CTA N V
Sbjct: 121 TCEVMNGTDPELNLYQDGKHLKLSQRVITHKWTTSLSAKFKCTAGNKVS 169
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 53.1 bits (128), Expect = 3e-10
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 8/80 (10%)
Query: 8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK---SLEGFSIT 64
P + + + L V +GG TL C S P + W ++ L G+K EG +
Sbjct: 8 PVRFQEALKD--LEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLE 64
Query: 65 L--EKVDRHQAGVYQCTATN 82
L + +G Y C+ +
Sbjct: 65 LVVRNLRPQDSGRYSCSFGD 84
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 55.6 bits (133), Expect = 3e-10
Identities = 18/87 (20%), Positives = 30/87 (34%), Gaps = 5/87 (5%)
Query: 7 VPPSIRTSPSNGQLTVRKGGTITLECKAS-GNPVPSIIWSKKDSSLPS--GEKSLEGFSI 63
P+ + G LT G ++TL C ++ W + + S + G +
Sbjct: 5 RCPAQEVAR--GVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRL 62
Query: 64 TLEKVDRHQAGVYQCTATNGVGDPVTV 90
L V H +G Y C V +
Sbjct: 63 LLRSVQLHDSGNYSCYRAGRPAGTVHL 89
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 52.4 bits (126), Expect = 5e-10
Identities = 13/83 (15%), Positives = 25/83 (30%), Gaps = 8/83 (9%)
Query: 8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK---SLEGF--S 62
+ ++ LTV+ +C+ S V W K + ++ S G
Sbjct: 8 QLEVLQDIAD--LTVKAAEQAVFKCEVSDEKVT-GKWYKNGVEVRPSKRITISHVGRFHK 64
Query: 63 ITLEKVDRHQAGVYQCTATNGVG 85
+ ++ V G Y
Sbjct: 65 LVIDDVRPEDEGDYTFVPDGYAL 87
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 55.2 bits (133), Expect = 5e-10
Identities = 16/88 (18%), Positives = 30/88 (34%), Gaps = 5/88 (5%)
Query: 13 TSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGF----SITLEKV 68
+ G T+T+ C + + S + + S + + +KV
Sbjct: 249 SEYKESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKV 308
Query: 69 DRHQAGVYQCTATNGVGDPVTVDMTLEV 96
GVY C A + T+ + L+V
Sbjct: 309 QVEDGGVYTCYAMGETFN-ETLSVELKV 335
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 54.4 bits (130), Expect = 6e-10
Identities = 18/104 (17%), Positives = 33/104 (31%), Gaps = 17/104 (16%)
Query: 8 PPSIRTSPSNGQLTVRKGGTITLECKASGNP--VPSIIWSKKDSSLPSGEKSLEGF---- 61
+ SPS+ + + G + L C A W S +
Sbjct: 104 IYDVVLSPSH-GIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQS 162
Query: 62 ---------SITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
++T++ V R G+Y C A++G+ + V
Sbjct: 163 GSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMT-KKNSTFVRV 205
Score = 35.2 bits (80), Expect = 0.003
Identities = 18/139 (12%), Positives = 35/139 (25%), Gaps = 46/139 (33%)
Query: 9 PSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKV 68
S+ +T K T+ + C S ++ + P +G I+ +
Sbjct: 8 ASVSDQHGVVYITENKNKTVVIPCLGS-ISNLNVSLCARY---PEKRFVPDGNRISWD-- 61
Query: 69 DRHQAGVYQCTATNGVGDPVTVDMTLEVLCKILPSGEKSLEGFSITLEKVDRHQAGVYQC 128
S +GF+I AG+ C
Sbjct: 62 --------------------------------------SKKGFTIP--SYMISYAGMVFC 81
Query: 129 TATNGVGDPVTVDMTLEVL 147
A ++ + V+
Sbjct: 82 EAKINDESYQSIMYIVVVV 100
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 51.2 bits (123), Expect = 1e-09
Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 8/80 (10%)
Query: 8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK---SLEGFSIT 64
+N L V + GT CK +P ++ W K L + K S EG ++
Sbjct: 8 ANCFTEELTN--LQVEEKGTAVFTCKTE-HPAATVTWRKGLLELRASGKHQPSQEGLTLR 64
Query: 65 LE--KVDRHQAGVYQCTATN 82
L +++ + Y C
Sbjct: 65 LTISALEKADSDTYTCDIGQ 84
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 51.2 bits (123), Expect = 2e-09
Identities = 18/80 (22%), Positives = 27/80 (33%), Gaps = 9/80 (11%)
Query: 8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK---SLEGFSIT 64
P +G T TL+C+ S V + W K +L G + +G
Sbjct: 8 PARFTQDLKT--KEASEGATATLQCELS--KVAPVEWKKGPETLRDGGRYSLKQDGTRCE 63
Query: 65 LE--KVDRHQAGVYQCTATN 82
L+ + AG Y C
Sbjct: 64 LQIHDLSVADAGEYSCMCGQ 83
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 51.5 bits (123), Expect = 2e-09
Identities = 20/109 (18%), Positives = 35/109 (32%), Gaps = 20/109 (18%)
Query: 20 LTVRKGGTITLECKASGNPV---PSIIWSKKD------------SSLPSGEKSLEGFSIT 64
TV+ G IT K + P+I W K + E+ ++
Sbjct: 17 GTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFE 76
Query: 65 LE--KVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCKILPSGEKSLEGF 111
++ K + AG Y+C T + LEV +++
Sbjct: 77 MQIIKAKDNFAGNYRCEVTYKDKF-DSCSFDLEVHES--TGTTPNIDSG 122
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 53.1 bits (127), Expect = 2e-09
Identities = 19/110 (17%), Positives = 40/110 (36%), Gaps = 9/110 (8%)
Query: 7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSG-------EKSLE 59
V + L C+A G P +IW+ D + SG ++ +
Sbjct: 113 VNAPYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEK 172
Query: 60 GFSITLE-KVDRHQAGVYQCTATNGVG-DPVTVDMTLEVLCKILPSGEKS 107
F++T +++ ++ CT + T ++ + L P E++
Sbjct: 173 LFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPELPLAHPPNERT 222
Score = 33.4 bits (76), Expect = 0.016
Identities = 30/191 (15%), Positives = 51/191 (26%), Gaps = 77/191 (40%)
Query: 20 LTVRKGGTITLECKASGNPVPS-----IIWSKKDS-----------------------SL 51
V G +T+ECK + W +D L
Sbjct: 11 YVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARL 70
Query: 52 PSGEKSLEGFSITLEKVDRHQAGVYQCTATNG-----------------------VGDPV 88
+ SL ++ + V AGVY+C + G V DPV
Sbjct: 71 LKDQLSLGNAALQITDVKLQDAGVYRCMISYGGADYKRITVKVNAPYNKINQRILVVDPV 130
Query: 89 TVDMTLEVLC-----------------KILPSGEK------SLEGFSITLE-KVDRHQAG 124
T + L C ++L + F++T +++
Sbjct: 131 TSEHELT--CQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNE 188
Query: 125 VYQCTATNGVG 135
++ CT
Sbjct: 189 IFYCTFRRLDP 199
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 50.4 bits (121), Expect = 2e-09
Identities = 15/82 (18%), Positives = 21/82 (25%), Gaps = 8/82 (9%)
Query: 6 MVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK---SLEG-- 60
M + + V G T E + S P W K L + +G
Sbjct: 3 MALIEVEKPLYG--VEVFVGETAHFEIELS-EPDVHGQWKLKGQPLAASPDCEIIEDGKK 59
Query: 61 FSITLEKVDRHQAGVYQCTATN 82
+ L G A N
Sbjct: 60 HILILHNCQLGMTGEVSFQAAN 81
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 50.5 bits (121), Expect = 3e-09
Identities = 12/84 (14%), Positives = 26/84 (30%), Gaps = 8/84 (9%)
Query: 8 PPSIRTSPSNGQLTVRKGGTITLECKAS-GNPVPSIIWSKKDSSLPSGEK---SLEGFSI 63
I + V +G + + EC S + +W+ ++ S + + +G
Sbjct: 8 HVGITKRLKT--MEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKY 65
Query: 64 TLE--KVDRHQAGVYQCTATNGVG 85
L + AG +
Sbjct: 66 ILVVREAAPSDAGEVVFSVRGLTS 89
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 53.1 bits (126), Expect = 4e-09
Identities = 30/219 (13%), Positives = 50/219 (22%), Gaps = 77/219 (35%)
Query: 5 QMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGE--------- 55
V S + G ++ + C + SI + +G
Sbjct: 326 LFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEG 385
Query: 56 ---------------KSLEGFSITLEKVDRHQAGVYQCTATNG----------------- 83
F++ L ++ AG Y C
Sbjct: 386 WVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPN 445
Query: 84 ----------VGDPVTVDMTLEVL---------------CKILPSGEKSLEG-------- 110
+G+ + V C+ LPS ++
Sbjct: 446 LKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDEN 505
Query: 111 ---FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 146
S+TL V R G Y C G T + + V
Sbjct: 506 SRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAV 544
Score = 50.4 bits (119), Expect = 3e-08
Identities = 20/136 (14%), Positives = 38/136 (27%), Gaps = 21/136 (15%)
Query: 2 EQLQMVPPSIRTSPSNGQLTVR------KGGTITLECKASGNPVPSIIWSKKDSSLPSGE 55
Q+ P + G +T C+ S ++ + P+ E
Sbjct: 217 LQVLKPEPELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFE 276
Query: 56 --------KSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL-------CKI 100
FS+ + + + AG Y C A + + L
Sbjct: 277 GRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPR 336
Query: 101 LPSGEKSLEGFSITLE 116
P+ K + G S+ +
Sbjct: 337 SPTVVKGVAGSSVAVL 352
Score = 42.7 bits (99), Expect = 1e-05
Identities = 23/148 (15%), Positives = 38/148 (25%), Gaps = 29/148 (19%)
Query: 19 QLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK---------------------- 56
TV G T+T+ C K L
Sbjct: 121 VYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGT 180
Query: 57 SLEGFSITLEKVDRHQAGVYQCTATNGVGDP-VTVDMTLEVLCKILPSGEKSLEGFSITL 115
FS+ + ++ AG Y C A + D+ + L + S+T
Sbjct: 181 GQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYED---LRGSVTF 237
Query: 116 E---KVDRHQAGVYQCTATNGVGDPVTV 140
+ + C ++G V V
Sbjct: 238 HCALGPEVANVAKFLCRQSSGENCDVVV 265
Score = 41.1 bits (95), Expect = 5e-05
Identities = 12/101 (11%), Positives = 30/101 (29%), Gaps = 26/101 (25%)
Query: 13 TSPSNGQLTVRKGGTITLECK---ASGNPVPSIIWSKKDSSL---------------PSG 54
P + +G ++++ C S N W ++ + +G
Sbjct: 5 FGPEE--VNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAG 62
Query: 55 EKSLE------GFSITLEKVDRHQAGVYQCTATNGVGDPVT 89
+L F + + ++ + +G Y+C
Sbjct: 63 RANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSF 103
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 50.0 bits (120), Expect = 4e-09
Identities = 14/85 (16%), Positives = 23/85 (27%), Gaps = 12/85 (14%)
Query: 8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSI---- 63
P I T + V G + + + S ++W K L + +
Sbjct: 8 PVLIVTPLED--QQVFVGDRVEMAVEVS-EEGAQVMWMKNGVELTREDSFKARYRFKKDG 64
Query: 64 -----TLEKVDRHQAGVYQCTATNG 83
V + G YQ G
Sbjct: 65 KRHILIFSDVVQEDRGRYQVITNGG 89
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding,
cell adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 49.3 bits (118), Expect = 6e-09
Identities = 15/80 (18%), Positives = 26/80 (32%), Gaps = 8/80 (10%)
Query: 8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK---SLEGFSIT 64
+ P + + V G E + + W + S + + K + EG T
Sbjct: 8 VSAFSKKPRS--VEVAAGSPAVFEAETER-AGVKVRWQRGGSDISASNKYGLATEGTRHT 64
Query: 65 LE--KVDRHQAGVYQCTATN 82
L +V G Y A +
Sbjct: 65 LTVREVGPADQGSYAVIAGS 84
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 49.7 bits (119), Expect = 6e-09
Identities = 17/81 (20%), Positives = 27/81 (33%), Gaps = 9/81 (11%)
Query: 7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK---SLEGFSI 63
+P N +G T L C+ S + W K +L G++ +G
Sbjct: 18 LPIKFTEGLRN--EEATEGATAVLRCELSKM--APVEWWKGHETLRDGDRHSLRQDGARC 73
Query: 64 TLE--KVDRHQAGVYQCTATN 82
L+ + AG Y C
Sbjct: 74 ELQIRGLVAEDAGEYLCMCGK 94
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 50.7 bits (121), Expect = 7e-09
Identities = 10/61 (16%), Positives = 18/61 (29%), Gaps = 6/61 (9%)
Query: 25 GGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGV 84
TL C+ + + L S + T+ + ++C A N V
Sbjct: 110 CSNATLTCEVLEGTDVELKLYQGKEHLRSLRQK------TMSYQWTNLRAPFKCKAVNRV 163
Query: 85 G 85
Sbjct: 164 S 164
Score = 44.2 bits (104), Expect = 2e-06
Identities = 18/155 (11%), Positives = 43/155 (27%), Gaps = 45/155 (29%)
Query: 25 GGTITLECK--ASGNPVPSIIWSKKDSSLPSGEKSLEGF------------SITLEKVDR 70
G I L + + + W + + + ++ ++ F + ++ + R
Sbjct: 11 GHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTR 70
Query: 71 HQAGVYQCTATNGVGDPVTVDMTLEVLCKILPS--------------------------- 103
+G Y T + G ++ L++ + S
Sbjct: 71 DDSGTYNVTVYSTNG-TRILNKALDLRILEMVSKPMIYWECSNATLTCEVLEGTDVELKL 129
Query: 104 ---GEKSLEGFSITLEKVDRHQAGVYQCTATNGVG 135
E T+ + ++C A N V
Sbjct: 130 YQGKEHLRSLRQKTMSYQWTNLRAPFKCKAVNRVS 164
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 49.3 bits (118), Expect = 7e-09
Identities = 15/80 (18%), Positives = 25/80 (31%), Gaps = 6/80 (7%)
Query: 8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK---SLEGFSIT 64
P I + LT + L C+ S P W K + E ++G
Sbjct: 8 PVHILSPQDKVSLTFTTSERVVLTCELSRVDFP-ATWYKDGQKVEESELLVVKMDGRKHR 66
Query: 65 LE--KVDRHQAGVYQCTATN 82
L + +G ++C
Sbjct: 67 LILPEAKVQDSGEFECRTEG 86
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 49.3 bits (118), Expect = 7e-09
Identities = 15/81 (18%), Positives = 26/81 (32%), Gaps = 9/81 (11%)
Query: 8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK---SLEG--FS 62
I T ++ TV G I L+C+ S N W+K + ++ +G
Sbjct: 7 GLKILTPLTD--QTVNLGKEICLKCEISENIPGK--WTKNGLPVQESDRLKVVQKGRIHK 62
Query: 63 ITLEKVDRHQAGVYQCTATNG 83
+ + G Y
Sbjct: 63 LVIANALTEDEGDYVFAPDAY 83
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 102
Score = 48.9 bits (117), Expect = 1e-08
Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 8/83 (9%)
Query: 5 QMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK---SLEGF 61
++V + + + G + TL C+ + + W K L S K G
Sbjct: 8 KVVFAKEQPAHRE--VQAEAGASATLSCEVA-QAQTEVTWYKDGKKLSSSSKVRVEAVGC 64
Query: 62 SITL--EKVDRHQAGVYQCTATN 82
+ L ++ + +AG Y C A
Sbjct: 65 TRRLVVQQAGQAEAGEYSCEAGG 87
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 48.6 bits (116), Expect = 1e-08
Identities = 13/81 (16%), Positives = 22/81 (27%), Gaps = 6/81 (7%)
Query: 7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK---SLEGFSI 63
V I + + + L C+ P + W+K + E
Sbjct: 10 VSSWIVYPSGKVYVAAVRLERVVLTCELC-RPWAEVRWTKDGEEVVESPALLLQKEDTVR 68
Query: 64 TLE--KVDRHQAGVYQCTATN 82
L V +G Y C +
Sbjct: 69 RLVLPAVQLEDSGEYLCEIDD 89
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 50.6 bits (120), Expect = 2e-08
Identities = 21/162 (12%), Positives = 38/162 (23%), Gaps = 41/162 (25%)
Query: 6 MVPPSIRTSPSNGQLTVRKGGTITLECK---ASGNPVPSIIWSKKDSSLP---------- 52
P + S L V G ++ + C V + W
Sbjct: 3 QGLPGLTVSSPQ--LRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYS 60
Query: 53 ---------------SGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97
G+ S+ L+ V + G+Y C V +
