BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7618
(560 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
pdb|3B6U|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
Length = 372
Score = 186 bits (472), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 106/216 (49%), Positives = 142/216 (65%), Gaps = 9/216 (4%)
Query: 284 KRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAK--LTLPCKGLRSVTCQSVEEIENC 341
+ + +V YLE+YQ +IRDLL+ + + K + + K L S +SV+EIE+
Sbjct: 147 QNQQYLVRASYLEIYQEEIRDLLSKDQTKRLELKERPDTGVYVKDLSSFVTKSVKEIEHV 206
Query: 342 RKKGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSKTG----KALIHSKLNLVDLAGSEC 397
G ++R +T N++SSRSHAIF++T++ S+ G + KLNLVDLAGSE
Sbjct: 207 MNVGNQNRSVGATNMNEHSSRSHAIFVITIEC--SEVGLDGENHIRVGKLNLVDLAGSER 264
Query: 398 LQKSNATDIRLKECCEINLSLLAVNKVISSTVAGK-TYIPYRDSLLTQLLQDSFGGNAKT 456
K+ A RLKE +INLSL A+ VIS+ V GK T+IPYRDS LT+LLQDS GGNAKT
Sbjct: 265 QAKTGAQGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNAKT 324
Query: 457 LMIANIGPAASTYKETLVTLEYANRAKKIKNAPNIN 492
+M+AN+GPA+ +ETL TL YANRAK IKN P +N
Sbjct: 325 VMVANVGPASYNVEETLTTLRYANRAKNIKNKPRVN 360
Score = 136 bits (343), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 99/156 (63%), Gaps = 11/156 (7%)
Query: 30 ENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGK--ARRFTFDA 87
E+++VVVRCRPMN E+ A + V+ +D +S++ P+ + FTFDA
Sbjct: 21 ESVRVVVRCRPMNGKEKAASYDKVVDVDVKLGQVSVK------NPKGTAHEMPKTFTFDA 74
Query: 88 VYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQME---RGIMQN 144
VY A Q E+Y+ + RP+V+ +L G+N TIFAYGQTGTGKT+TMEG + + RG++ N
Sbjct: 75 VYDWNAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTMEGIRGDPEKRGVIPN 134
Query: 145 AFRQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLN 180
+F IF + + + +V YLE+YQ +IRDLL+
Sbjct: 135 SFDHIFTHISRSQNQQYLVRASYLEIYQEEIRDLLS 170
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
Length = 350
Score = 174 bits (440), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 105/227 (46%), Positives = 138/227 (60%), Gaps = 3/227 (1%)
Query: 268 IENCRKKGYKSRKTAKKRHKCIVECCYLELYQGKIRDLL-NVSRPTLFDTKAKLTLPCKG 326
I N K + + ++ +V YLELY +IRDL+ N ++ L + K + + G
Sbjct: 117 IPNSFKHLFDAINSSSSNQNFLVIGSYLELYNEEIRDLIKNNTKLPLKEDKTR-GIYVDG 175
Query: 327 LRSVTCQSVEEIENCRKKGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIH-S 385
L + E+ KG+ +R A+T ND SSRSH+IF+V ++ K +I
Sbjct: 176 LSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVIENKEVIRVG 235
Query: 386 KLNLVDLAGSECLQKSNATDIRLKECCEINLSLLAVNKVISSTVAGKTYIPYRDSLLTQL 445
KLNLVDLAGSE K+ AT L E +INLSL A+ VIS V G T+IPYRDS LT+L
Sbjct: 236 KLNLVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGATHIPYRDSKLTRL 295
Query: 446 LQDSFGGNAKTLMIANIGPAASTYKETLVTLEYANRAKKIKNAPNIN 492
LQDS GGN+KTLM ANI PA++ Y ET+ TL YA+RAK+IKN P IN
Sbjct: 296 LQDSLGGNSKTLMCANISPASTNYDETMSTLRYADRAKQIKNKPRIN 342
Score = 125 bits (313), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 61/152 (40%), Positives = 90/152 (59%), Gaps = 2/152 (1%)
Query: 30 ENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKA-RRFTFDAV 88
+NIKV+VRCRP+N E + + N+I++D + + Q K R FTFDAV
Sbjct: 4 DNIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFDAV 63
Query: 89 YGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQMERGIMQNAFRQ 148
Y + I++ S +P+++ +L G+N TIFAYGQTG GKT+TM G++ E G + N+F+
Sbjct: 64 YDQTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEPGAIPNSFKH 123
Query: 149 IFD-FKQKEKRHKCIVECCYLELYQGKIRDLL 179
+FD +V YLELY +IRDL+
Sbjct: 124 LFDAINSSSSNQNFLVIGSYLELYNEEIRDLI 155
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|C Chain C, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 373
Score = 161 bits (407), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 93/211 (44%), Positives = 131/211 (62%), Gaps = 8/211 (3%)
Query: 290 VECCYLELYQGKIRDLLNVS-----RPTLFD-TKAKLTLPCKGLRSVTCQSVEEIENCRK 343
V+ LE+Y ++ DLLN S R +FD + K + KGL +T + +E+ +
Sbjct: 156 VKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILE 215
Query: 344 KGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSKT-GKALIH-SKLNLVDLAGSECLQKS 401
KG R TA+T N YSSRSH++F VT+ + + G+ L+ KLNLVDLAGSE + +S
Sbjct: 216 KGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRS 275
Query: 402 NATDIRLKECCEINLSLLAVNKVISSTVAGKTYIPYRDSLLTQLLQDSFGGNAKTLMIAN 461
A D R +E IN SLL + +VI++ V ++PYR+S LT++LQDS GG +T +IA
Sbjct: 276 GAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESKLTRILQDSLGGRTRTSIIAT 335
Query: 462 IGPAASTYKETLVTLEYANRAKKIKNAPNIN 492
I PA+ +ETL TLEYA+RAK I N P +N
Sbjct: 336 ISPASLNLEETLSTLEYAHRAKNILNKPEVN 366
Score = 115 bits (288), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 67/174 (38%), Positives = 98/174 (56%), Gaps = 21/174 (12%)
Query: 31 NIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYG 90
NI+VVVR RP N+ ERKA ++++ D +K +S++ T L + K +TFD V+G
Sbjct: 18 NIQVVVRVRPFNLAERKASAHSIVESDPVRKEVSVR--TGGLADKSSRKT--YTFDMVFG 73
Query: 91 MQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQMER----------- 139
Q ++Y + V P+++ ++ GYN TIFAYGQTGTGKTFTMEG +
Sbjct: 74 ASTKQIDVYRSVVAPILDEVIMGYNATIFAYGQTGTGKTFTMEGERSPNEEYCWEEDPLA 133
Query: 140 GIMQNAFRQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVS-----RPTLFD 188
GI+ QIF+ K + + V+ LE+Y ++ DLLN S R +FD
Sbjct: 134 GIIPRTLHQIFE-KLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFD 186
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 160 bits (406), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 99/238 (41%), Positives = 137/238 (57%), Gaps = 29/238 (12%)
Query: 284 KRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTK--AKLTLPCKGLRSVTCQSVEEIENC 341
+ + +V YLE+YQ +IRDLL+ + K + + K L S ++V+EIE+
Sbjct: 147 QNQQYLVRASYLEIYQEEIRDLLSKEPGKRLELKENPETGVYIKDLSSFVTKNVKEIEHV 206
Query: 342 RKKGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSKT-GKALIH-SKLNLVDLAGSECLQ 399
G ++R ST+ N+ SSRSHAIFI+T++ + G+ I KLNLVDLAGSE
Sbjct: 207 MNLGNQTRAVGSTHMNEVSSRSHAIFIITVECSERGSDGQDHIRVGKLNLVDLAGSERQN 266
Query: 400 KSNATDI------------------------RLKECCEINLSLLAVNKVISSTVAGK-TY 434
K+ R KE +INLSL A+ VI++ + T+
Sbjct: 267 KAGPNTAGGAATPSSGGGGGGGGSGGGAGGERPKEASKINLSLSALGNVIAALAGNRSTH 326
Query: 435 IPYRDSLLTQLLQDSFGGNAKTLMIANIGPAASTYKETLVTLEYANRAKKIKNAPNIN 492
IPYRDS LT+LLQDS GGNAKT+M+A +GPA+ +Y E+L TL +ANRAK IKN P +N
Sbjct: 327 IPYRDSKLTRLLQDSLGGNAKTIMVATLGPASHSYDESLSTLRFANRAKNIKNKPRVN 384
Score = 134 bits (338), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 101/156 (64%), Gaps = 11/156 (7%)
Query: 30 ENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQ-PGK-ARRFTFDA 87
E +KVV RCRP++ E A E ++ +D ++++ PR PG+ + FTFDA
Sbjct: 21 EALKVVARCRPLSRKEEAAGHEQILTMDVKLGQVTLR------NPRAAPGELPKTFTFDA 74
Query: 88 VYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQME---RGIMQN 144
VY + Q ++Y+ +VRP+++ +L G+N T+FAYGQTGTGKT+TM+G+ +E RG++ N
Sbjct: 75 VYDASSKQADLYDETVRPLIDSVLQGFNGTVFAYGQTGTGKTYTMQGTWVEPELRGVIPN 134
Query: 145 AFRQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLN 180
AF IF + + + +V YLE+YQ +IRDLL+
Sbjct: 135 AFEHIFTHISRSQNQQYLVRASYLEIYQEEIRDLLS 170
>pdb|4A28|A Chain A, Eg5-2
pdb|4A28|B Chain B, Eg5-2
Length = 368
Score = 160 bits (405), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 93/211 (44%), Positives = 131/211 (62%), Gaps = 8/211 (3%)
Query: 290 VECCYLELYQGKIRDLLNVS-----RPTLFD-TKAKLTLPCKGLRSVTCQSVEEIENCRK 343
V+ LE+Y ++ DLLN S R +FD + K + KGL +T + +E+ +
Sbjct: 156 VKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILE 215
Query: 344 KGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSKT-GKALIH-SKLNLVDLAGSECLQKS 401
KG R TA+T N YSSRSH++F VT+ + + G+ L+ KLNLVDLAGSE + +S
Sbjct: 216 KGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRS 275
Query: 402 NATDIRLKECCEINLSLLAVNKVISSTVAGKTYIPYRDSLLTQLLQDSFGGNAKTLMIAN 461
A D R +E IN SLL + +VI++ V ++PYR+S LT++LQDS GG +T +IA
Sbjct: 276 GAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESKLTRILQDSLGGRTRTSIIAT 335
Query: 462 IGPAASTYKETLVTLEYANRAKKIKNAPNIN 492
I PA+ +ETL TLEYA+RAK I N P +N
Sbjct: 336 ISPASLNLEETLSTLEYAHRAKNILNKPEVN 366
Score = 115 bits (288), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 68/174 (39%), Positives = 99/174 (56%), Gaps = 21/174 (12%)
Query: 31 NIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYG 90
NI+VVVRCRP N+ ERKA ++++ D +K +S++ T L + K +TFD V+G
Sbjct: 18 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVR--TGGLADKSSRKT--YTFDMVFG 73
Query: 91 MQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQMER----------- 139
Q ++Y + V P+++ ++ GYN TIFAYGQTGTGKTFTMEG +
Sbjct: 74 ASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLD 133
Query: 140 GIMQNAFRQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVS-----RPTLFD 188
GI+ QIF+ K + + V+ LE+Y ++ DLLN S R +FD
Sbjct: 134 GIIPRTLHQIFE-KLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFD 186
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
pdb|1X88|B Chain B, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
Length = 359
Score = 160 bits (405), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 93/211 (44%), Positives = 131/211 (62%), Gaps = 8/211 (3%)
Query: 290 VECCYLELYQGKIRDLLNVS-----RPTLFD-TKAKLTLPCKGLRSVTCQSVEEIENCRK 343
V+ LE+Y ++ DLLN S R +FD + K + KGL +T + +E+ +
Sbjct: 147 VKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILE 206
Query: 344 KGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSKT-GKALIH-SKLNLVDLAGSECLQKS 401
KG R TA+T N YSSRSH++F VT+ + + G+ L+ KLNLVDLAGSE + +S
Sbjct: 207 KGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRS 266
Query: 402 NATDIRLKECCEINLSLLAVNKVISSTVAGKTYIPYRDSLLTQLLQDSFGGNAKTLMIAN 461
A D R +E IN SLL + +VI++ V ++PYR+S LT++LQDS GG +T +IA
Sbjct: 267 GAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESKLTRILQDSLGGRTRTSIIAT 326
Query: 462 IGPAASTYKETLVTLEYANRAKKIKNAPNIN 492
I PA+ +ETL TLEYA+RAK I N P +N
Sbjct: 327 ISPASLNLEETLSTLEYAHRAKNILNKPEVN 357
Score = 115 bits (287), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 68/174 (39%), Positives = 99/174 (56%), Gaps = 21/174 (12%)
Query: 31 NIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYG 90
NI+VVVRCRP N+ ERKA ++++ D +K +S++ T L + K +TFD V+G
Sbjct: 9 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVR--TGGLADKSSRKT--YTFDMVFG 64
Query: 91 MQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQMER----------- 139
Q ++Y + V P+++ ++ GYN TIFAYGQTGTGKTFTMEG +
Sbjct: 65 ASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLA 124
Query: 140 GIMQNAFRQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVS-----RPTLFD 188
GI+ QIF+ K + + V+ LE+Y ++ DLLN S R +FD
Sbjct: 125 GIIPRTLHQIFE-KLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFD 177
>pdb|4A1Z|A Chain A, Eg5-1
pdb|4A1Z|B Chain B, Eg5-1
Length = 368
Score = 160 bits (405), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 93/211 (44%), Positives = 131/211 (62%), Gaps = 8/211 (3%)
Query: 290 VECCYLELYQGKIRDLLNVS-----RPTLFD-TKAKLTLPCKGLRSVTCQSVEEIENCRK 343
V+ LE+Y ++ DLLN S R +FD + K + KGL +T + +E+ +
Sbjct: 156 VKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILE 215
Query: 344 KGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSKT-GKALIH-SKLNLVDLAGSECLQKS 401
KG R TA+T N YSSRSH++F VT+ + + G+ L+ KLNLVDLAGSE + +S
Sbjct: 216 KGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRS 275
Query: 402 NATDIRLKECCEINLSLLAVNKVISSTVAGKTYIPYRDSLLTQLLQDSFGGNAKTLMIAN 461
A D R +E IN SLL + +VI++ V ++PYR+S LT++LQDS GG +T +IA
Sbjct: 276 GAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESKLTRILQDSLGGRTRTSIIAT 335
Query: 462 IGPAASTYKETLVTLEYANRAKKIKNAPNIN 492
I PA+ +ETL TLEYA+RAK I N P +N
Sbjct: 336 ISPASLNLEETLSTLEYAHRAKNILNKPEVN 366
Score = 115 bits (288), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 68/174 (39%), Positives = 99/174 (56%), Gaps = 21/174 (12%)
Query: 31 NIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYG 90
NI+VVVRCRP N+ ERKA ++++ D +K +S++ T L + K +TFD V+G
Sbjct: 18 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVR--TGGLADKSSRKT--YTFDMVFG 73
Query: 91 MQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQMER----------- 139
Q ++Y + V P+++ ++ GYN TIFAYGQTGTGKTFTMEG +
Sbjct: 74 ASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEVPLA 133
Query: 140 GIMQNAFRQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVS-----RPTLFD 188
GI+ QIF+ K + + V+ LE+Y ++ DLLN S R +FD
Sbjct: 134 GIIPRTLHQIFE-KLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFD 186
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3HQD|B Chain B, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3KEN|A Chain A, Human Eg5 In Complex With S-Trityl-L-Cysteine
Length = 369
Score = 160 bits (405), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 93/211 (44%), Positives = 131/211 (62%), Gaps = 8/211 (3%)
Query: 290 VECCYLELYQGKIRDLLNVS-----RPTLFD-TKAKLTLPCKGLRSVTCQSVEEIENCRK 343
V+ LE+Y ++ DLLN S R +FD + K + KGL +T + +E+ +
Sbjct: 156 VKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILE 215
Query: 344 KGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSKT-GKALIH-SKLNLVDLAGSECLQKS 401
KG R TA+T N YSSRSH++F VT+ + + G+ L+ KLNLVDLAGSE + +S
Sbjct: 216 KGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRS 275
Query: 402 NATDIRLKECCEINLSLLAVNKVISSTVAGKTYIPYRDSLLTQLLQDSFGGNAKTLMIAN 461
A D R +E IN SLL + +VI++ V ++PYR+S LT++LQDS GG +T +IA
Sbjct: 276 GAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESKLTRILQDSLGGRTRTSIIAT 335
Query: 462 IGPAASTYKETLVTLEYANRAKKIKNAPNIN 492
I PA+ +ETL TLEYA+RAK I N P +N
Sbjct: 336 ISPASLNLEETLSTLEYAHRAKNILNKPEVN 366
Score = 115 bits (288), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 68/174 (39%), Positives = 99/174 (56%), Gaps = 21/174 (12%)
Query: 31 NIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYG 90
NI+VVVRCRP N+ ERKA ++++ D +K +S++ T L + K +TFD V+G
Sbjct: 18 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVR--TGGLADKSSRKT--YTFDMVFG 73
Query: 91 MQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQMER----------- 139
