Query psy7618
Match_columns 560
No_of_seqs 255 out of 1903
Neff 7.8
Searched_HMMs 46136
Date Fri Aug 16 22:57:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7618.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7618hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0243|consensus 100.0 2.5E-91 5.3E-96 771.3 33.2 369 26-518 45-425 (1041)
2 KOG4280|consensus 100.0 1.6E-91 3.5E-96 744.2 27.8 362 28-518 3-370 (574)
3 KOG0245|consensus 100.0 5.1E-90 1.1E-94 746.4 29.0 356 29-515 3-379 (1221)
4 KOG0241|consensus 100.0 2.8E-83 6.1E-88 682.0 31.0 401 29-553 3-439 (1714)
5 PLN03188 kinesin-12 family pro 100.0 1.5E-82 3.3E-87 707.5 34.5 353 29-518 97-467 (1320)
6 KOG0242|consensus 100.0 1.7E-82 3.6E-87 701.2 30.9 358 28-517 4-365 (675)
7 cd01370 KISc_KIP3_like Kinesin 100.0 1.6E-81 3.4E-86 653.0 32.5 328 31-485 1-338 (338)
8 KOG0240|consensus 100.0 1.4E-81 3E-86 650.4 30.0 332 28-495 5-341 (607)
9 cd01373 KISc_KLP2_like Kinesin 100.0 9E-81 2E-85 647.1 32.4 324 30-485 1-337 (337)
10 cd01368 KISc_KIF23_like Kinesi 100.0 1.2E-79 2.6E-84 640.2 33.1 328 30-483 1-345 (345)
11 cd01365 KISc_KIF1A_KIF1B Kines 100.0 6.5E-79 1.4E-83 638.4 34.6 338 30-492 1-356 (356)
12 cd01367 KISc_KIF2_like Kinesin 100.0 7.6E-79 1.6E-83 629.2 32.7 321 30-483 1-322 (322)
13 cd01364 KISc_BimC_Eg5 Kinesin 100.0 4.3E-78 9.2E-83 632.0 34.7 337 30-493 2-351 (352)
14 cd01371 KISc_KIF3 Kinesin moto 100.0 4.5E-78 9.8E-83 626.6 33.5 327 30-485 1-333 (333)
15 cd01376 KISc_KID_like Kinesin 100.0 2.2E-76 4.8E-81 610.4 32.7 315 31-483 1-319 (319)
16 cd01369 KISc_KHC_KIF5 Kinesin 100.0 5.1E-76 1.1E-80 610.0 34.4 319 30-485 2-325 (325)
17 cd01374 KISc_CENP_E Kinesin mo 100.0 6E-76 1.3E-80 608.3 31.9 317 31-485 1-321 (321)
18 cd01372 KISc_KIF4 Kinesin moto 100.0 7.1E-76 1.5E-80 613.1 32.4 321 31-486 2-341 (341)
19 KOG0239|consensus 100.0 1.4E-76 2.9E-81 651.6 23.4 348 14-492 298-647 (670)
20 cd01375 KISc_KIF9_like Kinesin 100.0 4.2E-75 9E-80 604.2 33.1 327 31-483 1-334 (334)
21 cd01366 KISc_C_terminal Kinesi 100.0 1.5E-73 3.3E-78 592.8 33.8 328 29-488 1-329 (329)
22 KOG0247|consensus 100.0 4.1E-74 8.8E-79 608.2 29.9 399 26-491 27-442 (809)
23 smart00129 KISc Kinesin motor, 100.0 5.9E-72 1.3E-76 582.6 33.5 330 31-492 1-335 (335)
24 cd00106 KISc Kinesin motor dom 100.0 1.6E-70 3.5E-75 570.4 33.8 323 31-483 1-328 (328)
25 PF00225 Kinesin: Kinesin moto 100.0 3.6E-71 7.9E-76 576.9 25.8 323 37-485 1-335 (335)
26 KOG0246|consensus 100.0 5.3E-70 1.1E-74 562.1 27.2 333 26-488 204-544 (676)
27 KOG0244|consensus 100.0 5.4E-69 1.2E-73 585.4 8.0 341 38-515 1-348 (913)
28 COG5059 KIP1 Kinesin-like prot 100.0 1.6E-61 3.6E-66 530.1 32.9 325 25-493 17-344 (568)
29 cd01363 Motor_domain Myosin an 100.0 6.9E-52 1.5E-56 395.8 18.0 125 340-464 60-186 (186)
30 COG5059 KIP1 Kinesin-like prot 98.2 9.2E-09 2E-13 114.0 -11.7 81 344-429 486-566 (568)
31 PF00308 Bac_DnaA: Bacterial d 94.6 0.011 2.5E-07 57.9 0.6 50 82-134 4-53 (219)
32 COG2805 PilT Tfp pilus assembl 94.0 0.025 5.5E-07 57.1 1.6 32 103-134 113-144 (353)
33 PRK06893 DNA replication initi 92.7 0.068 1.5E-06 52.7 2.2 48 81-134 11-58 (229)
34 COG0556 UvrB Helicase subunit 92.4 0.23 5E-06 53.8 5.9 90 82-176 4-101 (663)
35 PRK06620 hypothetical protein; 92.2 0.055 1.2E-06 52.8 0.8 50 81-134 11-63 (214)
36 COG2804 PulE Type II secretory 92.0 0.23 4.9E-06 53.8 5.3 32 103-134 246-277 (500)
37 PRK12377 putative replication 91.8 0.079 1.7E-06 53.0 1.4 50 83-134 71-120 (248)
38 PRK08116 hypothetical protein; 90.0 0.13 2.8E-06 52.1 1.1 52 81-134 80-133 (268)
39 PRK14086 dnaA chromosomal repl 90.0 0.11 2.4E-06 58.1 0.6 51 81-134 283-333 (617)
40 PRK07952 DNA replication prote 89.9 0.17 3.7E-06 50.4 1.8 51 82-134 68-118 (244)
41 PRK09087 hypothetical protein; 89.8 0.14 2.9E-06 50.5 1.1 47 81-133 16-62 (226)
42 PRK08084 DNA replication initi 89.6 0.16 3.4E-06 50.4 1.4 48 81-134 17-64 (235)
43 PRK06526 transposase; Provisio 89.1 0.14 3.1E-06 51.3 0.7 41 89-134 77-117 (254)
44 PRK06835 DNA replication prote 89.1 0.14 3.1E-06 53.3 0.6 37 96-134 166-202 (329)
45 PRK05642 DNA replication initi 89.0 0.23 5E-06 49.2 2.0 47 81-134 14-64 (234)
46 PRK14088 dnaA chromosomal repl 89.0 0.16 3.5E-06 55.2 0.9 50 80-134 99-149 (440)
47 PRK00149 dnaA chromosomal repl 88.2 0.21 4.5E-06 54.5 1.2 53 79-134 115-167 (450)
48 PF04851 ResIII: Type III rest 87.9 0.21 4.5E-06 46.4 0.8 29 106-134 15-44 (184)
49 TIGR00362 DnaA chromosomal rep 87.8 0.22 4.7E-06 53.5 1.0 52 80-134 104-155 (405)
50 PF05673 DUF815: Protein of un 87.7 0.39 8.4E-06 47.6 2.6 47 83-134 24-71 (249)
51 COG5008 PilU Tfp pilus assembl 86.9 0.41 8.8E-06 47.7 2.2 37 97-133 108-145 (375)
52 PF13245 AAA_19: Part of AAA d 86.9 0.27 5.9E-06 39.6 0.9 27 107-134 3-29 (76)
53 TIGR03420 DnaA_homol_Hda DnaA 86.7 0.44 9.5E-06 46.4 2.4 48 81-134 10-57 (226)
54 PRK14087 dnaA chromosomal repl 86.6 0.26 5.7E-06 53.6 0.9 50 82-134 111-160 (450)
55 TIGR02928 orc1/cdc6 family rep 86.3 0.39 8.5E-06 50.5 1.9 46 86-132 11-57 (365)
56 PRK10436 hypothetical protein; 86.0 0.29 6.3E-06 53.4 0.8 29 106-134 209-237 (462)
57 PRK08903 DnaA regulatory inact 85.9 0.5 1.1E-05 46.3 2.3 49 81-134 13-61 (227)
58 COG0593 DnaA ATPase involved i 85.7 0.31 6.7E-06 52.0 0.8 53 79-134 80-132 (408)
59 PRK00411 cdc6 cell division co 85.1 0.48 1E-05 50.5 1.9 27 106-132 45-72 (394)
60 TIGR02533 type_II_gspE general 85.0 0.39 8.4E-06 52.8 1.1 29 106-134 233-261 (486)
61 TIGR02538 type_IV_pilB type IV 85.0 0.35 7.5E-06 54.3 0.8 29 106-134 307-335 (564)
62 cd00009 AAA The AAA+ (ATPases 84.8 0.44 9.5E-06 41.8 1.3 19 114-132 18-36 (151)
63 PRK08939 primosomal protein Dn 84.5 0.32 7E-06 50.2 0.3 51 83-134 124-175 (306)
64 PRK08727 hypothetical protein; 84.5 0.52 1.1E-05 46.6 1.7 19 116-134 42-60 (233)
65 PRK08181 transposase; Validate 84.2 0.65 1.4E-05 47.0 2.3 21 112-134 105-125 (269)
66 PF00437 T2SE: Type II/IV secr 84.1 0.44 9.5E-06 48.0 1.0 29 105-133 114-145 (270)
67 COG1484 DnaC DNA replication p 84.1 0.58 1.3E-05 46.9 1.9 51 81-134 74-124 (254)
68 TIGR01420 pilT_fam pilus retra 83.7 0.5 1.1E-05 49.6 1.3 30 105-134 112-141 (343)
69 TIGR02525 plasmid_TraJ plasmid 83.7 0.51 1.1E-05 50.0 1.3 29 105-134 140-168 (372)
70 cd00046 DEXDc DEAD-like helica 83.6 0.34 7.4E-06 42.1 -0.0 17 118-134 3-19 (144)
71 KOG0243|consensus 83.5 0.96 2.1E-05 52.9 3.5 25 286-310 180-204 (1041)
72 TIGR02524 dot_icm_DotB Dot/Icm 83.4 0.53 1.2E-05 49.7 1.3 26 109-134 128-153 (358)
73 cd01131 PilT Pilus retraction 83.2 0.39 8.6E-06 46.2 0.2 20 115-134 1-20 (198)
74 PF00270 DEAD: DEAD/DEAH box h 82.8 0.59 1.3E-05 42.9 1.2 27 106-134 7-33 (169)
75 PF13401 AAA_22: AAA domain; P 82.4 0.39 8.5E-06 42.2 -0.1 18 115-132 4-21 (131)
76 COG1474 CDC6 Cdc6-related prot 82.3 0.62 1.3E-05 49.3 1.3 26 107-132 33-59 (366)
77 cd01129 PulE-GspE PulE/GspE Th 82.0 0.62 1.4E-05 47.0 1.1 29 106-134 71-99 (264)
78 PF01935 DUF87: Domain of unkn 80.9 0.5 1.1E-05 46.3 0.0 18 117-134 25-42 (229)
79 KOG0239|consensus 80.7 4.9 0.00011 45.9 7.8 64 80-152 25-88 (670)
80 PF13604 AAA_30: AAA domain; P 80.3 0.8 1.7E-05 44.0 1.2 28 106-133 9-36 (196)
81 TIGR02782 TrbB_P P-type conjug 79.6 0.76 1.6E-05 47.3 0.9 31 103-134 121-151 (299)
82 smart00382 AAA ATPases associa 79.6 0.62 1.3E-05 40.3 0.2 19 116-134 3-21 (148)
83 PRK13894 conjugal transfer ATP 79.3 0.84 1.8E-05 47.4 1.0 29 104-133 138-166 (319)
84 PF01695 IstB_IS21: IstB-like 79.3 1.1 2.3E-05 42.4 1.7 20 115-134 47-66 (178)
85 PRK06921 hypothetical protein; 79.2 1 2.2E-05 45.5 1.6 32 103-134 102-136 (266)
86 PF12846 AAA_10: AAA-like doma 79.0 0.65 1.4E-05 46.9 0.1 20 115-134 1-20 (304)
87 TIGR03015 pepcterm_ATPase puta 78.7 1.2 2.5E-05 44.7 1.8 25 109-133 37-61 (269)
88 PRK12422 chromosomal replicati 77.9 1.2 2.5E-05 48.6 1.7 53 79-134 104-160 (445)
89 PTZ00112 origin recognition co 76.0 1.6 3.5E-05 50.7 2.2 29 105-133 769-799 (1164)
90 PF13479 AAA_24: AAA domain 75.9 1.1 2.3E-05 43.6 0.7 20 115-134 3-22 (213)
91 PF00448 SRP54: SRP54-type pro 75.7 0.94 2E-05 43.6 0.2 17 117-133 3-19 (196)
92 KOG0247|consensus 74.5 0.77 1.7E-05 51.5 -0.8 28 282-309 220-247 (809)
93 PRK13833 conjugal transfer pro 74.5 1.3 2.7E-05 46.1 0.8 28 105-133 135-162 (323)
94 cd01130 VirB11-like_ATPase Typ 74.4 1.3 2.9E-05 41.9 0.9 30 103-133 14-43 (186)
95 PF13207 AAA_17: AAA domain; P 74.3 1.4 3E-05 38.2 0.9 15 117-131 1-15 (121)
96 TIGR01242 26Sp45 26S proteasom 73.6 2.9 6.2E-05 44.2 3.2 19 115-133 156-174 (364)
97 PRK09183 transposase/IS protei 73.5 1.6 3.5E-05 43.8 1.3 21 112-134 101-121 (259)
98 PF13086 AAA_11: AAA domain; P 73.5 1.6 3.4E-05 42.1 1.2 27 107-134 10-36 (236)
99 KOG0989|consensus 73.4 1.9 4.1E-05 44.1 1.6 33 101-133 42-75 (346)
100 PF01637 Arch_ATPase: Archaeal 72.7 1.1 2.5E-05 43.1 -0.1 28 105-132 10-37 (234)
101 PF05970 PIF1: PIF1-like helic 72.6 1.8 3.9E-05 45.8 1.5 37 92-132 3-39 (364)
102 PF00004 AAA: ATPase family as 72.5 1.5 3.2E-05 38.2 0.7 15 118-132 1-15 (132)
103 PHA00729 NTP-binding motif con 72.2 2.6 5.5E-05 41.5 2.2 32 103-134 5-36 (226)
104 PF13671 AAA_33: AAA domain; P 71.6 1.7 3.7E-05 38.7 0.9 16 117-132 1-16 (143)
105 PF13191 AAA_16: AAA ATPase do 71.1 0.93 2E-05 42.2 -1.1 22 111-132 20-41 (185)
106 PRK13900 type IV secretion sys 70.9 1.8 3.9E-05 45.2 0.9 29 104-133 150-178 (332)
107 COG4962 CpaF Flp pilus assembl 70.6 2.1 4.5E-05 44.5 1.3 28 104-132 163-190 (355)
108 PF05496 RuvB_N: Holliday junc 70.3 4.3 9.4E-05 39.8 3.3 42 89-131 23-66 (233)
109 PRK12402 replication factor C 70.2 2.1 4.6E-05 44.3 1.3 43 84-134 13-55 (337)
110 PF02562 PhoH: PhoH-like prote 69.4 2.5 5.4E-05 41.0 1.5 19 114-132 18-36 (205)
111 TIGR00635 ruvB Holliday juncti 69.3 2.3 5E-05 43.5 1.3 44 89-133 3-48 (305)
112 PLN00020 ribulose bisphosphate 69.2 2.8 6.1E-05 44.2 1.9 51 81-131 110-164 (413)
113 smart00487 DEXDc DEAD-like hel 68.9 2.4 5.3E-05 39.1 1.3 25 109-134 19-43 (201)
114 PF00580 UvrD-helicase: UvrD/R 68.6 1.8 3.9E-05 43.9 0.3 22 113-134 11-32 (315)
115 KOG0242|consensus 68.5 2.3 5.1E-05 48.6 1.2 26 286-311 131-156 (675)
116 PRK13764 ATPase; Provisional 68.4 2.2 4.9E-05 47.9 1.1 24 111-134 253-276 (602)
117 PF01580 FtsK_SpoIIIE: FtsK/Sp 68.3 1.6 3.4E-05 41.9 -0.1 18 117-134 40-57 (205)
118 PRK06547 hypothetical protein; 68.2 3.7 8E-05 38.6 2.3 29 104-132 4-32 (172)
119 KOG0246|consensus 68.1 3.7 8E-05 45.0 2.5 19 112-130 298-318 (676)
120 PTZ00454 26S protease regulato 67.7 3.2 7E-05 44.5 2.1 51 82-132 141-196 (398)
121 PRK13851 type IV secretion sys 67.4 1.9 4E-05 45.3 0.1 30 104-134 152-181 (344)
122 TIGR00631 uvrb excinuclease AB 67.2 5.7 0.00012 45.5 4.0 89 83-176 2-98 (655)
123 PF00910 RNA_helicase: RNA hel 66.7 1.5 3.3E-05 37.5 -0.5 15 118-132 1-15 (107)
124 PF07724 AAA_2: AAA domain (Cd 66.4 2.4 5.2E-05 39.8 0.7 16 116-131 4-19 (171)
125 KOG0926|consensus 66.0 3.6 7.8E-05 47.0 2.0 19 114-132 270-288 (1172)
126 PRK13342 recombination factor 65.8 4 8.6E-05 44.0 2.3 41 92-133 14-54 (413)
127 cd01373 KISc_KLP2_like Kinesin 64.8 2.7 5.9E-05 44.0 0.8 24 285-308 131-154 (337)
128 TIGR03499 FlhF flagellar biosy 64.6 2.3 5E-05 43.3 0.2 19 116-134 195-213 (282)
129 PF13238 AAA_18: AAA domain; P 64.4 2.8 6E-05 36.3 0.6 15 118-132 1-15 (129)
130 PF03215 Rad17: Rad17 cell cyc 64.4 3.4 7.3E-05 45.8 1.5 30 103-132 31-62 (519)
131 PRK12723 flagellar biosynthesi 64.4 2.7 5.8E-05 44.9 0.6 20 115-134 174-193 (388)
132 COG1223 Predicted ATPase (AAA+ 64.3 2.5 5.3E-05 42.3 0.3 18 115-132 151-168 (368)
133 PHA02544 44 clamp loader, smal 63.9 3.4 7.3E-05 42.5 1.3 23 112-134 39-62 (316)
134 cd01368 KISc_KIF23_like Kinesi 63.4 3.4 7.4E-05 43.4 1.2 22 288-309 130-151 (345)
135 COG1219 ClpX ATP-dependent pro 63.1 3 6.6E-05 42.8 0.7 17 114-130 96-112 (408)
136 PRK10536 hypothetical protein; 63.1 3.8 8.3E-05 41.1 1.4 42 82-133 51-92 (262)
137 PTZ00361 26 proteosome regulat 62.9 5.5 0.00012 43.2 2.7 16 117-132 219-234 (438)
138 PRK11448 hsdR type I restricti 62.9 3.7 7.9E-05 49.8 1.5 29 105-134 424-452 (1123)
139 KOG3859|consensus 62.6 4.6 9.9E-05 40.6 1.8 28 105-132 31-59 (406)
140 cd01365 KISc_KIF1A_KIF1B Kines 62.2 3.9 8.5E-05 43.1 1.4 25 285-309 134-158 (356)
141 cd01370 KISc_KIP3_like Kinesin 62.0 3.6 7.9E-05 43.0 1.1 24 285-308 132-155 (338)
142 PRK11776 ATP-dependent RNA hel 61.8 5.4 0.00012 43.5 2.5 23 107-131 35-57 (460)
143 cd00268 DEADc DEAD-box helicas 61.5 6.1 0.00013 37.5 2.5 23 107-131 30-52 (203)
144 KOG0245|consensus 60.9 3.1 6.7E-05 48.5 0.4 26 283-308 133-158 (1221)
145 COG2256 MGS1 ATPase related to 60.8 5.8 0.00013 42.1 2.3 41 90-131 24-64 (436)
146 PF07728 AAA_5: AAA domain (dy 60.6 3.6 7.8E-05 36.6 0.7 15 118-132 2-16 (139)
147 KOG2543|consensus 60.5 2.9 6.3E-05 44.0 0.0 17 116-132 31-47 (438)
148 KOG1803|consensus 60.3 7.9 0.00017 43.0 3.3 19 116-134 202-220 (649)
149 KOG4280|consensus 60.1 2.2 4.8E-05 47.3 -0.9 26 286-311 132-157 (574)
150 PRK14722 flhF flagellar biosyn 60.1 3.2 6.8E-05 44.1 0.3 20 115-134 137-156 (374)
151 PF06309 Torsin: Torsin; Inte 59.9 2.8 6E-05 37.3 -0.2 15 117-131 55-69 (127)
152 PRK04837 ATP-dependent RNA hel 59.8 4.6 0.0001 43.5 1.5 24 107-132 39-62 (423)
153 PTZ00424 helicase 45; Provisio 59.8 6.1 0.00013 42.0 2.4 25 106-132 58-82 (401)
154 PRK03992 proteasome-activating 59.7 2.1 4.6E-05 45.7 -1.1 18 115-132 165-182 (389)
155 PF00063 Myosin_head: Myosin h 59.6 4.4 9.6E-05 46.7 1.4 36 96-132 66-102 (689)
156 TIGR02881 spore_V_K stage V sp 59.3 3.3 7.1E-05 41.6 0.2 19 115-133 42-60 (261)
157 PF06414 Zeta_toxin: Zeta toxi 59.3 3.3 7.2E-05 39.6 0.3 21 113-133 13-33 (199)
158 KOG0727|consensus 58.9 7.1 0.00015 38.9 2.4 75 84-158 153-249 (408)
159 TIGR00348 hsdR type I site-spe 58.3 5.2 0.00011 46.0 1.6 31 103-134 247-282 (667)
160 PRK11331 5-methylcytosine-spec 58.2 5.6 0.00012 43.1 1.8 27 104-132 185-211 (459)
161 CHL00081 chlI Mg-protoporyphyr 58.0 3.1 6.7E-05 43.8 -0.3 43 82-132 13-55 (350)
162 COG1201 Lhr Lhr-like helicases 57.6 7.1 0.00015 45.4 2.5 58 107-175 31-89 (814)
163 PF00735 Septin: Septin; Inte 57.5 4.5 9.7E-05 41.2 0.8 20 112-131 1-20 (281)
164 KOG2373|consensus 57.4 11 0.00023 39.3 3.5 30 104-134 260-292 (514)
165 cd01123 Rad51_DMC1_radA Rad51_ 57.4 7.4 0.00016 38.0 2.4 30 103-132 4-36 (235)
166 PHA02244 ATPase-like protein 57.4 7.2 0.00016 41.2 2.4 34 97-132 103-136 (383)
167 PF02456 Adeno_IVa2: Adenoviru 57.1 4 8.7E-05 41.7 0.4 17 117-133 89-105 (369)
168 PRK11192 ATP-dependent RNA hel 56.8 7.3 0.00016 42.1 2.4 25 106-132 31-55 (434)
169 PRK13341 recombination factor 56.6 5.7 0.00012 45.9 1.6 40 93-133 31-70 (725)
170 PRK00080 ruvB Holliday junctio 56.5 6.1 0.00013 41.0 1.7 43 90-133 25-69 (328)
171 PF13555 AAA_29: P-loop contai 56.4 4 8.6E-05 31.6 0.2 15 118-132 26-40 (62)
172 KOG0335|consensus 56.2 4.6 9.9E-05 43.8 0.7 23 111-135 109-131 (482)
173 TIGR02237 recomb_radB DNA repa 56.2 6.6 0.00014 37.6 1.8 25 108-132 2-29 (209)
174 PF12775 AAA_7: P-loop contain 56.0 5.7 0.00012 40.2 1.3 27 106-133 25-51 (272)
175 TIGR01618 phage_P_loop phage n 55.9 4 8.7E-05 40.0 0.2 20 115-134 12-31 (220)
176 cd01375 KISc_KIF9_like Kinesin 55.7 5.8 0.00013 41.4 1.4 25 285-309 127-151 (334)
177 PLN03025 replication factor C 55.6 5.8 0.00013 41.1 1.3 23 112-134 31-53 (319)
178 PF06745 KaiC: KaiC; InterPro 55.3 7.9 0.00017 37.7 2.2 27 104-130 5-34 (226)
179 TIGR02788 VirB11 P-type DNA tr 55.2 5.9 0.00013 40.9 1.3 30 103-133 133-162 (308)
180 PRK04328 hypothetical protein; 55.2 8.6 0.00019 38.3 2.4 28 103-130 8-38 (249)
181 PF06048 DUF927: Domain of unk 54.4 6.7 0.00014 40.0 1.5 32 101-133 180-211 (286)
182 PRK10416 signal recognition pa 54.3 7.2 0.00016 40.5 1.7 20 115-134 114-133 (318)
183 KOG0240|consensus 54.3 4.5 9.8E-05 44.3 0.3 29 283-311 128-156 (607)
184 PF00225 Kinesin: Kinesin moto 54.1 5.9 0.00013 41.2 1.1 24 286-309 124-147 (335)
185 COG1419 FlhF Flagellar GTP-bin 54.1 6.7 0.00015 41.7 1.5 38 96-133 180-221 (407)
186 COG1125 OpuBA ABC-type proline 54.1 4.5 9.8E-05 40.4 0.2 14 119-132 31-44 (309)
187 KOG0953|consensus 53.9 5.7 0.00012 43.6 0.9 40 117-156 193-238 (700)
188 TIGR00376 DNA helicase, putati 53.7 7.1 0.00015 44.6 1.7 27 107-134 166-192 (637)
189 PRK10590 ATP-dependent RNA hel 53.5 9.2 0.0002 41.7 2.5 24 107-132 32-55 (456)
190 cd01364 KISc_BimC_Eg5 Kinesin 53.3 6.2 0.00013 41.5 1.1 24 286-309 136-159 (352)
191 PF02534 T4SS-DNA_transf: Type 52.9 11 0.00024 41.1 3.0 17 116-132 45-61 (469)
192 PRK04195 replication factor C 52.4 6.9 0.00015 43.1 1.3 30 103-132 26-56 (482)
193 PRK00440 rfc replication facto 52.4 7 0.00015 40.0 1.3 21 112-132 35-55 (319)
194 TIGR03819 heli_sec_ATPase heli 52.0 6.6 0.00014 41.2 1.0 30 103-133 167-196 (340)
195 cd01120 RecA-like_NTPases RecA 51.8 4.7 0.0001 36.2 -0.1 17 118-134 2-18 (165)
196 COG1222 RPT1 ATP-dependent 26S 51.8 6.6 0.00014 41.1 0.9 75 84-158 149-245 (406)
197 cd01376 KISc_KID_like Kinesin 51.7 6.9 0.00015 40.6 1.1 23 286-308 124-146 (319)
198 PF05729 NACHT: NACHT domain 51.6 5.5 0.00012 36.0 0.3 17 117-133 2-18 (166)
199 PLN03188 kinesin-12 family pro 51.4 6.9 0.00015 46.9 1.1 25 285-309 225-249 (1320)
200 TIGR02640 gas_vesic_GvpN gas v 51.3 11 0.00023 37.9 2.4 27 104-132 12-38 (262)
201 cd01126 TraG_VirD4 The TraG/Tr 51.2 8.1 0.00017 41.1 1.6 16 118-133 2-17 (384)
202 PRK07261 topology modulation p 50.9 6.3 0.00014 36.8 0.6 15 118-132 3-17 (171)
203 PRK00131 aroK shikimate kinase 50.8 6.9 0.00015 35.9 0.9 16 116-131 5-20 (175)
204 PRK10917 ATP-dependent DNA hel 50.7 9.5 0.00021 43.9 2.2 22 112-133 279-300 (681)
205 TIGR01359 UMP_CMP_kin_fam UMP- 50.5 6.5 0.00014 36.7 0.6 14 118-131 2-15 (183)
206 PRK06067 flagellar accessory p 50.4 10 0.00022 37.2 2.0 31 102-132 9-42 (234)
207 PF13173 AAA_14: AAA domain 50.3 5.7 0.00012 35.0 0.2 17 116-132 3-19 (128)
208 cd01369 KISc_KHC_KIF5 Kinesin 50.3 8.2 0.00018 40.1 1.4 26 284-309 123-148 (325)
209 PRK09361 radB DNA repair and r 50.1 13 0.00029 36.1 2.8 32 102-133 7-41 (225)
210 cd02021 GntK Gluconate kinase 50.0 6.6 0.00014 35.4 0.6 14 118-131 2-15 (150)
211 cd01374 KISc_CENP_E Kinesin mo 50.0 7.3 0.00016 40.4 1.0 24 286-309 118-141 (321)
212 PF13476 AAA_23: AAA domain; P 49.8 6.4 0.00014 36.9 0.5 18 115-132 19-36 (202)
213 PHA02653 RNA helicase NPH-II; 49.1 13 0.00027 42.8 2.7 24 106-131 172-195 (675)
214 PRK08118 topology modulation p 49.0 7.1 0.00015 36.4 0.7 13 118-130 4-16 (167)
215 smart00242 MYSc Myosin. Large 48.8 9.5 0.00021 43.9 1.8 36 96-132 73-109 (677)
216 PRK05703 flhF flagellar biosyn 48.8 6.3 0.00014 42.6 0.3 19 116-134 222-240 (424)
217 TIGR00614 recQ_fam ATP-depende 48.8 13 0.00028 40.8 2.7 25 106-132 19-43 (470)
218 cd01366 KISc_C_terminal Kinesi 48.7 8.7 0.00019 39.9 1.3 25 285-309 123-147 (329)
219 PF10236 DAP3: Mitochondrial r 48.6 8.3 0.00018 39.8 1.1 24 111-134 19-42 (309)
220 cd01127 TrwB Bacterial conjuga 48.6 6.9 0.00015 42.1 0.6 18 115-132 42-59 (410)
221 PRK11634 ATP-dependent RNA hel 48.4 12 0.00026 42.7 2.5 25 106-132 36-60 (629)
222 COG2607 Predicted ATPase (AAA+ 48.3 17 0.00038 36.0 3.2 41 86-131 60-101 (287)
223 cd01850 CDC_Septin CDC/Septin. 47.9 7.4 0.00016 39.5 0.7 21 112-132 1-21 (276)
224 COG4096 HsdR Type I site-speci 47.6 17 0.00036 42.0 3.4 31 103-134 174-204 (875)
225 KOG0729|consensus 47.4 9.5 0.00021 38.3 1.3 45 112-156 206-269 (435)
226 cd01367 KISc_KIF2_like Kinesin 47.4 9 0.00019 39.8 1.2 23 286-308 128-150 (322)
227 cd01371 KISc_KIF3 Kinesin moto 47.3 8.9 0.00019 40.0 1.1 23 286-308 129-151 (333)
228 cd01372 KISc_KIF4 Kinesin moto 47.2 9.5 0.0002 39.9 1.3 25 285-309 124-148 (341)
229 TIGR03158 cas3_cyano CRISPR-as 46.9 14 0.00031 38.9 2.6 26 107-132 6-31 (357)
230 KOG0739|consensus 46.9 9.3 0.0002 39.0 1.1 74 84-157 131-225 (439)
231 cd00820 PEPCK_HprK Phosphoenol 46.7 7.4 0.00016 33.6 0.3 17 116-132 16-32 (107)
232 PRK09270 nucleoside triphospha 46.6 12 0.00025 36.8 1.8 36 97-132 14-50 (229)
233 TIGR03877 thermo_KaiC_1 KaiC d 46.6 15 0.00033 36.1 2.7 28 103-130 6-36 (237)
234 PRK06696 uridine kinase; Valid 46.5 14 0.0003 36.1 2.3 30 103-132 7-39 (223)
235 COG5019 CDC3 Septin family pro 46.4 12 0.00026 39.2 1.9 20 112-131 20-39 (373)
236 PHA02624 large T antigen; Prov 46.3 12 0.00026 42.1 1.9 30 105-134 419-450 (647)
237 TIGR01313 therm_gnt_kin carboh 46.3 6.9 0.00015 35.9 0.1 14 118-131 1-14 (163)
238 cd01384 MYSc_type_XI Myosin mo 46.1 12 0.00025 43.1 1.9 35 97-132 70-105 (674)
239 PRK00771 signal recognition pa 45.9 15 0.00031 40.0 2.5 21 114-134 94-114 (437)
240 PLN00206 DEAD-box ATP-dependen 45.8 16 0.00035 40.6 2.9 25 106-132 151-175 (518)
241 cd01381 MYSc_type_VII Myosin m 45.7 14 0.00031 42.4 2.5 36 96-132 67-103 (671)
242 cd01383 MYSc_type_VIII Myosin 45.7 14 0.0003 42.5 2.5 36 96-132 73-109 (677)
243 KOG0652|consensus 45.6 9.7 0.00021 38.1 1.0 14 117-130 207-220 (424)
244 cd00464 SK Shikimate kinase (S 45.5 7.9 0.00017 34.8 0.4 15 117-131 1-15 (154)
245 PRK06995 flhF flagellar biosyn 45.5 7.3 0.00016 42.8 0.2 19 116-134 257-275 (484)
246 PRK14974 cell division protein 45.5 14 0.00029 38.8 2.1 20 115-134 140-159 (336)
247 PHA01747 putative ATP-dependen 45.4 8.8 0.00019 40.4 0.7 31 102-132 177-207 (425)
248 cd01428 ADK Adenylate kinase ( 45.3 8.7 0.00019 36.1 0.6 14 118-131 2-15 (194)
249 KOG0340|consensus 45.2 16 0.00035 38.1 2.5 29 105-135 36-64 (442)
250 TIGR02322 phosphon_PhnN phosph 45.1 7.6 0.00017 36.2 0.2 16 117-132 3-18 (179)
251 CHL00181 cbbX CbbX; Provisiona 45.1 8.6 0.00019 39.3 0.6 15 118-132 62-76 (287)
252 KOG1547|consensus 45.1 18 0.00039 35.8 2.7 20 112-131 43-62 (336)
253 cd01387 MYSc_type_XV Myosin mo 44.8 14 0.00031 42.4 2.4 36 96-132 68-104 (677)
254 COG1126 GlnQ ABC-type polar am 44.8 7.6 0.00016 37.9 0.1 15 118-132 31-45 (240)
255 PRK01297 ATP-dependent RNA hel 44.5 14 0.0003 40.6 2.1 26 105-132 116-141 (475)
256 PRK11057 ATP-dependent DNA hel 44.3 15 0.00033 41.7 2.5 25 106-132 33-57 (607)
257 PRK04537 ATP-dependent RNA hel 44.1 15 0.00034 41.3 2.5 24 107-132 40-63 (572)
258 cd01393 recA_like RecA is a b 44.0 18 0.0004 34.9 2.7 32 102-133 3-37 (226)
259 TIGR02903 spore_lon_C ATP-depe 43.8 13 0.00028 42.3 1.8 42 83-132 151-192 (615)
260 cd01394 radB RadB. The archaea 43.7 20 0.00043 34.6 2.9 31 103-133 4-37 (218)
261 TIGR00643 recG ATP-dependent D 43.7 14 0.0003 42.2 2.0 19 114-132 255-273 (630)
262 cd01378 MYSc_type_I Myosin mot 43.6 15 0.00033 42.2 2.3 36 96-132 67-103 (674)
263 KOG0354|consensus 43.5 17 0.00037 41.7 2.7 43 86-131 44-92 (746)
264 cd00124 MYSc Myosin motor doma 43.3 14 0.0003 42.6 1.9 36 96-132 67-103 (679)
265 cd01385 MYSc_type_IX Myosin mo 43.2 14 0.00031 42.5 2.0 36 96-132 75-111 (692)
266 smart00489 DEXDc3 DEAD-like he 43.1 10 0.00023 38.7 0.9 38 91-134 9-46 (289)
267 smart00488 DEXDc2 DEAD-like he 43.1 10 0.00023 38.7 0.9 38 91-134 9-46 (289)
268 PF10412 TrwB_AAD_bind: Type I 42.9 9.4 0.0002 40.8 0.5 19 116-134 16-34 (386)
269 PRK06217 hypothetical protein; 42.9 9.9 0.00022 35.8 0.6 14 118-131 4-17 (183)
270 PRK10865 protein disaggregatio 42.9 14 0.0003 43.8 1.9 17 116-132 599-615 (857)
271 cd01382 MYSc_type_VI Myosin mo 42.6 13 0.00028 43.1 1.6 35 97-132 73-108 (717)
272 PRK14531 adenylate kinase; Pro 42.5 10 0.00022 35.7 0.7 15 117-131 4-18 (183)
273 PRK05580 primosome assembly pr 42.4 15 0.00032 42.4 2.0 18 116-133 163-180 (679)
274 PRK01172 ski2-like helicase; P 42.3 16 0.00035 42.0 2.4 21 109-131 33-53 (674)
275 TIGR03744 traC_PFL_4706 conjug 42.2 8.3 0.00018 45.9 -0.0 22 113-134 473-494 (893)
276 TIGR01650 PD_CobS cobaltochela 42.1 18 0.00039 37.6 2.4 40 91-132 41-81 (327)
277 PRK11889 flhF flagellar biosyn 42.1 8.9 0.00019 41.0 0.2 19 116-134 242-260 (436)
278 cd01124 KaiC KaiC is a circadi 42.1 12 0.00026 34.8 1.1 15 118-132 2-16 (187)
279 PRK12726 flagellar biosynthesi 42.0 9.1 0.0002 40.7 0.2 20 115-134 206-225 (407)
280 cd01377 MYSc_type_II Myosin mo 42.0 15 0.00031 42.5 1.9 36 96-132 72-108 (693)
281 COG0630 VirB11 Type IV secreto 41.9 8.3 0.00018 39.9 -0.1 22 113-134 141-162 (312)
282 TIGR02746 TraC-F-type type-IV 41.8 8.4 0.00018 45.2 -0.1 21 114-134 429-449 (797)
283 TIGR00602 rad24 checkpoint pro 41.5 10 0.00022 43.1 0.5 41 93-134 87-129 (637)
284 TIGR01241 FtsH_fam ATP-depende 41.3 11 0.00023 41.8 0.6 51 82-133 51-106 (495)
285 TIGR02880 cbbX_cfxQ probable R 41.3 11 0.00023 38.5 0.6 16 117-132 60-75 (284)
286 COG3829 RocR Transcriptional r 41.2 14 0.0003 40.8 1.4 44 79-128 238-281 (560)
287 TIGR00064 ftsY signal recognit 40.9 11 0.00025 38.1 0.7 20 115-134 72-91 (272)
288 PF00931 NB-ARC: NB-ARC domain 40.8 22 0.00048 35.6 2.8 30 103-132 5-36 (287)
289 TIGR02236 recomb_radA DNA repa 40.6 21 0.00046 36.7 2.7 32 102-133 79-113 (310)
290 PRK08233 hypothetical protein; 40.6 11 0.00025 34.8 0.6 16 117-132 5-20 (182)
291 COG1136 SalX ABC-type antimicr 40.6 9.1 0.0002 37.6 -0.0 15 118-132 34-48 (226)
292 COG0467 RAD55 RecA-superfamily 40.4 19 0.00041 36.0 2.2 24 107-130 12-38 (260)
293 TIGR02767 TraG-Ti Ti-type conj 40.2 15 0.00031 41.9 1.5 17 116-132 212-228 (623)
294 PRK14729 miaA tRNA delta(2)-is 40.1 14 0.00031 38.0 1.3 15 117-131 6-20 (300)
295 cd01380 MYSc_type_V Myosin mot 40.0 17 0.00036 42.0 2.0 35 97-132 68-103 (691)
296 CHL00195 ycf46 Ycf46; Provisio 40.0 11 0.00023 41.7 0.3 17 116-132 260-276 (489)
297 PRK14721 flhF flagellar biosyn 39.9 10 0.00023 40.8 0.3 19 115-133 191-209 (420)
298 PRK06762 hypothetical protein; 39.9 13 0.00028 34.2 0.9 14 117-130 4-17 (166)
299 PF00485 PRK: Phosphoribulokin 39.8 12 0.00026 35.6 0.6 14 118-131 2-15 (194)
300 TIGR01389 recQ ATP-dependent D 39.7 21 0.00045 40.4 2.7 25 106-132 21-45 (591)
301 PRK14532 adenylate kinase; Pro 39.7 13 0.00028 34.9 0.9 15 117-131 2-16 (188)
302 PF08477 Miro: Miro-like prote 39.6 15 0.00032 31.3 1.1 15 118-132 2-16 (119)
303 TIGR03689 pup_AAA proteasome A 39.5 10 0.00022 42.0 0.1 16 117-132 218-233 (512)
304 TIGR03238 dnd_assoc_3 dnd syst 39.4 14 0.00031 40.4 1.2 28 107-134 18-51 (504)
305 PRK14723 flhF flagellar biosyn 39.3 11 0.00025 43.5 0.5 18 116-133 186-203 (767)
306 cd02023 UMPK Uridine monophosp 39.2 9.9 0.00021 36.1 -0.0 15 118-132 2-16 (198)
307 PRK04040 adenylate kinase; Pro 39.1 12 0.00027 35.5 0.7 16 117-132 4-19 (188)
308 PRK11034 clpA ATP-dependent Cl 38.8 18 0.0004 42.1 2.1 18 115-132 488-505 (758)
309 KOG2391|consensus 38.8 98 0.0021 32.1 6.9 56 505-560 226-292 (365)
310 TIGR01360 aden_kin_iso1 adenyl 38.6 14 0.0003 34.4 0.9 16 117-132 5-20 (188)
311 smart00763 AAA_PrkA PrkA AAA d 38.4 27 0.00058 36.9 3.0 46 81-131 44-94 (361)
312 KOG2228|consensus 38.4 23 0.00051 36.9 2.5 41 89-133 27-67 (408)
313 cd02020 CMPK Cytidine monophos 38.4 15 0.00033 32.5 1.1 14 118-131 2-15 (147)
314 PRK14962 DNA polymerase III su 38.1 19 0.00042 39.5 2.0 41 84-132 12-53 (472)
315 PRK05342 clpX ATP-dependent pr 38.0 14 0.0003 39.9 0.8 18 115-132 108-125 (412)
316 KOG0726|consensus 37.8 23 0.00049 36.2 2.2 42 117-158 221-279 (440)
317 TIGR03881 KaiC_arch_4 KaiC dom 37.7 23 0.0005 34.4 2.3 31 103-133 5-38 (229)
318 PRK14961 DNA polymerase III su 37.6 17 0.00038 38.3 1.5 41 84-132 14-55 (363)
319 cd02025 PanK Pantothenate kina 37.6 8.1 0.00018 37.8 -0.9 13 120-132 4-16 (220)
320 TIGR02173 cyt_kin_arch cytidyl 37.3 14 0.0003 33.9 0.6 16 117-132 2-17 (171)
321 PRK12724 flagellar biosynthesi 37.1 12 0.00026 40.3 0.2 19 115-133 223-241 (432)
322 TIGR02238 recomb_DMC1 meiotic 37.0 29 0.00062 36.0 3.0 31 102-132 80-113 (313)
323 cd00983 recA RecA is a bacter 37.0 27 0.00059 36.4 2.8 32 101-132 37-72 (325)
324 PF01745 IPT: Isopentenyl tran 36.5 18 0.0004 35.3 1.3 16 117-132 3-18 (233)
325 PRK06851 hypothetical protein; 36.5 16 0.00035 38.6 1.1 28 106-133 21-48 (367)
326 cd01379 MYSc_type_III Myosin m 36.5 19 0.00041 41.2 1.7 35 97-132 68-103 (653)
327 PRK03839 putative kinase; Prov 36.4 14 0.00031 34.4 0.6 14 118-131 3-16 (180)
328 KOG1514|consensus 36.4 20 0.00042 40.8 1.7 32 103-134 408-441 (767)
329 PRK04296 thymidine kinase; Pro 36.4 15 0.00033 34.9 0.8 18 117-134 4-21 (190)
330 PF07693 KAP_NTPase: KAP famil 36.4 19 0.00042 36.9 1.6 20 113-132 18-37 (325)
331 TIGR02030 BchI-ChlI magnesium 36.2 13 0.00027 39.0 0.2 31 103-133 13-43 (337)
332 COG0606 Predicted ATPase with 36.0 20 0.00043 39.0 1.6 35 105-143 189-223 (490)
333 PRK13850 type IV secretion sys 35.9 26 0.00055 40.3 2.6 21 112-132 136-156 (670)
334 PRK04301 radA DNA repair and r 35.8 29 0.00062 35.9 2.8 32 102-133 86-120 (317)
335 PRK15483 type III restriction- 35.7 18 0.00039 43.0 1.4 14 121-134 65-78 (986)
336 KOG1532|consensus 35.7 27 0.00058 35.4 2.3 37 114-164 18-54 (366)
337 smart00129 KISc Kinesin motor, 35.7 16 0.00036 37.9 1.0 24 285-308 124-147 (335)
338 PF04548 AIG1: AIG1 family; I 35.7 14 0.00031 35.7 0.4 15 117-131 2-16 (212)
339 PF14532 Sigma54_activ_2: Sigm 35.6 15 0.00033 32.7 0.7 20 112-131 18-37 (138)
340 TIGR00231 small_GTP small GTP- 35.5 12 0.00027 32.7 -0.0 16 117-132 3-18 (161)
341 KOG0651|consensus 35.4 11 0.00023 38.9 -0.5 80 79-158 125-226 (388)
342 cd00106 KISc Kinesin motor dom 35.4 18 0.0004 37.4 1.2 25 285-309 124-148 (328)
343 TIGR02639 ClpA ATP-dependent C 35.4 22 0.00049 41.3 2.1 37 94-131 458-500 (731)
344 PRK13822 conjugal transfer cou 35.4 19 0.00041 41.1 1.4 18 115-132 224-241 (641)
345 PRK10078 ribose 1,5-bisphospho 35.3 13 0.00029 35.0 0.2 16 117-132 4-19 (186)
346 TIGR03263 guanyl_kin guanylate 35.2 20 0.00042 33.3 1.3 15 117-131 3-17 (180)
347 cd00071 GMPK Guanosine monopho 35.2 18 0.0004 32.3 1.1 13 118-130 2-14 (137)
348 TIGR02012 tigrfam_recA protein 35.2 30 0.00065 36.0 2.8 31 102-132 38-72 (321)
349 PRK09354 recA recombinase A; P 35.2 30 0.00066 36.4 2.8 32 101-132 42-77 (349)
350 TIGR01817 nifA Nif-specific re 35.1 15 0.00032 41.0 0.5 44 82-131 192-235 (534)
351 cd02027 APSK Adenosine 5'-phos 35.1 14 0.00031 33.5 0.3 14 118-131 2-15 (149)
352 KOG0742|consensus 35.1 18 0.00039 38.6 1.1 13 117-129 386-398 (630)
353 TIGR00382 clpX endopeptidase C 35.1 16 0.00035 39.3 0.8 17 116-132 117-133 (413)
354 PF02367 UPF0079: Uncharacteri 35.0 25 0.00054 31.1 1.9 19 116-134 16-34 (123)
355 TIGR00929 VirB4_CagE type IV s 35.0 13 0.00029 43.4 0.1 20 115-134 434-453 (785)
356 PF00025 Arf: ADP-ribosylation 34.9 29 0.00062 32.3 2.4 27 105-131 3-30 (175)
357 TIGR01351 adk adenylate kinase 34.9 16 0.00034 35.2 0.7 14 118-131 2-15 (210)
358 cd01983 Fer4_NifH The Fer4_Nif 34.9 14 0.0003 29.7 0.2 17 118-134 2-18 (99)
359 KOG0745|consensus 34.8 17 0.00036 39.1 0.8 16 115-130 226-241 (564)
360 PRK14530 adenylate kinase; Pro 34.8 16 0.00034 35.4 0.6 15 117-131 5-19 (215)
361 TIGR03880 KaiC_arch_3 KaiC dom 34.8 29 0.00062 33.7 2.5 27 106-132 4-33 (224)
362 PLN03187 meiotic recombination 34.8 30 0.00065 36.3 2.7 31 101-131 109-142 (344)
363 TIGR02902 spore_lonB ATP-depen 34.7 23 0.0005 39.6 1.9 41 83-131 62-102 (531)
364 cd01386 MYSc_type_XVIII Myosin 34.7 20 0.00044 41.8 1.6 35 97-132 68-103 (767)
365 TIGR02655 circ_KaiC circadian 34.5 26 0.00056 38.6 2.3 28 103-130 6-36 (484)
366 PRK10689 transcription-repair 34.5 22 0.00048 43.5 1.9 38 90-131 600-637 (1147)
367 PRK13897 type IV secretion sys 34.4 27 0.00059 39.6 2.5 24 116-147 159-182 (606)
368 CHL00176 ftsH cell division pr 34.1 21 0.00046 40.8 1.5 17 116-132 217-233 (638)
369 PRK14964 DNA polymerase III su 34.0 17 0.00036 40.1 0.7 23 110-132 29-52 (491)
370 COG3842 PotA ABC-type spermidi 33.9 14 0.00029 38.9 -0.0 14 119-132 35-48 (352)
371 COG0324 MiaA tRNA delta(2)-iso 33.8 21 0.00045 36.8 1.3 16 117-132 5-20 (308)
372 PTZ00110 helicase; Provisional 33.7 29 0.00062 38.9 2.5 24 107-132 161-184 (545)
373 TIGR00580 mfd transcription-re 33.5 21 0.00047 42.5 1.5 27 106-132 463-489 (926)
374 PRK13767 ATP-dependent helicas 33.4 26 0.00057 41.6 2.3 23 108-132 42-64 (876)
375 PRK14527 adenylate kinase; Pro 33.4 22 0.00047 33.6 1.3 17 116-132 7-23 (191)
376 PRK00300 gmk guanylate kinase; 33.3 22 0.00047 33.8 1.3 17 115-131 5-21 (205)
377 cd03274 ABC_SMC4_euk Eukaryoti 33.2 15 0.00033 35.6 0.2 16 117-132 27-42 (212)
378 PRK11664 ATP-dependent RNA hel 33.1 29 0.00063 40.9 2.5 33 98-133 6-38 (812)
379 TIGR00235 udk uridine kinase. 33.1 19 0.00041 34.6 0.9 16 116-131 7-22 (207)
380 PRK15429 formate hydrogenlyase 33.1 16 0.00035 42.2 0.4 43 83-131 373-415 (686)
381 KOG0241|consensus 33.0 12 0.00025 43.6 -0.7 27 283-309 137-163 (1714)
382 KOG0741|consensus 33.0 22 0.00047 39.2 1.3 14 117-130 258-271 (744)
383 PRK10867 signal recognition pa 33.0 20 0.00042 39.0 1.0 20 115-134 100-119 (433)
384 cd02019 NK Nucleoside/nucleoti 33.0 22 0.00048 27.6 1.1 14 118-131 2-15 (69)
385 COG0563 Adk Adenylate kinase a 32.9 18 0.0004 34.1 0.7 14 118-131 3-16 (178)
386 PRK13889 conjugal transfer rel 32.8 23 0.0005 42.5 1.6 27 106-133 354-380 (988)
387 PRK05986 cob(I)alamin adenolsy 32.7 18 0.00039 34.6 0.6 20 115-134 22-41 (191)
388 PHA02774 E1; Provisional 32.6 27 0.00058 39.2 2.0 29 106-134 423-453 (613)
389 KOG0735|consensus 32.5 18 0.0004 41.1 0.7 19 114-132 700-718 (952)
390 PF01078 Mg_chelatase: Magnesi 32.5 28 0.00061 33.7 1.9 24 107-131 15-38 (206)
391 TIGR03345 VI_ClpV1 type VI sec 32.5 28 0.00061 41.2 2.3 17 116-132 597-613 (852)
392 TIGR02768 TraA_Ti Ti-type conj 32.4 22 0.00048 41.4 1.4 28 106-134 360-387 (744)
393 PF00158 Sigma54_activat: Sigm 32.3 24 0.00052 32.9 1.4 19 112-130 19-37 (168)
394 TIGR02688 conserved hypothetic 32.3 17 0.00038 39.1 0.5 24 109-134 205-228 (449)
395 PF09439 SRPRB: Signal recogni 32.2 24 0.00051 33.5 1.3 16 116-131 4-19 (181)
396 TIGR00959 ffh signal recogniti 32.0 20 0.00044 38.8 1.0 20 115-134 99-118 (428)
397 TIGR01425 SRP54_euk signal rec 31.9 19 0.00042 38.9 0.8 21 114-134 99-119 (429)
398 TIGR00390 hslU ATP-dependent p 31.9 19 0.00041 38.8 0.7 17 116-132 48-64 (441)
399 PRK12727 flagellar biosynthesi 31.9 16 0.00036 40.5 0.2 19 116-134 351-369 (559)
400 TIGR02397 dnaX_nterm DNA polym 31.8 24 0.00052 36.7 1.5 36 93-132 17-53 (355)
401 PRK13531 regulatory ATPase Rav 31.8 24 0.00052 38.8 1.4 28 103-132 29-56 (498)
402 cd03240 ABC_Rad50 The catalyti 31.6 17 0.00036 35.0 0.2 17 117-133 24-40 (204)
403 COG3839 MalK ABC-type sugar tr 31.6 17 0.00036 38.0 0.2 15 118-132 32-46 (338)
404 PRK06305 DNA polymerase III su 31.6 21 0.00045 39.0 0.9 42 84-133 15-57 (451)
405 PRK00091 miaA tRNA delta(2)-is 31.5 24 0.00051 36.5 1.3 15 117-131 6-20 (307)
406 PHA02530 pseT polynucleotide k 31.3 21 0.00045 36.3 0.9 15 117-131 4-18 (300)
407 PRK09302 circadian clock prote 31.1 34 0.00073 37.9 2.5 30 102-131 15-47 (509)
408 PLN02200 adenylate kinase fami 31.0 22 0.00047 35.2 0.9 16 116-131 44-59 (234)
409 PRK10820 DNA-binding transcrip 31.0 19 0.0004 40.2 0.5 45 81-131 199-243 (520)
410 COG1122 CbiO ABC-type cobalt t 31.0 25 0.00054 34.8 1.3 17 116-132 31-47 (235)
411 PRK14970 DNA polymerase III su 30.9 26 0.00056 36.9 1.5 27 106-132 29-56 (367)
412 PTZ00035 Rad51 protein; Provis 30.8 42 0.0009 35.2 3.0 32 101-132 101-135 (337)
413 TIGR01447 recD exodeoxyribonuc 30.7 23 0.0005 40.0 1.2 27 106-134 153-179 (586)
414 cd03115 SRP The signal recogni 30.7 18 0.00039 33.5 0.2 16 118-133 3-18 (173)
415 PRK15424 propionate catabolism 30.7 20 0.00042 40.1 0.6 43 82-130 215-257 (538)
416 cd03279 ABC_sbcCD SbcCD and ot 30.7 18 0.00039 34.9 0.3 18 115-132 28-45 (213)
417 KOG0744|consensus 30.6 29 0.00063 36.0 1.7 21 114-134 176-196 (423)
418 PRK14963 DNA polymerase III su 30.5 23 0.0005 39.2 1.1 17 116-132 37-53 (504)
419 TIGR01587 cas3_core CRISPR-ass 30.5 23 0.00051 36.9 1.1 15 118-132 2-16 (358)
420 PF03670 UPF0184: Uncharacteri 30.4 35 0.00075 28.0 1.8 41 404-447 21-61 (83)
421 PRK13721 conjugal transfer ATP 30.4 17 0.00037 43.1 0.0 21 114-134 448-468 (844)
422 cd02028 UMPK_like Uridine mono 30.3 21 0.00045 33.6 0.6 15 118-132 2-16 (179)
423 TIGR00174 miaA tRNA isopenteny 30.3 24 0.00052 36.1 1.1 14 118-131 2-15 (287)
424 TIGR01074 rep ATP-dependent DN 30.2 19 0.00042 41.2 0.4 20 115-134 14-33 (664)
425 KOG0924|consensus 30.1 26 0.00057 39.6 1.4 34 96-132 355-388 (1042)
426 TIGR03878 thermo_KaiC_2 KaiC d 30.0 38 0.00083 33.9 2.5 17 114-130 35-51 (259)
427 PRK00279 adk adenylate kinase; 30.0 25 0.00054 34.0 1.1 15 117-131 2-16 (215)
428 PRK13873 conjugal transfer ATP 29.9 19 0.00042 42.3 0.4 20 115-134 441-460 (811)
429 PRK13853 type IV secretion sys 29.9 16 0.00035 42.9 -0.3 19 115-133 426-444 (789)
430 KOG0344|consensus 29.8 30 0.00066 38.3 1.8 25 106-132 166-190 (593)
431 PF12774 AAA_6: Hydrolytic ATP 29.8 17 0.00038 35.8 -0.0 40 117-156 34-84 (231)
432 cd00227 CPT Chloramphenicol (C 29.7 27 0.00059 32.4 1.3 15 117-131 4-18 (175)
433 PRK14528 adenylate kinase; Pro 29.7 22 0.00048 33.6 0.7 15 117-131 3-17 (186)
434 TIGR01243 CDC48 AAA family ATP 29.6 23 0.0005 41.2 0.9 40 116-155 213-269 (733)
435 PRK13891 conjugal transfer pro 29.6 18 0.0004 42.8 0.1 19 115-133 488-506 (852)
436 TIGR01613 primase_Cterm phage/ 29.6 13 0.00028 38.2 -1.1 27 106-132 64-93 (304)
437 KOG0328|consensus 29.5 46 0.00099 33.8 2.8 26 106-133 57-82 (400)
438 PF01926 MMR_HSR1: 50S ribosom 29.4 27 0.00058 29.7 1.1 15 118-132 2-16 (116)
439 PRK05416 glmZ(sRNA)-inactivati 29.3 19 0.00041 36.8 0.2 17 117-133 8-24 (288)
440 PTZ00014 myosin-A; Provisional 29.3 32 0.0007 40.4 2.0 21 112-132 180-200 (821)
441 PRK13880 conjugal transfer cou 29.2 32 0.00069 39.3 1.9 19 115-133 175-193 (636)
442 KOG2655|consensus 29.2 31 0.00067 36.4 1.7 23 109-131 15-37 (366)
443 PRK09401 reverse gyrase; Revie 29.2 37 0.0008 41.7 2.6 23 106-130 88-110 (1176)
444 TIGR02329 propionate_PrpR prop 29.1 21 0.00045 39.9 0.4 44 82-131 208-251 (526)
445 TIGR03743 SXT_TraD conjugative 29.0 23 0.00049 40.5 0.7 19 114-132 175-193 (634)
446 PF12444 Sox_N: Sox developmen 29.0 39 0.00086 27.8 1.9 27 94-120 53-79 (84)
447 PRK13876 conjugal transfer cou 28.9 36 0.00079 39.0 2.3 19 114-132 143-161 (663)
448 cd00544 CobU Adenosylcobinamid 28.6 27 0.00059 32.6 1.1 14 118-131 2-15 (169)
449 PLN02165 adenylate isopentenyl 28.5 28 0.00061 36.3 1.2 16 117-132 45-60 (334)
450 PRK05480 uridine/cytidine kina 28.5 30 0.00065 33.1 1.4 19 114-132 5-23 (209)
451 PRK01184 hypothetical protein; 28.4 25 0.00055 32.8 0.8 15 117-131 3-17 (184)
452 TIGR03574 selen_PSTK L-seryl-t 28.4 23 0.0005 35.1 0.6 14 118-131 2-15 (249)
453 TIGR02759 TraD_Ftype type IV c 28.3 19 0.00041 40.5 -0.0 14 117-130 178-191 (566)
454 COG0552 FtsY Signal recognitio 28.3 30 0.00066 35.9 1.4 20 113-132 137-156 (340)
455 TIGR00708 cobA cob(I)alamin ad 28.3 24 0.00053 33.2 0.7 20 115-134 5-24 (173)
456 cd00561 CobA_CobO_BtuR ATP:cor 28.3 25 0.00054 32.6 0.7 19 116-134 3-21 (159)
457 TIGR00176 mobB molybdopterin-g 28.2 19 0.00042 33.1 -0.0 17 118-134 2-18 (155)
458 PRK05541 adenylylsulfate kinas 28.2 26 0.00056 32.5 0.9 16 116-131 8-23 (176)
459 PF10923 DUF2791: P-loop Domai 28.1 32 0.0007 37.0 1.6 29 104-132 38-66 (416)
460 KOG1655|consensus 28.0 2.9E+02 0.0062 26.5 7.5 72 462-534 24-100 (218)
461 PRK11545 gntK gluconate kinase 28.0 14 0.00031 34.1 -1.0 13 121-133 1-13 (163)
462 PRK06645 DNA polymerase III su 28.0 29 0.00063 38.4 1.3 36 93-132 24-60 (507)
463 KOG0736|consensus 27.9 28 0.00062 40.0 1.2 34 96-129 682-719 (953)
464 KOG0987|consensus 27.9 39 0.00084 37.9 2.3 36 92-132 119-154 (540)
465 PRK02496 adk adenylate kinase; 27.9 28 0.00062 32.5 1.1 14 118-131 4-17 (184)
466 PRK05800 cobU adenosylcobinami 27.7 28 0.00061 32.5 1.0 15 117-131 3-17 (170)
467 TIGR01970 DEAH_box_HrpB ATP-de 27.6 36 0.00077 40.1 2.0 25 107-132 10-34 (819)
468 COG1198 PriA Primosomal protei 27.6 32 0.00069 39.8 1.5 55 92-152 200-268 (730)
469 PRK05057 aroK shikimate kinase 27.6 31 0.00068 32.1 1.3 17 116-132 5-21 (172)
470 TIGR03117 cas_csf4 CRISPR-asso 27.3 28 0.00061 39.7 1.1 32 95-132 2-33 (636)
471 TIGR02858 spore_III_AA stage I 27.3 36 0.00078 34.5 1.7 30 103-132 98-128 (270)
472 TIGR01243 CDC48 AAA family ATP 27.3 26 0.00057 40.8 0.8 17 116-132 488-504 (733)
473 KOG0922|consensus 27.2 34 0.00074 38.6 1.7 19 114-132 65-83 (674)
474 PF02463 SMC_N: RecF/RecN/SMC 27.1 31 0.00067 33.2 1.2 17 116-132 25-41 (220)
475 TIGR03783 Bac_Flav_CT_G Bacter 27.1 20 0.00043 42.3 -0.2 21 114-134 437-457 (829)
476 PRK08533 flagellar accessory p 27.0 28 0.00061 34.2 0.9 17 115-131 24-40 (230)
477 cd01853 Toc34_like Toc34-like 27.0 25 0.00054 35.1 0.5 39 91-132 10-48 (249)
478 cd03272 ABC_SMC3_euk Eukaryoti 26.9 22 0.00048 34.8 0.2 16 117-132 25-40 (243)
479 PF05707 Zot: Zonular occluden 26.7 28 0.00061 33.1 0.8 15 118-132 3-17 (193)
480 KOG2035|consensus 26.7 28 0.00062 35.3 0.8 32 103-134 21-53 (351)
481 PRK09825 idnK D-gluconate kina 26.6 29 0.00062 32.6 0.9 16 117-132 5-20 (176)
482 PF00519 PPV_E1_C: Papillomavi 26.6 35 0.00076 36.4 1.5 27 107-133 252-280 (432)
483 PTZ00301 uridine kinase; Provi 26.5 28 0.00062 33.8 0.8 14 118-131 6-19 (210)
484 TIGR03346 chaperone_ClpB ATP-d 26.5 41 0.00088 39.9 2.3 18 115-132 595-612 (852)
485 TIGR02442 Cob-chelat-sub cobal 26.5 41 0.00089 38.4 2.2 42 83-132 1-42 (633)
486 COG3598 RepA RecA-family ATPas 26.4 29 0.00063 36.0 0.9 45 87-133 62-107 (402)
487 PF03969 AFG1_ATPase: AFG1-lik 26.3 23 0.00051 37.4 0.2 18 116-133 63-80 (362)
488 PRK11784 tRNA 2-selenouridine 26.3 25 0.00053 37.0 0.4 31 103-134 130-160 (345)
489 PRK14738 gmk guanylate kinase; 26.2 28 0.0006 33.5 0.7 19 114-132 12-30 (206)
490 TIGR01967 DEAH_box_HrpA ATP-de 26.1 42 0.00092 41.3 2.3 25 107-132 75-99 (1283)
491 KOG1534|consensus 26.0 38 0.00083 33.0 1.5 15 116-130 4-18 (273)
492 COG4185 Uncharacterized protei 25.8 42 0.00092 31.3 1.7 34 416-452 136-169 (187)
493 PRK13830 conjugal transfer pro 25.8 24 0.00052 41.6 0.2 19 115-133 456-474 (818)
494 PRK05201 hslU ATP-dependent pr 25.8 27 0.0006 37.7 0.6 17 115-131 50-66 (443)
495 PRK13946 shikimate kinase; Pro 25.8 29 0.00064 32.6 0.8 17 115-131 10-26 (184)
496 PRK00625 shikimate kinase; Pro 25.8 28 0.00061 32.6 0.6 15 117-131 2-16 (173)
497 PRK06731 flhF flagellar biosyn 25.5 22 0.00047 36.0 -0.2 19 116-134 76-94 (270)
498 PRK06851 hypothetical protein; 25.5 34 0.00074 36.3 1.2 28 105-132 204-231 (367)
499 PRK07667 uridine kinase; Provi 25.5 38 0.00081 32.2 1.4 21 112-132 14-34 (193)
500 PRK13947 shikimate kinase; Pro 25.4 29 0.00063 31.8 0.6 15 117-131 3-17 (171)
No 1
>KOG0243|consensus
Probab=100.00 E-value=2.5e-91 Score=771.31 Aligned_cols=369 Identities=41% Similarity=0.627 Sum_probs=318.1
Q ss_pred CCCCCCeEEEEEeCCCCcchhccCCccEEEEcCCCceeEeecCCCCCCCCCCCCceeeeCCccccCCCcchhhhhccchH
Q psy7618 26 HHQDENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYGMQATQTEIYENSVRP 105 (560)
Q Consensus 26 ~~~~~~ikV~vRvRP~~~~e~~~~~~~~v~~~~~~~~v~i~~~~~~~~~~~~~~~~~F~FD~VF~~~a~Q~~vf~~~~~p 105 (560)
.+...||+|+|||||++..|....+..+|.+++....|.+...-. ...-.++|+||+||+|++.|++||+.+|.|
T Consensus 45 ~e~~~NIqVivRcRp~n~~E~~~~s~~VVs~~~~~kEV~v~~~~~-----sk~~~k~ftFDkVFGpes~Q~d~Y~~~v~p 119 (1041)
T KOG0243|consen 45 KEKEVNIQVIVRCRPRNDRERKSKSSVVVSCDGIRKEVAVRQTIA-----SKQIDKTFTFDKVFGPESQQEDLYDQAVSP 119 (1041)
T ss_pred CCCCCceEEEEEeCCCCchhhhcCCCeEEecCCCcceEEEecccc-----cccccceeecceeeCcchhHHHHHHHHHHH
Confidence 345679999999999999999999999999988766677754311 111468899999999999999999999999
Q ss_pred HHHHHhcCCcEEEEEEcccCCCceEEecc--------CCCCcChHHHHHHHHHHHHhhhccCcEEEEeehhhhhhhhhhh
Q psy7618 106 MVNHMLHGYNVTIFAYGQTGTGKTFTMEG--------SQMERGIMQNAFRQIFDFKQKEKRHKCIVECCYLELYQGKIRD 177 (560)
Q Consensus 106 lv~~~l~G~N~~i~aYG~TgSGKTyTm~G--------~~~~~Giipr~l~~lF~~~~~~~~~~~~v~~s~~e~~~~~~~d 177 (560)
+|+.|+.|||||||||||||+||||||.| .+.++|||||++.+||+.+.... ..|.|+
T Consensus 120 ~i~eVl~GyNCTIFAYGQTGTGKTyTMeG~~~~~~g~l~~~aGIIPRal~~IFd~Le~~~-~EYsvK------------- 185 (1041)
T KOG0243|consen 120 IIKEVLEGYNCTIFAYGQTGTGKTYTMEGGERKKNGELPSEAGIIPRALRQIFDTLEAQG-AEYSVK------------- 185 (1041)
T ss_pred HHHHHhccCCceEEEecCCCCCceeeeecCcccccCCCCccCCcchHHHHHHHHHHHhcC-CeEEEE-------------
Confidence 99999999999999999999999999999 56789999999999999887754 566666
Q ss_pred ccccCCCcccchhhhhhcccCCCCCCcccchhhhhhcccccceeeeeeeeehhhhhhhhcCCCCCcccccccccCCCCCC
Q psy7618 178 LLNVSRPTLFDTKAKLNIYHGRQSNGTQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGL 257 (560)
Q Consensus 178 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~~~~~~~~~~~~~~ 257 (560)
|||+|+|||+++|||++..... ..