Sbjct: 61 NLSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWV 120
Query: 98 CKILPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVT 139
P + G + + +C+ + VT
Sbjct: 121 LPEEPRDLRVRVGDTTQM-----------RCSIQSTEEKRVT 151
Score = 44.5 bits (104), Expect = 3e-06
Identities = 23/138 (16%), Positives = 39/138 (28%), Gaps = 25/138 (18%)
Query: 13 TSPSNGQLTVRKGGTITLECKASGNPVPSII---WSKKDSSLPSGEKSLEGFSITLEKVD 69
L VR G T + C + W S E L + +
Sbjct: 121 LPEEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLS-YDSNMRSGK 179
Query: 70 RHQAGVYQCTATNGVGDPVTVDMTLEVLCKILPSGEKSLEGFSITLEKVDRHQAGVYQCT 129
G ++ ++ +G+ S SI L+ V G+Y C+
Sbjct: 180 FQSLGRFRN--------------------RVDLTGDISRNDGSIKLQTVKESDQGIYTCS 219
Query: 130 ATNGVGDPVTVDMTLEVL 147
G + + L V+
Sbjct: 220 IYVGKLE-SRKTIVLHVV 236
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 50.3 bits (119), Expect = 2e-08
Identities = 15/97 (15%), Positives = 33/97 (34%), Gaps = 8/97 (8%)
Query: 5 QMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK----SLEG 60
+ + ++++ G T+ L C P I+W D ++ E +
Sbjct: 109 DGNEEMGGITQTPYKVSIS-GTTVILTCPQ--YPGSEILWQHNDKNIGGDEDDKNIGSDE 165
Query: 61 FSITLEKVDR-HQAGVYQCTATNGVGDPVTVDMTLEV 96
++L++ Q+G Y C + + L
Sbjct: 166 DHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRA 202
Score = 48.0 bits (113), Expect = 1e-07
Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 5/68 (7%)
Query: 23 RKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATN 82
++ G++ L C +I W K + + + L + G+YQC +
Sbjct: 16 QEDGSVLLTC---DAEAKNITWFKDGKMIGFLTE--DKKKWNLGSNAKDPRGMYQCKGSQ 70
Query: 83 GVGDPVTV 90
P+ V
Sbjct: 71 NKSKPLQV 78
Score = 29.5 bits (65), Expect = 0.35
Identities = 8/39 (20%), Positives = 14/39 (35%)
Query: 102 PSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTV 140
G + + L + G+YQC + P+ V
Sbjct: 40 MIGFLTEDKKKWNLGSNAKDPRGMYQCKGSQNKSKPLQV 78
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens}
SCOP: b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 48.8 bits (116), Expect = 2e-08
Identities = 13/69 (18%), Positives = 19/69 (27%), Gaps = 12/69 (17%)
Query: 29 TLECKASGNPVPSIIWSKKDSSLPSGEK------------SLEGFSITLEKVDRHQAGVY 76
+ G P PS+ W S L ++ + L + G Y
Sbjct: 19 CIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNY 78
Query: 77 QCTATNGVG 85
A N G
Sbjct: 79 TLLAANPFG 87
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 49.5 bits (118), Expect = 2e-08
Identities = 10/64 (15%), Positives = 19/64 (29%), Gaps = 6/64 (9%)
Query: 22 VRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTAT 81
+ TL C+ + + L S + T+ + ++C A
Sbjct: 112 YWECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQK------TMSYQWTNLRAPFKCKAV 165
Query: 82 NGVG 85
N V
Sbjct: 166 NRVS 169
Score = 38.7 bits (90), Expect = 2e-04
Identities = 21/161 (13%), Positives = 44/161 (27%), Gaps = 45/161 (27%)
Query: 20 LTVRKGGTITLECKAS-GNPVPSIIWSKKDSSL-----PSGEKSLEG------------- 60
+ G +TL + W + P+G+K++
Sbjct: 9 VNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTN 68
Query: 61 FSITLEKVDRHQAGVYQCTATNG----------VGDPVTVDM------TLEVLCKILPSG 104
++ + V + G Y + V + V+ M + C++L
Sbjct: 69 GALRIYNVSKEDRGDYYMRMLHETEDQWKITMEVYEMVSKPMIYWECSNATLTCEVLEGT 128
Query: 105 EKSL----------EGFSITLEKVDRHQAGVYQCTATNGVG 135
+ L T+ + ++C A N V
Sbjct: 129 DVELKLYQGKEHLRSLRQKTMSYQWTNLRAPFKCKAVNRVS 169
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 49.7 bits (118), Expect = 3e-08
Identities = 14/88 (15%), Positives = 33/88 (37%), Gaps = 9/88 (10%)
Query: 3 QLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEG-- 60
+++ +R V G + L C+A G P+ + W ++ S+P+ +
Sbjct: 98 TVKVKASYMRIDTRIL--EVPGTGEVQLTCQARGYPLAEVSW--QNVSVPANTSHIRTPE 153
Query: 61 --FSITLE-KVDRHQAGVYQCTATNGVG 85
+ +T ++ + + C N
Sbjct: 154 GLYQVTSVLRLKPQPSRNFSCMFWNAHM 181
Score = 46.2 bits (109), Expect = 4e-07
Identities = 19/169 (11%), Positives = 42/169 (24%), Gaps = 54/169 (31%)
Query: 21 TVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEG--------------FSITLE 66
TV G +++LEC + + + SL+ +
Sbjct: 13 TVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIP 72
Query: 67 KVDRHQAGVYQCTATNGVG---------------------DPVTVDMTLEVLCKI----- 100
V +G Y+C G V +++ C+
Sbjct: 73 SVQVRDSGQYRCLVICGAAWDYKYLTVKVKASYMRIDTRILEVPGTGEVQLTCQARGYPL 132
Query: 101 ---------LPSGEKSLEG----FSITLE-KVDRHQAGVYQCTATNGVG 135
+P+ + + +T ++ + + C N
Sbjct: 133 AEVSWQNVSVPANTSHIRTPEGLYQVTSVLRLKPQPSRNFSCMFWNAHM 181
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 47.7 bits (113), Expect = 3e-08
Identities = 16/94 (17%), Positives = 29/94 (30%), Gaps = 18/94 (19%)
Query: 20 LTVRKGGTITLECKASGNPV---PSIIWSKKD------------SSLPSGEKSLEGFSIT 64
V GG+IT + +G + P + W K S +++ + +
Sbjct: 14 GEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFE 73
Query: 65 LE--KVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
L G Y+C + + L V
Sbjct: 74 LHITDAQPAFTGSYRCEVSTKDKF-DCSNFNLTV 106
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 50.2 bits (120), Expect = 4e-08
Identities = 17/71 (23%), Positives = 23/71 (32%), Gaps = 5/71 (7%)
Query: 20 LTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK---SLEGFSITLE--KVDRHQAG 74
V +G + C+ + P + W K D L K G L +V G
Sbjct: 492 TEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKG 551
Query: 75 VYQCTATNGVG 85
Y A N G
Sbjct: 552 EYTVRAKNSYG 562
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 47.0 bits (112), Expect = 5e-08
Identities = 13/80 (16%), Positives = 23/80 (28%), Gaps = 6/80 (7%)
Query: 8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK---SLEGFSIT 64
+ + V KGG + + + +P + W K + K +G
Sbjct: 6 SGAAFAKILDPAYQVDKGGRVRFVVELA-DPKLEVKWYKNGQEIRPSTKYIFEHKGCQRI 64
Query: 65 LE--KVDRHQAGVYQCTATN 82
L Y TA +
Sbjct: 65 LFINNCQMTDDSEYYVTAGD 84
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 46.6 bits (111), Expect = 8e-08
Identities = 17/83 (20%), Positives = 26/83 (31%), Gaps = 10/83 (12%)
Query: 8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK-----SLEGFS 62
+ + T G + LEC+ S ++ W K + G K +EG
Sbjct: 7 GIMVTKQLED--TTAYCGERVELECEVS-EDDANVKWFKNGEEIIPGPKSRYRIRVEGKK 63
Query: 63 ITLE--KVDRHQAGVYQCTATNG 83
L + A Y T G
Sbjct: 64 HILIIEGATKADAAEYSVMTTGG 86
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 46.4 bits (110), Expect = 9e-08
Identities = 23/104 (22%), Positives = 30/104 (28%), Gaps = 18/104 (17%)
Query: 8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSG------------- 54
N +TV +GGT L C+ N S+ WS
Sbjct: 6 SQGQFPLTQN--VTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIEL 63
Query: 55 -EKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97
S SI++ V G Y C+ T L VL
Sbjct: 64 VRASWHELSISVSDVSLSDEGQYTCSLFT--MPVKTSKAYLTVL 105
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 47.3 bits (112), Expect = 2e-07
Identities = 15/97 (15%), Positives = 31/97 (31%), Gaps = 7/97 (7%)
Query: 4 LQMVPPSIRTSPSNGQLTVRKGGTITLECKA-SGNPVPSIIWSKKDSSLPSGEKSLEGFS 62
+ ++ QL + L C + S W ++L S +
Sbjct: 103 RILRQLRNIQVTNHSQLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLSSQPNL----T 158
Query: 63 ITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCK 99
++ Y C A N V ++ ++ + LC+
Sbjct: 159 VSW-DPRISSEQDYTCIAENAVS-NLSFSVSAQKLCE 193
Score = 35.7 bits (82), Expect = 0.002
Identities = 20/182 (10%), Positives = 40/182 (21%), Gaps = 60/182 (32%)
Query: 19 QLTVRKGGTITLECKAS-GNPVPSIIWSKKDSSLP--------------------SGEKS 57
+ G ++TL + G V I W ++SL
Sbjct: 7 MVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNF 66
Query: 58 LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLC----KILPSGEKSLEGF-S 112
+ +S+ L + G Y+ + ++ + ++ +
Sbjct: 67 TQSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCE 126
Query: 113 ITLE-------------------------------KVDRHQAGVYQCTATNGVG---DPV 138
+ L Y C A N V V
Sbjct: 127 LHLTCSVEDADDNVSFRWEALGNTLSSQPNLTVSWDPRISSEQDYTCIAENAVSNLSFSV 186
Query: 139 TV 140
+
Sbjct: 187 SA 188
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain
C2; IG domain, structural protein; NMR {Homo sapiens}
SCOP: b.1.1.4
Length = 104
Score = 45.1 bits (107), Expect = 3e-07
Identities = 16/81 (19%), Positives = 24/81 (29%), Gaps = 8/81 (9%)
Query: 8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSL-PSGEK---SLEGFSI 63
+ + V KG I L + + + + W K + SG K G
Sbjct: 15 STAFQKKLEPAY-QVSKGHKIRLTVELA-DHDAEVKWLKNGQEIQMSGSKYIFESIGAKR 72
Query: 64 TLE--KVDRHQAGVYQCTATN 82
TL + YQC
Sbjct: 73 TLTISQCSLADDAAYQCVVGG 93
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 43.8 bits (103), Expect = 2e-06
Identities = 10/61 (16%), Positives = 18/61 (29%), Gaps = 6/61 (9%)
Query: 25 GGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGV 84
TL C+ + + L S + T+ + ++C A N V
Sbjct: 105 CSNATLTCEVLEGTDVELKLYQGKEHLRSLRQK------TMSYQWTNLRAPFKCKAVNRV 158
Query: 85 G 85
Sbjct: 159 S 159
Score = 41.8 bits (98), Expect = 1e-05
Identities = 25/157 (15%), Positives = 44/157 (28%), Gaps = 41/157 (26%)
Query: 19 QLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKS---------------LEGFSI 63
Q+ G +T S P+ ++W K+ + E S S+
Sbjct: 4 QIYGVVYGNVTFHV-PSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSL 62
Query: 64 TLEKVDRHQAGVYQCTATNGVG---------DPVTV--------DMTL--EVLCKILPS- 103
T+ + Y+ + N + V+ + TL EVL
Sbjct: 63 TIYNLTSSDEDEYEMESPNITDTMKFFLYVLEMVSKPMIYWECSNATLTCEVLEGTDVEL 122
Query: 104 -----GEKSLEGFSITLEKVDRHQAGVYQCTATNGVG 135
E T+ + ++C A N V
Sbjct: 123 KLYQGKEHLRSLRQKTMSYQWTNLRAPFKCKAVNRVS 159
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor,
immune system, IG domain, cytotoxicity, C2-type IG-like
domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 188
Score = 44.0 bits (104), Expect = 3e-06
Identities = 15/96 (15%), Positives = 26/96 (27%), Gaps = 17/96 (17%)
Query: 8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEG------F 61
P I P V K +T+ C+ + + S F
Sbjct: 4 KPFIWAEPHFM---VPKEKQVTICCQGN-YGAVEYQLHFEGSLFAVDRPKPPERINKVKF 59
Query: 62 SITLEKVDRHQAGVYQCTATNGVG-----DPVTVDM 92
I ++ AG Y C G + + + +
Sbjct: 60 YIP--DMNSRMAGQYSCIYRVGELWSEPSNLLDLVV 93
Score = 35.6 bits (82), Expect = 0.002
Identities = 16/92 (17%), Positives = 28/92 (30%), Gaps = 9/92 (9%)
Query: 8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEK 67
P++ P V G +T C+ ++ + SS L
Sbjct: 99 TPTLSVHPGP---EVISGEKVTFYCRLDTATSMFLLLKEGRSSHVQRGYGKVQAEFPLGP 155
Query: 68 VDRHQAGVYQCTATNGVG------DPVTVDMT 93
V G Y+C + +PV + +T
Sbjct: 156 VTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVT 187
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold,
natural killer cell receptor, immune SY; HET: NAG; 1.80A
{Homo sapiens} PDB: 1im9_D
Length = 316
Score = 43.7 bits (103), Expect = 6e-06
Identities = 24/121 (19%), Positives = 40/121 (33%), Gaps = 19/121 (15%)
Query: 8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEG---FSIT 64
P + PS V +GG +TL C + + K+D F+++
Sbjct: 24 KPFLSAWPSA---VVPRGGHVTLRCHYRH-RFNNFMLYKEDRIHIPIFHGRIFQESFNMS 79
Query: 65 LEKVDRHQAGVYQCTATNGVG--------DPVTVDMTLEVLCKILPSGEKSL--EGFSIT 114
V AG Y C ++ +PV + +T L + L G +
Sbjct: 80 --PVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPLVKSGERVI 137
Query: 115 L 115
L
Sbjct: 138 L 138
Score = 40.2 bits (94), Expect = 9e-05
Identities = 24/124 (19%), Positives = 41/124 (33%), Gaps = 20/124 (16%)
Query: 8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPS----GEKSLEGFSI 63
PS+ P V+ G + L+C + K+ S G+
Sbjct: 119 KPSLLAHPGP---LVKSGERVILQCWSDIMFE-HFFLHKEGISKDPSRLVGQIHDGVSKA 174
Query: 64 --TLEKVDRHQAGVYQCTATNGVG--------DPVTVDMTLEVLCKILPS--GEKSLEGF 111
++ + AG Y+C + DP+ + +T L + G K G
Sbjct: 175 NFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPGPKVQAGE 234
Query: 112 SITL 115
S+TL
Sbjct: 235 SVTL 238
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A*
1ow0_C*
Length = 218
Score = 42.9 bits (101), Expect = 7e-06
Identities = 24/123 (19%), Positives = 45/123 (36%), Gaps = 21/123 (17%)
Query: 8 PPSIRTSPSNGQLTVRKGGTITLECKAS-GNPVPSIIWSKKDSSLPSGEKSLEG------ 60
P I S + G++ ++C+A + ++ K + G +
Sbjct: 9 MPFISAKSSPV---IPLDGSVKIQCQAIREAYLTQLMIIKNSTYREIGRRLKFWNETDPE 65
Query: 61 FSITLEKVDRHQAGVYQCTATNGVG-----DPVTVDMTLEVLCK---ILPSGEKSLEGFS 112
F I +D ++AG YQC G D + + +T + K G + G +
Sbjct: 66 FVID--HMDANKAGRYQCQYRIGHYRFRYSDTLELVVT-GLYGKPFLSADRGLVLMPGEN 122
Query: 113 ITL 115
I+L
Sbjct: 123 ISL 125
Score = 41.8 bits (98), Expect = 2e-05
Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 4/76 (5%)
Query: 8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKD-SSLPSGEKSLEGFSITLE 66
P + + G I+L C ++ P +K+ SLP + + +L
Sbjct: 106 KPFLSADRGL---VLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQHQSGEHPANFSLG 162
Query: 67 KVDRHQAGVYQCTATN 82
VD + +G+Y+C
Sbjct: 163 PVDLNVSGIYRCYGWY 178
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A
{Homo sapiens}
Length = 184
Score = 42.1 bits (99), Expect = 1e-05
Identities = 27/115 (23%), Positives = 39/115 (33%), Gaps = 16/115 (13%)
Query: 8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEK 67
PS++ PS+ V +TL C+ V K SS + I
Sbjct: 8 KPSLQALPSSL---VPLEKPVTLRCQGPP-GVDLYRLEKLSSSRYQDQAV---LFIP--A 58
Query: 68 VDRHQAGVYQCTATNGVG-----DPVTVDMTLEVLCKIL--PSGEKSLEGFSITL 115
+ R AG Y+C+ NG D + + T L G G +TL
Sbjct: 59 MKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQPGPAVSSGGDVTL 113
Score = 39.0 bits (91), Expect = 1e-04
Identities = 20/97 (20%), Positives = 32/97 (32%), Gaps = 17/97 (17%)
Query: 8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEG---FSIT 64