Q ++Y + V P+++ ++ GYN TIFAYGQTGTGKTFTMEG +
Sbjct: 74 ASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLA 133
Query: 140 GIMQNAFRQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVS-----RPTLFD 188
GI+ QIF+ K + + V+ LE+Y ++ DLLN S R +FD
Sbjct: 134 GIIPRTLHQIFE-KLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFD 186
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1YRS|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|1YRS|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2FME|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2FME|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2GM1|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|D Chain D, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|E Chain E, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2G1Q|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2G1Q|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2PG2|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2PG2|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2UYI|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYI|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYM|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|2UYM|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|3K5E|A Chain A, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K5E|B Chain B, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K3B|A Chain A, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3K3B|B Chain B, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3L9H|A Chain A, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|3L9H|B Chain B, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|2X7C|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7C|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7D|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7D|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7E|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2X7E|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2WOG|A Chain A, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|B Chain B, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|C Chain C, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2X2R|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2XAE|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|4A50|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
2-amino-5-(3-methylphenyl)-5,5-diphenylpentanoic Acid
pdb|4A51|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|D Chain D, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|E Chain E, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|F Chain F, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|G Chain G, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A5Y|A Chain A, Eg5-Inhibitor Complex
pdb|4A5Y|B Chain B, Eg5-Inhibitor Complex
pdb|4A5Y|C Chain C, Eg5-Inhibitor Complex
Length = 368
Score = 160 bits (405), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 93/211 (44%), Positives = 131/211 (62%), Gaps = 8/211 (3%)
Query: 290 VECCYLELYQGKIRDLLNVS-----RPTLFD-TKAKLTLPCKGLRSVTCQSVEEIENCRK 343
V+ LE+Y ++ DLLN S R +FD + K + KGL +T + +E+ +
Sbjct: 156 VKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILE 215
Query: 344 KGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSKT-GKALIH-SKLNLVDLAGSECLQKS 401
KG R TA+T N YSSRSH++F VT+ + + G+ L+ KLNLVDLAGSE + +S
Sbjct: 216 KGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRS 275
Query: 402 NATDIRLKECCEINLSLLAVNKVISSTVAGKTYIPYRDSLLTQLLQDSFGGNAKTLMIAN 461
A D R +E IN SLL + +VI++ V ++PYR+S LT++LQDS GG +T +IA
Sbjct: 276 GAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESKLTRILQDSLGGRTRTSIIAT 335
Query: 462 IGPAASTYKETLVTLEYANRAKKIKNAPNIN 492
I PA+ +ETL TLEYA+RAK I N P +N
Sbjct: 336 ISPASLNLEETLSTLEYAHRAKNILNKPEVN 366
Score = 115 bits (288), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 68/174 (39%), Positives = 99/174 (56%), Gaps = 21/174 (12%)
Query: 31 NIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYG 90
NI+VVVRCRP N+ ERKA ++++ D +K +S++ T L + K +TFD V+G
Sbjct: 18 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVR--TGGLADKSSRKT--YTFDMVFG 73
Query: 91 MQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQMER----------- 139
Q ++Y + V P+++ ++ GYN TIFAYGQTGTGKTFTMEG +
Sbjct: 74 ASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLA 133
Query: 140 GIMQNAFRQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVS-----RPTLFD 188
GI+ QIF+ K + + V+ LE+Y ++ DLLN S R +FD
Sbjct: 134 GIIPRTLHQIFE-KLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFD 186
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|B Chain B, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|C Chain C, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|D Chain D, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
Length = 370
Score = 160 bits (404), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 93/211 (44%), Positives = 131/211 (62%), Gaps = 8/211 (3%)
Query: 290 VECCYLELYQGKIRDLLNVS-----RPTLFD-TKAKLTLPCKGLRSVTCQSVEEIENCRK 343
V+ LE+Y ++ DLLN S R +FD + K + KGL +T + +E+ +
Sbjct: 158 VKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILE 217
Query: 344 KGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSKT-GKALIH-SKLNLVDLAGSECLQKS 401
KG R TA+T N YSSRSH++F VT+ + + G+ L+ KLNLVDLAGSE + +S
Sbjct: 218 KGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRS 277
Query: 402 NATDIRLKECCEINLSLLAVNKVISSTVAGKTYIPYRDSLLTQLLQDSFGGNAKTLMIAN 461
A D R +E IN SLL + +VI++ V ++PYR+S LT++LQDS GG +T +IA
Sbjct: 278 GAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESKLTRILQDSLGGRTRTSIIAT 337
Query: 462 IGPAASTYKETLVTLEYANRAKKIKNAPNIN 492
I PA+ +ETL TLEYA+RAK I N P +N
Sbjct: 338 ISPASLNLEETLSTLEYAHRAKNILNKPEVN 368
Score = 115 bits (287), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 68/174 (39%), Positives = 99/174 (56%), Gaps = 21/174 (12%)
Query: 31 NIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYG 90
NI+VVVRCRP N+ ERKA ++++ D +K +S++ T L + K +TFD V+G
Sbjct: 20 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVR--TGGLADKSSRKT--YTFDMVFG 75
Query: 91 MQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQMER----------- 139
Q ++Y + V P+++ ++ GYN TIFAYGQTGTGKTFTMEG +
Sbjct: 76 ASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLA 135
Query: 140 GIMQNAFRQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVS-----RPTLFD 188
GI+ QIF+ K + + V+ LE+Y ++ DLLN S R +FD
Sbjct: 136 GIIPRTLHQIFE-KLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFD 188
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|1Q0B|B Chain B, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|2FKY|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FKY|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FL2|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL2|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL6|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2FL6|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2IEH|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2IEH|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2Q2Y|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Y|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Z|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|2Q2Z|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|3CJO|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 30
pdb|3CJO|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 30
Length = 367
Score = 160 bits (404), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 93/211 (44%), Positives = 131/211 (62%), Gaps = 8/211 (3%)
Query: 290 VECCYLELYQGKIRDLLNVS-----RPTLFD-TKAKLTLPCKGLRSVTCQSVEEIENCRK 343
V+ LE+Y ++ DLLN S R +FD + K + KGL +T + +E+ +
Sbjct: 155 VKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILE 214
Query: 344 KGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSKT-GKALIH-SKLNLVDLAGSECLQKS 401
KG R TA+T N YSSRSH++F VT+ + + G+ L+ KLNLVDLAGSE + +S
Sbjct: 215 KGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRS 274
Query: 402 NATDIRLKECCEINLSLLAVNKVISSTVAGKTYIPYRDSLLTQLLQDSFGGNAKTLMIAN 461
A D R +E IN SLL + +VI++ V ++PYR+S LT++LQDS GG +T +IA
Sbjct: 275 GAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESKLTRILQDSLGGRTRTSIIAT 334
Query: 462 IGPAASTYKETLVTLEYANRAKKIKNAPNIN 492
I PA+ +ETL TLEYA+RAK I N P +N
Sbjct: 335 ISPASLNLEETLSTLEYAHRAKNILNKPEVN 365
Score = 115 bits (287), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 68/174 (39%), Positives = 99/174 (56%), Gaps = 21/174 (12%)
Query: 31 NIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYG 90
NI+VVVRCRP N+ ERKA ++++ D +K +S++ T L + K +TFD V+G
Sbjct: 17 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVR--TGGLADKSSRKT--YTFDMVFG 72
Query: 91 MQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQMER----------- 139
Q ++Y + V P+++ ++ GYN TIFAYGQTGTGKTFTMEG +
Sbjct: 73 ASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLA 132
Query: 140 GIMQNAFRQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVS-----RPTLFD 188
GI+ QIF+ K + + V+ LE+Y ++ DLLN S R +FD
Sbjct: 133 GIIPRTLHQIFE-KLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFD 185
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site
Length = 348
Score = 156 bits (394), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 92/208 (44%), Positives = 129/208 (62%), Gaps = 8/208 (3%)
Query: 290 VECCYLELYQGKIRDLLNVS-----RPTLFD-TKAKLTLPCKGLRSVTCQSVEEIENCRK 343
V+ LE+Y ++ DLLN S R +FD + K + KGL +T + +E+ +
Sbjct: 141 VKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILE 200
Query: 344 KGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSKT-GKALIH-SKLNLVDLAGSECLQKS 401
KG R TA+T N YSSRSH++F VT+ + + G+ L+ KLNLVDLAGSE + +S
Sbjct: 201 KGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRS 260
Query: 402 NATDIRLKECCEINLSLLAVNKVISSTVAGKTYIPYRDSLLTQLLQDSFGGNAKTLMIAN 461
A D R +E IN SLL + +VI++ V ++PYR+S LT++LQDS GG +T +IA
Sbjct: 261 GAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESKLTRILQDSLGGRTRTSIIAT 320
Query: 462 IGPAASTYKETLVTLEYANRAKKIKNAP 489
I PA+ +ETL TLEYA+RAK I N P
Sbjct: 321 ISPASLNLEETLSTLEYAHRAKNILNKP 348
Score = 115 bits (287), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 68/174 (39%), Positives = 99/174 (56%), Gaps = 21/174 (12%)
Query: 31 NIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYG 90
NI+VVVRCRP N+ ERKA ++++ D +K +S++ T L + K +TFD V+G
Sbjct: 3 NIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVR--TGGLADKSSRKT--YTFDMVFG 58
Query: 91 MQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQMER----------- 139
Q ++Y + V P+++ ++ GYN TIFAYGQTGTGKTFTMEG +
Sbjct: 59 ASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLA 118
Query: 140 GIMQNAFRQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVS-----RPTLFD 188
GI+ QIF+ K + + V+ LE+Y ++ DLLN S R +FD
Sbjct: 119 GIIPRTLHQIFE-KLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFD 171
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|B Chain B, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|C Chain C, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
Length = 354
Score = 153 bits (386), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 96/208 (46%), Positives = 127/208 (61%), Gaps = 16/208 (7%)
Query: 290 VECCYLELYQGKIRDLLNV--SRPTLFDTKAKLTLP-CKGLRSVTCQSVEEIENCRKKGY 346
VE Y+E+Y K+RDLL+ SR TL + + P GL + S ++IE+ +G
Sbjct: 143 VEVSYMEIYNEKVRDLLDPKGSRQTLKVREHSVLGPYVDGLSKLAVTSYKDIESLMSEGN 202
Query: 347 KSRKTASTYFNDYSSRSHAIFIVTL-----KVLNSKTGKALIHSKLNLVDLAGSECLQKS 401
KSR A+T N+ SSRSHA+F +TL V + +G+ + KL+LVDLAGSE K+
Sbjct: 203 KSRTVAATNMNEESSRSHAVFKITLTHTLYDVKSGTSGEKV--GKLSLVDLAGSERATKT 260
Query: 402 NATDIRLKECCEINLSLLAVNKVISSTV---AGKT---YIPYRDSLLTQLLQDSFGGNAK 455
A RLKE IN SL + VIS+ AGK ++PYRDS+LT LL+DS GGN+K
Sbjct: 261 GAAGDRLKEGSNINKSLTTLGLVISALADQSAGKNKNKFVPYRDSVLTWLLKDSLGGNSK 320
Query: 456 TLMIANIGPAASTYKETLVTLEYANRAK 483
T M+A + PAA Y ETL TL YA+RAK
Sbjct: 321 TAMVATVSPAADNYDETLSTLRYADRAK 348
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 86/167 (51%), Gaps = 13/167 (7%)
Query: 32 IKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFD-AVYG 90
+KV VR RPMN E H + V+ +D K L+ +T+ K G+ + F +D +
Sbjct: 3 VKVAVRIRPMNRRETDLHTKCVVDVDANKVILN-PVNTNLSKGDARGQPKVFAYDHCFWS 61
Query: 91 MQATQTEIYENS-------VRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQMERGIMQ 143
M + E Y ++ + GYN IFAYGQTG+GK++TM G+ + G++
Sbjct: 62 MDESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQPGLIP 121
Query: 144 NAFRQIFDFKQKE--KRHKCIVECCYLELYQGKIRDLLNV--SRPTL 186
+F+ QKE + VE Y+E+Y K+RDLL+ SR TL
Sbjct: 122 RLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLDPKGSRQTL 168
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp
Length = 373
Score = 149 bits (375), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 88/208 (42%), Positives = 128/208 (61%), Gaps = 7/208 (3%)
Query: 292 CCYLELYQGKIRDLLNVSRPT---LFD-TKAKLTLPCKGLRSVTCQSVEEIENCRKKGYK 347
YLELY ++ DLL+ T +FD + K ++ +GL + S +++ +KG +
Sbjct: 161 ISYLELYNEELCDLLSTDDTTKIRIFDDSTKKGSVIIQGLEEIPVHSKDDVYKLLEKGKE 220
Query: 348 SRKTASTYFNDYSSRSHAIFIVTLKVL-NSKTGKALIH-SKLNLVDLAGSECLQKS-NAT 404
RKTA+T N SSRSH +F + + + N G+ ++ KLNLVDLAGSE + K+ N
Sbjct: 221 RRKTATTLMNAQSSRSHTVFSIVVHIRENGIEGEDMLKIGKLNLVDLAGSENVSKAGNEK 280
Query: 405 DIRLKECCEINLSLLAVNKVISSTVAGKTYIPYRDSLLTQLLQDSFGGNAKTLMIANIGP 464
IR++E IN SLL + +VI++ V ++PYR+S LT+LLQ+S GG KT +IA I P
Sbjct: 281 GIRVRETVNINQSLLTLGRVITALVDRAPHVPYRESKLTRLLQESLGGRTKTSIIATISP 340
Query: 465 AASTYKETLVTLEYANRAKKIKNAPNIN 492
+ETL TLEYA+RAK I+N P +N
Sbjct: 341 GHKDIEETLSTLEYAHRAKNIQNKPEVN 368
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 92/179 (51%), Gaps = 24/179 (13%)
Query: 29 DENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAV 88
++NI+V VR RP+N ER V+ + ++ ++ +L ++FTFD
Sbjct: 22 NQNIQVYVRVRPLNSRERCIRSAEVVDVVGPREVVTRHTLDSKL-------TKKFTFDRS 74