T Consensus 186 --------------------------------------------VSfLELYNEEl~DLLa~~~~~~----~~-------- 209 (1041)
T KOG0243|consen 186 --------------------------------------------VSFLELYNEELTDLLASEDTSD----KK-------- 209 (1041)
T ss_pred --------------------------------------------EEehhhhhHHHHHhcCCccccc----cc--------
Confidence 7777778888888887664210 00
Q ss_pred cccccchhHHHHHhhhccccccccccccccccccceeeEeecchhhcccccCCCcccccCCcccceecCCeEEEcCCHHH
Q psy7618 258 RSVTCQSVEEIENCRKKGYKSRKTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSVEE 337 (560)
Q Consensus 258 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~lei~~~~~~dll~~~~~~~~~~~~~~~~~v~gL~~~~v~s~ee 337 (560)
+++.. .++.. +.++|++|+||.++.|+++.|
T Consensus 210 -------------------------------------~~~k~----------~~~~~--~~kggV~vkGlEEi~V~~A~e 240 (1041)
T KOG0243|consen 210 -------------------------------------LRIKD----------DSTIV--DGKGGVIVKGLEEIIVTNADE 240 (1041)
T ss_pred -------------------------------------ccccc----------CCccc--CCcCcEEEecceeeeecchhH
Confidence 11111 11111 567899999999999999999
Q ss_pred HHHHHHHHHhhcccccccCCCCCCCcEEEEEEEEEEEe--CCCCceeEeeeeeeeeccCCcccccccCcchhhHHHhHhh
Q psy7618 338 IENCRKKGYKSRKTASTYFNDYSSRSHAIFIVTLKVLN--SKTGKALIHSKLNLVDLAGSECLQKSNATDIRLKECCEIN 415 (560)
Q Consensus 338 ~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~l~~~~--~~~~~~~~~s~L~~VDLAGSEr~~~s~~~g~r~~E~~~IN 415 (560)
++.+|.+|...|++|+|.||+.|||||+||+|+|.... ..+.+.++.|+|+||||||||.++++|+.+.|.+|++.||
T Consensus 241 i~klLekGs~kRrtAaTl~N~~SSRSHsIFsItvhike~t~~geelvK~GKLNLVDLAGSENI~RSGA~~~RArEAG~IN 320 (1041)
T KOG0243|consen 241 IYKLLEKGSKKRRTAATLMNDQSSRSHSIFSITVHIKENTPEGEELVKIGKLNLVDLAGSENISRSGARNGRAREAGEIN 320 (1041)
T ss_pred HHHHHHhhhhHhHHHHHHhhhhccccceEEEEEEEEecCCCcchhhHhhcccceeeccccccccccccccchhHHhhhhh
Confidence 99999999999999999999999999999999997763 3344567889999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhhhCCCCCcCCCCCchhhhhccccCCCceEEEEEeeCCCcccHHHHHHHHHHHHHhcccccccccccc-
Q psy7618 416 LSLLAVNKVISSTVAGKTYIPYRDSLLTQLLQDSFGGNAKTLMIANIGPAASTYKETLVTLEYANRAKKIKNAPNINFY- 494 (560)
Q Consensus 416 ~SL~aL~~vI~al~~~~~~iPyRdSkLT~lLqdsLgGnskt~mI~~vsP~~~~~~ETl~TL~fa~rak~Ikn~p~~n~~- 494 (560)
+||++||+||+||..+..|||||+|||||||||||||.+||+|||||||+..+++||++||.||.|||+|+|+|.+|..
T Consensus 321 qSLLTLGRVInALVe~s~HIPYRESKLTRLLQDSLGGkTKT~iIATiSPa~~~lEETlSTLEYA~RAKnIkNKPevNQkl 400 (1041)
T KOG0243|consen 321 QSLLTLGRVINALVEHSGHIPYRESKLTRLLQDSLGGKTKTCIIATISPAKHNLEETLSTLEYAHRAKNIKNKPEVNQKL 400 (1041)
T ss_pred HHHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhCCCceeEEEEEeCCCcccHHHHHHHHHHHHHhhhccCCCccchHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred cchhhhcHHH-HHHHHHHHHHHHHh
Q psy7618 495 REDRCHNEEK-MREKYKKALEDLAQ 518 (560)
Q Consensus 495 ~~~~~~~~~~-~~~~l~~~l~~l~~ 518 (560)
.++.+++.+- +|++||..|...+.
T Consensus 401 ~K~~llKd~~~EIerLK~dl~AaRe 425 (1041)
T KOG0243|consen 401 MKKTLLKDLYEEIERLKRDLAAARE 425 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 3455555555 99999998866533
No 2
>KOG4280|consensus
Probab=100.00 E-value=1.6e-91 Score=744.19 Aligned_cols=362 Identities=42% Similarity=0.630 Sum_probs=323.0
Q ss_pred CCCCeEEEEEeCCCCcchhccCCccEEEEcCCCceeEeecCCCCCCCCCCCCceeeeCCccccCCCcchhhhhccchHHH
Q psy7618 28 QDENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYGMQATQTEIYENSVRPMV 107 (560)
Q Consensus 28 ~~~~ikV~vRvRP~~~~e~~~~~~~~v~~~~~~~~v~i~~~~~~~~~~~~~~~~~F~FD~VF~~~a~Q~~vf~~~~~plv 107 (560)
...+++|+||+||++..+.......++.+++....+.+.++... ..+..+.|+||.||+++++|++||+.++.|+|
T Consensus 3 ~~~~v~vvvr~rPl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~ftfD~vf~~~stQ~dvy~~~~~~lV 78 (574)
T KOG4280|consen 3 PACKVKVVVRVRPLSAAERSELLKSILSVDPAHGRVSLKNPVAG----IEGKPKSFTFDAVFDSDSTQDDVYQETVAPLV 78 (574)
T ss_pred cccceeEEEeecCCCchhhhhhhccccccccccceeeecCCccc----ccCCCCCceeeeeecCCCCHHHHHHHHhHHHH
Confidence 35689999999999998888888888888888888887765432 23445679999999999999999999999999
Q ss_pred HHHhcCCcEEEEEEcccCCCceEEeccC-CCCcChHHHHHHHHHHHHhhhc-cCcEEEEeehhhhhhhhhhhccccCCCc
Q psy7618 108 NHMLHGYNVTIFAYGQTGTGKTFTMEGS-QMERGIMQNAFRQIFDFKQKEK-RHKCIVECCYLELYQGKIRDLLNVSRPT 185 (560)
Q Consensus 108 ~~~l~G~N~~i~aYG~TgSGKTyTm~G~-~~~~Giipr~l~~lF~~~~~~~-~~~~~v~~s~~e~~~~~~~dll~~~~~~ 185 (560)
++|++|||+||||||||||||||||+|+ +...|||||++++||..|+..+ ...|.|+
T Consensus 79 ~svl~GyNgtvFaYGQTGsGKTyTM~G~~~~~~GiiPraf~~LF~~I~~~~~~~~f~vr--------------------- 137 (574)
T KOG4280|consen 79 ESVLEGYNGTVFAYGQTGSGKTYTMIGPDPELRGLIPRAFEHLFRHIDERKEKTRFLVR--------------------- 137 (574)
T ss_pred HHHhcccCceEEEeccCCCCCceEeeCCChhhCCchhHHHHHHHHHHHhccccceEEEE---------------------
Confidence 9999999999999999999999999999 6689999999999999999876 3346655
Q ss_pred ccchhhhhhcccCCCCCCcccchhhhhhcccccceeeeeeeeehhhhhhhhcCCCCCcccccccccCCCCCCcccccchh
Q psy7618 186 LFDTKAKLNIYHGRQSNGTQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSV 265 (560)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 265 (560)
+||+|||||.|+|||++.++.
T Consensus 138 ------------------------------------vS~lEiYnE~i~DLL~~~~~~----------------------- 158 (574)
T KOG4280|consen 138 ------------------------------------VSYLEIYNESIRDLLSPVNPK----------------------- 158 (574)
T ss_pred ------------------------------------eehHHHHhHHHHHHhCccCcC-----------------------
Confidence 777888888888888766420
Q ss_pred HHHHHhhhccccccccccccccccccceeeEeecchhhcccccCCCcccccCCcccceecCCeEEEcCCHHHHHHHHHHH
Q psy7618 266 EEIENCRKKGYKSRKTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSVEEIENCRKKG 345 (560)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~v~~s~lei~~~~~~dll~~~~~~~~~~~~~~~~~v~gL~~~~v~s~ee~~~ll~~g 345 (560)
.++|.+ +++.|+||+||+++.|.|+++++.+|..|
T Consensus 159 ----------------------------~l~lre-----------------~p~~Gv~V~nlse~~v~s~~d~~~~l~~G 193 (574)
T KOG4280|consen 159 ----------------------------GLELRE-----------------DPKCGVYVENLSEMDVESAEDAQQLLVVG 193 (574)
T ss_pred ----------------------------CceeeE-----------------cCCCceEecCcceeecCCHHHHHHHHHHH
Confidence 145554 23569999999999999999999999999
Q ss_pred HhhcccccccCCCCCCCcEEEEEEEEEEEe--CCCCceeEeeeeeeeeccCCcccccccCcchhhHHHhHhhhhHHHHHH
Q psy7618 346 YKSRKTASTYFNDYSSRSHAIFIVTLKVLN--SKTGKALIHSKLNLVDLAGSECLQKSNATDIRLKECCEINLSLLAVNK 423 (560)
Q Consensus 346 ~~~R~~~~t~~N~~SSRSH~If~i~l~~~~--~~~~~~~~~s~L~~VDLAGSEr~~~s~~~g~r~~E~~~IN~SL~aL~~ 423 (560)
.++|++++|.||..|||||+||+|+|+... .++......|+|+|||||||||..+++++|.|++|+.+||+||++||+
T Consensus 194 ~~nR~vgat~mn~~SsRSH~ift~~i~~~~~~~~~~~~~~~~rlnlvDLagsEr~~~tga~G~rlkEa~~IN~SLs~LG~ 273 (574)
T KOG4280|consen 194 LANRRVGATSMNEESSRSHAIFTIHIESSEKSDGGLMSGRSSKLNLVDLAGSERQSKTGAEGERLKEATNINLSLSALGN 273 (574)
T ss_pred HhhcchhhccCCcccccceEEEEEEEEeecccCCCccccccceeeeeeccchhhhcccCccchhhhhhcccchhHHHHHH
Confidence 999999999999999999999999999842 234456778999999999999999999999999999999999999999
Q ss_pred HHHhhhCCCC-CcCCCCCchhhhhccccCCCceEEEEEeeCCCcccHHHHHHHHHHHHHhcccccccccccccchhhhcH
Q psy7618 424 VISSTVAGKT-YIPYRDSLLTQLLQDSFGGNAKTLMIANIGPAASTYKETLVTLEYANRAKKIKNAPNINFYREDRCHNE 502 (560)
Q Consensus 424 vI~al~~~~~-~iPyRdSkLT~lLqdsLgGnskt~mI~~vsP~~~~~~ETl~TL~fa~rak~Ikn~p~~n~~~~~~~~~~ 502 (560)
||.+|+++++ ||||||||||+||||+|||||+|+|||||+|...+++||++||+||+|||.|+|+|.+|+++++...++
T Consensus 274 vI~aLvd~~~~HIPYRdSkLT~LLqdSLGGN~kT~mianvsp~~~~~~ETlsTLrfA~Rak~I~nk~~ined~~~~~~~~ 353 (574)
T KOG4280|consen 274 VISALVDGSKTHIPYRDSKLTRLLQDSLGGNSKTTMIANVSPSSDNYEETLSTLRFAQRAKAIKNKPVINEDPKDALLRE 353 (574)
T ss_pred HHHHHhccccCCCCcchhHHHHHHHHHcCCCceEEEEEecCchhhhhHHHHHHHHHHHHHHHhhccccccCCcchhhHHH
Confidence 9999999987 999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred HH-HHHHHHHHHHHHHh
Q psy7618 503 EK-MREKYKKALEDLAQ 518 (560)
Q Consensus 503 ~~-~~~~l~~~l~~l~~ 518 (560)
++ +|+.|+.++.....
T Consensus 354 lq~ei~~Lk~~l~~~~~ 370 (574)
T KOG4280|consen 354 LQEEIERLKKELDPGGS 370 (574)
T ss_pred HHHHHHHHHHhhccccC
Confidence 77 99999999987633
No 3
>KOG0245|consensus
Probab=100.00 E-value=5.1e-90 Score=746.40 Aligned_cols=356 Identities=38% Similarity=0.558 Sum_probs=312.7
Q ss_pred CCCeEEEEEeCCCCcchhccCCccEEEEcCCCceeEeecCCCCCCCCCCCCceeeeCCccccC-------CCcchhhhhc
Q psy7618 29 DENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYGM-------QATQTEIYEN 101 (560)
Q Consensus 29 ~~~ikV~vRvRP~~~~e~~~~~~~~v~~~~~~~~v~i~~~~~~~~~~~~~~~~~F~FD~VF~~-------~a~Q~~vf~~ 101 (560)
..+|+|+|||||++..|....+.+++.+..+..++.. +. .+.....|+||+.||. .++|..||+.
T Consensus 3 ~ssv~VAVRVRPfn~rE~s~~~k~Vvqm~gn~ttii~--~~------~~k~~~~FtfD~SYWS~d~edPhfAsQ~qVYed 74 (1221)
T KOG0245|consen 3 GSSVKVAVRVRPFNAREKSRDAKCVVQMQGNTTTIIN--PK------GSKDAPKFTFDYSYWSHDSEDPHFASQKQVYED 74 (1221)
T ss_pred CCceEEEEEeccchhhhhhcccceEEEecCCceeeec--CC------CcccCCceecceeeecCCCCCCchhhHHHHHHH
Confidence 4579999999999999998888899888765544432 21 1233445999999865 3789999999
Q ss_pred cchHHHHHHhcCCcEEEEEEcccCCCceEEeccCC--CCcChHHHHHHHHHHHHhhhccCcEEEEeehhhhhhhhhhhcc
Q psy7618 102 SVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQ--MERGIMQNAFRQIFDFKQKEKRHKCIVECCYLELYQGKIRDLL 179 (560)
Q Consensus 102 ~~~plv~~~l~G~N~~i~aYG~TgSGKTyTm~G~~--~~~Giipr~l~~lF~~~~~~~~~~~~v~~s~~e~~~~~~~dll 179 (560)
++.|+++.+|+|||+||||||||||||||||+|.. .++|||||++++||..+...+...
T Consensus 75 lg~~mL~~AfEGYN~ClFAYGQTGSGKSYTMMG~~~~~e~GIIPrlCEeLF~ri~~nq~~~------------------- 135 (1221)
T KOG0245|consen 75 LGREMLDHAFEGYNVCLFAYGQTGSGKSYTMMGFQEPDEPGIIPRLCEELFSRIADNQSQQ------------------- 135 (1221)
T ss_pred HhHHHHHHHhcccceEEEEeccCCCCcceeeeccCCCCCCCchhHHHHHHHHHHhhccccc-------------------
Confidence 99999999999999999999999999999999987 899999999999999988754322
Q ss_pred ccCCCcccchhhhhhcccCCCCCCcccchhhhhhcccccceeeeeeeeehhhhhhhhcC-CCCCcccccccccCCCCCCc
Q psy7618 180 NVSRPTLFDTKAKLNIYHGRQSNGTQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNV-SRPTLFDTKAKLTLPCKGLR 258 (560)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~-~~~~~~~~~~~~~~~~~~~~ 258 (560)
-++.|++||||||+|+|+|||+. .+. ..
T Consensus 136 ------------------------------------~sy~VevSymEIYcErVrDLL~~p~~k------g~--------- 164 (1221)
T KOG0245|consen 136 ------------------------------------MSYSVEVSYMEIYCERVRDLLNAPKSK------GG--------- 164 (1221)
T ss_pred ------------------------------------ceEEEEEeehhHHHHHHHHHhhCCCCC------CC---------
Confidence 22346699999999999999973 321 11
Q ss_pred ccccchhHHHHHhhhccccccccccccccccccceeeEeecchhhcccccCCCcccccCCcccceecCCeEEEcCCHHHH
Q psy7618 259 SVTCQSVEEIENCRKKGYKSRKTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSVEEI 338 (560)
Q Consensus 259 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~lei~~~~~~dll~~~~~~~~~~~~~~~~~v~gL~~~~v~s~ee~ 338 (560)
|.+++ +| ..|+||++|+.+.|+|+.|+
T Consensus 165 ------------------------------------LRVRE----------HP-------~lGPYVedLS~~aV~Sy~dI 191 (1221)
T KOG0245|consen 165 ------------------------------------LRVRE----------HP-------ILGPYVEDLSKLAVTSYADI 191 (1221)
T ss_pred ------------------------------------ceeec----------cC-------ccChhHhHhhhcccccHHHH
Confidence 55555 44 45999999999999999999
Q ss_pred HHHHHHHHhhcccccccCCCCCCCcEEEEEEEEEEEeCC---CCceeEeeeeeeeeccCCcccccccCcchhhHHHhHhh
Q psy7618 339 ENCRKKGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSK---TGKALIHSKLNLVDLAGSECLQKSNATDIRLKECCEIN 415 (560)
Q Consensus 339 ~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~l~~~~~~---~~~~~~~s~L~~VDLAGSEr~~~s~~~g~r~~E~~~IN 415 (560)
..+|..|++.|++|+|+||+.|||||+||+|.+.+.... +....++|+|+|||||||||+..+|+.|+|+|||.+||
T Consensus 192 ~~~md~GNkqRTtAATnMNdtSSRSHaVFtIvftQk~~~~~~~l~sek~SKIsLVDLAGSERasstGa~G~RLKEGa~IN 271 (1221)
T KOG0245|consen 192 QDLMDEGNKQRTTAATNMNDTSSRSHAVFTIVFTQKKHDQDTGLDSEKVSKISLVDLAGSERASSTGANGDRLKEGANIN 271 (1221)
T ss_pred HHHHHhcchhhhhhhhccccccccceeEEEEEEEeeeccccCCCcceeeeeeeEEeccCcccccccCCCccchhcccccc
Confidence 999999999999999999999999999999999987332 24577899999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhhhCCC-------CCcCCCCCchhhhhccccCCCceEEEEEeeCCCcccHHHHHHHHHHHHHhcccccc
Q psy7618 416 LSLLAVNKVISSTVAGK-------TYIPYRDSLLTQLLQDSFGGNAKTLMIANIGPAASTYKETLVTLEYANRAKKIKNA 488 (560)
Q Consensus 416 ~SL~aL~~vI~al~~~~-------~~iPyRdSkLT~lLqdsLgGnskt~mI~~vsP~~~~~~ETl~TL~fa~rak~Ikn~ 488 (560)
|||++||+||+||++.+ .+||||||.|||||++.|||||||+|||++||...+|+|||+|||||.|||+|+|.
T Consensus 272 KSLtTLGkVISALAe~~~~k~~ks~fIPYRDSVLTWLLkEnLGGNSKTaMIAAlSPAdiNyeETLSTLRYAdRAK~Iv~~ 351 (1221)
T KOG0245|consen 272 KSLTTLGKVISALAESQKGKKKKSDFIPYRDSVLTWLLKENLGGNSKTAMIAALSPADINYEETLSTLRYADRAKQIVNN 351 (1221)
T ss_pred hHHHHHHHHHHHHHHHhccCCCCCccccchHHHHHHHHHHhcCCcchhhhhhccChhhcChHHHHHHHHHhhHhhhhhcc
Confidence 99999999999998643 49999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccchhhhcHHH-HHHHHHHHHHH
Q psy7618 489 PNINFYREDRCHNEEK-MREKYKKALED 515 (560)
Q Consensus 489 p~~n~~~~~~~~~~~~-~~~~l~~~l~~ 515 (560)
+++|+++...++++++ |+.+||..+..
T Consensus 352 avVNEdpnaKLIRELreEv~rLksll~~ 379 (1221)
T KOG0245|consen 352 AVVNEDPNAKLIRELREEVARLKSLLRA 379 (1221)
T ss_pred ceeCCCccHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999 99999998854
No 4
>KOG0241|consensus
Probab=100.00 E-value=2.8e-83 Score=682.03 Aligned_cols=401 Identities=35% Similarity=0.534 Sum_probs=341.0
Q ss_pred CCCeEEEEEeCCCCcchhccCCccEEEEcCCCceeEeecCCCCCCCCCCCCceeeeCCccccCC-------Ccchhhhhc
Q psy7618 29 DENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYGMQ-------ATQTEIYEN 101 (560)
Q Consensus 29 ~~~ikV~vRvRP~~~~e~~~~~~~~v~~~~~~~~v~i~~~~~~~~~~~~~~~~~F~FD~VF~~~-------a~Q~~vf~~ 101 (560)
+.+|||+|||||++.+|......+++.++.....+.+.++... .....++++|.||++|++. ++|+.||+.
T Consensus 3 ~~kVkVaVRVRP~nrREl~l~tk~vv~vd~~q~vl~~~pp~~~--~~~~k~pktFAFDhcF~s~dpes~n~agQE~Vf~~ 80 (1714)
T KOG0241|consen 3 DAKVKVAVRVRPMNRRELELSTKCVVEVDKNQTVLHPPPPNHK--IGESKGPKTFAFDHCFWSMDPESKNYAGQETVFKC 80 (1714)
T ss_pred CcceEEEEEecccchhhhcccccceEEeccCceeecCCCcccc--ccccCCCceeecccccccCCccccccccchhHHHh
Confidence 5689999999999999999999999999987766655544432 2334678999999999764 789999999
Q ss_pred cchHHHHHHhcCCcEEEEEEcccCCCceEEeccCCCCcChHHHHHHHHHHHHhhhccCcEEEEeehhhhhhhhhhhcccc
Q psy7618 102 SVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQMERGIMQNAFRQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNV 181 (560)
Q Consensus 102 ~~~plv~~~l~G~N~~i~aYG~TgSGKTyTm~G~~~~~Giipr~l~~lF~~~~~~~~~~~~v~~s~~e~~~~~~~dll~~ 181 (560)
++.-+|+++|+|||+||||||||||||||||+|..+++|||||.+..||..+++..+..
T Consensus 81 lG~~il~naf~GyNaCifaYGQtGsGKsYsmmGt~~QpGiIPrlc~~lFe~I~k~~n~~--------------------- 139 (1714)
T KOG0241|consen 81 LGEGILENAFQGYNACIFAYGQTGSGKSYSMMGTAEQPGIIPRLCESLFERIDKESNPS--------------------- 139 (1714)
T ss_pred cchHHHHHHhhccceeeEEecccCCCceeEeeccCCCCCchhHHHHHHHHHHHhccCCC---------------------
Confidence 99999999999999999999999999999999999999999999999999998765322
Q ss_pred CCCcccchhhhhhcccCCCCCCcccchhhhhhcccccceeeeeeeeehhhhhhhhcCCCCCcccccccccCCCCCCcccc
Q psy7618 182 SRPTLFDTKAKLNIYHGRQSNGTQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVT 261 (560)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (560)
..+.|++||+|||||+++|||+|..+. .
T Consensus 140 ----------------------------------~tfkVeVSymEIynEkv~DLLdPk~ss-----q------------- 167 (1714)
T KOG0241|consen 140 ----------------------------------QTFKVEVSYMEIYNEKVRDLLDPKGSS-----Q------------- 167 (1714)
T ss_pred ----------------------------------ceEEEEEEHHHHhhcchhhhhCCCCCc-----c-------------
Confidence 223366889999999999999877431 0
Q ss_pred cchhHHHHHhhhccccccccccccccccccceeeEeecchhhcccccCCCcccccCCcccceecCCeEEEcCCHHHHHHH
Q psy7618 262 CQSVEEIENCRKKGYKSRKTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSVEEIENC 341 (560)
Q Consensus 262 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~lei~~~~~~dll~~~~~~~~~~~~~~~~~v~gL~~~~v~s~ee~~~l 341 (560)
-+.+++ +.-.|.+|.||++..|+|++|+-.+
T Consensus 168 --------------------------------tlkVre-----------------hsvlGp~vdGLS~laV~S~qdId~l 198 (1714)
T KOG0241|consen 168 --------------------------------TLKVRE-----------------HSVLGPYVDGLSQLAVTSFQDIDSL 198 (1714)
T ss_pred --------------------------------eeEEee-----------------cccccccccchhhhhcccHHHHHHH
Confidence 044444 3334999999999999999999999
Q ss_pred HHHHHhhcccccccCCCCCCCcEEEEEEEEEEE--eCCCC-ceeEeeeeeeeeccCCcccccccCcchhhHHHhHhhhhH
Q psy7618 342 RKKGYKSRKTASTYFNDYSSRSHAIFIVTLKVL--NSKTG-KALIHSKLNLVDLAGSECLQKSNATDIRLKECCEINLSL 418 (560)
Q Consensus 342 l~~g~~~R~~~~t~~N~~SSRSH~If~i~l~~~--~~~~~-~~~~~s~L~~VDLAGSEr~~~s~~~g~r~~E~~~IN~SL 418 (560)
+..|.++|++++|+||..|||||+||.|.+.+. +...+ ...+.|+|.|||||||||+.++++.|.|++|+.+||+||
T Consensus 199 m~egnKsrtvaatnmn~EssrsHaVFslvvtQ~l~D~ktg~SgeKvsklslVDLAgserasktga~g~rlkegsNinkSL 278 (1714)
T KOG0241|consen 199 MSEGNKSRTVAATNMNEESSRSHAVFSLVVTQTLYDLKTGHSGEKVSKLSLVDLAGSERASKTGAAGSRLKEGSNINKSL 278 (1714)
T ss_pred HHhccccceeeeecccccccccceeEEEEEeeEEeccccCcchhheeeeeEEEeccccccccccchhhhhhhcCCcchhh
Confidence 999999999999999999999999999999876 33322 234679999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhCCC------CCcCCCCCchhhhhccccCCCceEEEEEeeCCCcccHHHHHHHHHHHHHhcccccccccc
Q psy7618 419 LAVNKVISSTVAGK------TYIPYRDSLLTQLLQDSFGGNAKTLMIANIGPAASTYKETLVTLEYANRAKKIKNAPNIN 492 (560)
Q Consensus 419 ~aL~~vI~al~~~~------~~iPyRdSkLT~lLqdsLgGnskt~mI~~vsP~~~~~~ETl~TL~fa~rak~Ikn~p~~n 492 (560)
++||.||++|+..+ ++||||||.||+||||+|||||+|+||+||||++.+|+|||+|||||.|||+|+|++++|
T Consensus 279 ttLglVIsaLadq~n~kgkdKfvPYrDSVLTwLLkD~LGGNsrTvMiatvSPaAdnyeeTlStLRYadrAkrIvN~avvN 358 (1714)
T KOG0241|consen 279 TTLGLVISALADQKNGKGKDKFVPYRDSVLTWLLKDNLGGNSRTVMIATVSPAADNYEETLSTLRYADRAKRIVNHAVVN 358 (1714)
T ss_pred HHHHHHHHHHHHhhcCCCccccccchhHHHHHHHHhhcCCCceeEEEEEecccccchHHHHHHHHHHHHHHHhhcccccc
Confidence 99999999998643 699999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhcHHH-HHHHHHHHHHH-------------------HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy7618 493 FYREDRCHNEEK-MREKYKKALED-------------------LAQCKMDYEMAEKRADTLKNMAIKQMKDVAELLVDIG 552 (560)
Q Consensus 493 ~~~~~~~~~~~~-~~~~l~~~l~~-------------------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (560)
.++..+.+++++ |++.|+.+|+. ++++...||+-.+..+.+..+..++|..+...++..|
T Consensus 359 edpnarvirElReEve~lr~qL~~ae~~~~~el~e~l~esekli~ei~~twEEkl~ktE~in~erq~~L~~~gis~~~sg 438 (1714)
T KOG0241|consen 359 EDPNARVIRELREEVEKLREQLEQAEAMKLPELKEKLEESEKLIKEITVTWEEKLRKTEEINQERQAQLESMGISLENSG 438 (1714)
T ss_pred CCchHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999987 78888777754 1334445555556666666677777777777776654
Q ss_pred c
Q psy7618 553 K 553 (560)
Q Consensus 553 ~ 553 (560)
.
T Consensus 439 i 439 (1714)
T KOG0241|consen 439 I 439 (1714)
T ss_pred c
Confidence 3
No 5
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=1.5e-82 Score=707.50 Aligned_cols=353 Identities=34% Similarity=0.529 Sum_probs=295.0
Q ss_pred CCCeEEEEEeCCCCcchhccCCccEEEEcCCCceeEeecCCCCCCCCCCCCceeeeCCccccCCCcchhhhhccchHHHH
Q psy7618 29 DENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYGMQATQTEIYENSVRPMVN 108 (560)
Q Consensus 29 ~~~ikV~vRvRP~~~~e~~~~~~~~v~~~~~~~~v~i~~~~~~~~~~~~~~~~~F~FD~VF~~~a~Q~~vf~~~~~plv~ 108 (560)
+.+|+|||||||++..|.. ...++.+ .+..+.+. .+.|.||+||+++++|++||+.++.|+|+
T Consensus 97 ds~VkV~VRVRPl~~~E~g--~~iV~~~--s~dsl~I~-------------~qtFtFD~VFdp~aTQedVFe~vv~PLV~ 159 (1320)
T PLN03188 97 DSGVKVIVRMKPLNKGEEG--EMIVQKM--SNDSLTIN-------------GQTFTFDSIADPESTQEDIFQLVGAPLVE 159 (1320)
T ss_pred CCCeEEEEEcCCCCCccCC--CeeEEEc--CCCeEEEe-------------CcEEeCCeeeCCCCCHHHHHHHHHHHHHH
Confidence 6799999999999887632 2222222 23344431 35799999999999999999999999999
Q ss_pred HHhcCCcEEEEEEcccCCCceEEeccCC----------CCcChHHHHHHHHHHHHhhhccCcEEEEeehhhhhhhhhhhc
Q psy7618 109 HMLHGYNVTIFAYGQTGTGKTFTMEGSQ----------MERGIMQNAFRQIFDFKQKEKRHKCIVECCYLELYQGKIRDL 178 (560)
Q Consensus 109 ~~l~G~N~~i~aYG~TgSGKTyTm~G~~----------~~~Giipr~l~~lF~~~~~~~~~~~~v~~s~~e~~~~~~~dl 178 (560)
++++|||+||||||||||||||||+|+. .++|||||++++||..+.......
T Consensus 160 svLdGyNaTIFAYGQTGSGKTYTM~G~~~~~~de~~s~~e~GIIPRaledLF~~I~e~q~k~------------------ 221 (1320)
T PLN03188 160 NCLAGFNSSVFAYGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERLFARINEEQIKH------------------ 221 (1320)
T ss_pred HHhcCCcceeecCCCCCCCCCEeeCCCCCcccccccccccCCchHHHHHHHHHHHHhhhhhc------------------
Confidence 9999999999999999999999999964 478999999999999886532100
Q ss_pred cccCCCcccchhhhhhcccCCCCCCcccchhhhhhcccccceeeeeeeeehhhhhhhhcCCCCCcccccccccCCCCCCc
Q psy7618 179 LNVSRPTLFDTKAKLNIYHGRQSNGTQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLR 258 (560)
Q Consensus 179 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~~~~~~~~~~~~~~~ 258 (560)
.+....+.|.+||+|||||+|+|||++....
T Consensus 222 ---------------------------------~d~~~~y~V~vSyLEIYNEkI~DLLsp~~k~---------------- 252 (1320)
T PLN03188 222 ---------------------------------ADRQLKYQCRCSFLEIYNEQITDLLDPSQKN---------------- 252 (1320)
T ss_pred ---------------------------------cccccceEEEEEEEeeecCcceeccccccCC----------------
Confidence 0011123466999999999999999754210
Q ss_pred ccccchhHHHHHhhhccccccccccccccccccceeeEeecchhhcccccCCCcccccCCcccceecCCeEEEcCCHHHH
Q psy7618 259 SVTCQSVEEIENCRKKGYKSRKTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSVEEI 338 (560)
Q Consensus 259 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~lei~~~~~~dll~~~~~~~~~~~~~~~~~v~gL~~~~v~s~ee~ 338 (560)
+.|.+ +.+++++|.||+++.|.|++|+
T Consensus 253 ------------------------------------L~IRE-----------------D~kgGv~VeGLTEv~V~S~ED~ 279 (1320)
T PLN03188 253 ------------------------------------LQIRE-----------------DVKSGVYVENLTEEYVKTMKDV 279 (1320)
T ss_pred ------------------------------------ceEEE-----------------cCCCCeEeCCCeEEeCCCHHHH
Confidence 33333 3456899999999999999999
Q ss_pred HHHHHHHHhhcccccccCCCCCCCcEEEEEEEEEEEeC---CCCceeEeeeeeeeeccCCcccccccCcchhhHHHhHhh
Q psy7618 339 ENCRKKGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNS---KTGKALIHSKLNLVDLAGSECLQKSNATDIRLKECCEIN 415 (560)
Q Consensus 339 ~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~l~~~~~---~~~~~~~~s~L~~VDLAGSEr~~~s~~~g~r~~E~~~IN 415 (560)
+.+|..|.++|++++|.+|..|||||+||+|.|..... .+......|+|+|||||||||..++++.|.+++|+++||
T Consensus 280 l~LL~~G~~nR~tasT~mN~~SSRSHaIFtI~Ves~~k~~~dg~ss~r~SkLnLVDLAGSER~kkTga~G~RLkEA~~IN 359 (1320)
T PLN03188 280 TQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSVADGLSSFKTSRINLVDLAGSERQKLTGAAGDRLKEAGNIN 359 (1320)
T ss_pred HHHHHHHhccceeccCCCCCccCCCceeEEEEEEEeecccCCCCcceEEEEEEEEECCCchhccccCcccHHHHHHHHHh
Confidence 99999999999999999999999999999999987532 222345689999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhhhC-----CCCCcCCCCCchhhhhccccCCCceEEEEEeeCCCcccHHHHHHHHHHHHHhcccccccc
Q psy7618 416 LSLLAVNKVISSTVA-----GKTYIPYRDSLLTQLLQDSFGGNAKTLMIANIGPAASTYKETLVTLEYANRAKKIKNAPN 490 (560)
Q Consensus 416 ~SL~aL~~vI~al~~-----~~~~iPyRdSkLT~lLqdsLgGnskt~mI~~vsP~~~~~~ETl~TL~fa~rak~Ikn~p~ 490 (560)
+||++||+||.+|+. +..||||||||||+||||+|||||+|+|||||||...+++||++||+||+||++|+|.|.
T Consensus 360 KSLsaLGnVI~ALae~Sq~gk~~HIPYRDSKLTrLLQDSLGGNSKTvMIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpv 439 (1320)
T PLN03188 360 RSLSQLGNLINILAEISQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMVCAISPSQSCKSETFSTLRFAQRAKAIKNKAV 439 (1320)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCcCCCCcchHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHHHHHHHhhcCccce
Confidence 999999999999975 347999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhhhcHHHHHHHHHHHHHHHHh
Q psy7618 491 INFYREDRCHNEEKMREKYKKALEDLAQ 518 (560)
Q Consensus 491 ~n~~~~~~~~~~~~~~~~l~~~l~~l~~ 518 (560)
+|....+......++|.+|+++|..|..
T Consensus 440 vNe~~~~~vn~LrelIr~Lk~EL~rLK~ 467 (1320)
T PLN03188 440 VNEVMQDDVNFLREVIRQLRDELQRVKA 467 (1320)
T ss_pred eccchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 9987655433333388888888888765
No 6
>KOG0242|consensus
Probab=100.00 E-value=1.7e-82 Score=701.16 Aligned_cols=358 Identities=39% Similarity=0.574 Sum_probs=307.5
Q ss_pred CCCCeEEEEEeCCCCcchhccCCccEEEEcCCCceeEeecCCCCCCCCCCCCceeeeCCccccCCCcchhhhhccchHHH
Q psy7618 28 QDENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYGMQATQTEIYENSVRPMV 107 (560)
Q Consensus 28 ~~~~ikV~vRvRP~~~~e~~~~~~~~v~~~~~~~~v~i~~~~~~~~~~~~~~~~~F~FD~VF~~~a~Q~~vf~~~~~plv 107 (560)
...+|.|+|||||+++.+...+..+.+.+..+...+....... +.......|.||+||+++++|++||+..++|+|
T Consensus 4 ~~~~i~V~vrvRP~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~----~~~~~~~~y~FD~VF~~~~t~~~VYe~~tkpiv 79 (675)
T KOG0242|consen 4 TEEKILVSVRVRPLNEREDARGDRSDWHCINDTTLFKRVTKSL----PEKSKPEKYEFDRVFGEESTQEDVYERTTKPLL 79 (675)
T ss_pred ccceeEEEEEeCCCCccccccCCccceEecCCceeEeeccccc----cccccccceeeeeecCCCCCHHHHHHhccHHHH
Confidence 4568999999999998865555555555544333222211110 011116789999999999999999999999999
Q ss_pred HHHhcCCcEEEEEEcccCCCceEEeccCCCCcChHHHHHHHHHHHHhhhccCcEEEEeehhhhhhhhhhhccccCCCccc
Q psy7618 108 NHMLHGYNVTIFAYGQTGTGKTFTMEGSQMERGIMQNAFRQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLF 187 (560)
Q Consensus 108 ~~~l~G~N~~i~aYG~TgSGKTyTm~G~~~~~Giipr~l~~lF~~~~~~~~~~~~v~~s~~e~~~~~~~dll~~~~~~~~ 187 (560)
++++.|+|++|||||||||||||||.|...+|||||+++.+||+.+.+...+.|.|.
T Consensus 80 ~~~l~G~N~TVFAYG~TgSGKTyTM~G~~~~PGii~la~~dif~~I~~~~~r~f~v~----------------------- 136 (675)
T KOG0242|consen 80 LSVLEGFNATVFAYGQTGSGKTYTMSGSEDDPGIIPLAMKDIFEKIDKSGEREFSVR----------------------- 136 (675)
T ss_pred HHHhcCcccceeeecCCCCCCceEEeccCCCCCeeehHHHHHHHHHHhcCCceeEEE-----------------------
Confidence 999999999999999999999999999999999999999999999998776667666
Q ss_pred chhhhhhcccCCCCCCcccchhhhhhcccccceeeeeeeeehhhhhhhhcCCCCCcccccccccCCCCCCcccccchhHH
Q psy7618 188 DTKAKLNIYHGRQSNGTQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSVEE 267 (560)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 267 (560)
+||+|||||.|+|||+++.+.
T Consensus 137 ----------------------------------vSYlEIYNE~I~DLL~~~~~~------------------------- 157 (675)
T KOG0242|consen 137 ----------------------------------VSYLEIYNERIRDLLNPDGGD------------------------- 157 (675)
T ss_pred ----------------------------------EEEEEEeccccccccCCCCCC-------------------------
Confidence 888999999999999877421
Q ss_pred HHHhhhccccccccccccccccccceeeEeecchhhcccccCCCcccccCCcccceecCCeEEEcCCHHHHHHHHHHHHh
Q psy7618 268 IENCRKKGYKSRKTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSVEEIENCRKKGYK 347 (560)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~v~~s~lei~~~~~~dll~~~~~~~~~~~~~~~~~v~gL~~~~v~s~ee~~~ll~~g~~ 347 (560)
++|.+ +..++++|.||++..|.|+++++++|..|.+
T Consensus 158 ---------------------------L~irE-----------------D~~~gi~V~gL~e~~v~s~e~~~~ll~~g~~ 193 (675)
T KOG0242|consen 158 ---------------------------LRLRE-----------------DSEGGIVVPGLTEETVSSREELLELLQKGNK 193 (675)
T ss_pred ---------------------------ceEeE-----------------cCCCCEEecCCeeecCCCHHHHHHHHHHhhc
Confidence 34443 4556999999999999999999999999999
Q ss_pred hcccccccCCCCCCCcEEEEEEEEEEEeCCCCceeEeeeeeeeeccCCcccccccCcchhhHHHhHhhhhHHHHHHHHHh
Q psy7618 348 SRKTASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIHSKLNLVDLAGSECLQKSNATDIRLKECCEINLSLLAVNKVISS 427 (560)
Q Consensus 348 ~R~~~~t~~N~~SSRSH~If~i~l~~~~~~~~~~~~~s~L~~VDLAGSEr~~~s~~~g~r~~E~~~IN~SL~aL~~vI~a 427 (560)
+|+++.|.+|..|||||+||+|.+.......+ . ..++|+|||||||||+.++++.|.|++|+++||+||++||+||.+
T Consensus 194 ~R~~g~T~~N~~SSRSHaIl~i~i~s~~~~~~-~-~~s~L~lIDLAGSERas~T~~~G~RlkEG~~INrSLlaLgtVI~~ 271 (675)
T KOG0242|consen 194 NRTTGETNLNEQSSRSHAILRITVESRGREAS-S-RVSKLNLIDLAGSERASRTGNEGVRLKEGAHINRSLLALGTVINK 271 (675)
T ss_pred cCcccccccccccchhhheeeEEEEecccccc-c-hhheehhhhhhhhhhhhhhhccceeccccchhhHHHHHHHHHHHH
Confidence 99999999999999999999999998765544 2 678999999999999999999999999999999999999999999
Q ss_pred hhCCC--CCcCCCCCchhhhhccccCCCceEEEEEeeCCCcccHHHHHHHHHHHHHhcccccccccccccchhh-hcHH-
Q psy7618 428 TVAGK--TYIPYRDSLLTQLLQDSFGGNAKTLMIANIGPAASTYKETLVTLEYANRAKKIKNAPNINFYREDRC-HNEE- 503 (560)
Q Consensus 428 l~~~~--~~iPyRdSkLT~lLqdsLgGnskt~mI~~vsP~~~~~~ETl~TL~fa~rak~Ikn~p~~n~~~~~~~-~~~~- 503 (560)
|..++ .||||||||||||||++||||++|+|||||+|...+++||.+||+||+|||+|++++.+|....+.. ...+
T Consensus 272 Ls~~~~~~hipYRDSKLTRiLq~sLgGn~rt~~I~tisp~~~~~~eT~nTL~fAsrak~i~~~~~~n~~~~~~~~~~~~~ 351 (675)
T KOG0242|consen 272 LSEGKRPRHIPYRDSKLTRLLQDSLGGNARTAIIATISPSSSHYEETKNTLKFASRAKEITTKAQVNVILSDKALLKYLQ 351 (675)
T ss_pred HccccccCCCCccccHHHHhchhhcCCCccEEEEEEeCchhhHHHHHHHHHHHHHHhhhcccccccceecchhhhhHHHH
Confidence 99983 6899999999999999999999999999999999999999999999999999999999998765533 3333
Q ss_pred HHHHHHHHHHHHHH
Q psy7618 504 KMREKYKKALEDLA 517 (560)
Q Consensus 504 ~~~~~l~~~l~~l~ 517 (560)
+++.+|+.+++.+.
T Consensus 352 ~~i~~l~~e~~~~~ 365 (675)
T KOG0242|consen 352 REIAELEAELERLK 365 (675)
T ss_pred HHHHHHHHHHHhhc
Confidence 48888888887743
No 7
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=1.6e-81 Score=653.00 Aligned_cols=328 Identities=41% Similarity=0.621 Sum_probs=287.5
Q ss_pred CeEEEEEeCCCCcchhccCCccEEEEcCCCceeEeecCCCC----CCCCCCCCceeeeCCccccCCCcchhhhhccchHH
Q psy7618 31 NIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDR----LKPRQPGKARRFTFDAVYGMQATQTEIYENSVRPM 106 (560)
Q Consensus 31 ~ikV~vRvRP~~~~e~~~~~~~~v~~~~~~~~v~i~~~~~~----~~~~~~~~~~~F~FD~VF~~~a~Q~~vf~~~~~pl 106 (560)
+|+|+|||||+...|...+...+|.+.++ ..+.+.+.... .........+.|.||+||+++++|++||+.+++|+
T Consensus 1 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vf~~~~~pl 79 (338)
T cd01370 1 SLTVAVRVRPFNEKEKQEGTRRVVKVVDD-RMLVFDPKDEEDAFRNLRARRNKELKYSFDRVFDETSTQEEVYENTTKPL 79 (338)
T ss_pred CeEEEEEcCCCChhhhhcCCceEEEEcCC-CEEEEcCCcccccccchhcccCCceEEEeccccCCCCCHHHHHHHHHHHH
Confidence 58999999999999988888888888754 33333322210 01122345789999999999999999999999999
Q ss_pred HHHHhcCCcEEEEEEcccCCCceEEeccCCCCcChHHHHHHHHHHHHhhhc-cCcEEEEeehhhhhhhhhhhccccCCCc
Q psy7618 107 VNHMLHGYNVTIFAYGQTGTGKTFTMEGSQMERGIMQNAFRQIFDFKQKEK-RHKCIVECCYLELYQGKIRDLLNVSRPT 185 (560)
Q Consensus 107 v~~~l~G~N~~i~aYG~TgSGKTyTm~G~~~~~Giipr~l~~lF~~~~~~~-~~~~~v~~s~~e~~~~~~~dll~~~~~~ 185 (560)
|+++++|||+||||||||||||||||+|++.++|||||++++||+.++... ...|.
T Consensus 80 v~~~~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Giipr~~~~LF~~i~~~~~~~~~~----------------------- 136 (338)
T cd01370 80 VDGVLNGYNATVFAYGATGAGKTHTMLGTDSDPGLMVLTMKDLFDKIEERKDDKEFE----------------------- 136 (338)
T ss_pred HHHHHCCCCceEEeeCCCCCCCeEEEcCCCCCCchHHHHHHHHHHhhhhcccCceEE-----------------------
Confidence 999999999999999999999999999999999999999999999887654 33344
Q ss_pred ccchhhhhhcccCCCCCCcccchhhhhhcccccceeeeeeeeehhhhhhhhcCCCCCcccccccccCCCCCCcccccchh
Q psy7618 186 LFDTKAKLNIYHGRQSNGTQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSV 265 (560)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 265 (560)
|.+||+|||+|+++|||++... .
T Consensus 137 ----------------------------------v~vS~~EIyne~v~DLL~~~~~-------~---------------- 159 (338)
T cd01370 137 ----------------------------------VSLSYLEIYNETIRDLLSPSSG-------P---------------- 159 (338)
T ss_pred ----------------------------------EEEEEEEEECCEEEECCCCCCC-------C----------------
Confidence 4489999999999999975421 0
Q ss_pred HHHHHhhhccccccccccccccccccceeeEeecchhhcccccCCCcccccCCcccceecCCeEEEcCCHHHHHHHHHHH
Q psy7618 266 EEIENCRKKGYKSRKTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSVEEIENCRKKG 345 (560)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~v~~s~lei~~~~~~dll~~~~~~~~~~~~~~~~~v~gL~~~~v~s~ee~~~ll~~g 345 (560)
++|++ +..++++|.|++++.|.|++|++.+|..|
T Consensus 160 -----------------------------l~i~e-----------------d~~~~~~v~gl~~~~v~s~~e~~~~l~~g 193 (338)
T cd01370 160 -----------------------------LELRE-----------------DPNQGIVVAGLTEHQPKSAEEILELLMKG 193 (338)
T ss_pred -----------------------------ceEEE-----------------cCCCCEEeCCcEEEEeCCHHHHHHHHHHH
Confidence 44444 34468999999999999999999999999
Q ss_pred HhhcccccccCCCCCCCcEEEEEEEEEEEeCCC--CceeEeeeeeeeeccCCcccccccCcchhhHHHhHhhhhHHHHHH
Q psy7618 346 YKSRKTASTYFNDYSSRSHAIFIVTLKVLNSKT--GKALIHSKLNLVDLAGSECLQKSNATDIRLKECCEINLSLLAVNK 423 (560)
Q Consensus 346 ~~~R~~~~t~~N~~SSRSH~If~i~l~~~~~~~--~~~~~~s~L~~VDLAGSEr~~~s~~~g~r~~E~~~IN~SL~aL~~ 423 (560)
.++|++++|.+|..|||||+||+|++.+.+... +.....|+|+|||||||||..+++..|.+++|+.+||+||++|++
T Consensus 194 ~~~R~~~~t~~n~~SSRSH~i~~i~i~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~ 273 (338)
T cd01370 194 NRNRTQEPTEANATSSRSHAVLQITVRQKDRTASINQQVRIGKLSLIDLAGSERASATNNRGQRLKEGANINRSLLALGN 273 (338)
T ss_pred HhhcccccccccCccCcceEEEEEEEEEEecCCCCCCcEEEEEEEEEECCCCccccccCCCCccccccchhhHHHHHHHH
Confidence 999999999999999999999999999886542 445678999999999999999999999999999999999999999
Q ss_pred HHHhhhCCC---CCcCCCCCchhhhhccccCCCceEEEEEeeCCCcccHHHHHHHHHHHHHhccc
Q psy7618 424 VISSTVAGK---TYIPYRDSLLTQLLQDSFGGNAKTLMIANIGPAASTYKETLVTLEYANRAKKI 485 (560)
Q Consensus 424 vI~al~~~~---~~iPyRdSkLT~lLqdsLgGnskt~mI~~vsP~~~~~~ETl~TL~fa~rak~I 485 (560)
||.+|+.++ .||||||||||+||||+|||||+|+||+||||+..+++||++||+||+|||+|
T Consensus 274 vi~~L~~~~~~~~~ipyR~SkLT~lL~d~Lggn~~t~~I~~vsp~~~~~~eTl~TL~fa~ra~~I 338 (338)
T cd01370 274 CINALVDGKKKNKHIPYRDSKLTRLLKDSLGGNCKTVMIANISPSSSHYEETHNTLKYANRAKNI 338 (338)
T ss_pred HHHHHHhccCCCCcCCCcCCHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 999999987 89999999999999999999999999999999999999999999999999987
No 8
>KOG0240|consensus
Probab=100.00 E-value=1.4e-81 Score=650.38 Aligned_cols=332 Identities=38% Similarity=0.561 Sum_probs=293.9
Q ss_pred CCCCeEEEEEeCCCCcchhccCCccEEEEcCCCceeEeecCCCCCCCCCCCCceeeeCCccccCCCcchhhhhccchHHH
Q psy7618 28 QDENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYGMQATQTEIYENSVRPMV 107 (560)
Q Consensus 28 ~~~~ikV~vRvRP~~~~e~~~~~~~~v~~~~~~~~v~i~~~~~~~~~~~~~~~~~F~FD~VF~~~a~Q~~vf~~~~~plv 107 (560)
...+|+|+||+||++..|...+...+....+...++.+... .....|.||+||+|+++|++||+.++.|+|
T Consensus 5 ~~~~IkV~cR~rP~n~~E~~~~~~~i~~~~~~~~~v~~~~~---------~~~~~y~FDrVF~pnatQe~Vy~~~a~~Iv 75 (607)
T KOG0240|consen 5 AECSIKVVCRFRPLNGLENNLGSKFIDCFENGENTVVLETT---------KETKTYVFDRVFSPNATQEDVYEFAAKPIV 75 (607)
T ss_pred CCCceEEEEEeecCCchhhhcCCcCccCCCCCcceEEEecc---------cccccceeeeecCCCccHHHHHHHHHHHHH
Confidence 46789999999999999987777666555554555555432 223789999999999999999999999999
Q ss_pred HHHhcCCcEEEEEEcccCCCceEEeccCCC---CcChHHHHHHHHHHHHhhhc-cCcEEEEeehhhhhhhhhhhccccCC
Q psy7618 108 NHMLHGYNVTIFAYGQTGTGKTFTMEGSQM---ERGIMQNAFRQIFDFKQKEK-RHKCIVECCYLELYQGKIRDLLNVSR 183 (560)
Q Consensus 108 ~~~l~G~N~~i~aYG~TgSGKTyTm~G~~~---~~Giipr~l~~lF~~~~~~~-~~~~~v~~s~~e~~~~~~~dll~~~~ 183 (560)
++||.|||+||||||||||||||||.|... ..||+||++++||+.+.... .-.|.|+
T Consensus 76 ~dVL~GYNGTvfaYGqT~sGKTytm~G~~~d~~~~GIipRi~~diF~~Iys~~~n~efhVk------------------- 136 (607)
T KOG0240|consen 76 DDVLLGYNGTVFAYGQTGSGKTYTMEGIGHDPEEMGIIPRILNDIFDHIYSMEENLEFHVK------------------- 136 (607)
T ss_pred HHHhcccceeEEEecCCCCCcceeecccCCChhhcCcHHHHHHHHHHHHhcCcccceEEEE-------------------
Confidence 999999999999999999999999999766 56999999999999987654 3345544
Q ss_pred CcccchhhhhhcccCCCCCCcccchhhhhhcccccceeeeeeeeehhhhhhhhcCCCCCcccccccccCCCCCCcccccc
Q psy7618 184 PTLFDTKAKLNIYHGRQSNGTQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQ 263 (560)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (560)
+||+|||+|+++|||++....
T Consensus 137 --------------------------------------Vsy~EIYmEKi~DLL~~~k~n--------------------- 157 (607)
T KOG0240|consen 137 --------------------------------------VSYFEIYMEKIRDLLDPEKTN--------------------- 157 (607)
T ss_pred --------------------------------------EEeehhhhhHHHHHhCcccCC---------------------
Confidence 888889999999998766421
Q ss_pred hhHHHHHhhhccccccccccccccccccceeeEeecchhhcccccCCCcccccCCcccceecCCeEEEcCCHHHHHHHHH
Q psy7618 264 SVEEIENCRKKGYKSRKTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSVEEIENCRK 343 (560)
Q Consensus 264 s~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~lei~~~~~~dll~~~~~~~~~~~~~~~~~v~gL~~~~v~s~ee~~~ll~ 343 (560)
+.|. .+...+++|+|+++..|.+++++++++.