PS+ P V GG +TL+C + K+ P F I
Sbjct: 94 KPSLSAQPGP---AVSSGGDVTLQC-QTRYGFDQFALYKEGDPAPYKNPERWYRASFPII 149
Query: 65 LEKVDRHQAGVYQCTATNGVG--------DPVTVDMT 93
V +G Y+C + + DP+ + +T
Sbjct: 150 --TVTAAHSGTYRCYSFSSRDPYLWSAPSDPLELVVT 184
Score = 25.9 bits (57), Expect = 4.3
Identities = 16/69 (23%), Positives = 24/69 (34%), Gaps = 13/69 (18%)
Query: 85 GDPVT------VDMTLEVLCKILPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVG--- 135
PVT + L L K+ S + I + R AG Y+C+ NG
Sbjct: 22 EKPVTLRCQGPPGVDLYRLEKLSSSRYQDQAVLFIP--AMKRSLAGRYRCSYQNGSLWSL 79
Query: 136 --DPVTVDM 142
D + +
Sbjct: 80 PSDQLELVA 88
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5
isoform 1; immunoglobulin-like fold, immune system;
1.85A {Homo sapiens}
Length = 196
Score = 42.2 bits (99), Expect = 1e-05
Identities = 18/96 (18%), Positives = 37/96 (38%), Gaps = 17/96 (17%)
Query: 8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEG------F 61
++ P + + +G ++T+ C+ + K+ S P ++ F
Sbjct: 5 KATLWAEPGSV---ISRGNSVTIRCQGT-LEAQEYRLVKEGSPEPWDTQNPLEPKNKARF 60
Query: 62 SITLEKVDRHQAGVYQCTATNGVG-----DPVTVDM 92
SI + H AG Y+C + G DP+ + +
Sbjct: 61 SIP--SMTEHHAGRYRCYYYSPAGWSEPSDPLELVV 94
Score = 34.8 bits (80), Expect = 0.004
Identities = 15/103 (14%), Positives = 33/103 (32%), Gaps = 23/103 (22%)
Query: 8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPS----GEKSLEG--- 60
P++ PS V G +TL+C + I +++ S + + G
Sbjct: 100 KPTLSALPSP---VVTSGENVTLQCGSRLRFD-RFILTEEGDHKLSWTLDSQLTPSGQFQ 155
Query: 61 --FSITLEKVDRHQAGVYQCTATNGVG--------DPVTVDMT 93
F + V + +C + D + + ++
Sbjct: 156 ALFPVG--PVTPSHRWMLRCYGSRRHILQVWSEPSDLLEIPVS 196
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 41.1 bits (96), Expect = 1e-05
Identities = 24/99 (24%), Positives = 37/99 (37%), Gaps = 17/99 (17%)
Query: 16 SNGQLTVRKGGTITLECKASGNP--VPSIIWSKKDSSLP-----SGEKSLEGF------- 61
+ G ++ KGG+I L+C S V + W ++D L G F
Sbjct: 9 TTGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPG 68
Query: 62 ---SITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97
+TL+ + + G Y C T + LEVL
Sbjct: 69 PGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVL 107
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 42.4 bits (99), Expect = 1e-05
Identities = 13/101 (12%), Positives = 28/101 (27%), Gaps = 12/101 (11%)
Query: 7 VPPSIRTSPSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEKSLEG----F 61
P + ++ + C ++G P I W +P +
Sbjct: 115 AKPQN--TAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPQTSQVPGFLSGTV 172
Query: 62 SIT----LEKVDRHQAGVYQCTATN-GVGDPVTVDMTLEVL 97
++T L + C + P + ++L V
Sbjct: 173 TVTSLWILVPSSQVDGKQVTCKVEHESFEKPQLLTVSLTVY 213
Score = 34.7 bits (79), Expect = 0.005
Identities = 24/143 (16%), Positives = 41/143 (28%), Gaps = 35/143 (24%)
Query: 19 QLTVRKGGTITLECKASGNPVP-----SIIWSKKDSSLP--------------------- 52
Q+ G ++TL C + + W++ S
Sbjct: 8 QVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFV 67
Query: 53 --SGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCKILPSGEKSLEG 110
L S+ + + G Y C +VD+ L VL K + + E
Sbjct: 68 AARLGAELRDASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRVLAK----PQNTAEV 123
Query: 111 FSITLEKVDRHQAGVYQCTATNG 133
+ L A +C +T G
Sbjct: 124 QKVQLTGEPVPMA---RCVSTGG 143
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 42.8 bits (100), Expect = 1e-05
Identities = 20/106 (18%), Positives = 33/106 (31%), Gaps = 12/106 (11%)
Query: 19 QLTVRKGGTITLECKASGNPVPSIIWSK----------KDSSLPSGEKSLEGFSITLEKV 68
+ V G T +C A G V K+ + S + + F++
Sbjct: 173 NVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVV--NT 230
Query: 69 DRHQAGVYQCTATNGVGDPVTVDMTLEVLCKILPSGEKSLEGFSIT 114
+ AG Y+C G ++ L V +P L T
Sbjct: 231 TKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQLASVGAT 276
Score = 39.4 bits (91), Expect = 2e-04
Identities = 9/69 (13%), Positives = 24/69 (34%), Gaps = 4/69 (5%)
Query: 25 GGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGV 84
G + + K + P+ + IW+ + ++ + + + V T+G
Sbjct: 91 PGLLNVYVKVNNGPLGNPIWNISGDPTRTWNRA----ELAISTFWPNFYQVIFEVITSGH 146
Query: 85 GDPVTVDMT 93
+ +D
Sbjct: 147 QGYLAIDEV 155
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 105
Score = 40.5 bits (94), Expect = 2e-05
Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 7/75 (9%)
Query: 25 GGTITLECKASGNPVPSIIWSKKDSSLPSGEKS----LEGFSITLEKVDR-HQAGVYQCT 79
G T+ L C P I+W D ++ E + ++L++ Q+G Y C
Sbjct: 21 GTTVILTCPQ--YPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCY 78
Query: 80 ATNGVGDPVTVDMTL 94
+ + L
Sbjct: 79 PRGSKPEDANFYLYL 93
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet,
C2-SET immunoglobulin superfamily, H-bonded G strand
PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4
b.1.1.4 PDB: 1xmw_A
Length = 186
Score = 41.8 bits (97), Expect = 2e-05
Identities = 15/70 (21%), Positives = 24/70 (34%), Gaps = 5/70 (7%)
Query: 21 TVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTA 80
R G++ L C + I W K S + + + L + G YQC
Sbjct: 118 GSRGDGSVLLTCGLTDKT---IKWLKDGSIISPLNAT--KNTWNLGNNAKDPRGTYQCQG 172
Query: 81 TNGVGDPVTV 90
+P+ V
Sbjct: 173 AKETSNPLQV 182
Score = 36.4 bits (83), Expect = 0.001
Identities = 11/60 (18%), Positives = 19/60 (31%), Gaps = 7/60 (11%)
Query: 25 GGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDR-HQAGVYQCTATNG 83
G ++ L C + ++ W K LP + L+ +G Y C
Sbjct: 14 GTSVELTCPLDSDE--NLKWEKNGQELPQKHDK----HLVLQDFSEVEDSGYYVCYTPAS 67
Score = 28.7 bits (63), Expect = 0.64
Identities = 7/39 (17%), Positives = 12/39 (30%)
Query: 102 PSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTV 140
+ + L + G YQC +P+ V
Sbjct: 144 IISPLNATKNTWNLGNNAKDPRGTYQCQGAKETSNPLQV 182
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG,
inhibitory receptor, disulfide, immune system; 1.70A
{Homo sapiens}
Length = 196
Score = 41.7 bits (98), Expect = 2e-05
Identities = 20/96 (20%), Positives = 38/96 (39%), Gaps = 17/96 (17%)
Query: 8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEG------F 61
P++ P + + G ++T+ C+ + K++S P ++ F
Sbjct: 5 KPTLWAEPGSV---ISWGNSVTIWCQGT-LEAREYRLDKEESPAPWDRQNPLEPKNKARF 60
Query: 62 SITLEKVDRHQAGVYQCTATNGVG-----DPVTVDM 92
SI + AG Y+C + VG DP+ + M
Sbjct: 61 SIP--SMTEDYAGRYRCYYRSPVGWSQPSDPLELVM 94
>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN;
1.82A {Gallus gallus}
Length = 105
Score = 40.1 bits (94), Expect = 3e-05
Identities = 22/79 (27%), Positives = 28/79 (35%), Gaps = 11/79 (13%)
Query: 5 QMVP-PSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEG--- 60
Q +P PS+ PS V G T+TL C + + EK E
Sbjct: 1 QQLPQPSLSLHPSQ---GVSLGDTVTLRCH-LPRMAAWVQLWLNGTLRFDKEKDKEQDAA 56
Query: 61 -FSITLEKVDRHQAGVYQC 78
FS + AG YQC
Sbjct: 57 EFSFA--VTNLEDAGTYQC 73
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural
cytotoxicity receptor, NK cell receptor, immunoglobulin
fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4
Length = 242
Score = 41.4 bits (97), Expect = 3e-05
Identities = 18/90 (20%), Positives = 26/90 (28%), Gaps = 13/90 (14%)
Query: 3 QLQMVP-PSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEG- 60
Q Q +P P I P V K +T+ C+ + + S
Sbjct: 1 QQQTLPKPFIWAEPHFM---VPKEKQVTICCQGN-YGAVEYQLHFEGSLFAVDRPKPPER 56
Query: 61 -----FSITLEKVDRHQAGVYQCTATNGVG 85
F I ++ AG Y C G
Sbjct: 57 INKVKFYIP--DMNSRMAGQYSCIYRVGEL 84
Score = 37.6 bits (87), Expect = 5e-04
Identities = 16/98 (16%), Positives = 30/98 (30%), Gaps = 15/98 (15%)
Query: 8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEG---FSIT 64
P++ P V G +T C + K+ S + F +
Sbjct: 102 TPTLSVHPGP---EVISGEKVTFYC-RLDTATSMFLLLKEGRSSHVQRGYGKVQAEFPLG 157
Query: 65 LEKVDRHQAGVYQCTATNGVG------DPVTVDMTLEV 96
V G Y+C + +PV + +T ++
Sbjct: 158 --PVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVTGDI 193
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG
superfamily, rossmann fold, metal mediated protein
interf immune system; HET: NAG; 3.30A {Homo sapiens}
SCOP: b.1.1.3 b.1.1.4
Length = 291
Score = 41.4 bits (96), Expect = 3e-05
Identities = 21/112 (18%), Positives = 39/112 (34%), Gaps = 12/112 (10%)
Query: 11 IRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFS-ITLEKVD 69
SPS + + +GG++ + C S + + ++ LP E L G + E +
Sbjct: 2 TSVSPSK--VILPRGGSVLVTCSTSCDQPKLLGI---ETPLPKKELLLPGNNRKVYELSN 56
Query: 70 RHQAGVYQCTATNGVGDPVTVDMTLEVLC-----KILPSGEKSLEGFSITLE 116
+ C + T L V ++ P G ++TL
Sbjct: 57 VQEDSQPMCYSNCP-DGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLR 107
Score = 32.9 bits (74), Expect = 0.025
Identities = 12/87 (13%), Positives = 20/87 (22%), Gaps = 11/87 (12%)
Query: 7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSI--IWSKKDSSLPSGEKSLEGFSIT 64
P SP + T+ C G S + + + S +
Sbjct: 189 ATPPQLVSPR----VLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFS 244
Query: 65 LE---KVDRHQAGVYQ--CTATNGVGD 86
+ V G + C G
Sbjct: 245 AKASVSVTAEDEGTQRLTCAVILGNQS 271
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like
folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A
2dyp_D 2otp_A 3q2c_A
Length = 198
Score = 41.0 bits (96), Expect = 3e-05
Identities = 18/123 (14%), Positives = 37/123 (30%), Gaps = 22/123 (17%)
Query: 8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEG------F 61
P++ P + + +G +TL C+ ++ + P + + F
Sbjct: 5 KPTLWAEPGSV---ITQGSPVTLRCQGG-QETQEYRLYREKKTAPWITRIPQELVKKGQF 60
Query: 62 SITLEKVDRHQAGVYQCTATNGVG------DPVTVDMTLEVLCK---ILPSGEKSLEGFS 112
I + G Y+C + DP+ + K G +
Sbjct: 61 PIP--SITWEHTGRYRCYYGSDTAGRSESSDPLE-LVVTGAYIKPTLSAQPSPVVNSGGN 117
Query: 113 ITL 115
+TL
Sbjct: 118 VTL 120
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein
binding; HET: NAG NDG; 2.40A {Homo sapiens}
Length = 590
Score = 41.2 bits (95), Expect = 5e-05
Identities = 13/88 (14%), Positives = 24/88 (27%), Gaps = 4/88 (4%)
Query: 5 QMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGE--KSLEGFS 62
+ P ++++ L C + W K++ S E
Sbjct: 495 KECPNPKPDKAPLQKVSLAPNSRYYLSCPMESRH-ATYSWRHKENVEQSCEPGHQSPNCI 553
Query: 63 ITLEKVDRHQAGVYQCTAT-NGVGDPVT 89
+ +E + Q G Y C A
Sbjct: 554 LFIENLTAQQYGHYFCEAQEGSYFREAQ 581
Score = 27.3 bits (59), Expect = 2.2
Identities = 6/29 (20%), Positives = 9/29 (31%), Gaps = 1/29 (3%)
Query: 112 SITLEKVDRHQAGVYQCTAT-NGVGDPVT 139
+ +E + Q G Y C A
Sbjct: 553 ILFIENLTAQQYGHYFCEAQEGSYFREAQ 581
>3kgr_A LAIR-1, hlair1, leukocyte-associated immunoglobulin-like receptor;
IG-like domain, cell membrane, glycoprotein; 1.80A {Homo
sapiens} PDB: 3rp1_A
Length = 106
Score = 38.9 bits (91), Expect = 6e-05
Identities = 17/102 (16%), Positives = 26/102 (25%), Gaps = 24/102 (23%)
Query: 8 PPSIRTSPSNGQLTVRKGGTITLECKAS-----------GNPVPSIIWSKKDSSLPSGEK 56
PSI P + G +T C+ + +S E
Sbjct: 9 RPSISAEPGTV---IPLGSHVTFVCRGPVGVQTFRLERESRSTYNDTEDVSQASPSESEA 65
Query: 57 SLEGFSITLEKVDRHQAGVYQCTATNGVG-----DPVTVDMT 93
F I V AG Y+C D + + +
Sbjct: 66 R---FRID--SVSEGNAGPYRCIYYKPPKWSEQSDYLELLVK 102
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 40.2 bits (93), Expect = 7e-05
Identities = 23/153 (15%), Positives = 36/153 (23%), Gaps = 38/153 (24%)
Query: 7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNP-VPSIIWSKKD----------------- 48
VPP + V +G ++ L+C +G + W D
Sbjct: 6 VPPLV---------EVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSE 56
Query: 49 --------SSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCKI 100
+ + L + Y C G L V K
Sbjct: 57 LQVTMHDTRGRSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAK- 115
Query: 101 LPSGEKSLEGFSITLEKVDRHQAGVYQCTATNG 133
P + D Q + C + NG
Sbjct: 116 -PEATEVSPNKGTLSVMEDSAQE-IATCNSRNG 146
Score = 35.2 bits (80), Expect = 0.004
Identities = 19/79 (24%), Positives = 29/79 (36%), Gaps = 4/79 (5%)
Query: 6 MVPPS-IRTSPSNGQLTV-RKGGTITLECKAS-GNPVPSIIWSKKDSSLPSGEKSLEGFS 62
P SP+ G L+V C + GNP P I W + L +
Sbjct: 113 FAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGY 172
Query: 63 ITLEKVDRHQAGVYQCTAT 81
+T + R +G+ T+T
Sbjct: 173 MT-SRTVREASGLLSLTST 190
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 39.4 bits (91), Expect = 9e-05
Identities = 20/107 (18%), Positives = 32/107 (29%), Gaps = 16/107 (14%)
Query: 5 QMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPS----------- 53
+ + P TV GGT+ L+C+ + S+ WS
Sbjct: 33 DINLSQDDSQPWTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNR 92
Query: 54 ---GEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97
+ SI++ V G Y C+ T + VL
Sbjct: 93 IQLVTSTPHELSISISNVALADEGEYTCSIFT--MPVRTAKSLVTVL 137
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain,
integrin, allosteric mobility, cell adhesi immune
system; HET: NAG; 2.10A {Homo sapiens}
Length = 196
Score = 38.9 bits (90), Expect = 2e-04
Identities = 17/116 (14%), Positives = 32/116 (27%), Gaps = 14/116 (12%)
Query: 8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIW--SKKDSSLPSGEKSLEGFSITL 65
P P V +GG++ L C + S + + G + L + L
Sbjct: 2 PFWADLQPRV--AFVERGGSLWLNCSTNCPRPERGGLETSLRRNGTQRGLRWL---ARQL 56
Query: 66 EKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLC-----KILPSGEKSLEGFSITLE 116
+ R C + + +++P G + TL
Sbjct: 57 VDI-REPETQPVCFFRCA-RRTLQARGLIRTFQRPDRVELMPLPPWQPVGENFTLS 110
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.6 bits (92), Expect = 2e-04
Identities = 31/166 (18%), Positives = 55/166 (33%), Gaps = 53/166 (31%)
Query: 2 EQLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEG- 60
+ L P +R+ G T G +T A S W +S S K++
Sbjct: 254 KLLGFTPGELRSYLK-G-ATGHSQGLVTAVAIAET---DS--W---ESFFVSVRKAITVL 303