Query: 89 YGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQMER--------- 139
+G ++ Q ++Y V P++ +L+GYN T+FAYGQTGTGKT TM G++
Sbjct: 75 FGPESKQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDS 134
Query: 140 --GIMQNAFRQIFD-FKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPT---LFDTKAK 192
GI+ A +FD + E + + YLELY ++ DLL+ T +FD K
Sbjct: 135 DIGIIPRALSHLFDELRMMEVEYT--MRISYLELYNEELCDLLSTDDTTKIRIFDDSTK 191
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 145 bits (367), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 86/210 (40%), Positives = 129/210 (61%), Gaps = 15/210 (7%)
Query: 288 CIVECCYLELYQGKIRDLLNV---SRPTLFDTKAKLTLPCKGLRSVTCQSVEEIENCRKK 344
C+V YLE+Y+ + RDLL V SR + + G++ V + ++E+ + +
Sbjct: 136 CLVHVSYLEVYKEEFRDLLEVGTASRDIQLREDERGNVVLCGVKEVDVEGLDEVLSLLEM 195
Query: 345 GYKSRKTASTYFNDYSSRSHAIFIVTL--------KVLNSKTGKALIHSKLNLVDLAGSE 396
G +R T +T+ N SSRSH +F VTL ++ G+ L+ SK + VDLAGSE
Sbjct: 196 GNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLPRPAPGQLLV-SKFHFVDLAGSE 254
Query: 397 CLQKSNATDIRLKECCEINLSLLAVNKVISSTVAGK---TYIPYRDSLLTQLLQDSFGGN 453
+ K+ +T RLKE +IN SLLA+ VIS+ + ++IPYRDS +T++L+DS GGN
Sbjct: 255 RVLKTGSTGERLKESIQINSSLLALGNVISALGDPQRRGSHIPYRDSKITRILKDSLGGN 314
Query: 454 AKTLMIANIGPAASTYKETLVTLEYANRAK 483
AKT+MIA + P++S + ETL TL YA+RA+
Sbjct: 315 AKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
Score = 92.0 bits (227), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 82/161 (50%), Gaps = 18/161 (11%)
Query: 28 QDENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDA 87
++ ++V +R RP+ +P+ H + CL ++ R+ G+ R F F
Sbjct: 9 EEAPVRVALRVRPL-LPKELLH--------GHQSCLQVEPGLGRVTL---GRDRHFGFHV 56
Query: 88 VYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQM------ERGI 141
V A Q +Y+ V+P++ G+N T+FAYGQTG+GKT+TM + + E+GI
Sbjct: 57 VLAEDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGI 116
Query: 142 MQNAFRQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVS 182
+ A + F + C+V YLE+Y+ + RDLL V
Sbjct: 117 VPRAMAEAFKLIDENDLLDCLVHVSYLEVYKEEFRDLLEVG 157
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 142 bits (357), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 92/227 (40%), Positives = 130/227 (57%), Gaps = 12/227 (5%)
Query: 290 VECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLP-CKGLRSVTCQSVEEIENCRKKGYKS 348
++ Y E+Y KIRDLL+VS+ L + K +P KG S E++ ++G +
Sbjct: 137 IKVSYYEIYMDKIRDLLDVSKVNLSVHEDKNRVPYVKGATERFVSSPEDVFEVIEEGKSN 196
Query: 349 RKTASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIHSKLNLVDLAGSECLQKSNATDIRL 408
R A T N++SSRSH++F++ +K N + K L KL LVDLAGSE + K+ A L
Sbjct: 197 RHIAVTNMNEHSSRSHSVFLINVKQENLENQKKL-SGKLYLVDLAGSEKVSKTGAEGTVL 255
Query: 409 KECCEINLSLLAVNKVISSTVAG-KTYIPYRDSLLTQLLQDSFGGNAKTLMIANIGPAAS 467
E IN SL A+ VIS+ G KT+IPYRDS LT++LQ+S GGNA+T ++ PA+
Sbjct: 256 DEAKNINKSLSALGNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIVICCSPASF 315
Query: 468 TYKETLVTLEYANRAKKIKNAPNINFYREDRCHNEEKMREKYKKALE 514
ET TL++ RAK +KN C NEE E++K+ E
Sbjct: 316 NESETKSTLDFGRRAKTVKNVV---------CVNEELTAEEWKRRYE 353
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/164 (37%), Positives = 91/164 (55%), Gaps = 19/164 (11%)
Query: 29 DENIKVVVRCRPMNVPERKAHVENVIKI--DTTKKCLSIQYSTDRLKPRQPGKARRFTFD 86
+++IKVV R RP+N E KA + V+K + + C+SI GK + FD
Sbjct: 10 EDSIKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISI-----------AGKV--YLFD 56
Query: 87 AVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTME---GSQMERGIMQ 143
V+ A+Q ++Y + + +V +L GYN TIFAYGQT +GKT TME G +++GI+
Sbjct: 57 KVFKPNASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIP 116
Query: 144 NAFRQIFD-FKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTL 186
IF+ E + ++ Y E+Y KIRDLL+VS+ L
Sbjct: 117 RIVNDIFNHIYAMEVNLEFHIKVSYYEIYMDKIRDLLDVSKVNL 160
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase
Mechanism And Interactions With Microtubules
Length = 355
Score = 141 bits (356), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 84/205 (40%), Positives = 123/205 (60%), Gaps = 3/205 (1%)
Query: 290 VECCYLELYQGKIRDLLNVSRPTL-FDTKAKLTLPCKGLRSVTCQSVEEIENCRKKGYKS 348
V Y+E+Y +IRDLL L + + KGL + SV+E+ ++G +
Sbjct: 134 VRVSYMEIYMERIRDLLAPQNDNLPVHEEKNRGVYVKGLLEIYVSSVQEVYEVMRRGGNA 193
Query: 349 RKTASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIHSKLNLVDLAGSECLQKSNATDIRL 408
R A+T N SSRSH+IF++T+ N +TG A +L LVDLAGSE + K+ A+ L
Sbjct: 194 RAVAATNMNQESSRSHSIFVITITQKNVETGSAK-SGQLFLVDLAGSEKVGKTGASGQTL 252
Query: 409 KECCEINLSLLAVNKVISSTVAGKT-YIPYRDSLLTQLLQDSFGGNAKTLMIANIGPAAS 467
+E +IN SL A+ VI++ GK+ ++PYRDS LT++LQ+S GGN++T +I N P++
Sbjct: 253 EEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLTRILQESLGGNSRTTLIINCSPSSY 312
Query: 468 TYKETLVTLEYANRAKKIKNAPNIN 492
ETL TL + RAK IKN +N
Sbjct: 313 NDAETLSTLRFGMRAKSIKNKAKVN 337
Score = 95.9 bits (237), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 84/154 (54%), Gaps = 15/154 (9%)
Query: 31 NIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYG 90
+IKVV R RP N E ++ + ++ C + D + + FTFD V+
Sbjct: 7 SIKVVARFRPQNRVEIESGGQPIVTFQGPDTC-----TVDSKEAQG-----SFTFDRVFD 56
Query: 91 MQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQME----RGIMQNAF 146
M Q++I++ S++P V+ +L+GYN T+FAYGQTG GK++TM G+ ++ RG++
Sbjct: 57 MSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIV 116
Query: 147 RQIF-DFKQKEKRHKCIVECCYLELYQGKIRDLL 179
QIF + V Y+E+Y +IRDLL
Sbjct: 117 EQIFTSILSSAANIEYTVRVSYMEIYMERIRDLL 150
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 220 VECCYLELYQGKIRDLLNVSRPTL-FDTKAKLTLPCKGLRSVTCQSVEEIENCRKKGYKS 278
V Y+E+Y +IRDLL L + + KGL + SV+E+ ++G +
Sbjct: 134 VRVSYMEIYMERIRDLLAPQNDNLPVHEEKNRGVYVKGLLEIYVSSVQEVYEVMRRGGNA 193
Query: 279 RKTA 282
R A
Sbjct: 194 RAVA 197
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 140 bits (353), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 85/204 (41%), Positives = 121/204 (59%), Gaps = 2/204 (0%)
Query: 290 VECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLP-CKGLRSVTCQSVEEIENCRKKGYKS 348
++ Y E+Y KIRDLL+VS+ L + K +P KG S +E+ + +G +
Sbjct: 130 IKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERFVCSPDEVMDTIDEGKSN 189
Query: 349 RKTASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIHSKLNLVDLAGSECLQKSNATDIRL 408
R A T N++SSRSH+IF++ +K N++T + L KL LVDLAGSE + K+ A L
Sbjct: 190 RHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKL-SGKLYLVDLAGSEKVSKTGAEGAVL 248
Query: 409 KECCEINLSLLAVNKVISSTVAGKTYIPYRDSLLTQLLQDSFGGNAKTLMIANIGPAAST 468
E IN SL A+ VIS+ G TY+PYRDS +T++LQDS GGN +T ++ P++
Sbjct: 249 DEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYN 308
Query: 469 YKETLVTLEYANRAKKIKNAPNIN 492
ET TL + RAK IKN +N
Sbjct: 309 ESETKSTLLFGQRAKTIKNTVCVN 332
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 81/163 (49%), Gaps = 24/163 (14%)
Query: 31 NIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYG 90
NIKV+ R RP+N E + + K + ++ + FD V+
Sbjct: 8 NIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVI--------------ASKPYAFDRVFQ 53
Query: 91 MQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQME-RG------IMQ 143
+Q ++Y + + +V +L GYN TIFAYGQT +GKT TMEG + G I+Q
Sbjct: 54 SSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQ 113
Query: 144 NAFRQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTL 186
+ F I+ + + H ++ Y E+Y KIRDLL+VS+ L
Sbjct: 114 DIFNYIYSMDENLEFH---IKVSYFEIYLDKIRDLLDVSKTNL 153
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 220 VECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLP-CKGLRSVTCQSVEEIENCRKKGYKS 278
++ Y E+Y KIRDLL+VS+ L + K +P KG S +E+ + +G +
Sbjct: 130 IKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERFVCSPDEVMDTIDEGKSN 189
Query: 279 RKTA 282
R A
Sbjct: 190 RHVA 193
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 140 bits (352), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 85/204 (41%), Positives = 121/204 (59%), Gaps = 2/204 (0%)
Query: 290 VECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLP-CKGLRSVTCQSVEEIENCRKKGYKS 348
++ Y E+Y KIRDLL+VS+ L + K +P KG S +E+ + +G +
Sbjct: 130 IKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERFVCSPDEVMDTIDEGKSN 189
Query: 349 RKTASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIHSKLNLVDLAGSECLQKSNATDIRL 408
R A T N++SSRSH+IF++ +K N++T + L KL LVDLAGSE + K+ A L
Sbjct: 190 RHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKL-SGKLYLVDLAGSEKVSKTGAEGAVL 248
Query: 409 KECCEINLSLLAVNKVISSTVAGKTYIPYRDSLLTQLLQDSFGGNAKTLMIANIGPAAST 468
E IN SL A+ VIS+ G TY+PYRDS +T++LQDS GGN +T ++ P++
Sbjct: 249 DEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYN 308
Query: 469 YKETLVTLEYANRAKKIKNAPNIN 492
ET TL + RAK IKN +N
Sbjct: 309 ESETKSTLLFGQRAKTIKNTVCVN 332
Score = 81.6 bits (200), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 80/163 (49%), Gaps = 24/163 (14%)
Query: 31 NIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYG 90
NIKV+ R RP+N E + V K + ++ + FD V+
Sbjct: 8 NIKVMCRFRPLNESEVNRGDKYVAKFQGEDTVMI--------------ASKPYAFDRVFQ 53
Query: 91 MQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQME-RG------IMQ 143
+Q ++Y + + +V +L GYN TIFAYGQT +GK TMEG + G I+Q
Sbjct: 54 SSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKNHTMEGKLHDPEGMGIIPRIVQ 113
Query: 144 NAFRQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTL 186
+ F I+ + + H ++ Y E+Y KIRDLL+VS+ L
Sbjct: 114 DIFNYIYSMDENLEFH---IKVSYFEIYLDKIRDLLDVSKTNL 153
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 139 bits (350), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 86/213 (40%), Positives = 127/213 (59%), Gaps = 21/213 (9%)
Query: 288 CIVECCYLELYQGKIRDLLNV---SRPTLFDTKAKLTLPCKGLRSVTCQSVEEIENCRKK 344
C+V YLE+Y+ + RDLL V SR + + G++ V + ++E+ + +
Sbjct: 136 CLVHVSYLEVYKEEFRDLLEVGTASRDIQLREDERGNVVLCGVKEVDVEGLDEVLSLLEM 195
Query: 345 GYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSKTGKA-----------LIHSKLNLVDLA 393
G +R T +T+ N SSRSH +F VTLK + G+A L+ SK + VDLA
Sbjct: 196 GNAARHTGATHLNHLSSRSHTVFTVTLK----QRGRAPSRLPRPAPGQLLVSKFHFVDLA 251
Query: 394 GSECLQKSNATDIRLKECCEINLSLLAVNKVISSTVAGK---TYIPYRDSLLTQLLQDSF 450
GSE + K+ +T KE +IN SLLA+ VIS+ + + IPYRDS +T++L+DS
Sbjct: 252 GSERVLKTGSTGELRKESIQINSSLLALGNVISALGDPQRRGSNIPYRDSKITRILKDSL 311
Query: 451 GGNAKTLMIANIGPAASTYKETLVTLEYANRAK 483
GGNAKT+MIA + P++S + ETL TL YA+RA+
Sbjct: 312 GGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
Score = 92.0 bits (227), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 82/161 (50%), Gaps = 18/161 (11%)
Query: 28 QDENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDA 87
++ ++V +R RP+ +P+ H + CL ++ R+ G+ R F F
Sbjct: 9 EEAPVRVALRVRPL-LPKELLH--------GHQSCLQVEPGLGRVTL---GRDRHFGFHV 56
Query: 88 VYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQM------ERGI 141
V A Q +Y+ V+P++ G+N T+FAYGQTG+GKT+TM + + E+GI
Sbjct: 57 VLAEDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGI 116
Query: 142 MQNAFRQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVS 182
+ A + F + C+V YLE+Y+ + RDLL V
Sbjct: 117 VPRAMAEAFKLIDENDLLDCLVHVSYLEVYKEEFRDLLEVG 157
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppcp
Length = 366
Score = 137 bits (345), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 88/222 (39%), Positives = 128/222 (57%), Gaps = 17/222 (7%)
Query: 290 VECCYLELYQGKIRDLLNV-SRPTLFDTKAKLTLP-CKGLRSVTCQSVEEIENCRKKGYK 347
VE Y+E+Y ++RDLLN ++ L + L P + L + S +I++ G K
Sbjct: 142 VEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNK 201
Query: 348 SRKTASTYFNDYSSRSHAIF--IVTLKVLNSKTGKALIH-SKLNLVDLAGSECLQKSNAT 404
+R A+T N+ SSRSHA+F I T K +++T SK++LVDLAGSE + A
Sbjct: 202 ARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVSKISLVDLAGSERADSTGAK 261
Query: 405 DIRLKECCEINLSLLAVNKVISSTVAGKT------------YIPYRDSLLTQLLQDSFGG 452
RLKE IN SL + KVIS+ + +IPYRDS+LT LL+++ GG
Sbjct: 262 GTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGG 321
Query: 453 NAKTLMIANIGPAASTYKETLVTLEYANRAKKIKNAPNINFY 494
N++T M+A + PA Y ETL TL YA+RAK+I+N ++N +
Sbjct: 322 NSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVNHH 363
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 85/165 (51%), Gaps = 25/165 (15%)
Query: 31 NIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKA-RRFTFDAVY 89
++KV VR RP N E + +I++ + + + P+QP + + F+FD Y
Sbjct: 5 SVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTI--------VNPKQPKETPKSFSFDYSY 56
Query: 90 GMQ--------ATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQM--ER 139
A+Q ++Y + M+ H GYNV IFAYGQTG GK++TM G Q ++
Sbjct: 57 WSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQ 116
Query: 140 GIM----QNAFRQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLN 180
GI+ ++ F +I D + VE Y+E+Y ++RDLLN
Sbjct: 117 GIIPQLCEDLFSRINDTTNDNMSYS--VEVSYMEIYCERVRDLLN 159
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|C Chain C, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|C Chain C, Kif1a Head-Microtubule Complex Structure In Adp-Form
Length = 394
Score = 137 bits (344), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 88/221 (39%), Positives = 127/221 (57%), Gaps = 17/221 (7%)
Query: 290 VECCYLELYQGKIRDLLNV-SRPTLFDTKAKLTLP-CKGLRSVTCQSVEEIENCRKKGYK 347
VE Y+E+Y ++RDLLN ++ L + L P + L + S +I++ G K
Sbjct: 158 VEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNK 217
Query: 348 SRKTASTYFNDYSSRSHAIF--IVTLKVLNSKTGKALIH-SKLNLVDLAGSECLQKSNAT 404
+R A+T N+ SSRSHA+F I T K +++T SK++LVDLAGSE + A
Sbjct: 218 ARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVSKISLVDLAGSERADSTGAK 277
Query: 405 DIRLKECCEINLSLLAVNKVISSTVAGKT------------YIPYRDSLLTQLLQDSFGG 452
RLKE IN SL + KVIS+ + +IPYRDS+LT LL+++ GG
Sbjct: 278 GTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGG 337
Query: 453 NAKTLMIANIGPAASTYKETLVTLEYANRAKKIKNAPNINF 493
N++T M+A + PA Y ETL TL YA+RAK+I+N ++N
Sbjct: 338 NSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVNL 378
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 85/165 (51%), Gaps = 25/165 (15%)