T Consensus 158 -------------------------------lsvh-----------------eDK~~v~~vkG~t~~~v~s~d~v~~~i~ 189 (607)
T KOG0240|consen 158 -------------------------------LSVH-----------------EDKNRVPYVKGVTERFVSSPDEVLDVID 189 (607)
T ss_pred -------------------------------ceee-----------------cccCCCceecCceeEEecCHHHHHHHHh
Confidence 2222 2345588999999999999999999999
Q ss_pred HHHhhcccccccCCCCCCCcEEEEEEEEEEEeCCCCceeEeeeeeeeeccCCcccccccCcchhhHHHhHhhhhHHHHHH
Q psy7618 344 KGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIHSKLNLVDLAGSECLQKSNATDIRLKECCEINLSLLAVNK 423 (560)
Q Consensus 344 ~g~~~R~~~~t~~N~~SSRSH~If~i~l~~~~~~~~~~~~~s~L~~VDLAGSEr~~~s~~~g~r~~E~~~IN~SL~aL~~ 423 (560)
.|..+|+++.|.||..|||||+||+|+|++.+..... ...|+|+||||||||+++++|+.|.-+.|+++||+||+|||+
T Consensus 190 ~g~~nr~va~t~mn~~sSRSHsIF~i~VkQ~n~e~~~-~~~gkLyLVDLaGSEkvsKtga~g~vleEaK~INkSLsaLgn 268 (607)
T KOG0240|consen 190 EGKSNRHVAVTNMNEHSSRSHSIFLIHVKQENVEDKR-KLSGKLYLVDLAGSEKVSKTGAEGAVLEEAKNINKSLSALGN 268 (607)
T ss_pred cccccchhhhccccccccccceEEEEEEEeccccchh-hccccEEEEEcccccccCCCCccchhHHHHhhhhhhHHHHHH
Confidence 9999999999999999999999999999998777664 458999999999999999999999999999999999999999
Q ss_pred HHHhhhCC-CCCcCCCCCchhhhhccccCCCceEEEEEeeCCCcccHHHHHHHHHHHHHhccccccccccccc
Q psy7618 424 VISSTVAG-KTYIPYRDSLLTQLLQDSFGGNAKTLMIANIGPAASTYKETLVTLEYANRAKKIKNAPNINFYR 495 (560)
Q Consensus 424 vI~al~~~-~~~iPyRdSkLT~lLqdsLgGnskt~mI~~vsP~~~~~~ETl~TL~fa~rak~Ikn~p~~n~~~ 495 (560)
||++|+.+ +.|||||||||||||||+|||||||.+|+|++|+.-+..||.+||+|+.|||.|+|.+.+|...
T Consensus 269 vI~aLa~g~~shipYRDSKLTRILqdSLGGNsRTtlIi~csPss~n~~ET~STl~fg~rak~ikN~v~~n~e~ 341 (607)
T KOG0240|consen 269 VINALAEGPKSHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSLNEAETKSTLRFGNRAKTIKNTVWVNLEL 341 (607)
T ss_pred HHHHHhcCCCCCCcchhhHHHHHHHHHhCCCcceEEEEecCCccccccccccchhhccccccccchhhhhhHh
Confidence 99999998 6899999999999999999999999999999999999999999999999999999999999644
No 9
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=9e-81 Score=647.06 Aligned_cols=324 Identities=39% Similarity=0.590 Sum_probs=275.7
Q ss_pred CCeEEEEEeCCCCcchhccCCccEEEEcCCCceeEeecCCCCCCCCCCCCceeeeCCccccCCCcchhhhhccchHHHHH
Q psy7618 30 ENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYGMQATQTEIYENSVRPMVNH 109 (560)
Q Consensus 30 ~~ikV~vRvRP~~~~e~~~~~~~~v~~~~~~~~v~i~~~~~~~~~~~~~~~~~F~FD~VF~~~a~Q~~vf~~~~~plv~~ 109 (560)
.+|+|+|||||+...|...+...++....++. +.+.. ...+.|.||+||+++++|++||+.++.|+|++
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~-~~~~~----------~~~~~f~FD~vf~~~~~q~~vy~~~~~p~v~~ 69 (337)
T cd01373 1 PAVKVVVRIRPPNEIEADGGQGQCLKKLSSDT-LVWHS----------HPPRMFTFDHVADSNTNQEDVFQSVGKPLVED 69 (337)
T ss_pred CCeEEEEEcCcCChhhcccCCCeEEEEcCCCc-EEeeC----------CCCcEEeCCeEeCCCCCHHHHHHHHHHHHHHH
Confidence 47999999999999887655566666554333 22221 12568999999999999999999999999999
Q ss_pred HhcCCcEEEEEEcccCCCceEEeccCCC--------CcChHHHHHHHHHHHHhhhccCcEEEEeehhhhhhhhhhhcccc
Q psy7618 110 MLHGYNVTIFAYGQTGTGKTFTMEGSQM--------ERGIMQNAFRQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNV 181 (560)
Q Consensus 110 ~l~G~N~~i~aYG~TgSGKTyTm~G~~~--------~~Giipr~l~~lF~~~~~~~~~~~~v~~s~~e~~~~~~~dll~~ 181 (560)
+++|||+||||||||||||||||+|+.. ++|||||++++||+.++......
T Consensus 70 ~~~G~n~ti~aYGqTGSGKTyTm~G~~~~~~~~~~~~~Giipr~~~~Lf~~i~~~~~~~--------------------- 128 (337)
T cd01373 70 CLSGYNGSIFAYGQTGSGKTYTMMGPSSSDDESPHGLQGVIPRIFEYLFSLIQREEEKR--------------------- 128 (337)
T ss_pred HhCCCceeEEEeCCCCCCceEEecCCCCccccccccCCCHHHHHHHHHHHHHHhhhhhc---------------------
Confidence 9999999999999999999999999763 68999999999999876542100
Q ss_pred CCCcccchhhhhhcccCCCCCCcccchhhhhhcccccceeeeeeeeehhhhhhhhcCCCCCcccccccccCCCCCCcccc
Q psy7618 182 SRPTLFDTKAKLNIYHGRQSNGTQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVT 261 (560)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (560)
.....+.|.+||+|||+|+|+|||++....
T Consensus 129 -------------------------------~~~~~~~v~~S~~EIyne~v~DLL~~~~~~------------------- 158 (337)
T cd01373 129 -------------------------------GDGLKFLCKCSFLEIYNEQITDLLDPTSRN------------------- 158 (337)
T ss_pred -------------------------------ccCceEEEEEEEEeecCCEeeeCCCCCCCC-------------------
Confidence 001123456899999999999999654210
Q ss_pred cchhHHHHHhhhccccccccccccccccccceeeEeecchhhcccccCCCcccccCCcccceecCCeEEEcCCHHHHHHH
Q psy7618 262 CQSVEEIENCRKKGYKSRKTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSVEEIENC 341 (560)
Q Consensus 262 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~lei~~~~~~dll~~~~~~~~~~~~~~~~~v~gL~~~~v~s~ee~~~l 341 (560)
+.|.+ +...+++|+||+++.|.|++|++++
T Consensus 159 ---------------------------------l~i~e-----------------~~~~~~~v~gl~~~~v~s~~e~~~l 188 (337)
T cd01373 159 ---------------------------------LKIRE-----------------DIKKGVYVENLTEEYVSSYEDVYQV 188 (337)
T ss_pred ---------------------------------ceEEE-----------------CCCCCEEeCCCEEEEeCCHHHHHHH
Confidence 23332 3445899999999999999999999
Q ss_pred HHHHHhhcccccccCCCCCCCcEEEEEEEEEEEeCCCC-ceeEeeeeeeeeccCCcccccccCcchhhHHHhHhhhhHHH
Q psy7618 342 RKKGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSKTG-KALIHSKLNLVDLAGSECLQKSNATDIRLKECCEINLSLLA 420 (560)
Q Consensus 342 l~~g~~~R~~~~t~~N~~SSRSH~If~i~l~~~~~~~~-~~~~~s~L~~VDLAGSEr~~~s~~~g~r~~E~~~IN~SL~a 420 (560)
|..|.++|++++|.+|..|||||+||+|++.......+ .....|+|+|||||||||..++++.|.+++|+++||+||++
T Consensus 189 l~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~~~~~s~l~~VDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~ 268 (337)
T cd01373 189 LLKGLSNRKVAATSMNSESSRSHAVFTCTIESWEKKASSTNIRTSRLNLVDLAGSERQKDDGAEGVRLKEAKNINKSLST 268 (337)
T ss_pred HHHHHhccCcccCcCCCCCCCccEEEEEEEEEeecCCCCCcEEEEEEEEEECCCCCcccccCCccHhhhhhccccHHHHH
Confidence 99999999999999999999999999999987654433 24567999999999999999999999999999999999999
Q ss_pred HHHHHHhhhC----CCCCcCCCCCchhhhhccccCCCceEEEEEeeCCCcccHHHHHHHHHHHHHhccc
Q psy7618 421 VNKVISSTVA----GKTYIPYRDSLLTQLLQDSFGGNAKTLMIANIGPAASTYKETLVTLEYANRAKKI 485 (560)
Q Consensus 421 L~~vI~al~~----~~~~iPyRdSkLT~lLqdsLgGnskt~mI~~vsP~~~~~~ETl~TL~fa~rak~I 485 (560)
|++||.+|+. +..||||||||||+||||+|||||+|+||+||||+..+++||++||+||+|||+|
T Consensus 269 L~~vi~aL~~~~~~~~~~ipyR~SkLT~lL~dsLggns~t~~I~~vsP~~~~~~eTl~TL~fa~rak~I 337 (337)
T cd01373 269 LGHVIMALVDVAHGKQRHVPYRDSKLTFLLRDSLGGNAKTTIIANVSPSSKCFGETLSTLKFAQRAKLI 337 (337)
T ss_pred HHHHHHHHHhhccCCCCccCCcccHHHHHHHHhcCCCceEEEEEEECCCcccHHHHHHHHHHHHHhhcC
Confidence 9999999974 3589999999999999999999999999999999999999999999999999987
No 10
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=1.2e-79 Score=640.16 Aligned_cols=328 Identities=34% Similarity=0.520 Sum_probs=284.0
Q ss_pred CCeEEEEEeCCCCcchhccCCccEEEEcCCCceeEeecCCCCCC----CCCCCCceeeeCCccccCCCcchhhhhccchH
Q psy7618 30 ENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLK----PRQPGKARRFTFDAVYGMQATQTEIYENSVRP 105 (560)
Q Consensus 30 ~~ikV~vRvRP~~~~e~~~~~~~~v~~~~~~~~v~i~~~~~~~~----~~~~~~~~~F~FD~VF~~~a~Q~~vf~~~~~p 105 (560)
++|+|||||||+...|.......+|.+.+ +..+.+..+..... .......+.|.||+||+++++|++||+.++.|
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~v~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~tq~~vy~~~~~p 79 (345)
T cd01368 1 DPVKVYLRVRPLSKDELESEDEGCIEVIN-STTIQLHPPKGSAARKSERNGGQKETKFSFSKVFGPNTTQKEFFEGTALP 79 (345)
T ss_pred CCEEEEEEeCcCCchhhccCCCceEEEcC-CCEEEEeCCccccccccccccCCCceEeecCeEECCCCCHHHHHHHHHHH
Confidence 47999999999999998777777887754 45666666543221 11234578999999999999999999999999
Q ss_pred HHHHHhcCCcEEEEEEcccCCCceEEeccCCCCcChHHHHHHHHHHHHhhhccCcEEEEeehhhhhhhhhhhccccCCCc
Q psy7618 106 MVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQMERGIMQNAFRQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPT 185 (560)
Q Consensus 106 lv~~~l~G~N~~i~aYG~TgSGKTyTm~G~~~~~Giipr~l~~lF~~~~~~~~~~~~v~~s~~e~~~~~~~dll~~~~~~ 185 (560)
+|+++++|+|+||||||||||||||||+|++.++|||||++++||+.+.. |.
T Consensus 80 ~v~~~l~G~n~ti~aYGqtGSGKTyTm~G~~~~~Gli~r~~~~lF~~~~~-----~~----------------------- 131 (345)
T cd01368 80 LVQDLLKGKNSLLFTYGVTNSGKTYTMQGSPGDGGILPRSLDVIFNSIGG-----YS----------------------- 131 (345)
T ss_pred HHHHHhCCCceEEEEeCCCCCCCeEEecCCCCCCchHHHHHHHHHHHHHh-----ee-----------------------
Confidence 99999999999999999999999999999999999999999999997754 33
Q ss_pred ccchhhhhhcccCCCCCCcccchhhhhhcccccceeeeeeeeehhhhhhhhcCCCCCcccccccccCCCCCCcccccchh
Q psy7618 186 LFDTKAKLNIYHGRQSNGTQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSV 265 (560)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 265 (560)
|.+||+|||+|+|+|||++...... ..
T Consensus 132 ----------------------------------v~~S~~EIyne~v~DLL~~~~~~~~---~~---------------- 158 (345)
T cd01368 132 ----------------------------------VFVSYVEIYNNYIYDLLEDSPSSTK---KR---------------- 158 (345)
T ss_pred ----------------------------------EEEEEEEEeCCEeEeCCCCcccccc---CC----------------
Confidence 4489999999999999976542100 00
Q ss_pred HHHHHhhhccccccccccccccccccceeeEeecchhhcccccCCCcccccCCcccceecCCeEEEcCCHHHHHHHHHHH
Q psy7618 266 EEIENCRKKGYKSRKTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSVEEIENCRKKG 345 (560)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~v~~s~lei~~~~~~dll~~~~~~~~~~~~~~~~~v~gL~~~~v~s~ee~~~ll~~g 345 (560)
..++|++ +..++++|+||+++.|.|++|++.+|..|
T Consensus 159 ---------------------------~~l~i~e-----------------d~~~~~~i~gl~~~~v~s~~e~~~~l~~g 194 (345)
T cd01368 159 ---------------------------QSLRLRE-----------------DHNGNMYVAGLTEVEVSSTEEAREVFKRG 194 (345)
T ss_pred ---------------------------CceEEEE-----------------CCCCCEEecCCEEEEeCCHHHHHHHHHHh
Confidence 0033333 44568999999999999999999999999
Q ss_pred HhhcccccccCCCCCCCcEEEEEEEEEEEeCCC-------CceeEeeeeeeeeccCCcccccccCcchhhHHHhHhhhhH
Q psy7618 346 YKSRKTASTYFNDYSSRSHAIFIVTLKVLNSKT-------GKALIHSKLNLVDLAGSECLQKSNATDIRLKECCEINLSL 418 (560)
Q Consensus 346 ~~~R~~~~t~~N~~SSRSH~If~i~l~~~~~~~-------~~~~~~s~L~~VDLAGSEr~~~s~~~g~r~~E~~~IN~SL 418 (560)
.++|.+++|.+|..|||||+||+|++.+..... ......|+|+|||||||||..++++.|.+++|+.+||+||
T Consensus 195 ~~~R~~~~t~~N~~SSRSH~i~~i~v~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL 274 (345)
T cd01368 195 QKNRRVAGTKLNRESSRSHSVFTIKLVQAPGDSDGDVDQDKDQITVSQLSLVDLAGSERTSRTQNTGERLKEAGNINTSL 274 (345)
T ss_pred hccceeccccCcCCCCCceEEEEEEEEEeccCcccccccCCCceEEEEEEEEecccccccccccccchhhhhhhhhhHHH
Confidence 999999999999999999999999998775432 2456689999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhC------CCCCcCCCCCchhhhhccccCCCceEEEEEeeCCCcccHHHHHHHHHHHHHhc
Q psy7618 419 LAVNKVISSTVA------GKTYIPYRDSLLTQLLQDSFGGNAKTLMIANIGPAASTYKETLVTLEYANRAK 483 (560)
Q Consensus 419 ~aL~~vI~al~~------~~~~iPyRdSkLT~lLqdsLgGnskt~mI~~vsP~~~~~~ETl~TL~fa~rak 483 (560)
++|++||.+|.. ...||||||||||+||||+|||||+|+||+||||+..+++||++||+||++|+
T Consensus 275 ~aL~~vi~aL~~~~~~~~~~~~iPyR~SkLT~lL~~~l~g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~a~ 345 (345)
T cd01368 275 MTLGKCIEVLRENQLSGSTNKMVPYRDSKLTHLFQNYFDGEGKARMIVNVNPCASDYDETLHVMKFSAIAQ 345 (345)
T ss_pred HHHHHHHHHHHhhhcccCCCCcCCCcCCHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 999999999987 46899999999999999999999999999999999999999999999999985
No 11
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=6.5e-79 Score=638.44 Aligned_cols=338 Identities=41% Similarity=0.612 Sum_probs=294.3
Q ss_pred CCeEEEEEeCCCCcchhccCCccEEEEcCCCceeEeecCCCCCCCCCCCCceeeeCCccccCC-------Ccchhhhhcc
Q psy7618 30 ENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYGMQ-------ATQTEIYENS 102 (560)
Q Consensus 30 ~~ikV~vRvRP~~~~e~~~~~~~~v~~~~~~~~v~i~~~~~~~~~~~~~~~~~F~FD~VF~~~-------a~Q~~vf~~~ 102 (560)
++|+|+||+||++..|...+...++.+.+ ..+.+.++... .........|.||+||+++ ++|++||+.+
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~--~~v~v~~~~~~--~~~~~~~~~f~FD~vf~~~~~~~~~~~tq~~vf~~~ 76 (356)
T cd01365 1 ANVKVAVRVRPFNSREKNRGSKCIVQMPG--KVTTLKNPKAA--DATRKKPKSFSFDHSYWSHDSEDPHYASQEDVFEDL 76 (356)
T ss_pred CCEEEEEEeCcCChhhhccCCceEEEECC--CEEEEEcCCcc--cccccCceEEECCeEecccCCCCCCCCCHHHHHHHH
Confidence 47999999999999998888888888876 56666655421 1223457889999999999 9999999999
Q ss_pred chHHHHHHhcCCcEEEEEEcccCCCceEEeccCCCCcChHHHHHHHHHHHHhhhccCcEEEEeehhhhhhhhhhhccccC
Q psy7618 103 VRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQMERGIMQNAFRQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVS 182 (560)
Q Consensus 103 ~~plv~~~l~G~N~~i~aYG~TgSGKTyTm~G~~~~~Giipr~l~~lF~~~~~~~~~~~~v~~s~~e~~~~~~~dll~~~ 182 (560)
+.|+|+++++|+|+||||||||||||||||+|+..++|||||++++||+.++.....
T Consensus 77 ~~p~v~~~l~G~n~~i~ayGqtGSGKT~Tm~G~~~~~Gli~r~~~~Lf~~~~~~~~~----------------------- 133 (356)
T cd01365 77 GRELLDHAFEGYNVCLFAYGQTGSGKSYTMMGYKEEKGIIPRLCEELFQRIESKKEQ----------------------- 133 (356)
T ss_pred HHHHHHHHhCCCceEEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhcccc-----------------------
Confidence 999999999999999999999999999999999999999999999999988765421
Q ss_pred CCcccchhhhhhcccCCCCCCcccchhhhhhcccccceeeeeeeeehhhhhhhhcCCCCCcccccccccCCCCCCccccc
Q psy7618 183 RPTLFDTKAKLNIYHGRQSNGTQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTC 262 (560)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (560)
...+.|.+||+|||+|+++|||++.... ..
T Consensus 134 --------------------------------~~~~~v~~S~~EIy~e~v~DLL~~~~~~----~~-------------- 163 (356)
T cd01365 134 --------------------------------NLSYEVEVSYMEIYNEKVRDLLNPKKKN----KG-------------- 163 (356)
T ss_pred --------------------------------CceEEEEEEEEEEECCeeeeCCCCCccC----Cc--------------
Confidence 1123355999999999999999765310 00
Q ss_pred chhHHHHHhhhccccccccccccccccccceeeEeecchhhcccccCCCcccccCCcccceecCCeEEEcCCHHHHHHHH
Q psy7618 263 QSVEEIENCRKKGYKSRKTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSVEEIENCR 342 (560)
Q Consensus 263 ~s~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~lei~~~~~~dll~~~~~~~~~~~~~~~~~v~gL~~~~v~s~ee~~~ll 342 (560)
.++|++ +...+++|+|++++.|.|++|++.++
T Consensus 164 -------------------------------~l~i~~-----------------~~~~g~~v~gl~~~~v~s~~e~~~~l 195 (356)
T cd01365 164 -------------------------------NLKVRE-----------------HPVLGPYVEDLSKVAVTSYEDIQNLL 195 (356)
T ss_pred -------------------------------CceEEE-----------------CCCCCEEeCCCEEEEeCCHHHHHHHH
Confidence 033333 33458899999999999999999999
Q ss_pred HHHHhhcccccccCCCCCCCcEEEEEEEEEEEeCC---CCceeEeeeeeeeeccCCcccccccCcchhhHHHhHhhhhHH
Q psy7618 343 KKGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSK---TGKALIHSKLNLVDLAGSECLQKSNATDIRLKECCEINLSLL 419 (560)
Q Consensus 343 ~~g~~~R~~~~t~~N~~SSRSH~If~i~l~~~~~~---~~~~~~~s~L~~VDLAGSEr~~~s~~~g~r~~E~~~IN~SL~ 419 (560)
..|.++|.+++|.+|..|||||+||+|++.+.... .......|+|+|||||||||..+++..|.+++|+..||+||+
T Consensus 196 ~~g~~~R~~~~t~~n~~SSRSH~i~~l~v~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~E~~~IN~SL~ 275 (356)
T cd01365 196 EEGNKSRTTASTNMNDTSSRSHAVFTIVLTQKKLDKETDLTTEKVSKISLVDLAGSERASSTGAEGDRLKEGSNINKSLT 275 (356)
T ss_pred HHHHhcccccCCCCCCCcCCceEEEEEEEEEEecccCCCCCceEEEEEEeeecccccccccccccchhhHHHHHHhHHHH
Confidence 99999999999999999999999999999887544 244567899999999999999999999999999999999999
Q ss_pred HHHHHHHhhhCC--------CCCcCCCCCchhhhhccccCCCceEEEEEeeCCCcccHHHHHHHHHHHHHhccccccccc
Q psy7618 420 AVNKVISSTVAG--------KTYIPYRDSLLTQLLQDSFGGNAKTLMIANIGPAASTYKETLVTLEYANRAKKIKNAPNI 491 (560)
Q Consensus 420 aL~~vI~al~~~--------~~~iPyRdSkLT~lLqdsLgGnskt~mI~~vsP~~~~~~ETl~TL~fa~rak~Ikn~p~~ 491 (560)
+|++||.+|... +.||||||||||+||+++||||++|+||+||+|...+++||++||+||+++++|+|.|.+
T Consensus 276 aL~~vi~~l~~~~~~~~~~~~~~ipyR~SkLT~lL~~~lgg~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~i~~~~~~ 355 (356)
T cd01365 276 TLGKVISALADNSSAKSKKKSSFIPYRDSVLTWLLKENLGGNSKTAMIATISPADINYEETLSTLRYADRAKKIVNVAVV 355 (356)
T ss_pred HHHHHHHHHHhcccccccCCCCcCCCcCcHHHHHHHHhcCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCcccc
Confidence 999999999864 489999999999999999999999999999999999999999999999999999999987
Q ss_pred c
Q psy7618 492 N 492 (560)
Q Consensus 492 n 492 (560)
|
T Consensus 356 ~ 356 (356)
T cd01365 356 N 356 (356)
T ss_pred C
Confidence 6
No 12
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=7.6e-79 Score=629.21 Aligned_cols=321 Identities=37% Similarity=0.530 Sum_probs=284.5
Q ss_pred CCeEEEEEeCCCCcchhccCCccEEEEcCCCceeEeecCCCCCCCCCCCCceeeeCCccccCCCcchhhhhccchHHHHH
Q psy7618 30 ENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYGMQATQTEIYENSVRPMVNH 109 (560)
Q Consensus 30 ~~ikV~vRvRP~~~~e~~~~~~~~v~~~~~~~~v~i~~~~~~~~~~~~~~~~~F~FD~VF~~~a~Q~~vf~~~~~plv~~ 109 (560)
.+|+|+|||||+.+.|...+..+++.+.+. .++.+..+............+.|.||+||+++++|++||+.+++|+|++
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vf~~~~~plv~~ 79 (322)
T cd01367 1 MKITVAVRKRPLNDKELSKGETDVVSCESN-PTVTVHEPKTKVDLTKYIEKHTFRFDYVFDEAVTNEEVYRSTVKPLIPH 79 (322)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEECCC-CEEEEecCccccccccccCCceEecceEECCCCCHHHHHHHHHHHHHHH
Confidence 379999999999999987777788888765 5777776654443333344689999999999999999999999999999
Q ss_pred HhcCCcEEEEEEcccCCCceEEeccCCCCcChHHHHHHHHHHHHhhhccCcEEEEeehhhhhhhhhhhccccCCCcccch
Q psy7618 110 MLHGYNVTIFAYGQTGTGKTFTMEGSQMERGIMQNAFRQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDT 189 (560)
Q Consensus 110 ~l~G~N~~i~aYG~TgSGKTyTm~G~~~~~Giipr~l~~lF~~~~~~~~~~~~v~~s~~e~~~~~~~dll~~~~~~~~~~ 189 (560)
+++|+|+||||||||||||||||+|+..++||+||++++||+.++... ..|
T Consensus 80 ~~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Glipr~~~~lf~~~~~~~-~~~---------------------------- 130 (322)
T cd01367 80 VFEGGVATCFAYGQTGSGKTYTMLGDENQEGLYALAARDIFRLLAQPN-DDL---------------------------- 130 (322)
T ss_pred HhCCCceEEEeccCCCCCCceEecCcCCcCccHHHHHHHHHHHHhccc-ccc----------------------------
Confidence 999999999999999999999999999999999999999999876543 223
Q ss_pred hhhhhcccCCCCCCcccchhhhhhcccccceeeeeeeeehhhhhhhhcCCCCCcccccccccCCCCCCcccccchhHHHH
Q psy7618 190 KAKLNIYHGRQSNGTQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSVEEIE 269 (560)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 269 (560)
.|.+||+|||+|+++|||++...
T Consensus 131 -----------------------------~v~~S~~EIy~e~v~DLL~~~~~---------------------------- 153 (322)
T cd01367 131 -----------------------------GVTVSFFEIYGGKLFDLLNDRKR---------------------------- 153 (322)
T ss_pred -----------------------------EEEEEEEeeecCchhhhccCccc----------------------------
Confidence 35599999999999999975321
Q ss_pred HhhhccccccccccccccccccceeeEeecchhhcccccCCCcccccCCcccceecCCeEEEcCCHHHHHHHHHHHHhhc
Q psy7618 270 NCRKKGYKSRKTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSVEEIENCRKKGYKSR 349 (560)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~v~~s~lei~~~~~~dll~~~~~~~~~~~~~~~~~v~gL~~~~v~s~ee~~~ll~~g~~~R 349 (560)
+.|++ +..++++|+|++++.|.|++|++++|..|.++|
T Consensus 154 -------------------------l~i~~-----------------~~~~~~~v~~l~~~~v~s~~e~~~~l~~g~~~R 191 (322)
T cd01367 154 -------------------------LSVLE-----------------DGKGNVQIVGLTEKPVTSVDELLELIESGNSLR 191 (322)
T ss_pred -------------------------eeEEE-----------------cCCCCEEeCCCEEEEeCCHHHHHHHHHHHhccc
Confidence 33333 345689999999999999999999999999999
Q ss_pred ccccccCCCCCCCcEEEEEEEEEEEeCCCCceeEeeeeeeeeccCCccccccc-CcchhhHHHhHhhhhHHHHHHHHHhh
Q psy7618 350 KTASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIHSKLNLVDLAGSECLQKSN-ATDIRLKECCEINLSLLAVNKVISST 428 (560)
Q Consensus 350 ~~~~t~~N~~SSRSH~If~i~l~~~~~~~~~~~~~s~L~~VDLAGSEr~~~s~-~~g~r~~E~~~IN~SL~aL~~vI~al 428 (560)
++++|.+|..|||||+||+|++..... ....|+|+|||||||||...++ ..+.+++|+.+||+||++|++||.+|
T Consensus 192 ~~~~t~~n~~SSRSH~i~~i~v~~~~~----~~~~s~l~~vDLAGsE~~~~~~~~~~~~~~e~~~IN~SL~~L~~vi~al 267 (322)
T cd01367 192 TTGSTGANDQSSRSHAILQIILKNKKL----NKLLGKLSFIDLAGSERGADTSEHDRQTRKEGAEINKSLLALKECIRAL 267 (322)
T ss_pred ccccCcCCCCcccceEEEEEEEEEecC----CeeEEEEEEeecCCccccccccccchhhHHhHhHHhHHHHHHHHHHHHH
Confidence 999999999999999999999987654 3457999999999999998765 56899999999999999999999999
Q ss_pred hCCCCCcCCCCCchhhhhccccCCCceEEEEEeeCCCcccHHHHHHHHHHHHHhc
Q psy7618 429 VAGKTYIPYRDSLLTQLLQDSFGGNAKTLMIANIGPAASTYKETLVTLEYANRAK 483 (560)
Q Consensus 429 ~~~~~~iPyRdSkLT~lLqdsLgGnskt~mI~~vsP~~~~~~ETl~TL~fa~rak 483 (560)
..++.||||||||||+||||+|||||+|+||+||||+..+++||++||+||+|+|
T Consensus 268 ~~~~~~iPyRdSkLT~lL~~~L~g~~~t~~I~~vsp~~~~~~eTl~tL~fa~r~k 322 (322)
T cd01367 268 ASNKAHVPFRGSKLTQVLRDSFIGNSKTVMIATISPSASSCEHTLNTLRYADRVK 322 (322)
T ss_pred hcCCCcCCCccCHHHHHHHHhhCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999999999999986
No 13
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=4.3e-78 Score=631.96 Aligned_cols=337 Identities=43% Similarity=0.663 Sum_probs=295.3
Q ss_pred CCeEEEEEeCCCCcchhccCCccEEEEcCCCceeEeecCCCCCCCCCCCCceeeeCCccccCCCcchhhhhccchHHHHH
Q psy7618 30 ENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYGMQATQTEIYENSVRPMVNH 109 (560)
Q Consensus 30 ~~ikV~vRvRP~~~~e~~~~~~~~v~~~~~~~~v~i~~~~~~~~~~~~~~~~~F~FD~VF~~~a~Q~~vf~~~~~plv~~ 109 (560)
.+|+|+||+||+...|...+...++.+......+.+.++.. .....+.|.||+||+++++|++||+.++.|+|++
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~i~~~~~~~~i~~~~~~~-----~~~~~~~f~Fd~vf~~~~~q~~vy~~~~~plv~~ 76 (352)
T cd01364 2 SNIQVVVRCRPRNSRERKEKSSVVVEVSGSSKEIIVSTGGA-----DKQSTKTYTFDKVFGPEADQIEVYSQVVSPILDE 76 (352)
T ss_pred CCEEEEEEcCcCCccccccCCCeEEEEcCCCcEEEEcCCCc-----ccccceeEeccccCCCCCCHHHHHHHHHHHHHHH
Confidence 58999999999999998888888898887767777655321 2345678999999999999999999999999999
Q ss_pred HhcCCcEEEEEEcccCCCceEEeccCCC-----------CcChHHHHHHHHHHHHhhhccCcEEEEeehhhhhhhhhhhc
Q psy7618 110 MLHGYNVTIFAYGQTGTGKTFTMEGSQM-----------ERGIMQNAFRQIFDFKQKEKRHKCIVECCYLELYQGKIRDL 178 (560)
Q Consensus 110 ~l~G~N~~i~aYG~TgSGKTyTm~G~~~-----------~~Giipr~l~~lF~~~~~~~~~~~~v~~s~~e~~~~~~~dl 178 (560)
+++|+|+||||||||||||||||+|+.. .+|||||++++||+.+... ...|.
T Consensus 77 ~~~G~n~~i~ayG~tgSGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~~Lf~~~~~~-~~~~~---------------- 139 (352)
T cd01364 77 VLMGYNCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQLFEKLESQ-NTEYS---------------- 139 (352)
T ss_pred HhCCCeEEEEECCCCCCCCcEEecCCCcccccccccccccCCchHHHHHHHHHHHHhc-cceeE----------------
Confidence 9999999999999999999999999743 4899999999999987654 23333
Q ss_pred cccCCCcccchhhhhhcccCCCCCCcccchhhhhhcccccceeeeeeeeehhhhhhhhcCCCCCcccccccccCCCCCCc
Q psy7618 179 LNVSRPTLFDTKAKLNIYHGRQSNGTQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLR 258 (560)
Q Consensus 179 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~~~~~~~~~~~~~~~ 258 (560)
|.+||+|||+|+++|||++.... ...
T Consensus 140 -----------------------------------------v~~S~~EIy~e~v~DLL~~~~~~----~~~--------- 165 (352)
T cd01364 140 -----------------------------------------VKVSYLELYNEELFDLLSSESDL----NKP--------- 165 (352)
T ss_pred -----------------------------------------EEEEEEEeeCCeeeeCCCCcccc----Ccc---------
Confidence 44899999999999999765300 000
Q ss_pred ccccchhHHHHHhhhccccccccccccccccccceeeEeecchhhcccccCCCcccccCCcccceecCCeEEEcCCHHHH
Q psy7618 259 SVTCQSVEEIENCRKKGYKSRKTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSVEEI 338 (560)
Q Consensus 259 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~lei~~~~~~dll~~~~~~~~~~~~~~~~~v~gL~~~~v~s~ee~ 338 (560)
+.+++ +....++++|+|++++.|.|++|+
T Consensus 166 ------------------------------------l~i~e---------------~~~~~~g~~v~gl~~~~v~s~~e~ 194 (352)
T cd01364 166 ------------------------------------LRIFD---------------DTNNKGGVVIQGLEEITVNNANEG 194 (352)
T ss_pred ------------------------------------ceEEe---------------ccCcCCCEEeCCcEEEEeCCHHHH
Confidence 33333 112456899999999999999999
Q ss_pred HHHHHHHHhhcccccccCCCCCCCcEEEEEEEEEEEeCC--CCceeEeeeeeeeeccCCcccccccCcchhhHHHhHhhh
Q psy7618 339 ENCRKKGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSK--TGKALIHSKLNLVDLAGSECLQKSNATDIRLKECCEINL 416 (560)
Q Consensus 339 ~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~l~~~~~~--~~~~~~~s~L~~VDLAGSEr~~~s~~~g~r~~E~~~IN~ 416 (560)
+.++..|.++|++++|.+|..|||||+||+|++.+.... +......|+|+||||||||+..++++.+.+++|+..||+
T Consensus 195 ~~~l~~g~~~R~~~~t~~n~~sSRSH~i~~i~i~~~~~~~~~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~iN~ 274 (352)
T cd01364 195 LKLLEKGSAKRKTAATLMNDQSSRSHSIFSITIHIKETTISGEELVKIGKLNLVDLAGSENIGRSGAENKRAREAGNINQ 274 (352)
T ss_pred HHHHHHHhhhcccccCcCCCCCCCCceEEEEEEEEeccCCCCCccEEEEEEEEEECCCccccccccCcchhhHHHhhhhH
Confidence 999999999999999999999999999999999887543 233456799999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhhCCCCCcCCCCCchhhhhccccCCCceEEEEEeeCCCcccHHHHHHHHHHHHHhccccccccccc
Q psy7618 417 SLLAVNKVISSTVAGKTYIPYRDSLLTQLLQDSFGGNAKTLMIANIGPAASTYKETLVTLEYANRAKKIKNAPNINF 493 (560)
Q Consensus 417 SL~aL~~vI~al~~~~~~iPyRdSkLT~lLqdsLgGnskt~mI~~vsP~~~~~~ETl~TL~fa~rak~Ikn~p~~n~ 493 (560)
||++|++||.+|..++.|||||+||||+||+|+|||||+|+||+||||...+++||++||+||++|++|+|.|.+|.
T Consensus 275 SL~~L~~vi~al~~~~~~vpyR~S~LT~lL~~~Lgg~s~t~~I~~vsp~~~~~~eTl~TL~~a~~~~~i~n~P~~n~ 351 (352)
T cd01364 275 SLLTLGRVINALVEKSPHIPYRESKLTRLLQDSLGGRTKTSIIATISPASINLEETLSTLEYAHRAKNIKNKPEVNQ 351 (352)
T ss_pred HHHHHHHHHHHHHcCCCCCCCcccHHHHHHHHhcCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999985
No 14
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=4.5e-78 Score=626.56 Aligned_cols=327 Identities=47% Similarity=0.717 Sum_probs=292.7
Q ss_pred CCeEEEEEeCCCCcchhccCCccEEEEcCCCceeEeecCCCCCCCCCCCCceeeeCCccccCCCcchhhhhccchHHHHH
Q psy7618 30 ENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYGMQATQTEIYENSVRPMVNH 109 (560)
Q Consensus 30 ~~ikV~vRvRP~~~~e~~~~~~~~v~~~~~~~~v~i~~~~~~~~~~~~~~~~~F~FD~VF~~~a~Q~~vf~~~~~plv~~ 109 (560)
++|+|+|||||++..|...+...++.+++....+.+.++... .....+.|.||+||+++++|++||+.++.|+|++
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~~~~f~fd~vf~~~~~q~~vy~~~~~plv~~ 76 (333)
T cd01371 1 ENVKVVVRCRPLNKREKSEGAPEIVGVDENRGQVTVHNPKAD----AKEPPKVFTFDAVYDPNSTQEDVYNETARPLVDS 76 (333)
T ss_pred CCeEEEEEcCcCChhhhhcCCCeEEEEcCCCCEEEEeCCccc----ccCCCceeeeccccCCCccHHHHHHHHHHHHHHH
Confidence 589999999999999988888889999888888888766431 2356789999999999999999999999999999
Q ss_pred HhcCCcEEEEEEcccCCCceEEeccCCC---CcChHHHHHHHHHHHHhhhccCcEEEEeehhhhhhhhhhhccccCCCcc
Q psy7618 110 MLHGYNVTIFAYGQTGTGKTFTMEGSQM---ERGIMQNAFRQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTL 186 (560)
Q Consensus 110 ~l~G~N~~i~aYG~TgSGKTyTm~G~~~---~~Giipr~l~~lF~~~~~~~~~~~~v~~s~~e~~~~~~~dll~~~~~~~ 186 (560)
+++|+|+||||||+|||||||||+|+.. ++|||||++++||+.+.......|.|
T Consensus 77 ~~~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~Lf~~~~~~~~~~~~v----------------------- 133 (333)
T cd01371 77 VLEGYNGTIFAYGQTGTGKTFTMEGVREPPELRGIIPNSFAHIFGHIAKAENVQFLV----------------------- 133 (333)
T ss_pred HhCCCceeEEecCCCCCCCcEeecCCCCcccccchHHHHHHHHHHHHhhccCccEEE-----------------------
Confidence 9999999999999999999999999887 99999999999999887655444444
Q ss_pred cchhhhhhcccCCCCCCcccchhhhhhcccccceeeeeeeeehhhhhhhhcCCCCCcccccccccCCCCCCcccccchhH
Q psy7618 187 FDTKAKLNIYHGRQSNGTQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSVE 266 (560)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 266 (560)
.+||+|||+|+++|||++.... .
T Consensus 134 ----------------------------------~~S~~Eiy~e~v~DLL~~~~~~------~----------------- 156 (333)
T cd01371 134 ----------------------------------RVSYLEIYNEEVRDLLGKDQKK------K----------------- 156 (333)
T ss_pred ----------------------------------EEEEEEeeCCeeeeCCCCCCCC------c-----------------
Confidence 4899999999999999754210 0
Q ss_pred HHHHhhhccccccccccccccccccceeeEeecchhhcccccCCCcccccCCcccceecCCeEEEcCCHHHHHHHHHHHH
Q psy7618 267 EIENCRKKGYKSRKTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSVEEIENCRKKGY 346 (560)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~v~~s~lei~~~~~~dll~~~~~~~~~~~~~~~~~v~gL~~~~v~s~ee~~~ll~~g~ 346 (560)
+++.+ ++..+++|+||+++.|.|++|+..++..|.
T Consensus 157 ----------------------------l~i~~-----------------~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~ 191 (333)
T cd01371 157 ----------------------------LELKE-----------------RPDRGVYVKDLSMFVVKNAEEMDKLMTLGN 191 (333)
T ss_pred ----------------------------eeEEE-----------------cCCCCEEeCCCEEEEeCCHHHHHHHHHHHH
Confidence 33333 344589999999999999999999999999
Q ss_pred hhcccccccCCCCCCCcEEEEEEEEEEEeCC--CCceeEeeeeeeeeccCCcccccccCcchhhHHHhHhhhhHHHHHHH
Q psy7618 347 KSRKTASTYFNDYSSRSHAIFIVTLKVLNSK--TGKALIHSKLNLVDLAGSECLQKSNATDIRLKECCEINLSLLAVNKV 424 (560)
Q Consensus 347 ~~R~~~~t~~N~~SSRSH~If~i~l~~~~~~--~~~~~~~s~L~~VDLAGSEr~~~s~~~g~r~~E~~~IN~SL~aL~~v 424 (560)
++|++++|.+|..|||||+||+|++++.+.. +......|+|+|||||||||..+++..|.+++|+..||+||++|++|
T Consensus 192 ~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~~~~~~E~~~iN~sL~~L~~v 271 (333)
T cd01371 192 KNRSVGATNMNEDSSRSHSIFTITIECSEKGEDGENHIRVGKLNLVDLAGSERQSKTGATGDRLKEATKINLSLSALGNV 271 (333)
T ss_pred hhCccccccccCCCCCCcEEEEEEEEEEeccCCCCCcEEEEEEEEEECCCCCcccccCCchhhhHhHhhhhhHHHHHHHH
Confidence 9999999999999999999999999887553 24456689999999999999999999999999999999999999999
Q ss_pred HHhhhCCCC-CcCCCCCchhhhhccccCCCceEEEEEeeCCCcccHHHHHHHHHHHHHhccc
Q psy7618 425 ISSTVAGKT-YIPYRDSLLTQLLQDSFGGNAKTLMIANIGPAASTYKETLVTLEYANRAKKI 485 (560)
Q Consensus 425 I~al~~~~~-~iPyRdSkLT~lLqdsLgGnskt~mI~~vsP~~~~~~ETl~TL~fa~rak~I 485 (560)
|.+|..++. ||||||||||+||+++|||||+|+||+||+|...+++||++||+||+|||+|
T Consensus 272 i~al~~~~~~~ipyR~SkLT~lL~~~l~g~s~t~~I~~vsP~~~~~~eTl~TL~fa~r~r~I 333 (333)
T cd01371 272 ISALVDGKSTHIPYRDSKLTRLLQDSLGGNSKTVMCANIGPADYNYDETLSTLRYANRAKNI 333 (333)
T ss_pred HHHHHhCCCCcCCCccCHHHHHHHHhcCCCceEEEEEEeCCccccHHHHHHHHHHHHHhhcC
Confidence 999999885 9999999999999999999999999999999999999999999999999987
No 15
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=2.2e-76 Score=610.38 Aligned_cols=315 Identities=38% Similarity=0.612 Sum_probs=274.8
Q ss_pred CeEEEEEeCCCCcchhccCCccEEEEcCC-C---ceeEeecCCCCCCCCCCCCceeeeCCccccCCCcchhhhhccchHH
Q psy7618 31 NIKVVVRCRPMNVPERKAHVENVIKIDTT-K---KCLSIQYSTDRLKPRQPGKARRFTFDAVYGMQATQTEIYENSVRPM 106 (560)
Q Consensus 31 ~ikV~vRvRP~~~~e~~~~~~~~v~~~~~-~---~~v~i~~~~~~~~~~~~~~~~~F~FD~VF~~~a~Q~~vf~~~~~pl 106 (560)
+|+|+|||||+.+.|. +...++.+... + ..+.+.++.. ....+.|.||+||+++++|++||+.++.|+
T Consensus 1 ~i~V~vRvRP~~~~e~--~~~~~v~~~~~~~~~~~~v~~~~~~~------~~~~~~f~FD~vf~~~~~q~~vy~~~~~pl 72 (319)
T cd01376 1 NVRVVVRVRPFLDCEE--DSSSCVRGIDSDQGQAKSVEIENPRN------RGETKKYQFDAFYGTECTQEDIFSREVKPI 72 (319)
T ss_pred CcEEEEEeCcCCcccc--CCCceEEEeCCCCCcceEEEEeCCCC------CCCccEEecCeEECCCCCHHHHHHHHHHHH
Confidence 6899999999988883 23444544322 2 3556555432 345678999999999999999999999999
Q ss_pred HHHHhcCCcEEEEEEcccCCCceEEeccCCCCcChHHHHHHHHHHHHhhhccCcEEEEeehhhhhhhhhhhccccCCCcc
Q psy7618 107 VNHMLHGYNVTIFAYGQTGTGKTFTMEGSQMERGIMQNAFRQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTL 186 (560)
Q Consensus 107 v~~~l~G~N~~i~aYG~TgSGKTyTm~G~~~~~Giipr~l~~lF~~~~~~~~~~~~v~~s~~e~~~~~~~dll~~~~~~~ 186 (560)
|+.+++|+|+||||||||||||||||+|+..++|||||++++||+.+++.. ..+
T Consensus 73 v~~~~~G~n~~i~ayG~tgSGKTyTm~G~~~~~Glipr~~~~Lf~~~~~~~-~~~------------------------- 126 (319)
T cd01376 73 VPHLLSGQNATVFAYGSTGAGKTHTMLGDPNEPGLIPRTLSDLLRMGRKQA-WTG------------------------- 126 (319)
T ss_pred HHHHhCCCceEEEEECCCCCCCcEEEeCCcCccchHHHHHHHHHHHHhhcc-ccc-------------------------
Confidence 999999999999999999999999999999999999999999999775432 222
Q ss_pred cchhhhhhcccCCCCCCcccchhhhhhcccccceeeeeeeeehhhhhhhhcCCCCCcccccccccCCCCCCcccccchhH
Q psy7618 187 FDTKAKLNIYHGRQSNGTQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSVE 266 (560)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 266 (560)
.|.+||+|||+|+++|||++....
T Consensus 127 --------------------------------~v~~S~~EIy~e~v~DLL~~~~~~------------------------ 150 (319)
T cd01376 127 --------------------------------AFSMSYYEIYNEKVYDLLEPAKKE------------------------ 150 (319)
T ss_pred --------------------------------eEEEEEEEEECCEeeEccCCCCCC------------------------
Confidence 345999999999999999754210
Q ss_pred HHHHhhhccccccccccccccccccceeeEeecchhhcccccCCCcccccCCcccceecCCeEEEcCCHHHHHHHHHHHH
Q psy7618 267 EIENCRKKGYKSRKTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSVEEIENCRKKGY 346 (560)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~v~~s~lei~~~~~~dll~~~~~~~~~~~~~~~~~v~gL~~~~v~s~ee~~~ll~~g~ 346 (560)
+.|.+ +..+++++.|++++.|.|++|+..++..|.
T Consensus 151 ----------------------------l~i~~-----------------~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~ 185 (319)
T cd01376 151 ----------------------------LPIRE-----------------DKDGNILIVGLTSKPIKSMAEFEEAYIPAS 185 (319)
T ss_pred ----------------------------ceEEE-----------------cCCCCEEeeCCEEEEeCCHHHHHHHHHHHH
Confidence 33333 335588999999999999999999999999
Q ss_pred hhcccccccCCCCCCCcEEEEEEEEEEEeCCCCceeEeeeeeeeeccCCcccccccCcchhhHHHhHhhhhHHHHHHHHH
Q psy7618 347 KSRKTASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIHSKLNLVDLAGSECLQKSNATDIRLKECCEINLSLLAVNKVIS 426 (560)
Q Consensus 347 ~~R~~~~t~~N~~SSRSH~If~i~l~~~~~~~~~~~~~s~L~~VDLAGSEr~~~s~~~g~r~~E~~~IN~SL~aL~~vI~ 426 (560)
++|.+++|.+|..|||||+||+|.+.+.+.. ....|+|+||||||||+..+++.+|.+++|+..||+||++|++||.
T Consensus 186 ~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~---~~~~s~l~~VDLAGsE~~~~~~~~g~~~~e~~~iN~Sl~~L~~vi~ 262 (319)
T cd01376 186 KNRTVAATKLNDNSSRSHAVLRIKVTQPASN---IQLEGKLNLIDLAGSEDNRRTGNEGIRLKESAAINSSLFVLSKVVD 262 (319)
T ss_pred hhhccccCcCCCccCCCeEEEEEEEEEECCC---ceEEEEEEEEECCCCCcccccCCccchhhhhhhhhhhHHHHHHHHH
Confidence 9999999999999999999999999877543 3568999999999999999999999999999999999999999999
Q ss_pred hhhCCCCCcCCCCCchhhhhccccCCCceEEEEEeeCCCcccHHHHHHHHHHHHHhc
Q psy7618 427 STVAGKTYIPYRDSLLTQLLQDSFGGNAKTLMIANIGPAASTYKETLVTLEYANRAK 483 (560)
Q Consensus 427 al~~~~~~iPyRdSkLT~lLqdsLgGnskt~mI~~vsP~~~~~~ETl~TL~fa~rak 483 (560)
+|..+..||||||||||+||+|+|||||+|+||+||||...+++||++||+||+|||
T Consensus 263 aL~~~~~~ipyr~S~LT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL~fa~r~~ 319 (319)
T cd01376 263 ALNKGLPRIPYRESKLTRLLQDSLGGGSRCIMVANIAPERSFYQDTLSTLNFASRSK 319 (319)
T ss_pred HHhcCCCcCCCccCHHHHHHHHhcCCCccEEEEEEeCCchhhHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999999999999999999986
No 16
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=5.1e-76 Score=610.04 Aligned_cols=319 Identities=43% Similarity=0.619 Sum_probs=284.5
Q ss_pred CCeEEEEEeCCCCcchhccCCccEEEEcCCCceeEeecCCCCCCCCCCCCceeeeCCccccCCCcchhhhhccchHHHHH
Q psy7618 30 ENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYGMQATQTEIYENSVRPMVNH 109 (560)
Q Consensus 30 ~~ikV~vRvRP~~~~e~~~~~~~~v~~~~~~~~v~i~~~~~~~~~~~~~~~~~F~FD~VF~~~a~Q~~vf~~~~~plv~~ 109 (560)
++|+|+|||||++..|...+...++.+.+. ..|.+..+ ...+.|.||+||+++++|++||+.++.|+|++
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~-~~v~~~~~---------~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~ 71 (325)
T cd01369 2 CNIKVVCRFRPLNEKEELRGSKSIVKFPGE-DTVSIAGS---------DDGKTFSFDRVFPPNTTQEDVYNFVAKPIVDD 71 (325)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEEcCC-CEEEecCC---------CCceEEEcCeEECCCCCHHHHHHHHHHHHHHH
Confidence 589999999999999877777888887655 56666543 34678999999999999999999999999999
Q ss_pred HhcCCcEEEEEEcccCCCceEEeccCCC---CcChHHHHHHHHHHHHhhhc-cCcEEEEeehhhhhhhhhhhccccCCCc
Q psy7618 110 MLHGYNVTIFAYGQTGTGKTFTMEGSQM---ERGIMQNAFRQIFDFKQKEK-RHKCIVECCYLELYQGKIRDLLNVSRPT 185 (560)
Q Consensus 110 ~l~G~N~~i~aYG~TgSGKTyTm~G~~~---~~Giipr~l~~lF~~~~~~~-~~~~~v~~s~~e~~~~~~~dll~~~~~~ 185 (560)
+++|+|+||||||+|||||||||+|+.. ++||+||++++||+.+.... ...|.
T Consensus 72 ~~~G~n~~i~ayG~tgSGKT~Tm~G~~~~~~~~Giipr~~~~Lf~~~~~~~~~~~~~----------------------- 128 (325)
T cd01369 72 VLNGYNGTIFAYGQTGSGKTYTMEGPPGDPELKGIIPRIVHDIFEHISSMDENLEFH----------------------- 128 (325)
T ss_pred HHcCccceEEEeCCCCCCceEEecCCCCccccCChHHHHHHHHHHHHhhccCCceEE-----------------------
Confidence 9999999999999999999999999988 89999999999999886643 22333
Q ss_pred ccchhhhhhcccCCCCCCcccchhhhhhcccccceeeeeeeeehhhhhhhhcCCCCCcccccccccCCCCCCcccccchh
Q psy7618 186 LFDTKAKLNIYHGRQSNGTQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSV 265 (560)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 265 (560)
|.+||+|||+|.++|||++....
T Consensus 129 ----------------------------------v~~S~~EIy~e~v~DLL~~~~~~----------------------- 151 (325)
T cd01369 129 ----------------------------------VKVSYLEIYMEKIRDLLDVSKDN----------------------- 151 (325)
T ss_pred ----------------------------------EEEEEEEEECCChhhcccCccCC-----------------------
Confidence 45899999999999999755210
Q ss_pred HHHHHhhhccccccccccccccccccceeeEeecchhhcccccCCCcccccCCcccceecCCeEEEcCCHHHHHHHHHHH
Q psy7618 266 EEIENCRKKGYKSRKTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSVEEIENCRKKG 345 (560)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~v~~s~lei~~~~~~dll~~~~~~~~~~~~~~~~~v~gL~~~~v~s~ee~~~ll~~g 345 (560)
+.+.+ +...+++++|++++.|.|++|++.+|..|
T Consensus 152 -----------------------------l~i~~-----------------~~~~~~~v~gl~~~~v~s~~e~~~~i~~~ 185 (325)
T cd01369 152 -----------------------------LQVHE-----------------DKNRGVYVKGLTERFVSSPEEVLEVINEG 185 (325)
T ss_pred -----------------------------ceEEE-----------------cCCCCEEEcCCEEEEcCCHHHHHHHHHHH
Confidence 22322 34458999999999999999999999999
Q ss_pred HhhcccccccCCCCCCCcEEEEEEEEEEEeCCCCceeEeeeeeeeeccCCcccccccCcchhhHHHhHhhhhHHHHHHHH
Q psy7618 346 YKSRKTASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIHSKLNLVDLAGSECLQKSNATDIRLKECCEINLSLLAVNKVI 425 (560)
Q Consensus 346 ~~~R~~~~t~~N~~SSRSH~If~i~l~~~~~~~~~~~~~s~L~~VDLAGSEr~~~s~~~g~r~~E~~~IN~SL~aL~~vI 425 (560)
.++|++++|.+|..|||||+||+|++.+.+...+ ....|+|+||||||||+..++++.|.+++|+..||+||++|++||
T Consensus 186 ~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~-~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~vi 264 (325)
T cd01369 186 KSNRAVASTNMNEESSRSHSIFLITLKQENVETG-SKKRGKLFLVDLAGSEKVSKTGAEGQTLEEAKKINKSLSALGNVI 264 (325)
T ss_pred HhhcccccCcCCCccccccEEEEEEEEEEecCCC-CEEEEEEEEEECCCCCcccccCCcchhHHHHHHHhHHHHHHHHHH
Confidence 9999999999999999999999999998765544 456899999999999999999999999999999999999999999
Q ss_pred HhhhCCC-CCcCCCCCchhhhhccccCCCceEEEEEeeCCCcccHHHHHHHHHHHHHhccc
Q psy7618 426 SSTVAGK-TYIPYRDSLLTQLLQDSFGGNAKTLMIANIGPAASTYKETLVTLEYANRAKKI 485 (560)
Q Consensus 426 ~al~~~~-~~iPyRdSkLT~lLqdsLgGnskt~mI~~vsP~~~~~~ETl~TL~fa~rak~I 485 (560)
.+|..++ .||||||||||+||+++|||+|+|+||+||||...+++||++||+||+|||+|
T Consensus 265 ~aL~~~~~~~vpyR~S~LT~lL~~~L~g~s~t~~I~~vsp~~~~~~eTl~TL~~a~r~~~i 325 (325)
T cd01369 265 NALTDGKSTHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSYNESETLSTLRFGARAKTI 325 (325)
T ss_pred HHHHcCCCCcCCCccCHHHHHHHHhcCCCCeEEEEEEeCCccccHHHHHHHHHHHHHhhcC
Confidence 9999988 99999999999999999999999999999999999999999999999999986
No 17
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=6e-76 Score=608.28 Aligned_cols=317 Identities=42% Similarity=0.608 Sum_probs=281.4
Q ss_pred CeEEEEEeCCCCcchhccCCccEEEEcCCCceeEeecCCCCCCCCCCCCceeeeCCccccCCCcchhhhhccchHHHHHH
Q psy7618 31 NIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYGMQATQTEIYENSVRPMVNHM 110 (560)
Q Consensus 31 ~ikV~vRvRP~~~~e~~~~~~~~v~~~~~~~~v~i~~~~~~~~~~~~~~~~~F~FD~VF~~~a~Q~~vf~~~~~plv~~~ 110 (560)
+|+|+||+||+...|.. +..+++.++.+ ..+.+.++ ...+.|.||+||+++++|++||+.++.|+|+++
T Consensus 1 ~V~V~vRvRP~~~~e~~-~~~~~~~~~~~-~~v~~~~~---------~~~~~f~fd~vf~~~~~q~~vy~~~~~p~v~~~ 69 (321)
T cd01374 1 KIKVSVRVRPLNPRESD-NEQVAWSIDND-NTISLEES---------TPGQSFTFDRVFGGESTNREVYERIAKPVVRSA 69 (321)
T ss_pred CeEEEEEcCcCCccccc-CCcceEEECCC-CEEEEcCC---------CCCeEEecCeEECCCCCHHHHHHHHHHHHHHHH
Confidence 69999999999988873 45567777764 45555432 456899999999999999999999999999999
Q ss_pred hcCCcEEEEEEcccCCCceEEeccCCCCcChHHHHHHHHHHHHhhhccCcEEEEeehhhhhhhhhhhccccCCCcccchh
Q psy7618 111 LHGYNVTIFAYGQTGTGKTFTMEGSQMERGIMQNAFRQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTK 190 (560)
Q Consensus 111 l~G~N~~i~aYG~TgSGKTyTm~G~~~~~Giipr~l~~lF~~~~~~~~~~~~v~~s~~e~~~~~~~dll~~~~~~~~~~~ 190 (560)
++|+|+||||||||||||||||+|+..++||+||++++||+.+.......|.
T Consensus 70 l~G~n~~i~ayG~tgSGKT~T~~G~~~~~Gli~r~~~~lf~~~~~~~~~~~~---------------------------- 121 (321)
T cd01374 70 LEGYNGTIFAYGQTSSGKTFTMSGDEQEPGIIPLAVRDIFQRIQDTPDREFL---------------------------- 121 (321)
T ss_pred HCCCceeEEeecCCCCCCceeccCCCCCCchHHHHHHHHHHHHhcccCceEE----------------------------
Confidence 9999999999999999999999999999999999999999988765444444
Q ss_pred hhhhcccCCCCCCcccchhhhhhcccccceeeeeeeeehhhhhhhhcCCCCCcccccccccCCCCCCcccccchhHHHHH
Q psy7618 191 AKLNIYHGRQSNGTQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSVEEIEN 270 (560)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 270 (560)
|.+||+|||+|+++|||++....
T Consensus 122 -----------------------------v~~S~~Eiy~e~v~DLL~~~~~~---------------------------- 144 (321)
T cd01374 122 -----------------------------LRVSYLEIYNEKIKDLLSPSPQE---------------------------- 144 (321)
T ss_pred -----------------------------EEEEEEEEEcCEeEEccCCCCCC----------------------------
Confidence 44899999999999999766310
Q ss_pred hhhccccccccccccccccccceeeEeecchhhcccccCCCcccccCCcccceecCCeEEEcCCHHHHHHHHHHHHhhcc
Q psy7618 271 CRKKGYKSRKTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSVEEIENCRKKGYKSRK 350 (560)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~v~~s~lei~~~~~~dll~~~~~~~~~~~~~~~~~v~gL~~~~v~s~ee~~~ll~~g~~~R~ 350 (560)
+++.+ +...+++++|++++.|.|++|+..+|..|.++|+
T Consensus 145 ------------------------l~i~~-----------------~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~ 183 (321)
T cd01374 145 ------------------------LRIRE-----------------DPNKGVVVAGLTEEIVTSPEHLLQLIARGEKNRH 183 (321)
T ss_pred ------------------------ceEEE-----------------CCCCCEEeCCceEEEeCCHHHHHHHHHHHHhccc
Confidence 34443 3345889999999999999999999999999999
Q ss_pred cccccCCCCCCCcEEEEEEEEEEEeCCC--CceeEeeeeeeeeccCCcccccccCcchhhHHHhHhhhhHHHHHHHHHhh
Q psy7618 351 TASTYFNDYSSRSHAIFIVTLKVLNSKT--GKALIHSKLNLVDLAGSECLQKSNATDIRLKECCEINLSLLAVNKVISST 428 (560)
Q Consensus 351 ~~~t~~N~~SSRSH~If~i~l~~~~~~~--~~~~~~s~L~~VDLAGSEr~~~s~~~g~r~~E~~~IN~SL~aL~~vI~al 428 (560)
.++|.+|..|||||+||+|++.+..... ......|+|+|||||||||..+.+ .+.+++|+..||+||++|++||.+|
T Consensus 184 ~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~l~~vDLAGsE~~~~~~-~~~~~~e~~~iN~Sl~~L~~vi~al 262 (321)
T cd01374 184 VGETDFNERSSRSHTIFQLTIESRERGDSESGTVRVSTLNLIDLAGSERASQTG-AGERRKEGSFINKSLLTLGTVISKL 262 (321)
T ss_pred cccCcCCCccccccEEEEEEEEEEecCCCCCCcEEEEEEEEEECCCCCccccCC-CCccccccchhhhHHHHHHHHHHHH
Confidence 9999999999999999999999876543 245668999999999999999998 8999999999999999999999999
Q ss_pred hCCC--CCcCCCCCchhhhhccccCCCceEEEEEeeCCCcccHHHHHHHHHHHHHhccc
Q psy7618 429 VAGK--TYIPYRDSLLTQLLQDSFGGNAKTLMIANIGPAASTYKETLVTLEYANRAKKI 485 (560)
Q Consensus 429 ~~~~--~~iPyRdSkLT~lLqdsLgGnskt~mI~~vsP~~~~~~ETl~TL~fa~rak~I 485 (560)
..++ .||||||||||+||+++|||||+|+||+||||...+++||++||+||+||++|
T Consensus 263 ~~~~~~~~vpyR~SkLT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL~~a~r~~~i 321 (321)
T cd01374 263 SEGKNSGHIPYRDSKLTRILQPSLSGNARTAIICTISPASSHVEETLNTLKFASRAKKV 321 (321)
T ss_pred HhcCCCCcCCCcCCHHHHHHHHhcCCCceEEEEEEeCCccccHHHHHHHHHHHHHHhcC
Confidence 9986 99999999999999999999999999999999999999999999999999986
No 18
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=7.1e-76 Score=613.12 Aligned_cols=321 Identities=42% Similarity=0.631 Sum_probs=284.7
Q ss_pred CeEEEEEeCCCCcchhccCCccEEEEcCCCceeEeecCCCCCCCCCCCCceeeeCCccccCCCcchhhhhccchHHHHHH
Q psy7618 31 NIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYGMQATQTEIYENSVRPMVNHM 110 (560)
Q Consensus 31 ~ikV~vRvRP~~~~e~~~~~~~~v~~~~~~~~v~i~~~~~~~~~~~~~~~~~F~FD~VF~~~a~Q~~vf~~~~~plv~~~ 110 (560)
+|+|+||+||+...|...+...++.+.+.+..+.+.. .+.|.||+||+++++|++||+.++.|+|+++
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~------------~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~ 69 (341)
T cd01372 2 SVRVAVRVRPLLPKELLEGCQVCVSVVPGEPQVTVGT------------DKSFTFDYVFDPSTSQEEVYNTCVAPLVDGL 69 (341)
T ss_pred CeEEEEECCCCCchhcccCCCeEEEEeCCCCEEEecC------------CcEEeccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 6999999999999998877777888877666666532 5689999999999999999999999999999
Q ss_pred hcCCcEEEEEEcccCCCceEEeccCC------CCcChHHHHHHHHHHHHhhhcc-CcEEEEeehhhhhhhhhhhccccCC
Q psy7618 111 LHGYNVTIFAYGQTGTGKTFTMEGSQ------MERGIMQNAFRQIFDFKQKEKR-HKCIVECCYLELYQGKIRDLLNVSR 183 (560)
Q Consensus 111 l~G~N~~i~aYG~TgSGKTyTm~G~~------~~~Giipr~l~~lF~~~~~~~~-~~~~v~~s~~e~~~~~~~dll~~~~ 183 (560)
++|+|+||||||||||||||||+|+. .++|||||++++||+.++.... ..|.