Query: 61 FSITLEKVDRHQA--------GVYQCTATNGVGDP-----VT------VDMTLEVLCKIL 101
F I + ++A + + + N G P ++ V + L
Sbjct: 304 FFIGVR---CYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHL 360
Query: 102 PSGEK-------------------SLEGFSITLEKVDRHQAGVYQC 128
P+G++ SL G ++TL K + +G+ Q
Sbjct: 361 PAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKA-KAPSGLDQS 405
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell
membrane, disulfide bond, glycoprotein, immunoglobulin
domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC;
3.60A {Homo sapiens}
Length = 589
Score = 38.8 bits (90), Expect = 3e-04
Identities = 14/101 (13%), Positives = 29/101 (28%), Gaps = 12/101 (11%)
Query: 6 MVPPSIRTSPSNGQLTVRKGGTITLEC-------KASGNPVPSIIWSKKDSSLPSGEKS- 57
++ P SP + V+ T C I+W ++P + +
Sbjct: 1 LLDPCGYISPES--PVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTI 58
Query: 58 --LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
S+T + + T G + +T+
Sbjct: 59 INRTASSVTFTDIASLNIQLTCNILTFGQLEQNVYGITIIS 99
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 38.3 bits (88), Expect = 3e-04
Identities = 15/95 (15%), Positives = 22/95 (23%), Gaps = 6/95 (6%)
Query: 7 VPPSIRTSPSNGQLTVRKGGTITLECKAS----GNPVPSIIWSKKDSSLPSGEKSLEGFS 62
V I + + G L C P + W+ S E +
Sbjct: 120 VTALIEKPDIHFLEPLESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDPETTRSS-E 178
Query: 63 ITLEKVDRHQAGVYQCTATN-GVGDPVTVDMTLEV 96
+TL C G + L V
Sbjct: 179 LTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQLNV 213
Score = 25.6 bits (55), Expect = 6.9
Identities = 19/159 (11%), Positives = 35/159 (22%), Gaps = 46/159 (28%)
Query: 34 ASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNG---------- 83
A+ NP + + G+ + S+++ G Y G
Sbjct: 55 ATNNPDRRVKPETQGRFRLLGDVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQN 114
Query: 84 ----------------------VGDPVTVDMTLEVLCK-------------ILPSGEKSL 108
G P + +L C+ + P ++
Sbjct: 115 KLNLEVTALIEKPDIHFLEPLESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDPETT 174
Query: 109 EGFSITLEKVDRHQAGVYQCTATN-GVGDPVTVDMTLEV 146
+TL C G + L V
Sbjct: 175 RSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQLNV 213
>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold,
cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A
{Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Length = 192
Score = 37.8 bits (87), Expect = 4e-04
Identities = 18/111 (16%), Positives = 33/111 (29%), Gaps = 11/111 (9%)
Query: 11 IRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDR 70
+ P L V G++ + C + N ++SL + +
Sbjct: 5 VHVRPKK--LAVEPKGSLEVNCSTTCNQPEVGGL---ETSLNKILLDEQAQWKHYLVSNI 59
Query: 71 HQAGVYQCTATNGVGDPVTVDMTLEVL-----CKILPSGEKSLEGFSITLE 116
V QC T G +++ + V + G S T+E
Sbjct: 60 SHDTVLQCHFTCS-GKQESMNSNVSVYQPPRQVILTLQPTLVAVGKSFTIE 109
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 37.7 bits (87), Expect = 4e-04
Identities = 11/89 (12%), Positives = 30/89 (33%), Gaps = 8/89 (8%)
Query: 3 QLQMVPPSIRTSPSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEKSLEG- 60
++ + + +PS + + C SG P P + W + L + ++
Sbjct: 99 EVTLSVKADFPTPSISDFEIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQD 158
Query: 61 -----FSITLE-KVDRHQAGVYQCTATNG 83
++++ + + + C G
Sbjct: 159 PETELYAVSSKLDFNMTTNHSFMCLIKYG 187
Score = 34.2 bits (78), Expect = 0.007
Identities = 21/135 (15%), Positives = 40/135 (29%), Gaps = 24/135 (17%)
Query: 19 QLTVRKGGTITLECKASGNP----VPSIIWSKKDS---SLPSGEKSLEG----------- 60
+T TL C + + I W K+ ++ SG+ ++
Sbjct: 3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDIT 62
Query: 61 --FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCKILPSGEKSLEGFSITLEKV 118
SI + + G Y+C D + EV + SI+ ++
Sbjct: 63 NNLSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPT----PSISDFEI 118
Query: 119 DRHQAGVYQCTATNG 133
C+ + G
Sbjct: 119 PTSNIRRIICSTSGG 133
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI
domain, IG-like domain, extracellular receptor,
neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4
b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Length = 663
Score = 37.8 bits (86), Expect = 7e-04
Identities = 15/76 (19%), Positives = 28/76 (36%), Gaps = 5/76 (6%)
Query: 26 GTITLECKASGNPVPSIIWSKKDSSLPSGEKS---LEGFSITLEKVDRHQAGVYQCTAT- 81
GT L+C N + W ++ L + + ++ + + +GVYQC +
Sbjct: 549 GTAELKCSQKSNL-ARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEE 607
Query: 82 NGVGDPVTVDMTLEVL 97
V + VL
Sbjct: 608 RVKNKTVFQVVAKHVL 623
Score = 27.8 bits (60), Expect = 1.4
Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 115 LEKVDRHQAGVYQCTAT-NGVGDPVTVDMTLEVL 147
+ + +GVYQC + V + VL
Sbjct: 590 IFNLSEGDSGVYQCLSEERVKNKTVFQVVAKHVL 623
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 37.4 bits (86), Expect = 7e-04
Identities = 19/92 (20%), Positives = 37/92 (40%), Gaps = 8/92 (8%)
Query: 2 EQLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGN-PVPSIIWSK-KDSSLPSGEKSLE 59
+ L + + S + + K G I LEC+++G P P I WS K ++P+ E +
Sbjct: 110 KALVELKVAALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVV 169
Query: 60 G-----FSITLE-KVDRHQAGVYQCTATNGVG 85
+++ + CT + +
Sbjct: 170 ADGVGLYAVAASVIMRGSSGEGVSCTIRSSLL 201
Score = 30.8 bits (69), Expect = 0.11
Identities = 14/113 (12%), Positives = 26/113 (23%), Gaps = 35/113 (30%)
Query: 2 EQLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNP---VPSIIWSKKDSSLP-----S 53
Q ++ PS G + G L C + W
Sbjct: 3 LQFSVLGPS-------GPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYAD 55
Query: 54 GEKSLEG--------------------FSITLEKVDRHQAGVYQCTATNGVGD 86
G++ + ++ + V +G Y C +G
Sbjct: 56 GKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVTASDSGKYLCYFQDGDFY 108
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell,
HLA, major histocompatibility complex class I (MHC class
I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 257
Score = 36.9 bits (85), Expect = 0.001
Identities = 22/124 (17%), Positives = 42/124 (33%), Gaps = 20/124 (16%)
Query: 8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLE------GF 61
PS+ P V+ T+ L+C + + ++ + E
Sbjct: 7 KPSLLAHPGPL---VKSEETVILQCWSDV-RFQHFLLHREGKFKDTLHLIGEHHDGVSKA 62
Query: 62 SITLEKVDRHQAGVYQCTATNGVG--------DPVTVDMTLEVLCKIL--PSGEKSLEGF 111
+ ++ + + AG Y+C + DP+ + +T L G L G
Sbjct: 63 NFSIGPMMQDLAGTYRCYGSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPGPTVLAGE 122
Query: 112 SITL 115
S+TL
Sbjct: 123 SVTL 126
>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus
receptor, cell adhesion, integrin ligand, glycopr LFA-1
ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo
sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A
1d3e_I 1d3i_I 3tcx_A
Length = 185
Score = 36.2 bits (83), Expect = 0.002
Identities = 21/112 (18%), Positives = 39/112 (34%), Gaps = 12/112 (10%)
Query: 11 IRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFS-ITLEKVD 69
SPS ++ + +GG++ + C S + + ++ LP E L G + E +
Sbjct: 2 TSVSPS--KVILPRGGSVLVTCSTSCDQPKLLGI---ETPLPKKELLLPGNNRKVYELSN 56
Query: 70 RHQAGVYQCTATNGVGDPVTVDMTLEVLC-----KILPSGEKSLEGFSITLE 116
+ C + T L V ++ P G +TL
Sbjct: 57 VQEDSQPMCYSNCP-DGQSTAKTFLTVYWTPERVELAPLPSWQPVGKQLTLR 107
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells,
immunological receptors, immunoglobulin fold; 1.70A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D
2dli_A 2dl2_A 3h8n_A
Length = 201
Score = 36.0 bits (83), Expect = 0.002
Identities = 13/100 (13%), Positives = 34/100 (34%), Gaps = 18/100 (18%)
Query: 8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK------SLEGF 61
PS+ P V+ T+ L+C + + ++ + +
Sbjct: 8 KPSLLAHPGPL---VKSEETVILQCWSD-VMFEHFLLHREGMFNDTLRLIGEHHDGVSKA 63
Query: 62 SITLEKVDRHQAGVYQCTATNGVG--------DPVTVDMT 93
+ ++ ++ + AG Y+C + DP+ + +
Sbjct: 64 NFSISRMTQDLAGTYRCYGSVTHSPYQVSAPSDPLDIVII 103
>3dmm_C T-cell surface glycoprotein CD8 alpha chain; T cell CO-receptor
CD8AB MHC complex, immune response, membrane, MHC I,
phosphoprotein, transmembrane; 2.60A {Mus musculus}
Length = 166
Score = 35.8 bits (82), Expect = 0.002
Identities = 8/36 (22%), Positives = 13/36 (36%), Gaps = 2/36 (5%)
Query: 9 PSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIW 44
P +R P + G + L C+ G+ W
Sbjct: 10 PELRIFPKK--MDAELGQKVDLVCEVLGSVSQGCSW 43
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 34.8 bits (79), Expect = 0.002
Identities = 12/83 (14%), Positives = 24/83 (28%), Gaps = 17/83 (20%)
Query: 20 LTVRKGGTITLECKASGNPV---PSIIWSK--------------KDSSLPSGEKSLEGFS 62
++V G + K +G + P+I W K + ++
Sbjct: 22 VSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVE 81
Query: 63 ITLEKVDRHQAGVYQCTATNGVG 85
+ + KV G Y+
Sbjct: 82 LHIGKVVLGDRGYYRLEVKAKDT 104
>1nez_G T-cell surface glycoprotein CD8 alpha chain; immune system; HET:
NAG; 2.10A {Synthetic} SCOP: b.1.1.1 PDB: 1bqh_G*
3b9k_A* 2atp_A* 2arj_R
Length = 128
Score = 34.1 bits (78), Expect = 0.004
Identities = 19/118 (16%), Positives = 30/118 (25%), Gaps = 38/118 (32%)
Query: 9 PSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIW------------------------ 44
P +R P + G + L C+ G+ W
Sbjct: 5 PELRIFPKK--MDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNK 62
Query: 45 SKKDSSLPSGEKSLEG------FSITLEKVDRHQAGVYQCTATN------GVGDPVTV 90
D L S + + +TL K + G Y C+ + PV
Sbjct: 63 ITWDEKLNSSKLFSAMRDTNNKYVLTLNKFSKENEGYYFCSVISNSVMYFSSVVPVLQ 120
>2frg_P TREM-like transcript-1; immunoglobulin-like, beta-sandwich, cell
surface receptor, triggering receptor, platelet
receptor, ITIM, immune system; 1.19A {Homo sapiens}
Length = 106
Score = 33.7 bits (77), Expect = 0.005
Identities = 15/98 (15%), Positives = 31/98 (31%), Gaps = 20/98 (20%)
Query: 20 LTVRKGGTITLEC--------------KASGNPVPSIIWSKKDSSLPSGEKSLEG----- 60
L G +I ++C + ++ S D P+G ++
Sbjct: 7 LQAPVGSSILVQCHYRLQDVKAQKVWCRFLPEGCQPLVSSAVDRRAPAGRRTFLTDLGGG 66
Query: 61 -FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97
+ + + AG Y C G + ++L +L
Sbjct: 67 LLQVEMVTLQEEDAGEYGCMVDGARGPQILHRVSLNIL 104
Score = 30.6 bits (69), Expect = 0.068
Identities = 7/37 (18%), Positives = 14/37 (37%)
Query: 111 FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 147
+ + + AG Y C G + ++L +L
Sbjct: 68 LQVEMVTLQEEDAGEYGCMVDGARGPQILHRVSLNIL 104
>4esk_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like receptor;
IG-like domain, domain swapping, collagen receptor,
structural genomics; 1.76A {Mus musculus}
Length = 102
Score = 33.1 bits (76), Expect = 0.007
Identities = 16/98 (16%), Positives = 30/98 (30%), Gaps = 16/98 (16%)
Query: 9 PSIRTSPSNGQLTVRKGGTITLECKASGNPVPSII--WSKKDSSLPSGEKSLEG----FS 62
+I + S + +G +T+ C S + K S+ F
Sbjct: 10 ITIFPNSSLM---ISQGTFVTVVCSYSDKHDLYNMVRLEKDGSTFMEKSTEPYKTEDEFE 66
Query: 63 ITLEKVDRHQAGVYQCTATNGVG-----DPVTVDMTLE 95
I V+ G Y C + G+ + + + E
Sbjct: 67 IG--PVNETITGHYSCIYSKGITWSERSKTLELKVIKE 102
Score = 24.6 bits (54), Expect = 9.5
Identities = 8/40 (20%), Positives = 14/40 (35%), Gaps = 7/40 (17%)
Query: 111 FSITLEKVDRHQAGVYQCTATNGVG-----DPVTVDMTLE 145
F I V+ G Y C + G+ + + + E
Sbjct: 65 FEIG--PVNETITGHYSCIYSKGITWSERSKTLELKVIKE 102
>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold,
diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A
Length = 238
Score = 34.0 bits (78), Expect = 0.010
Identities = 18/98 (18%), Positives = 28/98 (28%), Gaps = 23/98 (23%)
Query: 13 TSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKD------------SSLPSGE----- 55
SP + LTV +G T L C + W ++ S E
Sbjct: 132 QSPQS--LTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFT 189
Query: 56 ----KSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVT 89
K + S+ + + Y C A + V
Sbjct: 190 IFFNKREKKLSLHIADSQPGDSATYFCAAIDTNAYKVI 227
Score = 27.4 bits (61), Expect = 1.8
Identities = 6/20 (30%), Positives = 8/20 (40%)
Query: 18 GQLTVRKGGTITLECKASGN 37
GG +TL C + N
Sbjct: 8 RNKVAVTGGKVTLSCNQTNN 27
>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D,
mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo
sapiens}
Length = 253
Score = 33.3 bits (76), Expect = 0.015
Identities = 24/150 (16%), Positives = 41/150 (27%), Gaps = 27/150 (18%)
Query: 18 GQLTVRKGGTITLECKASGNPVPSIIW-------------------SKKDSSLP---SGE 55
V +G + L C + P + W K+ SLP
Sbjct: 9 RWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLA 68
Query: 56 KSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDM-----TLEVLCKILPSGEKSLEG 110
+ + L+ + Q CT++ L VL + +
Sbjct: 69 TRVTDTELRLQVANMSQGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAV 128
Query: 111 FSITLEKVDRHQAGVYQCTATNGVGDPVTV 140
F + ++ Q C AT D V +
Sbjct: 129 FEPSEAEISHTQKATLVCLATGFYPDHVEL 158
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 32.2 bits (73), Expect = 0.020
Identities = 16/97 (16%), Positives = 27/97 (27%), Gaps = 18/97 (18%)
Query: 19 QLTVRKGGTITLECKAS-GNPVPSIIWSK---------KDSSLPSGEKSLEG-------- 60
+TV G +TL S + W E +G
Sbjct: 13 HMTVVSGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQS 72
Query: 61 FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97
++ + KV + Y G+ + L+VL
Sbjct: 73 GALYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQVL 109
>1q8m_A Triggering receptor expressed on myeloid cells 1; V-type IG-like
domain, immunoglobulin-like, immune system receptor;
HET: GSH; 2.60A {Homo sapiens} SCOP: b.1.1.1
Length = 127
Score = 32.1 bits (73), Expect = 0.024
Identities = 10/104 (9%), Positives = 30/104 (28%), Gaps = 26/104 (25%)
Query: 19 QLTVRKGGTITLECKASGNPVPS--------------IIWSKKDSSLPSGEKSLEG---- 60