Query: 31 NIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKA-RRFTFDAVY 89
++KV VR RP N E + +I++ + + + P+QP + + F+FD Y
Sbjct: 21 SVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTI--------VNPKQPKETPKSFSFDYSY 72
Query: 90 GMQ--------ATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQM--ER 139
A+Q ++Y + M+ H GYNV IFAYGQTG GK++TM G Q ++
Sbjct: 73 WSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQ 132
Query: 140 GIM----QNAFRQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLN 180
GI+ ++ F +I D + VE Y+E+Y ++RDLLN
Sbjct: 133 GIIPQLCEDLFSRINDTTNDNMSYS--VEVSYMEIYCERVRDLLN 175
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Adp
Length = 367
Score = 136 bits (343), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 88/220 (40%), Positives = 127/220 (57%), Gaps = 17/220 (7%)
Query: 290 VECCYLELYQGKIRDLLNV-SRPTLFDTKAKLTLP-CKGLRSVTCQSVEEIENCRKKGYK 347
VE Y+E+Y ++RDLLN ++ L + L P + L + S +I++ G K
Sbjct: 142 VEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNK 201
Query: 348 SRKTASTYFNDYSSRSHAIF--IVTLKVLNSKTGKALIH-SKLNLVDLAGSECLQKSNAT 404
+R A+T N+ SSRSHA+F I T K +++T SK++LVDLAGSE + A
Sbjct: 202 ARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVSKISLVDLAGSERADSTGAK 261
Query: 405 DIRLKECCEINLSLLAVNKVISSTVAGKT------------YIPYRDSLLTQLLQDSFGG 452
RLKE IN SL + KVIS+ + +IPYRDS+LT LL+++ GG
Sbjct: 262 GTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGG 321
Query: 453 NAKTLMIANIGPAASTYKETLVTLEYANRAKKIKNAPNIN 492
N++T M+A + PA Y ETL TL YA+RAK+I+N ++N
Sbjct: 322 NSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVN 361
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 85/165 (51%), Gaps = 25/165 (15%)
Query: 31 NIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKA-RRFTFDAVY 89
++KV VR RP N E + +I++ + + + P+QP + + F+FD Y
Sbjct: 5 SVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTI--------VNPKQPKETPKSFSFDYSY 56
Query: 90 GMQ--------ATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQM--ER 139
A+Q ++Y + M+ H GYNV IFAYGQTG GK++TM G Q ++
Sbjct: 57 WSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQ 116
Query: 140 GIM----QNAFRQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLN 180
GI+ ++ F +I D + VE Y+E+Y ++RDLLN
Sbjct: 117 GIIPQLCEDLFSRINDTTNDNMSYS--VEVSYMEIYCERVRDLLN 159
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFW|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFX|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-mg-alfx
pdb|1VFZ|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-Mg-Vo4
pdb|2ZFI|A Chain A, Crystal Structure Of The Kif1a Motor Domain Before Mg
Release
pdb|2ZFJ|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-1
pdb|2ZFK|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-2
pdb|2ZFL|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-3
pdb|2ZFM|A Chain A, Crystal Structure Of The Kif1a Motor Domain After Mg
Release
Length = 366
Score = 136 bits (343), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 88/222 (39%), Positives = 127/222 (57%), Gaps = 17/222 (7%)
Query: 290 VECCYLELYQGKIRDLLNV-SRPTLFDTKAKLTLP-CKGLRSVTCQSVEEIENCRKKGYK 347
VE Y+E+Y ++RDLLN ++ L + L P + L + S +I++ G K
Sbjct: 142 VEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNK 201
Query: 348 SRKTASTYFNDYSSRSHAIF--IVTLKVLNSKTGKALIH-SKLNLVDLAGSECLQKSNAT 404
R A+T N+ SSRSHA+F I T K +++T SK++LVDLAGSE + A
Sbjct: 202 PRTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVSKISLVDLAGSERADSTGAK 261
Query: 405 DIRLKECCEINLSLLAVNKVISSTVAGKT------------YIPYRDSLLTQLLQDSFGG 452
RLKE IN SL + KVIS+ + +IPYRDS+LT LL+++ GG
Sbjct: 262 GTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGG 321
Query: 453 NAKTLMIANIGPAASTYKETLVTLEYANRAKKIKNAPNINFY 494
N++T M+A + PA Y ETL TL YA+RAK+I+N ++N +
Sbjct: 322 NSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVNHH 363
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/165 (32%), Positives = 85/165 (51%), Gaps = 25/165 (15%)
Query: 31 NIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKA-RRFTFDAVY 89
++KV VR RP N E + +I++ + + + P+QP + + F+FD Y
Sbjct: 5 SVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTI--------VNPKQPKETPKSFSFDYSY 56
Query: 90 GMQ--------ATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQM--ER 139
A+Q ++Y + M+ H GYNV IFAYGQTG GK++TM G Q ++
Sbjct: 57 WSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQ 116
Query: 140 GIM----QNAFRQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLN 180
GI+ ++ F +I D + VE Y+E+Y ++RDLLN
Sbjct: 117 GIIPQLCEDLFSRINDTTNDNMSYS--VEVSYMEIYCERVRDLLN 159
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding
Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 136 bits (342), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 83/202 (41%), Positives = 119/202 (58%), Gaps = 5/202 (2%)
Query: 295 LELYQGKIRDLL--NVSRPTLFDTK--AKLTLPCKGLRSVTCQSVEEIENCRKKGYKSRK 350
+ELYQ + DLL ++ D K +K + + + V+ + EE++ ++G + R
Sbjct: 134 VELYQDTLVDLLLPKQAKRLKLDIKKDSKGMVSVENVTVVSISTYEELKTIIQRGSEQRH 193
Query: 351 TASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIHSKLNLVDLAGSECLQKSNATDIRLKE 410
T T N+ SSRSH I V ++ N +T +A+ KL+ VDLAGSE ++KS + +LKE
Sbjct: 194 TTGTLMNEQSSRSHLIVSVIIESTNLQT-QAIARGKLSFVDLAGSERVKKSGSAGNQLKE 252
Query: 411 CCEINLSLLAVNKVISSTVAGKTYIPYRDSLLTQLLQDSFGGNAKTLMIANIGPAASTYK 470
IN SL A+ VIS+ +G +IPYR+ LT L+ DS GGNAKTLM NI PA S
Sbjct: 253 AQSINKSLSALGDVISALSSGNQHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLD 312
Query: 471 ETLVTLEYANRAKKIKNAPNIN 492
ET +L YA+R + I N P+ N
Sbjct: 313 ETHNSLTYASRVRSIVNDPSKN 334
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 81/150 (54%), Gaps = 13/150 (8%)
Query: 32 IKVVVRCRPMNVPERKAHVENVIK-IDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYG 90
I+V R RP+ E A N I+ +D +++ + L + KA++ +D V+
Sbjct: 7 IRVYCRLRPLCEKEIIAKERNAIRSVD--------EFTVEHL--WKDDKAKQHMYDRVFD 56
Query: 91 MQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQMERGIMQNAFRQIF 150
ATQ +++E++ + +V + GYNV IFAYGQTG+GKTFT+ G+ G+ A ++F
Sbjct: 57 GNATQDDVFEDT-KYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSELF 115
Query: 151 DFKQKEKRHKCIVECCYL-ELYQGKIRDLL 179
+K+ Y+ ELYQ + DLL
Sbjct: 116 RIMKKDSNKFSFSLKAYMVELYQDTLVDLL 145
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 135 bits (340), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 82/197 (41%), Positives = 117/197 (59%), Gaps = 2/197 (1%)
Query: 290 VECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLP-CKGLRSVTCQSVEEIENCRKKGYKS 348
++ Y E+Y KIRDLL+VS+ L + K +P KG S +E+ + +G +
Sbjct: 130 IKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERFVCSPDEVMDTIDEGKSN 189
Query: 349 RKTASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIHSKLNLVDLAGSECLQKSNATDIRL 408
R A T N++SSRSH+IF++ +K N++T + L KL LVDLAGSE + K+ A L
Sbjct: 190 RHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKL-SGKLYLVDLAGSEKVSKTGAEGAVL 248
Query: 409 KECCEINLSLLAVNKVISSTVAGKTYIPYRDSLLTQLLQDSFGGNAKTLMIANIGPAAST 468
E IN SL A+ VIS+ G TY+PYRDS +T++LQDS GGN +T ++ P++
Sbjct: 249 DEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYN 308
Query: 469 YKETLVTLEYANRAKKI 485
ET TL + RAK I
Sbjct: 309 ESETKSTLLFGQRAKTI 325
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 81/163 (49%), Gaps = 24/163 (14%)
Query: 31 NIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYG 90
NIKV+ R RP+N E + + K + ++ + FD V+
Sbjct: 8 NIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVI--------------ASKPYAFDRVFQ 53
Query: 91 MQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQME-RG------IMQ 143
+Q ++Y + + +V +L GYN TIFAYGQT +GKT TMEG + G I+Q
Sbjct: 54 SSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQ 113
Query: 144 NAFRQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTL 186
+ F I+ + + H ++ Y E+Y KIRDLL+VS+ L
Sbjct: 114 DIFNYIYSMDENLEFH---IKVSYFEIYLDKIRDLLDVSKTNL 153
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 220 VECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLP-CKGLRSVTCQSVEEIENCRKKGYKS 278
++ Y E+Y KIRDLL+VS+ L + K +P KG S +E+ + +G +
Sbjct: 130 IKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERFVCSPDEVMDTIDEGKSN 189
Query: 279 RKTA 282
R A
Sbjct: 190 RHVA 193
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 131 bits (329), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 85/215 (39%), Positives = 118/215 (54%), Gaps = 5/215 (2%)
Query: 276 YKSRKTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSV 335
YK K+ C YLE+Y +IRDLL S P + + GL +S
Sbjct: 141 YKCMDEIKEEKICSTAVSYLEVYNEQIRDLLVNSGPLAVREDTQKGVVVHGLTLHQPKSS 200
Query: 336 EEIENCRKKGYKSRKTASTYFNDYSSRSHAIFIVTLKVLN--SKTGKALIHSKLNLVDLA 393
EEI + G K+R T N SSRSHA+F + L+ + + + + +K++L+DLA
Sbjct: 201 EEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYLRQQDKTASINQNVRIAKMSLIDLA 260
Query: 394 GSECLQKSNATDIRLKECCEINLSLLAVNKVISSTVAGK---TYIPYRDSLLTQLLQDSF 450
GSE S A R E IN SLLA+ VI++ K +IPYR+S LT+LL+DS
Sbjct: 261 GSERASTSGAKGTRFVEGTNINRSLLALGNVINALADSKRKNQHIPYRNSKLTRLLKDSL 320
Query: 451 GGNAKTLMIANIGPAASTYKETLVTLEYANRAKKI 485
GGN +T+MIA + P++ Y +T TL+YANRAK I
Sbjct: 321 GGNCQTIMIAAVSPSSVFYDDTYNTLKYANRAKDI 355
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/171 (35%), Positives = 93/171 (54%), Gaps = 16/171 (9%)
Query: 26 HHQDENIKVVVRCRPMNVPERKAHVENVIKI--------DTTKKCLSIQY---STDRLKP 74
HH +KVVVR RP N E+ A V+ + D ++ +S + +T++
Sbjct: 10 HH----MKVVVRVRPENTKEKAAGFHKVVHVVDKHILVFDPKQEEVSFFHGKKTTNQNVI 65
Query: 75 RQPGKARRFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEG 134
++ K +F FDAV+ +TQ+E++E++ +P++ L+GYN T+ AYG TG GKT TM G
Sbjct: 66 KKQNKDLKFVFDAVFDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLG 125
Query: 135 SQMERGIMQNAFRQIFDFKQKEKRHK-CIVECCYLELYQGKIRDLLNVSRP 184
S E G+M ++ + K K C YLE+Y +IRDLL S P
Sbjct: 126 SADEPGVMYLTMLHLYKCMDEIKEEKICSTAVSYLEVYNEQIRDLLVNSGP 176
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 28/62 (45%)
Query: 218 CIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSVEEIENCRKKGYK 277
C YLE+Y +IRDLL S P + + GL +S EEI + G K
Sbjct: 153 CSTAVSYLEVYNEQIRDLLVNSGPLAVREDTQKGVVVHGLTLHQPKSSEEILHLLDNGNK 212
Query: 278 SR 279
+R
Sbjct: 213 NR 214
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 129 bits (325), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 80/215 (37%), Positives = 121/215 (56%), Gaps = 5/215 (2%)
Query: 280 KTAKKRHKCIVECCYLELYQGKIRDLL--NVSRPTLFDTK--AKLTLPCKGLRSVTCQSV 335
K KR ++ +ELYQ + DLL +R + K +K + + + ++ ++
Sbjct: 127 KRDSKRFSFSLKAYMVELYQDTLVDLLLPKSARRLKLEIKKDSKGMVFVENVTTIPISTL 186
Query: 336 EEIENCRKKGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIHSKLNLVDLAGS 395
EE+ ++G + R + T N+ SSRSH I V ++ ++ +T A KL+ VDLAGS
Sbjct: 187 EELRMILERGSERRHVSGTNMNEESSRSHLILSVVIESIDLQTQSA-ARGKLSFVDLAGS 245
Query: 396 ECLQKSNATDIRLKECCEINLSLLAVNKVISSTVAGKTYIPYRDSLLTQLLQDSFGGNAK 455
E ++KS + +LKE IN SL A+ VI + +G +IPYR+ LT L+ DS GGNAK
Sbjct: 246 ERVKKSGSAGNQLKEAQSINKSLSALGDVIGALSSGNQHIPYRNHKLTMLMSDSLGGNAK 305
Query: 456 TLMIANIGPAASTYKETLVTLEYANRAKKIKNAPN 490
TLM N+ PA S ET +L YA+R + I N P+
Sbjct: 306 TLMFVNVSPAESNLDETYNSLLYASRVRTIVNDPS 340
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 86/149 (57%), Gaps = 11/149 (7%)
Query: 32 IKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYGM 91
I+V R RP+N E + ++ TT ++++ P + K ++ +D V+ M
Sbjct: 15 IRVYCRIRPLNEKESSEREKQML---TTVDEFTVEH------PWKDDKRKQHIYDRVFDM 65
Query: 92 QATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQMERGIMQNAFRQIFD 151
+A+Q +I+E++ + +V + GYNV IFAYGQTG+GKTFT+ G + G+ A +++F+
Sbjct: 66 RASQDDIFEDT-KYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGHESNPGLTPRATKELFN 124
Query: 152 -FKQKEKRHKCIVECCYLELYQGKIRDLL 179
K+ KR ++ +ELYQ + DLL
Sbjct: 125 ILKRDSKRFSFSLKAYMVELYQDTLVDLL 153
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex
With Adp
Length = 330
Score = 127 bits (320), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 77/197 (39%), Positives = 114/197 (57%), Gaps = 9/197 (4%)
Query: 296 ELYQGKIRDLLNVSRPTLF------DTKAKLTLPCKGLRSVTCQSVEEIENCRKKGYKSR 349
E+Y +RDLL D +L +P GL QSV++I + G+ +R
Sbjct: 136 EIYNEVLRDLLGKEPQEKLEIRLCPDGSGQLYVP--GLTEFQVQSVDDINKVFEFGHTNR 193
Query: 350 KTASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIHSKLNLVDLAGSECLQKSNATDIRLK 409
T T N++SSRSHA+ IVT++ ++ TG KLNLVDLAGSE + KS A RL+
Sbjct: 194 TTEFTNLNEHSSRSHALLIVTVRGVDCSTGLRTT-GKLNLVDLAGSERVGKSGAEGSRLR 252
Query: 410 ECCEINLSLLAVNKVISSTVAGKTYIPYRDSLLTQLLQDSFGGNAKTLMIANIGPAASTY 469
E IN SL A+ VI++ + + ++P+R+S LT LLQDS G++KTLM+ + P
Sbjct: 253 EAQHINKSLSALGDVIAALRSRQGHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNT 312
Query: 470 KETLVTLEYANRAKKIK 486
ETL +L++A R + ++
Sbjct: 313 SETLYSLKFAERVRSVE 329
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 77/152 (50%), Gaps = 11/152 (7%)
Query: 31 NIKVVVRCRPMNVPERKA-HVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVY 89
NI+V+ R RP+ + + N + D + + GK F D V+
Sbjct: 5 NIRVIARVRPVTKEDGEGPEATNAVTFDADDDSI--------IHLLHKGKPVSFELDKVF 56
Query: 90 GMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQMERGIMQNAFRQI 149
QA+Q ++++ V+ +V + G+NV IFAYGQTG GKT+TMEG+ GI Q A + +
Sbjct: 57 SPQASQQDVFQE-VQALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAENPGINQRALQLL 115
Query: 150 F-DFKQKEKRHKCIVECCYLELYQGKIRDLLN 180
F + ++K + + E+Y +RDLL
Sbjct: 116 FSEVQEKASDWEYTITVSAAEIYNEVLRDLLG 147
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 22
Length = 388
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 80/228 (35%), Positives = 119/228 (52%), Gaps = 10/228 (4%)
Query: 268 IENCRKKGYKSRKTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTLF---DTKAKLTLPC 324
++ R++G + R A V YLE+YQ K+ DLL+ + L D + + +P
Sbjct: 134 LQLTREEGAEGRPWA-----LSVTMSYLEIYQEKVLDLLDPASGDLVIREDCRGNILIP- 187
Query: 325 KGLRSVTCQSVEEIENCRKKGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIH 384
GL S + E ++R +T N SSRSHA+ +V +
Sbjct: 188 -GLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERLAPFRQRE 246
Query: 385 SKLNLVDLAGSECLQKSNATDIRLKECCEINLSLLAVNKVISSTVAGKTYIPYRDSLLTQ 444