T Consensus 70 ~~G~n~~i~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~~~~~~~~~~~~--------------------- 128 (341)
T cd01372 70 FEGYNATVLAYGQTGSGKTYTMGTAFTASEDEEEVGIIPRAIQHIFKKIDEKKDEPDFQ--------------------- 128 (341)
T ss_pred hCCCccceeeecCCCCCCcEEecCCCccccccccCChHHHHHHHHHHHHHhccccceEE---------------------
Confidence 99999999999999999999999974 4799999999999998876542 3333
Q ss_pred CcccchhhhhhcccCCCCCCcccchhhhhhcccccceeeeeeeeehhhhhhhhcCCCCCcccccccccCCCCCCcccccc
Q psy7618 184 PTLFDTKAKLNIYHGRQSNGTQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQ 263 (560)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (560)
|.+||+|||+|+++|||.+.... ...
T Consensus 129 ------------------------------------v~vS~~EIy~e~v~DLL~~~~~~----~~~-------------- 154 (341)
T cd01372 129 ------------------------------------LKVSFLELYNEEVRDLLSPSTSE----KSP-------------- 154 (341)
T ss_pred ------------------------------------EEEEEEEeECCeeecCCCCcccC----CCC--------------
Confidence 44899999999999999765300 000
Q ss_pred hhHHHHHhhhccccccccccccccccccceeeEeecchhhcccccCCCcccccCCcccceecCCeEEEcCCHHHHHHHHH
Q psy7618 264 SVEEIENCRKKGYKSRKTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSVEEIENCRK 343 (560)
Q Consensus 264 s~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~lei~~~~~~dll~~~~~~~~~~~~~~~~~v~gL~~~~v~s~ee~~~ll~ 343 (560)
+.|+ .+..++++|.|++++.|.|++|++.+|.
T Consensus 155 -------------------------------l~i~-----------------e~~~~~~~i~gl~~~~v~s~~e~~~~l~ 186 (341)
T cd01372 155 -------------------------------IQIR-----------------EDSKGNIIIVGLTEVTVNSAQEVMSCLE 186 (341)
T ss_pred -------------------------------ceEE-----------------ECCCCCEecCCCEEEEECCHHHHHHHHH
Confidence 3333 3445699999999999999999999999
Q ss_pred HHHhhcccccccCCCCCCCcEEEEEEEEEEEeCC---------CCceeEeeeeeeeeccCCcccccccCcchhhHHHhHh
Q psy7618 344 KGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSK---------TGKALIHSKLNLVDLAGSECLQKSNATDIRLKECCEI 414 (560)
Q Consensus 344 ~g~~~R~~~~t~~N~~SSRSH~If~i~l~~~~~~---------~~~~~~~s~L~~VDLAGSEr~~~s~~~g~r~~E~~~I 414 (560)
.|.++|..++|.+|..|||||+||+|++.+.... .......|+|+||||||||+..++++.|.+++|+..|
T Consensus 187 ~g~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~i 266 (341)
T cd01372 187 QGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPIAPMSGDDKNSTLTSKFHFVDLAGSERLKKTGATGDRLKEGISI 266 (341)
T ss_pred HHHHhcccccccCCCccCcCcEEEEEEEEEEecCCccccccccCCCceeeEEEEEEECCCCcccccccCchhHhHHHHHH
Confidence 9999999999999999999999999999988654 3345678999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhhhCCC---CCcCCCCCchhhhhccccCCCceEEEEEeeCCCcccHHHHHHHHHHHHHhcccc
Q psy7618 415 NLSLLAVNKVISSTVAGK---TYIPYRDSLLTQLLQDSFGGNAKTLMIANIGPAASTYKETLVTLEYANRAKKIK 486 (560)
Q Consensus 415 N~SL~aL~~vI~al~~~~---~~iPyRdSkLT~lLqdsLgGnskt~mI~~vsP~~~~~~ETl~TL~fa~rak~Ik 486 (560)
|+||++|++||.+|..++ .||||||||||+||+++||||++|+||+||||...+++||++||+||+|||+||
T Consensus 267 n~sl~aL~~vi~al~~~~~~~~~ipyR~S~LT~lL~~~Lgg~s~t~~I~~vsp~~~~~~eTl~tL~~a~~~~~ik 341 (341)
T cd01372 267 NSGLLALGNVISALGDESKKGSHVPYRDSKLTRLLQDSLGGNSHTLMIACVSPADSNFEETLNTLKYANRARNIK 341 (341)
T ss_pred hHHHHHHHHHHHHHHhcCCCCCCCCCcccHHHHHHHHhcCCCceEEEEEEeCCChhhHHHHHHHHHHHHHhccCC
Confidence 999999999999999877 799999999999999999999999999999999999999999999999999996
No 19
>KOG0239|consensus
Probab=100.00 E-value=1.4e-76 Score=651.61 Aligned_cols=348 Identities=39% Similarity=0.553 Sum_probs=297.1
Q ss_pred hhccccCCCCCCCCCCCCeEEEEEeCCCCcchhccCCccEEEEcCCCceeEeecCCCCCCCCCCCCceeeeCCccccCCC
Q psy7618 14 ECRRTKSLHPNEHHQDENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYGMQA 93 (560)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~ikV~vRvRP~~~~e~~~~~~~~v~~~~~~~~v~i~~~~~~~~~~~~~~~~~F~FD~VF~~~a 93 (560)
|...++.+|+...+.+|||||||||||+.+.+.......++..+.. ..+.+..+.. ..+...+.|.||+||+|.+
T Consensus 298 e~~~r~kL~N~i~eLkGnIRV~CRvRP~~~~e~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~f~fdkVf~p~~ 372 (670)
T KOG0239|consen 298 EKEERRKLHNEILELKGNIRVFCRVRPLLPSEKQRLQSKVIDTEEQ-GEVQVDSPDK----GDKLEPQSFKFDKVFGPLA 372 (670)
T ss_pred HHHHHHHHHHHHHHhhcCceEEEEecCCCccccccccccccccCCc-ceeEeecCCC----CCCCccccceeeeecCCcc
Confidence 3445667999999999999999999999988876533333333322 3344444332 1122233699999999999
Q ss_pred cchhhhhccchHHHHHHhcCCcEEEEEEcccCCCceEEecc-CCCCcChHHHHHHHHHHHHhhhc-cCcEEEEeehhhhh
Q psy7618 94 TQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEG-SQMERGIMQNAFRQIFDFKQKEK-RHKCIVECCYLELY 171 (560)
Q Consensus 94 ~Q~~vf~~~~~plv~~~l~G~N~~i~aYG~TgSGKTyTm~G-~~~~~Giipr~l~~lF~~~~~~~-~~~~~v~~s~~e~~ 171 (560)
+|++||.+ +.|+|+++|+|||+||||||||||||||||.| ++.++|||||+++.||..++... .|.|.+.
T Consensus 373 sQ~~VF~e-~~~lv~S~lDGYnVCIFAYGQTGSGKTyTM~G~~~~~~Giipral~~lF~~~~~~~~g~~y~~~------- 444 (670)
T KOG0239|consen 373 SQDDVFEE-VSPLVQSALDGYNVCIFAYGQTGSGKTYTMSGPTPEDPGIIPRALEKLFRTITSLKSGWKYDKT------- 444 (670)
T ss_pred cHHHHHHH-HHHHHHHHhcCcceeEEEecccCCCccccccCCCcccCCccHHHHHHHHHHHHhhccCceEEee-------
Confidence 99999999 89999999999999999999999999999999 68999999999999999988765 4666655
Q ss_pred hhhhhhccccCCCcccchhhhhhcccCCCCCCcccchhhhhhcccccceeeeeeeeehhhhhhhhcCCCCCccccccccc
Q psy7618 172 QGKIRDLLNVSRPTLFDTKAKLNIYHGRQSNGTQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLT 251 (560)
Q Consensus 172 ~~~~~dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~~~~~~~~ 251 (560)
++|+|||||.|+|||..... ..+
T Consensus 445 --------------------------------------------------~s~~EIYNe~i~DlL~~~~~-----~~k-- 467 (670)
T KOG0239|consen 445 --------------------------------------------------VSMLEIYNEAIRDLLSDESY-----VGK-- 467 (670)
T ss_pred --------------------------------------------------eehhHHHHHHHHHhcccccc-----ccc--
Confidence 77777788888888765520 000
Q ss_pred CCCCCCcccccchhHHHHHhhhccccccccccccccccccceeeEeecchhhcccccCCCcccccCCcccceecCCeEEE
Q psy7618 252 LPCKGLRSVTCQSVEEIENCRKKGYKSRKTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVT 331 (560)
Q Consensus 252 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~lei~~~~~~dll~~~~~~~~~~~~~~~~~v~gL~~~~ 331 (560)
++|.. +..+..+|.|++.+.
T Consensus 468 -------------------------------------------~~I~~-----------------~~~~~~~V~~~t~~~ 487 (670)
T KOG0239|consen 468 -------------------------------------------LEIVD-----------------DAEGNLMVPLLTVIK 487 (670)
T ss_pred -------------------------------------------eeEEE-----------------cCCCceecccceEEe
Confidence 44444 344578999999999
Q ss_pred cCCHHHHHHHHHHHHhhcccccccCCCCCCCcEEEEEEEEEEEeCCCCceeEeeeeeeeeccCCcccccccCcchhhHHH
Q psy7618 332 CQSVEEIENCRKKGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIHSKLNLVDLAGSECLQKSNATDIRLKEC 411 (560)
Q Consensus 332 v~s~ee~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~l~~~~~~~~~~~~~s~L~~VDLAGSEr~~~s~~~g~r~~E~ 411 (560)
|.+.+|+..++..|.++|.+++|.+|+.|||||+||+|+|...+...+ ....+.|+|||||||||+++++++|.|++|+
T Consensus 488 V~s~~~v~~ll~~g~~nRsv~~T~~Ne~SSRSH~v~~v~v~g~~~~t~-~~~~g~l~LVDLAGSER~~~s~~tG~RlkE~ 566 (670)
T KOG0239|consen 488 VGSSEEVDILLEIGLSNRSVASTASNERSSRSHLVFRVRIRGINELTG-IRVTGVLNLVDLAGSERVSKSGVTGERLKEA 566 (670)
T ss_pred cCCHHHHHHHHHHhhccccccccccchhhhccceEEEEEEeccccCcc-cccccceeEeecccCcccCcCCCchhhhHHH
Confidence 999999999999999999999999999999999999999988766555 4457999999999999999999999999999
Q ss_pred hHhhhhHHHHHHHHHhhhCCCCCcCCCCCchhhhhccccCCCceEEEEEeeCCCcccHHHHHHHHHHHHHhccccccccc
Q psy7618 412 CEINLSLLAVNKVISSTVAGKTYIPYRDSLLTQLLQDSFGGNAKTLMIANIGPAASTYKETLVTLEYANRAKKIKNAPNI 491 (560)
Q Consensus 412 ~~IN~SL~aL~~vI~al~~~~~~iPyRdSkLT~lLqdsLgGnskt~mI~~vsP~~~~~~ETl~TL~fa~rak~Ikn~p~~ 491 (560)
++||+||++||+||.||+....||||||||||+|||++|||++||+|+++|||...++.||+++|+||+|++.+...+..
T Consensus 567 Q~INkSLS~LgdVi~AL~~k~~HiPyRNSKLT~lLq~sLGG~sKTLmfv~isP~~~~~~Etl~sL~FA~rv~~~~lG~a~ 646 (670)
T KOG0239|consen 567 QNINKSLSALGDVISALASKRSHIPYRNSKLTQLLQDSLGGDSKTLMFVNISPAAAALFETLCSLRFATRVRSVELGSAR 646 (670)
T ss_pred HHhchhhhhhHHHHHHHhhcCCCCcccccchHHHhHhhhCCccceeeEEEeCccHHHHhhhhhccchHHHhhceeccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988755
Q ss_pred c
Q psy7618 492 N 492 (560)
Q Consensus 492 n 492 (560)
-
T Consensus 647 ~ 647 (670)
T KOG0239|consen 647 K 647 (670)
T ss_pred c
Confidence 4
No 20
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=4.2e-75 Score=604.25 Aligned_cols=327 Identities=38% Similarity=0.542 Sum_probs=280.9
Q ss_pred CeEEEEEeCCCCcchhccCCccEEEEcCCCceeEeecCCCCCCCC--CCCCceeeeCCccccCCCcchhhhhccchHHHH
Q psy7618 31 NIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPR--QPGKARRFTFDAVYGMQATQTEIYENSVRPMVN 108 (560)
Q Consensus 31 ~ikV~vRvRP~~~~e~~~~~~~~v~~~~~~~~v~i~~~~~~~~~~--~~~~~~~F~FD~VF~~~a~Q~~vf~~~~~plv~ 108 (560)
+|+|+||+||+...+. ..+.+.+++..+++..|....... .....+.|.||+||++ ++|++||+.++.|+|+
T Consensus 1 ~i~V~vRvRP~~~~~~-----~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~f~FD~vf~~-~~q~~vy~~~~~p~v~ 74 (334)
T cd01375 1 TIQVFVRVRPTPTKQG-----SSIKLGPDGKSVSSNLPKDLVRGVVNNQQEDFSFKFDGVFHN-ASQEEVYETVAKPVVD 74 (334)
T ss_pred CeEEEEECCCCCCCCC-----ccEEEcCCCCEEEEecccccccccccCCcCceEEEcCcccCC-CCHHHHHHHHHHHHHH
Confidence 5899999999987443 235677777888887766543322 2345678999999999 9999999999999999
Q ss_pred HHhcCCcEEEEEEcccCCCceEEeccCC---CCcChHHHHHHHHHHHHhhhccCcEEEEeehhhhhhhhhhhccccCCCc
Q psy7618 109 HMLHGYNVTIFAYGQTGTGKTFTMEGSQ---MERGIMQNAFRQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPT 185 (560)
Q Consensus 109 ~~l~G~N~~i~aYG~TgSGKTyTm~G~~---~~~Giipr~l~~lF~~~~~~~~~~~~v~~s~~e~~~~~~~dll~~~~~~ 185 (560)
++++|+|+||||||||||||||||+|+. .++|||||++++||+.++......|.|.
T Consensus 75 ~~~~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~lf~~~~~~~~~~~~v~--------------------- 133 (334)
T cd01375 75 SALDGYNGTIFAYGQTGAGKTFTMTGGTESYKDRGLIPRALEQVFREVAMRATKTYTVH--------------------- 133 (334)
T ss_pred HHhCCCccceeeecCCCCCCeEEccCCCCcccCCchHHHHHHHHHHHHHhccCcceEEE---------------------
Confidence 9999999999999999999999999976 4799999999999999877655445444
Q ss_pred ccchhhhhhcccCCCCCCcccchhhhhhcccccceeeeeeeeehhhhhhhhcCCCCCcccccccccCCCCCCcccccchh
Q psy7618 186 LFDTKAKLNIYHGRQSNGTQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSV 265 (560)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 265 (560)
+||+|||+|+++|||++..... ....
T Consensus 134 ------------------------------------~S~~Eiy~e~v~DLL~~~~~~~-~~~~----------------- 159 (334)
T cd01375 134 ------------------------------------VSYLEIYNEQLYDLLGDTPEAL-ESLP----------------- 159 (334)
T ss_pred ------------------------------------EEEEEEECCEeecCCCCCcccc-ccCC-----------------
Confidence 8899999999999997663210 0000
Q ss_pred HHHHHhhhccccccccccccccccccceeeEeecchhhcccccCCCcccccCCcccceecCCeEEEcCCHHHHHHHHHHH
Q psy7618 266 EEIENCRKKGYKSRKTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSVEEIENCRKKG 345 (560)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~v~~s~lei~~~~~~dll~~~~~~~~~~~~~~~~~v~gL~~~~v~s~ee~~~ll~~g 345 (560)
-+.|. +++..+++|+|++++.|.+++|++.++..|
T Consensus 160 ----------------------------~l~i~-----------------e~~~~~~~v~gl~~~~v~s~~e~~~~~~~g 194 (334)
T cd01375 160 ----------------------------AVTIL-----------------EDSEQNIHVKGLSLHSATTEEEALNLLFLG 194 (334)
T ss_pred ----------------------------ceEEE-----------------EcCCCCEEeCCcEEEEeCCHHHHHHHHHHH
Confidence 02333 334568999999999999999999999999
Q ss_pred HhhcccccccCCCCCCCcEEEEEEEEEEEeCC-CCceeEeeeeeeeeccCCcccccccCcchhhHHHhHhhhhHHHHHHH
Q psy7618 346 YKSRKTASTYFNDYSSRSHAIFIVTLKVLNSK-TGKALIHSKLNLVDLAGSECLQKSNATDIRLKECCEINLSLLAVNKV 424 (560)
Q Consensus 346 ~~~R~~~~t~~N~~SSRSH~If~i~l~~~~~~-~~~~~~~s~L~~VDLAGSEr~~~s~~~g~r~~E~~~IN~SL~aL~~v 424 (560)
.++|.+++|.+|..|||||+||+|++.+.+.. .+.....|+|+|||||||||..+++..+.+++|+..||+||++|++|
T Consensus 195 ~~~R~~~~t~~n~~sSRSH~i~~l~v~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~e~~~iN~SL~~L~~v 274 (334)
T cd01375 195 ETNRTIAETSMNQASSRSHCIFTIHLESRSREAGSEVVRLSKLNLVDLAGSERVSKTGVSGQVLKEAKYINKSLSFLEQV 274 (334)
T ss_pred HhhcccccCcCcCCcCcCeEEEEEEEEEEecCCCCCceEEEEEEEEECCCCCccccccCchhhhhhhhhhhhhHHHHHHH
Confidence 99999999999999999999999999987322 23356689999999999999999999999999999999999999999
Q ss_pred HHhhhCCC-CCcCCCCCchhhhhccccCCCceEEEEEeeCCCcccHHHHHHHHHHHHHhc
Q psy7618 425 ISSTVAGK-TYIPYRDSLLTQLLQDSFGGNAKTLMIANIGPAASTYKETLVTLEYANRAK 483 (560)
Q Consensus 425 I~al~~~~-~~iPyRdSkLT~lLqdsLgGnskt~mI~~vsP~~~~~~ETl~TL~fa~rak 483 (560)
|.+|..++ .||||||||||+||+|+|||||+|+||+||||...+++||++||+||+|++
T Consensus 275 i~~l~~~~~~~ipyRdSkLT~lL~d~Lgg~~~t~~I~~vsp~~~~~~eTl~TL~fa~r~~ 334 (334)
T cd01375 275 INALSEKARTHVPYRNSKLTHVLRDSLGGNCKTVMLATIWVEPSNLDETLSTLRFAQRVA 334 (334)
T ss_pred HHHHHhCCCCCCCCcccHHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 99999998 999999999999999999999999999999999999999999999999985
No 21
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=1.5e-73 Score=592.76 Aligned_cols=328 Identities=42% Similarity=0.615 Sum_probs=286.1
Q ss_pred CCCeEEEEEeCCCCcchhccCCccEEEEcCCC-ceeEeecCCCCCCCCCCCCceeeeCCccccCCCcchhhhhccchHHH
Q psy7618 29 DENIKVVVRCRPMNVPERKAHVENVIKIDTTK-KCLSIQYSTDRLKPRQPGKARRFTFDAVYGMQATQTEIYENSVRPMV 107 (560)
Q Consensus 29 ~~~ikV~vRvRP~~~~e~~~~~~~~v~~~~~~-~~v~i~~~~~~~~~~~~~~~~~F~FD~VF~~~a~Q~~vf~~~~~plv 107 (560)
+|+|+|+||+||+...|. ....+++.+...+ ..+.+... ....+.|.||+||+++++|++||+. +.|+|
T Consensus 1 ~~~i~V~vRirP~~~~e~-~~~~~~~~~~~~~~~~i~~~~~--------~~~~~~f~fD~vf~~~~~q~~v~~~-v~p~v 70 (329)
T cd01366 1 KGNIRVFCRVRPLLPSES-TEYSSVISFPDEDGGTIELSKG--------TGKKKSFSFDRVFDPDASQEDVFEE-VSPLV 70 (329)
T ss_pred CCCEEEEEEcCcCCcccc-CCCccEEEEcCCCceEEEEeCC--------CCCceEEecCEEECCCCCHHHHHHH-HHHHH
Confidence 478999999999988876 3445567776654 55555432 2557789999999999999999998 69999
Q ss_pred HHHhcCCcEEEEEEcccCCCceEEeccCCCCcChHHHHHHHHHHHHhhhccCcEEEEeehhhhhhhhhhhccccCCCccc
Q psy7618 108 NHMLHGYNVTIFAYGQTGTGKTFTMEGSQMERGIMQNAFRQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLF 187 (560)
Q Consensus 108 ~~~l~G~N~~i~aYG~TgSGKTyTm~G~~~~~Giipr~l~~lF~~~~~~~~~~~~v~~s~~e~~~~~~~dll~~~~~~~~ 187 (560)
+++++|+|+||||||+|||||||||+|+..++||+||++++||+.++.....
T Consensus 71 ~~~~~G~~~~i~ayG~tgSGKT~tl~G~~~~~Gli~r~~~~lf~~~~~~~~~---------------------------- 122 (329)
T cd01366 71 QSALDGYNVCIFAYGQTGSGKTYTMEGPPENPGIIPRALEQLFNTAEELKEK---------------------------- 122 (329)
T ss_pred HHHhCCCceEEEEeCCCCCCCcEEecCCCCCCCcHHHHHHHHHHHHHhhhcc----------------------------
Confidence 9999999999999999999999999999999999999999999988765321
Q ss_pred chhhhhhcccCCCCCCcccchhhhhhcccccceeeeeeeeehhhhhhhhcCCCCCcccccccccCCCCCCcccccchhHH
Q psy7618 188 DTKAKLNIYHGRQSNGTQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSVEE 267 (560)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 267 (560)
...+.|.+||+|||+|+++|||.+.... ..
T Consensus 123 ---------------------------~~~~~v~~S~~EIy~e~v~DLL~~~~~~----~~------------------- 152 (329)
T cd01366 123 ---------------------------GWSYTITASMLEIYNETIRDLLATKPAP----KK------------------- 152 (329)
T ss_pred ---------------------------CceEEEEEEEEEEECCEeEECCCCCcCC----CC-------------------
Confidence 1123355999999999999999765200 00
Q ss_pred HHHhhhccccccccccccccccccceeeEeecchhhcccccCCCcccccCCcccceecCCeEEEcCCHHHHHHHHHHHHh
Q psy7618 268 IENCRKKGYKSRKTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSVEEIENCRKKGYK 347 (560)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~v~~s~lei~~~~~~dll~~~~~~~~~~~~~~~~~v~gL~~~~v~s~ee~~~ll~~g~~ 347 (560)
.++|.+ +..++++++|++++.|.|++|+..++..|.+
T Consensus 153 --------------------------~l~i~~-----------------~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~ 189 (329)
T cd01366 153 --------------------------KLEIKH-----------------DSKGETYVTNLTEVPVSSPEEVTRLLNLGSK 189 (329)
T ss_pred --------------------------ceEEEE-----------------CCCCCEEecCCEEEEeCCHHHHHHHHHHHHh
Confidence 044444 2356899999999999999999999999999
Q ss_pred hcccccccCCCCCCCcEEEEEEEEEEEeCCCCceeEeeeeeeeeccCCcccccccCcchhhHHHhHhhhhHHHHHHHHHh
Q psy7618 348 SRKTASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIHSKLNLVDLAGSECLQKSNATDIRLKECCEINLSLLAVNKVISS 427 (560)
Q Consensus 348 ~R~~~~t~~N~~SSRSH~If~i~l~~~~~~~~~~~~~s~L~~VDLAGSEr~~~s~~~g~r~~E~~~IN~SL~aL~~vI~a 427 (560)
+|.+++|.+|..|||||+||+|++.+.+...+ ....|+|+||||||||+..+.++.+.+++|+..||+||++|++||.+
T Consensus 190 ~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~-~~~~s~l~~VDLaGsE~~~~~~~~~~~~~e~~~in~Sl~~L~~vl~~ 268 (329)
T cd01366 190 NRSVASTNMNEHSSRSHAVFQLKIRGTNLQTG-EQTRGKLNLVDLAGSERLKKSGATGDRLKEAQAINKSLSALGDVISA 268 (329)
T ss_pred hcccccccccCCCCCccEEEEEEEEEEcCCCC-cEEEEEEEEEECCCCcccccccccchhhHhHhhhhhHHHHHHHHHHH
Confidence 99999999999999999999999998766544 45689999999999999999999999999999999999999999999
Q ss_pred hhCCCCCcCCCCCchhhhhccccCCCceEEEEEeeCCCcccHHHHHHHHHHHHHhcccccc
Q psy7618 428 TVAGKTYIPYRDSLLTQLLQDSFGGNAKTLMIANIGPAASTYKETLVTLEYANRAKKIKNA 488 (560)
Q Consensus 428 l~~~~~~iPyRdSkLT~lLqdsLgGnskt~mI~~vsP~~~~~~ETl~TL~fa~rak~Ikn~ 488 (560)
|..+..||||||||||+||+++|||+++|+||+||||...+++||++||+||+++++|++.
T Consensus 269 l~~~~~~ipyr~S~LT~lL~~~l~g~~~t~~i~~vsp~~~~~~etl~tL~~a~~~~~i~~~ 329 (329)
T cd01366 269 LRSKDSHVPYRNSKLTYLLQDSLGGNSKTLMFVNISPLESNLSETLCSLRFASRVRSVELG 329 (329)
T ss_pred HhcCCCcCCCcccHhHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHhhcccCC
Confidence 9999999999999999999999999999999999999999999999999999999999873
No 22
>KOG0247|consensus
Probab=100.00 E-value=4.1e-74 Score=608.23 Aligned_cols=399 Identities=28% Similarity=0.444 Sum_probs=305.9
Q ss_pred CCCCCCeEEEEEeCCCCcchhccCCccEEEEcCCCceeEeecCCCC-CCC--CCCCCceeeeCCccccCCCcchhhhhcc
Q psy7618 26 HHQDENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDR-LKP--RQPGKARRFTFDAVYGMQATQTEIYENS 102 (560)
Q Consensus 26 ~~~~~~ikV~vRvRP~~~~e~~~~~~~~v~~~~~~~~v~i~~~~~~-~~~--~~~~~~~~F~FD~VF~~~a~Q~~vf~~~ 102 (560)
.+..+.+.|+||+||+.. ..+...++.|......+ +..|... ... ..+...+.|.|.+||+|+++|.+||+.+
T Consensus 27 ~~~~d~v~v~~rvrP~~~---~~~~~g~l~v~n~~tiv-L~~P~d~~~~~~~n~~q~e~~fsFt~VF~p~~tQ~dvF~~~ 102 (809)
T KOG0247|consen 27 CESKDPVLVVCRVRPLSD---ASEDEGCLRVINEETIV-LETPEDSFARRSVNGGQMEKKFSFTKVFGPSVTQADVFDTT 102 (809)
T ss_pred hhhhcchheeEeecCCCC---CccccceEEEeccceeE-eeCcHHHHhhhccCccceeeEeeeeeecCCCccHHHHHHHH
Confidence 356788999999999875 22345566665444333 3323221 111 2344578999999999999999999999
Q ss_pred chHHHHHHhcCCcEEEEEEcccCCCceEEeccCCCCcChHHHHHHHHHHHHhhhccCcEEEEeehhhhhhhhhh--hccc
Q psy7618 103 VRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQMERGIMQNAFRQIFDFKQKEKRHKCIVECCYLELYQGKIR--DLLN 180 (560)
Q Consensus 103 ~~plv~~~l~G~N~~i~aYG~TgSGKTyTm~G~~~~~Giipr~l~~lF~~~~~~~~~~~~v~~s~~e~~~~~~~--dll~ 180 (560)
+.|+|.+++.|.|+.+|+||.|||||||||+|++.++||+||+++.||+.++......+.++..-..+...... .+|.
T Consensus 103 ~~plV~dlLkgqn~LlFTyGVTgSGKTYTm~G~~~~~GIlPR~Ld~iF~siq~~~~~k~~~kp~~s~~~e~~~~~~alL~ 182 (809)
T KOG0247|consen 103 VAPLVKDLLKGQNSLLFTYGVTGSGKTYTMTGTPDRPGILPRALDVIFNSIQGRQAKKPVFKPLRSNLFEIKAEEDALLQ 182 (809)
T ss_pred hHHHHHHHHcccceeEEEeeccCCCceEEeecCCCCCCchHHHHHHHHHHhhceeccCceeccccchHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999776666666544444433332 2221
Q ss_pred cCCCccc-chhhhhh---cccCCCCCCcccchhhh--hhcccccceeeeeeeeehhhhhhhhcCCCCCcccccccccCCC
Q psy7618 181 VSRPTLF-DTKAKLN---IYHGRQSNGTQIFDFKQ--KEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPC 254 (560)
Q Consensus 181 ~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~--~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~~~~~~~~~~~ 254 (560)
..+.... +...... ........+...+.... -+....+.|++||+|||||.|||||.+........
T Consensus 183 lkr~~~~nd~~~ts~~~~~~~~e~~e~~~~~e~~~~~l~~d~~ysV~VSf~EIYN~~iYDLLe~~s~q~~~~-------- 254 (809)
T KOG0247|consen 183 LKREAMLNDRKSTSKAHRQSTPEYAEHIHVIEQPALELDEDIVYSVFVSFVEIYNNYIYDLLEDASFQGKLQ-------- 254 (809)
T ss_pred hhhhhccccccCcchhhccccHHHHhhcchhcccccccCcCcEEEEEeeHHHHHHHHHHHhhccccccchhh--------
Confidence 0100000 0000000 00000000111111100 12455778888888888888888886542110000
Q ss_pred CCCcccccchhHHHHHhhhccccccccccccccccccceeeEeecchhhcccccCCCcccccCCcccceecCCeEEEcCC
Q psy7618 255 KGLRSVTCQSVEEIENCRKKGYKSRKTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQS 334 (560)
Q Consensus 255 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~lei~~~~~~dll~~~~~~~~~~~~~~~~~v~gL~~~~v~s 334 (560)
.......+.++.++|+||++|.|+|
T Consensus 255 -------------------------------------------------------~~~ll~~d~~~~~~Vkgl~~V~Vss 279 (809)
T KOG0247|consen 255 -------------------------------------------------------KLKLLREDTNGNMYVKGLTEVEVSS 279 (809)
T ss_pred -------------------------------------------------------hhhhhhhccCCCeeeccccEEEecc
Confidence 0012345677899999999999999
Q ss_pred HHHHHHHHHHHHhhcccccccCCCCCCCcEEEEEEEEEEEeCC-CCceeEeeeeeeeeccCCcccccccCcchhhHHHhH
Q psy7618 335 VEEIENCRKKGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSK-TGKALIHSKLNLVDLAGSECLQKSNATDIRLKECCE 413 (560)
Q Consensus 335 ~ee~~~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~l~~~~~~-~~~~~~~s~L~~VDLAGSEr~~~s~~~g~r~~E~~~ 413 (560)
.+||+++|+.|.++|+.++|.+|..|||||+||+|.|.+.... ....+..|.|.|||||||||..+++++|.|++||++
T Consensus 280 seEA~~l~~lGqk~r~~asT~lN~~SSRSHsVFtIkl~q~~~~~~s~~i~vSqlsLvDLAGSERt~rtq~sG~RLrEagN 359 (809)
T KOG0247|consen 280 SEEALELFQLGQKRRRVASTKLNANSSRSHSVFTIKLVQAPRSQDSNQITVSQLSLVDLAGSERTNRTQNSGERLREAGN 359 (809)
T ss_pred HHHHHHHHHHHHhhhhhhheeccccccccceeEEEEeeecccccccCceeEEeeeeeecccchhcccccchhHHHHhhcc
Confidence 9999999999999999999999999999999999999887555 345677899999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHhhhCCC-----CCcCCCCCchhhhhccccCCCceEEEEEeeCCCcccHHHHHHHHHHHHHhcccccc
Q psy7618 414 INLSLLAVNKVISSTVAGK-----TYIPYRDSLLTQLLQDSFGGNAKTLMIANIGPAASTYKETLVTLEYANRAKKIKNA 488 (560)
Q Consensus 414 IN~SL~aL~~vI~al~~~~-----~~iPyRdSkLT~lLqdsLgGnskt~mI~~vsP~~~~~~ETl~TL~fa~rak~Ikn~ 488 (560)
||.||++||+||.+|+.++ .+|||||||||++++.+|.|.++.+||+||+|...+|+|+++.|+||+.|+.|.+.
T Consensus 360 INtSLmTLg~Cie~LR~nqk~ks~~~VPyRdSKLThlfq~~f~G~gki~MIV~vnp~~e~YdEnl~vlkFaeiaq~v~v~ 439 (809)
T KOG0247|consen 360 INTSLMTLRRCIDVLRENQKSKSQKIVPYRDSKLTHLFKNYFDGKGKIRMIVCVNPKAEDYDENLNVLKFAEIAQEVEVA 439 (809)
T ss_pred ccHHHHHHHHHHHHHHHHhhhhccccCcchHHHHHHHHHHhcCCCCcEEEEEecCCchhhHHHHHHHHHHHHhccccccc
Confidence 9999999999999998754 68999999999999999999999999999999999999999999999999999877
Q ss_pred ccc
Q psy7618 489 PNI 491 (560)
Q Consensus 489 p~~ 491 (560)
+.+
T Consensus 440 ~~~ 442 (809)
T KOG0247|consen 440 RPV 442 (809)
T ss_pred Ccc
Confidence 655
No 23
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=5.9e-72 Score=582.55 Aligned_cols=330 Identities=46% Similarity=0.674 Sum_probs=291.5
Q ss_pred CeEEEEEeCCCCcchhccCCccEEEEcCCC-ceeEeecCCCCCCCCCCCCceeeeCCccccCCCcchhhhhccchHHHHH
Q psy7618 31 NIKVVVRCRPMNVPERKAHVENVIKIDTTK-KCLSIQYSTDRLKPRQPGKARRFTFDAVYGMQATQTEIYENSVRPMVNH 109 (560)
Q Consensus 31 ~ikV~vRvRP~~~~e~~~~~~~~v~~~~~~-~~v~i~~~~~~~~~~~~~~~~~F~FD~VF~~~a~Q~~vf~~~~~plv~~ 109 (560)
+|+|+|||||+...|...+..+++.+.+.. ..+.+..+. .....+.|.||+||+++++|++||+.++.|+|++
T Consensus 1 ~v~v~vRvrP~~~~e~~~~~~~~~~~~~~~~~~v~~~~~~------~~~~~~~f~fD~vf~~~~~q~~v~~~~~~p~v~~ 74 (335)
T smart00129 1 NIRVVVRVRPLNKREKSRKSPSVVPFDDKDGKTLNVNSPK------NRKEEKKFTFDKVFGATASQEDVFEETAAPLVDS 74 (335)
T ss_pred CcEEEEEcCcCCccchhcCCceEEEEcCCCCCEEEEeCCC------CCCCCeEEecCEEECCCCChHHHHHHHHHHHHHH
Confidence 589999999999999887788888886543 356655432 2356789999999999999999999999999999
Q ss_pred HhcCCcEEEEEEcccCCCceEEeccCCCCcChHHHHHHHHHHHHhhhc-cCcEEEEeehhhhhhhhhhhccccCCCcccc
Q psy7618 110 MLHGYNVTIFAYGQTGTGKTFTMEGSQMERGIMQNAFRQIFDFKQKEK-RHKCIVECCYLELYQGKIRDLLNVSRPTLFD 188 (560)
Q Consensus 110 ~l~G~N~~i~aYG~TgSGKTyTm~G~~~~~Giipr~l~~lF~~~~~~~-~~~~~v~~s~~e~~~~~~~dll~~~~~~~~~ 188 (560)
+++|+|+||||||+|||||||||+|+..++||+||++++||+.+.... ...|.
T Consensus 75 ~~~G~~~~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~~~~~~~-------------------------- 128 (335)
T smart00129 75 VLEGYNATIFAYGQTGSGKTYTMSGTPDSPGIIPRALKDLFEKIDKLEEGWQFQ-------------------------- 128 (335)
T ss_pred HhcCCceeEEEeCCCCCCCceEecCCCCCCCHHHHHHHHHHHHhhhcccCceEE--------------------------
Confidence 999999999999999999999999999999999999999999886543 22333
Q ss_pred hhhhhhcccCCCCCCcccchhhhhhcccccceeeeeeeeehhhhhhhhcCCCCCcccccccccCCCCCCcccccchhHHH
Q psy7618 189 TKAKLNIYHGRQSNGTQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSVEEI 268 (560)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 268 (560)
|.+||+|||+|.++|||++....
T Consensus 129 -------------------------------v~~S~~ei~~e~v~DLL~~~~~~-------------------------- 151 (335)
T smart00129 129 -------------------------------VKVSYLEIYNEKIRDLLNPSPKK-------------------------- 151 (335)
T ss_pred -------------------------------EEEEEEEEECCEEEECcCCCCCC--------------------------
Confidence 44899999999999999754210
Q ss_pred HHhhhccccccccccccccccccceeeEeecchhhcccccCCCcccccCCcccceecCCeEEEcCCHHHHHHHHHHHHhh
Q psy7618 269 ENCRKKGYKSRKTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSVEEIENCRKKGYKS 348 (560)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~v~~s~lei~~~~~~dll~~~~~~~~~~~~~~~~~v~gL~~~~v~s~ee~~~ll~~g~~~ 348 (560)
++|.+ ++.++++++|++++.|.|++|++.++..|.++
T Consensus 152 --------------------------l~i~~-----------------~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~ 188 (335)
T smart00129 152 --------------------------LEIRE-----------------DKKGGVYVKGLTEISVSSFEEVYNLLEKGNKN 188 (335)
T ss_pred --------------------------cEEEE-----------------CCCCCEEecCCEEEEeCCHHHHHHHHHHHHhc
Confidence 33333 34468999999999999999999999999999
Q ss_pred cccccccCCCCCCCcEEEEEEEEEEEe-CCCCceeEeeeeeeeeccCCcccccccCcchhhHHHhHhhhhHHHHHHHHHh
Q psy7618 349 RKTASTYFNDYSSRSHAIFIVTLKVLN-SKTGKALIHSKLNLVDLAGSECLQKSNATDIRLKECCEINLSLLAVNKVISS 427 (560)
Q Consensus 349 R~~~~t~~N~~SSRSH~If~i~l~~~~-~~~~~~~~~s~L~~VDLAGSEr~~~s~~~g~r~~E~~~IN~SL~aL~~vI~a 427 (560)
|.+++|.+|..|||||+||+|++.+.. .........|+|+||||||+|+..+.++.+.+++|+..||+||.+|++||.+
T Consensus 189 R~~~~t~~n~~ssRsH~i~~l~v~~~~~~~~~~~~~~s~l~~VDLaGse~~~~~~~~~~~~~e~~~in~sl~~L~~~l~~ 268 (335)
T smart00129 189 RTVAATKMNEESSRSHAVFTITVESKIKNSSSGSGKASKLNLVDLAGSERASKTGAEGDRLKEAGNINKSLSALGNVINA 268 (335)
T ss_pred cccccCCCCCCCCcceEEEEEEEEEEecCCCCCCEEEEEEEEEECCCCCccccccChhHHHHhhchhhhHHHHHHHHHHH
Confidence 999999999999999999999999762 2233456789999999999999999999999999999999999999999999
Q ss_pred hhC--CCCCcCCCCCchhhhhccccCCCceEEEEEeeCCCcccHHHHHHHHHHHHHhcccccccccc
Q psy7618 428 TVA--GKTYIPYRDSLLTQLLQDSFGGNAKTLMIANIGPAASTYKETLVTLEYANRAKKIKNAPNIN 492 (560)
Q Consensus 428 l~~--~~~~iPyRdSkLT~lLqdsLgGnskt~mI~~vsP~~~~~~ETl~TL~fa~rak~Ikn~p~~n 492 (560)
|+. +..|||||+||||+||+++|+|+++|+||+||||...+++||++||+||+++++|+|.|++|
T Consensus 269 l~~~~~~~~ip~r~S~LT~lL~~~L~g~~~~~~i~~vsp~~~~~~eTl~tL~~a~~~~~i~~~p~~~ 335 (335)
T smart00129 269 LADGQKSRHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSLSNLEETLSTLRFASRAKEIKNKAIVN 335 (335)
T ss_pred HHhcCCCCCCCCcCcHhHHHHHHHcCCCCeEEEEEEcCCCccchHHHHHHHHHHHHHhhcccCCCcC
Confidence 999 46799999999999999999999999999999999999999999999999999999999865
No 24
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=1.6e-70 Score=570.42 Aligned_cols=323 Identities=46% Similarity=0.687 Sum_probs=282.9
Q ss_pred CeEEEEEeCCCCcchhccCCccEEEEcCCCceeEeecCCCCCCCCCCCCceeeeCCccccCCCcchhhhhccchHHHHHH
Q psy7618 31 NIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYGMQATQTEIYENSVRPMVNHM 110 (560)
Q Consensus 31 ~ikV~vRvRP~~~~e~~~~~~~~v~~~~~~~~v~i~~~~~~~~~~~~~~~~~F~FD~VF~~~a~Q~~vf~~~~~plv~~~ 110 (560)
+|+|+||+||+...| ......++.+++. ..+.+.++... .....+.|.||+||+++++|++||+.++.|+|+++
T Consensus 1 ~i~V~vRvrP~~~~~-~~~~~~~~~~~~~-~~v~~~~~~~~----~~~~~~~f~fd~vf~~~~~q~~v~~~~~~~~v~~~ 74 (328)
T cd00106 1 NIRVVVRIRPLNGRE-SKSEESCITVDDN-KTVTLTPPKDG----RKAGPKSFTFDHVFDPNSTQEDVYETTAKPLVESV 74 (328)
T ss_pred CeEEEEEcCCCCccc-ccCCCcEEEECCC-CEEEEecCccc----cCcCceEEECCeEEcCCCCHHHHHHHHHHHHHHHH
Confidence 589999999998776 3345667777764 56666654322 34567899999999999999999999999999999
Q ss_pred hcCCcEEEEEEcccCCCceEEeccCCCCcChHHHHHHHHHHHHhhhc--cCcEEEEeehhhhhhhhhhhccccCCCcccc
Q psy7618 111 LHGYNVTIFAYGQTGTGKTFTMEGSQMERGIMQNAFRQIFDFKQKEK--RHKCIVECCYLELYQGKIRDLLNVSRPTLFD 188 (560)
Q Consensus 111 l~G~N~~i~aYG~TgSGKTyTm~G~~~~~Giipr~l~~lF~~~~~~~--~~~~~v~~s~~e~~~~~~~dll~~~~~~~~~ 188 (560)
++|+|+||||||+|||||||||+|+..++|||||++++||+.+.... ...+.
T Consensus 75 ~~G~~~~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~~~~~~~~-------------------------- 128 (328)
T cd00106 75 LEGYNGTIFAYGQTGSGKTYTMFGSPKDPGIIPRALEDLFNLIDERKEKNKSFS-------------------------- 128 (328)
T ss_pred hCCCceeEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhccccCceEE--------------------------
Confidence 99999999999999999999999999999999999999999887654 23333
Q ss_pred hhhhhhcccCCCCCCcccchhhhhhcccccceeeeeeeeehhhhhhhhcCCCCCcccccccccCCCCCCcccccchhHHH
Q psy7618 189 TKAKLNIYHGRQSNGTQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSVEEI 268 (560)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 268 (560)
|.+||+|||+|+++|||.+.... ..
T Consensus 129 -------------------------------v~~S~~Ei~~e~v~DLL~~~~~~-----~~------------------- 153 (328)
T cd00106 129 -------------------------------VSVSYLEIYNEKVYDLLSPEPPS-----KP------------------- 153 (328)
T ss_pred -------------------------------EEEEEEEEECCEeEECCCCCCCC-----CC-------------------
Confidence 44899999999999999765200 00
Q ss_pred HHhhhccccccccccccccccccceeeEeecchhhcccccCCCcccccCCcccceecCCeEEEcCCHHHHHHHHHHHHhh
Q psy7618 269 ENCRKKGYKSRKTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSVEEIENCRKKGYKS 348 (560)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~v~~s~lei~~~~~~dll~~~~~~~~~~~~~~~~~v~gL~~~~v~s~ee~~~ll~~g~~~ 348 (560)
++|.+ +..+++++.|++++.|.|++|++.++..|.++
T Consensus 154 --------------------------l~i~~-----------------~~~~~~~v~~l~~~~v~s~~e~~~~l~~~~~~ 190 (328)
T cd00106 154 --------------------------LSLRE-----------------DPKGGVYVKGLTEVEVGSAEDALSLLQKGLKN 190 (328)
T ss_pred --------------------------cEEEE-----------------cCCCCEEEeCCEEEEeCCHHHHHHHHHHHHhh
Confidence 33333 33468999999999999999999999999999
Q ss_pred cccccccCCCCCCCcEEEEEEEEEEEeCCCCc-eeEeeeeeeeeccCCcccccccCcchhhHHHhHhhhhHHHHHHHHHh
Q psy7618 349 RKTASTYFNDYSSRSHAIFIVTLKVLNSKTGK-ALIHSKLNLVDLAGSECLQKSNATDIRLKECCEINLSLLAVNKVISS 427 (560)
Q Consensus 349 R~~~~t~~N~~SSRSH~If~i~l~~~~~~~~~-~~~~s~L~~VDLAGSEr~~~s~~~g~r~~E~~~IN~SL~aL~~vI~a 427 (560)
|.+++|.+|..|||||+||+|++...+..... ....|+|+||||||+|+..+.+..+.+++|+..||+||.+|++||.+
T Consensus 191 R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~s~l~~VDLaGse~~~~~~~~~~~~~e~~~in~sl~~L~~vl~~ 270 (328)
T cd00106 191 RTTASTAMNERSSRSHAIFTIHVEQRNTTNDGRSIKSSKLNLVDLAGSERAKKTGAEGDRLKEAKNINKSLSALGNVISA 270 (328)
T ss_pred cCcccCcCCCCcCcCcEEEEEEEEEEecCCCCccEEEEEEEEEECCCCCcccccCCchhhhHhHHhhhhhHHHHHHHHHH
Confidence 99999999999999999999999988665432 36689999999999999999999999999999999999999999999
Q ss_pred hhCCC--CCcCCCCCchhhhhccccCCCceEEEEEeeCCCcccHHHHHHHHHHHHHhc
Q psy7618 428 TVAGK--TYIPYRDSLLTQLLQDSFGGNAKTLMIANIGPAASTYKETLVTLEYANRAK 483 (560)
Q Consensus 428 l~~~~--~~iPyRdSkLT~lLqdsLgGnskt~mI~~vsP~~~~~~ETl~TL~fa~rak 483 (560)
|..++ .|||||+||||+||||+|+|+++|+||+||+|...+++||++||+||+|||
T Consensus 271 l~~~~~~~~ip~r~SkLT~lL~~~l~g~~~t~~I~~vsp~~~~~~eTl~tL~~a~r~~ 328 (328)
T cd00106 271 LSSGQKKKHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSSENYDETLSTLRFASRAK 328 (328)
T ss_pred HHhcCCCCcCCCcCcHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 99998 999999999999999999999999999999999999999999999999986
No 25
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=3.6e-71 Score=576.86 Aligned_cols=323 Identities=42% Similarity=0.670 Sum_probs=275.0
Q ss_pred EeCCCCcchhccCCccEEEEcCCCceeEeecCCCCCCCCCCCCceeeeCCccccCCCcchhhhhccchHHHHHHhcCCcE
Q psy7618 37 RCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNV 116 (560)
Q Consensus 37 RvRP~~~~e~~~~~~~~v~~~~~~~~v~i~~~~~~~~~~~~~~~~~F~FD~VF~~~a~Q~~vf~~~~~plv~~~l~G~N~ 116 (560)
||||++..|...+....+.+.......... ............|.||+||+++++|++||+.++.|+|+++++|+|+
T Consensus 1 RvRP~~~~e~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~ 76 (335)
T PF00225_consen 1 RVRPLNESEKESSAESIVSVDNQDSNQNKQ----SVNSNNSQKEKSFRFDRVFDEDATQEDVYEEVVSPLVDSVLDGYNA 76 (335)
T ss_dssp EEES-CHHHHHTTTEBCEEEETTETEEEEE----ETTEEETTEEEEEEESEEEETTSTHHHHHHHHTHHHHHHHHTT-EE
T ss_pred CcCCCCHHHHhCCCcEEEEecCCccccccc----cccccCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHhhcCCce
Confidence 999999999988877776665321111111 1112234567899999999999999999999999999999999999
Q ss_pred EEEEEcccCCCceEEeccC--CCCcChHHHHHHHHHHHHhhhccC---cEEEEeehhhhhhhhhhhccccCCCcccchhh
Q psy7618 117 TIFAYGQTGTGKTFTMEGS--QMERGIMQNAFRQIFDFKQKEKRH---KCIVECCYLELYQGKIRDLLNVSRPTLFDTKA 191 (560)
Q Consensus 117 ~i~aYG~TgSGKTyTm~G~--~~~~Giipr~l~~lF~~~~~~~~~---~~~v~~s~~e~~~~~~~dll~~~~~~~~~~~~ 191 (560)
||||||+|||||||||+|+ ..++||+||++++||..+...... .|.
T Consensus 77 ~i~ayG~tgSGKT~Tm~G~~~~~~~Gli~~~~~~lf~~~~~~~~~~~~~~~----------------------------- 127 (335)
T PF00225_consen 77 TIFAYGQTGSGKTYTMFGSNDPSEPGLIPRALRDLFSQIEERKEKSGYEFS----------------------------- 127 (335)
T ss_dssp EEEEEESTTSSHHHHHTBSTSTTTBSHHHHHHHHHHHHHHHHTTTSTEEEE-----------------------------
T ss_pred EEEeeccccccccccccccccccccchhhhHHHHHhhhhcccccccccccc-----------------------------
Confidence 9999999999999999999 889999999999999998876532 344
Q ss_pred hhhcccCCCCCCcccchhhhhhcccccceeeeeeeeehhhhhhhhcCCCCCcccccccccCCCCCCcccccchhHHHHHh
Q psy7618 192 KLNIYHGRQSNGTQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSVEEIENC 271 (560)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 271 (560)
|.+||+|||+|+++|||++..... ..
T Consensus 128 ----------------------------v~vS~~EIy~e~v~DLL~~~~~~~---~~----------------------- 153 (335)
T PF00225_consen 128 ----------------------------VSVSYLEIYNEKVYDLLSPNNSKS---RK----------------------- 153 (335)
T ss_dssp ----------------------------EEEEEEEEETTEEEETTSTTSSST---TS-----------------------
T ss_pred ----------------------------ccccchhhhhhhhhhhcCcccccc---cc-----------------------
Confidence 449999999999999998663100 00
Q ss_pred hhccccccccccccccccccceeeEeecchhhcccccCCCcccccCCcc-cceecCCeEEEcCCHHHHHHHHHHHHhhcc
Q psy7618 272 RKKGYKSRKTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKL-TLPCKGLRSVTCQSVEEIENCRKKGYKSRK 350 (560)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~v~~s~lei~~~~~~dll~~~~~~~~~~~~~~-~~~v~gL~~~~v~s~ee~~~ll~~g~~~R~ 350 (560)
.++|++ +... .++|+||+++.|.|++|++.+|..|.++|.
T Consensus 154 ----------------------~l~i~~-----------------~~~~g~~~i~~l~~~~v~s~~~~~~~l~~~~~~R~ 194 (335)
T PF00225_consen 154 ----------------------PLKIRE-----------------DSNKGSVYIKGLTEVEVKSAEEALQLLKKGQKNRR 194 (335)
T ss_dssp ----------------------EBEEEE-----------------ETTTEEEEETTSEEEEESSHHHHHHHHHHHHHHHT
T ss_pred ----------------------ccceee-----------------ccccccceeeccccccccccccccccccchhhccc
Confidence 144444 2222 489999999999999999999999999999
Q ss_pred cccccCCCCCCCcEEEEEEEEEEEeCCCCce---eEeeeeeeeeccCCcccccccC-cchhhHHHhHhhhhHHHHHHHHH
Q psy7618 351 TASTYFNDYSSRSHAIFIVTLKVLNSKTGKA---LIHSKLNLVDLAGSECLQKSNA-TDIRLKECCEINLSLLAVNKVIS 426 (560)
Q Consensus 351 ~~~t~~N~~SSRSH~If~i~l~~~~~~~~~~---~~~s~L~~VDLAGSEr~~~s~~-~g~r~~E~~~IN~SL~aL~~vI~ 426 (560)
+++|.+|..|||||+||+|++.+........ ...|+|+||||||+|+..+.++ .+.+++|+..||+||++|++||.
T Consensus 195 ~~~t~~n~~sSRSH~i~~i~v~~~~~~~~~~~~~~~~s~l~~vDLaGsE~~~~~~~~~~~~~~e~~~in~Sl~~L~~vi~ 274 (335)
T PF00225_consen 195 TASTKMNARSSRSHAIFTIHVEQKDRDPSDDEESVKHSRLTFVDLAGSERLKKSGASDGQRLKESSNINKSLSALGNVIR 274 (335)
T ss_dssp CTSSSCTHHGGGSEEEEEEEEEEEETTTTTEEEEEEEEEEEEEEEEESTGGCGCSSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccceeecceeeeecccccccccccccccccccccceecchhhhhhhhHh
Confidence 9999999999999999999999987665543 5789999999999999999886 48889999999999999999999
Q ss_pred hhhCC--CCCcCCCCCchhhhhccccCCCceEEEEEeeCCCcccHHHHHHHHHHHHHhccc
Q psy7618 427 STVAG--KTYIPYRDSLLTQLLQDSFGGNAKTLMIANIGPAASTYKETLVTLEYANRAKKI 485 (560)
Q Consensus 427 al~~~--~~~iPyRdSkLT~lLqdsLgGnskt~mI~~vsP~~~~~~ETl~TL~fa~rak~I 485 (560)
+|..+ ..|||||+||||+||+|+|||||+|+||+||+|...+++||++||+||+++|+|
T Consensus 275 ~L~~~~~~~~vpyr~SkLT~lL~d~l~g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~I 335 (335)
T PF00225_consen 275 ALAQGSKQSHVPYRDSKLTRLLKDSLGGNSKTILIVCVSPSSEDYEETLSTLRFASRAREI 335 (335)
T ss_dssp HHHCTTSTSSSCGGGSHHHHHTGGGTSSSSEEEEEEEE-SBGGGHHHHHHHHHHHHHHTTE
T ss_pred hhhccccchhhhhhcccccceecccccccccceeEEEcCCccccHHHHHHHHHHHHHHcCC
Confidence 99999 899999999999999999999999999999999999999999999999999987
No 26
>KOG0246|consensus
Probab=100.00 E-value=5.3e-70 Score=562.08 Aligned_cols=333 Identities=34% Similarity=0.499 Sum_probs=290.7
Q ss_pred CCCCCCeEEEEEeCCCCcchhccCCccEEEEcCCCceeEeecCCCCCCCCCCCCceeeeCCccccCCCcchhhhhccchH
Q psy7618 26 HHQDENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYGMQATQTEIYENSVRP 105 (560)
Q Consensus 26 ~~~~~~ikV~vRvRP~~~~e~~~~~~~~v~~~~~~~~v~i~~~~~~~~~~~~~~~~~F~FD~VF~~~a~Q~~vf~~~~~p 105 (560)
...+..|.||||-||++..|......++|+|. ..+++.++.+...+.-++.-..++|.||++||+.++++.||..+++|
T Consensus 204 ~v~ehrI~VCVRKRPLnkkE~~~keiDvisvp-s~~~l~vHEpk~kVDLtkYlEn~~F~FDyaFDe~~sNe~VYrfTa~P 282 (676)
T KOG0246|consen 204 GVNEHRICVCVRKRPLNKKELTKKEIDVISVP-SKNVLVVHEPKLKVDLTKYLENQKFRFDYAFDESASNELVYRFTAKP 282 (676)
T ss_pred CCccceEEEEeecCCCCchhccccccceEecc-ccceEEeeccccccchHHHHhhceEEEeeecccccchHHHHHHhhhH
Confidence 34567899999999999999998889999885 46788888888888888888899999999999999999999999999
Q ss_pred HHHHHhcCCcEEEEEEcccCCCceEEeccCCC------CcChHHHHHHHHHHHHhhhccCcEEEEeehhhhhhhhhhhcc
Q psy7618 106 MVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQM------ERGIMQNAFRQIFDFKQKEKRHKCIVECCYLELYQGKIRDLL 179 (560)
Q Consensus 106 lv~~~l~G~N~~i~aYG~TgSGKTyTm~G~~~------~~Giipr~l~~lF~~~~~~~~~~~~v~~s~~e~~~~~~~dll 179 (560)
||+.+|+|--+|+||||||||||||||.|+.. ..||..++.+++|..+....-..
T Consensus 283 lV~~IF~~G~ATCFAYGQTGSGKT~TMggdfsgk~q~~s~giya~aa~Dvf~~L~~p~Y~~------------------- 343 (676)
T KOG0246|consen 283 LVKTIFEGGMATCFAYGQTGSGKTYTMGGDFSGKAQDCSKGIYALAARDVFRLLRQPTYRK------------------- 343 (676)
T ss_pred HHHHHHhCCceeeeeeccCCCCceeecccccCcccccccccchhhhhhHHHHHhcccchhh-------------------
Confidence 99999999999999999999999999998644 57999999999999876532111
Q ss_pred ccCCCcccchhhhhhcccCCCCCCcccchhhhhhcccccceeeeeeeeehhhhhhhhcCCCCCcccccccccCCCCCCcc
Q psy7618 180 NVSRPTLFDTKAKLNIYHGRQSNGTQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRS 259 (560)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~~~~~~~~~~~~~~~~ 259 (560)
..+.|.++|||||..+++|||+....