+ +++G T+ ++C + S + + + G
Sbjct: 13 KYELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIIL 72
Query: 61 --------FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
+ + + +G+YQC +P + + +
Sbjct: 73 EDYHDHGLLRVRMVNLQVEDSGLYQCVIYQPPKEPHMLFDRIRL 116
>1smo_A Triggering receptor expressed on myeloid cells 1; activating
receptors, TREM-1, innate immune system receptor,
system; HET: TLA; 1.47A {Homo sapiens} SCOP: b.1.1.1
Length = 119
Score = 32.1 bits (73), Expect = 0.025
Identities = 13/112 (11%), Positives = 33/112 (29%), Gaps = 28/112 (25%)
Query: 13 TSPSNGQLTVRKGGTITLECKASGNPVPS--------------IIWSKKDSSLPSGEKSL 58
T + + +++G T+ ++C + S + + +
Sbjct: 2 TKLTEEKYELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQ 61
Query: 59 EG------------FSITLEKVDRHQAGVYQCTATNGVGDPVTV--DMTLEV 96
G + + + +G+YQC +P + + L V
Sbjct: 62 VGRIILEDYHDHGLLRVRMVNLQVEDSGLYQCVIYQPPKEPHMLFDRIRLVV 113
>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding
homology region (CHR), cell MEMB disease mutation,
glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo
sapiens}
Length = 483
Score = 32.9 bits (74), Expect = 0.027
Identities = 11/83 (13%), Positives = 23/83 (27%), Gaps = 5/83 (6%)
Query: 8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEK 67
+ P + + G IT C + + ++I + E +I +
Sbjct: 198 DSQTKVFPQD--KVILVGSDITFCCVSQEKVLSALIGHTNCPLI---HLDGENVAIKIRN 252
Query: 68 VDRHQAGVYQCTATNGVGDPVTV 90
+ + T TV
Sbjct: 253 ISVSASSGTNVVFTTEDNIFGTV 275
>2eys_A NKT15; natural killer T cell receptor, immune system; 2.21A {Homo
sapiens} PDB: 2eyr_A 2eyt_A 3huj_E* 3tyf_A 3tzv_A*
3sdx_E* 2po6_C* 2cde_A 3to4_C*
Length = 210
Score = 32.3 bits (73), Expect = 0.032
Identities = 15/89 (16%), Positives = 32/89 (35%), Gaps = 21/89 (23%)
Query: 18 GQLTVRKGGTITLECKASGNPVPSIIWSKKDS----------SLPSGEKSLEGFSITLEK 67
L + +G TL+C + +P ++ W K+D+ + KS ++ TL+
Sbjct: 11 QSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDA 70
Query: 68 VDRH-----------QAGVYQCTATNGVG 85
+ + Y C ++
Sbjct: 71 DTKQSSLHITASQLSDSASYICVVSDRGS 99
>3nfj_J T cell receptor beta chain; immunoglobulin family, immune system;
2.68A {Homo sapiens} PDB: 3hg1_E
Length = 245
Score = 32.5 bits (74), Expect = 0.034
Identities = 27/157 (17%), Positives = 46/157 (29%), Gaps = 33/157 (21%)
Query: 13 TSPSNGQLTVRKGGTITLECKASGNPVPS--------------IIWSKKDSSLPSGEKSL 58
P+ L G ++LEC G P+ + +S + S
Sbjct: 6 QWPAT--LVQPVGSPLSLECTVEGTSNPNLYWYRQAAGRGLQLLFYSVGIGQISSEVPQ- 62
Query: 59 EGFSI----------TLEKVDRHQAGVYQCTATNGVGDPVTVDM-----TLEVLCKILPS 103
S + +K+ +G Y C + VG V L V+ +
Sbjct: 63 -NLSASRPQDRQFILSSKKLLLSDSGFYLCAWSVSVGAGVPTIYFGEGSWLTVVEDLNKV 121
Query: 104 GEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTV 140
+ F + ++ Q C AT D V +
Sbjct: 122 FPPEVAVFEPSEAEISHTQKATLVCLATGFFPDHVEL 158
>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin
domain, microsome, protein disulfide isomerase,
thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo
sapiens}
Length = 401
Score = 32.7 bits (73), Expect = 0.035
Identities = 11/78 (14%), Positives = 20/78 (25%), Gaps = 5/78 (6%)
Query: 7 VPPSIRTSPSNGQLTVRKGGTITLECKASG---NPVPSIIWSKKDSSLPSGEKSLEGFSI 63
PP + P+ L C S + + W + +K+
Sbjct: 290 KPPKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQ--R 347
Query: 64 TLEKVDRHQAGVYQCTAT 81
L + H G +
Sbjct: 348 WLSALRHHSDGSVSLSGH 365
>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC,
antigen recognition, TCR-PMHC, membrane receptor system;
2.75A {Mus musculus}
Length = 256
Score = 32.4 bits (74), Expect = 0.036
Identities = 25/126 (19%), Positives = 38/126 (30%), Gaps = 31/126 (24%)
Query: 18 GQLTVRKGGTITLECKASGNPVPSIIWSKKD-----------SSLPSGEKSLEGFSITLE 66
++TV +G ++ L CK S + P + W + S + + GF
Sbjct: 11 ARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFS 70
Query: 67 KVDRH-----------QAGVYQCTATN---------GVGDPVTVDMTLEVLCKILPSGEK 106
K D + VY C + G G +TV G
Sbjct: 71 KSDSSFHLRKASVHRSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGG 130
Query: 107 SLEGFS 112
S G S
Sbjct: 131 SGGGGS 136
Score = 30.5 bits (69), Expect = 0.18
Identities = 17/108 (15%), Positives = 29/108 (26%), Gaps = 29/108 (26%)
Query: 16 SNGQLTVRKGGTITLECKASGN--------------PVPSIIWSKKDSSLPSGE------ 55
S G +TL C+ + + +
Sbjct: 143 SPRNKVTVTGENVTLSCRQTNSHNYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKA 202
Query: 56 --KSLEGFSITLEKVDRHQAGVYQCTATNGVGDPV----TVDMTLEVL 97
+ E F +TLE Q +Y C +++ G + L VL
Sbjct: 203 TRTTQEDFFLTLESASPSQTSLYFCASSDAPGQLYFGEGS---KLTVL 247
>1xt5_A Variable region-containing chitin-binding protein 3; innate
immunity, VCBP, primordial antigen receptor, florida
lancelet, amphioxus; 1.15A {Branchiostoma floridae}
Length = 135
Score = 31.7 bits (71), Expect = 0.041
Identities = 22/120 (18%), Positives = 40/120 (33%), Gaps = 19/120 (15%)
Query: 17 NGQLTVRKGGTITLECKASGNP---VPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQA 73
+ ++ V GGT+ L C P I W K S S + ++ E + ++
Sbjct: 11 HTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVES 70
Query: 74 GVYQCTATNGVGDPVTVDMTLEVLCKILPSGEKSLEGFSITLEKVDRHQAGVYQCTATNG 133
Y+ + + +G +V +L ++ L V G Y C
Sbjct: 71 DSYKESFGDFLGR-ASVA---------------NLAAPTLRLTHVHPQDGGRYWCQVAQW 114
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1;
signal regulatory protein alpha, immunoglobulin
superfamily, phosphoprotein; HET: NAG; 2.49A {Homo
sapiens}
Length = 327
Score = 32.2 bits (73), Expect = 0.044
Identities = 19/97 (19%), Positives = 37/97 (38%), Gaps = 27/97 (27%)
Query: 2 EQLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGN-------------PVPSIIWSKKD 48
E+LQ++ + ++V G + L C + P +I+++K+
Sbjct: 2 EELQVI-----QPDKS--VSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKE 54
Query: 49 SSLP-------SGEKSLEGFSITLEKVDRHQAGVYQC 78
P S ++ FSI++ + AG Y C
Sbjct: 55 GHFPRVTTVSESTKRENMDFSISISNITPADAGTYYC 91
>4ety_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like receptor;
IG-like domain, extra celluar domain, domain swappin
nysgrc, structural genomics; 1.90A {Mus musculus}
Length = 118
Score = 31.2 bits (71), Expect = 0.045
Identities = 16/100 (16%), Positives = 31/100 (31%), Gaps = 16/100 (16%)
Query: 9 PSIRTSPSNGQLTVRKGGTITLECKASGNPVPSII--WSKKDSSLPSGEKSLEG----FS 62
+I + S + +G +T+ C S + K S+ F
Sbjct: 10 ITIFPNSSLM---ISQGTFVTVVCSYSDKHDLYNMVRLEKDGSTFMEKSTEPYKTEDEFE 66
Query: 63 ITLEKVDRHQAGVYQCTATNGVG-----DPVTVDMTLEVL 97
I V+ G Y C + G+ + + + E +
Sbjct: 67 IG--PVNETITGHYSCIYSKGITWSERSKTLELKVIKENV 104
>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain,
human constant...; natural killer T cell receptor,
immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B
4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B
3qjh_B 3qiw_D* 3qiu_D
Length = 245
Score = 31.9 bits (72), Expect = 0.046
Identities = 24/155 (15%), Positives = 41/155 (26%), Gaps = 30/155 (19%)
Query: 13 TSPSNGQLTVRKGGTITLECKASGNPVPSIIW----------------SKKDSSLPSGEK 56
PS+ + G +TL C N W + K K
Sbjct: 7 QIPSH--QIIDMGQMVTLNCDPVSN-HLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFK 63
Query: 57 --------SLEGFSITLEKVDRHQAGVYQCTATNGVG---DPVTVDMTLEVLCKILPSGE 105
F++ ++ + VY C ++ L VL +
Sbjct: 64 DQFSVERPDGSYFTLKIQPTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFP 123
Query: 106 KSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTV 140
+ F + ++ Q C AT D V +
Sbjct: 124 PEVAVFEPSEAEISHTQKATLVCLATGFYPDHVEL 158
>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF,
protein-protein complex, IMM system; HET: NAG FUL; 2.80A
{Homo sapiens} SCOP: b.1.1.1
Length = 120
Score = 31.3 bits (70), Expect = 0.048
Identities = 17/91 (18%), Positives = 30/91 (32%), Gaps = 11/91 (12%)
Query: 17 NGQLTVRKGGTITLECKAS-GNPVPSIIWSK--KDSSLPSGEKSLEG--------FSITL 65
+ ++ G LEC P + W K + + ++ F +
Sbjct: 18 QSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHF 77
Query: 66 EKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
E V + G Y+C+A + TL V
Sbjct: 78 EPVLPNDNGSYRCSANFQSNLIESHSTTLYV 108
>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor,
IG-like domain, immune system; 1.00A {Mus musculus} PDB:
2icc_A 2ice_S* 2icf_S*
Length = 119
Score = 31.1 bits (70), Expect = 0.063
Identities = 15/106 (14%), Positives = 30/106 (28%), Gaps = 28/106 (26%)
Query: 19 QLTVRKGGTITLECK---ASGNPVPSIIWSKKDSSLP--------SGEKSLEG------- 60
+T G + ++C G + W + S +G+ +
Sbjct: 10 SVTGTWKGDVKIQCIYDPLRGYRQVLVKWLVRHGSDSVTIFLRDSTGDHIQQAKYRGRLK 69
Query: 61 --------FSITLEKVDRHQAGVYQCTATNGV--GDPVTVDMTLEV 96
S+ + + Y C T G+ V D +E+
Sbjct: 70 VSHKVPGDVSLQINTLQMDDRNHYTCEVTWQTPDGNQVIRDKIIEL 115
>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex,
immunoglobulin fold, immune receptor, membr immune
system; HET: NAG; 2.55A {Homo sapiens}
Length = 268
Score = 31.6 bits (71), Expect = 0.068
Identities = 28/152 (18%), Positives = 48/152 (31%), Gaps = 28/152 (18%)
Query: 14 SPSNGQLTVRKGGTITLECKASGNPVPSIIW-------------------SKKDSSLPS- 53
+PSN KG + L C ++ W + DS LP+
Sbjct: 32 TPSN--KVTEKGKYVELRCDPISG-HTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPND 88
Query: 54 ----GEKSLEGFSITLEKVDRHQAGVYQC-TATNGVGDPVTVDMTLEVLCKILPSGEKSL 108
++ +++ +R + VY C T+ G L VL + +
Sbjct: 89 RFFAVRPEGSVSTLKIQRTERGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEV 148
Query: 109 EGFSITLEKVDRHQAGVYQCTATNGVGDPVTV 140
F + ++ Q C AT D V +
Sbjct: 149 AVFEPSEAEISHTQKATLVCLATGFYPDHVEL 180
>3hpe_A Conserved hypothetical secreted protein; HP1286, erucamide,
fatty-acid binding; HET: ERU; 2.10A {Helicobacter
pylori}
Length = 164
Score = 30.8 bits (70), Expect = 0.083
Identities = 14/64 (21%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Query: 82 NGVGDPVTVDMTLEVLCKILPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVD 141
+GV PV ++ + P +K + ++R G+ + + VGD V ++
Sbjct: 100 HGVTKPVVLEAKI-QAPLQNPMNKKEFMVLQAEGK-INRKDFGIGKTFSDAVVGDEVKIE 157
Query: 142 MTLE 145
+ LE
Sbjct: 158 LKLE 161
Score = 25.4 bits (56), Expect = 7.7
Identities = 10/44 (22%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 52 PSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLE 95
P +K + ++R G+ + + VGD V +++ LE
Sbjct: 119 PMNKKEFMVLQAEGK-INRKDFGIGKTFSDAVVGDEVKIELKLE 161
>1u3h_A T-cell receptor alpha-chain; complex, immune system; 2.42A {Mus
musculus} SCOP: b.1.1.1 PDB: 1b88_A 1kj2_A* 1kb5_A
1d9k_A*
Length = 110
Score = 30.3 bits (69), Expect = 0.10
Identities = 21/99 (21%), Positives = 29/99 (29%), Gaps = 27/99 (27%)
Query: 14 SPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKD------------SSLPSGEKSLEGF 61
SP LTV +G T L C + W ++ S E F
Sbjct: 5 SPQ--SLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDG--RF 60
Query: 62 SITLEKVDRH--------QAG---VYQCTATNGVGDPVT 89
+I K ++ Q G Y C A+ G
Sbjct: 61 TIFFNKREKKLSLHIADSQPGDSATYFCAASANSGTYQR 99
>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor
complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1 b.1.2.1 PDB: 1p9m_A
Length = 303
Score = 30.9 bits (69), Expect = 0.11
Identities = 15/123 (12%), Positives = 35/123 (28%), Gaps = 12/123 (9%)
Query: 5 QMVPPSIRTSPSNGQLTVRKGGTITLECK-------ASGNPVPSIIWSKKDSSLPSGEKS 57
+++ P SP + V+ T C I+W ++P + +
Sbjct: 1 ELLDPCGYISPES--PVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYT 58
Query: 58 LEGFSITLEKVD--RHQAGVYQCTATNGVGDPVTVDMTLEVLCKILPSGEKSLEGFSITL 115
+ + + C G + ++ + P K+L
Sbjct: 59 IINRTASSVTFTDIASLNIQLTCNILT-FGQLEQNVYGITIISGLPPEKPKNLSCIVNEG 117
Query: 116 EKV 118
+K+
Sbjct: 118 KKM 120
>1tvd_A T cell receptor, ES204 V delta; immunoreceptor, TCR, delta chain,
variable domain; 1.90A {Homo sapiens} SCOP: b.1.1.1
Length = 116
Score = 29.9 bits (68), Expect = 0.12
Identities = 14/70 (20%), Positives = 20/70 (28%), Gaps = 14/70 (20%)
Query: 16 SNGQLTVRKGGTITLECKASGN-PVPSIIW------------SKKDSSLPSGEKSLEG-F 61
S+ TV G + L C P + W D S G +G F
Sbjct: 6 SSPDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRF 65
Query: 62 SITLEKVDRH 71
S+ +
Sbjct: 66 SVKHILTQKA 75
>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V,
NKP44-like, natural killer cell IG-like receptor,
inhibitory receptor; 1.70A {Homo sapiens}
Length = 110
Score = 29.8 bits (67), Expect = 0.13
Identities = 18/98 (18%), Positives = 34/98 (34%), Gaps = 22/98 (22%)
Query: 20 LTVRKGGTITLEC---------------KASGNPVPSIIWSKKDSSLPSGEKSLEG---- 60
+ GG+++++C I+ +K + +G S+
Sbjct: 6 VAGPVGGSLSVQCPYEKEHRTLNKYWCRPPQIFLCDKIVETKGSAGKRNGRVSIRDSPAN 65
Query: 61 --FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
F++TLE + AG Y C + D +EV
Sbjct: 66 LSFTVTLENLTEEDAGTYWC-GVDTPWLQDFHDPVVEV 102
>3mbe_C I-AG7; T cell receptor, histocompatability antigen, MHC class II,
I immune system; HET: NAG; 2.89A {Mus musculus}
Length = 229
Score = 30.8 bits (69), Expect = 0.13
Identities = 17/88 (19%), Positives = 29/88 (32%), Gaps = 20/88 (22%)
Query: 18 GQLTVRKGGTITLECKASGNPVPSIIWSKKDSS--------LPSGEKSLEGFSITLEKVD 69
L++ +G L C S + S+ W +++ L G K T +
Sbjct: 9 PALSLYEGADSGLRCNFSTT-MKSVQWFQQNHRGRLITLFYLAQGTKENGRLKSTFNSKE 67
Query: 70 RH-----------QAGVYQCTATNGVGD 86
R+ +G Y C A +G
Sbjct: 68 RYSTLHIKDAQLEDSGTYFCAAEDGGSG 95
>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor,
immune system/receptor/complex, TCR, MHC,
immunodominance, FLU, complex; 1.40A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E
2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D*
3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E
3kxf_E 2cde_B ...