KL L+DLAGSE +++ +RLKE IN SL + KV+ + G +PYRDS LT+
Sbjct: 247 GKLYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGLPRVPYRDSKLTR 306
Query: 445 LLQDSFGGNAKTLMIANIGPAASTYKETLVTLEYANRAKKIKNAPNIN 492
LLQDS GG+A +++IANI P Y +T+ L +A R+K++ N P N
Sbjct: 307 LLQDSLGGSAHSILIANIAPERRFYLDTVSALNFAARSKEVINRPFTN 354
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 62/103 (60%), Gaps = 4/103 (3%)
Query: 82 RFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQMERGI 141
++ FDA YG ++TQ +IY SV+P++ H+L G N ++ AYG TG GKT TM GS + G+
Sbjct: 66 KYQFDAFYGERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTMLGSPEQPGV 125
Query: 142 MQNAFRQIFDFKQKE----KRHKCIVECCYLELYQGKIRDLLN 180
+ A + ++E + V YLE+YQ K+ DLL+
Sbjct: 126 IPRALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLLD 168
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 127 bits (318), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 89/237 (37%), Positives = 123/237 (51%), Gaps = 39/237 (16%)
Query: 290 VECCYLELYQGKIRDLLNVSRPTLFDTKAKL-TLPCKG-----LRSVTCQSVEEIENCRK 343
V+ Y E+Y +RDLL P K+ P +G L V + +EEI +
Sbjct: 189 VKVSYFEVYNEHVRDLLAPVVPNKPPYYLKVRESPTEGPYVKDLTEVPVRGLEEIIRWMR 248
Query: 344 KGYKSRKTASTYFNDYSSRSHAIFIVTLKVL------NSKTGKALIHSKLNLVDLAGSEC 397
G SR AST ND SSRSHA+F + LK + + T ++ S++ LVDLAGSE
Sbjct: 249 IGDGSRTVASTKMNDTSSRSHAVFTIMLKQIHHDLETDDTTERS---SRIRLVDLAGSER 305
Query: 398 LQKSNATDIRLKECCEINLSLLAVNKVISSTVAGKT----------------------YI 435
+ + AT RL+E IN SL + +VI++ K+ +
Sbjct: 306 AKSTEATGQRLREGSNINKSLTTLGRVIAALADPKSSASRPSSPVKSGRGRTPGPANSVV 365
Query: 436 PYRDSLLTQLLQDSFGGNAKTLMIANIGPAASTYKETLVTLEYANRAKKIKNAPNIN 492
PYRDS+LT LL+DS GGN+KT MIA I P + Y ETL TL YA++AK+I+ +N
Sbjct: 366 PYRDSVLTWLLKDSLGGNSKTAMIACISP--TDYDETLSTLRYADQAKRIRTRAVVN 420
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 78/154 (50%), Gaps = 22/154 (14%)
Query: 45 ERKAHVENVIKID--TTKKCLSIQYSTDRLKPRQPGKARR------FTFDAVYGMQ---- 92
ER A E ++++D T + L + TD R ++RR FTFD +
Sbjct: 55 ERNA--ECIVEMDPATERTSLLVPQETDFADARG-ARSRRVLEEKSFTFDKSFWSHNTED 111
Query: 93 ---ATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQMERGIM----QNA 145
ATQ +Y++ ++H GY+ IFAYGQTG+GK++TM G+ + G++ ++
Sbjct: 112 EHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGTPDQPGLIPRTCEDL 171
Query: 146 FRQIFDFKQKEKRHKCIVECCYLELYQGKIRDLL 179
F++I + + V+ Y E+Y +RDLL
Sbjct: 172 FQRIASAQDETPNISYNVKVSYFEVYNEHVRDLL 205
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 84/207 (40%), Positives = 113/207 (54%), Gaps = 15/207 (7%)
Query: 290 VECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCK-----------GLRSVTCQSVEEI 338
V ++E+Y I DLL DT L + + SV +S E +
Sbjct: 189 VNAEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITNVTSVKLESEEMV 248
Query: 339 ENCRKKGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIHSKLNLVDLAGSECL 398
E KK K R TAST N++SSRSH+IFI+ L N+KTG A + LNLVDLAGSE +
Sbjct: 249 EIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTG-AHSYGTLNLVDLAGSERI 307
Query: 399 QKSNATDIRLKECCEINLSLLAVNKVISSTV---AGKTYIPYRDSLLTQLLQDSFGGNAK 455
S RL+E IN SL A+ VI + + K +IP+R+S LT LLQ S G++K
Sbjct: 308 NVSQVVGDRLRETQNINKSLSALGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSK 367
Query: 456 TLMIANIGPAASTYKETLVTLEYANRA 482
TLM NI P++S ETL +L +A++
Sbjct: 368 TLMFVNISPSSSHINETLNSLRFASKV 394
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 82/169 (48%), Gaps = 13/169 (7%)
Query: 15 CRRTKSLHPNEHHQDENIKVVVRCRPM--NVPERKAHVENVIKIDTTKKCLSIQYSTDRL 72
RRT LH NI+V +R RP N+ + NV + D S++ +
Sbjct: 46 VRRT--LHNELQELRGNIRVYLRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVT---- 99
Query: 73 KPRQPGKARRFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTM 132
K + + F FD ++ Q T ++++ V +V L GYNV IFAYGQTG+GKTFTM
Sbjct: 100 KIQNTAQVHEFKFDKIFDQQDTNVDVFK-EVGQLVQSSLDGYNVAIFAYGQTGSGKTFTM 158
Query: 133 EGSQMERGIMQNAFRQIFDF--KQKEKRHKCIVECCYLELYQGKIRDLL 179
GI+ + IF++ K K K V ++E+Y I DLL
Sbjct: 159 LNPG--DGIIPSTISHIFNWINKLKTKGWDYKVNAEFIEIYNENIVDLL 205
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 86/241 (35%), Positives = 128/241 (53%), Gaps = 22/241 (9%)
Query: 250 LTLPCKGLRSVTCQSV-EEIENCRKKGYKSRKTAKKRHKCIVECCYLELYQGKIRDLLN- 307
++ P G+ ++ + + +IE ++KG+ V ++E+Y I DLLN
Sbjct: 480 MSHPTNGMIPLSLKKIFNDIEELKEKGWS----------YTVRGKFIEIYNEAIVDLLNP 529
Query: 308 -VSRPTLF-----DTKAKLTLPCKGLRSVTCQSVEEIENCRKKGYKSRKTASTYFNDYSS 361
+ T + D K T+ + ++ +S E+ + K R TA+T ND+SS
Sbjct: 530 KIDPNTKYEIKHDDIAGKTTV--TNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSS 587
Query: 362 RSHAIFIVTLKVLNSKTGKALIHSKLNLVDLAGSECLQKSNATDIRLKECCEINLSLLAV 421
RSH+IFI+ L+ NS T K + LNL+DLAGSE L S A RLKE IN SL +
Sbjct: 588 RSHSIFIIDLQGYNSLT-KESSYGTLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCL 646
Query: 422 NKVISS-TVAGKTYIPYRDSLLTQLLQDSFGGNAKTLMIANIGPAASTYKETLVTLEYAN 480
VI S + +++PYR+S LT LL+ S GGN+KTLM NI P ET+ +L +A
Sbjct: 647 GDVIHSLNLKDGSHVPYRNSKLTYLLKHSLGGNSKTLMFVNISPLTKDLNETINSLRFAT 706
Query: 481 R 481
+
Sbjct: 707 K 707
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 59/101 (58%), Gaps = 5/101 (4%)
Query: 82 RFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQMERGI 141
RF FD ++ + + ++E + ++ L G NV +FAYGQTG+GKTFTM S G+
Sbjct: 431 RFLFDKIFEREQSNDLVFE-ELSQLIQCSLDGTNVCVFAYGQTGSGKTFTM--SHPTNGM 487
Query: 142 MQNAFRQIF-DFKQ-KEKRHKCIVECCYLELYQGKIRDLLN 180
+ + ++IF D ++ KEK V ++E+Y I DLLN
Sbjct: 488 IPLSLKKIFNDIEELKEKGWSYTVRGKFIEIYNEAIVDLLN 528
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling
Pathway For Activation Of The Motor Atpase
Length = 358
Score = 118 bits (296), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 83/211 (39%), Positives = 113/211 (53%), Gaps = 15/211 (7%)
Query: 290 VECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCK-----------GLRSVTCQSVEEI 338
V C ++E+Y I DLL DT L + + S +S E +
Sbjct: 144 VNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITNVTSCKLESEEMV 203
Query: 339 ENCRKKGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIHSKLNLVDLAGSECL 398
E KK K R TAST N++SSRSH+IFI+ L N+KTG A + LNLVDLAGSE +
Sbjct: 204 EIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTG-AHSYGTLNLVDLAGSERI 262
Query: 399 QKSNATDIRLKECCEINLSLLAVNKVISSTV---AGKTYIPYRDSLLTQLLQDSFGGNAK 455
S RL+E IN SL + VI + + K +IP+R+S LT LLQ S G++K
Sbjct: 263 NVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSK 322
Query: 456 TLMIANIGPAASTYKETLVTLEYANRAKKIK 486
TLM NI P++S ETL +L +A++ +
Sbjct: 323 TLMFVNISPSSSHINETLNSLRFASKVNSTR 353
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 82/168 (48%), Gaps = 13/168 (7%)
Query: 16 RRTKSLHPNEHHQDENIKVVVRCRPM--NVPERKAHVENVIKIDTTKKCLSIQYSTDRLK 73
RRT LH NI+V R RP N+ + NV + D S++ + K
Sbjct: 2 RRT--LHNELQELRGNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVT----K 55
Query: 74 PRQPGKARRFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTME 133
+ + F FD ++ Q T ++++ V +V L GYNV IFAYGQTG+GKTFTM
Sbjct: 56 IQNTAQVHEFKFDKIFDQQDTNVDVFK-EVGQLVQSSLDGYNVCIFAYGQTGSGKTFTML 114
Query: 134 GSQMERGIMQNAFRQIFDF--KQKEKRHKCIVECCYLELYQGKIRDLL 179
GI+ + IF++ K K K V C ++E+Y I DLL
Sbjct: 115 NPG--DGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLL 160
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A
Saccharomyces Cerevisiae Kinesin-Related Protein
Length = 346
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 83/211 (39%), Positives = 113/211 (53%), Gaps = 15/211 (7%)
Query: 290 VECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCK-----------GLRSVTCQSVEEI 338
V C ++E+Y I DLL DT L + + S +S E +
Sbjct: 132 VNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITNVTSCKLESEEMV 191
Query: 339 ENCRKKGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIHSKLNLVDLAGSECL 398
E KK K R TAST N++SSRSH+IFI+ L N+KTG A + LNLVDLAGSE +
Sbjct: 192 EIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTG-AHSYGTLNLVDLAGSERI 250
Query: 399 QKSNATDIRLKECCEINLSLLAVNKVISSTV---AGKTYIPYRDSLLTQLLQDSFGGNAK 455
S RL+E IN SL + VI + + K +IP+R+S LT LLQ S G++K
Sbjct: 251 NVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSK 310
Query: 456 TLMIANIGPAASTYKETLVTLEYANRAKKIK 486
TLM NI P++S ETL +L +A++ +
Sbjct: 311 TLMFVNISPSSSHINETLNSLRFASKVNSTR 341
Score = 81.6 bits (200), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 77/153 (50%), Gaps = 11/153 (7%)
Query: 31 NIKVVVRCRPM--NVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAV 88
NI+V R RP N+ + NV + D S++ + K + + F FD +
Sbjct: 3 NIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVT----KIQNTAQVHEFKFDKI 58
Query: 89 YGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQMERGIMQNAFRQ 148
+ Q T ++++ V +V L GYNV IFAYGQTG+GKTFTM GI+ +
Sbjct: 59 FDQQDTNVDVFK-EVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPG--DGIIPSTISH 115
Query: 149 IFDF--KQKEKRHKCIVECCYLELYQGKIRDLL 179
IF++ K K K V C ++E+Y I DLL
Sbjct: 116 IFNWINKLKTKGWDYKVNCEFIEIYNENIVDLL 148
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
pdb|1T5C|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
Length = 349
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/213 (38%), Positives = 110/213 (51%), Gaps = 11/213 (5%)
Query: 289 IVECCYLELYQGKIRDLL---NVSRPTLFDTKAKLTLPCKGLRSVTCQSVEEIENCRKKG 345
++ Y+E+Y I DLL +P + + L + E KG
Sbjct: 125 LLRVSYMEIYNETITDLLCGTQKMKPLIIREDVNRNVYVADLTEEVVYTSEMALKWITKG 184
Query: 346 YKSRKTASTYFNDYSSRSHAIFIVTL----KVLNSKTGKALIHSKLNLVDLAGSECLQKS 401
KSR T N SSRSH IF + L K S ++ S LNLVDLAGSE ++
Sbjct: 185 EKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVKVSHLNLVDLAGSERAAQT 244
Query: 402 NATDIRLKECCEINLSLLAVNKVISSTVAGKT--YIPYRDSLLTQLLQDSFGGNAKTLMI 459
A +RLKE C IN SL + +VI G+ +I YRDS LT++LQ+S GGNAKT +I
Sbjct: 245 GAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYRDSKLTRILQNSLGGNAKTRII 304
Query: 460 ANIGPAASTYKETLVTLEYANRAKKIKNAPNIN 492
I P ++ ETL L++A+ AK +KN P +N
Sbjct: 305 CTITPV--SFDETLTALQFASTAKYMKNTPYVN 335
Score = 89.0 bits (219), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 74/148 (50%), Gaps = 11/148 (7%)
Query: 32 IKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYGM 91
+ V VR RP+N E ++ + + + TD Q ++ F FD V+
Sbjct: 6 VAVCVRVRPLNSRE-----------ESLGETAQVYWKTDNNVIYQVDGSKSFNFDRVFHG 54
Query: 92 QATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQMERGIMQNAFRQIFD 151
T +YE P+++ + GYN TIFAYGQT +GKT+TM GS+ G++ A IF
Sbjct: 55 NETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMMGSEDHLGVIPRAIHDIFQ 114
Query: 152 FKQKEKRHKCIVECCYLELYQGKIRDLL 179
+K + ++ Y+E+Y I DLL
Sbjct: 115 KIKKFPDREFLLRVSYMEIYNETITDLL 142
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
pdb|1F9W|B Chain B, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 115 bits (288), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 82/211 (38%), Positives = 112/211 (53%), Gaps = 15/211 (7%)
Query: 290 VECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCK-----------GLRSVTCQSVEEI 338
V C ++E+Y I DLL DT L + + S +S E +
Sbjct: 133 VNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITNVTSCKLESEEMV 192
Query: 339 ENCRKKGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIHSKLNLVDLAGSECL 398
E KK K R TAST N++SSRSH+IFI+ L N+KTG A + LNLVDLAGS +
Sbjct: 193 EIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTG-AHSYGTLNLVDLAGSARI 251
Query: 399 QKSNATDIRLKECCEINLSLLAVNKVISSTV---AGKTYIPYRDSLLTQLLQDSFGGNAK 455
S RL+E IN SL + VI + + K +IP+R+S LT LLQ S G++K
Sbjct: 252 NVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSK 311
Query: 456 TLMIANIGPAASTYKETLVTLEYANRAKKIK 486
TLM NI P++S ETL +L +A++ +
Sbjct: 312 TLMFVNISPSSSHINETLNSLRFASKVNSTR 342
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 77/153 (50%), Gaps = 11/153 (7%)
Query: 31 NIKVVVRCRPM--NVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAV 88
NI+V R RP N+ + NV + D S++ + K + + F FD +
Sbjct: 4 NIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVT----KIQNTAQVHEFKFDKI 59
Query: 89 YGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQMERGIMQNAFRQ 148
+ Q T ++++ V +V L GYNV IFAYGQTG+GKTFTM GI+ +
Sbjct: 60 FDQQDTNVDVFK-EVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPG--DGIIPSTISH 116
Query: 149 IFDF--KQKEKRHKCIVECCYLELYQGKIRDLL 179
IF++ K K K V C ++E+Y I DLL
Sbjct: 117 IFNWINKLKTKGWDYKVNCEFIEIYNENIVDLL 149
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 115 bits (287), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 82/211 (38%), Positives = 112/211 (53%), Gaps = 15/211 (7%)
Query: 290 VECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCK-----------GLRSVTCQSVEEI 338
V C ++E+Y I DLL DT L + + S +S E +
Sbjct: 133 VNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITNVTSCKLESEEMV 192
Query: 339 ENCRKKGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIHSKLNLVDLAGSECL 398
E KK K R TAST N++SSRSH+IFI+ L N+KTG A + LNLVDLAGSE +
Sbjct: 193 EIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTG-AHSYGTLNLVDLAGSERI 251
Query: 399 QKSNATDIRLKECCEINLSLLAVNKVISSTV---AGKTYIPYRDSLLTQLLQDSFGGNAK 455
S RL+E I SL + VI + + K +IP+R+S LT LLQ S G++K
Sbjct: 252 NVSQVVGDRLRETQNIKKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSK 311
Query: 456 TLMIANIGPAASTYKETLVTLEYANRAKKIK 486
TLM NI P++S ETL +L +A++ +
Sbjct: 312 TLMFVNISPSSSHINETLNSLRFASKVNSTR 342
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 77/153 (50%), Gaps = 11/153 (7%)
Query: 31 NIKVVVRCRPM--NVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAV 88
NI+V R RP N+ + NV + D S++ + K + + F FD +
Sbjct: 4 NIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVT----KIQNTAQVHEFKFDKI 59
Query: 89 YGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQMERGIMQNAFRQ 148
+ Q T ++++ V +V L GYNV IFAYGQTG+GKTFTM GI+ +
Sbjct: 60 FDQQDTNVDVFK-EVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPG--DGIIPSTISH 116
Query: 149 IFDF--KQKEKRHKCIVECCYLELYQGKIRDLL 179
IF++ K K K V C ++E+Y I DLL
Sbjct: 117 IFNWINKLKTKGWDYKVNCEFIEIYNENIVDLL 149
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 115 bits (287), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 82/211 (38%), Positives = 112/211 (53%), Gaps = 15/211 (7%)