T Consensus 344 ------------------------------------~~l~v~~tFFEIYgGKvfDLL~~k~K------------------ 369 (676)
T KOG0246|consen 344 ------------------------------------LDLKVYVTFFEIYGGKVYDLLNDKKK------------------ 369 (676)
T ss_pred ------------------------------------cceEEEEEEEEEeCcchhhhhccccc------------------
Confidence 11234588888888888888865421
Q ss_pred cccchhHHHHHhhhccccccccccccccccccceeeEeecchhhcccccCCCcccccCCcccceecCCeEEEcCCHHHHH
Q psy7618 260 VTCQSVEEIENCRKKGYKSRKTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSVEEIE 339 (560)
Q Consensus 260 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~lei~~~~~~dll~~~~~~~~~~~~~~~~~v~gL~~~~v~s~ee~~ 339 (560)
+. ..++.+..+.|-||++..|.+.+|++
T Consensus 370 -----------------------------------Lr-----------------vLEDg~QQVqVVGLqE~~v~~~eeVl 397 (676)
T KOG0246|consen 370 -----------------------------------LR-----------------VLEDGNQQVQVVGLQEEEVSGVEEVL 397 (676)
T ss_pred -----------------------------------eE-----------------EeecCCceEEEeeceeeeccCHHHHH
Confidence 22 23455668999999999999999999
Q ss_pred HHHHHHHhhcccccccCCCCCCCcEEEEEEEEEEEeCCCCceeEeeeeeeeeccCCcccccccC-cchhhHHHhHhhhhH
Q psy7618 340 NCRKKGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIHSKLNLVDLAGSECLQKSNA-TDIRLKECCEINLSL 418 (560)
Q Consensus 340 ~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~l~~~~~~~~~~~~~s~L~~VDLAGSEr~~~s~~-~g~r~~E~~~IN~SL 418 (560)
.+|..|..-|+++.|..|..|||||+||+|.+... +....++++.||||||+||...+.. ..+...|+..||+||
T Consensus 398 ~lIe~Gns~RtsG~TsANs~SSRSHAvfQIilr~~----~~~k~hGKfSlIDLAGnERGaDts~adRqtRlEGAEINKSL 473 (676)
T KOG0246|consen 398 ELIEKGNSCRTSGQTSANSNSSRSHAVFQIILRKH----GEFKLHGKFSLIDLAGNERGADTSSADRQTRLEGAEINKSL 473 (676)
T ss_pred HHHHhcccccccCcccCcccccccceeEeeeeecC----CcceeEeEEEEEEccCCccCCcccccchhhhhhhhhhhHHH
Confidence 99999999999999999999999999999998653 2245689999999999999977654 456678999999999
Q ss_pred HHHHHHHHhhhCCCCCcCCCCCchhhhhccccCC-CceEEEEEeeCCCcccHHHHHHHHHHHHHhcccccc
Q psy7618 419 LAVNKVISSTVAGKTYIPYRDSLLTQLLQDSFGG-NAKTLMIANIGPAASTYKETLVTLEYANRAKKIKNA 488 (560)
Q Consensus 419 ~aL~~vI~al~~~~~~iPyRdSkLT~lLqdsLgG-nskt~mI~~vsP~~~~~~ETl~TL~fa~rak~Ikn~ 488 (560)
+||..||.||..++.|+|||.||||++|+|||-| ||+|+||+||||+....|.||+|||||+|+|.....
T Consensus 474 LALKECIRaLg~nk~H~PFR~SKLTqVLRDSFIGenSrTcMIA~ISPg~~ScEhTLNTLRYAdRVKeLsv~ 544 (676)
T KOG0246|consen 474 LALKECIRALGRNKSHLPFRGSKLTQVLRDSFIGENSRTCMIATISPGISSCEHTLNTLRYADRVKELSVD 544 (676)
T ss_pred HHHHHHHHHhcCCCCCCCchhhhHHHHHHHhhcCCCCceEEEEEeCCCcchhhhhHHHHHHHHHHHhhcCC
Confidence 9999999999999999999999999999999988 999999999999999999999999999999987644
No 27
>KOG0244|consensus
Probab=100.00 E-value=5.4e-69 Score=585.37 Aligned_cols=341 Identities=40% Similarity=0.533 Sum_probs=294.6
Q ss_pred eCCCCcchhccCCccEEEEcCCCceeEeecCCCCCCCCCCCCceeeeCCccccCCCcchhhhhccchHHHHHHhcCCcEE
Q psy7618 38 CRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVT 117 (560)
Q Consensus 38 vRP~~~~e~~~~~~~~v~~~~~~~~v~i~~~~~~~~~~~~~~~~~F~FD~VF~~~a~Q~~vf~~~~~plv~~~l~G~N~~ 117 (560)
|||+...|...+...|+.+.+....|.+ +...+|+||+||+....|.++|+.+|+|+++.+++|||++
T Consensus 1 vRpl~~~e~~~g~~~c~~~~~~~pqv~i------------g~~~s~t~d~v~~~~~~Q~~~~e~~V~~l~~~lf~gynat 68 (913)
T KOG0244|consen 1 VRPLKQMEEEQGCRRCTEVSPRTPQVAI------------GKDASFTYDKVFLDLESQKEVYESCVRPLREKLFAGYNAT 68 (913)
T ss_pred CCCccchHHHhcchhhcccCCCCCceee------------cCCcceeeeeeccCchHHHHHHHHHHHHHHHHHhhhhcce
Confidence 6999999988888888877766666665 4456799999999999999999999999999999999999
Q ss_pred EEEEcccCCCceEEeccC----CCCcChHHHHHHHHHHHHhhhccCcEEEEeehhhhhhhhhhhccccCCCcccchhhhh
Q psy7618 118 IFAYGQTGTGKTFTMEGS----QMERGIMQNAFRQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKL 193 (560)
Q Consensus 118 i~aYG~TgSGKTyTm~G~----~~~~Giipr~l~~lF~~~~~~~~~~~~v~~s~~e~~~~~~~dll~~~~~~~~~~~~~~ 193 (560)
++|||||||||||||.+. ..+.|+|||++..+|..+.......|.
T Consensus 69 vlaygQtgsgkTytmgt~~~~~~~~~Gvipr~v~~~f~~i~~~~~~~f~------------------------------- 117 (913)
T KOG0244|consen 69 VLAYGQTGSGKTYTMGTNDAPAQDTVGVIPRAVSTLFTRIGKTESFVFR------------------------------- 117 (913)
T ss_pred eeeecccCCCceeecccccccccccCCcCcchHHHHHHHHHhhhcccee-------------------------------
Confidence 999999999999999987 234599999999999988875544343
Q ss_pred hcccCCCCCCcccchhhhhhcccccceeeeeeeeehhhhhhhhcCCCCCcccccccccCCCCCCcccccchhHHHHHhhh
Q psy7618 194 NIYHGRQSNGTQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSVEEIENCRK 273 (560)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 273 (560)
|.++|+|+|++.|+||+.++..- .
T Consensus 118 --------------------------i~vs~vely~e~v~dl~~~~~~~-----~------------------------- 141 (913)
T KOG0244|consen 118 --------------------------ITVSFVELYNEEVLDLLKPSRLK-----A------------------------- 141 (913)
T ss_pred --------------------------eeeeeeeccchhhhhhcChhhhh-----h-------------------------
Confidence 44888999999999998744210 0
Q ss_pred ccccccccccccccccccceeeEeecchhhcccccCCCcccccCCcccceecCCeEEEcCCHHHHHHHHHHHHhhccccc
Q psy7618 274 KGYKSRKTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSVEEIENCRKKGYKSRKTAS 353 (560)
Q Consensus 274 ~~~~~~~~~~~~~~~~v~~s~lei~~~~~~dll~~~~~~~~~~~~~~~~~v~gL~~~~v~s~ee~~~ll~~g~~~R~~~~ 353 (560)
...++. +++++.+.||+++.|.+..++...|..|.-.|++++
T Consensus 142 -------------------------------------~i~~~e-~~g~it~~glte~tv~~~~q~~~~L~~g~~~Rtvas 183 (913)
T KOG0244|consen 142 -------------------------------------NIKLRE-PKGEITIRGLTEKTVRMKLQLLSRLEKGSLERTVAS 183 (913)
T ss_pred -------------------------------------ceeccc-cCCceEEEeehHHHHHHHHHHHHHHHhchHHHHHHH
Confidence 000122 456799999999999999999999999999999999
Q ss_pred ccCCCCCCCcEEEEEEEEEEEeCCCCceeEeeeeeeeeccCCcccccccCcchhhHHHhHhhhhHHHHHHHHHhhhCCCC
Q psy7618 354 TYFNDYSSRSHAIFIVTLKVLNSKTGKALIHSKLNLVDLAGSECLQKSNATDIRLKECCEINLSLLAVNKVISSTVAGKT 433 (560)
Q Consensus 354 t~~N~~SSRSH~If~i~l~~~~~~~~~~~~~s~L~~VDLAGSEr~~~s~~~g~r~~E~~~IN~SL~aL~~vI~al~~~~~ 433 (560)
|+||..|||||+||++.+++..........+++|+|||||||||.++++++|.|++|+.+||.+|++||+||+||...+.
T Consensus 184 TnMN~qssRshAifti~lkq~kk~~~~s~~~sKlhlVDLAGSER~kkT~a~gdrlKEgInIN~gLL~LgnVIsaLg~~kk 263 (913)
T KOG0244|consen 184 TNMNAQSSRSHAIFTITLKQRKKLSKRSSFCSKLHLVDLAGSERVKKTKAEGDRLKEGININGGLLALGNVISALGEAKK 263 (913)
T ss_pred HhcchhhhhhhHHHHHHHHHHHHhhccchhhhhhheeeccccccccccccchhhhhhccCcchHHHHHHHHHHHHHhhhc
Confidence 99999999999999999988654444456689999999999999999999999999999999999999999999999886
Q ss_pred --CcCCCCCchhhhhccccCCCceEEEEEeeCCCcccHHHHHHHHHHHHHhcccccccccccccchhhhcHHH-HHHHHH
Q psy7618 434 --YIPYRDSLLTQLLQDSFGGNAKTLMIANIGPAASTYKETLVTLEYANRAKKIKNAPNINFYREDRCHNEEK-MREKYK 510 (560)
Q Consensus 434 --~iPyRdSkLT~lLqdsLgGnskt~mI~~vsP~~~~~~ETl~TL~fa~rak~Ikn~p~~n~~~~~~~~~~~~-~~~~l~ 510 (560)
||||||||||||||++||||+.|+||+||||+..+++||++||+||.||++|+|+|++|.++....+..++ +++.|+
T Consensus 264 ~~~vpyRdSkltrlLQdslgGns~tlmiaCiSpadsn~~EtlnTl~ya~Rak~iknk~vvN~d~~~~~~~~lK~ql~~l~ 343 (913)
T KOG0244|consen 264 GGEVPYRDSKLTRLLQDSLGGNSDTLMIACISPADSNAQETLNTLRYADRAKQIKNKPVVNQDPKSFEMLKLKAQLEPLQ 343 (913)
T ss_pred CCcccchHHHHHHHHHHHhcCCcceeeeeecChhhhhhhhHHHHHHHhhHHHHhcccccccccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999977665555554 555555
Q ss_pred HHHHH
Q psy7618 511 KALED 515 (560)
Q Consensus 511 ~~l~~ 515 (560)
.++-.
T Consensus 344 ~ell~ 348 (913)
T KOG0244|consen 344 VELLS 348 (913)
T ss_pred HHHHh
Confidence 55533
No 28
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.6e-61 Score=530.13 Aligned_cols=325 Identities=41% Similarity=0.618 Sum_probs=276.0
Q ss_pred CCCCCCCeEEEEEeCCCCcchhccCCccEEEEcCCCceeEeecCCCCCCCCCCCCceeeeCCccccCCCcchhhhhccch
Q psy7618 25 EHHQDENIKVVVRCRPMNVPERKAHVENVIKIDTTKKCLSIQYSTDRLKPRQPGKARRFTFDAVYGMQATQTEIYENSVR 104 (560)
Q Consensus 25 ~~~~~~~ikV~vRvRP~~~~e~~~~~~~~v~~~~~~~~v~i~~~~~~~~~~~~~~~~~F~FD~VF~~~a~Q~~vf~~~~~ 104 (560)
....-.+++++++..|-...+. .+ .......+... .....+|.||+||++.++|++||+.+++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~------~~-~~~~~~~~~~~----------~~~~~~~~fdkvf~~~~~q~~v~e~~~~ 79 (568)
T COG5059 17 NEKSVSDIKSTIRIIPGELGER------LI-NTSKKSHVSLE----------KSKEGTYAFDKVFGPSATQEDVYEETIK 79 (568)
T ss_pred ceeeecCceEEEeecCCCcchh------ee-ecccccccccc----------cccceEEEEeeccCCCCcHHHHHHHhhh
Confidence 3345567889999998544331 11 11111111111 1125689999999999999999999999
Q ss_pred HHHHHHhcCCcEEEEEEcccCCCceEEeccCCCCcChHHHHHHHHHHHHhhhc-cCcEEEEeehhhhhhhhhhhccccCC
Q psy7618 105 PMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQMERGIMQNAFRQIFDFKQKEK-RHKCIVECCYLELYQGKIRDLLNVSR 183 (560)
Q Consensus 105 plv~~~l~G~N~~i~aYG~TgSGKTyTm~G~~~~~Giipr~l~~lF~~~~~~~-~~~~~v~~s~~e~~~~~~~dll~~~~ 183 (560)
|++++++.|||+||||||||||||||||.|...++||||+++..||+.+.... ...+.
T Consensus 80 ~l~~~~l~g~N~TvfayGqTgsgKtyt~~G~~~~~Gii~~~l~~lf~~l~~~~~~~~~~--------------------- 138 (568)
T COG5059 80 PLIDSLLLGYNCTVFAYGQTGSGKTYTMSGTEEEPGIIPLSLKELFSKLEDLSMTKDFA--------------------- 138 (568)
T ss_pred hHHHHHHhcccceEEEEcccCCCceeEeecCccccchHHHHHHHHHHHHHhcccCccee---------------------
Confidence 99999999999999999999999999999999999999999999999877653 22233
Q ss_pred CcccchhhhhhcccCCCCCCcccchhhhhhcccccceeeeeeeeehhhhhhhhcCCCCCcccccccccCCCCCCcccccc
Q psy7618 184 PTLFDTKAKLNIYHGRQSNGTQIFDFKQKEKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQ 263 (560)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~S~~eiy~e~v~DLL~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (560)
|.+||+|||+|+++|||.+....
T Consensus 139 ------------------------------------v~is~lEiYnEk~~DLl~~~~~~--------------------- 161 (568)
T COG5059 139 ------------------------------------VSISYLEIYNEKIYDLLSPNEES--------------------- 161 (568)
T ss_pred ------------------------------------eEeehhHHHhhHHHhhccCcccc---------------------
Confidence 44788888888888888655321
Q ss_pred hhHHHHHhhhccccccccccccccccccceeeEeecchhhcccccCCCcccccCCcccceecCCeEEEcCCHHHHHHHHH
Q psy7618 264 SVEEIENCRKKGYKSRKTAKKRHKCIVECCYLELYQGKIRDLLNVSRPTLFDTKAKLTLPCKGLRSVTCQSVEEIENCRK 343 (560)
Q Consensus 264 s~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~lei~~~~~~dll~~~~~~~~~~~~~~~~~v~gL~~~~v~s~ee~~~ll~ 343 (560)
.....+...++.+.|++++.+.+++|++.+|.
T Consensus 162 ------------------------------------------------~~~~~~~~~~v~v~~l~~~~~~s~ee~l~~l~ 193 (568)
T COG5059 162 ------------------------------------------------LNIREDSLLGVKVAGLTEKHVSSKEEILDLLR 193 (568)
T ss_pred ------------------------------------------------ccccccCCCceEeecceEEecCChHHHHHHHH
Confidence 01133455699999999999999999999999
Q ss_pred HHHhhcccccccCCCCCCCcEEEEEEEEEEEeCCCCceeEeeeeeeeeccCCcccccccCcchhhHHHhHhhhhHHHHHH
Q psy7618 344 KGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIHSKLNLVDLAGSECLQKSNATDIRLKECCEINLSLLAVNK 423 (560)
Q Consensus 344 ~g~~~R~~~~t~~N~~SSRSH~If~i~l~~~~~~~~~~~~~s~L~~VDLAGSEr~~~s~~~g~r~~E~~~IN~SL~aL~~ 423 (560)
.|..+|+++.|.+|..|||||+||++++...+...+... .++|+||||||||++..++..+.|++|+..||+||++||+
T Consensus 194 ~~~~nr~~~~te~n~~ssRshsi~~i~~~~~~~~~~~~~-~~~l~lvDLagSE~~~~~~~~~~r~~E~~~iN~sLl~Lg~ 272 (568)
T COG5059 194 KGEKNRTTASTEINDESSRSHSIFQIELASKNKVSGTSE-TSKLSLVDLAGSERAARTGNRGTRLKEGASINKSLLTLGN 272 (568)
T ss_pred HhhhhcccccchhccccccceEEEEEEEEEeccCcccee-cceEEEEeeccccccchhhcccchhhhhhhhHhhHHHHHH
Confidence 999999999999999999999999999998876655333 4799999999999999999999999999999999999999
Q ss_pred HHHhhhC--CCCCcCCCCCchhhhhccccCCCceEEEEEeeCCCcccHHHHHHHHHHHHHhccccccccccc
Q psy7618 424 VISSTVA--GKTYIPYRDSLLTQLLQDSFGGNAKTLMIANIGPAASTYKETLVTLEYANRAKKIKNAPNINF 493 (560)
Q Consensus 424 vI~al~~--~~~~iPyRdSkLT~lLqdsLgGnskt~mI~~vsP~~~~~~ETl~TL~fa~rak~Ikn~p~~n~ 493 (560)
||.+|.. +..|||||+|||||+||++|||+++|+|||||+|...+++||.+||+||.+|+.|++.+..|.
T Consensus 273 vI~~L~~~~~~~~ipyReskLTRlLq~sLgG~~~~~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~~~~ 344 (568)
T COG5059 273 VINALGDKKKSGHIPYRESKLTRLLQDSLGGNCNTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNS 344 (568)
T ss_pred HHHHHhccccCCccchhhhHHHHHHHHhcCCCccEEEEEEEcCCCCchHHHHHHHHHHHHHhhcCCcccccC
Confidence 9999997 778999999999999999999999999999999999999999999999999999999999995
No 29
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=100.00 E-value=6.9e-52 Score=395.76 Aligned_cols=125 Identities=45% Similarity=0.601 Sum_probs=115.0
Q ss_pred HHHHHHHhhcccccccCCCCCCCcEEEEEEEEEEEeCCC--CceeEeeeeeeeeccCCcccccccCcchhhHHHhHhhhh
Q psy7618 340 NCRKKGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSKT--GKALIHSKLNLVDLAGSECLQKSNATDIRLKECCEINLS 417 (560)
Q Consensus 340 ~ll~~g~~~R~~~~t~~N~~SSRSH~If~i~l~~~~~~~--~~~~~~s~L~~VDLAGSEr~~~s~~~g~r~~E~~~IN~S 417 (560)
.++..|.++|++++|.+|+.|||||+||+|++++.+... ......|+|+||||||||+..+++..+.+++|++.||+|
T Consensus 60 ~ll~~g~~~R~~~~t~~N~~SSRsH~i~~i~v~~~~~~~~~~~~~~~s~l~lVDLAGsE~~~~~~~~~~~~~e~~~in~s 139 (186)
T cd01363 60 DLMDKGNANRTTAATAMNEHSSRSHSVFRIHFGGKNALASATEQPKVGKINLVDLAGSERIDFSGAEGSRLTETANINKS 139 (186)
T ss_pred HHHhhccccccccccCCCCccCcccEEEEEEEEEeecCCCCccceeeeeEEEEEccccccccccCCchhhHHHHHHHhhH
Confidence 345566778999999999999999999999998875543 245568999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhCCCCCcCCCCCchhhhhccccCCCceEEEEEeeCC
Q psy7618 418 LLAVNKVISSTVAGKTYIPYRDSLLTQLLQDSFGGNAKTLMIANIGP 464 (560)
Q Consensus 418 L~aL~~vI~al~~~~~~iPyRdSkLT~lLqdsLgGnskt~mI~~vsP 464 (560)
|++|++||.+|..++.||||||||||+||||+|||||+|+||+||||
T Consensus 140 l~~L~~~i~~l~~~~~~vpyr~SkLT~lL~~~L~g~~~t~~i~~vsP 186 (186)
T cd01363 140 LSTLGNVISALAERDSHVPYRESKLTRLLQDSLGGNSRTLMVACISP 186 (186)
T ss_pred HHHHHHHHHHHhcCCCCCCCcccHHHHHHHHhcCCCCeEEEEEEeCc
Confidence 99999999999999999999999999999999999999999999999
No 30
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=98.20 E-value=9.2e-09 Score=114.02 Aligned_cols=81 Identities=43% Similarity=0.376 Sum_probs=66.7
Q ss_pred HHHhhcccccccCCCCCCCcEEEEEEEEEEEeCCCCceeEeeeeeeeeccCCcccccccCcchhhHHHhHhhhhHHHHHH
Q psy7618 344 KGYKSRKTASTYFNDYSSRSHAIFIVTLKVLNSKTGKALIHSKLNLVDLAGSECLQKSNATDIRLKECCEINLSLLAVNK 423 (560)
Q Consensus 344 ~g~~~R~~~~t~~N~~SSRSH~If~i~l~~~~~~~~~~~~~s~L~~VDLAGSEr~~~s~~~g~r~~E~~~IN~SL~aL~~ 423 (560)
.....+..+.+..|..++++|++|+............. . ++.|||||+||. .+..-|.++++..++|++|..++.
T Consensus 486 ~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~---~-~n~~~~~~~e~~-~s~~~~~~l~~~~~~~k~l~~~~d 560 (568)
T COG5059 486 KASKLRSSASTKLNLRSSRSHSKFRDHLNGSNSSTKEL---S-LNQVDLAGSERK-VSQSVGELLRETQSLNKSLSSLGD 560 (568)
T ss_pred hhccchhhcccchhhhhcccchhhhhcccchhhhhHHH---H-hhhhhccccccc-hhhhhHHHHHhhHhhhhccccchh
Confidence 45667888999999999999999977665433222211 1 799999999999 999999999999999999999999
Q ss_pred HHHhhh
Q psy7618 424 VISSTV 429 (560)
Q Consensus 424 vI~al~ 429 (560)
+|.++.
T Consensus 561 ~~~~~~ 566 (568)
T COG5059 561 VIHALG 566 (568)
T ss_pred hhhhcc
Confidence 998753
No 31
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=94.62 E-value=0.011 Score=57.87 Aligned_cols=50 Identities=26% Similarity=0.521 Sum_probs=31.3
Q ss_pred eeeCCccccCCCcchhhhhccchHHHHHHhcCCcEEEEEEcccCCCceEEecc
Q psy7618 82 RFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 82 ~F~FD~VF~~~a~Q~~vf~~~~~plv~~~l~G~N~~i~aYG~TgSGKTyTm~G 134 (560)
.|+||.-+. ...++..|.. +..+.+.--..+|. +|-||++|+||||-|.+
T Consensus 4 ~~tFdnfv~-g~~N~~a~~~-~~~ia~~~~~~~~~-l~l~G~~G~GKTHLL~A 53 (219)
T PF00308_consen 4 KYTFDNFVV-GESNELAYAA-AKAIAENPGERYNP-LFLYGPSGLGKTHLLQA 53 (219)
T ss_dssp T-SCCCS---TTTTHHHHHH-HHHHHHSTTTSSSE-EEEEESTTSSHHHHHHH
T ss_pred CCccccCCc-CCcHHHHHHH-HHHHHhcCCCCCCc-eEEECCCCCCHHHHHHH
Confidence 599998764 3446666654 44454442222444 78899999999998755
No 32
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.03 E-value=0.025 Score=57.08 Aligned_cols=32 Identities=28% Similarity=0.482 Sum_probs=28.5
Q ss_pred chHHHHHHhcCCcEEEEEEcccCCCceEEecc
Q psy7618 103 VRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 103 ~~plv~~~l~G~N~~i~aYG~TgSGKTyTm~G 134 (560)
..|++..+++--++.|+.-|+||||||.||--
T Consensus 113 lP~i~~~~~~~~~GLILVTGpTGSGKSTTlAa 144 (353)
T COG2805 113 LPPIVRELAESPRGLILVTGPTGSGKSTTLAA 144 (353)
T ss_pred CCHHHHHHHhCCCceEEEeCCCCCcHHHHHHH
Confidence 56778889999999999999999999999743
No 33
>PRK06893 DNA replication initiation factor; Validated
Probab=92.66 E-value=0.068 Score=52.70 Aligned_cols=48 Identities=13% Similarity=0.252 Sum_probs=32.7
Q ss_pred eeeeCCccccCCCcchhhhhccchHHHHHHhcCCcEEEEEEcccCCCceEEecc
Q psy7618 81 RRFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 81 ~~F~FD~VF~~~a~Q~~vf~~~~~plv~~~l~G~N~~i~aYG~TgSGKTyTm~G 134 (560)
..++||..+.... ..- +.-+.+.+-.++|..++-||++|+||||.+.+
T Consensus 11 ~~~~fd~f~~~~~-~~~-----~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a 58 (229)
T PRK06893 11 DDETLDNFYADNN-LLL-----LDSLRKNFIDLQQPFFYIWGGKSSGKSHLLKA 58 (229)
T ss_pred CcccccccccCCh-HHH-----HHHHHHHhhccCCCeEEEECCCCCCHHHHHHH
Confidence 3588998886542 211 22223333457788899999999999998765
No 34
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=92.45 E-value=0.23 Score=53.78 Aligned_cols=90 Identities=20% Similarity=0.290 Sum_probs=56.5
Q ss_pred eeeCCccccCCCcchhhhhccchHHHHHHhcCCcEEEEEEcccCCCceEEeccC---CCCcChH----HHHHHHHHHHHh
Q psy7618 82 RFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGS---QMERGIM----QNAFRQIFDFKQ 154 (560)
Q Consensus 82 ~F~FD~VF~~~a~Q~~vf~~~~~plv~~~l~G~N~~i~aYG~TgSGKTyTm~G~---~~~~Gii----pr~l~~lF~~~~ 154 (560)
.|....-|.|.-+|-+- +..||+.+-+|...-+ --|.|||||||||-.- -..|-++ --...+||....
T Consensus 4 ~F~l~s~f~PaGDQP~A----I~~Lv~gi~~g~~~Qt-LLGvTGSGKTfT~AnVI~~~~rPtLV~AhNKTLAaQLy~Efk 78 (663)
T COG0556 4 PFKLHSPFKPAGDQPEA----IAELVEGIENGLKHQT-LLGVTGSGKTFTMANVIAKVQRPTLVLAHNKTLAAQLYSEFK 78 (663)
T ss_pred ceEeccCCCCCCCcHHH----HHHHHHHHhcCceeeE-EeeeccCCchhHHHHHHHHhCCCeEEEecchhHHHHHHHHHH
Confidence 47777778888888764 4557777777755443 4699999999999641 1111111 112345555554
Q ss_pred hhc-cCcEEEEeehhhhhhhhhh
Q psy7618 155 KEK-RHKCIVECCYLELYQGKIR 176 (560)
Q Consensus 155 ~~~-~~~~~v~~s~~e~~~~~~~ 176 (560)
.-- .+....-+||...|+...+
T Consensus 79 ~fFP~NaVEYFVSYYDYYQPEAY 101 (663)
T COG0556 79 EFFPENAVEYFVSYYDYYQPEAY 101 (663)
T ss_pred HhCcCcceEEEeeeccccCcccc
Confidence 433 4455667889988876544
No 35
>PRK06620 hypothetical protein; Validated
Probab=92.16 E-value=0.055 Score=52.84 Aligned_cols=50 Identities=18% Similarity=0.335 Sum_probs=33.4
Q ss_pred eeeeCCccccCCCcchhhhhccchHHHHHHhcCCc---EEEEEEcccCCCceEEecc
Q psy7618 81 RRFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYN---VTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 81 ~~F~FD~VF~~~a~Q~~vf~~~~~plv~~~l~G~N---~~i~aYG~TgSGKTyTm~G 134 (560)
..|+||..+-. .++...|.. +..+.+. . |+| -.++-||++||||||.+..
T Consensus 11 ~~~tfd~Fvvg-~~N~~a~~~-~~~~~~~-~-~~~~~~~~l~l~Gp~G~GKThLl~a 63 (214)
T PRK06620 11 SKYHPDEFIVS-SSNDQAYNI-IKNWQCG-F-GVNPYKFTLLIKGPSSSGKTYLTKI 63 (214)
T ss_pred CCCCchhhEec-ccHHHHHHH-HHHHHHc-c-ccCCCcceEEEECCCCCCHHHHHHH
Confidence 45899987744 444557765 3333321 1 343 3589999999999998864
No 36
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.00 E-value=0.23 Score=53.84 Aligned_cols=32 Identities=28% Similarity=0.300 Sum_probs=27.8
Q ss_pred chHHHHHHhcCCcEEEEEEcccCCCceEEecc
Q psy7618 103 VRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 103 ~~plv~~~l~G~N~~i~aYG~TgSGKTyTm~G 134 (560)
-...+..+++.-++.|+.-|+||||||.||+.
T Consensus 246 ~~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~ 277 (500)
T COG2804 246 QLARLLRLLNRPQGLILVTGPTGSGKTTTLYA 277 (500)
T ss_pred HHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHH
Confidence 34456788899999999999999999999977
No 37
>PRK12377 putative replication protein; Provisional
Probab=91.77 E-value=0.079 Score=52.95 Aligned_cols=50 Identities=16% Similarity=0.284 Sum_probs=37.5
Q ss_pred eeCCccccCCCcchhhhhccchHHHHHHhcCCcEEEEEEcccCCCceEEecc
Q psy7618 83 FTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 83 F~FD~VF~~~a~Q~~vf~~~~~plv~~~l~G~N~~i~aYG~TgSGKTyTm~G 134 (560)
.+||........|..++.. +..+++.+..+. ..++-||++|+||||.+.+
T Consensus 71 ~tFdnf~~~~~~~~~a~~~-a~~~a~~~~~~~-~~l~l~G~~GtGKThLa~A 120 (248)
T PRK12377 71 CSFANYQVQNDGQRYALSQ-AKSIADELMTGC-TNFVFSGKPGTGKNHLAAA 120 (248)
T ss_pred CCcCCcccCChhHHHHHHH-HHHHHHHHHhcC-CeEEEECCCCCCHHHHHHH
Confidence 4677655455667777765 677777777654 4688999999999999866
No 38
>PRK08116 hypothetical protein; Validated
Probab=90.03 E-value=0.13 Score=52.07 Aligned_cols=52 Identities=27% Similarity=0.445 Sum_probs=37.3
Q ss_pred eeeeCCccccCCCcchhhhhccchHHHHHHhc--CCcEEEEEEcccCCCceEEecc
Q psy7618 81 RRFTFDAVYGMQATQTEIYENSVRPMVNHMLH--GYNVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 81 ~~F~FD~VF~~~a~Q~~vf~~~~~plv~~~l~--G~N~~i~aYG~TgSGKTyTm~G 134 (560)
..++||.-. .+..+...|.. +...++.+.. ..+..++-||++|+||||.+..
T Consensus 80 ~~~tFdnf~-~~~~~~~a~~~-a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~a 133 (268)
T PRK08116 80 RNSTFENFL-FDKGSEKAYKI-ARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAAC 133 (268)
T ss_pred Hhcchhccc-CChHHHHHHHH-HHHHHHHHHhhccCCceEEEECCCCCCHHHHHHH
Confidence 457888644 45566667765 6777776654 3455699999999999998765
No 39
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=90.00 E-value=0.11 Score=58.14 Aligned_cols=51 Identities=24% Similarity=0.402 Sum_probs=34.2
Q ss_pred eeeeCCccccCCCcchhhhhccchHHHHHHhcCCcEEEEEEcccCCCceEEecc
Q psy7618 81 RRFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 81 ~~F~FD~VF~~~a~Q~~vf~~~~~plv~~~l~G~N~~i~aYG~TgSGKTyTm~G 134 (560)
..|+||..+-.. ++...|.. +..+++..-.++|. ||-||.+|+||||.+..
T Consensus 283 ~~~TFDnFvvG~-sN~~A~aa-a~avae~~~~~~Np-L~LyG~sGsGKTHLL~A 333 (617)
T PRK14086 283 PKYTFDTFVIGA-SNRFAHAA-AVAVAEAPAKAYNP-LFIYGESGLGKTHLLHA 333 (617)
T ss_pred CCCCHhhhcCCC-ccHHHHHH-HHHHHhCccccCCc-EEEECCCCCCHHHHHHH
Confidence 468998765333 34445533 45555543346776 89999999999999865
No 40
>PRK07952 DNA replication protein DnaC; Validated
Probab=89.86 E-value=0.17 Score=50.41 Aligned_cols=51 Identities=18% Similarity=0.213 Sum_probs=35.0
Q ss_pred eeeCCccccCCCcchhhhhccchHHHHHHhcCCcEEEEEEcccCCCceEEecc
Q psy7618 82 RFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 82 ~F~FD~VF~~~a~Q~~vf~~~~~plv~~~l~G~N~~i~aYG~TgSGKTyTm~G 134 (560)
..+||.-......|..++.. +...++.+..|. ..++-||.+|+||||.+.+
T Consensus 68 ~~tFdnf~~~~~~q~~al~~-a~~~~~~~~~~~-~~~~l~G~~GtGKThLa~a 118 (244)
T PRK07952 68 NCSFENYRVECEGQMNALSK-ARQYVEEFDGNI-ASFIFSGKPGTGKNHLAAA 118 (244)
T ss_pred CCccccccCCCchHHHHHHH-HHHHHHhhccCC-ceEEEECCCCCCHHHHHHH
Confidence 46777654334556667765 555666554443 3689999999999998766
No 41
>PRK09087 hypothetical protein; Validated
Probab=89.85 E-value=0.14 Score=50.54 Aligned_cols=47 Identities=17% Similarity=0.189 Sum_probs=31.2
Q ss_pred eeeeCCccccCCCcchhhhhccchHHHHHHhcCCcEEEEEEcccCCCceEEec
Q psy7618 81 RRFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTME 133 (560)
Q Consensus 81 ~~F~FD~VF~~~a~Q~~vf~~~~~plv~~~l~G~N~~i~aYG~TgSGKTyTm~ 133 (560)
..|+||.-+..++ +..+|.. +.....-.+-.++-||++||||||.+.
T Consensus 16 ~~~~~~~Fi~~~~-N~~a~~~-----l~~~~~~~~~~l~l~G~~GsGKThLl~ 62 (226)
T PRK09087 16 PAYGRDDLLVTES-NRAAVSL-----VDHWPNWPSPVVVLAGPVGSGKTHLAS 62 (226)
T ss_pred CCCChhceeecCc-hHHHHHH-----HHhcccCCCCeEEEECCCCCCHHHHHH
Confidence 3588998774333 3446663 333222235568999999999999886
No 42
>PRK08084 DNA replication initiation factor; Provisional
Probab=89.62 E-value=0.16 Score=50.35 Aligned_cols=48 Identities=13% Similarity=0.306 Sum_probs=31.6
Q ss_pred eeeeCCccccCCCcchhhhhccchHHHHHHhcCCcEEEEEEcccCCCceEEecc
Q psy7618 81 RRFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 81 ~~F~FD~VF~~~a~Q~~vf~~~~~plv~~~l~G~N~~i~aYG~TgSGKTyTm~G 134 (560)
..|+||.-+.. .+...+.. +..+.. ......++-||++|+||||.+.+
T Consensus 17 ~~~~fd~f~~~--~n~~a~~~-l~~~~~---~~~~~~l~l~Gp~G~GKThLl~a 64 (235)
T PRK08084 17 DDETFASFYPG--DNDSLLAA-LQNALR---QEHSGYIYLWSREGAGRSHLLHA 64 (235)
T ss_pred CcCCccccccC--ccHHHHHH-HHHHHh---CCCCCeEEEECCCCCCHHHHHHH
Confidence 35788876643 55666654 333321 22334789999999999999865
No 43
>PRK06526 transposase; Provisional
Probab=89.13 E-value=0.14 Score=51.28 Aligned_cols=41 Identities=24% Similarity=0.221 Sum_probs=25.3
Q ss_pred ccCCCcchhhhhccchHHHHHHhcCCcEEEEEEcccCCCceEEecc
Q psy7618 89 YGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 89 F~~~a~Q~~vf~~~~~plv~~~l~G~N~~i~aYG~TgSGKTyTm~G 134 (560)
+.+.-++..+..-.....++ .+.| |+.||++|+||||.+.+
T Consensus 77 ~~~~~~~~~~~~l~~~~fi~---~~~n--lll~Gp~GtGKThLa~a 117 (254)
T PRK06526 77 HQRSLKRDTIAHLGTLDFVT---GKEN--VVFLGPPGTGKTHLAIG 117 (254)
T ss_pred cCCCcchHHHHHHhcCchhh---cCce--EEEEeCCCCchHHHHHH
Confidence 33444444444332333332 3444 79999999999999876
No 44
>PRK06835 DNA replication protein DnaC; Validated
Probab=89.08 E-value=0.14 Score=53.32 Aligned_cols=37 Identities=30% Similarity=0.529 Sum_probs=27.3
Q ss_pred hhhhhccchHHHHHHhcCCcEEEEEEcccCCCceEEecc
Q psy7618 96 TEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 96 ~~vf~~~~~plv~~~l~G~N~~i~aYG~TgSGKTyTm~G 134 (560)
..+++. +...++.+-.+. -.|+-||++|+||||.+.+
T Consensus 166 ~~~~~~-~~~f~~~f~~~~-~~Lll~G~~GtGKThLa~a 202 (329)
T PRK06835 166 EKILEK-CKNFIENFDKNN-ENLLFYGNTGTGKTFLSNC 202 (329)
T ss_pred HHHHHH-HHHHHHHHhccC-CcEEEECCCCCcHHHHHHH
Confidence 345543 566777776554 5699999999999998766
No 45
>PRK05642 DNA replication initiation factor; Validated
Probab=89.01 E-value=0.23 Score=49.16 Aligned_cols=47 Identities=19% Similarity=0.415 Sum_probs=29.2
Q ss_pred eeeeCCccccCCCcchhhhhccchHHHHHHhcC---C-cEEEEEEcccCCCceEEecc
Q psy7618 81 RRFTFDAVYGMQATQTEIYENSVRPMVNHMLHG---Y-NVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 81 ~~F~FD~VF~~~a~Q~~vf~~~~~plv~~~l~G---~-N~~i~aYG~TgSGKTyTm~G 134 (560)
..|+||.-+.. . +.. +...++...++ . ...++-||++|+||||-+..
T Consensus 14 ~~~tfdnF~~~-~-~~~-----a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~a 64 (234)
T PRK05642 14 DDATFANYYPG-A-NAA-----ALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQA 64 (234)
T ss_pred CcccccccCcC-C-hHH-----HHHHHHHHhhccccCCCCeEEEECCCCCCHHHHHHH
Confidence 35889987733 2 222 33334333322 2 24689999999999998755
No 46
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=88.98 E-value=0.16 Score=55.20 Aligned_cols=50 Identities=26% Similarity=0.499 Sum_probs=33.9
Q ss_pred ceeeeCCccccCCCcchhhhhccchHHHHHHhcC-CcEEEEEEcccCCCceEEecc
Q psy7618 80 ARRFTFDAVYGMQATQTEIYENSVRPMVNHMLHG-YNVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 80 ~~~F~FD~VF~~~a~Q~~vf~~~~~plv~~~l~G-~N~~i~aYG~TgSGKTyTm~G 134 (560)
...|+||.-+- ..++...|.. +..++++ .| +|. +|-||++|+||||.|..
T Consensus 99 ~~~~tFdnFv~-g~~n~~a~~~-~~~~~~~--~~~~n~-l~lyG~~G~GKTHLl~a 149 (440)
T PRK14088 99 NPDYTFENFVV-GPGNSFAYHA-ALEVAKN--PGRYNP-LFIYGGVGLGKTHLLQS 149 (440)
T ss_pred CCCCccccccc-CCchHHHHHH-HHHHHhC--cCCCCe-EEEEcCCCCcHHHHHHH
Confidence 45689997664 3445556654 4444432 23 665 99999999999998865
No 47
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=88.16 E-value=0.21 Score=54.47 Aligned_cols=53 Identities=23% Similarity=0.372 Sum_probs=33.3
Q ss_pred CceeeeCCccccCCCcchhhhhccchHHHHHHhcCCcEEEEEEcccCCCceEEecc
Q psy7618 79 KARRFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 79 ~~~~F~FD~VF~~~a~Q~~vf~~~~~plv~~~l~G~N~~i~aYG~TgSGKTyTm~G 134 (560)
-...|+||.-.. ...+...|.. +..+.+.--..+| .++-||++|+||||.+..
T Consensus 115 l~~~~tfd~fv~-g~~n~~a~~~-~~~~~~~~~~~~~-~l~l~G~~G~GKThL~~a 167 (450)
T PRK00149 115 LNPKYTFDNFVV-GKSNRLAHAA-ALAVAENPGKAYN-PLFIYGGVGLGKTHLLHA 167 (450)
T ss_pred CCCCCccccccc-CCCcHHHHHH-HHHHHhCcCccCC-eEEEECCCCCCHHHHHHH
Confidence 345688987432 2345556654 4444443222345 478899999999999865
No 48
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=87.85 E-value=0.21 Score=46.38 Aligned_cols=29 Identities=21% Similarity=0.328 Sum_probs=20.8
Q ss_pred HHHHHhcC-CcEEEEEEcccCCCceEEecc
Q psy7618 106 MVNHMLHG-YNVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 106 lv~~~l~G-~N~~i~aYG~TgSGKTyTm~G 134 (560)
+++.+-.+ ....++..++||||||++|..
T Consensus 15 i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~ 44 (184)
T PF04851_consen 15 IINSLENKKEERRVLLNAPTGSGKTIIALA 44 (184)
T ss_dssp HHHHHHTTSGCSEEEEEESTTSSHHHHHHH
T ss_pred HHHHHHhcCCCCCEEEEECCCCCcChhhhh
Confidence 34444444 456677888999999999985
No 49
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=87.80 E-value=0.22 Score=53.49 Aligned_cols=52 Identities=23% Similarity=0.392 Sum_probs=32.1
Q ss_pred ceeeeCCccccCCCcchhhhhccchHHHHHHhcCCcEEEEEEcccCCCceEEecc
Q psy7618 80 ARRFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 80 ~~~F~FD~VF~~~a~Q~~vf~~~~~plv~~~l~G~N~~i~aYG~TgSGKTyTm~G 134 (560)
...|+||.-.- ...+...|.. +..+.+.--..+| .++-||++|+||||.+..
T Consensus 104 ~~~~tfd~fi~-g~~n~~a~~~-~~~~~~~~~~~~n-~l~l~G~~G~GKThL~~a 155 (405)
T TIGR00362 104 NPKYTFDNFVV-GKSNRLAHAA-ALAVAENPGKAYN-PLFIYGGVGLGKTHLLHA 155 (405)
T ss_pred CCCCccccccc-CCcHHHHHHH-HHHHHhCcCccCC-eEEEECCCCCcHHHHHHH
Confidence 45689987432 3445555644 4444443111234 478899999999998754
No 50
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=87.74 E-value=0.39 Score=47.60 Aligned_cols=47 Identities=23% Similarity=0.567 Sum_probs=33.8
Q ss_pred eeCCccccCCCcchhhhhccchHHHHHHhcCCcEE-EEEEcccCCCceEEecc
Q psy7618 83 FTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVT-IFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 83 F~FD~VF~~~a~Q~~vf~~~~~plv~~~l~G~N~~-i~aYG~TgSGKTyTm~G 134 (560)
..+|...+-+...+.+.+++ ..+++|..+. ++.||..|+|||.++-.
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt-----~~Fl~G~pannvLL~G~rGtGKSSlVka 71 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENT-----EQFLQGLPANNVLLWGARGTGKSSLVKA 71 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHH-----HHHHcCCCCcceEEecCCCCCHHHHHHH
Confidence 56677777666666666663 5777886543 67799999999987644
No 51
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=86.93 E-value=0.41 Score=47.73 Aligned_cols=37 Identities=22% Similarity=0.364 Sum_probs=30.0
Q ss_pred hhhhcc-chHHHHHHhcCCcEEEEEEcccCCCceEEec
Q psy7618 97 EIYENS-VRPMVNHMLHGYNVTIFAYGQTGTGKTFTME 133 (560)
Q Consensus 97 ~vf~~~-~~plv~~~l~G~N~~i~aYG~TgSGKTyTm~ 133 (560)
.-|++. ..|+++++.--.-+.|+..|+|||||+.||-
T Consensus 108 Pt~eeL~LPevlk~la~~kRGLviiVGaTGSGKSTtmA 145 (375)
T COG5008 108 PTFEELKLPEVLKDLALAKRGLVIIVGATGSGKSTTMA 145 (375)
T ss_pred CcHHhcCCcHHHHHhhcccCceEEEECCCCCCchhhHH
Confidence 345555 5567788888889999999999999999984
No 52
>PF13245 AAA_19: Part of AAA domain
Probab=86.86 E-value=0.27 Score=39.62 Aligned_cols=27 Identities=33% Similarity=0.391 Sum_probs=19.4
Q ss_pred HHHHhcCCcEEEEEEcccCCCceEEecc
Q psy7618 107 VNHMLHGYNVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 107 v~~~l~G~N~~i~aYG~TgSGKTyTm~G 134 (560)
|..++. -+..++.-|+.|||||+|+..
T Consensus 3 v~~al~-~~~~~vv~g~pGtGKT~~~~~ 29 (76)
T PF13245_consen 3 VRRALA-GSPLFVVQGPPGTGKTTTLAA 29 (76)
T ss_pred HHHHHh-hCCeEEEECCCCCCHHHHHHH
Confidence 445556 445566699999999999644
No 53
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=86.70 E-value=0.44 Score=46.38 Aligned_cols=48 Identities=21% Similarity=0.461 Sum_probs=31.7
Q ss_pred eeeeCCccccCCCcchhhhhccchHHHHHHhcCCcEEEEEEcccCCCceEEecc
Q psy7618 81 RRFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 81 ~~F~FD~VF~~~a~Q~~vf~~~~~plv~~~l~G~N~~i~aYG~TgSGKTyTm~G 134 (560)
..++||.... + .+..+++. ++.++ .......|+-||++|+||||....
T Consensus 10 ~~~~~~~~~~-~-~~~~~~~~-l~~~~---~~~~~~~lll~G~~G~GKT~la~~ 57 (226)
T TIGR03420 10 DDPTFDNFYA-G-GNAELLAA-LRQLA---AGKGDRFLYLWGESGSGKSHLLQA 57 (226)
T ss_pred CchhhcCcCc-C-CcHHHHHH-HHHHH---hcCCCCeEEEECCCCCCHHHHHHH
Confidence 3478887663 2 44555554 22222 256677899999999999998643
No 54
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=86.65 E-value=0.26 Score=53.64 Aligned_cols=50 Identities=24% Similarity=0.429 Sum_probs=31.9
Q ss_pred eeeCCccccCCCcchhhhhccchHHHHHHhcCCcEEEEEEcccCCCceEEecc
Q psy7618 82 RFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 82 ~F~FD~VF~~~a~Q~~vf~~~~~plv~~~l~G~N~~i~aYG~TgSGKTyTm~G 134 (560)
.|+||.-.... +++..|.. +..++..--..+| .+|-||++|+||||.|..
T Consensus 111 ~~tFdnFv~g~-~n~~A~~a-a~~~a~~~~~~~n-pl~i~G~~G~GKTHLl~A 160 (450)
T PRK14087 111 ENTFENFVIGS-SNEQAFIA-VQTVSKNPGISYN-PLFIYGESGMGKTHLLKA 160 (450)
T ss_pred ccchhcccCCC-cHHHHHHH-HHHHHhCcCcccC-ceEEECCCCCcHHHHHHH
Confidence 58999866443 45556643 4444432111244 388999999999998854
No 55
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=86.31 E-value=0.39 Score=50.53 Aligned_cols=46 Identities=30% Similarity=0.390 Sum_probs=27.6
Q ss_pred CccccCCCcchhhhhccchHHHHHHhc-CCcEEEEEEcccCCCceEEe
Q psy7618 86 DAVYGMQATQTEIYENSVRPMVNHMLH-GYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 86 D~VF~~~a~Q~~vf~~~~~plv~~~l~-G~N~~i~aYG~TgSGKTyTm 132 (560)
|++.+.-...++-++.+ ...+..++. +....++-||++|+|||+++
T Consensus 11 ~~~p~~l~gRe~e~~~l-~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 11 DYVPDRIVHRDEQIEEL-AKALRPILRGSRPSNVFIYGKTGTGKTAVT 57 (365)
T ss_pred CCCCCCCCCcHHHHHHH-HHHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 33333333444444442 233444454 45568999999999999874
No 56
>PRK10436 hypothetical protein; Provisional
Probab=85.96 E-value=0.29 Score=53.35 Aligned_cols=29 Identities=31% Similarity=0.389 Sum_probs=24.6
Q ss_pred HHHHHhcCCcEEEEEEcccCCCceEEecc
Q psy7618 106 MVNHMLHGYNVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 106 lv~~~l~G~N~~i~aYG~TgSGKTyTm~G 134 (560)
.+..++..-++.|+..|+||||||.||..
T Consensus 209 ~l~~~~~~~~GliLvtGpTGSGKTTtL~a 237 (462)
T PRK10436 209 QFRQALQQPQGLILVTGPTGSGKTVTLYS 237 (462)
T ss_pred HHHHHHHhcCCeEEEECCCCCChHHHHHH
Confidence 45566778899999999999999999854
No 57
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=85.94 E-value=0.5 Score=46.27 Aligned_cols=49 Identities=16% Similarity=0.342 Sum_probs=30.5
Q ss_pred eeeeCCccccCCCcchhhhhccchHHHHHHhcCCcEEEEEEcccCCCceEEecc
Q psy7618 81 RRFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 81 ~~F~FD~VF~~~a~Q~~vf~~~~~plv~~~l~G~N~~i~aYG~TgSGKTyTm~G 134 (560)
..|+||..+.. .. +.+... ++.++.. .+.+..++-||++|+||||.+..
T Consensus 13 ~~~~~d~f~~~-~~-~~~~~~-l~~~~~~--~~~~~~~~l~G~~G~GKT~La~a 61 (227)
T PRK08903 13 PPPTFDNFVAG-EN-AELVAR-LRELAAG--PVADRFFYLWGEAGSGRSHLLQA 61 (227)
T ss_pred ChhhhcccccC-Cc-HHHHHH-HHHHHhc--cCCCCeEEEECCCCCCHHHHHHH
Confidence 35889988732 22 333332 3443331 23456799999999999998644
No 58
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=85.72 E-value=0.31 Score=51.97 Aligned_cols=53 Identities=25% Similarity=0.453 Sum_probs=32.2
Q ss_pred CceeeeCCccccCCCcchhhhhccchHHHHHHhcCCcEEEEEEcccCCCceEEecc
Q psy7618 79 KARRFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 79 ~~~~F~FD~VF~~~a~Q~~vf~~~~~plv~~~l~G~N~~i~aYG~TgSGKTyTm~G 134 (560)
-...|+||.-.. ..++.-.|.. +..+-+..-.-||- ||-||++|+||||-|..
T Consensus 80 l~~~ytFdnFv~-g~~N~~A~aa-~~~va~~~g~~~np-lfi~G~~GlGKTHLl~A 132 (408)
T COG0593 80 LNPKYTFDNFVV-GPSNRLAYAA-AKAVAENPGGAYNP-LFIYGGVGLGKTHLLQA 132 (408)
T ss_pred CCCCCchhheee-CCchHHHHHH-HHHHHhccCCcCCc-EEEECCCCCCHHHHHHH
Confidence 345699998663 4444555533 22222211112554 88999999999999854
No 59
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=85.14 E-value=0.48 Score=50.47 Aligned_cols=27 Identities=33% Similarity=0.570 Sum_probs=19.7
Q ss_pred HHHHHhc-CCcEEEEEEcccCCCceEEe
Q psy7618 106 MVNHMLH-GYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 106 lv~~~l~-G~N~~i~aYG~TgSGKTyTm 132 (560)
.+...+. +....++-||++|+|||+++
T Consensus 45 ~l~~~~~~~~~~~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 45 ALRPALRGSRPLNVLIYGPPGTGKTTTV 72 (394)
T ss_pred HHHHHhCCCCCCeEEEECCCCCCHHHHH
Confidence 3444444 45567899999999999975
No 60
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=84.97 E-value=0.39 Score=52.85 Aligned_cols=29 Identities=28% Similarity=0.389 Sum_probs=24.6
Q ss_pred HHHHHhcCCcEEEEEEcccCCCceEEecc
Q psy7618 106 MVNHMLHGYNVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 106 lv~~~l~G~N~~i~aYG~TgSGKTyTm~G 134 (560)
.+..++..-++.|+..|+||||||.||..
T Consensus 233 ~l~~~~~~~~GlilitGptGSGKTTtL~a 261 (486)
T TIGR02533 233 RFERLIRRPHGIILVTGPTGSGKTTTLYA 261 (486)
T ss_pred HHHHHHhcCCCEEEEEcCCCCCHHHHHHH
Confidence 45667777888999999999999999854
No 61
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=84.97 E-value=0.35 Score=54.31 Aligned_cols=29 Identities=24% Similarity=0.394 Sum_probs=25.0
Q ss_pred HHHHHhcCCcEEEEEEcccCCCceEEecc
Q psy7618 106 MVNHMLHGYNVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 106 lv~~~l~G~N~~i~aYG~TgSGKTyTm~G 134 (560)
.+..++..-++.|+..|+||||||.||..
T Consensus 307 ~l~~~~~~~~Glilv~G~tGSGKTTtl~a 335 (564)
T TIGR02538 307 LFLEAIHKPQGMVLVTGPTGSGKTVSLYT 335 (564)
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHHHH
Confidence 45677788889999999999999999755
No 62
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=84.82 E-value=0.44 Score=41.83 Aligned_cols=19 Identities=37% Similarity=0.525 Sum_probs=15.6
Q ss_pred CcEEEEEEcccCCCceEEe
Q psy7618 114 YNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 114 ~N~~i~aYG~TgSGKTyTm 132 (560)
....++.+|++|+|||+.+
T Consensus 18 ~~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4456889999999999754
No 63
>PRK08939 primosomal protein DnaI; Reviewed
Probab=84.55 E-value=0.32 Score=50.16 Aligned_cols=51 Identities=12% Similarity=0.231 Sum_probs=33.2
Q ss_pred eeCCccccCCCcchhhhhccchHHHHHHhcC-CcEEEEEEcccCCCceEEecc
Q psy7618 83 FTFDAVYGMQATQTEIYENSVRPMVNHMLHG-YNVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 83 F~FD~VF~~~a~Q~~vf~~~~~plv~~~l~G-~N~~i~aYG~TgSGKTyTm~G 134 (560)
.+||.+-..+..+..++.. +...++....| ..-.|+-||++|+||||.+.+
T Consensus 124 atf~~~~~~~~~~~~~~~~-~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~A 175 (306)
T PRK08939 124 ASLADIDLDDRDRLDALMA-ALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAA 175 (306)
T ss_pred CcHHHhcCCChHHHHHHHH-HHHHHHHhhccCCCCeEEEECCCCCCHHHHHHH
Confidence 4555443223356667764 45666655543 234699999999999999876
No 64
>PRK08727 hypothetical protein; Validated
Probab=84.48 E-value=0.52 Score=46.58 Aligned_cols=19 Identities=32% Similarity=0.394 Sum_probs=16.4
Q ss_pred EEEEEEcccCCCceEEecc
Q psy7618 116 VTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyTm~G 134 (560)
-.|+-||++|+||||.+..
T Consensus 42 ~~l~l~G~~G~GKThL~~a 60 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALA 60 (233)
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 3599999999999998765
No 65
>PRK08181 transposase; Validated
Probab=84.20 E-value=0.65 Score=47.00 Aligned_cols=21 Identities=29% Similarity=0.623 Sum_probs=17.8
Q ss_pred cCCcEEEEEEcccCCCceEEecc
Q psy7618 112 HGYNVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 112 ~G~N~~i~aYG~TgSGKTyTm~G 134 (560)
.|.| |+-||++|+||||-+.+
T Consensus 105 ~~~n--lll~Gp~GtGKTHLa~A 125 (269)
T PRK08181 105 KGAN--LLLFGPPGGGKSHLAAA 125 (269)
T ss_pred cCce--EEEEecCCCcHHHHHHH
Confidence 4554 89999999999999876
No 66
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=84.11 E-value=0.44 Score=48.03 Aligned_cols=29 Identities=28% Similarity=0.408 Sum_probs=21.7
Q ss_pred HHHHHHhcCC---cEEEEEEcccCCCceEEec
Q psy7618 105 PMVNHMLHGY---NVTIFAYGQTGTGKTFTME 133 (560)
Q Consensus 105 plv~~~l~G~---N~~i~aYG~TgSGKTyTm~ 133 (560)
+.+..++... .+.|+..|.||||||.+|.
T Consensus 114 ~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~ 145 (270)
T PF00437_consen 114 EEIAEFLRSAVRGRGNILISGPTGSGKTTLLN 145 (270)
T ss_dssp HHHHHHHHHCHHTTEEEEEEESTTSSHHHHHH
T ss_pred HHHHHHHhhccccceEEEEECCCccccchHHH
Confidence 4444555544 6778899999999999873
No 67
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=84.07 E-value=0.58 Score=46.94 Aligned_cols=51 Identities=18% Similarity=0.224 Sum_probs=34.8
Q ss_pred eeeeCCccccCCCcchhhhhccchHHHHHHhcCCcEEEEEEcccCCCceEEecc
Q psy7618 81 RRFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 81 ~~F~FD~VF~~~a~Q~~vf~~~~~plv~~~l~G~N~~i~aYG~TgSGKTyTm~G 134 (560)
++|.+..+=.+...+..+|.. +..+++.+-+|. .++-||++|+||||-..+
T Consensus 74 k~~~~~d~~~~~~~~~~~l~~-~~~~~~~~~~~~--nl~l~G~~G~GKThLa~A 124 (254)
T COG1484 74 KTFEEFDFEFQPGIDKKALED-LASLVEFFERGE--NLVLLGPPGVGKTHLAIA 124 (254)
T ss_pred CCcccccccCCcchhHHHHHH-HHHHHHHhccCC--cEEEECCCCCcHHHHHHH
Confidence 345444443345567788876 666776666444 457799999999998766
No 68
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=83.72 E-value=0.5 Score=49.59 Aligned_cols=30 Identities=27% Similarity=0.460 Sum_probs=23.4
Q ss_pred HHHHHHhcCCcEEEEEEcccCCCceEEecc
Q psy7618 105 PMVNHMLHGYNVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 105 plv~~~l~G~N~~i~aYG~TgSGKTyTm~G 134 (560)
|.+..++.--.+.|+..|+||||||.||..
T Consensus 112 ~~l~~~~~~~~g~ili~G~tGSGKTT~l~a 141 (343)
T TIGR01420 112 PVLRELAERPRGLILVTGPTGSGKSTTLAS 141 (343)
T ss_pred HHHHHHHhhcCcEEEEECCCCCCHHHHHHH
Confidence 455566655568899999999999999854
No 69
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=83.67 E-value=0.51 Score=50.01 Aligned_cols=29 Identities=24% Similarity=0.312 Sum_probs=21.3
Q ss_pred HHHHHHhcCCcEEEEEEcccCCCceEEecc
Q psy7618 105 PMVNHMLHGYNVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 105 plv~~~l~G~N~~i~aYG~TgSGKTyTm~G 134 (560)
++++.++. .++.|+..|+||||||+||..
T Consensus 140 ~~~~~l~~-~~GlilI~G~TGSGKTT~l~a 168 (372)
T TIGR02525 140 DLFNSLLP-AAGLGLICGETGSGKSTLAAS 168 (372)
T ss_pred HHHHHHHh-cCCEEEEECCCCCCHHHHHHH
Confidence 34444443 567889999999999999744
No 70
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=83.56 E-value=0.34 Score=42.06 Aligned_cols=17 Identities=29% Similarity=0.386 Sum_probs=15.2
Q ss_pred EEEEcccCCCceEEecc
Q psy7618 118 IFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 118 i~aYG~TgSGKTyTm~G 134 (560)
++.+|+||+|||+++..
T Consensus 3 ~~i~~~~G~GKT~~~~~ 19 (144)
T cd00046 3 VLLAAPTGSGKTLAALL 19 (144)
T ss_pred EEEECCCCCchhHHHHH
Confidence 57899999999999876
No 71
>KOG0243|consensus
Probab=83.52 E-value=0.96 Score=52.91 Aligned_cols=25 Identities=32% Similarity=0.565 Sum_probs=21.9
Q ss_pred ccccccceeeEeecchhhcccccCC
Q psy7618 286 HKCIVECCYLELYQGKIRDLLNVSR 310 (560)
Q Consensus 286 ~~~~v~~s~lei~~~~~~dll~~~~ 310 (560)
..|.|.|||||+|+|.++|||+...
T Consensus 180 ~EYsvKVSfLELYNEEl~DLLa~~~ 204 (1041)
T KOG0243|consen 180 AEYSVKVSFLELYNEELTDLLASED 204 (1041)
T ss_pred CeEEEEEEehhhhhHHHHHhcCCcc
Confidence 4588999999999999999997544
No 72
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=83.42 E-value=0.53 Score=49.68 Aligned_cols=26 Identities=23% Similarity=0.397 Sum_probs=20.9
Q ss_pred HHhcCCcEEEEEEcccCCCceEEecc
Q psy7618 109 HMLHGYNVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 109 ~~l~G~N~~i~aYG~TgSGKTyTm~G 134 (560)
.++.-..+.|+..|+||||||.||..