Length = 252
Score = 30.7 bits (69), Expect = 0.13
Identities = 25/151 (16%), Positives = 49/151 (32%), Gaps = 26/151 (17%)
Query: 14 SPSNGQLTVRKGGTITLECKAS-------------GNPVPSIIWSKKDSSLPSGE----- 55
SP L ++G +TL C+ + G + I +S+ + G+
Sbjct: 9 SPKY--LFRKEGQNVTLSCEQNLNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGY 66
Query: 56 ----KSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMT--LEVLCKILPSGEKSLE 109
+ E F +T+ ++ Y C +++ L V + +
Sbjct: 67 SVSREKKESFPLTVTSAQKNPTAFYLCASSSRSSYEQYFGPGTRLTVTEDLKNVFPPEVA 126
Query: 110 GFSITLEKVDRHQAGVYQCTATNGVGDPVTV 140
F + ++ Q C AT D V +
Sbjct: 127 VFEPSEAEISHTQKATLVCLATGFYPDHVEL 157
>4ei6_A Valpha1 XV19 type II natural killer T cell recept variable
domain, human constant...; natural killer T cell
receptor, immune system; 1.60A {Mus musculus} PDB:
4ei5_C 4elk_A 4elm_E* 3qeu_A 1ao7_D 3qdj_D 3qdg_D
3qfj_D 1qsf_D 1qse_D* 3d39_D* 3d3v_D* 3h9s_D 3pwp_D
2gj6_D 3utp_D* 3uts_D 1qrn_D 3hg1_D 3rdt_A ...
Length = 208
Score = 30.4 bits (68), Expect = 0.14
Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 11/67 (16%)
Query: 14 SPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKD---------SSLPSGEKSLEGFSIT 64
SP L+V +GG +L C +S W ++ S G+K F+
Sbjct: 8 SPE--SLSVPEGGMASLNCTSSDRNFQYFWWYRQHSGEGPKALMSIFSDGDKKEGRFTAH 65
Query: 65 LEKVDRH 71
L K H
Sbjct: 66 LNKASLH 72
>1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity receptor,
immunoglobulin domain; 2.2A {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 30.0 bits (67), Expect = 0.14
Identities = 14/101 (13%), Positives = 31/101 (30%), Gaps = 23/101 (22%)
Query: 20 LTVRKGGTITLECKASG--NPVPSIIWSKKD---------SSLPSGEKSLEG-------- 60
L G T+T+ C+ + W K+ +S +
Sbjct: 20 LQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDP 79
Query: 61 ----FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97
F++T+ + +G Y C + V+ + ++
Sbjct: 80 DAGFFTVTMTDLREEDSGHYWCRIYRPSDNSVSKSVRFYLV 120
Score = 25.7 bits (56), Expect = 4.3
Identities = 6/37 (16%), Positives = 16/37 (43%)
Query: 111 FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 147
F++T+ + +G Y C + V+ + ++
Sbjct: 84 FTVTMTDLREEDSGHYWCRIYRPSDNSVSKSVRFYLV 120
>2bnu_A TCR alpha chain, T-cell receptor alpha chain C region;
superagonist peptide T-cell vaccines, transmembrane,
immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2bnq_D
2bnr_D 2f54_D 2pyf_A* 2pye_D* 2f53_D 2p5e_D* 2p5w_D*
3mv7_D 3mv8_D 3mv9_D 3utt_D 2cdg_A
Length = 203
Score = 30.3 bits (68), Expect = 0.18
Identities = 12/68 (17%), Positives = 29/68 (42%), Gaps = 12/68 (17%)
Query: 14 SPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDS--------SLPSG--EKSLEGFSI 63
P+ L+V +G + L C + + + ++ W ++D + S E++ +
Sbjct: 6 IPA--ALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNA 63
Query: 64 TLEKVDRH 71
+L+K
Sbjct: 64 SLDKSSGR 71
>3c6l_A TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus musculus}
SCOP: b.1.1.1 b.1.1.2
Length = 185
Score = 30.2 bits (68), Expect = 0.18
Identities = 18/91 (19%), Positives = 28/91 (30%), Gaps = 23/91 (25%)
Query: 14 SPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSS----------LPSGEKSLEGFSI 63
SP LTV +G T L C + W + S +K F+I
Sbjct: 6 SPQ--SLTVWEGETAILNCSYEDSTFDYFPWYHQFPGESPALLIAIRPVSNKKEDGRFTI 63
Query: 64 TLEKVDRH-----------QAGVYQCTATNG 83
K ++ + Y C A++
Sbjct: 64 FFNKREKKFSLHIADSQPGDSATYFCAASDN 94
>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane,
immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B*
3q5t_A
Length = 240
Score = 29.9 bits (67), Expect = 0.22
Identities = 23/152 (15%), Positives = 42/152 (27%), Gaps = 26/152 (17%)
Query: 13 TSPSNGQLTVRKGGTITLECKAS-------------GNPVPSIIWSKKDSSLPSGE---- 55
SP + + KGG L C G + +I + G
Sbjct: 7 QSPRH--IIKEKGGRSVLTCIPISGHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSR 64
Query: 56 -----KSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVD--MTLEVLCKILPSGEKSL 108
+ + ++ + +Y C ++ GD L VL + +
Sbjct: 65 FSVQQFDDYHSEMNMSALELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKV 124
Query: 109 EGFSITLEKVDRHQAGVYQCTATNGVGDPVTV 140
F + ++ Q C A D V +
Sbjct: 125 SLFEPSKAEIANKQKATLVCLARGFFPDHVEL 156
>2fgs_A Putative periplasmic protein; lipid binding protein, structural
genomics, protein structure initiative, PSI, nysgxrc;
2.90A {Campylobacter jejuni}
Length = 179
Score = 29.6 bits (67), Expect = 0.25
Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Query: 82 NGVGDPVTVDMTLEVLCKILPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVD 141
GV + +D + + K EK GFS+ K+ R T+T + D + ++
Sbjct: 105 AGVSKDIVLDAEIGGVAKGKDGKEKI--GFSLNG-KIKRSDFKFATSTSTITLSDDINLN 161
Query: 142 MTLE 145
+ +E
Sbjct: 162 IEVE 165
>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor,
structural genomics, PSI, protein structure initiative;
2.10A {Mus musculus}
Length = 113
Score = 28.9 bits (65), Expect = 0.25
Identities = 24/106 (22%), Positives = 46/106 (43%), Gaps = 25/106 (23%)
Query: 13 TSPSNGQLTVRKGGTITLECK-ASGNPVPSIIWSK------------KDSSLPSGEK--- 56
T P +++ ++ G++T++C+ SG W + D+S +K
Sbjct: 6 TGPE--EVSGQEQGSLTVQCRYTSGWKDYKKYWCQGVPQRSCKTLVETDASEQLVKKNRV 63
Query: 57 SLEG------FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
S+ F++T+E + AG+Y C T G DP +T+ +
Sbjct: 64 SIRDNQRDFIFTVTMEDLRMSDAGIYWCGITKGGLDP-MFKVTVNI 108
>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody,
immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL
SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2
b.1.1.2 PDB: 2qej_A*
Length = 214
Score = 29.4 bits (66), Expect = 0.28
Identities = 15/107 (14%), Positives = 25/107 (23%), Gaps = 14/107 (13%)
Query: 9 PSIR-TSPSNGQLTVRKGGTITLECKASGNPVPSIIW-------SKKDSSLPSGEKSLEG 60
P + P+ L + G L C +G S + K P
Sbjct: 4 PRLSLHRPALEDLLL--GSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPERDLCGC 61
Query: 61 FSI----TLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCKILPS 103
+S+ + + CTA + P
Sbjct: 62 YSVSSVLPGCAEPWNHGKTFTCTAAYPESKTPLTATLSKSGNTFRPE 108
>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane,
phosphorylation, immunoglobulin fold, signal; 1.90A
{Rattus norvegicus} SCOP: b.1.1.1
Length = 124
Score = 29.2 bits (65), Expect = 0.29
Identities = 20/117 (17%), Positives = 33/117 (28%), Gaps = 27/117 (23%)
Query: 20 LTVRKGGTITLECK----ASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGV 75
+ G +TL C + S W + G ++ F + + G
Sbjct: 9 VYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQP---EGGRDAISIFHYAKGQPYIDEVGT 65
Query: 76 YQCTATNGVGDPVTVDMTLEVLCKILPSGEKSLEGFSITLEKVDRHQAGVYQCTATN 132
++ VGDP D SI + +D G + C N
Sbjct: 66 FK-ERIQWVGDPSWKD-------------------GSIVIHNLDYSDNGTFTCDVKN 102
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.8 bits (66), Expect = 0.32
Identities = 14/114 (12%), Positives = 29/114 (25%), Gaps = 38/114 (33%)
Query: 43 IWSKKDSSLPSGEKSLEGFSI---TL------EKVDRHQAGVYQCTATNGVGDPVTVDMT 93
+ + K F++ L + D A + + +T D
Sbjct: 253 VQNAKA---------WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303
Query: 94 LEVLCKILPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 147
+L K L + L + T +P + + E +
Sbjct: 304 KSLLLKYLDCRPQDL-----------PREV----LT-----TNPRRLSIIAESI 337
>4f9p_D 103.2 anti-BTN3A1 antibody fragment; B7 superfamily, butyrophilin,
CD277, immune system; 3.52A {Mus musculus}
Length = 254
Score = 29.6 bits (67), Expect = 0.32
Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 19/88 (21%)
Query: 10 SIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIW----------------SKKDSSLP- 52
I + S L+V G +++L C+AS + ++ W S+ +P
Sbjct: 137 DIVLTQSPVTLSVTPGDSVSLSCRASQSISNNLHWYRQKSHESPRLLIKYASQSIFGIPS 196
Query: 53 --SGEKSLEGFSITLEKVDRHQAGVYQC 78
SG S F++++ V+ G+Y C
Sbjct: 197 RFSGSGSGTEFTLSINSVETEDFGIYFC 224
>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin
mucin, signaling protein; 1.95A {Mus musculus} PDB:
3kaa_A*
Length = 109
Score = 28.7 bits (64), Expect = 0.34
Identities = 20/131 (15%), Positives = 37/131 (28%), Gaps = 30/131 (22%)
Query: 20 LTVRKGGTITLECKASG---NPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVY 76
V G L C + + + W K P + + E V ++ Y
Sbjct: 4 YKVEVGKNAYLPCSYTLPTSGTLVPMCWGK--GFCPWSQCTNELLRTDERNVTYQKSSRY 61
Query: 77 QCTATNGVGDPVTVDMTLEVLCKILPSGEKSLEGFSITLEKVDRHQAGVYQCTA-TNGVG 135
Q GD S+ ++ V G Y C G+
Sbjct: 62 QLKGDLNKGD------------------------VSLIIKNVTLDDHGTYCCRIQFPGLM 97
Query: 136 DPVTVDMTLEV 146
+ +++ L++
Sbjct: 98 NDKKLELKLDI 108
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein
receptor, immunoglobulin V domain fold, symmetric dimer;
1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B
2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B
1p6a_B
Length = 126
Score = 28.7 bits (64), Expect = 0.40
Identities = 22/142 (15%), Positives = 39/142 (27%), Gaps = 26/142 (18%)
Query: 10 SIRTSPSNGQLTVRKGGTITLECKASGNPVP----SIIWSKKDSSLPSGEKSLEGFSITL 65
S+ + + KG T L CK + +P I W + ++ + +
Sbjct: 5 SLSITTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVI--ILYSG 62
Query: 66 EKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCKILPSGEKSLEGFSITLEKVDRHQAGV 125
+K+ + S + SI + + G
Sbjct: 63 DKIYDDYYPDLKGRVH-------------------FTSNDLKSGDASINVTNLQLSDIGT 103
Query: 126 YQCTATNGVGDPVTVDMTLEVL 147
YQC G + L VL
Sbjct: 104 YQCKVKKAPGV-ANKKIHLVVL 124
>1lp9_E T-cell receptor alpha chain; immunoregulatory complex, class I
MHC:TCR CO-crystal, immune; 2.00A {Mus musculus} SCOP:
b.1.1.1 b.1.1.2 PDB: 2j8u_E 2jcc_E 2uwe_E 1nfd_A*
Length = 194
Score = 28.8 bits (64), Expect = 0.45
Identities = 12/64 (18%), Positives = 21/64 (32%), Gaps = 10/64 (15%)
Query: 18 GQLTVRKGGTITLECKASGNPVPSIIWSKKDSS----------LPSGEKSLEGFSITLEK 67
G +T+ +G + L C P + W + + + +GF TL K
Sbjct: 9 GLVTLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHK 68
Query: 68 VDRH 71
Sbjct: 69 SSSS 72
>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta
barrel, immunoglobulin fold, IGV domain, TIM, immune
system; 1.50A {Mus musculus}
Length = 115
Score = 28.4 bits (63), Expect = 0.45
Identities = 21/110 (19%), Positives = 35/110 (31%), Gaps = 27/110 (24%)
Query: 19 QLTVRKGGTITLECKASGNP--VPSIIWSKKD------------------SSLPSGEKSL 58
+ G +TL C S + + + W + + + L
Sbjct: 6 AVQGLAGHPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSRYQL 65
Query: 59 EG------FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCKILP 102
+G S+T+E G Y C G VD LEV +++P
Sbjct: 66 KGNISEGNVSLTIENTVVGDGGPYCCVVEIP-GAFHFVDYMLEVKPELVP 114
>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein
complex, hydrolase/immune system complex; 1.45A
{Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N
Length = 113
Score = 28.5 bits (64), Expect = 0.48
Identities = 14/83 (16%), Positives = 23/83 (27%), Gaps = 15/83 (18%)
Query: 20 LTVRKGGTITLECKASGNPVPS--IIWSKKDS-SLPSGEKSLEG-FSITLEKVDRHQ--- 72
+T G ++T+ C W +K S S G + T+ +
Sbjct: 10 VTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLR 69
Query: 73 --------AGVYQCTATNGVGDP 87
G Y+C G
Sbjct: 70 INDLTVEDGGTYRCGLGVAGGYC 92
>3gsn_A RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human
cytomegalovirus, PP65, T cell receptor (TCR), immune
response, public response; 2.80A {Homo sapiens}
Length = 199
Score = 28.7 bits (64), Expect = 0.50
Identities = 14/94 (14%), Positives = 25/94 (26%), Gaps = 27/94 (28%)
Query: 13 TSPSNGQLTVRKGGTITLECKASGNPVPSIIW------------SKKDSSLPSGEKSLEG 60
SP L V++G + C + ++ W + +K
Sbjct: 5 QSPQ--SLHVQEGDSTNFTCSFPSSNFYALHWYRWETAKSPEALFVMTLNGDEKKKG--R 60
Query: 61 FSITLEKVDRH-----------QAGVYQCTATNG 83
S TL + + + Y C G
Sbjct: 61 ISATLNTKEGYSYLYIKGSQPEDSATYLCARNTG 94
>3pv7_A B7-H6, IG-like domain-containing protein
DKFZP686O24166/DKFZP686I21167; NK cell receptor,
receptor-ligand complex, immune system; HET: NAG; 2.00A
{Homo sapiens} PDB: 3pv6_A*
Length = 248
Score = 28.9 bits (64), Expect = 0.53
Identities = 10/106 (9%), Positives = 25/106 (23%), Gaps = 36/106 (33%)
Query: 2 EQLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSI------------------- 42
+++M+ +T+ C + +I
Sbjct: 3 LKVEMMAGG--------TQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVK 54
Query: 43 IWSKKDSSLPSGEKSLEG---------FSITLEKVDRHQAGVYQCT 79
++ + S+ L + +AG Y+C
Sbjct: 55 VFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPGIQLEEAGEYRCE 100
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain,
glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo
sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A*
1fp5_A 1f6a_B 1g84_A
Length = 323
Score = 28.9 bits (64), Expect = 0.57
Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
Query: 7 VPPSIRTSPSNGQLTVRKGGTITLECKASG-NPVP-SIIWSKKDSSLPSG 54
PP+++ S+ TI L C SG P I W + +
Sbjct: 6 TPPTVKILQSSCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVD 55
>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus
musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A
1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B
2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B*
2aq3_A 3mc0_A 3byt_A 3bzd_A ...