Query: 290 VECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCK-----------GLRSVTCQSVEEI 338
V C ++E+Y I DLL DT L + + S +S E +
Sbjct: 133 VNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITNVTSCKLESEEMV 192
Query: 339 ENCRKKGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIHSKLNLVDLAGSECL 398
E KK K R TAST N++SS SH+IFI+ L N+KTG A + LNLVDLAGSE +
Sbjct: 193 EIILKKANKLRSTASTASNEHSSASHSIFIIHLSGSNAKTG-AHSYGTLNLVDLAGSERI 251
Query: 399 QKSNATDIRLKECCEINLSLLAVNKVISSTV---AGKTYIPYRDSLLTQLLQDSFGGNAK 455
S RL+E IN SL + VI + + K +IP+R+S LT LLQ S G++K
Sbjct: 252 NVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSK 311
Query: 456 TLMIANIGPAASTYKETLVTLEYANRAKKIK 486
TLM NI P++S ETL +L +A++ +
Sbjct: 312 TLMFVNISPSSSHINETLNSLRFASKVNSTR 342
Score = 81.6 bits (200), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 77/153 (50%), Gaps = 11/153 (7%)
Query: 31 NIKVVVRCRPM--NVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAV 88
NI+V R RP N+ + NV + D S++ + K + + F FD +
Sbjct: 4 NIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVT----KIQNTAQVHEFKFDKI 59
Query: 89 YGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQMERGIMQNAFRQ 148
+ Q T ++++ V +V L GYNV IFAYGQTG+GKTFTM GI+ +
Sbjct: 60 FDQQDTNVDVFK-EVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPG--DGIIPSTISH 116
Query: 149 IFDF--KQKEKRHKCIVECCYLELYQGKIRDLL 179
IF++ K K K V C ++E+Y I DLL
Sbjct: 117 IFNWINKLKTKGWDYKVNCEFIEIYNENIVDLL 149
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From
Ashbya Gossypii
Length = 349
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 82/217 (37%), Positives = 115/217 (52%), Gaps = 21/217 (9%)
Query: 290 VECCYLELYQGKIRDLL-------NVSRPTLFDTK--------AKLTLPCKGLRSVTCQS 334
+EC Y+E+Y I DLL N+ + D++ K + + S
Sbjct: 134 MECEYIEIYNETILDLLRDFKSHDNIDE--ILDSQKHDIRHDHEKQGTYITNVTRMKMTS 191
Query: 335 VEEIENCRKKGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIHSKLNLVDLAG 394
+++ KK K R TA+T N+ SSRSH++F+V + N TG+ KLNLVDLAG
Sbjct: 192 TSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHINGRNLHTGET-SQGKLNLVDLAG 250
Query: 395 SECLQKSNATDIRLKECCEINLSLLAVNKVI---SSTVAGKTYIPYRDSLLTQLLQDSFG 451
SE + S T RL+E IN SL + VI ++ AGK YIP+R+S LT LLQ S
Sbjct: 251 SERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDAGKRYIPFRNSKLTYLLQYSLV 310
Query: 452 GNAKTLMIANIGPAASTYKETLVTLEYANRAKKIKNA 488
G++KTLM NI P + ETL +L +A++ K A
Sbjct: 311 GDSKTLMFVNIPPDPNHISETLNSLRFASKVNSTKIA 347
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 97/189 (51%), Gaps = 26/189 (13%)
Query: 31 NIKVVVRCRP--MNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGK--ARRFTFD 86
NI+V R RP +N P+ +H+ + K + K S+ + R G+ + F FD
Sbjct: 6 NIRVYCRVRPPLLNEPQDMSHIL-IEKFNEAKGAQSLTIN------RNEGRILSYNFQFD 58
Query: 87 AVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTM--EGSQMERGIMQN 144
++ T EI+E +R +V L GYNV IFAYGQTG+GKT+TM G M + +
Sbjct: 59 MIFEPSHTNKEIFE-EIRQLVQSSLDGYNVCIFAYGQTGSGKTYTMLNAGDGMIPMTLSH 117
Query: 145 AFRQIFDFKQKEKRHKCIVECCYLELYQGKIRDLL-------NVSRPTLFDTKAKLNIYH 197
F+ + K++ ++ +EC Y+E+Y I DLL N+ + D++ K +I H
Sbjct: 118 IFKWTANLKERGWNYE--MECEYIEIYNETILDLLRDFKSHDNIDE--ILDSQ-KHDIRH 172
Query: 198 GRQSNGTQI 206
+ GT I
Sbjct: 173 DHEKQGTYI 181
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
pdb|4GKR|B Chain B, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
Length = 371
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 83/223 (37%), Positives = 116/223 (52%), Gaps = 17/223 (7%)
Query: 280 KTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTL------FDTKAKL-------TLPCKG 326
K A + V C ++E+Y I DLL P+ D+K ++ T
Sbjct: 145 KLAARGWSYKVSCEFIEIYNENIVDLLRSGAPSQENNDRNADSKHEIRHDQELKTTYITN 204
Query: 327 LRSVTCQSVEEIENCRKKGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIHSK 386
+ + S + ++ K+ K R TAST N++SSRSH+IFI+ L+ N TG+
Sbjct: 205 ITTCVLDSRDTVDKVLKRANKLRSTASTAANEHSSRSHSIFIIHLEGKNEGTGEKS-QGI 263
Query: 387 LNLVDLAGSECLQKSNATDIRLKECCEINLSLLAVNKVI---SSTVAGKTYIPYRDSLLT 443
LNLVDLAGSE L S RL+E IN SL + VI +S K +IP+R+S LT
Sbjct: 264 LNLVDLAGSERLNSSMVVGERLRETQSINKSLSCLGDVIHALNSPDGQKRHIPFRNSKLT 323
Query: 444 QLLQDSFGGNAKTLMIANIGPAASTYKETLVTLEYANRAKKIK 486
LLQ S G++KTLM NI PAA ET+ +L +A++ K
Sbjct: 324 YLLQYSLIGSSKTLMFVNISPAALHLNETINSLRFASKVNNTK 366
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 87/186 (46%), Gaps = 19/186 (10%)
Query: 6 MKKLKRHNECRRTKSLHPNEHHQDENIKVVVRCRPMNVPERKAHVENV----IKIDTTKK 61
+KK+ E R ++LH NI+V R RP +P ++E++ D +
Sbjct: 5 IKKILVKEESLR-RALHNELQELRGNIRVYCRIRPP-LPHEDDNIEHIKVQPFDDDNGDQ 62
Query: 62 CLSIQYSTDRLKPRQPGKARRFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAY 121
++I ++ P F FD ++ Q T EI++ V ++ L GYNV IFAY
Sbjct: 63 GMTINRGNSQVIP--------FKFDKIFDQQETNDEIFK-EVGQLIQSSLDGYNVCIFAY 113
Query: 122 GQTGTGKTFTMEGSQMERGIMQNAFRQIFDFKQK--EKRHKCIVECCYLELYQGKIRDLL 179
GQTG+GKT+TM GI+ IF + K + V C ++E+Y I DLL
Sbjct: 114 GQTGSGKTYTMLNPG--DGIVPATINHIFSWIDKLAARGWSYKVSCEFIEIYNENIVDLL 171
Query: 180 NVSRPT 185
P+
Sbjct: 172 RSGAPS 177
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In
Complex With Adp
Length = 420
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 74/198 (37%), Positives = 111/198 (56%), Gaps = 8/198 (4%)
Query: 290 VECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSVEEIENCRKKGYKSR 349
V + E+Y GK+ DLLN K + GL+ + VE++ G R
Sbjct: 229 VYATFFEIYSGKVFDLLNRKTKLRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNSCR 288
Query: 350 KTASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIHSKLNLVDLAGSECLQKSNATDIRLK 409
+ T N +SSRSHA+F + L+ + GK +H K +L+DLAG+E +++ D + +
Sbjct: 289 TSGQTSANAHSSRSHAVFQIILR----RKGK--LHGKFSLIDLAGNERGADTSSADRQTR 342
Query: 410 -ECCEINLSLLAVNKVISSTVAGKTYIPYRDSLLTQLLQDSF-GGNAKTLMIANIGPAAS 467
E EIN SLLA+ + I + K + P+R S LTQ+L+DSF G N++T MIA I P +
Sbjct: 343 LEGAEINKSLLALKECIRALGRNKPHTPFRASKLTQVLRDSFIGENSRTCMIATISPGMA 402
Query: 468 TYKETLVTLEYANRAKKI 485
+ + TL TL YANR K++
Sbjct: 403 SCENTLNTLRYANRVKEL 420
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 79/166 (47%), Gaps = 12/166 (7%)
Query: 23 PNEHHQDENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARR 82
P + H+ I V VR RP+N E + +VI I +K + + ++ + + +
Sbjct: 85 PIDEHR---ICVCVRKRPLNKKETQMKDLDVITI-PSKDVVMVHEPKQKVDLTRYLENQT 140
Query: 83 FTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGS------Q 136
F FD + A +Y + RP+V + T FAYGQTG+GKT TM G
Sbjct: 141 FRFDYAFDDSAPNEMVYRFTARPLVETIFERGMATCFAYGQTGSGKTHTMGGDFSGKNQD 200
Query: 137 MERGIMQNAFRQIFDFKQKE--KRHKCIVECCYLELYQGKIRDLLN 180
+GI A R +F +K K+ + V + E+Y GK+ DLLN
Sbjct: 201 CSKGIYALAARDVFLMLKKPNYKKLELQVYATFFEIYSGKVFDLLN 246
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Kin10NOD IN Complex With Divalent Manganese And Adp
Length = 344
Score = 112 bits (280), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 72/197 (36%), Positives = 107/197 (54%), Gaps = 12/197 (6%)
Query: 290 VECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSVEEIENCRKKGYKSR 349
V ++E+Y K DLL S P + A+ C+ + S ++ + + G ++R
Sbjct: 152 VYASFIEIYNEKPFDLLG-STPHMPMVAAR----CQRCTCLPLHSQADLHHILELGTRNR 206
Query: 350 KTASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIHSKLNLVDLAGSECLQKSNATDIRLK 409
+ T N SSRSHAI + +K SKT HS++N+VDLAGSE ++++ + +
Sbjct: 207 RVRPTNMNSNSSRSHAIVTIHVK---SKTH----HSRMNIVDLAGSEGVRRTGHEGVARQ 259
Query: 410 ECCEINLSLLAVNKVISSTVAGKTYIPYRDSLLTQLLQDSFGGNAKTLMIANIGPAASTY 469
E INL LL++NKV+ S AG T IPYRDS+LT +LQ S + +A I P
Sbjct: 260 EGVNINLGLLSINKVVMSMAAGHTVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDL 319
Query: 470 KETLVTLEYANRAKKIK 486
ETL TL + AKK++
Sbjct: 320 SETLSTLRFGTSAKKLR 336
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 62/127 (48%), Gaps = 14/127 (11%)
Query: 68 STDRLKPRQPGKA-----RRFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYG 122
S + P GK+ F FD + +Q E+Y+ + P+V+ +L G+ T AYG
Sbjct: 43 SVVQFPPWSDGKSLIVDQNEFHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYG 102
Query: 123 QTGTGKTFTM----EGSQMER--GIMQNAFRQIFD---FKQKEKRHKCIVECCYLELYQG 173
QTGTGK+++M G + GI+ A IF+ +Q+ + V ++E+Y
Sbjct: 103 QTGTGKSYSMGMTPPGEILPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNE 162
Query: 174 KIRDLLN 180
K DLL
Sbjct: 163 KPFDLLG 169
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target)
Length = 387
Score = 112 bits (279), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 73/198 (36%), Positives = 108/198 (54%), Gaps = 8/198 (4%)
Query: 290 VECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSVEEIENCRKKGYKSR 349
V + E+Y GK+ DLLN K + GL+ S +++ G R
Sbjct: 191 VYVTFFEIYNGKLFDLLNKKAKLRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACR 250
Query: 350 KTASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIHSKLNLVDLAGSECLQKSNATDIRLK 409
+ T+ N SSRSHA F + L+ K +H K +LVDLAG+E +++ D + +
Sbjct: 251 TSGQTFANSNSSRSHACFQIILRA------KGRMHGKFSLVDLAGNERGADTSSADRQTR 304
Query: 410 -ECCEINLSLLAVNKVISSTVAGKTYIPYRDSLLTQLLQDSF-GGNAKTLMIANIGPAAS 467
E EIN SLLA+ + I + K + P+R+S LTQ+L+DSF G N++T MIA I P S
Sbjct: 305 MEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIATISPGIS 364
Query: 468 TYKETLVTLEYANRAKKI 485
+ + TL TL YA+R K++
Sbjct: 365 SCEYTLNTLRYADRVKEL 382
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 87/184 (47%), Gaps = 14/184 (7%)
Query: 6 MKKLKRHNECRRTKSLHPNEHHQDENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSI 65
+K+ + EC P E H+ I V VR RP+N E +VI I + KCL +
Sbjct: 30 IKEFRATLECHPLTMTDPIEEHR---ICVCVRKRPLNKQELAKKEIDVISIPS--KCLLL 84
Query: 66 QYSTD-RLKPRQPGKARRFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQT 124
+ ++ + + + F FD + A+ +Y + RP+V + G T FAYGQT
Sbjct: 85 VHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQT 144
Query: 125 GTGKTFTMEGS------QMERGIMQNAFRQIFDFKQKEKRHKCIVE--CCYLELYQGKIR 176
G+GKT TM G +GI A R +F K + K +E + E+Y GK+
Sbjct: 145 GSGKTHTMGGDLSGKAQNASKGIYAMASRDVFLLKNQPCYRKLGLEVYVTFFEIYNGKLF 204
Query: 177 DLLN 180
DLLN
Sbjct: 205 DLLN 208
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With Mg-adp
pdb|1V8K|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With
Mg-Amppnp
Length = 410
Score = 109 bits (273), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 108/198 (54%), Gaps = 8/198 (4%)
Query: 290 VECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSVEEIENCRKKGYKSR 349
V + E+Y GK+ DLLN ++ + GL+ +++ G R
Sbjct: 211 VYVTFFEIYNGKVFDLLNKKAKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACR 270
Query: 350 KTASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIHSKLNLVDLAGSECLQKSNATDIRLK 409
+ T+ N SSRSHA F + L+ K +H K +LVDLAG+E +++ D + +
Sbjct: 271 TSGQTFANSNSSRSHACFQILLRT------KGRLHGKFSLVDLAGNERGADTSSADRQTR 324
Query: 410 -ECCEINLSLLAVNKVISSTVAGKTYIPYRDSLLTQLLQDSF-GGNAKTLMIANIGPAAS 467
E EIN SLLA+ + I + K + P+R+S LTQ+L+DSF G N++T MIA I P S
Sbjct: 325 MEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGIS 384
Query: 468 TYKETLVTLEYANRAKKI 485
+ + TL TL YA+R K++
Sbjct: 385 SCEYTLNTLRYADRVKEL 402
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 87/184 (47%), Gaps = 14/184 (7%)
Query: 6 MKKLKRHNECRRTKSLHPNEHHQDENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSI 65
+K+ + EC P E H+ I V VR RP+N E +VI + + KCL +
Sbjct: 50 IKEFRVTMECSPLTVTDPIEEHR---ICVCVRKRPLNKQELAKKEIDVISVPS--KCLLL 104
Query: 66 QYSTD-RLKPRQPGKARRFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQT 124
+ ++ + + + F FD + A+ +Y + RP+V + G T FAYGQT
Sbjct: 105 VHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQT 164
Query: 125 GTGKTFTMEGS------QMERGIMQNAFRQIFDFKQKEKRHKCIVE--CCYLELYQGKIR 176
G+GKT TM G +GI A R +F K + + +E + E+Y GK+
Sbjct: 165 GSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVF 224
Query: 177 DLLN 180
DLLN
Sbjct: 225 DLLN 228
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Adp
pdb|3DCB|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Amppnp
pdb|3DCO|N Chain N, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
Length = 344
Score = 108 bits (271), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 71/194 (36%), Positives = 104/194 (53%), Gaps = 12/194 (6%)
Query: 290 VECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSVEEIENCRKKGYKSR 349
V ++E+Y K DLL S P + A+ C+ + S ++ + + G ++R
Sbjct: 152 VYASFIEIYNEKPFDLLG-STPHMPMVAAR----CQRCTCLPLHSQADLHHILELGTRNR 206
Query: 350 KTASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIHSKLNLVDLAGSECLQKSNATDIRLK 409
+ T N SSRSHAI + +K SKT HS++N+VDLAGSE ++++ + +
Sbjct: 207 RVRPTNMNSNSSRSHAIVTIHVK---SKTH----HSRMNIVDLAGSEGVRRTGHEGVARQ 259
Query: 410 ECCEINLSLLAVNKVISSTVAGKTYIPYRDSLLTQLLQDSFGGNAKTLMIANIGPAASTY 469
E INL LL++NKV+ S AG T IPYRDS+LT +LQ S + +A I P
Sbjct: 260 EGVNINLGLLSINKVVMSMAAGHTVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDL 319
Query: 470 KETLVTLEYANRAK 483
ETL TL + AK
Sbjct: 320 SETLSTLRFGTSAK 333
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 62/127 (48%), Gaps = 14/127 (11%)
Query: 68 STDRLKPRQPGKA-----RRFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYG 122
S + P GK+ F FD + +Q E+Y+ + P+V+ +L G+ T AYG
Sbjct: 43 SVVQFPPWSDGKSLIVDQNEFHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYG 102
Query: 123 QTGTGKTFTM----EGSQMER--GIMQNAFRQIFD---FKQKEKRHKCIVECCYLELYQG 173
QTGTGK+++M G + GI+ A IF+ +Q+ + V ++E+Y
Sbjct: 103 QTGTGKSYSMGMTPPGEILPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNE 162
Query: 174 KIRDLLN 180
K DLL
Sbjct: 163 KPFDLLG 169
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex
Length = 331
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 108/198 (54%), Gaps = 8/198 (4%)
Query: 290 VECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSVEEIENCRKKGYKSR 349
V + E+Y GK+ DLLN ++ + GL+ +++ G R
Sbjct: 139 VYVTFFEIYNGKVFDLLNKKAKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACR 198
Query: 350 KTASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIHSKLNLVDLAGSECLQKSNATDIRLK 409
+ T+ N SSRSHA F + L+ K +H K +LVDLAG+E +++ D + +
Sbjct: 199 TSGQTFANSNSSRSHACFQILLRT------KGRLHGKFSLVDLAGNERGADTSSADRQTR 252
Query: 410 -ECCEINLSLLAVNKVISSTVAGKTYIPYRDSLLTQLLQDSF-GGNAKTLMIANIGPAAS 467