T Consensus 128 ~~~~~~~glilI~GpTGSGKTTtL~a 153 (358)
T TIGR02524 128 DAIAPQEGIVFITGATGSGKSTLLAA 153 (358)
T ss_pred HHHhccCCEEEEECCCCCCHHHHHHH
Confidence 34444678999999999999999744
No 73
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=83.18 E-value=0.39 Score=46.15 Aligned_cols=20 Identities=30% Similarity=0.516 Sum_probs=17.0
Q ss_pred cEEEEEEcccCCCceEEecc
Q psy7618 115 NVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 115 N~~i~aYG~TgSGKTyTm~G 134 (560)
++.|+-.|+||||||.++.-
T Consensus 1 ~GlilI~GptGSGKTTll~~ 20 (198)
T cd01131 1 RGLVLVTGPTGSGKSTTLAA 20 (198)
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 36789999999999999743
No 74
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=82.81 E-value=0.59 Score=42.89 Aligned_cols=27 Identities=26% Similarity=0.455 Sum_probs=20.7
Q ss_pred HHHHHhcCCcEEEEEEcccCCCceEEecc
Q psy7618 106 MVNHMLHGYNVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 106 lv~~~l~G~N~~i~aYG~TgSGKTyTm~G 134 (560)
++..+++|.| ++..|+||||||.....
T Consensus 7 ~~~~i~~~~~--~li~aptGsGKT~~~~~ 33 (169)
T PF00270_consen 7 AIEAIISGKN--VLISAPTGSGKTLAYIL 33 (169)
T ss_dssp HHHHHHTTSE--EEEECSTTSSHHHHHHH
T ss_pred HHHHHHcCCC--EEEECCCCCccHHHHHH
Confidence 3445567777 78999999999998654
No 75
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=82.39 E-value=0.39 Score=42.17 Aligned_cols=18 Identities=28% Similarity=0.449 Sum_probs=12.7
Q ss_pred cEEEEEEcccCCCceEEe
Q psy7618 115 NVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 115 N~~i~aYG~TgSGKTyTm 132 (560)
..+++.+|++|+|||.++
T Consensus 4 ~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ---EEEEE-TTSSHHHHH
T ss_pred CcccEEEcCCCCCHHHHH
Confidence 457899999999999864
No 76
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=82.34 E-value=0.62 Score=49.34 Aligned_cols=26 Identities=46% Similarity=0.664 Sum_probs=19.0
Q ss_pred HHHHhcC-CcEEEEEEcccCCCceEEe
Q psy7618 107 VNHMLHG-YNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 107 v~~~l~G-~N~~i~aYG~TgSGKTyTm 132 (560)
+..++.| -...++.||.||+|||.|+
T Consensus 33 l~~~~~~~~p~n~~iyG~~GTGKT~~~ 59 (366)
T COG1474 33 LAPALRGERPSNIIIYGPTGTGKTATV 59 (366)
T ss_pred HHHHhcCCCCccEEEECCCCCCHhHHH
Confidence 4445544 3444999999999999875
No 77
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=81.95 E-value=0.62 Score=47.00 Aligned_cols=29 Identities=31% Similarity=0.439 Sum_probs=23.0
Q ss_pred HHHHHhcCCcEEEEEEcccCCCceEEecc
Q psy7618 106 MVNHMLHGYNVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 106 lv~~~l~G~N~~i~aYG~TgSGKTyTm~G 134 (560)
.+..++..-.+.|+-.|+||||||.||..
T Consensus 71 ~l~~~~~~~~GlilisG~tGSGKTT~l~a 99 (264)
T cd01129 71 IFRKLLEKPHGIILVTGPTGSGKTTTLYS 99 (264)
T ss_pred HHHHHHhcCCCEEEEECCCCCcHHHHHHH
Confidence 34566666677899999999999999754
No 78
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=80.89 E-value=0.5 Score=46.27 Aligned_cols=18 Identities=39% Similarity=0.613 Sum_probs=14.8
Q ss_pred EEEEEcccCCCceEEecc
Q psy7618 117 TIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 117 ~i~aYG~TgSGKTyTm~G 134 (560)
-+..+|.||||||+|+.-
T Consensus 25 H~~I~G~TGsGKS~~~~~ 42 (229)
T PF01935_consen 25 HIAIFGTTGSGKSNTVKV 42 (229)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 456789999999999754
No 79
>KOG0239|consensus
Probab=80.70 E-value=4.9 Score=45.90 Aligned_cols=64 Identities=34% Similarity=0.705 Sum_probs=46.3
Q ss_pred ceeeeCCccccCCCcchhhhhccchHHHHHHhcCCcEEEEEEcccCCCceEEeccCCCCcChHHHHHHHHHHH
Q psy7618 80 ARRFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQMERGIMQNAFRQIFDF 152 (560)
Q Consensus 80 ~~~F~FD~VF~~~a~Q~~vf~~~~~plv~~~l~G~N~~i~aYG~TgSGKTyTm~G~~~~~Giipr~l~~lF~~ 152 (560)
...+.|+.+......+..-+.. +.+.+..++++++.. +|++|++.+.....|++-+....+++.
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (670)
T KOG0239|consen 25 KKRFELARVYSPSVGQPSLFSD-VQPFVQSALEGLNVK--------AGLTYTMEGSNQPGGLLARLFKELIDL 88 (670)
T ss_pred ccccCccccccccccccccCCc-cccchhhhhhhhhcc--------hhhhhhhhhhcCcchhHHHhhhhcccc
Confidence 3457788777666655555655 455666777776665 899999999998888888777766653
No 80
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=80.29 E-value=0.8 Score=43.98 Aligned_cols=28 Identities=29% Similarity=0.350 Sum_probs=20.5
Q ss_pred HHHHHhcCCcEEEEEEcccCCCceEEec
Q psy7618 106 MVNHMLHGYNVTIFAYGQTGTGKTFTME 133 (560)
Q Consensus 106 lv~~~l~G~N~~i~aYG~TgSGKTyTm~ 133 (560)
.+..++...+..++..|+.||||||+|.
T Consensus 9 a~~~~l~~~~~~~~l~G~aGtGKT~~l~ 36 (196)
T PF13604_consen 9 AVRAILTSGDRVSVLQGPAGTGKTTLLK 36 (196)
T ss_dssp HHHHHHHCTCSEEEEEESTTSTHHHHHH
T ss_pred HHHHHHhcCCeEEEEEECCCCCHHHHHH
Confidence 4455565555556679999999999864
No 81
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=79.64 E-value=0.76 Score=47.29 Aligned_cols=31 Identities=26% Similarity=0.389 Sum_probs=22.5
Q ss_pred chHHHHHHhcCCcEEEEEEcccCCCceEEecc
Q psy7618 103 VRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 103 ~~plv~~~l~G~N~~i~aYG~TgSGKTyTm~G 134 (560)
...++..++.+ ...|+..|+||||||.+|-.
T Consensus 121 ~~~~L~~~v~~-~~~ilI~G~tGSGKTTll~a 151 (299)
T TIGR02782 121 QRDVLREAVLA-RKNILVVGGTGSGKTTLANA 151 (299)
T ss_pred HHHHHHHHHHc-CCeEEEECCCCCCHHHHHHH
Confidence 34556666664 45688999999999998643
No 82
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=79.61 E-value=0.62 Score=40.33 Aligned_cols=19 Identities=32% Similarity=0.454 Sum_probs=16.2
Q ss_pred EEEEEEcccCCCceEEecc
Q psy7618 116 VTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyTm~G 134 (560)
..++-+|++|||||+++..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~ 21 (148)
T smart00382 3 EVILIVGPPGSGKTTLARA 21 (148)
T ss_pred CEEEEECCCCCcHHHHHHH
Confidence 4678999999999998754
No 83
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=79.27 E-value=0.84 Score=47.40 Aligned_cols=29 Identities=28% Similarity=0.397 Sum_probs=20.4
Q ss_pred hHHHHHHhcCCcEEEEEEcccCCCceEEec
Q psy7618 104 RPMVNHMLHGYNVTIFAYGQTGTGKTFTME 133 (560)
Q Consensus 104 ~plv~~~l~G~N~~i~aYG~TgSGKTyTm~ 133 (560)
..++..++.+. ..|+..|.||||||++|.
T Consensus 138 ~~~L~~~v~~~-~~ilI~G~tGSGKTTll~ 166 (319)
T PRK13894 138 REAIIAAVRAH-RNILVIGGTGSGKTTLVN 166 (319)
T ss_pred HHHHHHHHHcC-CeEEEECCCCCCHHHHHH
Confidence 34566666653 556677999999997653
No 84
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=79.26 E-value=1.1 Score=42.44 Aligned_cols=20 Identities=35% Similarity=0.564 Sum_probs=16.3
Q ss_pred cEEEEEEcccCCCceEEecc
Q psy7618 115 NVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 115 N~~i~aYG~TgSGKTyTm~G 134 (560)
.-.++-+|++|+||||...+
T Consensus 47 ~~~l~l~G~~G~GKThLa~a 66 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVA 66 (178)
T ss_dssp --EEEEEESTTSSHHHHHHH
T ss_pred CeEEEEEhhHhHHHHHHHHH
Confidence 34589999999999998766
No 85
>PRK06921 hypothetical protein; Provisional
Probab=79.15 E-value=1 Score=45.55 Aligned_cols=32 Identities=25% Similarity=0.337 Sum_probs=22.7
Q ss_pred chHHHHHHhc---CCcEEEEEEcccCCCceEEecc
Q psy7618 103 VRPMVNHMLH---GYNVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 103 ~~plv~~~l~---G~N~~i~aYG~TgSGKTyTm~G 134 (560)
+...++.+-. +....|+-||++|+||||.+..
T Consensus 102 ~~~~~~~f~~~~~~~~~~l~l~G~~G~GKThLa~a 136 (266)
T PRK06921 102 AVEYVKDFEKIQESRKNSIALLGQPGSGKTHLLTA 136 (266)
T ss_pred HHHHHHHHHHhcccCCCeEEEECCCCCcHHHHHHH
Confidence 4455555432 2345689999999999998866
No 86
>PF12846 AAA_10: AAA-like domain
Probab=78.98 E-value=0.65 Score=46.91 Aligned_cols=20 Identities=35% Similarity=0.571 Sum_probs=16.9
Q ss_pred cEEEEEEcccCCCceEEecc
Q psy7618 115 NVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 115 N~~i~aYG~TgSGKTyTm~G 134 (560)
|..++..|.||||||++|..
T Consensus 1 n~h~~i~G~tGsGKT~~~~~ 20 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKN 20 (304)
T ss_pred CCeEEEECCCCCcHHHHHHH
Confidence 56688999999999988754
No 87
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=78.72 E-value=1.2 Score=44.67 Aligned_cols=25 Identities=28% Similarity=0.284 Sum_probs=18.5
Q ss_pred HHhcCCcEEEEEEcccCCCceEEec
Q psy7618 109 HMLHGYNVTIFAYGQTGTGKTFTME 133 (560)
Q Consensus 109 ~~l~G~N~~i~aYG~TgSGKTyTm~ 133 (560)
..+......++-+|++|+|||+++.
T Consensus 37 ~~~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 37 YGLSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred HHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 3344445678889999999997753
No 88
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=77.89 E-value=1.2 Score=48.59 Aligned_cols=53 Identities=21% Similarity=0.307 Sum_probs=33.9
Q ss_pred CceeeeCCccccCCCcchhhhhccchHHHHHH--hcC--CcEEEEEEcccCCCceEEecc
Q psy7618 79 KARRFTFDAVYGMQATQTEIYENSVRPMVNHM--LHG--YNVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 79 ~~~~F~FD~VF~~~a~Q~~vf~~~~~plv~~~--l~G--~N~~i~aYG~TgSGKTyTm~G 134 (560)
-...|+||.-.-. .+++..|.. +..+.+.. ..| +|. ++-||++|+||||.+..
T Consensus 104 l~~~~tFdnFv~g-~~N~~a~~~-a~~~a~~~~~~~~~~~np-l~L~G~~G~GKTHLl~A 160 (445)
T PRK12422 104 LDPLMTFANFLVT-PENDLPHRI-LQEFTKVSEQGKGFPFNP-IYLFGPEGSGKTHLMQA 160 (445)
T ss_pred CCccccccceeeC-CcHHHHHHH-HHHHHhccccccCCCCce-EEEEcCCCCCHHHHHHH
Confidence 3457999986643 345555543 45454332 223 454 67899999999998765
No 89
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=75.97 E-value=1.6 Score=50.70 Aligned_cols=29 Identities=31% Similarity=0.463 Sum_probs=20.8
Q ss_pred HHHHHHhc--CCcEEEEEEcccCCCceEEec
Q psy7618 105 PMVNHMLH--GYNVTIFAYGQTGTGKTFTME 133 (560)
Q Consensus 105 plv~~~l~--G~N~~i~aYG~TgSGKTyTm~ 133 (560)
.++..++. |-+.+||.||++|+|||.|+.
T Consensus 769 sfL~paIkgsgpnnvLYIyG~PGTGKTATVK 799 (1164)
T PTZ00112 769 GFLESGIKQSGSNQILYISGMPGTGKTATVY 799 (1164)
T ss_pred HHHHHHHhcCCCCceEEEECCCCCCHHHHHH
Confidence 34444443 455678899999999998863
No 90
>PF13479 AAA_24: AAA domain
Probab=75.89 E-value=1.1 Score=43.64 Aligned_cols=20 Identities=35% Similarity=0.640 Sum_probs=17.0
Q ss_pred cEEEEEEcccCCCceEEecc
Q psy7618 115 NVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 115 N~~i~aYG~TgSGKTyTm~G 134 (560)
+..++.||++|+|||++...
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~ 22 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAAS 22 (213)
T ss_pred ceEEEEECCCCCCHHHHHHh
Confidence 45789999999999987655
No 91
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=75.71 E-value=0.94 Score=43.58 Aligned_cols=17 Identities=47% Similarity=0.589 Sum_probs=14.8
Q ss_pred EEEEEcccCCCceEEec
Q psy7618 117 TIFAYGQTGTGKTFTME 133 (560)
Q Consensus 117 ~i~aYG~TgSGKTyTm~ 133 (560)
.|+-.|+||+|||.|+.
T Consensus 3 vi~lvGptGvGKTTt~a 19 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIA 19 (196)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCchHhHHH
Confidence 57889999999999954
No 92
>KOG0247|consensus
Probab=74.48 E-value=0.77 Score=51.46 Aligned_cols=28 Identities=25% Similarity=0.331 Sum_probs=24.6
Q ss_pred ccccccccccceeeEeecchhhcccccC
Q psy7618 282 AKKRHKCIVECCYLELYQGKIRDLLNVS 309 (560)
Q Consensus 282 ~~~~~~~~v~~s~lei~~~~~~dll~~~ 309 (560)
......|.||+||+|||++-+||||...
T Consensus 220 l~~d~~ysV~VSf~EIYN~~iYDLLe~~ 247 (809)
T KOG0247|consen 220 LDEDIVYSVFVSFVEIYNNYIYDLLEDA 247 (809)
T ss_pred cCcCcEEEEEeeHHHHHHHHHHHhhccc
Confidence 3577899999999999999999999743
No 93
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=74.47 E-value=1.3 Score=46.14 Aligned_cols=28 Identities=25% Similarity=0.420 Sum_probs=20.5
Q ss_pred HHHHHHhcCCcEEEEEEcccCCCceEEec
Q psy7618 105 PMVNHMLHGYNVTIFAYGQTGTGKTFTME 133 (560)
Q Consensus 105 plv~~~l~G~N~~i~aYG~TgSGKTyTm~ 133 (560)
.++..++.+. ..|+..|.||||||.+|-
T Consensus 135 ~~L~~~v~~~-~nilI~G~tGSGKTTll~ 162 (323)
T PRK13833 135 SVIRSAIDSR-LNIVISGGTGSGKTTLAN 162 (323)
T ss_pred HHHHHHHHcC-CeEEEECCCCCCHHHHHH
Confidence 4555555543 357899999999999873
No 94
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=74.39 E-value=1.3 Score=41.94 Aligned_cols=30 Identities=23% Similarity=0.306 Sum_probs=21.4
Q ss_pred chHHHHHHhcCCcEEEEEEcccCCCceEEec
Q psy7618 103 VRPMVNHMLHGYNVTIFAYGQTGTGKTFTME 133 (560)
Q Consensus 103 ~~plv~~~l~G~N~~i~aYG~TgSGKTyTm~ 133 (560)
..+++..++.. ...++-.|+||||||.+|-
T Consensus 14 ~~~~l~~~v~~-g~~i~I~G~tGSGKTTll~ 43 (186)
T cd01130 14 QAAYLWLAVEA-RKNILISGGTGSGKTTLLN 43 (186)
T ss_pred HHHHHHHHHhC-CCEEEEECCCCCCHHHHHH
Confidence 44556555554 3457889999999998763
No 95
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=74.34 E-value=1.4 Score=38.17 Aligned_cols=15 Identities=33% Similarity=0.550 Sum_probs=13.3
Q ss_pred EEEEEcccCCCceEE
Q psy7618 117 TIFAYGQTGTGKTFT 131 (560)
Q Consensus 117 ~i~aYG~TgSGKTyT 131 (560)
.|+-.|++|||||+.
T Consensus 1 vI~I~G~~gsGKST~ 15 (121)
T PF13207_consen 1 VIIISGPPGSGKSTL 15 (121)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred CEEEECCCCCCHHHH
Confidence 478999999999975
No 96
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=73.58 E-value=2.9 Score=44.22 Aligned_cols=19 Identities=37% Similarity=0.651 Sum_probs=15.5
Q ss_pred cEEEEEEcccCCCceEEec
Q psy7618 115 NVTIFAYGQTGTGKTFTME 133 (560)
Q Consensus 115 N~~i~aYG~TgSGKTyTm~ 133 (560)
...|+-||++|+|||++.-
T Consensus 156 p~gvLL~GppGtGKT~lak 174 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAK 174 (364)
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3458899999999998763
No 97
>PRK09183 transposase/IS protein; Provisional
Probab=73.46 E-value=1.6 Score=43.84 Aligned_cols=21 Identities=33% Similarity=0.438 Sum_probs=16.7
Q ss_pred cCCcEEEEEEcccCCCceEEecc
Q psy7618 112 HGYNVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 112 ~G~N~~i~aYG~TgSGKTyTm~G 134 (560)
.|.| |+-+|++|+||||.+.+
T Consensus 101 ~~~~--v~l~Gp~GtGKThLa~a 121 (259)
T PRK09183 101 RNEN--IVLLGPSGVGKTHLAIA 121 (259)
T ss_pred cCCe--EEEEeCCCCCHHHHHHH
Confidence 4554 56799999999998765
No 98
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=73.45 E-value=1.6 Score=42.08 Aligned_cols=27 Identities=30% Similarity=0.443 Sum_probs=17.2
Q ss_pred HHHHhcCCcEEEEEEcccCCCceEEecc
Q psy7618 107 VNHMLHGYNVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 107 v~~~l~G~N~~i~aYG~TgSGKTyTm~G 134 (560)
|..++.--. ..+..|+.|||||+|+..
T Consensus 10 i~~~~~~~~-~~~i~GpPGTGKT~~l~~ 36 (236)
T PF13086_consen 10 IQSALSSNG-ITLIQGPPGTGKTTTLAS 36 (236)
T ss_dssp HHHHCTSSE--EEEE-STTSSHHHHHHH
T ss_pred HHHHHcCCC-CEEEECCCCCChHHHHHH
Confidence 344443333 567799999999988765
No 99
>KOG0989|consensus
Probab=73.37 E-value=1.9 Score=44.05 Aligned_cols=33 Identities=30% Similarity=0.333 Sum_probs=22.2
Q ss_pred ccchHHHHHHhcC-CcEEEEEEcccCCCceEEec
Q psy7618 101 NSVRPMVNHMLHG-YNVTIFAYGQTGTGKTFTME 133 (560)
Q Consensus 101 ~~~~plv~~~l~G-~N~~i~aYG~TgSGKTyTm~ 133 (560)
+.+..++...+.+ .--..+-||+.|+|||.|..
T Consensus 42 e~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStal 75 (346)
T KOG0989|consen 42 EHVVQVLKNALLRRILPHYLFYGPPGTGKTSTAL 75 (346)
T ss_pred HHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHH
Confidence 3334445555555 33457889999999999963
No 100
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=72.66 E-value=1.1 Score=43.11 Aligned_cols=28 Identities=29% Similarity=0.475 Sum_probs=19.9
Q ss_pred HHHHHHhcCCcEEEEEEcccCCCceEEe
Q psy7618 105 PMVNHMLHGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 105 plv~~~l~G~N~~i~aYG~TgSGKTyTm 132 (560)
.+.+.+-.|.+.+++-||+.|+|||+.|
T Consensus 10 ~l~~~l~~~~~~~~~l~G~rg~GKTsLl 37 (234)
T PF01637_consen 10 KLKELLESGPSQHILLYGPRGSGKTSLL 37 (234)
T ss_dssp HHHHCHHH--SSEEEEEESTTSSHHHHH
T ss_pred HHHHHHHhhcCcEEEEEcCCcCCHHHHH
Confidence 3444344566889999999999999865
No 101
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=72.60 E-value=1.8 Score=45.78 Aligned_cols=37 Identities=22% Similarity=0.538 Sum_probs=27.2
Q ss_pred CCcchhhhhccchHHHHHHhcCCcEEEEEEcccCCCceEEe
Q psy7618 92 QATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 92 ~a~Q~~vf~~~~~plv~~~l~G~N~~i~aYG~TgSGKTyTm 132 (560)
+..|+.+|+.++..+ .......+|.-|+-|+||||.+
T Consensus 3 n~eQ~~~~~~v~~~~----~~~~~~~~fv~G~~GtGKs~l~ 39 (364)
T PF05970_consen 3 NEEQRRVFDTVIEAI----ENEEGLNFFVTGPAGTGKSFLI 39 (364)
T ss_pred CHHHHHHHHHHHHHH----HccCCcEEEEEcCCCCChhHHH
Confidence 356899998854433 3344456788999999999986
No 102
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=72.51 E-value=1.5 Score=38.22 Aligned_cols=15 Identities=47% Similarity=0.585 Sum_probs=13.2
Q ss_pred EEEEcccCCCceEEe
Q psy7618 118 IFAYGQTGTGKTFTM 132 (560)
Q Consensus 118 i~aYG~TgSGKTyTm 132 (560)
|+-||+.|+|||+..
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 678999999999874
No 103
>PHA00729 NTP-binding motif containing protein
Probab=72.18 E-value=2.6 Score=41.48 Aligned_cols=32 Identities=22% Similarity=0.291 Sum_probs=23.9
Q ss_pred chHHHHHHhcCCcEEEEEEcccCCCceEEecc
Q psy7618 103 VRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 103 ~~plv~~~l~G~N~~i~aYG~TgSGKTyTm~G 134 (560)
++.+++.+..|-=..|+.+|.+|+||||....
T Consensus 5 ~k~~~~~l~~~~f~nIlItG~pGvGKT~LA~a 36 (226)
T PHA00729 5 AKKIVSAYNNNGFVSAVIFGKQGSGKTTYALK 36 (226)
T ss_pred HHHHHHHHhcCCeEEEEEECCCCCCHHHHHHH
Confidence 45566666655445799999999999997654
No 104
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=71.63 E-value=1.7 Score=38.68 Aligned_cols=16 Identities=31% Similarity=0.495 Sum_probs=13.7
Q ss_pred EEEEEcccCCCceEEe
Q psy7618 117 TIFAYGQTGTGKTFTM 132 (560)
Q Consensus 117 ~i~aYG~TgSGKTyTm 132 (560)
.|+..|++|||||+..
T Consensus 1 lii~~G~pgsGKSt~a 16 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLA 16 (143)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 3789999999999863
No 105
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=71.14 E-value=0.93 Score=42.23 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=12.7
Q ss_pred hcCCcEEEEEEcccCCCceEEe
Q psy7618 111 LHGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 111 l~G~N~~i~aYG~TgSGKTyTm 132 (560)
..|...+++.+|.+|+|||+.+
T Consensus 20 ~~~~~~~~ll~G~~G~GKT~ll 41 (185)
T PF13191_consen 20 QSGSPRNLLLTGESGSGKTSLL 41 (185)
T ss_dssp SS-----EEE-B-TTSSHHHHH
T ss_pred HcCCCcEEEEECCCCCCHHHHH
Confidence 3566788999999999999873
No 106
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=70.87 E-value=1.8 Score=45.24 Aligned_cols=29 Identities=28% Similarity=0.346 Sum_probs=20.4
Q ss_pred hHHHHHHhcCCcEEEEEEcccCCCceEEec
Q psy7618 104 RPMVNHMLHGYNVTIFAYGQTGTGKTFTME 133 (560)
Q Consensus 104 ~plv~~~l~G~N~~i~aYG~TgSGKTyTm~ 133 (560)
..++..++.+. ..|+..|+||||||.+|-
T Consensus 150 ~~~L~~~v~~~-~nili~G~tgSGKTTll~ 178 (332)
T PRK13900 150 KEFLEHAVISK-KNIIISGGTSTGKTTFTN 178 (332)
T ss_pred HHHHHHHHHcC-CcEEEECCCCCCHHHHHH
Confidence 34555555443 447889999999999873
No 107
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=70.56 E-value=2.1 Score=44.47 Aligned_cols=28 Identities=25% Similarity=0.336 Sum_probs=21.0
Q ss_pred hHHHHHHhcCCcEEEEEEcccCCCceEEe
Q psy7618 104 RPMVNHMLHGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 104 ~plv~~~l~G~N~~i~aYG~TgSGKTyTm 132 (560)
..++-.++.+. +.|+..|.||||||.++
T Consensus 163 a~~L~~av~~r-~NILisGGTGSGKTTlL 190 (355)
T COG4962 163 AKFLRRAVGIR-CNILISGGTGSGKTTLL 190 (355)
T ss_pred HHHHHHHHhhc-eeEEEeCCCCCCHHHHH
Confidence 34444555555 78999999999999886
No 108
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=70.29 E-value=4.3 Score=39.85 Aligned_cols=42 Identities=21% Similarity=0.273 Sum_probs=28.6
Q ss_pred ccCCCcchhhhhccchHHHHHHhc-C-CcEEEEEEcccCCCceEE
Q psy7618 89 YGMQATQTEIYENSVRPMVNHMLH-G-YNVTIFAYGQTGTGKTFT 131 (560)
Q Consensus 89 F~~~a~Q~~vf~~~~~plv~~~l~-G-~N~~i~aYG~TgSGKTyT 131 (560)
|++-..|+++-.. .+.+++.+.. | .=..++-||+.|.|||..
T Consensus 23 L~efiGQ~~l~~~-l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTL 66 (233)
T PF05496_consen 23 LDEFIGQEHLKGN-LKILIRAAKKRGEALDHMLFYGPPGLGKTTL 66 (233)
T ss_dssp CCCS-S-HHHHHH-HHHHHHHHHCTTS---EEEEESSTTSSHHHH
T ss_pred HHHccCcHHHHhh-hHHHHHHHHhcCCCcceEEEECCCccchhHH
Confidence 4566789999877 6777777764 3 234688999999999853
No 109
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=70.17 E-value=2.1 Score=44.26 Aligned_cols=43 Identities=21% Similarity=0.362 Sum_probs=26.1
Q ss_pred eCCccccCCCcchhhhhccchHHHHHHhcCCcEEEEEEcccCCCceEEecc
Q psy7618 84 TFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 84 ~FD~VF~~~a~Q~~vf~~~~~plv~~~l~G~N~~i~aYG~TgSGKTyTm~G 134 (560)
+||.+.+ |+++.+. +...+-.|....++-||++|+|||++...
T Consensus 13 ~~~~~~g----~~~~~~~----L~~~~~~~~~~~lll~Gp~GtGKT~la~~ 55 (337)
T PRK12402 13 LLEDILG----QDEVVER----LSRAVDSPNLPHLLVQGPPGSGKTAAVRA 55 (337)
T ss_pred cHHHhcC----CHHHHHH----HHHHHhCCCCceEEEECCCCCCHHHHHHH
Confidence 4666653 4554433 22222244434588899999999998643
No 110
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=69.44 E-value=2.5 Score=40.96 Aligned_cols=19 Identities=42% Similarity=0.604 Sum_probs=13.7
Q ss_pred CcEEEEEEcccCCCceEEe
Q psy7618 114 YNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 114 ~N~~i~aYG~TgSGKTyTm 132 (560)
.+-.+++.|+.||||||.-
T Consensus 18 ~~~~v~~~G~AGTGKT~LA 36 (205)
T PF02562_consen 18 NNDLVIVNGPAGTGKTFLA 36 (205)
T ss_dssp H-SEEEEE--TTSSTTHHH
T ss_pred hCCeEEEECCCCCcHHHHH
Confidence 5568999999999999863
No 111
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=69.26 E-value=2.3 Score=43.51 Aligned_cols=44 Identities=18% Similarity=0.209 Sum_probs=26.7
Q ss_pred ccCCCcchhhhhccchHHHHHHhc--CCcEEEEEEcccCCCceEEec
Q psy7618 89 YGMQATQTEIYENSVRPMVNHMLH--GYNVTIFAYGQTGTGKTFTME 133 (560)
Q Consensus 89 F~~~a~Q~~vf~~~~~plv~~~l~--G~N~~i~aYG~TgSGKTyTm~ 133 (560)
|++-..|+++.+. +..++..... +.-..++-||++|+|||+...
T Consensus 3 ~~~~iG~~~~~~~-l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~ 48 (305)
T TIGR00635 3 LAEFIGQEKVKEQ-LQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAH 48 (305)
T ss_pred HHHHcCHHHHHHH-HHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHH
Confidence 3444567777765 4444443322 222346779999999997653
No 112
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=69.17 E-value=2.8 Score=44.22 Aligned_cols=51 Identities=20% Similarity=0.346 Sum_probs=37.6
Q ss_pred eeeeCCccccCCCcchhhhhccchHHHHHHhc----CCcEEEEEEcccCCCceEE
Q psy7618 81 RRFTFDAVYGMQATQTEIYENSVRPMVNHMLH----GYNVTIFAYGQTGTGKTFT 131 (560)
Q Consensus 81 ~~F~FD~VF~~~a~Q~~vf~~~~~plv~~~l~----G~N~~i~aYG~TgSGKTyT 131 (560)
.++.||.+.+.-.--..+.+.++..++++++. -.---|+-||+.|+|||+.
T Consensus 110 ~~~~f~~~~g~~~~~p~f~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGcGKTll 164 (413)
T PLN00020 110 RTRSFDNLVGGYYIAPAFMDKVAVHIAKNFLALPNIKVPLILGIWGGKGQGKSFQ 164 (413)
T ss_pred hhcchhhhcCccccCHHHHHHHHHHHHhhhhhccCCCCCeEEEeeCCCCCCHHHH
Confidence 45777877766666667777777777877774 2334578899999999986
No 113
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=68.85 E-value=2.4 Score=39.09 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=17.9
Q ss_pred HHhcCCcEEEEEEcccCCCceEEecc
Q psy7618 109 HMLHGYNVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 109 ~~l~G~N~~i~aYG~TgSGKTyTm~G 134 (560)
.++++. ..++..|++|||||.++..
T Consensus 19 ~~~~~~-~~~~i~~~~GsGKT~~~~~ 43 (201)
T smart00487 19 ALLSGL-RDVILAAPTGSGKTLAALL 43 (201)
T ss_pred HHHcCC-CcEEEECCCCCchhHHHHH
Confidence 344442 4567889999999998765
No 114
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=68.59 E-value=1.8 Score=43.94 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=16.7
Q ss_pred CCcEEEEEEcccCCCceEEecc
Q psy7618 113 GYNVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 113 G~N~~i~aYG~TgSGKTyTm~G 134 (560)
-.++.++..|..|||||+||..
T Consensus 11 ~~~~~~lV~a~AGSGKT~~l~~ 32 (315)
T PF00580_consen 11 STEGPLLVNAGAGSGKTTTLLE 32 (315)
T ss_dssp S-SSEEEEEE-TTSSHHHHHHH
T ss_pred CCCCCEEEEeCCCCCchHHHHH
Confidence 3677888889999999999654
No 115
>KOG0242|consensus
Probab=68.46 E-value=2.3 Score=48.56 Aligned_cols=26 Identities=42% Similarity=0.680 Sum_probs=23.1
Q ss_pred ccccccceeeEeecchhhcccccCCC
Q psy7618 286 HKCIVECCYLELYQGKIRDLLNVSRP 311 (560)
Q Consensus 286 ~~~~v~~s~lei~~~~~~dll~~~~~ 311 (560)
..|.+.+||+|||+|.|+|||+...+
T Consensus 131 r~f~v~vSYlEIYNE~I~DLL~~~~~ 156 (675)
T KOG0242|consen 131 REFSVRVSYLEIYNERIRDLLNPDGG 156 (675)
T ss_pred ceeEEEEEEEEEeccccccccCCCCC
Confidence 56899999999999999999987654
No 116
>PRK13764 ATPase; Provisional
Probab=68.40 E-value=2.2 Score=47.93 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=18.6
Q ss_pred hcCCcEEEEEEcccCCCceEEecc
Q psy7618 111 LHGYNVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 111 l~G~N~~i~aYG~TgSGKTyTm~G 134 (560)
+......|+..|+||||||+++..
T Consensus 253 l~~~~~~ILIsG~TGSGKTTll~A 276 (602)
T PRK13764 253 LEERAEGILIAGAPGAGKSTFAQA 276 (602)
T ss_pred HHhcCCEEEEECCCCCCHHHHHHH
Confidence 334445589999999999999754
No 117
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=68.30 E-value=1.6 Score=41.94 Aligned_cols=18 Identities=28% Similarity=0.527 Sum_probs=13.8
Q ss_pred EEEEEcccCCCceEEecc
Q psy7618 117 TIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 117 ~i~aYG~TgSGKTyTm~G 134 (560)
-++.+|+||||||.+|..
T Consensus 40 h~li~G~tgsGKS~~l~~ 57 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLRT 57 (205)
T ss_dssp SEEEE--TTSSHHHHHHH
T ss_pred eEEEEcCCCCCccHHHHH
Confidence 578999999999998755
No 118
>PRK06547 hypothetical protein; Provisional
Probab=68.23 E-value=3.7 Score=38.59 Aligned_cols=29 Identities=24% Similarity=0.383 Sum_probs=19.7
Q ss_pred hHHHHHHhcCCcEEEEEEcccCCCceEEe
Q psy7618 104 RPMVNHMLHGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 104 ~plv~~~l~G~N~~i~aYG~TgSGKTyTm 132 (560)
..++..+..+.--.|..+|.+|||||+.-
T Consensus 4 ~~~~~~~~~~~~~~i~i~G~~GsGKTt~a 32 (172)
T PRK06547 4 ALIAARLCGGGMITVLIDGRSGSGKTTLA 32 (172)
T ss_pred HHHHHHhhcCCCEEEEEECCCCCCHHHHH
Confidence 33445555555556777799999999763
No 119
>KOG0246|consensus
Probab=68.12 E-value=3.7 Score=45.00 Aligned_cols=19 Identities=21% Similarity=0.282 Sum_probs=12.3
Q ss_pred cCCcEE--EEEEcccCCCceE
Q psy7618 112 HGYNVT--IFAYGQTGTGKTF 130 (560)
Q Consensus 112 ~G~N~~--i~aYG~TgSGKTy 130 (560)
-|..++ -++.|.-=|||-.
T Consensus 298 YGQTGSGKT~TMggdfsgk~q 318 (676)
T KOG0246|consen 298 YGQTGSGKTYTMGGDFSGKAQ 318 (676)
T ss_pred eccCCCCceeecccccCcccc
Confidence 455544 4556777788877
No 120
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=67.74 E-value=3.2 Score=44.48 Aligned_cols=51 Identities=27% Similarity=0.475 Sum_probs=31.8
Q ss_pred eeeCCccccCCCcchhhhhccchHHHH-HHhc--C--CcEEEEEEcccCCCceEEe
Q psy7618 82 RFTFDAVYGMQATQTEIYENSVRPMVN-HMLH--G--YNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 82 ~F~FD~VF~~~a~Q~~vf~~~~~plv~-~~l~--G--~N~~i~aYG~TgSGKTyTm 132 (560)
.++|+.|-+.+..-+++-+.+..|+.. ..+. | ....|+-||++|+|||+..
T Consensus 141 ~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 141 DVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHH
Confidence 356777766555445555444445542 2333 2 3456889999999999875
No 121
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=67.37 E-value=1.9 Score=45.32 Aligned_cols=30 Identities=23% Similarity=0.357 Sum_probs=20.6
Q ss_pred hHHHHHHhcCCcEEEEEEcccCCCceEEecc
Q psy7618 104 RPMVNHMLHGYNVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 104 ~plv~~~l~G~N~~i~aYG~TgSGKTyTm~G 134 (560)
..++..++. ....|+..|+||||||.+|-.
T Consensus 152 ~~~l~~~v~-~~~nilI~G~tGSGKTTll~a 181 (344)
T PRK13851 152 EAFLHACVV-GRLTMLLCGPTGSGKTTMSKT 181 (344)
T ss_pred HHHHHHHHH-cCCeEEEECCCCccHHHHHHH
Confidence 344544443 234578899999999998744
No 122
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=67.21 E-value=5.7 Score=45.46 Aligned_cols=89 Identities=19% Similarity=0.269 Sum_probs=52.8
Q ss_pred eeCCccccCCCcchhhhhccchHHHHHHhcCCcEEEEEEcccCCCceEEeccCC---CCcChH----HHHHHHHHHHHhh
Q psy7618 83 FTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQ---MERGIM----QNAFRQIFDFKQK 155 (560)
Q Consensus 83 F~FD~VF~~~a~Q~~vf~~~~~plv~~~l~G~N~~i~aYG~TgSGKTyTm~G~~---~~~Gii----pr~l~~lF~~~~~ 155 (560)
|....=|.|.-.|..-|+. +++.+-+|...- ..+|.||||||+||-.-- ..|-|| ......|++.+..
T Consensus 2 f~~~~~~~~~~~Q~~ai~~----l~~~~~~~~~~~-~l~Gvtgs~kt~~~a~~~~~~~~p~Lvi~~n~~~A~ql~~el~~ 76 (655)
T TIGR00631 2 FKLHSPFQPAGDQPKAIAK----LVEGLTDGEKHQ-TLLGVTGSGKTFTMANVIAQVNRPTLVIAHNKTLAAQLYNEFKE 76 (655)
T ss_pred ceeccCCCCChHHHHHHHH----HHHhhhcCCCcE-EEECCCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHH
Confidence 4444557888889888876 555555664333 378999999999986521 112121 1233444444433
Q ss_pred hc-cCcEEEEeehhhhhhhhhh
Q psy7618 156 EK-RHKCIVECCYLELYQGKIR 176 (560)
Q Consensus 156 ~~-~~~~~v~~s~~e~~~~~~~ 176 (560)
-- ......-+||...|+...+
T Consensus 77 f~p~~~V~~f~sy~d~y~pe~y 98 (655)
T TIGR00631 77 FFPENAVEYFVSYYDYYQPEAY 98 (655)
T ss_pred hCCCCeEEEEeeecccCCcccc
Confidence 32 3335666788888876544
No 123
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=66.66 E-value=1.5 Score=37.51 Aligned_cols=15 Identities=40% Similarity=0.760 Sum_probs=13.1
Q ss_pred EEEEcccCCCceEEe
Q psy7618 118 IFAYGQTGTGKTFTM 132 (560)
Q Consensus 118 i~aYG~TgSGKTyTm 132 (560)
|+-||++|.|||+.+
T Consensus 1 I~i~G~~G~GKS~l~ 15 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLA 15 (107)
T ss_pred CEEECCCCCCHHHHH
Confidence 578999999999865
No 124
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=66.41 E-value=2.4 Score=39.83 Aligned_cols=16 Identities=31% Similarity=0.432 Sum_probs=14.2
Q ss_pred EEEEEEcccCCCceEE
Q psy7618 116 VTIFAYGQTGTGKTFT 131 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyT 131 (560)
+.++-+|+||+|||++
T Consensus 4 ~~~ll~GpsGvGKT~l 19 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTEL 19 (171)
T ss_dssp EEEEEESSTTSSHHHH
T ss_pred EEEEEECCCCCCHHHH
Confidence 5789999999999985
No 125
>KOG0926|consensus
Probab=66.04 E-value=3.6 Score=46.98 Aligned_cols=19 Identities=37% Similarity=0.574 Sum_probs=16.4
Q ss_pred CcEEEEEEcccCCCceEEe
Q psy7618 114 YNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 114 ~N~~i~aYG~TgSGKTyTm 132 (560)
.|-.++.+|+||||||.-+
T Consensus 270 ~n~vvIIcGeTGsGKTTQv 288 (1172)
T KOG0926|consen 270 ENPVVIICGETGSGKTTQV 288 (1172)
T ss_pred cCCeEEEecCCCCCccccc
Confidence 4567889999999999987
No 126
>PRK13342 recombination factor protein RarA; Reviewed
Probab=65.76 E-value=4 Score=43.99 Aligned_cols=41 Identities=22% Similarity=0.327 Sum_probs=26.6
Q ss_pred CCcchhhhhccchHHHHHHhcCCcEEEEEEcccCCCceEEec
Q psy7618 92 QATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTME 133 (560)
Q Consensus 92 ~a~Q~~vf~~~~~plv~~~l~G~N~~i~aYG~TgSGKTyTm~ 133 (560)
-..|+.+... ..++...+-.+.-..++-||++|+|||+...
T Consensus 14 ~vGq~~~v~~-~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 14 VVGQEHLLGP-GKPLRRMIEAGRLSSMILWGPPGTGKTTLAR 54 (413)
T ss_pred hcCcHHHhCc-chHHHHHHHcCCCceEEEECCCCCCHHHHHH
Confidence 3456666654 3444444445555577779999999997653
No 127
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=64.77 E-value=2.7 Score=43.96 Aligned_cols=24 Identities=38% Similarity=0.787 Sum_probs=21.3
Q ss_pred cccccccceeeEeecchhhccccc
Q psy7618 285 RHKCIVECCYLELYQGKIRDLLNV 308 (560)
Q Consensus 285 ~~~~~v~~s~lei~~~~~~dll~~ 308 (560)
...|.|++||+|||+|+++|||+.
T Consensus 131 ~~~~~v~~S~~EIyne~v~DLL~~ 154 (337)
T cd01373 131 GLKFLCKCSFLEIYNEQITDLLDP 154 (337)
T ss_pred CceEEEEEEEEeecCCEeeeCCCC
Confidence 457889999999999999999964
No 128
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=64.60 E-value=2.3 Score=43.30 Aligned_cols=19 Identities=42% Similarity=0.455 Sum_probs=15.7
Q ss_pred EEEEEEcccCCCceEEecc
Q psy7618 116 VTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyTm~G 134 (560)
..|.-.|+||+|||+|+..
T Consensus 195 ~vi~~vGptGvGKTTt~~k 213 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAK 213 (282)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3566779999999999765
No 129
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=64.43 E-value=2.8 Score=36.33 Aligned_cols=15 Identities=40% Similarity=0.397 Sum_probs=12.9
Q ss_pred EEEEcccCCCceEEe
Q psy7618 118 IFAYGQTGTGKTFTM 132 (560)
Q Consensus 118 i~aYG~TgSGKTyTm 132 (560)
|+-.|.+|||||+..
T Consensus 1 I~i~G~~GsGKtTia 15 (129)
T PF13238_consen 1 IGISGIPGSGKTTIA 15 (129)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred CEEECCCCCCHHHHH
Confidence 678999999999864
No 130
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=64.38 E-value=3.4 Score=45.85 Aligned_cols=30 Identities=33% Similarity=0.552 Sum_probs=23.3
Q ss_pred chHHHHHHhcCCc--EEEEEEcccCCCceEEe
Q psy7618 103 VRPMVNHMLHGYN--VTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 103 ~~plv~~~l~G~N--~~i~aYG~TgSGKTyTm 132 (560)
|+..++..+.|.. ..++.+||+|+|||.|+
T Consensus 31 V~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv 62 (519)
T PF03215_consen 31 VRSWLEEMFSGSSPKRILLLTGPSGCGKTTTV 62 (519)
T ss_pred HHHHHHHHhccCCCcceEEEECCCCCCHHHHH
Confidence 5666666666653 56889999999999997
No 131
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=64.35 E-value=2.7 Score=44.89 Aligned_cols=20 Identities=35% Similarity=0.468 Sum_probs=17.0
Q ss_pred cEEEEEEcccCCCceEEecc
Q psy7618 115 NVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 115 N~~i~aYG~TgSGKTyTm~G 134 (560)
...|+.+|+||+|||.|+.-
T Consensus 174 ~~vi~lvGptGvGKTTT~aK 193 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAK 193 (388)
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 46789999999999999743
No 132
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=64.27 E-value=2.5 Score=42.27 Aligned_cols=18 Identities=39% Similarity=0.680 Sum_probs=14.6
Q ss_pred cEEEEEEcccCCCceEEe
Q psy7618 115 NVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 115 N~~i~aYG~TgSGKTyTm 132 (560)
--.|+-||++|+|||++-
T Consensus 151 PknVLFyGppGTGKTm~A 168 (368)
T COG1223 151 PKNVLFYGPPGTGKTMMA 168 (368)
T ss_pred cceeEEECCCCccHHHHH
Confidence 346789999999998764
No 133
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=63.86 E-value=3.4 Score=42.49 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=17.4
Q ss_pred cCC-cEEEEEEcccCCCceEEecc
Q psy7618 112 HGY-NVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 112 ~G~-N~~i~aYG~TgSGKTyTm~G 134 (560)
.|. ...++-||++|+|||+.+..
T Consensus 39 ~~~~~~~lll~G~~G~GKT~la~~ 62 (316)
T PHA02544 39 KGRIPNMLLHSPSPGTGKTTVAKA 62 (316)
T ss_pred cCCCCeEEEeeCcCCCCHHHHHHH
Confidence 553 45677799999999998643
No 134
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=63.44 E-value=3.4 Score=43.38 Aligned_cols=22 Identities=41% Similarity=0.534 Sum_probs=20.1
Q ss_pred ccccceeeEeecchhhcccccC
Q psy7618 288 CIVECCYLELYQGKIRDLLNVS 309 (560)
Q Consensus 288 ~~v~~s~lei~~~~~~dll~~~ 309 (560)
|.|++||+|||+|.++|||+..
T Consensus 130 ~~v~~S~~EIyne~v~DLL~~~ 151 (345)
T cd01368 130 YSVFVSYVEIYNNYIYDLLEDS 151 (345)
T ss_pred eeEEEEEEEEeCCEeEeCCCCc
Confidence 7899999999999999999754
No 135
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=63.08 E-value=3 Score=42.83 Aligned_cols=17 Identities=41% Similarity=0.663 Sum_probs=14.2
Q ss_pred CcEEEEEEcccCCCceE
Q psy7618 114 YNVTIFAYGQTGTGKTF 130 (560)
Q Consensus 114 ~N~~i~aYG~TgSGKTy 130 (560)
..+.|+..|+||||||+
T Consensus 96 ~KSNILLiGPTGsGKTl 112 (408)
T COG1219 96 SKSNILLIGPTGSGKTL 112 (408)
T ss_pred eeccEEEECCCCCcHHH
Confidence 34568999999999985
No 136
>PRK10536 hypothetical protein; Provisional
Probab=63.07 E-value=3.8 Score=41.10 Aligned_cols=42 Identities=21% Similarity=0.317 Sum_probs=29.3
Q ss_pred eeeCCccccCCCcchhhhhccchHHHHHHhcCCcEEEEEEcccCCCceEEec
Q psy7618 82 RFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTME 133 (560)
Q Consensus 82 ~F~FD~VF~~~a~Q~~vf~~~~~plv~~~l~G~N~~i~aYG~TgSGKTyTm~ 133 (560)
.|.|..|-+-+..|..... .+.+ +..++..|++||||||...
T Consensus 51 ~~~~~~i~p~n~~Q~~~l~--------al~~--~~lV~i~G~aGTGKT~La~ 92 (262)
T PRK10536 51 SRDTSPILARNEAQAHYLK--------AIES--KQLIFATGEAGCGKTWISA 92 (262)
T ss_pred hcCCccccCCCHHHHHHHH--------HHhc--CCeEEEECCCCCCHHHHHH
Confidence 4666777766666665443 2233 3489999999999999753
No 137
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=62.89 E-value=5.5 Score=43.25 Aligned_cols=16 Identities=44% Similarity=0.781 Sum_probs=13.6
Q ss_pred EEEEEcccCCCceEEe
Q psy7618 117 TIFAYGQTGTGKTFTM 132 (560)
Q Consensus 117 ~i~aYG~TgSGKTyTm 132 (560)
.|+-||++|+|||.+.
T Consensus 219 gVLL~GPPGTGKT~LA 234 (438)
T PTZ00361 219 GVILYGPPGTGKTLLA 234 (438)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778999999999764
No 138
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=62.87 E-value=3.7 Score=49.83 Aligned_cols=29 Identities=28% Similarity=0.307 Sum_probs=20.3
Q ss_pred HHHHHHhcCCcEEEEEEcccCCCceEEecc
Q psy7618 105 PMVNHMLHGYNVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 105 plv~~~l~G~N~~i~aYG~TgSGKTyTm~G 134 (560)
.+++.+-+|....++ ..+||||||+||++
T Consensus 424 ai~~a~~~g~r~~Ll-~maTGSGKT~tai~ 452 (1123)
T PRK11448 424 AVEKAIVEGQREILL-AMATGTGKTRTAIA 452 (1123)
T ss_pred HHHHHHHhccCCeEE-EeCCCCCHHHHHHH
Confidence 334444567665444 48999999999876
No 139
>KOG3859|consensus
Probab=62.57 E-value=4.6 Score=40.63 Aligned_cols=28 Identities=32% Similarity=0.612 Sum_probs=23.2
Q ss_pred HHH-HHHhcCCcEEEEEEcccCCCceEEe
Q psy7618 105 PMV-NHMLHGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 105 plv-~~~l~G~N~~i~aYG~TgSGKTyTm 132 (560)
.|| .++-+||...|+|.|.||-|||..|
T Consensus 31 QLV~ksv~~GF~FNilCvGETg~GKsTLm 59 (406)
T KOG3859|consen 31 QLVNKSVSQGFCFNILCVGETGLGKSTLM 59 (406)
T ss_pred HHHHHHHhcCceEEEEEeccCCccHHHHH
Confidence 355 3556999999999999999999765
No 140
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=62.17 E-value=3.9 Score=43.12 Aligned_cols=25 Identities=44% Similarity=0.705 Sum_probs=22.0
Q ss_pred cccccccceeeEeecchhhcccccC
Q psy7618 285 RHKCIVECCYLELYQGKIRDLLNVS 309 (560)
Q Consensus 285 ~~~~~v~~s~lei~~~~~~dll~~~ 309 (560)
...|.|++||+|||+|.++|||+..
T Consensus 134 ~~~~~v~~S~~EIy~e~v~DLL~~~ 158 (356)
T cd01365 134 NLSYEVEVSYMEIYNEKVRDLLNPK 158 (356)
T ss_pred CceEEEEEEEEEEECCeeeeCCCCC
Confidence 4578899999999999999999754
No 141
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=62.05 E-value=3.6 Score=43.04 Aligned_cols=24 Identities=42% Similarity=0.649 Sum_probs=21.6
Q ss_pred cccccccceeeEeecchhhccccc
Q psy7618 285 RHKCIVECCYLELYQGKIRDLLNV 308 (560)
Q Consensus 285 ~~~~~v~~s~lei~~~~~~dll~~ 308 (560)
...+.|++||+|||+|.++|||+.
T Consensus 132 ~~~~~v~vS~~EIyne~v~DLL~~ 155 (338)
T cd01370 132 DKEFEVSLSYLEIYNETIRDLLSP 155 (338)
T ss_pred CceEEEEEEEEEEECCEEEECCCC
Confidence 467889999999999999999974
No 142
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=61.81 E-value=5.4 Score=43.49 Aligned_cols=23 Identities=35% Similarity=0.587 Sum_probs=18.3
Q ss_pred HHHHhcCCcEEEEEEcccCCCceEE
Q psy7618 107 VNHMLHGYNVTIFAYGQTGTGKTFT 131 (560)
Q Consensus 107 v~~~l~G~N~~i~aYG~TgSGKTyT 131 (560)
+..+++|.| +++.++||||||.+
T Consensus 35 i~~~l~g~d--vi~~a~TGsGKT~a 57 (460)
T PRK11776 35 LPAILAGKD--VIAQAKTGSGKTAA 57 (460)
T ss_pred HHHHhcCCC--EEEECCCCCcHHHH
Confidence 345678888 67888999999965
No 143
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=61.50 E-value=6.1 Score=37.48 Aligned_cols=23 Identities=35% Similarity=0.609 Sum_probs=17.7
Q ss_pred HHHHhcCCcEEEEEEcccCCCceEE
Q psy7618 107 VNHMLHGYNVTIFAYGQTGTGKTFT 131 (560)
Q Consensus 107 v~~~l~G~N~~i~aYG~TgSGKTyT 131 (560)
++.+++|.| ++..++||+|||.+
T Consensus 30 ~~~~~~~~~--~li~~~TG~GKT~~ 52 (203)
T cd00268 30 IPPLLSGRD--VIGQAQTGSGKTAA 52 (203)
T ss_pred HHHHhcCCc--EEEECCCCCcHHHH
Confidence 344455877 58889999999977
No 144
>KOG0245|consensus
Probab=60.88 E-value=3.1 Score=48.52 Aligned_cols=26 Identities=38% Similarity=0.710 Sum_probs=23.3
Q ss_pred cccccccccceeeEeecchhhccccc
Q psy7618 283 KKRHKCIVECCYLELYQGKIRDLLNV 308 (560)
Q Consensus 283 ~~~~~~~v~~s~lei~~~~~~dll~~ 308 (560)
....+|.|++||+|||+|+|.|||+.
T Consensus 133 ~~~~sy~VevSymEIYcErVrDLL~~ 158 (1221)
T KOG0245|consen 133 SQQMSYSVEVSYMEIYCERVRDLLNA 158 (1221)
T ss_pred cccceEEEEEeehhHHHHHHHHHhhC
Confidence 44488999999999999999999984
No 145
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=60.76 E-value=5.8 Score=42.05 Aligned_cols=41 Identities=22% Similarity=0.315 Sum_probs=31.1
Q ss_pred cCCCcchhhhhccchHHHHHHhcCCcEEEEEEcccCCCceEE
Q psy7618 90 GMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFT 131 (560)
Q Consensus 90 ~~~a~Q~~vf~~~~~plv~~~l~G~N~~i~aYG~TgSGKTyT 131 (560)
++-..|+.+... ..|+=.-+-.|.=...+-||+.|+|||..
T Consensus 24 de~vGQ~HLlg~-~~~lrr~v~~~~l~SmIl~GPPG~GKTTl 64 (436)
T COG2256 24 DEVVGQEHLLGE-GKPLRRAVEAGHLHSMILWGPPGTGKTTL 64 (436)
T ss_pred HHhcChHhhhCC-CchHHHHHhcCCCceeEEECCCCCCHHHH
Confidence 334567888866 66666666678888899999999999963
No 146
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=60.56 E-value=3.6 Score=36.61 Aligned_cols=15 Identities=40% Similarity=0.589 Sum_probs=13.2
Q ss_pred EEEEcccCCCceEEe
Q psy7618 118 IFAYGQTGTGKTFTM 132 (560)
Q Consensus 118 i~aYG~TgSGKTyTm 132 (560)
|+-+|++|+|||+.+
T Consensus 2 vlL~G~~G~GKt~l~ 16 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLA 16 (139)
T ss_dssp EEEEESSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999764
No 147
>KOG2543|consensus
Probab=60.50 E-value=2.9 Score=43.95 Aligned_cols=17 Identities=41% Similarity=0.872 Sum_probs=14.5
Q ss_pred EEEEEEcccCCCceEEe
Q psy7618 116 VTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyTm 132 (560)
..|+-||.+||||||++
T Consensus 31 S~~~iyG~sgTGKT~~~ 47 (438)
T KOG2543|consen 31 SIVHIYGHSGTGKTYLV 47 (438)
T ss_pred eeEEEeccCCCchhHHH
Confidence 34689999999999975
No 148
>KOG1803|consensus
Probab=60.35 E-value=7.9 Score=43.00 Aligned_cols=19 Identities=37% Similarity=0.420 Sum_probs=16.3
Q ss_pred EEEEEEcccCCCceEEecc
Q psy7618 116 VTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyTm~G 134 (560)
-..+-.|+.|+|||||+.-
T Consensus 202 ~l~~I~GPPGTGKT~TlvE 220 (649)
T KOG1803|consen 202 DLLIIHGPPGTGKTRTLVE 220 (649)
T ss_pred CceEeeCCCCCCceeeHHH
Confidence 5577899999999999865
No 149
>KOG4280|consensus
Probab=60.15 E-value=2.2 Score=47.32 Aligned_cols=26 Identities=42% Similarity=0.791 Sum_probs=22.8
Q ss_pred ccccccceeeEeecchhhcccccCCC
Q psy7618 286 HKCIVECCYLELYQGKIRDLLNVSRP 311 (560)
Q Consensus 286 ~~~~v~~s~lei~~~~~~dll~~~~~ 311 (560)
..|.|++||+|||++.++|||+...+
T Consensus 132 ~~f~vrvS~lEiYnE~i~DLL~~~~~ 157 (574)
T KOG4280|consen 132 TRFLVRVSYLEIYNESIRDLLSPVNP 157 (574)
T ss_pred ceEEEEeehHHHHhHHHHHHhCccCc
Confidence 37999999999999999999986543
No 150
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=60.12 E-value=3.2 Score=44.06 Aligned_cols=20 Identities=35% Similarity=0.348 Sum_probs=16.9
Q ss_pred cEEEEEEcccCCCceEEecc
Q psy7618 115 NVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 115 N~~i~aYG~TgSGKTyTm~G 134 (560)
...++-.|+||+|||+|+..
T Consensus 137 g~ii~lvGptGvGKTTtiak 156 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAK 156 (374)
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 46788899999999999754
No 151
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=59.87 E-value=2.8 Score=37.31 Aligned_cols=15 Identities=47% Similarity=0.629 Sum_probs=12.1
Q ss_pred EEEEEcccCCCceEE
Q psy7618 117 TIFAYGQTGTGKTFT 131 (560)
Q Consensus 117 ~i~aYG~TgSGKTyT 131 (560)
.+--.|+||+||||+
T Consensus 55 VlSfHG~tGtGKn~v 69 (127)
T PF06309_consen 55 VLSFHGWTGTGKNFV 69 (127)
T ss_pred EEEeecCCCCcHHHH
Confidence 344579999999996
No 152
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=59.77 E-value=4.6 Score=43.52 Aligned_cols=24 Identities=38% Similarity=0.544 Sum_probs=18.5
Q ss_pred HHHHhcCCcEEEEEEcccCCCceEEe
Q psy7618 107 VNHMLHGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 107 v~~~l~G~N~~i~aYG~TgSGKTyTm 132 (560)
+..++.|.| |++-++||||||.+.
T Consensus 39 ip~il~g~d--vi~~ApTGsGKTla~ 62 (423)
T PRK04837 39 LPLTLAGRD--VAGQAQTGTGKTMAF 62 (423)
T ss_pred HHHHhCCCc--EEEECCCCchHHHHH
Confidence 445678988 566779999999863
No 153
>PTZ00424 helicase 45; Provisional
Probab=59.75 E-value=6.1 Score=42.02 Aligned_cols=25 Identities=40% Similarity=0.674 Sum_probs=19.3
Q ss_pred HHHHHhcCCcEEEEEEcccCCCceEEe
Q psy7618 106 MVNHMLHGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 106 lv~~~l~G~N~~i~aYG~TgSGKTyTm 132 (560)
.+..+++|.|. +..++||||||.+.
T Consensus 58 ai~~i~~~~d~--ii~apTGsGKT~~~ 82 (401)
T PTZ00424 58 GIKPILDGYDT--IGQAQSGTGKTATF 82 (401)
T ss_pred HHHHHhCCCCE--EEECCCCChHHHHH
Confidence 45566789985 46789999999764
No 154
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=59.67 E-value=2.1 Score=45.72 Aligned_cols=18 Identities=39% Similarity=0.665 Sum_probs=14.8
Q ss_pred cEEEEEEcccCCCceEEe
Q psy7618 115 NVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 115 N~~i~aYG~TgSGKTyTm 132 (560)
...|+-||++|+|||+..
T Consensus 165 p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCceEEECCCCCChHHHH
Confidence 345889999999999764
No 155
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=59.60 E-value=4.4 Score=46.73 Aligned_cols=36 Identities=31% Similarity=0.433 Sum_probs=27.1
Q ss_pred hhhhhccchHHHHHHh-cCCcEEEEEEcccCCCceEEe
Q psy7618 96 TEIYENSVRPMVNHML-HGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 96 ~~vf~~~~~plv~~~l-~G~N~~i~aYG~TgSGKTyTm 132 (560)
-.||.- +......++ .+.|-||+..|.+|||||.|+
T Consensus 66 PHif~~-a~~A~~~m~~~~~~Q~IiisGeSGsGKTe~~ 102 (689)
T PF00063_consen 66 PHIFAV-AQRAYRQMLRTRQNQSIIISGESGSGKTETS 102 (689)
T ss_dssp SSHHHH-HHHHHHHHHHHTSEEEEEEEESTTSSHHHHH
T ss_pred Cccchh-hhcccccccccccccceeeccccccccccch
Confidence 456754 444444444 689999999999999999985
No 156
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=59.30 E-value=3.3 Score=41.57 Aligned_cols=19 Identities=32% Similarity=0.434 Sum_probs=15.4
Q ss_pred cEEEEEEcccCCCceEEec
Q psy7618 115 NVTIFAYGQTGTGKTFTME 133 (560)
Q Consensus 115 N~~i~aYG~TgSGKTyTm~ 133 (560)
-..++-||++|+|||++..