Length = 238
Score = 28.8 bits (64), Expect = 0.59
Identities = 31/148 (20%), Positives = 46/148 (31%), Gaps = 28/148 (18%)
Query: 20 LTVRKGGTITLECKASGNPVPSIIW-------------------SKKDSSLPSG----EK 56
GG +TL C+ + N ++ W S + +P G
Sbjct: 9 KVAVTGGKVTLSCQQTNN-HNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRP 67
Query: 57 SLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMT----LEVLCKILPSGEKSLEGFS 112
S E FS+ LE Q VY C + G G L VL + + F
Sbjct: 68 SQEQFSLILELATPSQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFE 127
Query: 113 ITLEKVDRHQAGVYQCTATNGVGDPVTV 140
+ ++ Q C A D V +
Sbjct: 128 PSKAEIANKQKATLVCLARGFFPDHVEL 155
>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology,
IGSF, cell SU receptor signalling, glycosylation,
membrane protein; HET: NAG; 2.90A {Homo sapiens}
Length = 118
Score = 27.9 bits (62), Expect = 0.64
Identities = 18/119 (15%), Positives = 31/119 (26%), Gaps = 37/119 (31%)
Query: 7 VPPSIRTSPSNGQLTVRKGGTITLECKASG-----NPVPSIIWSKKDS------------ 49
P + G ++TL C V + W++
Sbjct: 6 APTQVPGFL---------GDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQG 56
Query: 50 -SLPSGEK----------SLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97
S ++ L S+ + + G Y C +VD+ L VL
Sbjct: 57 PSYSESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVL 115
>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II,
MEM receptor, molecular mimicry, multiple sclerosis,
immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo
sapiens}
Length = 279
Score = 28.3 bits (63), Expect = 0.77
Identities = 4/27 (14%), Positives = 13/27 (48%)
Query: 18 GQLTVRKGGTITLECKASGNPVPSIIW 44
+ + G ++ +EC++ ++ W
Sbjct: 32 SWVISKSGTSVKIECRSLDFQATTMFW 58
>1xed_A Polymeric-immunoglobulin receptor; IG-like fold, immune system;
1.90A {Homo sapiens} SCOP: b.1.1.1
Length = 117
Score = 27.9 bits (62), Expect = 0.78
Identities = 18/109 (16%), Positives = 38/109 (34%), Gaps = 27/109 (24%)
Query: 13 TSPSNGQLTVRKGGTITLECK---ASGNPVPSIIWSKKD---------SSLPSGEKSLEG 60
P ++ +G ++++ C S N W ++ SS G
Sbjct: 5 FGPE--EVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAG 62
Query: 61 ------------FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97
F + + ++ + +G Y+C ++ D++LEVL
Sbjct: 63 RANLTNFPENGTFVVNIAQLSQDDSGRYKC-GLGINSRGLSFDVSLEVL 110
Score = 25.2 bits (55), Expect = 5.7
Identities = 9/37 (24%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 111 FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 147
F + + ++ + +G Y+C ++ D++LEVL
Sbjct: 75 FVVNIAQLSQDDSGRYKC-GLGINSRGLSFDVSLEVL 110
>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo
sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E
3mfg_B 2ij0_E
Length = 246
Score = 28.3 bits (63), Expect = 0.84
Identities = 4/27 (14%), Positives = 13/27 (48%)
Query: 18 GQLTVRKGGTITLECKASGNPVPSIIW 44
+ + G ++ +EC++ ++ W
Sbjct: 9 SWVISKSGTSVKIECRSLDFQATTMFW 35
>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel,
immunoglobulin fold, IGV domain, TIM, immune system;
2.50A {Mus musculus}
Length = 116
Score = 27.6 bits (61), Expect = 0.86
Identities = 22/130 (16%), Positives = 38/130 (29%), Gaps = 28/130 (21%)
Query: 19 QLTVRKGGTITLECKASGNP-VPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQ 77
++ G +TL C S + + W + PS +V ++ Y
Sbjct: 6 EVKGVVGHPVTLPCTYSTYRGITTTCWGR--GQCPSSACQNTLIWTNGHRVTYQKSSRYN 63
Query: 78 CTATNGVGDPVTVDMTLEVLCKILPSGEKSLEGFSITLEKVDRHQAGVYQCTATN-GVGD 136
GD S+T+E +G+Y C G +
Sbjct: 64 LKGHISEGD------------------------VSLTIENSVESDSGLYCCRVEIPGWFN 99
Query: 137 PVTVDMTLEV 146
V +L+V
Sbjct: 100 DQKVTFSLQV 109
>3tjh_C 42F3 alpha; IG MHC, antigen recognition, TCR-PMHC, membrane
receptor, IM system; 2.12A {Mus musculus} PDB: 3tpu_A
3tfk_C 1j8h_D* 1fyt_D* 3rev_A 1mwa_A* 1g6r_A* 1tcr_A*
2ckb_A 1zgl_M 3c5z_A 1i9e_A* 2oi9_B 2e7l_A 2icw_I
3e2h_B 3e3q_D
Length = 226
Score = 28.1 bits (62), Expect = 0.90
Identities = 14/67 (20%), Positives = 25/67 (37%), Gaps = 11/67 (16%)
Query: 16 SNGQLTVRKGGTITLECKASGNPVPSIIWSKKDS-----------SLPSGEKSLEGFSIT 64
+ ++TV +G ++ L CK S + P + W + S + + GF
Sbjct: 15 PDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQMLLKYYSGDPVVQGVNGFEAE 74
Query: 65 LEKVDRH 71
K D
Sbjct: 75 FSKSDSS 81
>2nw2_A ELS4 TCR alpha chain; T cell receptor, immune system; 1.40A {Homo
sapiens} PDB: 2nx5_D 4dzb_A
Length = 200
Score = 28.0 bits (62), Expect = 0.95
Identities = 9/68 (13%), Positives = 24/68 (35%), Gaps = 11/68 (16%)
Query: 13 TSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKD---------SSLPSGEKSLEGFSI 63
P+ ++T +G + + C + + W ++ ++ G + FS
Sbjct: 4 DQPT--EMTATEGAIVQINCTYQTSGFNGLFWYQQHAGEAPTFLSYNVLDGLEEKGRFSS 61
Query: 64 TLEKVDRH 71
L + +
Sbjct: 62 FLSRSKGY 69
>3rgv_A YAE62 TCR A chain; TCR, MHC, MHC class I, immune system; 2.90A
{Mus musculus} PDB: 3c60_A
Length = 200
Score = 28.0 bits (62), Expect = 1.0
Identities = 13/72 (18%), Positives = 26/72 (36%), Gaps = 12/72 (16%)
Query: 10 SIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDS--------SLPSG--EKSLE 59
S+ Q+T+ + + + C S P++ W + S + + + S
Sbjct: 2 SVTQMQG--QVTLSENDFLFINCTYSTTGYPTLFWYVQYSGEGPQLLLQVTTANNKGSSR 59
Query: 60 GFSITLEKVDRH 71
GF T +K
Sbjct: 60 GFEATYDKGTTS 71
>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin
fold, immune surveillance of cell stress PROT A/B,
MIC-A/B binding, epithelium; 3.04A {Homo sapiens}
Length = 259
Score = 27.9 bits (62), Expect = 1.2
Identities = 9/65 (13%), Positives = 21/65 (32%), Gaps = 15/65 (23%)
Query: 16 SNGQLTVRKGGTITLECKASGN-PVPSIIWSK------------KDSSLPSGEKSLEGFS 62
+ +++ +TL C + I W K + S + + +S
Sbjct: 142 AQSSVSMPVRKAVTLNCLYETSWWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSG--RYS 199
Query: 63 ITLEK 67
+ +K
Sbjct: 200 VNFKK 204
Score = 26.7 bits (59), Expect = 2.7
Identities = 4/25 (16%), Positives = 9/25 (36%)
Query: 20 LTVRKGGTITLECKASGNPVPSIIW 44
+ + G + + C + I W
Sbjct: 12 VIRQTGSSAEITCDLAEGSTGYIHW 36
>2q86_A Valpha14 TCR; INKT cells, TCR, glycolipid recognition, innate
immunity, IM system; HET: NAG BMA MAN FUC; 1.85A {Mus
musculus} PDB: 3quy_C* 3o9w_C* 3qux_C* 3o8x_C* 3quz_C*
3rtq_C* 3rzc_C* 3ta3_C* 3tvm_C* 3qi9_C* 3ard_C* 3are_C*
3arf_C* 3arg_C* 3he6_C* 3he7_C* 3arb_C* 3scm_C* 3sda_C*
3sdc_C* ...