E EIN SLLA+ + I + K + P+R+S LTQ+L+DSF G N++T MIA I P S
Sbjct: 253 MEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGIS 312
Query: 468 TYKETLVTLEYANRAKKI 485
+ + TL TL YA+R K++
Sbjct: 313 SCEYTLNTLRYADRVKEL 330
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 77/158 (48%), Gaps = 11/158 (6%)
Query: 32 IKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTD-RLKPRQPGKARRFTFDAVYG 90
I V VR RP+N E +VI + + KCL + + ++ + + + F FD +
Sbjct: 1 ICVCVRKRPLNKQELAKKEIDVISVPS--KCLLLVHEPKLKVDLTKYLENQAFCFDFAFD 58
Query: 91 MQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGS------QMERGIMQN 144
A+ +Y + RP+V + G T FAYGQTG+GKT TM G +GI
Sbjct: 59 ETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAM 118
Query: 145 AFRQIFDFKQKEKRHKCIVE--CCYLELYQGKIRDLLN 180
A R +F K + + +E + E+Y GK+ DLLN
Sbjct: 119 ASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLN 156
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/196 (35%), Positives = 106/196 (54%), Gaps = 5/196 (2%)
Query: 294 YLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSVEEIENCRKKGYKSRKTAS 353
+ E+Y GK+ DLL + K + K L+ + + EE+ G RK
Sbjct: 143 FYEIYCGKLYDLLQKRKMVAALENGKKEVVVKDLKILRVLTKEELILKMIDGVLLRKIGV 202
Query: 354 TYFNDYSSRSHAIFIVTLKVLNSKTGKALIHSKLNLVDLAGSECLQKSNATDIRLK-ECC 412
ND SSRSHAI + LK +N T K+ +DLAGSE + + + + + +
Sbjct: 203 NSQNDESSRSHAILNIDLKDINKNTSLG----KIAFIDLAGSERGADTVSQNKQTQTDGA 258
Query: 413 EINLSLLAVNKVISSTVAGKTYIPYRDSLLTQLLQDSFGGNAKTLMIANIGPAASTYKET 472
IN SLLA+ + I + + K +IP+RDS LT++L+D F G +K++MIANI P S ++T
Sbjct: 259 NINRSLLALKECIRAMDSDKNHIPFRDSELTKVLRDIFVGKSKSIMIANISPTISCCEQT 318
Query: 473 LVTLEYANRAKKIKNA 488
L TL Y++R K N+
Sbjct: 319 LNTLRYSSRVKNKGNS 334
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/157 (34%), Positives = 79/157 (50%), Gaps = 12/157 (7%)
Query: 32 IKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARR--FTFDAVY 89
IKVVVR RP++ E+K ++I T K ++ R K R F D V+
Sbjct: 2 IKVVVRKRPLSELEKKKKDSDII---TVKNNCTLYIDEPRYKVDMTKYIERHEFIVDKVF 58
Query: 90 GMQATQTEIYENSVRPMVNHML-HGYNVTIFAYGQTGTGKTFTMEGSQM-----ERGIMQ 143
+YEN+++P++ + +G + FAYGQTG+GKT+TM GSQ GI Q
Sbjct: 59 DDTVDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQ 118
Query: 144 NAFRQIFDFKQ-KEKRHKCIVECCYLELYQGKIRDLL 179
A IF F +K + + + E+Y GK+ DLL
Sbjct: 119 YAAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLL 155
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In
Complex With Adp
Length = 359
Score = 95.5 bits (236), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 74/210 (35%), Positives = 110/210 (52%), Gaps = 12/210 (5%)
Query: 286 HKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLP-------CKGLRSVTCQSVEEI 338
H V YLE+Y + DLL+ + P + + +T+ KGL E+
Sbjct: 152 HAITVRVSYLEIYNESLFDLLS-TLPYVGPSVTPMTIVENPQGVFIKGLSVHLTSQEEDA 210
Query: 339 ENCRKKGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSKT--GKALIHSKLNLVDLAGSE 396
+ +G +R AS N SSRSH IF + L+ +S+T + I SK+NLVDLAGSE
Sbjct: 211 FSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEA-HSRTLSEEKYITSKINLVDLAGSE 269
Query: 397 CLQKSNATDIRLKECCEINLSLLAVNK-VISSTVAGKTYIPYRDSLLTQLLQDSFGGNAK 455
L KS + LKE IN SL + + +I+ + +IP+R LT L+DS GGN
Sbjct: 270 RLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLTHALKDSLGGNCN 329
Query: 456 TLMIANIGPAASTYKETLVTLEYANRAKKI 485
+++ NI A+ +ETL +L +A+R K +
Sbjct: 330 MVLVTNIYGEAAQLEETLSSLRFASRMKLV 359
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 55/101 (54%), Gaps = 4/101 (3%)
Query: 83 FTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQ---MER 139
F D V A+Q +YE + +V+ L GYN TI YGQTG GKT+TM G+ R
Sbjct: 74 FKLDGVL-HDASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHR 132
Query: 140 GIMQNAFRQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLN 180
GI+ A +Q+F ++ H V YLE+Y + DLL+
Sbjct: 133 GILPRALQQVFRMIEERPTHAITVRVSYLEIYNESLFDLLS 173
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster
Length = 420
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 105/194 (54%), Gaps = 10/194 (5%)
Query: 290 VECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSVEEIENCRKKGYKS- 348
++ +LE+Y + DLL+ + + AK + ++T ++V + + R + +
Sbjct: 197 IKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAK 256
Query: 349 --RKTASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIH-SKLNLVDLAGSECLQKSNATD 405
R TAST N+ SSRSHA+ L+++ K I +NLVDLAGSE S T
Sbjct: 257 MNRATASTAGNERSSRSHAV--TKLELIGRHAEKQEISVGSINLVDLAGSE----SPKTS 310
Query: 406 IRLKECCEINLSLLAVNKVISSTVAGKTYIPYRDSLLTQLLQDSFGGNAKTLMIANIGPA 465
R+ E IN SL + VI + + + +IPYR+S LT LL S GGN+KTLM N+ P
Sbjct: 311 TRMTETKNINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPF 370
Query: 466 ASTYKETLVTLEYA 479
++E++ +L +A
Sbjct: 371 QDCFQESVKSLRFA 384
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 61/100 (61%), Gaps = 3/100 (3%)
Query: 83 FTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQMERGIM 142
F+FD V+ ++Q++I+E V P++ L GYN+ IFAYGQTG+GKT+TM+G G++
Sbjct: 116 FSFDQVFHPLSSQSDIFE-MVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVI 174
Query: 143 QNAFRQIFDFKQKEKR--HKCIVECCYLELYQGKIRDLLN 180
+FD + + + ++ +LE+Y + DLL+
Sbjct: 175 PRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLS 214
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d
pdb|3U06|B Chain B, Crystal Structure Of The Kinesin-14 Ncdg347d
Length = 412
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 105/194 (54%), Gaps = 10/194 (5%)
Query: 290 VECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSVEEIENCRKKGYKS- 348
++ +LE+Y + DLL+ + + AK + ++T ++V + + R + +
Sbjct: 189 IKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAK 248
Query: 349 --RKTASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIH-SKLNLVDLAGSECLQKSNATD 405
R TAST N+ SSRSHA+ L+++ K I +NLVDLAGSE S T
Sbjct: 249 MNRATASTAGNERSSRSHAV--TKLELIGRHAEKQEISVGSINLVDLAGSE----SPKTS 302
Query: 406 IRLKECCEINLSLLAVNKVISSTVAGKTYIPYRDSLLTQLLQDSFGGNAKTLMIANIGPA 465
R+ E IN SL + VI + + + +IPYR+S LT LL S GGN+KTLM N+ P
Sbjct: 303 TRMTETKNINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPF 362
Query: 466 ASTYKETLVTLEYA 479
++E++ +L +A
Sbjct: 363 QDCFQESVKSLRFA 376
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 83/172 (48%), Gaps = 23/172 (13%)
Query: 19 KSLHPNEHHQDENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPG 78
K LH +NI+V R RP ++ + + C + Y + Q
Sbjct: 48 KELHNTVMDLRDNIRVFCRIRP------------PLESEENRMCCTWTYHDESTVELQSI 95
Query: 79 KARR--------FTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTF 130
A+ F+FD V+ ++Q++I+E V P++ L GYN+ IFAYGQTG+GKT+
Sbjct: 96 DAQAKSKMGQQIFSFDQVFHPLSSQSDIFE-MVSPLIQSALDGYNICIFAYGQTGSGKTY 154
Query: 131 TMEGSQMERGIMQNAFRQIFDFKQKEKR--HKCIVECCYLELYQGKIRDLLN 180
TM+G G++ +FD + + + ++ +LE+Y + DLL+
Sbjct: 155 TMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLS 206
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant
pdb|3L1C|B Chain B, Kinesin-14 Protein Ncd, T436s Mutant
Length = 383
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 105/194 (54%), Gaps = 10/194 (5%)
Query: 290 VECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSVEEIENCRKKGYKS- 348
++ +LE+Y + DLL+ + + AK + ++T ++V + + R + +
Sbjct: 186 IKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAK 245
Query: 349 --RKTASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIH-SKLNLVDLAGSECLQKSNATD 405
R TAST N+ SSRSHA+ L+++ K I +NLVDLAGSE S T
Sbjct: 246 MNRATASTAGNERSSRSHAV--TKLELIGRHAEKQEISVGSINLVDLAGSE----SPKTS 299
Query: 406 IRLKECCEINLSLLAVNKVISSTVAGKTYIPYRDSLLTQLLQDSFGGNAKTLMIANIGPA 465
R+ E IN SL + VI + + + +IPYR+S LT LL S GGN+KTLM N+ P
Sbjct: 300 TRMTETKNINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPF 359
Query: 466 ASTYKETLVTLEYA 479
++E++ +L +A
Sbjct: 360 QDCFQESVKSLRFA 373
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 61/100 (61%), Gaps = 3/100 (3%)
Query: 83 FTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQMERGIM 142
F+FD V+ ++Q++I+E V P++ L GYN+ IFAYGQ+G+GKT+TM+G G++
Sbjct: 105 FSFDQVFHPLSSQSDIFE-MVSPLIQSALDGYNICIFAYGQSGSGKTYTMDGVPESVGVI 163
Query: 143 QNAFRQIFDFKQKEKR--HKCIVECCYLELYQGKIRDLLN 180
+FD + + + ++ +LE+Y + DLL+
Sbjct: 164 PRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLS 203
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|B Chain B, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|C Chain C, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
Length = 406
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 105/194 (54%), Gaps = 10/194 (5%)
Query: 290 VECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSVEEIENCRKKGYKS- 348
++ +LE+Y + DLL+ + + AK + ++T ++V + + R + +
Sbjct: 183 IKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAK 242
Query: 349 --RKTASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIH-SKLNLVDLAGSECLQKSNATD 405
R TAST N+ SSRSHA+ L+++ K I +NLVDLAGSE S T
Sbjct: 243 MNRATASTAGNERSSRSHAV--TKLELIGRHAEKQEISVGSINLVDLAGSE----SPKTS 296
Query: 406 IRLKECCEINLSLLAVNKVISSTVAGKTYIPYRDSLLTQLLQDSFGGNAKTLMIANIGPA 465
R+ E IN SL + VI + + + +IPYR+S LT LL S GGN+KTLM N+ P
Sbjct: 297 TRMTETKNINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPF 356
Query: 466 ASTYKETLVTLEYA 479
++E++ +L +A
Sbjct: 357 QDCFQESVKSLRFA 370
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 61/100 (61%), Gaps = 3/100 (3%)
Query: 83 FTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQMERGIM 142
F+FD V+ ++Q++I+E V P++ L GYN+ IFAYGQTG+GKT+TM+G G++
Sbjct: 102 FSFDQVFHPLSSQSDIFE-MVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVI 160
Query: 143 QNAFRQIFDFKQKEKR--HKCIVECCYLELYQGKIRDLLN 180
+FD + + + ++ +LE+Y + DLL+
Sbjct: 161 PRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLS 200
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
pdb|1N6M|B Chain B, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
Length = 409
Score = 88.6 bits (218), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 104/194 (53%), Gaps = 10/194 (5%)
Query: 290 VECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSVEEIENCRKKGYKS- 348
++ +LE+Y + DLL+ + + AK + ++T ++V + + R + +
Sbjct: 186 IKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAK 245
Query: 349 --RKTASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIH-SKLNLVDLAGSECLQKSNATD 405
R TAST N+ SSRSHA+ L+++ K I +NLVDLAGSE S T
Sbjct: 246 MNRATASTAGNERSSRSHAV--TKLELIGRHAEKQEISVGSINLVDLAGSE----SPKTS 299
Query: 406 IRLKECCEINLSLLAVNKVISSTVAGKTYIPYRDSLLTQLLQDSFGGNAKTLMIANIGPA 465
R+ E I SL + VI + + + +IPYR+S LT LL S GGN+KTLM N+ P
Sbjct: 300 TRMTETKNIKRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPF 359
Query: 466 ASTYKETLVTLEYA 479
++E++ +L +A
Sbjct: 360 QDCFQESVKSLRFA 373
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 61/100 (61%), Gaps = 3/100 (3%)
Query: 83 FTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQMERGIM 142
F+FD V+ ++Q++I+E V P++ L GYN+ IFAYGQTG+GKT+TM+G G++
Sbjct: 105 FSFDQVFHPLSSQSDIFE-MVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVI 163
Query: 143 QNAFRQIFDFKQKEKR--HKCIVECCYLELYQGKIRDLLN 180
+FD + + + ++ +LE+Y + DLL+
Sbjct: 164 PRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLS 203
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member C1
Length = 376
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 104/206 (50%), Gaps = 15/206 (7%)
Query: 292 CCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSVEEIE-NCRKK------ 344
Y+E+Y +RDLL + ++ G +T + + +C K+
Sbjct: 172 ASYVEIYNETVRDLLATGTRKGQGGECEIRRAGPGSEELTVTNARYVPVSCEKEVDALLH 231
Query: 345 -GYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSKTGKAL-IHSKLNLVDLAGSECLQKSN 402
++R A T N+ SSRSH++F L++ + + L + L+LVDLAGSE L
Sbjct: 232 LARQNRAVARTAQNERSSRSHSVF--QLQISGEHSSRGLQCGAPLSLVDLAGSERLDPGL 289
Query: 403 ATDI----RLKECCEINLSLLAVNKVISSTVAGKTYIPYRDSLLTQLLQDSFGGNAKTLM 458
A RL+E IN SL + VI + ++++PYR+S LT LLQ+S GG+AK LM
Sbjct: 290 ALGPGERERLRETQAINSSLSTLGLVIMALSNKESHVPYRNSKLTYLLQNSLGGSAKMLM 349
Query: 459 IANIGPAASTYKETLVTLEYANRAKK 484
NI P E+L +L +A++ +
Sbjct: 350 FVNISPLEENVSESLNSLRFASKVNQ 375
Score = 78.6 bits (192), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 80/168 (47%), Gaps = 23/168 (13%)
Query: 31 NIKVVVRCRPMNVPERKAHVENVIKIDTTKKC-------LSIQYSTDR-----LKPRQPG 78
NI+V R RP+ +P ++ + LS+ S +R P P
Sbjct: 23 NIRVFCRVRPV-LPGEPTPPPGLLLFPSGPGGPSDPPTRLSLSRSDERRGTLSGAPAPPP 81
Query: 79 KARRFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGS--- 135
+ F+FD V+ + Q E++E + +V L GY V IFAYGQTG+GKTFTMEG
Sbjct: 82 R-HDFSFDRVFPPGSGQDEVFEE-IAMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGG 139
Query: 136 --QMERGIMQNAFRQIFDFKQKEKRHKCIVE--CCYLELYQGKIRDLL 179
Q+E G++ A R +F Q+ Y+E+Y +RDLL
Sbjct: 140 DPQLE-GLIPRALRHLFSVAQELSGQGWTYSFVASYVEIYNETVRDLL 186
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus
pdb|3KIN|A Chain A, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|C Chain C, Kinesin (Dimeric) From Rattus Norvegicus
Length = 238
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 63/116 (54%), Gaps = 10/116 (8%)
Query: 78 GKARRFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQM 137
G+ + + FD V TQ ++Y + +V +L GYN TIFAYGQT +GKT TMEG
Sbjct: 41 GQGKPYVFDRVLPPNTTQEQVYNACAKQIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLH 100
Query: 138 ERGIM-------QNAFRQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTL 186
+ +M + F I+ + + H ++ Y E+Y KIRDLL+VS+ L
Sbjct: 101 DPQLMGIIPRIAHDIFDHIYSMDENLEFH---IKVSYFEIYLDKIRDLLDVSKTNL 153
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 64/108 (59%), Gaps = 2/108 (1%)
Query: 290 VECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLP-CKGLRSVTCQSVEEIENCRKKGYKS 348
++ Y E+Y KIRDLL+VS+ L + K +P KG S EE+ + +G +
Sbjct: 130 IKVSYFEIYLDKIRDLLDVSKTNLAVHEDKNRVPYVKGCTERFVSSPEEVMDVIDEGKAN 189
Query: 349 RKTASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIHSKLNLVDLAGSE 396
R A T N++SSRSH+IF++ +K N +T K L KL LVDLAGSE
Sbjct: 190 RHVAVTNMNEHSSRSHSIFLINIKQENVETEKKL-SGKLYLVDLAGSE 236
>pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|D Chain D, Kinesin (Dimeric) From Rattus Norvegicus