T Consensus 42 ~~~vll~GppGtGKTtlA~ 60 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVAR 60 (261)
T ss_pred cceEEEEcCCCCCHHHHHH
Confidence 3557889999999998753
No 157
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=59.29 E-value=3.3 Score=39.62 Aligned_cols=21 Identities=29% Similarity=0.349 Sum_probs=15.2
Q ss_pred CCcEEEEEEcccCCCceEEec
Q psy7618 113 GYNVTIFAYGQTGTGKTFTME 133 (560)
Q Consensus 113 G~N~~i~aYG~TgSGKTyTm~ 133 (560)
..-..+|..|+.|||||+.+.
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~ 33 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLAR 33 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHH
T ss_pred cCCEEEEEeCCCCCCHHHHHH
Confidence 345679999999999987653
No 158
>KOG0727|consensus
Probab=58.94 E-value=7.1 Score=38.85 Aligned_cols=75 Identities=25% Similarity=0.443 Sum_probs=45.7
Q ss_pred eCCccccCCCcchhhhhccchHHHHHHh---cCCc--EEEEEEcccCCCceEEec--------------cCC---CCcCh
Q psy7618 84 TFDAVYGMQATQTEIYENSVRPMVNHML---HGYN--VTIFAYGQTGTGKTFTME--------------GSQ---MERGI 141 (560)
Q Consensus 84 ~FD~VF~~~a~Q~~vf~~~~~plv~~~l---~G~N--~~i~aYG~TgSGKTyTm~--------------G~~---~~~Gi 141 (560)
++..|=+-+..-++|-+.+-.|+...-+ =|.. -.++.||+.|+|||...- |+. .--|-
T Consensus 153 sy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylge 232 (408)
T KOG0727|consen 153 SYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGE 232 (408)
T ss_pred cccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhcc
Confidence 3344444445455566655566665444 1333 358999999999974321 211 13466
Q ss_pred HHHHHHHHHHHHhhhcc
Q psy7618 142 MQNAFRQIFDFKQKEKR 158 (560)
Q Consensus 142 ipr~l~~lF~~~~~~~~ 158 (560)
=||.++++|....+...
T Consensus 233 gprmvrdvfrlakenap 249 (408)
T KOG0727|consen 233 GPRMVRDVFRLAKENAP 249 (408)
T ss_pred CcHHHHHHHHHHhccCC
Confidence 69999999998776543
No 159
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=58.30 E-value=5.2 Score=45.95 Aligned_cols=31 Identities=26% Similarity=0.285 Sum_probs=21.9
Q ss_pred chHHHHHHhc-----CCcEEEEEEcccCCCceEEecc
Q psy7618 103 VRPMVNHMLH-----GYNVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 103 ~~plv~~~l~-----G~N~~i~aYG~TgSGKTyTm~G 134 (560)
+..+++.+.. |.+..|+.. +||||||+||..
T Consensus 247 v~~~~~~~~~~~~~~~~~~gli~~-~TGsGKT~t~~~ 282 (667)
T TIGR00348 247 VKKIVESITRKTWGKDERGGLIWH-TQGSGKTLTMLF 282 (667)
T ss_pred HHHHHHHHHhcccCCCCceeEEEE-ecCCCccHHHHH
Confidence 5556666665 445555444 999999999977
No 160
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=58.16 E-value=5.6 Score=43.12 Aligned_cols=27 Identities=26% Similarity=0.482 Sum_probs=18.2
Q ss_pred hHHHHHHhcCCcEEEEEEcccCCCceEEe
Q psy7618 104 RPMVNHMLHGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 104 ~plv~~~l~G~N~~i~aYG~TgSGKTyTm 132 (560)
..++..+..|.|. +-||++|+|||+..
T Consensus 185 e~l~~~L~~~~~i--il~GppGtGKT~lA 211 (459)
T PRK11331 185 ETILKRLTIKKNI--ILQGPPGVGKTFVA 211 (459)
T ss_pred HHHHHHHhcCCCE--EEECCCCCCHHHHH
Confidence 3344445556554 44999999999863
No 161
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=58.00 E-value=3.1 Score=43.75 Aligned_cols=43 Identities=26% Similarity=0.437 Sum_probs=29.1
Q ss_pred eeeCCccccCCCcchhhhhccchHHHHHHhcCCcEEEEEEcccCCCceEEe
Q psy7618 82 RFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 82 ~F~FD~VF~~~a~Q~~vf~~~~~plv~~~l~G~N~~i~aYG~TgSGKTyTm 132 (560)
.|.|+.|-++ +++= .-++..+.+-.=+.|+.+|.+|||||+.+
T Consensus 13 ~~pf~~ivGq----~~~k----~al~~~~~~p~~~~vli~G~~GtGKs~~a 55 (350)
T CHL00081 13 VFPFTAIVGQ----EEMK----LALILNVIDPKIGGVMIMGDRGTGKSTTI 55 (350)
T ss_pred CCCHHHHhCh----HHHH----HHHHHhccCCCCCeEEEEcCCCCCHHHHH
Confidence 6889888764 3332 33444444433356889999999999875
No 162
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=57.57 E-value=7.1 Score=45.42 Aligned_cols=58 Identities=22% Similarity=0.300 Sum_probs=34.0
Q ss_pred HHHHhcCCcEEEEEEcccCCCceEEeccCCCCcChHHHHHHHHHHHH-hhhccCcEEEEeehhhhhhhhh
Q psy7618 107 VNHMLHGYNVTIFAYGQTGTGKTFTMEGSQMERGIMQNAFRQIFDFK-QKEKRHKCIVECCYLELYQGKI 175 (560)
Q Consensus 107 v~~~l~G~N~~i~aYG~TgSGKTyTm~G~~~~~Giipr~l~~lF~~~-~~~~~~~~~v~~s~~e~~~~~~ 175 (560)
+..+.+|.|+.|+| |||||||-+- ++| ++..|++.- ......-+.+.+|-+.--+.++
T Consensus 31 ~~~i~~G~nvLiiA--PTGsGKTeAA--------fLp-il~~l~~~~~~~~~~~i~~lYIsPLkALn~Di 89 (814)
T COG1201 31 IPEIHSGENVLIIA--PTGSGKTEAA--------FLP-VINELLSLGKGKLEDGIYALYISPLKALNNDI 89 (814)
T ss_pred HHHHhCCCceEEEc--CCCCChHHHH--------HHH-HHHHHHhccCCCCCCceEEEEeCcHHHHHHHH
Confidence 34567999998877 9999999763 333 445555542 1112334556666554444433
No 163
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=57.53 E-value=4.5 Score=41.23 Aligned_cols=20 Identities=40% Similarity=0.738 Sum_probs=17.9
Q ss_pred cCCcEEEEEEcccCCCceEE
Q psy7618 112 HGYNVTIFAYGQTGTGKTFT 131 (560)
Q Consensus 112 ~G~N~~i~aYG~TgSGKTyT 131 (560)
.|++-+||..|++|+|||.-
T Consensus 1 kg~~fnImVvG~sG~GKTTF 20 (281)
T PF00735_consen 1 KGFNFNIMVVGESGLGKTTF 20 (281)
T ss_dssp HEEEEEEEEEECTTSSHHHH
T ss_pred CCceEEEEEECCCCCCHHHH
Confidence 48899999999999999864
No 164
>KOG2373|consensus
Probab=57.44 E-value=11 Score=39.31 Aligned_cols=30 Identities=37% Similarity=0.621 Sum_probs=21.8
Q ss_pred hHHHHHHhcCCc---EEEEEEcccCCCceEEecc
Q psy7618 104 RPMVNHMLHGYN---VTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 104 ~plv~~~l~G~N---~~i~aYG~TgSGKTyTm~G 134 (560)
-|.+...+.|.- -||| -|+||||||.-|.-
T Consensus 260 FpvLNk~LkGhR~GElTvl-TGpTGsGKTTFlsE 292 (514)
T KOG2373|consen 260 FPVLNKYLKGHRPGELTVL-TGPTGSGKTTFLSE 292 (514)
T ss_pred hhHHHHHhccCCCCceEEE-ecCCCCCceeEehH
Confidence 366777888854 3444 59999999987743
No 165
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=57.39 E-value=7.4 Score=37.98 Aligned_cols=30 Identities=23% Similarity=0.335 Sum_probs=24.4
Q ss_pred chHHHHHHhcC---CcEEEEEEcccCCCceEEe
Q psy7618 103 VRPMVNHMLHG---YNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 103 ~~plv~~~l~G---~N~~i~aYG~TgSGKTyTm 132 (560)
+-+-+|.++.| ....+.-+|++|||||..+
T Consensus 4 G~~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 36 (235)
T cd01123 4 GSKALDELLGGGIETGSITEIFGEFGSGKTQLC 36 (235)
T ss_pred CchhhHhhccCCCCCCeEEEEECCCCCCHHHHH
Confidence 45668888886 5678899999999999764
No 166
>PHA02244 ATPase-like protein
Probab=57.39 E-value=7.2 Score=41.24 Aligned_cols=34 Identities=18% Similarity=0.296 Sum_probs=20.8
Q ss_pred hhhhccchHHHHHHhcCCcEEEEEEcccCCCceEEe
Q psy7618 97 EIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 97 ~vf~~~~~plv~~~l~G~N~~i~aYG~TgSGKTyTm 132 (560)
..+......+...+-.|.+. +-+|+||+|||+..
T Consensus 103 p~~~~~~~ri~r~l~~~~PV--LL~GppGtGKTtLA 136 (383)
T PHA02244 103 PTFHYETADIAKIVNANIPV--FLKGGAGSGKNHIA 136 (383)
T ss_pred HHHHHHHHHHHHHHhcCCCE--EEECCCCCCHHHHH
Confidence 34433333444444466654 45899999999764
No 167
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=57.08 E-value=4 Score=41.73 Aligned_cols=17 Identities=35% Similarity=0.599 Sum_probs=13.8
Q ss_pred EEEEEcccCCCceEEec
Q psy7618 117 TIFAYGQTGTGKTFTME 133 (560)
Q Consensus 117 ~i~aYG~TgSGKTyTm~ 133 (560)
-...||+|||||++-+-
T Consensus 89 I~~VYGPTG~GKSqLlR 105 (369)
T PF02456_consen 89 IGVVYGPTGSGKSQLLR 105 (369)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 35679999999998763
No 168
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=56.84 E-value=7.3 Score=42.05 Aligned_cols=25 Identities=32% Similarity=0.519 Sum_probs=19.8
Q ss_pred HHHHHhcCCcEEEEEEcccCCCceEEe
Q psy7618 106 MVNHMLHGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 106 lv~~~l~G~N~~i~aYG~TgSGKTyTm 132 (560)
.+..+++|.| +++.++||||||.+.
T Consensus 31 ai~~~~~g~d--~l~~apTGsGKT~~~ 55 (434)
T PRK11192 31 AIPPALDGRD--VLGSAPTGTGKTAAF 55 (434)
T ss_pred HHHHHhCCCC--EEEECCCCChHHHHH
Confidence 3455678887 788899999999763
No 169
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=56.57 E-value=5.7 Score=45.93 Aligned_cols=40 Identities=23% Similarity=0.264 Sum_probs=25.0
Q ss_pred CcchhhhhccchHHHHHHhcCCcEEEEEEcccCCCceEEec
Q psy7618 93 ATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTME 133 (560)
Q Consensus 93 a~Q~~vf~~~~~plv~~~l~G~N~~i~aYG~TgSGKTyTm~ 133 (560)
..|+.+-.. ...+...+-.+.-..++-||++|+|||++..
T Consensus 31 vGQe~ii~~-~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~ 70 (725)
T PRK13341 31 VGQDHILGE-GRLLRRAIKADRVGSLILYGPPGVGKTTLAR 70 (725)
T ss_pred cCcHHHhhh-hHHHHHHHhcCCCceEEEECCCCCCHHHHHH
Confidence 345555432 2233333334555578889999999998864
No 170
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=56.53 E-value=6.1 Score=41.03 Aligned_cols=43 Identities=23% Similarity=0.319 Sum_probs=26.0
Q ss_pred cCCCcchhhhhccchHHHHHHhc-C-CcEEEEEEcccCCCceEEec
Q psy7618 90 GMQATQTEIYENSVRPMVNHMLH-G-YNVTIFAYGQTGTGKTFTME 133 (560)
Q Consensus 90 ~~~a~Q~~vf~~~~~plv~~~l~-G-~N~~i~aYG~TgSGKTyTm~ 133 (560)
+.-..|+++-+. +..++..... | .-..++-||++|+|||+...
T Consensus 25 ~~~vG~~~~~~~-l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 25 DEFIGQEKVKEN-LKIFIEAAKKRGEALDHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred HHhcCcHHHHHH-HHHHHHHHHhcCCCCCcEEEECCCCccHHHHHH
Confidence 334556665554 3334443322 2 22457889999999998864
No 171
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=56.42 E-value=4 Score=31.56 Aligned_cols=15 Identities=27% Similarity=0.541 Sum_probs=12.6
Q ss_pred EEEEcccCCCceEEe
Q psy7618 118 IFAYGQTGTGKTFTM 132 (560)
Q Consensus 118 i~aYG~TgSGKTyTm 132 (560)
.+-.|++|||||..|
T Consensus 26 tli~G~nGsGKSTll 40 (62)
T PF13555_consen 26 TLITGPNGSGKSTLL 40 (62)
T ss_pred EEEECCCCCCHHHHH
Confidence 577899999999755
No 172
>KOG0335|consensus
Probab=56.19 E-value=4.6 Score=43.81 Aligned_cols=23 Identities=35% Similarity=0.420 Sum_probs=18.5
Q ss_pred hcCCcEEEEEEcccCCCceEEeccC
Q psy7618 111 LHGYNVTIFAYGQTGTGKTFTMEGS 135 (560)
Q Consensus 111 l~G~N~~i~aYG~TgSGKTyTm~G~ 135 (560)
.+|.. ++|++|||||||+...++
T Consensus 109 ~~Grd--l~acAqTGsGKT~aFLiP 131 (482)
T KOG0335|consen 109 SGGRD--LMACAQTGSGKTAAFLIP 131 (482)
T ss_pred ecCCc--eEEEccCCCcchHHHHHH
Confidence 45555 499999999999998764
No 173
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=56.19 E-value=6.6 Score=37.64 Aligned_cols=25 Identities=32% Similarity=0.488 Sum_probs=19.2
Q ss_pred HHHhcCC---cEEEEEEcccCCCceEEe
Q psy7618 108 NHMLHGY---NVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 108 ~~~l~G~---N~~i~aYG~TgSGKTyTm 132 (560)
|.++.|- ...+.-||++|||||...
T Consensus 2 D~~l~GGi~~g~i~~i~G~~GsGKT~l~ 29 (209)
T TIGR02237 2 DELLGGGVERGTITQIYGPPGSGKTNIC 29 (209)
T ss_pred hhhhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 4556553 678999999999999764
No 174
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=56.03 E-value=5.7 Score=40.23 Aligned_cols=27 Identities=26% Similarity=0.527 Sum_probs=19.4
Q ss_pred HHHHHhcCCcEEEEEEcccCCCceEEec
Q psy7618 106 MVNHMLHGYNVTIFAYGQTGTGKTFTME 133 (560)
Q Consensus 106 lv~~~l~G~N~~i~aYG~TgSGKTyTm~ 133 (560)
+++..+.. +--++-.|++|+|||-++.
T Consensus 25 ll~~l~~~-~~pvLl~G~~GtGKT~li~ 51 (272)
T PF12775_consen 25 LLDLLLSN-GRPVLLVGPSGTGKTSLIQ 51 (272)
T ss_dssp HHHHHHHC-TEEEEEESSTTSSHHHHHH
T ss_pred HHHHHHHc-CCcEEEECCCCCchhHHHH
Confidence 44444443 5567999999999997653
No 175
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=55.90 E-value=4 Score=40.00 Aligned_cols=20 Identities=40% Similarity=0.561 Sum_probs=16.8
Q ss_pred cEEEEEEcccCCCceEEecc
Q psy7618 115 NVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 115 N~~i~aYG~TgSGKTyTm~G 134 (560)
...++-||++|+|||++.-+
T Consensus 12 ~~~~liyG~~G~GKtt~a~~ 31 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKY 31 (220)
T ss_pred CcEEEEECCCCCCHHHHHHh
Confidence 35699999999999998754
No 176
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=55.66 E-value=5.8 Score=41.41 Aligned_cols=25 Identities=32% Similarity=0.579 Sum_probs=21.8
Q ss_pred cccccccceeeEeecchhhcccccC
Q psy7618 285 RHKCIVECCYLELYQGKIRDLLNVS 309 (560)
Q Consensus 285 ~~~~~v~~s~lei~~~~~~dll~~~ 309 (560)
...|.|++||+|||++.++|||+..
T Consensus 127 ~~~~~v~~S~~Eiy~e~v~DLL~~~ 151 (334)
T cd01375 127 TKTYTVHVSYLEIYNEQLYDLLGDT 151 (334)
T ss_pred CcceEEEEEEEEEECCEeecCCCCC
Confidence 3568899999999999999999754
No 177
>PLN03025 replication factor C subunit; Provisional
Probab=55.61 E-value=5.8 Score=41.06 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=17.0
Q ss_pred cCCcEEEEEEcccCCCceEEecc
Q psy7618 112 HGYNVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 112 ~G~N~~i~aYG~TgSGKTyTm~G 134 (560)
.|.-..++-||++|+|||++...
T Consensus 31 ~~~~~~lll~Gp~G~GKTtla~~ 53 (319)
T PLN03025 31 DGNMPNLILSGPPGTGKTTSILA 53 (319)
T ss_pred cCCCceEEEECCCCCCHHHHHHH
Confidence 33333466799999999998755
No 178
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=55.31 E-value=7.9 Score=37.67 Aligned_cols=27 Identities=30% Similarity=0.525 Sum_probs=21.6
Q ss_pred hHHHHHHhcC---CcEEEEEEcccCCCceE
Q psy7618 104 RPMVNHMLHG---YNVTIFAYGQTGTGKTF 130 (560)
Q Consensus 104 ~plv~~~l~G---~N~~i~aYG~TgSGKTy 130 (560)
-|-+|.++.| .+..++.+|++|||||.
T Consensus 5 I~~LD~~l~GGip~gs~~li~G~~GsGKT~ 34 (226)
T PF06745_consen 5 IPGLDELLGGGIPKGSVVLISGPPGSGKTT 34 (226)
T ss_dssp STTHHHHTTTSEETTSEEEEEESTTSSHHH
T ss_pred chhHHHhhcCCCCCCcEEEEEeCCCCCcHH
Confidence 3456777855 67899999999999974
No 179
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=55.19 E-value=5.9 Score=40.86 Aligned_cols=30 Identities=23% Similarity=0.403 Sum_probs=21.7
Q ss_pred chHHHHHHhcCCcEEEEEEcccCCCceEEec
Q psy7618 103 VRPMVNHMLHGYNVTIFAYGQTGTGKTFTME 133 (560)
Q Consensus 103 ~~plv~~~l~G~N~~i~aYG~TgSGKTyTm~ 133 (560)
+.+++..++.+. ..++-.|+||||||..|-
T Consensus 133 ~~~~l~~~v~~~-~~ili~G~tGsGKTTll~ 162 (308)
T TIGR02788 133 IKEFLRLAIASR-KNIIISGGTGSGKTTFLK 162 (308)
T ss_pred HHHHHHHHhhCC-CEEEEECCCCCCHHHHHH
Confidence 445666666544 467788999999998763
No 180
>PRK04328 hypothetical protein; Provisional
Probab=55.18 E-value=8.6 Score=38.31 Aligned_cols=28 Identities=29% Similarity=0.453 Sum_probs=23.4
Q ss_pred chHHHHHHhcC---CcEEEEEEcccCCCceE
Q psy7618 103 VRPMVNHMLHG---YNVTIFAYGQTGTGKTF 130 (560)
Q Consensus 103 ~~plv~~~l~G---~N~~i~aYG~TgSGKTy 130 (560)
+-+-+|.++.| ...+++.+|++|||||.
T Consensus 8 Gi~~LD~lL~GGip~gs~ili~G~pGsGKT~ 38 (249)
T PRK04328 8 GIPGMDEILYGGIPERNVVLLSGGPGTGKSI 38 (249)
T ss_pred CchhHHHHhcCCCcCCcEEEEEcCCCCCHHH
Confidence 45568888887 68889999999999975
No 181
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=54.44 E-value=6.7 Score=40.03 Aligned_cols=32 Identities=25% Similarity=0.445 Sum_probs=24.6
Q ss_pred ccchHHHHHHhcCCcEEEEEEcccCCCceEEec
Q psy7618 101 NSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTME 133 (560)
Q Consensus 101 ~~~~plv~~~l~G~N~~i~aYG~TgSGKTyTm~ 133 (560)
..+.||+ ..+.--+..+--||+|++|||.++.
T Consensus 180 afa~pLL-~~l~~~~~~~hl~G~Ss~GKTt~~~ 211 (286)
T PF06048_consen 180 AFAAPLL-SLLGVEGFGFHLYGQSSSGKTTALQ 211 (286)
T ss_pred HHHHHHH-HHhCCCceEEEEEeCCCCCHHHHHH
Confidence 3355555 5566778899999999999998773
No 182
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=54.34 E-value=7.2 Score=40.51 Aligned_cols=20 Identities=35% Similarity=0.494 Sum_probs=16.1
Q ss_pred cEEEEEEcccCCCceEEecc
Q psy7618 115 NVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 115 N~~i~aYG~TgSGKTyTm~G 134 (560)
...|.-.|++|+|||.|+.-
T Consensus 114 ~~vi~lvGpnGsGKTTt~~k 133 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGK 133 (318)
T ss_pred CeEEEEECCCCCcHHHHHHH
Confidence 45677789999999999643
No 183
>KOG0240|consensus
Probab=54.32 E-value=4.5 Score=44.31 Aligned_cols=29 Identities=34% Similarity=0.620 Sum_probs=24.3
Q ss_pred cccccccccceeeEeecchhhcccccCCC
Q psy7618 283 KKRHKCIVECCYLELYQGKIRDLLNVSRP 311 (560)
Q Consensus 283 ~~~~~~~v~~s~lei~~~~~~dll~~~~~ 311 (560)
.....|.|.|||+|||.|+++|||+....
T Consensus 128 ~~n~efhVkVsy~EIYmEKi~DLL~~~k~ 156 (607)
T KOG0240|consen 128 EENLEFHVKVSYFEIYMEKIRDLLDPEKT 156 (607)
T ss_pred cccceEEEEEEeehhhhhHHHHHhCcccC
Confidence 34467999999999999999999985543
No 184
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=54.10 E-value=5.9 Score=41.21 Aligned_cols=24 Identities=38% Similarity=0.600 Sum_probs=21.6
Q ss_pred ccccccceeeEeecchhhcccccC
Q psy7618 286 HKCIVECCYLELYQGKIRDLLNVS 309 (560)
Q Consensus 286 ~~~~v~~s~lei~~~~~~dll~~~ 309 (560)
..+.|++||+|||++.++|||+..
T Consensus 124 ~~~~v~vS~~EIy~e~v~DLL~~~ 147 (335)
T PF00225_consen 124 YEFSVSVSYLEIYNEKVYDLLSPN 147 (335)
T ss_dssp EEEEEEEEEEEEETTEEEETTSTT
T ss_pred ccccccccchhhhhhhhhhhcCcc
Confidence 568899999999999999999754
No 185
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=54.06 E-value=6.7 Score=41.75 Aligned_cols=38 Identities=24% Similarity=0.403 Sum_probs=24.6
Q ss_pred hhhhhccchHHHHHHhcC----CcEEEEEEcccCCCceEEec
Q psy7618 96 TEIYENSVRPMVNHMLHG----YNVTIFAYGQTGTGKTFTME 133 (560)
Q Consensus 96 ~~vf~~~~~plv~~~l~G----~N~~i~aYG~TgSGKTyTm~ 133 (560)
...|.....-++.++.+- ....|.-.||||-|||.|+-
T Consensus 180 ~~~~~~~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlA 221 (407)
T COG1419 180 LRYFSEKLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLA 221 (407)
T ss_pred hhhHHHHHHHHHHhhccccccccCcEEEEECCCCCcHHHHHH
Confidence 344444444444444443 36778889999999999963
No 186
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=54.05 E-value=4.5 Score=40.42 Aligned_cols=14 Identities=43% Similarity=0.705 Sum_probs=12.1
Q ss_pred EEEcccCCCceEEe
Q psy7618 119 FAYGQTGTGKTFTM 132 (560)
Q Consensus 119 ~aYG~TgSGKTyTm 132 (560)
.-.|++|||||.||
T Consensus 31 vliGpSGsGKTTtL 44 (309)
T COG1125 31 VLIGPSGSGKTTTL 44 (309)
T ss_pred EEECCCCCcHHHHH
Confidence 34699999999997
No 187
>KOG0953|consensus
Probab=53.90 E-value=5.7 Score=43.63 Aligned_cols=40 Identities=20% Similarity=0.269 Sum_probs=27.9
Q ss_pred EEEEEcccCCCceEEeccC---C---CCcChHHHHHHHHHHHHhhh
Q psy7618 117 TIFAYGQTGTGKTFTMEGS---Q---MERGIMQNAFRQIFDFKQKE 156 (560)
Q Consensus 117 ~i~aYG~TgSGKTyTm~G~---~---~~~Giipr~l~~lF~~~~~~ 156 (560)
-||..|+|+|||||--+-. . --.|=+-....++|+..+..
T Consensus 193 Ii~H~GPTNSGKTy~ALqrl~~aksGvycGPLrLLA~EV~~r~na~ 238 (700)
T KOG0953|consen 193 IIMHVGPTNSGKTYRALQRLKSAKSGVYCGPLRLLAHEVYDRLNAL 238 (700)
T ss_pred EEEEeCCCCCchhHHHHHHHhhhccceecchHHHHHHHHHHHhhhc
Confidence 4999999999999976431 1 12344666677888876654
No 188
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=53.67 E-value=7.1 Score=44.59 Aligned_cols=27 Identities=33% Similarity=0.356 Sum_probs=19.4
Q ss_pred HHHHhcCCcEEEEEEcccCCCceEEecc
Q psy7618 107 VNHMLHGYNVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 107 v~~~l~G~N~~i~aYG~TgSGKTyTm~G 134 (560)
|..++... ..++..|++|||||||+..
T Consensus 166 v~~~l~~~-~~~lI~GpPGTGKT~t~~~ 192 (637)
T TIGR00376 166 VSFALSSK-DLFLIHGPPGTGKTRTLVE 192 (637)
T ss_pred HHHHhcCC-CeEEEEcCCCCCHHHHHHH
Confidence 44444432 3467999999999999865
No 189
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=53.55 E-value=9.2 Score=41.72 Aligned_cols=24 Identities=42% Similarity=0.620 Sum_probs=19.2
Q ss_pred HHHHhcCCcEEEEEEcccCCCceEEe
Q psy7618 107 VNHMLHGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 107 v~~~l~G~N~~i~aYG~TgSGKTyTm 132 (560)
+..+++|.| +++-.+||||||.+.
T Consensus 32 i~~il~g~d--vlv~apTGsGKTla~ 55 (456)
T PRK10590 32 IPAVLEGRD--LMASAQTGTGKTAGF 55 (456)
T ss_pred HHHHhCCCC--EEEECCCCCcHHHHH
Confidence 445678987 688889999999874
No 190
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=53.32 E-value=6.2 Score=41.50 Aligned_cols=24 Identities=38% Similarity=0.612 Sum_probs=21.3
Q ss_pred ccccccceeeEeecchhhcccccC
Q psy7618 286 HKCIVECCYLELYQGKIRDLLNVS 309 (560)
Q Consensus 286 ~~~~v~~s~lei~~~~~~dll~~~ 309 (560)
..|.|++||+|||+|.++|||+..
T Consensus 136 ~~~~v~~S~~EIy~e~v~DLL~~~ 159 (352)
T cd01364 136 TEYSVKVSYLELYNEELFDLLSSE 159 (352)
T ss_pred ceeEEEEEEEEeeCCeeeeCCCCc
Confidence 468899999999999999999744
No 191
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=52.95 E-value=11 Score=41.15 Aligned_cols=17 Identities=35% Similarity=0.675 Sum_probs=15.6
Q ss_pred EEEEEEcccCCCceEEe
Q psy7618 116 VTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyTm 132 (560)
.-++.+|+||||||.++
T Consensus 45 ~h~lvig~tgSGKt~~~ 61 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSF 61 (469)
T ss_pred eEEEEEeCCCCCcccee
Confidence 67899999999999987
No 192
>PRK04195 replication factor C large subunit; Provisional
Probab=52.42 E-value=6.9 Score=43.06 Aligned_cols=30 Identities=30% Similarity=0.541 Sum_probs=21.9
Q ss_pred chHHHHHHhcCC-cEEEEEEcccCCCceEEe
Q psy7618 103 VRPMVNHMLHGY-NVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 103 ~~plv~~~l~G~-N~~i~aYG~TgSGKTyTm 132 (560)
+...+.....|. .-.++-||++|+|||++.
T Consensus 26 l~~~l~~~~~g~~~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 26 LREWIESWLKGKPKKALLLYGPPGVGKTSLA 56 (482)
T ss_pred HHHHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 444555555664 567889999999999876
No 193
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=52.38 E-value=7 Score=39.98 Aligned_cols=21 Identities=29% Similarity=0.311 Sum_probs=16.3
Q ss_pred cCCcEEEEEEcccCCCceEEe
Q psy7618 112 HGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 112 ~G~N~~i~aYG~TgSGKTyTm 132 (560)
.|....++-||+.|+|||+++
T Consensus 35 ~~~~~~~ll~G~~G~GKt~~~ 55 (319)
T PRK00440 35 EKNMPHLLFAGPPGTGKTTAA 55 (319)
T ss_pred CCCCCeEEEECCCCCCHHHHH
Confidence 444445788999999999765
No 194
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=51.97 E-value=6.6 Score=41.20 Aligned_cols=30 Identities=23% Similarity=0.433 Sum_probs=23.1
Q ss_pred chHHHHHHhcCCcEEEEEEcccCCCceEEec
Q psy7618 103 VRPMVNHMLHGYNVTIFAYGQTGTGKTFTME 133 (560)
Q Consensus 103 ~~plv~~~l~G~N~~i~aYG~TgSGKTyTm~ 133 (560)
...++..++.+. +.|+..|.||||||.+|-
T Consensus 167 ~~~~L~~~v~~~-~~ili~G~tGsGKTTll~ 196 (340)
T TIGR03819 167 VARLLRAIVAAR-LAFLISGGTGSGKTTLLS 196 (340)
T ss_pred HHHHHHHHHhCC-CeEEEECCCCCCHHHHHH
Confidence 456666677654 789999999999988763
No 195
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=51.77 E-value=4.7 Score=36.18 Aligned_cols=17 Identities=41% Similarity=0.638 Sum_probs=14.0
Q ss_pred EEEEcccCCCceEEecc
Q psy7618 118 IFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 118 i~aYG~TgSGKTyTm~G 134 (560)
++-+|++|+|||+.+..
T Consensus 2 ~~i~G~~G~GKT~l~~~ 18 (165)
T cd01120 2 ILVFGPTGSGKTTLALQ 18 (165)
T ss_pred eeEeCCCCCCHHHHHHH
Confidence 56799999999987644
No 196
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=51.75 E-value=6.6 Score=41.06 Aligned_cols=75 Identities=27% Similarity=0.486 Sum_probs=45.6
Q ss_pred eCCccccCCCcchhhhhccchHHHH-HHh--cCCc--EEEEEEcccCCCceEEe--------------ccCCC---CcCh
Q psy7618 84 TFDAVYGMQATQTEIYENSVRPMVN-HML--HGYN--VTIFAYGQTGTGKTFTM--------------EGSQM---ERGI 141 (560)
Q Consensus 84 ~FD~VF~~~a~Q~~vf~~~~~plv~-~~l--~G~N--~~i~aYG~TgSGKTyTm--------------~G~~~---~~Gi 141 (560)
+|+.|=+=+..-+++-+.+..||.+ ..| -|.. -.|+-||+.|+|||-.- .|+.- --|=
T Consensus 149 tY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGE 228 (406)
T COG1222 149 TYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGE 228 (406)
T ss_pred ChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhcc
Confidence 3444433334446677766667663 233 2443 35899999999998432 22210 2344
Q ss_pred HHHHHHHHHHHHhhhcc
Q psy7618 142 MQNAFRQIFDFKQKEKR 158 (560)
Q Consensus 142 ipr~l~~lF~~~~~~~~ 158 (560)
=+|.++++|....++..
T Consensus 229 GaRlVRelF~lArekaP 245 (406)
T COG1222 229 GARLVRELFELAREKAP 245 (406)
T ss_pred chHHHHHHHHHHhhcCC
Confidence 58999999998877653
No 197
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=51.71 E-value=6.9 Score=40.58 Aligned_cols=23 Identities=30% Similarity=0.496 Sum_probs=20.7
Q ss_pred ccccccceeeEeecchhhccccc
Q psy7618 286 HKCIVECCYLELYQGKIRDLLNV 308 (560)
Q Consensus 286 ~~~~v~~s~lei~~~~~~dll~~ 308 (560)
..+.|++||+|||+|.++|||+.
T Consensus 124 ~~~~v~~S~~EIy~e~v~DLL~~ 146 (319)
T cd01376 124 WTGAFSMSYYEIYNEKVYDLLEP 146 (319)
T ss_pred ccceEEEEEEEEECCEeeEccCC
Confidence 56789999999999999999974
No 198
>PF05729 NACHT: NACHT domain
Probab=51.56 E-value=5.5 Score=36.03 Aligned_cols=17 Identities=24% Similarity=0.612 Sum_probs=14.5
Q ss_pred EEEEEcccCCCceEEec
Q psy7618 117 TIFAYGQTGTGKTFTME 133 (560)
Q Consensus 117 ~i~aYG~TgSGKTyTm~ 133 (560)
.++.+|..|+|||..|.
T Consensus 2 ~l~I~G~~G~GKStll~ 18 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLR 18 (166)
T ss_pred EEEEECCCCCChHHHHH
Confidence 47889999999998764
No 199
>PLN03188 kinesin-12 family protein; Provisional
Probab=51.36 E-value=6.9 Score=46.94 Aligned_cols=25 Identities=40% Similarity=0.749 Sum_probs=21.8
Q ss_pred cccccccceeeEeecchhhcccccC
Q psy7618 285 RHKCIVECCYLELYQGKIRDLLNVS 309 (560)
Q Consensus 285 ~~~~~v~~s~lei~~~~~~dll~~~ 309 (560)
...|.|++||+|||++.++|||+..
T Consensus 225 ~~~y~V~vSyLEIYNEkI~DLLsp~ 249 (1320)
T PLN03188 225 QLKYQCRCSFLEIYNEQITDLLDPS 249 (1320)
T ss_pred ccceEEEEEEEeeecCcceeccccc
Confidence 4568899999999999999999743
No 200
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=51.28 E-value=11 Score=37.94 Aligned_cols=27 Identities=33% Similarity=0.453 Sum_probs=18.3
Q ss_pred hHHHHHHhcCCcEEEEEEcccCCCceEEe
Q psy7618 104 RPMVNHMLHGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 104 ~plv~~~l~G~N~~i~aYG~TgSGKTyTm 132 (560)
+.++..+..|.+. +-+|++|+|||...
T Consensus 12 ~~~l~~l~~g~~v--LL~G~~GtGKT~lA 38 (262)
T TIGR02640 12 SRALRYLKSGYPV--HLRGPAGTGKTTLA 38 (262)
T ss_pred HHHHHHHhcCCeE--EEEcCCCCCHHHHH
Confidence 3344455566554 56899999999753
No 201
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=51.21 E-value=8.1 Score=41.09 Aligned_cols=16 Identities=19% Similarity=0.439 Sum_probs=14.2
Q ss_pred EEEEcccCCCceEEec
Q psy7618 118 IFAYGQTGTGKTFTME 133 (560)
Q Consensus 118 i~aYG~TgSGKTyTm~ 133 (560)
++..|+||||||.++.
T Consensus 2 ~lv~g~tGsGKt~~~v 17 (384)
T cd01126 2 VLVFAPTRSGKGVGFV 17 (384)
T ss_pred eeEecCCCCCCccEEE
Confidence 5789999999999874
No 202
>PRK07261 topology modulation protein; Provisional
Probab=50.89 E-value=6.3 Score=36.81 Aligned_cols=15 Identities=33% Similarity=0.485 Sum_probs=12.7
Q ss_pred EEEEcccCCCceEEe
Q psy7618 118 IFAYGQTGTGKTFTM 132 (560)
Q Consensus 118 i~aYG~TgSGKTyTm 132 (560)
|+..|++|||||+-.
T Consensus 3 i~i~G~~GsGKSTla 17 (171)
T PRK07261 3 IAIIGYSGSGKSTLA 17 (171)
T ss_pred EEEEcCCCCCHHHHH
Confidence 678999999999753
No 203
>PRK00131 aroK shikimate kinase; Reviewed
Probab=50.75 E-value=6.9 Score=35.93 Aligned_cols=16 Identities=31% Similarity=0.418 Sum_probs=14.1
Q ss_pred EEEEEEcccCCCceEE
Q psy7618 116 VTIFAYGQTGTGKTFT 131 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyT 131 (560)
.+|+.+|.+|||||+.
T Consensus 5 ~~i~l~G~~GsGKstl 20 (175)
T PRK00131 5 PNIVLIGFMGAGKSTI 20 (175)
T ss_pred CeEEEEcCCCCCHHHH
Confidence 4789999999999976
No 204
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=50.68 E-value=9.5 Score=43.94 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=17.1
Q ss_pred cCCcEEEEEEcccCCCceEEec
Q psy7618 112 HGYNVTIFAYGQTGTGKTFTME 133 (560)
Q Consensus 112 ~G~N~~i~aYG~TgSGKTyTm~ 133 (560)
.+...-++..|+||||||....
T Consensus 279 ~~~~~~~Ll~~~TGSGKT~va~ 300 (681)
T PRK10917 279 SPKPMNRLLQGDVGSGKTVVAA 300 (681)
T ss_pred ccCCceEEEECCCCCcHHHHHH
Confidence 3444578999999999997653
No 205
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=50.50 E-value=6.5 Score=36.74 Aligned_cols=14 Identities=36% Similarity=0.726 Sum_probs=12.5
Q ss_pred EEEEcccCCCceEE
Q psy7618 118 IFAYGQTGTGKTFT 131 (560)
Q Consensus 118 i~aYG~TgSGKTyT 131 (560)
|+.+|+.|||||+.
T Consensus 2 i~i~G~pGsGKst~ 15 (183)
T TIGR01359 2 VFVLGGPGSGKGTQ 15 (183)
T ss_pred EEEECCCCCCHHHH
Confidence 78999999999875
No 206
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=50.37 E-value=10 Score=37.22 Aligned_cols=31 Identities=26% Similarity=0.408 Sum_probs=24.3
Q ss_pred cchHHHHHHhcC---CcEEEEEEcccCCCceEEe
Q psy7618 102 SVRPMVNHMLHG---YNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 102 ~~~plv~~~l~G---~N~~i~aYG~TgSGKTyTm 132 (560)
++-+-+|.++.| ...+++.+|.+|||||+-.
T Consensus 9 tGi~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~ 42 (234)
T PRK06067 9 TGNEELDRKLGGGIPFPSLILIEGDHGTGKSVLS 42 (234)
T ss_pred cCCHHHHHhhCCCCcCCcEEEEECCCCCChHHHH
Confidence 355677888865 3778899999999998754
No 207
>PF13173 AAA_14: AAA domain
Probab=50.33 E-value=5.7 Score=35.03 Aligned_cols=17 Identities=35% Similarity=0.472 Sum_probs=14.6
Q ss_pred EEEEEEcccCCCceEEe
Q psy7618 116 VTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyTm 132 (560)
-.++-+|+.|+|||+.|
T Consensus 3 ~~~~l~G~R~vGKTtll 19 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLL 19 (128)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 35788999999999975
No 208
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=50.29 E-value=8.2 Score=40.06 Aligned_cols=26 Identities=50% Similarity=0.758 Sum_probs=22.0
Q ss_pred ccccccccceeeEeecchhhcccccC
Q psy7618 284 KRHKCIVECCYLELYQGKIRDLLNVS 309 (560)
Q Consensus 284 ~~~~~~v~~s~lei~~~~~~dll~~~ 309 (560)
....|.|.+||+|||++.++|||+..
T Consensus 123 ~~~~~~v~~S~~EIy~e~v~DLL~~~ 148 (325)
T cd01369 123 ENLEFHVKVSYLEIYMEKIRDLLDVS 148 (325)
T ss_pred CCceEEEEEEEEEEECCChhhcccCc
Confidence 34568899999999999999999743
No 209
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=50.06 E-value=13 Score=36.05 Aligned_cols=32 Identities=28% Similarity=0.368 Sum_probs=24.7
Q ss_pred cchHHHHHHhcCC---cEEEEEEcccCCCceEEec
Q psy7618 102 SVRPMVNHMLHGY---NVTIFAYGQTGTGKTFTME 133 (560)
Q Consensus 102 ~~~plv~~~l~G~---N~~i~aYG~TgSGKTyTm~ 133 (560)
++-|-+|.++.|- ...+.-+|++|||||....
T Consensus 7 tGi~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~ 41 (225)
T PRK09361 7 TGCKMLDELLGGGFERGTITQIYGPPGSGKTNICL 41 (225)
T ss_pred CCcHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHH
Confidence 3556788888653 5678999999999997653
No 210
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=50.03 E-value=6.6 Score=35.37 Aligned_cols=14 Identities=36% Similarity=0.662 Sum_probs=12.2
Q ss_pred EEEEcccCCCceEE
Q psy7618 118 IFAYGQTGTGKTFT 131 (560)
Q Consensus 118 i~aYG~TgSGKTyT 131 (560)
|+..|++|||||+.
T Consensus 2 i~l~G~~GsGKST~ 15 (150)
T cd02021 2 IVVMGVSGSGKSTV 15 (150)
T ss_pred EEEEcCCCCCHHHH
Confidence 67889999999876
No 211
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=50.00 E-value=7.3 Score=40.37 Aligned_cols=24 Identities=42% Similarity=0.776 Sum_probs=21.1
Q ss_pred ccccccceeeEeecchhhcccccC
Q psy7618 286 HKCIVECCYLELYQGKIRDLLNVS 309 (560)
Q Consensus 286 ~~~~v~~s~lei~~~~~~dll~~~ 309 (560)
..|.|.+||+|||++.++|||+..
T Consensus 118 ~~~~v~~S~~Eiy~e~v~DLL~~~ 141 (321)
T cd01374 118 REFLLRVSYLEIYNEKIKDLLSPS 141 (321)
T ss_pred ceEEEEEEEEEEEcCEeEEccCCC
Confidence 467899999999999999999754
No 212
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=49.76 E-value=6.4 Score=36.87 Aligned_cols=18 Identities=28% Similarity=0.466 Sum_probs=15.1
Q ss_pred cEEEEEEcccCCCceEEe
Q psy7618 115 NVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 115 N~~i~aYG~TgSGKTyTm 132 (560)
++..+-||++|+|||..|
T Consensus 19 ~g~~vi~G~Ng~GKStil 36 (202)
T PF13476_consen 19 PGLNVIYGPNGSGKSTIL 36 (202)
T ss_dssp SEEEEEEESTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 456788999999999865
No 213
>PHA02653 RNA helicase NPH-II; Provisional
Probab=49.08 E-value=13 Score=42.81 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=18.3
Q ss_pred HHHHHhcCCcEEEEEEcccCCCceEE
Q psy7618 106 MVNHMLHGYNVTIFAYGQTGTGKTFT 131 (560)
Q Consensus 106 lv~~~l~G~N~~i~aYG~TgSGKTyT 131 (560)
++..+++|.+ |+..|+||||||..
T Consensus 172 il~~i~~gkd--vIv~A~TGSGKTtq 195 (675)
T PHA02653 172 IFEAWISRKP--VVLTGGTGVGKTSQ 195 (675)
T ss_pred HHHHHHhCCC--EEEECCCCCCchhH
Confidence 4455567765 48999999999965
No 214
>PRK08118 topology modulation protein; Reviewed
Probab=48.96 E-value=7.1 Score=36.36 Aligned_cols=13 Identities=38% Similarity=0.667 Sum_probs=11.8
Q ss_pred EEEEcccCCCceE
Q psy7618 118 IFAYGQTGTGKTF 130 (560)
Q Consensus 118 i~aYG~TgSGKTy 130 (560)
|+..|++|||||+
T Consensus 4 I~I~G~~GsGKST 16 (167)
T PRK08118 4 IILIGSGGSGKST 16 (167)
T ss_pred EEEECCCCCCHHH
Confidence 7889999999995
No 215
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=48.84 E-value=9.5 Score=43.88 Aligned_cols=36 Identities=25% Similarity=0.379 Sum_probs=26.5
Q ss_pred hhhhhccchHHHHHHh-cCCcEEEEEEcccCCCceEEe
Q psy7618 96 TEIYENSVRPMVNHML-HGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 96 ~~vf~~~~~plv~~~l-~G~N~~i~aYG~TgSGKTyTm 132 (560)
-.||.- +......++ .|.|-||+.-|.+|||||.|.
T Consensus 73 PHifav-A~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 109 (677)
T smart00242 73 PHVFAI-ADNAYRNMLNDKENQSIIISGESGAGKTENT 109 (677)
T ss_pred CCHHHH-HHHHHHHHHhcCCCceEEEecCCCCcchHHH
Confidence 456654 333333333 689999999999999999987
No 216
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=48.80 E-value=6.3 Score=42.63 Aligned_cols=19 Identities=37% Similarity=0.440 Sum_probs=15.7
Q ss_pred EEEEEEcccCCCceEEecc
Q psy7618 116 VTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyTm~G 134 (560)
..++-.|+||+|||+|+..
T Consensus 222 ~~i~~vGptGvGKTTt~~k 240 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAK 240 (424)
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 3677779999999999755
No 217
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=48.78 E-value=13 Score=40.81 Aligned_cols=25 Identities=32% Similarity=0.537 Sum_probs=19.0
Q ss_pred HHHHHhcCCcEEEEEEcccCCCceEEe
Q psy7618 106 MVNHMLHGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 106 lv~~~l~G~N~~i~aYG~TgSGKTyTm 132 (560)
.+..++.|.+ +++..+||||||.+.
T Consensus 19 ai~~~l~g~d--vlv~apTGsGKTl~y 43 (470)
T TIGR00614 19 VINAVLLGRD--CFVVMPTGGGKSLCY 43 (470)
T ss_pred HHHHHHcCCC--EEEEcCCCCcHhHHH
Confidence 4456778987 466689999999754
No 218
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=48.71 E-value=8.7 Score=39.94 Aligned_cols=25 Identities=32% Similarity=0.534 Sum_probs=21.9
Q ss_pred cccccccceeeEeecchhhcccccC
Q psy7618 285 RHKCIVECCYLELYQGKIRDLLNVS 309 (560)
Q Consensus 285 ~~~~~v~~s~lei~~~~~~dll~~~ 309 (560)
...|.|.+||+|||++.++|||...
T Consensus 123 ~~~~~v~~S~~EIy~e~v~DLL~~~ 147 (329)
T cd01366 123 GWSYTITASMLEIYNETIRDLLATK 147 (329)
T ss_pred CceEEEEEEEEEEECCEeEECCCCC
Confidence 4578899999999999999999753
No 219
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=48.57 E-value=8.3 Score=39.84 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=20.1
Q ss_pred hcCCcEEEEEEcccCCCceEEecc
Q psy7618 111 LHGYNVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 111 l~G~N~~i~aYG~TgSGKTyTm~G 134 (560)
-...+.-++-||+.|||||.+|.-
T Consensus 19 ~~~~~~r~vL~G~~GsGKS~~L~q 42 (309)
T PF10236_consen 19 KSSKNNRYVLTGERGSGKSVLLAQ 42 (309)
T ss_pred ccCCceEEEEECCCCCCHHHHHHH
Confidence 356778899999999999999754
No 220
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=48.57 E-value=6.9 Score=42.10 Aligned_cols=18 Identities=39% Similarity=0.575 Sum_probs=14.7
Q ss_pred cEEEEEEcccCCCceEEe
Q psy7618 115 NVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 115 N~~i~aYG~TgSGKTyTm 132 (560)
+--++.+|+||||||..|
T Consensus 42 ~~h~~i~g~tGsGKt~~i 59 (410)
T cd01127 42 EAHTMIIGTTGTGKTTQI 59 (410)
T ss_pred hccEEEEcCCCCCHHHHH
Confidence 446789999999999754
No 221
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=48.39 E-value=12 Score=42.67 Aligned_cols=25 Identities=36% Similarity=0.716 Sum_probs=19.5
Q ss_pred HHHHHhcCCcEEEEEEcccCCCceEEe
Q psy7618 106 MVNHMLHGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 106 lv~~~l~G~N~~i~aYG~TgSGKTyTm 132 (560)
.+..+++|.+ |++.+|||||||.+.
T Consensus 36 ai~~ll~g~d--vl~~ApTGsGKT~af 60 (629)
T PRK11634 36 CIPHLLNGRD--VLGMAQTGSGKTAAF 60 (629)
T ss_pred HHHHHHcCCC--EEEEcCCCCcHHHHH
Confidence 3455678877 688889999999874
No 222
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=48.31 E-value=17 Score=36.04 Aligned_cols=41 Identities=20% Similarity=0.465 Sum_probs=28.3
Q ss_pred CccccCCCcchhhhhccchHHHHHHhcCCcEE-EEEEcccCCCceEE
Q psy7618 86 DAVYGMQATQTEIYENSVRPMVNHMLHGYNVT-IFAYGQTGTGKTFT 131 (560)
Q Consensus 86 D~VF~~~a~Q~~vf~~~~~plv~~~l~G~N~~-i~aYG~TgSGKTyT 131 (560)
.-+-+-+-.++.+++++ ..+++|+-+. |+-||..|+||+..
T Consensus 60 ~~l~Gvd~qk~~L~~NT-----~~F~~G~pANnVLLwGaRGtGKSSL 101 (287)
T COG2607 60 ADLVGVDRQKEALVRNT-----EQFAEGLPANNVLLWGARGTGKSSL 101 (287)
T ss_pred HHHhCchHHHHHHHHHH-----HHHHcCCcccceEEecCCCCChHHH
Confidence 33444455555566553 4677888765 89999999999754
No 223
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=47.93 E-value=7.4 Score=39.49 Aligned_cols=21 Identities=29% Similarity=0.678 Sum_probs=18.7
Q ss_pred cCCcEEEEEEcccCCCceEEe
Q psy7618 112 HGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 112 ~G~N~~i~aYG~TgSGKTyTm 132 (560)
.|+...|+..|++|+|||..+
T Consensus 1 ~g~~f~I~vvG~sg~GKSTli 21 (276)
T cd01850 1 KGFQFNIMVVGESGLGKSTFI 21 (276)
T ss_pred CCcEEEEEEEcCCCCCHHHHH
Confidence 489999999999999999754
No 224
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=47.63 E-value=17 Score=42.04 Aligned_cols=31 Identities=32% Similarity=0.473 Sum_probs=25.5
Q ss_pred chHHHHHHhcCCcEEEEEEcccCCCceEEecc
Q psy7618 103 VRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 103 ~~plv~~~l~G~N~~i~aYG~TgSGKTyTm~G 134 (560)
+..+++.+-+|.+-.+++. +||+|||+|-+-
T Consensus 174 I~rv~Eaf~~g~~raLlvM-ATGTGKTrTAia 204 (875)
T COG4096 174 IRRVIEAFSKGQNRALLVM-ATGTGKTRTAIA 204 (875)
T ss_pred HHHHHHHHhcCCceEEEEE-ecCCCcceeHHH
Confidence 6778888889999955554 799999999875
No 225
>KOG0729|consensus
Probab=47.41 E-value=9.5 Score=38.26 Aligned_cols=45 Identities=29% Similarity=0.538 Sum_probs=30.0
Q ss_pred cCCc--EEEEEEcccCCCceEEe--------------ccCCC---CcChHHHHHHHHHHHHhhh
Q psy7618 112 HGYN--VTIFAYGQTGTGKTFTM--------------EGSQM---ERGIMQNAFRQIFDFKQKE 156 (560)
Q Consensus 112 ~G~N--~~i~aYG~TgSGKTyTm--------------~G~~~---~~Giipr~l~~lF~~~~~~ 156 (560)
-|.. -.|+.||+.|+|||..- +|+.- --|-=.|.+++||+.....
T Consensus 206 lgidppkgvllygppgtgktl~aravanrtdacfirvigselvqkyvgegarmvrelf~martk 269 (435)
T KOG0729|consen 206 LGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTK 269 (435)
T ss_pred cCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhhhhHHHHHHHHHHhccc
Confidence 3544 35899999999998643 23211 2344568899999876554
No 226
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=47.38 E-value=9 Score=39.79 Aligned_cols=23 Identities=39% Similarity=0.603 Sum_probs=20.8
Q ss_pred ccccccceeeEeecchhhccccc
Q psy7618 286 HKCIVECCYLELYQGKIRDLLNV 308 (560)
Q Consensus 286 ~~~~v~~s~lei~~~~~~dll~~ 308 (560)
..+.|++||+|||++.++|||+.
T Consensus 128 ~~~~v~~S~~EIy~e~v~DLL~~ 150 (322)
T cd01367 128 DDLGVTVSFFEIYGGKLFDLLND 150 (322)
T ss_pred cccEEEEEEEeeecCchhhhccC
Confidence 46789999999999999999974
No 227
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=47.30 E-value=8.9 Score=40.01 Aligned_cols=23 Identities=39% Similarity=0.749 Sum_probs=20.7
Q ss_pred ccccccceeeEeecchhhccccc
Q psy7618 286 HKCIVECCYLELYQGKIRDLLNV 308 (560)
Q Consensus 286 ~~~~v~~s~lei~~~~~~dll~~ 308 (560)
..|.|++||+|||+|.++|||..
T Consensus 129 ~~~~v~~S~~Eiy~e~v~DLL~~ 151 (333)
T cd01371 129 VQFLVRVSYLEIYNEEVRDLLGK 151 (333)
T ss_pred ccEEEEEEEEEeeCCeeeeCCCC
Confidence 56789999999999999999963
No 228
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=47.24 E-value=9.5 Score=39.88 Aligned_cols=25 Identities=36% Similarity=0.635 Sum_probs=21.8
Q ss_pred cccccccceeeEeecchhhcccccC
Q psy7618 285 RHKCIVECCYLELYQGKIRDLLNVS 309 (560)
Q Consensus 285 ~~~~~v~~s~lei~~~~~~dll~~~ 309 (560)
...|.|.+||+|||+|.++|||...
T Consensus 124 ~~~~~v~vS~~EIy~e~v~DLL~~~ 148 (341)
T cd01372 124 EPDFQLKVSFLELYNEEVRDLLSPS 148 (341)
T ss_pred cceEEEEEEEEEeECCeeecCCCCc
Confidence 4578899999999999999999743
No 229
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=46.87 E-value=14 Score=38.89 Aligned_cols=26 Identities=27% Similarity=0.337 Sum_probs=21.1
Q ss_pred HHHHhcCCcEEEEEEcccCCCceEEe
Q psy7618 107 VNHMLHGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 107 v~~~l~G~N~~i~aYG~TgSGKTyTm 132 (560)
.+.+.+|.+..++..++||||||...
T Consensus 6 ~~~~~~~~~~~~~i~apTGsGKT~~~ 31 (357)
T TIGR03158 6 FEALQSKDADIIFNTAPTGAGKTLAW 31 (357)
T ss_pred HHHHHcCCCCEEEEECCCCCCHHHHH
Confidence 34567888888899999999999763
No 230
>KOG0739|consensus
Probab=46.87 E-value=9.3 Score=39.01 Aligned_cols=74 Identities=22% Similarity=0.465 Sum_probs=48.2
Q ss_pred eCCccccCCCcchhhhhccchHHH-HHHhcCCc---EEEEEEcccCCCceEEecc----------CCC-------CcChH
Q psy7618 84 TFDAVYGMQATQTEIYENSVRPMV-NHMLHGYN---VTIFAYGQTGTGKTFTMEG----------SQM-------ERGIM 142 (560)
Q Consensus 84 ~FD~VF~~~a~Q~~vf~~~~~plv-~~~l~G~N---~~i~aYG~TgSGKTyTm~G----------~~~-------~~Gii 142 (560)
..+.|-+-+..-+.+=+.++.|+- .++|.|.- ..|+-||+.|+||+|.--. +-. =-|--
T Consensus 131 kWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGES 210 (439)
T KOG0739|consen 131 KWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGES 210 (439)
T ss_pred chhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccH
Confidence 345565555555666666777773 67888865 6799999999999995321 000 12445
Q ss_pred HHHHHHHHHHHhhhc
Q psy7618 143 QNAFRQIFDFKQKEK 157 (560)
Q Consensus 143 pr~l~~lF~~~~~~~ 157 (560)
.+.+..||+...++.
T Consensus 211 EkLVknLFemARe~k 225 (439)
T KOG0739|consen 211 EKLVKNLFEMARENK 225 (439)
T ss_pred HHHHHHHHHHHHhcC
Confidence 667777777666554
No 231
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=46.66 E-value=7.4 Score=33.60 Aligned_cols=17 Identities=35% Similarity=0.513 Sum_probs=14.0
Q ss_pred EEEEEEcccCCCceEEe
Q psy7618 116 VTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyTm 132 (560)
-.+.-.|++|||||.++
T Consensus 16 e~v~I~GpSGsGKSTLl 32 (107)
T cd00820 16 VGVLITGDSGIGKTELA 32 (107)
T ss_pred EEEEEEcCCCCCHHHHH
Confidence 45677899999999865
No 232
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=46.64 E-value=12 Score=36.76 Aligned_cols=36 Identities=14% Similarity=0.152 Sum_probs=22.1
Q ss_pred hhhhccchHHHHHHhc-CCcEEEEEEcccCCCceEEe
Q psy7618 97 EIYENSVRPMVNHMLH-GYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 97 ~vf~~~~~plv~~~l~-G~N~~i~aYG~TgSGKTyTm 132 (560)
.+|..++.-+...+-. +....|.--|++|||||+.+
T Consensus 14 ~~~~~l~~~~~~~~~~~~~~~iigi~G~~GsGKTTl~ 50 (229)
T PRK09270 14 AVHKPLLRRLAALQAEPQRRTIVGIAGPPGAGKSTLA 50 (229)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHH
Confidence 4444444443333222 55566777899999999864
No 233
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=46.58 E-value=15 Score=36.11 Aligned_cols=28 Identities=32% Similarity=0.551 Sum_probs=21.6
Q ss_pred chHHHHHHhcC---CcEEEEEEcccCCCceE
Q psy7618 103 VRPMVNHMLHG---YNVTIFAYGQTGTGKTF 130 (560)
Q Consensus 103 ~~plv~~~l~G---~N~~i~aYG~TgSGKTy 130 (560)
+-+-+|.++.| ...+++.+|++|||||.
T Consensus 6 Gi~~LD~~l~GG~~~gs~~lI~G~pGsGKT~ 36 (237)
T TIGR03877 6 GIPGMDEILHGGIPERNVVLLSGGPGTGKSI 36 (237)
T ss_pred CcHhHHHHhcCCCcCCeEEEEEcCCCCCHHH
Confidence 34557777764 46789999999999985
No 234
>PRK06696 uridine kinase; Validated
Probab=46.48 E-value=14 Score=36.06 Aligned_cols=30 Identities=23% Similarity=0.347 Sum_probs=20.9
Q ss_pred chHHHHHHh---cCCcEEEEEEcccCCCceEEe
Q psy7618 103 VRPMVNHML---HGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 103 ~~plv~~~l---~G~N~~i~aYG~TgSGKTyTm 132 (560)
+..+.+.++ .+....|..-|.+|||||+.-
T Consensus 7 ~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA 39 (223)
T PRK06696 7 IKELAEHILTLNLTRPLRVAIDGITASGKTTFA 39 (223)
T ss_pred HHHHHHHHHHhCCCCceEEEEECCCCCCHHHHH
Confidence 334444554 456677888999999999753
No 235
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=46.43 E-value=12 Score=39.18 Aligned_cols=20 Identities=40% Similarity=0.649 Sum_probs=18.4
Q ss_pred cCCcEEEEEEcccCCCceEE
Q psy7618 112 HGYNVTIFAYGQTGTGKTFT 131 (560)
Q Consensus 112 ~G~N~~i~aYG~TgSGKTyT 131 (560)
.|+.-+|++.|++|+|||.-
T Consensus 20 ~Gi~f~im~~G~sG~GKttf 39 (373)
T COG5019 20 KGIDFTIMVVGESGLGKTTF 39 (373)
T ss_pred cCCceEEEEecCCCCchhHH
Confidence 69999999999999999963
No 236
>PHA02624 large T antigen; Provisional
Probab=46.30 E-value=12 Score=42.12 Aligned_cols=30 Identities=13% Similarity=0.165 Sum_probs=23.4
Q ss_pred HHHHHHhcCCcE--EEEEEcccCCCceEEecc
Q psy7618 105 PMVNHMLHGYNV--TIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 105 plv~~~l~G~N~--~i~aYG~TgSGKTyTm~G 134 (560)
.+++.++.|... ||+-||+.|||||+-..+
T Consensus 419 ~~lk~~l~giPKk~~il~~GPpnTGKTtf~~s 450 (647)
T PHA02624 419 DILKLIVENVPKRRYWLFKGPVNSGKTTLAAA 450 (647)
T ss_pred HHHHHHHhcCCCCeEEEEECCCCCCHHHHHHH
Confidence 346777778665 999999999999986544
No 237
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=46.29 E-value=6.9 Score=35.87 Aligned_cols=14 Identities=29% Similarity=0.525 Sum_probs=11.1
Q ss_pred EEEEcccCCCceEE
Q psy7618 118 IFAYGQTGTGKTFT 131 (560)
Q Consensus 118 i~aYG~TgSGKTyT 131 (560)
|+..|++|||||+.