Length = 229
Score = 27.7 bits (61), Expect = 1.2
Identities = 21/91 (23%), Positives = 31/91 (34%), Gaps = 23/91 (25%)
Query: 14 SPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSS----------LPSGEKSLEGFSI 63
SP L VR+G L+C S P + W K+D+ + S +S
Sbjct: 7 SPQ--SLVVRQGENCVLQCNYSVTPDNHLRWYKQDTGKGLVLLTVLVDQKDKTSNGRYSA 64
Query: 64 TLEKVDRH-----------QAGVYQCTATNG 83
TL+K +H Y C +
Sbjct: 65 TLDKDAKHSTLHITATLLDDTATYFCVVGDR 95
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system;
1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E
3csp_A 1py9_A
Length = 139
Score = 27.6 bits (61), Expect = 1.2
Identities = 15/123 (12%), Positives = 31/123 (25%), Gaps = 36/123 (29%)
Query: 2 EQLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNP---VPSIIWSKKDSSLP-----S 53
Q +++ P + G L C+ S + W + S +
Sbjct: 5 GQFRVIGPG-------HPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRN 57
Query: 54 GEKSLEG--------------------FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMT 93
G+ ++ ++ V G Y C + +
Sbjct: 58 GKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAA-VE 116
Query: 94 LEV 96
L+V
Sbjct: 117 LKV 119
>2jju_A Signal regulatory protein beta-1; immunoglobulin domain,
immunoglobulin superfamily, immune system,
transmembrane, paired receptor; 1.19A {Homo sapiens}
PDB: 2jjv_A 2uv3_A* 2jjt_A* 2jjs_A* 2jjw_A
Length = 127
Score = 26.9 bits (60), Expect = 1.4
Identities = 15/85 (17%), Positives = 31/85 (36%), Gaps = 22/85 (25%)
Query: 14 SPSNGQLTVRKGGTITLECKASGN-------------PVPSIIWSKKDSSLP-------S 53
+ ++V G + TL C + +I+++K+ P
Sbjct: 9 PEKS--VSVAAGESATLRCAMTSLIPVGPIMWFRGAGAGRELIYNQKEGHFPRVTTVSEL 66
Query: 54 GEKSLEGFSITLEKVDRHQAGVYQC 78
+++ FSI++ + AG Y C
Sbjct: 67 TKRNNLDFSISISNITPADAGTYYC 91
>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4;
beta barrel, immunoglobulin fold, IGV domain, TIM,
glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB:
3bi9_X* 3bib_X*
Length = 116
Score = 26.8 bits (59), Expect = 1.7
Identities = 19/89 (21%), Positives = 29/89 (32%), Gaps = 26/89 (29%)
Query: 16 SNGQLTVRKGGTITLECKASG--NPVPSIIWSK------------------KDSSLPSGE 55
S + G +TL C S+ W K + S S +
Sbjct: 2 SEDTIIGFLGQPVTLPCHYLSWSQSRNSMCWGKGSCPNSKCNAELLRTDGTRIISRKSTK 61
Query: 56 KSLEG------FSITLEKVDRHQAGVYQC 78
+L G S+T+ +R +GVY C
Sbjct: 62 YTLLGKVQFGEVSLTISNTNRGDSGVYCC 90
>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral
virus, virus-immune SYST complex; 30.00A {Mus musculus}
SCOP: i.6.1.1
Length = 438
Score = 27.6 bits (62), Expect = 1.7
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 16 SNGQLTVRKGGTITLECKASG 36
S L V G T+ C+AS
Sbjct: 7 SPASLAVSLGQRATISCRASE 27
>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen
complex, HIV inhibiting antibody; 1.89A {Mus musculus}
PDB: 1jp5_A
Length = 247
Score = 27.2 bits (61), Expect = 1.8
Identities = 18/100 (18%), Positives = 35/100 (35%), Gaps = 33/100 (33%)
Query: 3 QLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPS-------------------II 43
+ P + S G ++ C++S V + +I
Sbjct: 3 LMTQTPLYLPVSL---------GDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLI 53
Query: 44 W--SKKDSSLP---SGEKSLEGFSITLEKVDRHQAGVYQC 78
+ S + S +P SG S F++ + +V+ G+Y C
Sbjct: 54 YKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGIYYC 93
>3ux9_B SCFV antibody; five helices, long loop connecting helix,
hydrophobic intera cytokine-immune system complex;
2.80A {Homo sapiens}
Length = 256
Score = 27.2 bits (61), Expect = 1.9
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 10/37 (27%)
Query: 1 MEQLQMV-PPSIRTSPSNGQLTVRKGGTITLECKASG 36
M + + PPS+ +P G +T+ C S
Sbjct: 1 MADIVLTQPPSVSGAP---------GQRVTISCSGSS 28
>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A
{Mus musculus}
Length = 270
Score = 27.3 bits (60), Expect = 2.1
Identities = 22/155 (14%), Positives = 42/155 (27%), Gaps = 30/155 (19%)
Query: 13 TSPSNGQLTVRKGGTITLECKASGNPVPSIIW-------------------SKKDSSLP- 52
+P L +G + C P + W + +
Sbjct: 32 QTPRY--LVKGQGQKAKMRCIPEKGH-PVVFWYQQNKNNEFKFLINFQNQEVLQQIDMTE 88
Query: 53 ---SGEK-SLEGFSITLEKVDRHQAGVYQCTATNGVGDPV---TVDMTLEVLCKILPSGE 105
S E S S+ ++ + + +Y C ++ L VL +
Sbjct: 89 KRFSAECPSNSPCSLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFP 148
Query: 106 KSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTV 140
+ F + ++ Q C AT D V +
Sbjct: 149 PEVAVFEPSEAEISHTQKATLVCLATGFYPDHVEL 183
>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F
membrane, envelope protein, fusion protein, membrane,
trans virion; HET: NAG BMA; 3.20A {Homo sapiens}
Length = 280
Score = 26.9 bits (60), Expect = 2.7
Identities = 14/103 (13%), Positives = 29/103 (28%), Gaps = 21/103 (20%)
Query: 8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPS----------------IIW--SKKDS 49
++ T TL C + N V + + + + + S
Sbjct: 137 GGIQPGLTQPPSVSKGLRQTATLTCTGNSNNVGNQGAAWLQQHQGHPPKLLSYRNNDRPS 196
Query: 50 SLP---SGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVT 89
+ S +S S+T+ + Y C+ + V
Sbjct: 197 GISERFSASRSGNTASLTITGLQPEDEADYYCSTWDSSLSAVV 239
>2yz1_A Tyrosine-protein phosphatase non-receptor type substrate 1;
beta-sandwich, structural genomics, NPPSFA; 1.40A {Mus
musculus}
Length = 120
Score = 26.1 bits (58), Expect = 2.7
Identities = 15/85 (17%), Positives = 27/85 (31%), Gaps = 22/85 (25%)
Query: 14 SPSNGQLTVRKGGTITLECKASGN-------------PVPSIIWSKKDSSLP-------S 53
+ ++V G + L C + +I+S P +
Sbjct: 13 PEKS--VSVAAGDSTVLNCTLTSLLPVGPIKWYRGVGQSRLLIYSFTGEHFPRVTNVSDA 70
Query: 54 GEKSLEGFSITLEKVDRHQAGVYQC 78
+++ FSI + V AG Y C
Sbjct: 71 TKRNNMDFSIRISNVTPEDAGTYYC 95
>2z35_A T-cell receptor alpha-chain; immune receptor, immune system;
2.20A {Mus musculus} PDB: 2pxy_A 2z31_A 1ac6_A
Length = 112
Score = 26.1 bits (58), Expect = 3.1
Identities = 11/70 (15%), Positives = 21/70 (30%), Gaps = 16/70 (22%)
Query: 14 SPSNGQLTVRKGGTITLECKASGNPVPSIIW------------SKKDSSLPSGEKSLEGF 61
+ Q+ + + +T+ C S + P++ W + G GF
Sbjct: 6 TGG--QVALSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSR--GF 61
Query: 62 SITLEKVDRH 71
T K
Sbjct: 62 EATYNKEATS 71
>1oga_D T-cell receptor alpha chain V region, beta-2-microglobulin;
immune system/receptor, immune system/receptor/complex,
TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2xna_A 2xn9_A
2vlm_D 2vlk_D 2vlj_D 2vlr_D 2cdf_A 2wbj_C* 3qdm_D
3qeq_D
Length = 215
Score = 26.5 bits (58), Expect = 3.2
Identities = 13/95 (13%), Positives = 30/95 (31%), Gaps = 28/95 (29%)
Query: 14 SPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKD------------SSLPSGEKSLEGF 61
SP L++++G +T+ C +S + S+ W +++ + +
Sbjct: 7 SPQ--FLSIQEGENLTVYCNSS-SVFSSLQWYRQEPGEGPVLLVTVVTGGEVKKLK--RL 61
Query: 62 SITLEKVDRH-----------QAGVYQCTATNGVG 85
+ + G+Y C G
Sbjct: 62 TFQFGDARKDSSLHITAAQPGDTGLYLCAGAGSQG 96
>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid
IG-like receptor, inhibitory receptor, myelo-monocytic
cells; 2.60A {Homo sapiens}
Length = 124
Score = 26.0 bits (57), Expect = 3.6
Identities = 12/100 (12%), Positives = 30/100 (30%), Gaps = 23/100 (23%)
Query: 19 QLTVRKGGTITLECK---------------ASGNPVPSIIWSKKDSSLP-------SGEK 56
+ + G++T++C A ++ + +
Sbjct: 11 TVNGLERGSLTVQCVYRSGWETYLKWWCRGAIWRDCKILVKTSGSEQEVKRDRVSIKDNQ 70
Query: 57 SLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
F++T+E + + A Y C D V + + +
Sbjct: 71 KNRTFTVTMEDLMKTDADTYWCGIEKTGNDL-GVTVQVTI 109
>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY
high affinity, antibody binding, electrostatics,
directed evolution; HET: FLU; 1.50A {Homo sapiens}
Length = 268
Score = 26.2 bits (58), Expect = 3.8
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 16 SNGQLTVRKGGTITLECKASGNPVPS 41
+ L V G ++ C++S + V S
Sbjct: 21 TPLSLPVSLGDQASISCRSSQSLVHS 46
>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune
system, antibody, ENA11His antibody, immunoglobulin
domain; 2.75A {Mus musculus}
Length = 254
Score = 26.3 bits (58), Expect = 4.1
Identities = 11/65 (16%), Positives = 23/65 (35%), Gaps = 1/65 (1%)
Query: 26 GTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATN-GV 84
I ++ K G+ + + + ++TL K + + Y C AT+
Sbjct: 184 KDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTS 243
Query: 85 GDPVT 89
P+
Sbjct: 244 TSPIV 248
>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA,
IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB:
3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A
Length = 257
Score = 26.1 bits (58), Expect = 4.2
Identities = 26/114 (22%), Positives = 39/114 (34%), Gaps = 35/114 (30%)
Query: 3 QLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGN------------PVPS---IIW--S 45
L P + SP G +TL C AS + P S I+ S
Sbjct: 143 VLTQSPAIMSASP---------GEKVTLTCSASSSVSSSHLYWYQQKPGSSPKLWIYSTS 193
Query: 46 KKDSSLP---SGEKSLEGFSITLEKVDRHQAGVYQCTATN------GVGDPVTV 90
S +P SG S +S+T+ ++ A Y C + G G + +
Sbjct: 194 NLASGVPARFSGSGSGTSYSLTISSMEAEDAASYFCHQWSSFPFTFGSGTKLEI 247
>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV,
allergen, antimicrobial, bacteriolytic enzyme,
glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo
sapiens} PDB: 2znw_A*
Length = 242
Score = 26.4 bits (58), Expect = 4.3
Identities = 18/95 (18%), Positives = 34/95 (35%), Gaps = 28/95 (29%)
Query: 3 QLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGN----------PVPSIIW------SK 46
L P ++ +P +++L C+AS + S+
Sbjct: 3 VLTQSPATLSVTPG---------NSVSLSCRASQSIGNNLHXYQQKSHESPRLLIKYASQ 53
Query: 47 KDSSLP---SGEKSLEGFSITLEKVDRHQAGVYQC 78
S +P SG S F++++ V+ G+Y C
Sbjct: 54 SISGIPSRFSGSGSGTDFTLSINSVETEDFGMYFC 88
>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus
musculus} PDB: 2qhr_L 3ffd_B 4dcq_A
Length = 218
Score = 26.1 bits (58), Expect = 4.5
Identities = 5/24 (20%), Positives = 8/24 (33%), Gaps = 3/24 (12%)
Query: 14 SPSNGQLTVRKGGTITLECKASGN 37
S S + G + L C +
Sbjct: 7 SSS---ASFSLGASAKLTCTLNSQ 27
>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune
system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Length = 242
Score = 26.1 bits (58), Expect = 4.5
Identities = 7/21 (33%), Positives = 7/21 (33%)
Query: 16 SNGQLTVRKGGTITLECKASG 36
T T LEC SG
Sbjct: 7 PQISSTKTLSKTARLECVVSG 27
>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN;
1.75A {Gallus gallus}
Length = 231
Score = 25.8 bits (56), Expect = 5.5
Identities = 9/38 (23%), Positives = 13/38 (34%), Gaps = 3/38 (7%)
Query: 8 PPSIRTS-PSNGQLTVRKGGTITLECKASGNPVPSIIW 44
P + PS G+L + L C P S +
Sbjct: 12 PIQLYAIPPSPGELYI--SLDAKLRCLVVNLPSDSSLS 47
>3bp6_A Programmed cell death protein 1; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain,
membrane, transmembrane, receptor; 1.60A {Mus musculus}
PDB: 3rnk_A 3sbw_A 3bp5_A 1npu_A 3rnq_A
Length = 117
Score = 25.4 bits (56), Expect = 5.6
Identities = 8/25 (32%), Positives = 10/25 (40%), Gaps = 2/25 (8%)
Query: 14 SPSNGQLTVRKGGTITLECKASGNP 38
P+ LTV +G T C S
Sbjct: 5 YPA--WLTVSEGANATFTCSLSNWS 27
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of
[NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET:
APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB:
3vti_A
Length = 761
Score = 25.9 bits (57), Expect = 5.7
Identities = 6/30 (20%), Positives = 13/30 (43%)
Query: 59 EGFSITLEKVDRHQAGVYQCTATNGVGDPV 88
+ + +V H A + C A + + + V
Sbjct: 472 KSLDLPKIEVQHHHAHIASCMAEHNLDEKV 501
Score = 25.9 bits (57), Expect = 5.7
Identities = 6/30 (20%), Positives = 13/30 (43%)
Query: 109 EGFSITLEKVDRHQAGVYQCTATNGVGDPV 138
+ + +V H A + C A + + + V
Sbjct: 472 KSLDLPKIEVQHHHAHIASCMAEHNLDEKV 501
>1fo0_B Protein (BM3.3 T cell receptor beta-chain); class I MHC, H-2KB,
TCR-PMHC complex, immune system; 2.50A {Mus musculus}
SCOP: b.1.1.1 PDB: 1nam_B* 2ol3_B* 1kb5_B 1kj2_B*
Length = 112
Score = 25.0 bits (55), Expect = 6.1
Identities = 17/99 (17%), Positives = 32/99 (32%), Gaps = 25/99 (25%)
Query: 14 SPSNGQLTVRKGGTITLECKASGNPVPSIIW-------------------SKKDSSLPSG 54
+P V +G + L C + P + W K+ SLP
Sbjct: 7 NPRW--RLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGA 64
Query: 55 E---KSLEGFSITLEKVDRHQAGVYQCT-ATNGVGDPVT 89
+ + + L+ + Q CT + + VG+ +
Sbjct: 65 DYLATRVTDTELRLQVANMSQGRTLYCTCSADRVGNTLY 103
>3r8b_B G5-8, enterotoxin type B; immunoglobulin-like, OB-fold,
toxin-immune system complex; 2.95A {Rattus norvegicus}
Length = 125
Score = 25.2 bits (56), Expect = 6.7
Identities = 21/88 (23%), Positives = 30/88 (34%), Gaps = 25/88 (28%)
Query: 14 SPSNGQLTVRKGGTITLECKASGNPVPSIIW-------------------SKKDSSLPSG 54
SP N G +TL CK + + ++ W + + +P G
Sbjct: 11 SPRN--KVAVTGEKVTLSCKQTNSYFNNMYWYRQDTGHELRLIFMSHGIRNVEKGDIPDG 68
Query: 55 ----EKSLEGFSITLEKVDRHQAGVYQC 78
S E FS+ LE Q VY C
Sbjct: 69 YKASRPSQENFSLILELATPSQTSVYFC 96
>4g4f_A Tumor necrosis factor ligand superfamily member 1;
glucocorticoid-induced TNF receptor ligand, immune
system, T structural genomics; 1.85A {Otolemur
garnettii}
Length = 126
Score = 25.0 bits (54), Expect = 7.0
Identities = 15/96 (15%), Positives = 29/96 (30%), Gaps = 17/96 (17%)
Query: 3 QLQMVPPSIRTSPSNGQLTVRKGGTITL-----ECKASGNPVPSIIWSKKDSSLPSGEKS 57
Q+ P S G+L + + G + A P + +K+ ++
Sbjct: 20 QMTSRKPPCVNSLPEGKLKILQDGLYLIYGQVAPSTAYKGVAPFAVQLRKNEAMLQT--- 76
Query: 58 LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMT 93
+T G Y+ A GD + +
Sbjct: 77 -----LTSNSTIYDVGGTYEFHA----GDIIDLIFD 103
>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family,
SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C
Length = 264
Score = 25.4 bits (56), Expect = 7.2
Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 9/43 (20%)
Query: 3 QLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWS 45
L P S+ S G +T+ CK+S + S
Sbjct: 7 VLTQTPSSLPVSV---------GEKVTMTCKSSQTLLYSNNQK 40
>1fo0_A Protein (BM3.3 T cell receptor alpha-chain); class I MHC, H-2KB,
TCR-PMHC complex, immune system; 2.50A {Mus musculus}
SCOP: b.1.1.1 PDB: 1nam_A*
Length = 116
Score = 25.0 bits (55), Expect = 7.4
Identities = 9/66 (13%), Positives = 23/66 (34%), Gaps = 12/66 (18%)
Query: 18 GQLTVRKGGTITLECKAS-GNPVPSIIWSKKD-----------SSLPSGEKSLEGFSITL 65
++V + T+T++C + + W K+ S ++ +S+
Sbjct: 8 TSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNF 67
Query: 66 EKVDRH 71
+K
Sbjct: 68 QKPKSS 73
>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL
BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2
b.1.1.2 PDB: 1i1a_D*
Length = 239
Score = 25.3 bits (55), Expect = 7.6
Identities = 12/90 (13%), Positives = 24/90 (26%), Gaps = 14/90 (15%)
Query: 8 PPSIRTSPSNGQLTVRKGGTITLECKASG----NPVPSIIWSKKDSSLP----------S 53
S+ P + + G T + C +P W D + S
Sbjct: 15 VSSVFIFPPKTKDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQS 74
Query: 54 GEKSLEGFSITLEKVDRHQAGVYQCTATNG 83
+ + + D ++C +G
Sbjct: 75 NSTLRSVSELPIVERDWLNGKTFKCKVNSG 104
>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody,
domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP:
b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H
Length = 256
Score = 25.4 bits (56), Expect = 8.5
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 22 VRKGGTITLECKASG 36
V+ G ++ L CKASG
Sbjct: 12 VKPGASVKLSCKASG 26
>2i24_N NEW antigen receptor PBLA8; immunoglobulin fold, immune system;
1.35A {Ginglymostoma cirratum} PDB: 2i25_N 2i27_N
2i26_N
Length = 121
Score = 24.6 bits (54), Expect = 8.8
Identities = 15/85 (17%), Positives = 29/85 (34%), Gaps = 21/85 (24%)
Query: 20 LTVRKGGTITLECKASGNPVPS--IIWSKKDS----------------SLPSGEKSLEGF 61
+T G ++T+ C + W +K ++ G KS F
Sbjct: 10 ITKETGESLTINCVVRDSRCVLSTGYWYRKPPGSRNEESISDGGRYVETVNRGSKS---F 66
Query: 62 SITLEKVDRHQAGVYQCTATNGVGD 86
S+ + + +G Y+C + G
Sbjct: 67 SLRINDLTVKDSGTYRCKPESRYGS 91
>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen,
beta-turn, immune system; HET: NLE; NMR {Rattus
norvegicus} SCOP: b.1.1.1 b.1.1.1
Length = 257
Score = 25.1 bits (55), Expect = 10.0
Identities = 14/64 (21%), Positives = 22/64 (34%), Gaps = 20/64 (31%)
Query: 22 VRKGGTITLECKASGNPVPS------------------IIWSKKDSSLPSGEKSLEGFSI 63
VR T++L C SG + S +W ++ S KS SI
Sbjct: 12 VRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKS--RLSI 69
Query: 64 TLEK 67
+ +
Sbjct: 70 SRDT 73
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.131 0.377
Gapped
Lambda K H
0.267 0.0534 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,181,705
Number of extensions: 121659
Number of successful extensions: 1419
Number of sequences better than 10.0: 1
Number of HSP's gapped: 989
Number of HSP's successfully gapped: 745
Length of query: 147
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 62
Effective length of database: 4,328,508
Effective search space: 268367496
Effective search space used: 268367496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.6 bits)