Length = 117
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 415 NLSLLAVNKVISSTVAG-KTYIPYRDSLLTQLLQDSFGGNAKTLMIANIGPAASTYKETL 473
N SL A+ VIS+ G KT++PYRDS +T++LQDS GGN +T ++ P+ ET
Sbjct: 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETK 60
Query: 474 VTLEYANRAKKIKNAPNINF 493
TL + RAK IKN ++N
Sbjct: 61 STLMFGQRAKTIKNTVSVNL 80
>pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus
Length = 100
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 414 INLSLLAVNKVISSTVAG-KTYIPYRDSLLTQLLQDSFGGNAKTLMIANIGPAASTYKET 472
IN SL A+ VIS+ G KT++PYRDS +T++LQDS GN +T ++ P+ ET
Sbjct: 4 INKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAET 63
Query: 473 LVTLEYANRAKKIKNAPNINF 493
TL + RAK IKN ++N
Sbjct: 64 KSTLMFGQRAKTIKNTVSVNL 84
>pdb|3K0C|C Chain C, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0C|D Chain D, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 519
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 23/92 (25%)
Query: 118 IFAYGQTGTGKT-------------------FTMEGSQMERGIMQNAFRQIFDFKQKEKR 158
I A G TGTGKT F E S+ + +++NA+ DF++ E++
Sbjct: 284 ILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQ--LLRNAYSWGMDFEEMERQ 341
Query: 159 HKCIVECCYLELYQGKIRDLLNVSRPTLFDTK 190
+ + C Y E + D L + + + D K
Sbjct: 342 NLLKIVCAYPE--SAGLEDHLQIIKSEINDFK 371
>pdb|3K0A|B Chain B, Crystal Structure Of The Phosphorylation-Site Mutant S431a
Of The Kaic Circadian Clock Protein
pdb|3K0A|C Chain C, Crystal Structure Of The Phosphorylation-Site Mutant S431a
Of The Kaic Circadian Clock Protein
pdb|3K0A|D Chain D, Crystal Structure Of The Phosphorylation-Site Mutant S431a
Of The Kaic Circadian Clock Protein
pdb|3K0A|E Chain E, Crystal Structure Of The Phosphorylation-Site Mutant S431a
Of The Kaic Circadian Clock Protein
pdb|3K0A|F Chain F, Crystal Structure Of The Phosphorylation-Site Mutant S431a
Of The Kaic Circadian Clock Protein
Length = 519
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 23/92 (25%)
Query: 118 IFAYGQTGTGKT-------------------FTMEGSQMERGIMQNAFRQIFDFKQKEKR 158
I A G TGTGKT F E S+ + +++NA+ DF++ E++
Sbjct: 284 ILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQ--LLRNAYSWGMDFEEMERQ 341
Query: 159 HKCIVECCYLELYQGKIRDLLNVSRPTLFDTK 190
+ + C Y E + D L + + + D K
Sbjct: 342 NLLKIVCAYPE--SAGLEDHLQIIKSEINDFK 371
>pdb|3K0A|A Chain A, Crystal Structure Of The Phosphorylation-Site Mutant S431a
Of The Kaic Circadian Clock Protein
Length = 519
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 23/92 (25%)
Query: 118 IFAYGQTGTGKT-------------------FTMEGSQMERGIMQNAFRQIFDFKQKEKR 158
I A G TGTGKT F E S+ + +++NA+ DF++ E++
Sbjct: 284 ILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQ--LLRNAYSWGMDFEEMERQ 341
Query: 159 HKCIVECCYLELYQGKIRDLLNVSRPTLFDTK 190
+ + C Y E + D L + + + D K
Sbjct: 342 NLLKIVCAYPE--SAGLEDHLQIIKSEINDFK 371
>pdb|3JZM|A Chain A, Crystal Structure Of The Phosphorylation-Site Mutant T432a
Of The Kaic Circadian Clock Protein
pdb|3JZM|B Chain B, Crystal Structure Of The Phosphorylation-Site Mutant T432a
Of The Kaic Circadian Clock Protein
pdb|3JZM|C Chain C, Crystal Structure Of The Phosphorylation-Site Mutant T432a
Of The Kaic Circadian Clock Protein
pdb|3JZM|D Chain D, Crystal Structure Of The Phosphorylation-Site Mutant T432a
Of The Kaic Circadian Clock Protein
pdb|3JZM|E Chain E, Crystal Structure Of The Phosphorylation-Site Mutant T432a
Of The Kaic Circadian Clock Protein
pdb|3JZM|F Chain F, Crystal Structure Of The Phosphorylation-Site Mutant T432a
Of The Kaic Circadian Clock Protein
Length = 519
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 23/92 (25%)
Query: 118 IFAYGQTGTGKT-------------------FTMEGSQMERGIMQNAFRQIFDFKQKEKR 158
I A G TGTGKT F E S+ + +++NA+ DF++ E++
Sbjct: 284 ILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQ--LLRNAYSWGMDFEEMERQ 341
Query: 159 HKCIVECCYLELYQGKIRDLLNVSRPTLFDTK 190
+ + C Y E + D L + + + D K
Sbjct: 342 NLLKIVCAYPE--SAGLEDHLQIIKSEINDFK 371
>pdb|1U9I|C Chain C, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|1U9I|D Chain D, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|2GBL|C Chain C, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
pdb|2GBL|D Chain D, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
Length = 519
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 23/92 (25%)
Query: 118 IFAYGQTGTGKT-------------------FTMEGSQMERGIMQNAFRQIFDFKQKEKR 158
I A G TGTGKT F E S+ + +++NA+ DF++ E++
Sbjct: 284 ILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQ--LLRNAYSWGMDFEEMERQ 341
Query: 159 HKCIVECCYLELYQGKIRDLLNVSRPTLFDTK 190
+ + C Y E + D L + + + D K
Sbjct: 342 NLLKIVCAYPE--SAGLEDHLQIIKSEINDFK 371
>pdb|3K0F|A Chain A, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 519
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 23/92 (25%)
Query: 118 IFAYGQTGTGKT-------------------FTMEGSQMERGIMQNAFRQIFDFKQKEKR 158
I A G TGTGKT F E S+ + +++NA+ DF++ E++
Sbjct: 284 ILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQ--LLRNAYSWGMDFEEMERQ 341
Query: 159 HKCIVECCYLELYQGKIRDLLNVSRPTLFDTK 190
+ + C Y E + D L + + + D K
Sbjct: 342 NLLKIVCAYPE--SAGLEDHLQIIKSEINDFK 371
>pdb|3K0C|A Chain A, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0C|B Chain B, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0C|E Chain E, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0C|F Chain F, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 519
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 23/92 (25%)
Query: 118 IFAYGQTGTGKT-------------------FTMEGSQMERGIMQNAFRQIFDFKQKEKR 158
I A G TGTGKT F E S+ + +++NA+ DF++ E++
Sbjct: 284 ILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQ--LLRNAYSWGMDFEEMERQ 341
Query: 159 HKCIVECCYLELYQGKIRDLLNVSRPTLFDTK 190
+ + C Y E + D L + + + D K
Sbjct: 342 NLLKIVCAYPE--SAGLEDHLQIIKSEINDFK 371
>pdb|3K0F|B Chain B, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0F|C Chain C, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0F|D Chain D, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0F|E Chain E, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0F|F Chain F, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 519
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 23/92 (25%)
Query: 118 IFAYGQTGTGKT-------------------FTMEGSQMERGIMQNAFRQIFDFKQKEKR 158
I A G TGTGKT F E S+ + +++NA+ DF++ E++
Sbjct: 284 ILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQ--LLRNAYSWGMDFEEMERQ 341
Query: 159 HKCIVECCYLELYQGKIRDLLNVSRPTLFDTK 190
+ + C Y E + D L + + + D K
Sbjct: 342 NLLKIVCAYPE--SAGLEDHLQIIKSEINDFK 371
>pdb|3K0E|A Chain A, Crystal Structure Of The Phosphorylation-Site Mutant T426n
Of The Kaic Circadian Clock Protein
pdb|3K0E|B Chain B, Crystal Structure Of The Phosphorylation-Site Mutant T426n
Of The Kaic Circadian Clock Protein
pdb|3K0E|C Chain C, Crystal Structure Of The Phosphorylation-Site Mutant T426n
Of The Kaic Circadian Clock Protein
pdb|3K0E|D Chain D, Crystal Structure Of The Phosphorylation-Site Mutant T426n
Of The Kaic Circadian Clock Protein
pdb|3K0E|E Chain E, Crystal Structure Of The Phosphorylation-Site Mutant T426n
Of The Kaic Circadian Clock Protein
pdb|3K0E|F Chain F, Crystal Structure Of The Phosphorylation-Site Mutant T426n
Of The Kaic Circadian Clock Protein
Length = 519
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 23/92 (25%)
Query: 118 IFAYGQTGTGKT-------------------FTMEGSQMERGIMQNAFRQIFDFKQKEKR 158
I A G TGTGKT F E S+ + +++NA+ DF++ E++
Sbjct: 284 ILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQ--LLRNAYSWGMDFEEMERQ 341
Query: 159 HKCIVECCYLELYQGKIRDLLNVSRPTLFDTK 190
+ + C Y E + D L + + + D K
Sbjct: 342 NLLKIVCAYPE--SAGLEDHLQIIKSEINDFK 371
>pdb|1U9I|A Chain A, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|1U9I|B Chain B, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|1U9I|E Chain E, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|1U9I|F Chain F, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|2GBL|A Chain A, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
pdb|2GBL|B Chain B, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
pdb|2GBL|E Chain E, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
pdb|2GBL|F Chain F, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
pdb|3DVL|A Chain A, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
pdb|3DVL|B Chain B, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
pdb|3DVL|C Chain C, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
pdb|3DVL|D Chain D, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
pdb|3DVL|E Chain E, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
pdb|3DVL|F Chain F, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
Length = 519
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 23/92 (25%)
Query: 118 IFAYGQTGTGKT-------------------FTMEGSQMERGIMQNAFRQIFDFKQKEKR 158
I A G TGTGKT F E S+ + +++NA+ DF++ E++
Sbjct: 284 ILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQ--LLRNAYSWGMDFEEMERQ 341
Query: 159 HKCIVECCYLELYQGKIRDLLNVSRPTLFDTK 190
+ + C Y E + D L + + + D K
Sbjct: 342 NLLKIVCAYPE--SAGLEDHLQIIKSEINDFK 371
>pdb|3K09|A Chain A, Crystal Structure Of The Phosphorylation-Site Mutant S431d
Of The Kaic Circadian Clock Protein
pdb|3K09|B Chain B, Crystal Structure Of The Phosphorylation-Site Mutant S431d
Of The Kaic Circadian Clock Protein
pdb|3K09|E Chain E, Crystal Structure Of The Phosphorylation-Site Mutant S431d
Of The Kaic Circadian Clock Protein
Length = 519
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 23/92 (25%)
Query: 118 IFAYGQTGTGKT-------------------FTMEGSQMERGIMQNAFRQIFDFKQKEKR 158
I A G TGTGKT F E S+ + +++NA+ DF++ E++
Sbjct: 284 ILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQ--LLRNAYSWGMDFEEMERQ 341
Query: 159 HKCIVECCYLELYQGKIRDLLNVSRPTLFDTK 190
+ + C Y E + D L + + + D K
Sbjct: 342 NLLKIVCAYPE--SAGLEDHLQIIKSEINDFK 371
>pdb|1TF7|A Chain A, Crystal Structure Of Circadian Clock Protein Kaic
pdb|1TF7|B Chain B, Crystal Structure Of Circadian Clock Protein Kaic
pdb|1TF7|C Chain C, Crystal Structure Of Circadian Clock Protein Kaic
pdb|1TF7|D Chain D, Crystal Structure Of Circadian Clock Protein Kaic
pdb|1TF7|E Chain E, Crystal Structure Of Circadian Clock Protein Kaic
pdb|1TF7|F Chain F, Crystal Structure Of Circadian Clock Protein Kaic
Length = 525
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 23/92 (25%)
Query: 118 IFAYGQTGTGKT-------------------FTMEGSQMERGIMQNAFRQIFDFKQKEKR 158
I A G TGTGKT F E S+ + +++NA+ DF++ E++
Sbjct: 284 ILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQ--LLRNAYSWGMDFEEMERQ 341
Query: 159 HKCIVECCYLELYQGKIRDLLNVSRPTLFDTK 190
+ + C Y E + D L + + + D K
Sbjct: 342 NLLKIVCAYPE--SAGLEDHLQIIKSEINDFK 371
>pdb|3S1A|B Chain B, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431eT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3S1A|C Chain C, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431eT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3S1A|D Chain D, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431eT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3S1A|E Chain E, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431eT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 525
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 23/92 (25%)
Query: 118 IFAYGQTGTGKT-------------------FTMEGSQMERGIMQNAFRQIFDFKQKEKR 158
I A G TGTGKT F E S+ + +++NA+ DF++ E++
Sbjct: 284 ILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQ--LLRNAYSWGMDFEEMERQ 341
Query: 159 HKCIVECCYLELYQGKIRDLLNVSRPTLFDTK 190
+ + C Y E + D L + + + D K
Sbjct: 342 NLLKIVCAYPE--SAGLEDHLQIIKSEINDFK 371
>pdb|3K09|C Chain C, Crystal Structure Of The Phosphorylation-Site Mutant S431d
Of The Kaic Circadian Clock Protein
pdb|3K09|D Chain D, Crystal Structure Of The Phosphorylation-Site Mutant S431d
Of The Kaic Circadian Clock Protein
pdb|3K09|F Chain F, Crystal Structure Of The Phosphorylation-Site Mutant S431d
Of The Kaic Circadian Clock Protein
Length = 519
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 23/92 (25%)
Query: 118 IFAYGQTGTGKT-------------------FTMEGSQMERGIMQNAFRQIFDFKQKEKR 158
I A G TGTGKT F E S+ + +++NA+ DF++ E++
Sbjct: 284 ILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQ--LLRNAYSWGMDFEEMERQ 341
Query: 159 HKCIVECCYLELYQGKIRDLLNVSRPTLFDTK 190
+ + C Y E + D L + + + D K
Sbjct: 342 NLLKIVCAYPE--SAGLEDHLQIIKSEINDFK 371
>pdb|4IJM|A Chain A, Crystal Structure Of Circadian Clock Protein Kaic A422v
Mutant
pdb|4IJM|B Chain B, Crystal Structure Of Circadian Clock Protein Kaic A422v
Mutant
pdb|4IJM|C Chain C, Crystal Structure Of Circadian Clock Protein Kaic A422v
Mutant
pdb|4IJM|D Chain D, Crystal Structure Of Circadian Clock Protein Kaic A422v
Mutant
pdb|4IJM|E Chain E, Crystal Structure Of Circadian Clock Protein Kaic A422v
Mutant
pdb|4IJM|F Chain F, Crystal Structure Of Circadian Clock Protein Kaic A422v
Mutant
Length = 512
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 23/92 (25%)
Query: 118 IFAYGQTGTGKT-------------------FTMEGSQMERGIMQNAFRQIFDFKQKEKR 158
I A G TGTGKT F E S+ + +++NA+ DF++ E++
Sbjct: 271 ILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQ--LLRNAYSWGMDFEEMERQ 328
Query: 159 HKCIVECCYLELYQGKIRDLLNVSRPTLFDTK 190
+ + C Y E + D L + + + D K
Sbjct: 329 NLLKIVCAYPE--SAGLEDHLQIIKSEINDFK 358
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,403,855
Number of Sequences: 62578
Number of extensions: 599997
Number of successful extensions: 1762
Number of sequences better than 100.0: 85
Number of HSP's better than 100.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 1351
Number of HSP's gapped (non-prelim): 219
length of query: 560
length of database: 14,973,337
effective HSP length: 104
effective length of query: 456
effective length of database: 8,465,225
effective search space: 3860142600
effective search space used: 3860142600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)