T Consensus 1 i~l~G~~GsGKSTl 14 (163)
T TIGR01313 1 FVLMGVAGSGKSTI 14 (163)
T ss_pred CEEECCCCCCHHHH
Confidence 45679999999853
No 238
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=46.12 E-value=12 Score=43.05 Aligned_cols=35 Identities=26% Similarity=0.458 Sum_probs=25.6
Q ss_pred hhhhccchHHHHHHh-cCCcEEEEEEcccCCCceEEe
Q psy7618 97 EIYENSVRPMVNHML-HGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 97 ~vf~~~~~plv~~~l-~G~N~~i~aYG~TgSGKTyTm 132 (560)
.||.- +......++ .|.|-||+.-|.+|||||.|.
T Consensus 70 Hifai-A~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 105 (674)
T cd01384 70 HVFAI-ADAAYRAMINEGKSQSILVSGESGAGKTETT 105 (674)
T ss_pred CHHHH-HHHHHHHHHHcCCCceEEEECCCCCCchhHH
Confidence 45543 333333333 689999999999999999986
No 239
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=45.88 E-value=15 Score=40.00 Aligned_cols=21 Identities=38% Similarity=0.401 Sum_probs=17.1
Q ss_pred CcEEEEEEcccCCCceEEecc
Q psy7618 114 YNVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 114 ~N~~i~aYG~TgSGKTyTm~G 134 (560)
.-..|+-+|.+|+|||+|..-
T Consensus 94 ~p~vI~lvG~~GsGKTTtaak 114 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAK 114 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHH
Confidence 346788899999999999643
No 240
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=45.83 E-value=16 Score=40.60 Aligned_cols=25 Identities=28% Similarity=0.502 Sum_probs=19.6
Q ss_pred HHHHHhcCCcEEEEEEcccCCCceEEe
Q psy7618 106 MVNHMLHGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 106 lv~~~l~G~N~~i~aYG~TgSGKTyTm 132 (560)
.+..++.|.| +++..+||||||.+.
T Consensus 151 aip~il~g~d--viv~ApTGSGKTlay 175 (518)
T PLN00206 151 AIPAALSGRS--LLVSADTGSGKTASF 175 (518)
T ss_pred HHHHHhcCCC--EEEEecCCCCccHHH
Confidence 3556678887 578889999999764
No 241
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=45.74 E-value=14 Score=42.38 Aligned_cols=36 Identities=25% Similarity=0.324 Sum_probs=26.4
Q ss_pred hhhhhccchHHHHHHh-cCCcEEEEEEcccCCCceEEe
Q psy7618 96 TEIYENSVRPMVNHML-HGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 96 ~~vf~~~~~plv~~~l-~G~N~~i~aYG~TgSGKTyTm 132 (560)
-.||.- +......++ .|.|-||+.-|.+|||||.|.
T Consensus 67 PHifav-A~~Ay~~m~~~~~~QsIiisGESGaGKTes~ 103 (671)
T cd01381 67 PHIFAI-SDNAYTNMQREKKNQCIIISGESGAGKTEST 103 (671)
T ss_pred CCHHHH-HHHHHHHHHHcCCCceEEEEcCCCCCeehHH
Confidence 346643 333344444 689999999999999999986
No 242
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=45.72 E-value=14 Score=42.47 Aligned_cols=36 Identities=31% Similarity=0.462 Sum_probs=27.2
Q ss_pred hhhhhccchHHHHHHh-cCCcEEEEEEcccCCCceEEe
Q psy7618 96 TEIYENSVRPMVNHML-HGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 96 ~~vf~~~~~plv~~~l-~G~N~~i~aYG~TgSGKTyTm 132 (560)
-.||.- +......++ .|.|-||+.-|.+|||||.|.
T Consensus 73 PHifai-A~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 109 (677)
T cd01383 73 PHVYAI-ADTAYNEMMRDEVNQSIIISGESGAGKTETA 109 (677)
T ss_pred CCHHHH-HHHHHHHHHHcCCCceEEEecCCCCCcchHH
Confidence 356654 444444444 589999999999999999986
No 243
>KOG0652|consensus
Probab=45.61 E-value=9.7 Score=38.09 Aligned_cols=14 Identities=50% Similarity=0.975 Sum_probs=12.4
Q ss_pred EEEEEcccCCCceE
Q psy7618 117 TIFAYGQTGTGKTF 130 (560)
Q Consensus 117 ~i~aYG~TgSGKTy 130 (560)
.++.||+.|+|||.
T Consensus 207 GvLmYGPPGTGKTl 220 (424)
T KOG0652|consen 207 GVLMYGPPGTGKTL 220 (424)
T ss_pred ceEeeCCCCCcHHH
Confidence 48999999999974
No 244
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=45.50 E-value=7.9 Score=34.82 Aligned_cols=15 Identities=40% Similarity=0.556 Sum_probs=13.0
Q ss_pred EEEEEcccCCCceEE
Q psy7618 117 TIFAYGQTGTGKTFT 131 (560)
Q Consensus 117 ~i~aYG~TgSGKTyT 131 (560)
+|+.+|.+|||||+.
T Consensus 1 ~i~l~G~~GsGKstl 15 (154)
T cd00464 1 NIVLIGMMGAGKTTV 15 (154)
T ss_pred CEEEEcCCCCCHHHH
Confidence 478999999999875
No 245
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=45.49 E-value=7.3 Score=42.75 Aligned_cols=19 Identities=37% Similarity=0.359 Sum_probs=16.3
Q ss_pred EEEEEEcccCCCceEEecc
Q psy7618 116 VTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyTm~G 134 (560)
..+.-.|+||+|||.|+--
T Consensus 257 ~Vi~LvGpnGvGKTTTiaK 275 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAK 275 (484)
T ss_pred cEEEEECCCCccHHHHHHH
Confidence 5788899999999999744
No 246
>PRK14974 cell division protein FtsY; Provisional
Probab=45.46 E-value=14 Score=38.76 Aligned_cols=20 Identities=45% Similarity=0.532 Sum_probs=17.0
Q ss_pred cEEEEEEcccCCCceEEecc
Q psy7618 115 NVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 115 N~~i~aYG~TgSGKTyTm~G 134 (560)
...|.-.|++|+|||.|+--
T Consensus 140 ~~vi~~~G~~GvGKTTtiak 159 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAK 159 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHH
Confidence 46899999999999998643
No 247
>PHA01747 putative ATP-dependent protease
Probab=45.36 E-value=8.8 Score=40.39 Aligned_cols=31 Identities=29% Similarity=0.409 Sum_probs=26.4
Q ss_pred cchHHHHHHhcCCcEEEEEEcccCCCceEEe
Q psy7618 102 SVRPMVNHMLHGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 102 ~~~plv~~~l~G~N~~i~aYG~TgSGKTyTm 132 (560)
-.-|+|+.-..+.|.-++=.|+.|+||||+.
T Consensus 177 RLiPlVE~~~~~~NyNliELgPRGTGKS~~f 207 (425)
T PHA01747 177 RLLPLFTSPVSKRPVHIIELSNRGTGKTTTF 207 (425)
T ss_pred hhhhheeccCCCCCeeEEEecCCCCChhhHH
Confidence 3667887667889999999999999999973
No 248
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=45.25 E-value=8.7 Score=36.09 Aligned_cols=14 Identities=36% Similarity=0.617 Sum_probs=12.2
Q ss_pred EEEEcccCCCceEE
Q psy7618 118 IFAYGQTGTGKTFT 131 (560)
Q Consensus 118 i~aYG~TgSGKTyT 131 (560)
|+.+|++|||||+.
T Consensus 2 I~i~G~pGsGKst~ 15 (194)
T cd01428 2 ILLLGPPGSGKGTQ 15 (194)
T ss_pred EEEECCCCCCHHHH
Confidence 78999999999854
No 249
>KOG0340|consensus
Probab=45.23 E-value=16 Score=38.14 Aligned_cols=29 Identities=24% Similarity=0.437 Sum_probs=23.3
Q ss_pred HHHHHHhcCCcEEEEEEcccCCCceEEeccC
Q psy7618 105 PMVNHMLHGYNVTIFAYGQTGTGKTFTMEGS 135 (560)
Q Consensus 105 plv~~~l~G~N~~i~aYG~TgSGKTyTm~G~ 135 (560)
.+|..+|+|.+| +....||||||..+-++
T Consensus 36 ~cIpkILeGrdc--ig~AkTGsGKT~AFaLP 64 (442)
T KOG0340|consen 36 ACIPKILEGRDC--IGCAKTGSGKTAAFALP 64 (442)
T ss_pred hhhHHHhccccc--ccccccCCCcchhhhHH
Confidence 356778899997 56778999999988764
No 250
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=45.13 E-value=7.6 Score=36.18 Aligned_cols=16 Identities=31% Similarity=0.646 Sum_probs=14.0
Q ss_pred EEEEEcccCCCceEEe
Q psy7618 117 TIFAYGQTGTGKTFTM 132 (560)
Q Consensus 117 ~i~aYG~TgSGKTyTm 132 (560)
.|+..|++|||||..+
T Consensus 3 ~~~i~G~sGsGKttl~ 18 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLL 18 (179)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788999999999876
No 251
>CHL00181 cbbX CbbX; Provisional
Probab=45.10 E-value=8.6 Score=39.27 Aligned_cols=15 Identities=40% Similarity=0.465 Sum_probs=13.0
Q ss_pred EEEEcccCCCceEEe
Q psy7618 118 IFAYGQTGTGKTFTM 132 (560)
Q Consensus 118 i~aYG~TgSGKTyTm 132 (560)
++-||++|+|||+..
T Consensus 62 ill~G~pGtGKT~lA 76 (287)
T CHL00181 62 MSFTGSPGTGKTTVA 76 (287)
T ss_pred EEEECCCCCCHHHHH
Confidence 777999999999763
No 252
>KOG1547|consensus
Probab=45.05 E-value=18 Score=35.80 Aligned_cols=20 Identities=35% Similarity=0.712 Sum_probs=18.5
Q ss_pred cCCcEEEEEEcccCCCceEE
Q psy7618 112 HGYNVTIFAYGQTGTGKTFT 131 (560)
Q Consensus 112 ~G~N~~i~aYG~TgSGKTyT 131 (560)
.||...|+..||+|.|||..
T Consensus 43 ~GF~FNIMVVgqSglgkstl 62 (336)
T KOG1547|consen 43 TGFDFNIMVVGQSGLGKSTL 62 (336)
T ss_pred ccCceEEEEEecCCCCchhh
Confidence 89999999999999999854
No 253
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=44.81 E-value=14 Score=42.41 Aligned_cols=36 Identities=22% Similarity=0.349 Sum_probs=26.9
Q ss_pred hhhhhccchHHHHHHh-cCCcEEEEEEcccCCCceEEe
Q psy7618 96 TEIYENSVRPMVNHML-HGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 96 ~~vf~~~~~plv~~~l-~G~N~~i~aYG~TgSGKTyTm 132 (560)
-.||.- +......++ .|.|-||+.-|.+|||||.|.
T Consensus 68 PHifav-A~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 104 (677)
T cd01387 68 PHLFAI-ANLAFAKMLDAKQNQCVIISGESGSGKTEAT 104 (677)
T ss_pred CCHHHH-HHHHHHHHHhcCCCceEEEEcCCCCCeehHH
Confidence 346654 444444444 689999999999999999986
No 254
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=44.80 E-value=7.6 Score=37.92 Aligned_cols=15 Identities=27% Similarity=0.629 Sum_probs=11.9
Q ss_pred EEEEcccCCCceEEe
Q psy7618 118 IFAYGQTGTGKTFTM 132 (560)
Q Consensus 118 i~aYG~TgSGKTyTm 132 (560)
+.-.|++|||||+.+
T Consensus 31 v~iiGpSGSGKSTlL 45 (240)
T COG1126 31 VVIIGPSGSGKSTLL 45 (240)
T ss_pred EEEECCCCCCHHHHH
Confidence 445799999999754
No 255
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=44.47 E-value=14 Score=40.56 Aligned_cols=26 Identities=35% Similarity=0.460 Sum_probs=19.8
Q ss_pred HHHHHHhcCCcEEEEEEcccCCCceEEe
Q psy7618 105 PMVNHMLHGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 105 plv~~~l~G~N~~i~aYG~TgSGKTyTm 132 (560)
..+..+++|.|.. ...+||||||.+.
T Consensus 116 ~ai~~~~~G~dvi--~~apTGSGKTlay 141 (475)
T PRK01297 116 QVLGYTLAGHDAI--GRAQTGTGKTAAF 141 (475)
T ss_pred HHHHHHhCCCCEE--EECCCCChHHHHH
Confidence 3566778999865 4669999999764
No 256
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=44.31 E-value=15 Score=41.69 Aligned_cols=25 Identities=24% Similarity=0.454 Sum_probs=18.1
Q ss_pred HHHHHhcCCcEEEEEEcccCCCceEEe
Q psy7618 106 MVNHMLHGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 106 lv~~~l~G~N~~i~aYG~TgSGKTyTm 132 (560)
++..+++|.++. +.++||||||.+.
T Consensus 33 ai~~il~g~dvl--v~apTGsGKTl~y 57 (607)
T PRK11057 33 IIDAVLSGRDCL--VVMPTGGGKSLCY 57 (607)
T ss_pred HHHHHHcCCCEE--EEcCCCchHHHHH
Confidence 344567898865 4579999999753
No 257
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=44.05 E-value=15 Score=41.30 Aligned_cols=24 Identities=38% Similarity=0.512 Sum_probs=19.4
Q ss_pred HHHHhcCCcEEEEEEcccCCCceEEe
Q psy7618 107 VNHMLHGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 107 v~~~l~G~N~~i~aYG~TgSGKTyTm 132 (560)
+..+++|.| |++..+||||||.+.
T Consensus 40 ip~~l~G~D--vi~~ApTGSGKTlaf 63 (572)
T PRK04537 40 LPVALPGGD--VAGQAQTGTGKTLAF 63 (572)
T ss_pred HHHHhCCCC--EEEEcCCCCcHHHHH
Confidence 456789998 567899999999764
No 258
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=44.04 E-value=18 Score=34.93 Aligned_cols=32 Identities=22% Similarity=0.303 Sum_probs=24.5
Q ss_pred cchHHHHHHhcC-C--cEEEEEEcccCCCceEEec
Q psy7618 102 SVRPMVNHMLHG-Y--NVTIFAYGQTGTGKTFTME 133 (560)
Q Consensus 102 ~~~plv~~~l~G-~--N~~i~aYG~TgSGKTyTm~ 133 (560)
++-+-+|.++.| + ...+.-+|++|+|||..+.
T Consensus 3 tG~~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~ 37 (226)
T cd01393 3 TGSKALDELLGGGIPTGRITEIFGEFGSGKTQLCL 37 (226)
T ss_pred CCcHHHHHHhCCCCcCCcEEEEeCCCCCChhHHHH
Confidence 355678888864 2 5678899999999998754
No 259
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=43.81 E-value=13 Score=42.29 Aligned_cols=42 Identities=24% Similarity=0.449 Sum_probs=29.2
Q ss_pred eeCCccccCCCcchhhhhccchHHHHHHhcCCcEEEEEEcccCCCceEEe
Q psy7618 83 FTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 83 F~FD~VF~~~a~Q~~vf~~~~~plv~~~l~G~N~~i~aYG~TgSGKTyTm 132 (560)
-+||.+++ |...... ++..+..++...++-||++|+|||+..
T Consensus 151 ~~~~~iiG----qs~~~~~----l~~~ia~~~~~~vlL~Gp~GtGKTTLA 192 (615)
T TIGR02903 151 RAFSEIVG----QERAIKA----LLAKVASPFPQHIILYGPPGVGKTTAA 192 (615)
T ss_pred CcHHhcee----CcHHHHH----HHHHHhcCCCCeEEEECCCCCCHHHHH
Confidence 46677764 3444433 445556677778999999999999865
No 260
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=43.72 E-value=20 Score=34.56 Aligned_cols=31 Identities=29% Similarity=0.341 Sum_probs=23.1
Q ss_pred chHHHHHHhc-CC--cEEEEEEcccCCCceEEec
Q psy7618 103 VRPMVNHMLH-GY--NVTIFAYGQTGTGKTFTME 133 (560)
Q Consensus 103 ~~plv~~~l~-G~--N~~i~aYG~TgSGKTyTm~ 133 (560)
.-+-+|.++. |+ ...+..+|++|||||....
T Consensus 4 Gi~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~ 37 (218)
T cd01394 4 GCKGLDELLGGGVERGTVTQVYGPPGTGKTNIAI 37 (218)
T ss_pred chhHHHHHhcCCccCCeEEEEECCCCCCHHHHHH
Confidence 4456788886 43 4568899999999998643
No 261
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=43.65 E-value=14 Score=42.21 Aligned_cols=19 Identities=26% Similarity=0.457 Sum_probs=15.3
Q ss_pred CcEEEEEEcccCCCceEEe
Q psy7618 114 YNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 114 ~N~~i~aYG~TgSGKTyTm 132 (560)
....++..|+||||||...
T Consensus 255 ~~~~~Ll~g~TGSGKT~va 273 (630)
T TIGR00643 255 VPMNRLLQGDVGSGKTLVA 273 (630)
T ss_pred CCccEEEECCCCCcHHHHH
Confidence 3345799999999999864
No 262
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=43.64 E-value=15 Score=42.21 Aligned_cols=36 Identities=25% Similarity=0.328 Sum_probs=26.4
Q ss_pred hhhhhccchHHHHHHh-cCCcEEEEEEcccCCCceEEe
Q psy7618 96 TEIYENSVRPMVNHML-HGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 96 ~~vf~~~~~plv~~~l-~G~N~~i~aYG~TgSGKTyTm 132 (560)
-.||.- +......++ .|.|-||+.-|.+|||||.|.
T Consensus 67 PHifai-A~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 103 (674)
T cd01378 67 PHIYAL-ADNAYRSMKSENENQCVIISGESGAGKTEAA 103 (674)
T ss_pred CCHHHH-HHHHHHHHHHcCCCceEEEEcCCCCCcchHH
Confidence 346653 333334444 689999999999999999986
No 263
>KOG0354|consensus
Probab=43.50 E-value=17 Score=41.65 Aligned_cols=43 Identities=35% Similarity=0.408 Sum_probs=28.9
Q ss_pred CccccCCCcchhhhhcc------chHHHHHHhcCCcEEEEEEcccCCCceEE
Q psy7618 86 DAVYGMQATQTEIYENS------VRPMVNHMLHGYNVTIFAYGQTGTGKTFT 131 (560)
Q Consensus 86 D~VF~~~a~Q~~vf~~~------~~plv~~~l~G~N~~i~aYG~TgSGKTyT 131 (560)
++-+++++-|..+|..- -..+++.+| |.|..|- =+||+|||+-
T Consensus 44 ~~~~~~s~~~~~~~p~~~~lR~YQ~eivq~AL-gkNtii~--lPTG~GKTfI 92 (746)
T KOG0354|consen 44 SHSLDESAAQRWIYPTNLELRNYQEELVQPAL-GKNTIIA--LPTGSGKTFI 92 (746)
T ss_pred cCCCChhhhccccccCcccccHHHHHHhHHhh-cCCeEEE--eecCCCccch
Confidence 34445555555555432 345788899 9998554 4999999985
No 264
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=43.28 E-value=14 Score=42.65 Aligned_cols=36 Identities=25% Similarity=0.388 Sum_probs=27.6
Q ss_pred hhhhhccchHHHHHHh-cCCcEEEEEEcccCCCceEEe
Q psy7618 96 TEIYENSVRPMVNHML-HGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 96 ~~vf~~~~~plv~~~l-~G~N~~i~aYG~TgSGKTyTm 132 (560)
-.+|.- +......++ .|.|-||+.-|.+|||||.+.
T Consensus 67 PHifav-A~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 103 (679)
T cd00124 67 PHVFAI-ADRAYRNMLRDRRNQSIIISGESGAGKTENT 103 (679)
T ss_pred CCHHHH-HHHHHHHHHhcCCCceEEEecCCCCCchHHH
Confidence 456653 444455555 589999999999999999986
No 265
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=43.16 E-value=14 Score=42.53 Aligned_cols=36 Identities=28% Similarity=0.371 Sum_probs=26.1
Q ss_pred hhhhhccchHHHHHHh-cCCcEEEEEEcccCCCceEEe
Q psy7618 96 TEIYENSVRPMVNHML-HGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 96 ~~vf~~~~~plv~~~l-~G~N~~i~aYG~TgSGKTyTm 132 (560)
-.||.- +......++ .|.|-||+.-|.+|||||.|.
T Consensus 75 PHiy~i-A~~Ay~~m~~~~~~QsIiisGESGAGKTet~ 111 (692)
T cd01385 75 PHIFAI-ADVAYYNMLRKKVNQCIVISGESGSGKTEST 111 (692)
T ss_pred CCHHHH-HHHHHHHHHhcCCCceEEEecCCCCCchHHH
Confidence 345643 333334433 689999999999999999986
No 266
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=43.10 E-value=10 Score=38.67 Aligned_cols=38 Identities=26% Similarity=0.212 Sum_probs=25.6
Q ss_pred CCCcchhhhhccchHHHHHHhcCCcEEEEEEcccCCCceEEecc
Q psy7618 91 MQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 91 ~~a~Q~~vf~~~~~plv~~~l~G~N~~i~aYG~TgSGKTyTm~G 134 (560)
+...|.++-+. +.+.+-+|.+ ++.=.+||+|||.+.+-
T Consensus 9 ~r~~Q~~~m~~----v~~~~~~~~~--~~~eapTGtGKTl~~L~ 46 (289)
T smart00489 9 PYPIQYEFMEE----LKRVLDRGKI--GILESPTGTGKTLSLLC 46 (289)
T ss_pred CCHHHHHHHHH----HHHHHHcCCc--EEEECCCCcchhHHHHH
Confidence 35667766555 4444556754 56778999999988643
No 267
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=43.10 E-value=10 Score=38.67 Aligned_cols=38 Identities=26% Similarity=0.212 Sum_probs=25.6
Q ss_pred CCCcchhhhhccchHHHHHHhcCCcEEEEEEcccCCCceEEecc
Q psy7618 91 MQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 91 ~~a~Q~~vf~~~~~plv~~~l~G~N~~i~aYG~TgSGKTyTm~G 134 (560)
+...|.++-+. +.+.+-+|.+ ++.=.+||+|||.+.+-
T Consensus 9 ~r~~Q~~~m~~----v~~~~~~~~~--~~~eapTGtGKTl~~L~ 46 (289)
T smart00488 9 PYPIQYEFMEE----LKRVLDRGKI--GILESPTGTGKTLSLLC 46 (289)
T ss_pred CCHHHHHHHHH----HHHHHHcCCc--EEEECCCCcchhHHHHH
Confidence 35667766555 4444556754 56778999999988643
No 268
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=42.89 E-value=9.4 Score=40.76 Aligned_cols=19 Identities=37% Similarity=0.545 Sum_probs=13.4
Q ss_pred EEEEEEcccCCCceEEecc
Q psy7618 116 VTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyTm~G 134 (560)
--++..|.||||||.+|..
T Consensus 16 ~~~li~G~~GsGKT~~i~~ 34 (386)
T PF10412_consen 16 RHILIIGATGSGKTQAIRH 34 (386)
T ss_dssp G-EEEEE-TTSSHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHH
Confidence 3478899999999976543
No 269
>PRK06217 hypothetical protein; Validated
Probab=42.88 E-value=9.9 Score=35.76 Aligned_cols=14 Identities=36% Similarity=0.546 Sum_probs=12.3
Q ss_pred EEEEcccCCCceEE
Q psy7618 118 IFAYGQTGTGKTFT 131 (560)
Q Consensus 118 i~aYG~TgSGKTyT 131 (560)
|+-.|.+|||||+.
T Consensus 4 I~i~G~~GsGKSTl 17 (183)
T PRK06217 4 IHITGASGSGTTTL 17 (183)
T ss_pred EEEECCCCCCHHHH
Confidence 78899999999864
No 270
>PRK10865 protein disaggregation chaperone; Provisional
Probab=42.88 E-value=14 Score=43.84 Aligned_cols=17 Identities=35% Similarity=0.405 Sum_probs=14.7
Q ss_pred EEEEEEcccCCCceEEe
Q psy7618 116 VTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyTm 132 (560)
+.++-+|++|+|||++.
T Consensus 599 ~~~Lf~Gp~G~GKT~lA 615 (857)
T PRK10865 599 GSFLFLGPTGVGKTELC 615 (857)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 57888899999999964
No 271
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=42.64 E-value=13 Score=43.07 Aligned_cols=35 Identities=20% Similarity=0.309 Sum_probs=25.9
Q ss_pred hhhhccchHHHHHHh-cCCcEEEEEEcccCCCceEEe
Q psy7618 97 EIYENSVRPMVNHML-HGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 97 ~vf~~~~~plv~~~l-~G~N~~i~aYG~TgSGKTyTm 132 (560)
.||.- +......++ .|.|-||+.-|.+|||||.|.
T Consensus 73 Hifai-A~~Ay~~m~~~~~~QsIiisGESGaGKTes~ 108 (717)
T cd01382 73 HVFAI-ADKAYRDMKVLKMSQSIIVSGESGAGKTENT 108 (717)
T ss_pred cHHHH-HHHHHHHHHhcCCCCeEEEecCCCCChhHHH
Confidence 45543 333344443 689999999999999999986
No 272
>PRK14531 adenylate kinase; Provisional
Probab=42.52 E-value=10 Score=35.68 Aligned_cols=15 Identities=27% Similarity=0.501 Sum_probs=13.0
Q ss_pred EEEEEcccCCCceEE
Q psy7618 117 TIFAYGQTGTGKTFT 131 (560)
Q Consensus 117 ~i~aYG~TgSGKTyT 131 (560)
-|+.+|+.|||||+.
T Consensus 4 ~i~i~G~pGsGKsT~ 18 (183)
T PRK14531 4 RLLFLGPPGAGKGTQ 18 (183)
T ss_pred EEEEECCCCCCHHHH
Confidence 378899999999875
No 273
>PRK05580 primosome assembly protein PriA; Validated
Probab=42.45 E-value=15 Score=42.39 Aligned_cols=18 Identities=33% Similarity=0.357 Sum_probs=15.0
Q ss_pred EEEEEEcccCCCceEEec
Q psy7618 116 VTIFAYGQTGTGKTFTME 133 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyTm~ 133 (560)
..++.+|+||||||...+
T Consensus 163 ~~~Ll~~~TGSGKT~v~l 180 (679)
T PRK05580 163 SPFLLDGVTGSGKTEVYL 180 (679)
T ss_pred CcEEEECCCCChHHHHHH
Confidence 458999999999997653
No 274
>PRK01172 ski2-like helicase; Provisional
Probab=42.29 E-value=16 Score=41.96 Aligned_cols=21 Identities=29% Similarity=0.417 Sum_probs=16.5
Q ss_pred HHhcCCcEEEEEEcccCCCceEE
Q psy7618 109 HMLHGYNVTIFAYGQTGTGKTFT 131 (560)
Q Consensus 109 ~~l~G~N~~i~aYG~TgSGKTyT 131 (560)
.+.+|.| ++..++||||||..
T Consensus 33 ~l~~~~n--vlv~apTGSGKTl~ 53 (674)
T PRK01172 33 QLRKGEN--VIVSVPTAAGKTLI 53 (674)
T ss_pred HHhcCCc--EEEECCCCchHHHH
Confidence 4467776 57778999999975
No 275
>TIGR03744 traC_PFL_4706 conjugative transfer ATPase, PFL_4706 family. Members of this protein family are predicted ATP-binding proteins apparently associated with DNA conjugal transfer. Members are found both in plasmids and in bacterial chromosomal regions that appear to derive from integrative elements such as conjugative transposons. More distant homologs, outside the scope of this family, include type IV secretion/conjugal transfer proteins such as TraC, VirB4 and TrsE. The granularity of this protein family definition is chosen so as to represent one distinctive clade and act as a marker through which to define and recognize the class of mobile element it serves.
Probab=42.23 E-value=8.3 Score=45.90 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=18.8
Q ss_pred CCcEEEEEEcccCCCceEEecc
Q psy7618 113 GYNVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 113 G~N~~i~aYG~TgSGKTyTm~G 134 (560)
..|+-.+..|+||||||++|..
T Consensus 473 ~~n~n~~I~G~TGSGKS~l~~~ 494 (893)
T TIGR03744 473 KKNAHLLILGPTGAGKSATLTN 494 (893)
T ss_pred CCcccEEEECCCCCCHHHHHHH
Confidence 3488889999999999999854
No 276
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=42.12 E-value=18 Score=37.61 Aligned_cols=40 Identities=13% Similarity=0.321 Sum_probs=23.2
Q ss_pred CCCcchhhhhc-cchHHHHHHhcCCcEEEEEEcccCCCceEEe
Q psy7618 91 MQATQTEIYEN-SVRPMVNHMLHGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 91 ~~a~Q~~vf~~-~~~plv~~~l~G~N~~i~aYG~TgSGKTyTm 132 (560)
|..+..-+|+. +.+.++-.+.. +.-|+-.|++|+|||...
T Consensus 41 p~~d~~y~f~~~~~~~vl~~l~~--~~~ilL~G~pGtGKTtla 81 (327)
T TIGR01650 41 PDIDPAYLFDKATTKAICAGFAY--DRRVMVQGYHGTGKSTHI 81 (327)
T ss_pred CCCCCCccCCHHHHHHHHHHHhc--CCcEEEEeCCCChHHHHH
Confidence 33333444442 23334444433 445889999999999753
No 277
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=42.11 E-value=8.9 Score=41.04 Aligned_cols=19 Identities=47% Similarity=0.538 Sum_probs=16.3
Q ss_pred EEEEEEcccCCCceEEecc
Q psy7618 116 VTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyTm~G 134 (560)
..|+-.|++|+|||+|+.-
T Consensus 242 ~vI~LVGptGvGKTTTiaK 260 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAK 260 (436)
T ss_pred cEEEEECCCCCcHHHHHHH
Confidence 5788999999999999643
No 278
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=42.06 E-value=12 Score=34.81 Aligned_cols=15 Identities=40% Similarity=0.452 Sum_probs=12.8
Q ss_pred EEEEcccCCCceEEe
Q psy7618 118 IFAYGQTGTGKTFTM 132 (560)
Q Consensus 118 i~aYG~TgSGKTyTm 132 (560)
++.+|++|+|||...
T Consensus 2 ~li~G~~G~GKT~l~ 16 (187)
T cd01124 2 TLLSGGPGTGKTTFA 16 (187)
T ss_pred EEEEcCCCCCHHHHH
Confidence 678999999999753
No 279
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=42.02 E-value=9.1 Score=40.71 Aligned_cols=20 Identities=45% Similarity=0.479 Sum_probs=16.6
Q ss_pred cEEEEEEcccCCCceEEecc
Q psy7618 115 NVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 115 N~~i~aYG~TgSGKTyTm~G 134 (560)
.-.|+-.|++|+|||+|+..
T Consensus 206 ~~ii~lvGptGvGKTTt~ak 225 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVK 225 (407)
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 34678899999999999765
No 280
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=41.95 E-value=15 Score=42.49 Aligned_cols=36 Identities=28% Similarity=0.385 Sum_probs=26.8
Q ss_pred hhhhhccchHHHHHHh-cCCcEEEEEEcccCCCceEEe
Q psy7618 96 TEIYENSVRPMVNHML-HGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 96 ~~vf~~~~~plv~~~l-~G~N~~i~aYG~TgSGKTyTm 132 (560)
-.||.- +......++ .|.|-||+.-|.+|||||.|.
T Consensus 72 PHiyai-A~~Ay~~m~~~~~~QsIiiSGESGAGKTes~ 108 (693)
T cd01377 72 PHIFAI-ADNAYRSMLQDRENQSILITGESGAGKTENT 108 (693)
T ss_pred CCHHHH-HHHHHHHHHhcCCCceEEEEcCCCCCchHHH
Confidence 456653 444444444 689999999999999999986
No 281
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=41.86 E-value=8.3 Score=39.91 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=17.3
Q ss_pred CCcEEEEEEcccCCCceEEecc
Q psy7618 113 GYNVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 113 G~N~~i~aYG~TgSGKTyTm~G 134 (560)
-...+|+-.|.||||||++|.-
T Consensus 141 e~~~siii~G~t~sGKTt~lna 162 (312)
T COG0630 141 EARKSIIICGGTASGKTTLLNA 162 (312)
T ss_pred HcCCcEEEECCCCCCHHHHHHH
Confidence 3445578899999999998754
No 282
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=41.83 E-value=8.4 Score=45.18 Aligned_cols=21 Identities=38% Similarity=0.597 Sum_probs=17.3
Q ss_pred CcEEEEEEcccCCCceEEecc
Q psy7618 114 YNVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 114 ~N~~i~aYG~TgSGKTyTm~G 134 (560)
-|..++..|.||||||++|..
T Consensus 429 ~n~n~~I~G~tGsGKS~~~~~ 449 (797)
T TIGR02746 429 TNYNIAVVGGSGAGKSFFMQE 449 (797)
T ss_pred CccceEEEcCCCCCHHHHHHH
Confidence 355678899999999999854
No 283
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=41.52 E-value=10 Score=43.13 Aligned_cols=41 Identities=20% Similarity=0.271 Sum_probs=24.8
Q ss_pred CcchhhhhccchHHHHHHhcCC--cEEEEEEcccCCCceEEecc
Q psy7618 93 ATQTEIYENSVRPMVNHMLHGY--NVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 93 a~Q~~vf~~~~~plv~~~l~G~--N~~i~aYG~TgSGKTyTm~G 134 (560)
+.|++..+. ++.++..+..+. .-.++-||++|+|||.++.-
T Consensus 87 ~~~~~ki~~-l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~ 129 (637)
T TIGR00602 87 AVHKKKIEE-VETWLKAQVLENAPKRILLITGPSGCGKSTTIKI 129 (637)
T ss_pred cCcHHHHHH-HHHHHHhcccccCCCcEEEEECCCCCCHHHHHHH
Confidence 444554444 344444443332 22488899999999998753
No 284
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=41.35 E-value=11 Score=41.75 Aligned_cols=51 Identities=29% Similarity=0.472 Sum_probs=28.0
Q ss_pred eeeCCccccCCCcchhhhhccchHHHH-HHhc--C--CcEEEEEEcccCCCceEEec
Q psy7618 82 RFTFDAVYGMQATQTEIYENSVRPMVN-HMLH--G--YNVTIFAYGQTGTGKTFTME 133 (560)
Q Consensus 82 ~F~FD~VF~~~a~Q~~vf~~~~~plv~-~~l~--G--~N~~i~aYG~TgSGKTyTm~ 133 (560)
..+||.|.+.+...+++-+ ++..+-. ..+. | ..-.++-||++|+|||+..-
T Consensus 51 ~~~~~di~g~~~~k~~l~~-~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~ 106 (495)
T TIGR01241 51 KVTFKDVAGIDEAKEELME-IVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAK 106 (495)
T ss_pred CCCHHHhCCHHHHHHHHHH-HHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHH
Confidence 4677877665544443332 2222110 0111 2 22358889999999998863
No 285
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=41.32 E-value=11 Score=38.50 Aligned_cols=16 Identities=38% Similarity=0.441 Sum_probs=13.8
Q ss_pred EEEEEcccCCCceEEe
Q psy7618 117 TIFAYGQTGTGKTFTM 132 (560)
Q Consensus 117 ~i~aYG~TgSGKTyTm 132 (560)
-++-+|++|+|||+.-
T Consensus 60 ~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVA 75 (284)
T ss_pred eEEEEcCCCCCHHHHH
Confidence 5889999999999763
No 286
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=41.18 E-value=14 Score=40.81 Aligned_cols=44 Identities=25% Similarity=0.523 Sum_probs=31.3
Q ss_pred CceeeeCCccccCCCcchhhhhccchHHHHHHhcCCcEEEEEEcccCCCc
Q psy7618 79 KARRFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGK 128 (560)
Q Consensus 79 ~~~~F~FD~VF~~~a~Q~~vf~~~~~plv~~~l~G~N~~i~aYG~TgSGK 128 (560)
....|+||.+.+....-.++-+ ++ .-..+.+++|+-+|.||+||
T Consensus 238 ~~a~y~f~~Iig~S~~m~~~~~-----~a-kr~A~tdstVLi~GESGTGK 281 (560)
T COG3829 238 LKAKYTFDDIIGESPAMLRVLE-----LA-KRIAKTDSTVLILGESGTGK 281 (560)
T ss_pred cccccchhhhccCCHHHHHHHH-----HH-HhhcCCCCcEEEecCCCccH
Confidence 3456999999876543332222 22 34578999999999999999
No 287
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=40.95 E-value=11 Score=38.08 Aligned_cols=20 Identities=35% Similarity=0.429 Sum_probs=15.4
Q ss_pred cEEEEEEcccCCCceEEecc
Q psy7618 115 NVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 115 N~~i~aYG~TgSGKTyTm~G 134 (560)
..+|...|++|+|||.|..-
T Consensus 72 ~~vi~l~G~~G~GKTTt~ak 91 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAK 91 (272)
T ss_pred CeEEEEECCCCCcHHHHHHH
Confidence 34666669999999999644
No 288
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=40.79 E-value=22 Score=35.61 Aligned_cols=30 Identities=20% Similarity=0.264 Sum_probs=23.1
Q ss_pred chHHHHHHhc--CCcEEEEEEcccCCCceEEe
Q psy7618 103 VRPMVNHMLH--GYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 103 ~~plv~~~l~--G~N~~i~aYG~TgSGKTyTm 132 (560)
+..+.+.+.+ .-...|.-+|..|.|||...
T Consensus 5 ~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA 36 (287)
T PF00931_consen 5 IEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLA 36 (287)
T ss_dssp HHHHHHHHHTTTTSSEEEEEEESTTSSHHHHH
T ss_pred HHHHHHHhhCCCCCeEEEEEEcCCcCCcceee
Confidence 4456666666 67788999999999999753
No 289
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=40.64 E-value=21 Score=36.66 Aligned_cols=32 Identities=22% Similarity=0.330 Sum_probs=24.3
Q ss_pred cchHHHHHHhcCC---cEEEEEEcccCCCceEEec
Q psy7618 102 SVRPMVNHMLHGY---NVTIFAYGQTGTGKTFTME 133 (560)
Q Consensus 102 ~~~plv~~~l~G~---N~~i~aYG~TgSGKTyTm~ 133 (560)
+..+-++.++.|- ...+..||++|||||..++
T Consensus 79 Tg~~~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~ 113 (310)
T TIGR02236 79 TGSKELDELLGGGIETQAITEVFGEFGSGKTQICH 113 (310)
T ss_pred CCCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHH
Confidence 3556678888753 5667899999999997643
No 290
>PRK08233 hypothetical protein; Provisional
Probab=40.64 E-value=11 Score=34.85 Aligned_cols=16 Identities=31% Similarity=0.260 Sum_probs=12.6
Q ss_pred EEEEEcccCCCceEEe
Q psy7618 117 TIFAYGQTGTGKTFTM 132 (560)
Q Consensus 117 ~i~aYG~TgSGKTyTm 132 (560)
.|.--|++|||||+..
T Consensus 5 iI~I~G~~GsGKtTla 20 (182)
T PRK08233 5 IITIAAVSGGGKTTLT 20 (182)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3556799999999764
No 291
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=40.59 E-value=9.1 Score=37.63 Aligned_cols=15 Identities=27% Similarity=0.567 Sum_probs=12.8
Q ss_pred EEEEcccCCCceEEe
Q psy7618 118 IFAYGQTGTGKTFTM 132 (560)
Q Consensus 118 i~aYG~TgSGKTyTm 132 (560)
+.-.|++|||||.-|
T Consensus 34 vaI~GpSGSGKSTLL 48 (226)
T COG1136 34 VAIVGPSGSGKSTLL 48 (226)
T ss_pred EEEECCCCCCHHHHH
Confidence 567899999999765
No 292
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=40.41 E-value=19 Score=35.96 Aligned_cols=24 Identities=33% Similarity=0.625 Sum_probs=18.7
Q ss_pred HHHHhcC---CcEEEEEEcccCCCceE
Q psy7618 107 VNHMLHG---YNVTIFAYGQTGTGKTF 130 (560)
Q Consensus 107 v~~~l~G---~N~~i~aYG~TgSGKTy 130 (560)
++.++.| ....++.||.+|||||.
T Consensus 12 lD~~l~GG~p~g~~~lI~G~pGsGKT~ 38 (260)
T COG0467 12 LDEILGGGLPRGSVVLITGPPGTGKTI 38 (260)
T ss_pred hHHHhcCCCcCCcEEEEEcCCCCcHHH
Confidence 5556654 56778999999999974
No 293
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=40.19 E-value=15 Score=41.86 Aligned_cols=17 Identities=18% Similarity=0.274 Sum_probs=15.1
Q ss_pred EEEEEEcccCCCceEEe
Q psy7618 116 VTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyTm 132 (560)
.-++++|+||||||.++
T Consensus 212 ~H~lv~ApTgsGKgvg~ 228 (623)
T TIGR02767 212 THMIFFAGSGGFKTTSV 228 (623)
T ss_pred ceEEEEeCCCCCcccee
Confidence 46899999999999976
No 294
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=40.15 E-value=14 Score=37.97 Aligned_cols=15 Identities=33% Similarity=0.685 Sum_probs=13.1
Q ss_pred EEEEEcccCCCceEE
Q psy7618 117 TIFAYGQTGTGKTFT 131 (560)
Q Consensus 117 ~i~aYG~TgSGKTyT 131 (560)
.|+-.|+||||||-.
T Consensus 6 ii~I~GpTasGKS~L 20 (300)
T PRK14729 6 IVFIFGPTAVGKSNI 20 (300)
T ss_pred EEEEECCCccCHHHH
Confidence 688999999999863
No 295
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=40.02 E-value=17 Score=41.99 Aligned_cols=35 Identities=26% Similarity=0.426 Sum_probs=25.8
Q ss_pred hhhhccchHHHHHHh-cCCcEEEEEEcccCCCceEEe
Q psy7618 97 EIYENSVRPMVNHML-HGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 97 ~vf~~~~~plv~~~l-~G~N~~i~aYG~TgSGKTyTm 132 (560)
.||.- +......++ .|.|-||+.-|.+|||||.|.
T Consensus 68 Hifai-A~~Ay~~m~~~~~~QsIiiSGESGaGKTes~ 103 (691)
T cd01380 68 HIFAI-AEEAYKQMTRDEKNQSIIVSGESGAGKTVSA 103 (691)
T ss_pred CHHHH-HHHHHHHHHhcCCCceEEEEcCCCCCchHHH
Confidence 45643 333333444 799999999999999999986
No 296
>CHL00195 ycf46 Ycf46; Provisional
Probab=40.01 E-value=11 Score=41.69 Aligned_cols=17 Identities=35% Similarity=0.556 Sum_probs=14.7
Q ss_pred EEEEEEcccCCCceEEe
Q psy7618 116 VTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyTm 132 (560)
-.|+-||+.|+|||++.
T Consensus 260 kGILL~GPpGTGKTllA 276 (489)
T CHL00195 260 RGLLLVGIQGTGKSLTA 276 (489)
T ss_pred ceEEEECCCCCcHHHHH
Confidence 56999999999999764
No 297
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=39.92 E-value=10 Score=40.84 Aligned_cols=19 Identities=37% Similarity=0.347 Sum_probs=16.5
Q ss_pred cEEEEEEcccCCCceEEec
Q psy7618 115 NVTIFAYGQTGTGKTFTME 133 (560)
Q Consensus 115 N~~i~aYG~TgSGKTyTm~ 133 (560)
...|...|++|+|||.|+-
T Consensus 191 g~vi~lvGpnG~GKTTtla 209 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTA 209 (420)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4578899999999999984
No 298
>PRK06762 hypothetical protein; Provisional
Probab=39.91 E-value=13 Score=34.15 Aligned_cols=14 Identities=43% Similarity=0.669 Sum_probs=12.0
Q ss_pred EEEEEcccCCCceE
Q psy7618 117 TIFAYGQTGTGKTF 130 (560)
Q Consensus 117 ~i~aYG~TgSGKTy 130 (560)
.|...|.+|||||+
T Consensus 4 li~i~G~~GsGKST 17 (166)
T PRK06762 4 LIIIRGNSGSGKTT 17 (166)
T ss_pred EEEEECCCCCCHHH
Confidence 56778999999986
No 299
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=39.83 E-value=12 Score=35.58 Aligned_cols=14 Identities=43% Similarity=0.491 Sum_probs=12.1
Q ss_pred EEEEcccCCCceEE
Q psy7618 118 IFAYGQTGTGKTFT 131 (560)
Q Consensus 118 i~aYG~TgSGKTyT 131 (560)
|.-.|++|||||+.
T Consensus 2 IgI~G~sgSGKTTl 15 (194)
T PF00485_consen 2 IGIAGPSGSGKTTL 15 (194)
T ss_dssp EEEEESTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 56789999999976
No 300
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=39.72 E-value=21 Score=40.40 Aligned_cols=25 Identities=32% Similarity=0.624 Sum_probs=19.2
Q ss_pred HHHHHhcCCcEEEEEEcccCCCceEEe
Q psy7618 106 MVNHMLHGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 106 lv~~~l~G~N~~i~aYG~TgSGKTyTm 132 (560)
++..+++|.|+ ++..+||+|||.+.
T Consensus 21 ~i~~il~g~dv--lv~~PTG~GKTl~y 45 (591)
T TIGR01389 21 IISHVLDGRDV--LVVMPTGGGKSLCY 45 (591)
T ss_pred HHHHHHcCCCE--EEEcCCCccHhHHH
Confidence 44566789875 56679999999874
No 301
>PRK14532 adenylate kinase; Provisional
Probab=39.65 E-value=13 Score=34.92 Aligned_cols=15 Identities=20% Similarity=0.496 Sum_probs=12.9
Q ss_pred EEEEEcccCCCceEE
Q psy7618 117 TIFAYGQTGTGKTFT 131 (560)
Q Consensus 117 ~i~aYG~TgSGKTyT 131 (560)
.|+..|+.|||||+.
T Consensus 2 ~i~~~G~pGsGKsT~ 16 (188)
T PRK14532 2 NLILFGPPAAGKGTQ 16 (188)
T ss_pred EEEEECCCCCCHHHH
Confidence 478899999999865
No 302
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=39.60 E-value=15 Score=31.31 Aligned_cols=15 Identities=40% Similarity=0.678 Sum_probs=12.8
Q ss_pred EEEEcccCCCceEEe
Q psy7618 118 IFAYGQTGTGKTFTM 132 (560)
Q Consensus 118 i~aYG~TgSGKTyTm 132 (560)
|+..|..|+|||..+
T Consensus 2 I~V~G~~g~GKTsLi 16 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLI 16 (119)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECcCCCCHHHHH
Confidence 678999999999754
No 303
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=39.48 E-value=10 Score=41.98 Aligned_cols=16 Identities=38% Similarity=0.754 Sum_probs=13.5
Q ss_pred EEEEEcccCCCceEEe
Q psy7618 117 TIFAYGQTGTGKTFTM 132 (560)
Q Consensus 117 ~i~aYG~TgSGKTyTm 132 (560)
.|+-||++|+|||++.
T Consensus 218 GILLyGPPGTGKT~LA 233 (512)
T TIGR03689 218 GVLLYGPPGCGKTLIA 233 (512)
T ss_pred ceEEECCCCCcHHHHH
Confidence 4888999999999753
No 304
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=39.41 E-value=14 Score=40.38 Aligned_cols=28 Identities=25% Similarity=0.538 Sum_probs=20.7
Q ss_pred HHHHhcCCc------EEEEEEcccCCCceEEecc
Q psy7618 107 VNHMLHGYN------VTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 107 v~~~l~G~N------~~i~aYG~TgSGKTyTm~G 134 (560)
+..+++|.+ -.|+-.|++|||||+.|-+
T Consensus 18 l~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr~ 51 (504)
T TIGR03238 18 LERILVKFNKELPSSSLLFLCGSSGDGKSEILAE 51 (504)
T ss_pred HHHHHhCCceeecCCCEEEEECCCCCCHHHHHhc
Confidence 445666643 4478899999999998763
No 305
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=39.27 E-value=11 Score=43.50 Aligned_cols=18 Identities=39% Similarity=0.416 Sum_probs=15.9
Q ss_pred EEEEEEcccCCCceEEec
Q psy7618 116 VTIFAYGQTGTGKTFTME 133 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyTm~ 133 (560)
.+|.-.|+||+|||+|+.
T Consensus 186 ~Vi~lVGpnGvGKTTTia 203 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTA 203 (767)
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 578899999999999974
No 306
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=39.15 E-value=9.9 Score=36.13 Aligned_cols=15 Identities=40% Similarity=0.454 Sum_probs=12.5
Q ss_pred EEEEcccCCCceEEe
Q psy7618 118 IFAYGQTGTGKTFTM 132 (560)
Q Consensus 118 i~aYG~TgSGKTyTm 132 (560)
|.--|++|||||+++
T Consensus 2 igi~G~~GsGKSTl~ 16 (198)
T cd02023 2 IGIAGGSGSGKTTVA 16 (198)
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999999875
No 307
>PRK04040 adenylate kinase; Provisional
Probab=39.07 E-value=12 Score=35.50 Aligned_cols=16 Identities=31% Similarity=0.544 Sum_probs=13.8
Q ss_pred EEEEEcccCCCceEEe
Q psy7618 117 TIFAYGQTGTGKTFTM 132 (560)
Q Consensus 117 ~i~aYG~TgSGKTyTm 132 (560)
.|+.+|.+|||||+..
T Consensus 4 ~i~v~G~pG~GKtt~~ 19 (188)
T PRK04040 4 VVVVTGVPGVGKTTVL 19 (188)
T ss_pred EEEEEeCCCCCHHHHH
Confidence 5788999999999864
No 308
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=38.80 E-value=18 Score=42.08 Aligned_cols=18 Identities=33% Similarity=0.331 Sum_probs=15.7
Q ss_pred cEEEEEEcccCCCceEEe
Q psy7618 115 NVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 115 N~~i~aYG~TgSGKTyTm 132 (560)
.+.++-+|+||+|||++.
T Consensus 488 ~~~~Lf~GP~GvGKT~lA 505 (758)
T PRK11034 488 VGSFLFAGPTGVGKTEVT 505 (758)
T ss_pred cceEEEECCCCCCHHHHH
Confidence 367999999999999875
No 309
>KOG2391|consensus
Probab=38.76 E-value=98 Score=32.12 Aligned_cols=56 Identities=16% Similarity=0.240 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH-----------HHHHHHHhhhcccCCCCCC
Q psy7618 505 MREKYKKALEDLAQCKMDYEMAEKRADTLKNMAIKQM-----------KDVAELLVDIGKVNQPNPD 560 (560)
Q Consensus 505 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~ 560 (560)
+++++.++++.+++-...+....+..+..++..-+|+ .+++|.|++.+......+|
T Consensus 226 eme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~n~~~~~~D 292 (365)
T KOG2391|consen 226 EMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAENLEALDID 292 (365)
T ss_pred HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccCcCCCch
Confidence 5555666665555544444444444444444443333 3444566666665555554
No 310
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=38.56 E-value=14 Score=34.44 Aligned_cols=16 Identities=38% Similarity=0.582 Sum_probs=13.5
Q ss_pred EEEEEcccCCCceEEe
Q psy7618 117 TIFAYGQTGTGKTFTM 132 (560)
Q Consensus 117 ~i~aYG~TgSGKTyTm 132 (560)
.|+..|+.|||||+..
T Consensus 5 ii~i~G~~GsGKsTl~ 20 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQC 20 (188)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999864
No 311
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=38.45 E-value=27 Score=36.88 Aligned_cols=46 Identities=26% Similarity=0.511 Sum_probs=27.9
Q ss_pred eeee-CC-ccccCCCcchhhhhccchHHHHHHhcC---CcEEEEEEcccCCCceEE
Q psy7618 81 RRFT-FD-AVYGMQATQTEIYENSVRPMVNHMLHG---YNVTIFAYGQTGTGKTFT 131 (560)
Q Consensus 81 ~~F~-FD-~VF~~~a~Q~~vf~~~~~plv~~~l~G---~N~~i~aYG~TgSGKTyT 131 (560)
+.|. |+ .||+ +++.-+.++. .+.....| .+-.+.-.|++|||||..
T Consensus 44 ~~y~~F~~~~~G----~~~~i~~lv~-~l~~~a~g~~~~r~il~L~GPPGsGKStl 94 (361)
T smart00763 44 KRYRFFDHDFFG----MEEAIERFVN-YFKSAAQGLEERKQILYLLGPVGGGKSSL 94 (361)
T ss_pred eeccccchhccC----cHHHHHHHHH-HHHHHHhcCCCCCcEEEEECCCCCCHHHH
Confidence 3454 34 5666 4444444443 33333343 567789999999999853
No 312
>KOG2228|consensus
Probab=38.44 E-value=23 Score=36.87 Aligned_cols=41 Identities=29% Similarity=0.590 Sum_probs=30.3
Q ss_pred ccCCCcchhhhhccchHHHHHHhcCCcEEEEEEcccCCCceEEec
Q psy7618 89 YGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTME 133 (560)
Q Consensus 89 F~~~a~Q~~vf~~~~~plv~~~l~G~N~~i~aYG~TgSGKTyTm~ 133 (560)
|+-...|..+++- +=+.++.|..-.++-.|+.|||||+-+-
T Consensus 27 ~g~~~~~~~l~~~----lkqt~~~gEsnsviiigprgsgkT~li~ 67 (408)
T KOG2228|consen 27 FGVQDEQKHLSEL----LKQTILHGESNSVIIIGPRGSGKTILID 67 (408)
T ss_pred eehHHHHHHHHHH----HHHHHHhcCCCceEEEccCCCCceEeeH
Confidence 3444556666654 2246678998899999999999999863
No 313
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=38.37 E-value=15 Score=32.50 Aligned_cols=14 Identities=36% Similarity=0.532 Sum_probs=12.2
Q ss_pred EEEEcccCCCceEE
Q psy7618 118 IFAYGQTGTGKTFT 131 (560)
Q Consensus 118 i~aYG~TgSGKTyT 131 (560)
|+..|++|||||..
T Consensus 2 I~i~G~~GsGKst~ 15 (147)
T cd02020 2 IAIDGPAGSGKSTV 15 (147)
T ss_pred EEEECCCCCCHHHH
Confidence 67899999999875
No 314
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.07 E-value=19 Score=39.47 Aligned_cols=41 Identities=29% Similarity=0.395 Sum_probs=25.2
Q ss_pred eCCccccCCCcchhhhhccchHHHHHHhcCCc-EEEEEEcccCCCceEEe
Q psy7618 84 TFDAVYGMQATQTEIYENSVRPMVNHMLHGYN-VTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 84 ~FD~VF~~~a~Q~~vf~~~~~plv~~~l~G~N-~~i~aYG~TgSGKTyTm 132 (560)
+||.|.+ |+.+ +..+-..+-.|.- ..++-||+.|+|||++.
T Consensus 12 ~~~divG----q~~i----~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA 53 (472)
T PRK14962 12 TFSEVVG----QDHV----KKLIINALKKNSISHAYIFAGPRGTGKTTVA 53 (472)
T ss_pred CHHHccC----cHHH----HHHHHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 4566654 4444 2333333334533 45899999999999875
No 315
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=37.96 E-value=14 Score=39.90 Aligned_cols=18 Identities=39% Similarity=0.624 Sum_probs=15.0
Q ss_pred cEEEEEEcccCCCceEEe
Q psy7618 115 NVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 115 N~~i~aYG~TgSGKTyTm 132 (560)
...|+-+|+||+|||+..
T Consensus 108 ~~~iLl~Gp~GtGKT~lA 125 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLA 125 (412)
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 366999999999999653
No 316
>KOG0726|consensus
Probab=37.83 E-value=23 Score=36.19 Aligned_cols=42 Identities=29% Similarity=0.487 Sum_probs=30.3
Q ss_pred EEEEEcccCCCceEEec--------------cCC---CCcChHHHHHHHHHHHHhhhcc
Q psy7618 117 TIFAYGQTGTGKTFTME--------------GSQ---MERGIMQNAFRQIFDFKQKEKR 158 (560)
Q Consensus 117 ~i~aYG~TgSGKTyTm~--------------G~~---~~~Giipr~l~~lF~~~~~~~~ 158 (560)
.|+-||..|+|||-.-- |+. ..-|==|+.+++||+....+..
T Consensus 221 GVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylGdGpklvRqlF~vA~e~ap 279 (440)
T KOG0726|consen 221 GVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAP 279 (440)
T ss_pred eeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhccchHHHHHHHHHHHhcCC
Confidence 48899999999985321 221 1345669999999998877654
No 317
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=37.73 E-value=23 Score=34.44 Aligned_cols=31 Identities=26% Similarity=0.330 Sum_probs=22.9
Q ss_pred chHHHHHHhc-CC--cEEEEEEcccCCCceEEec
Q psy7618 103 VRPMVNHMLH-GY--NVTIFAYGQTGTGKTFTME 133 (560)
Q Consensus 103 ~~plv~~~l~-G~--N~~i~aYG~TgSGKTyTm~ 133 (560)
+-+-+|.++. |+ ..+++.+|++|+|||+...
T Consensus 5 Gi~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~ 38 (229)
T TIGR03881 5 GVEGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCL 38 (229)
T ss_pred ChhhHHHhhcCCCcCCeEEEEECCCCCChHHHHH
Confidence 3455777774 43 5778899999999998643
No 318
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=37.64 E-value=17 Score=38.32 Aligned_cols=41 Identities=24% Similarity=0.317 Sum_probs=25.2
Q ss_pred eCCccccCCCcchhhhhccchHHHHHHhcC-CcEEEEEEcccCCCceEEe
Q psy7618 84 TFDAVYGMQATQTEIYENSVRPMVNHMLHG-YNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 84 ~FD~VF~~~a~Q~~vf~~~~~plv~~~l~G-~N~~i~aYG~TgSGKTyTm 132 (560)
+||.|. .|+.+-+. +...+-.| ..-.++-||+.|+|||++.
T Consensus 14 ~~~~ii----Gq~~~~~~----l~~~~~~~~~~h~~L~~Gp~G~GKTtla 55 (363)
T PRK14961 14 YFRDII----GQKHIVTA----ISNGLSLGRIHHAWLLSGTRGVGKTTIA 55 (363)
T ss_pred chhhcc----ChHHHHHH----HHHHHHcCCCCeEEEEecCCCCCHHHHH
Confidence 455554 44544432 33333344 3456899999999999765
No 319
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=37.55 E-value=8.1 Score=37.79 Aligned_cols=13 Identities=31% Similarity=0.391 Sum_probs=11.1
Q ss_pred EEcccCCCceEEe
Q psy7618 120 AYGQTGTGKTFTM 132 (560)
Q Consensus 120 aYG~TgSGKTyTm 132 (560)
--|++|||||+++
T Consensus 4 I~G~sGSGKTTla 16 (220)
T cd02025 4 IAGSVAVGKSTTA 16 (220)
T ss_pred eeCCCCCCHHHHH
Confidence 3499999999986
No 320
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=37.26 E-value=14 Score=33.86 Aligned_cols=16 Identities=38% Similarity=0.470 Sum_probs=13.2
Q ss_pred EEEEEcccCCCceEEe
Q psy7618 117 TIFAYGQTGTGKTFTM 132 (560)
Q Consensus 117 ~i~aYG~TgSGKTyTm 132 (560)
.|.-+|++|||||+..
T Consensus 2 iI~i~G~~GSGKstia 17 (171)
T TIGR02173 2 IITISGPPGSGKTTVA 17 (171)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999998653
No 321
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=37.13 E-value=12 Score=40.31 Aligned_cols=19 Identities=37% Similarity=0.639 Sum_probs=15.6
Q ss_pred cEEEEEEcccCCCceEEec
Q psy7618 115 NVTIFAYGQTGTGKTFTME 133 (560)
Q Consensus 115 N~~i~aYG~TgSGKTyTm~ 133 (560)
...++..|++|+|||+|..
T Consensus 223 ~~vi~lvGptGvGKTTtaa 241 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIA 241 (432)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3567788999999999864
No 322
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=37.00 E-value=29 Score=35.97 Aligned_cols=31 Identities=19% Similarity=0.196 Sum_probs=24.6
Q ss_pred cchHHHHHHhcC---CcEEEEEEcccCCCceEEe
Q psy7618 102 SVRPMVNHMLHG---YNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 102 ~~~plv~~~l~G---~N~~i~aYG~TgSGKTyTm 132 (560)
++.+-+|.+|.| ....+.-||++|||||.-.
T Consensus 80 TG~~~LD~lLgGGi~~G~iteI~G~~GsGKTql~ 113 (313)
T TIGR02238 80 TGSQALDGILGGGIESMSITEVFGEFRCGKTQLS 113 (313)
T ss_pred CCCHHHHHHhCCCCcCCeEEEEECCCCCCcCHHH
Confidence 467788999986 3456779999999999754
No 323
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=36.98 E-value=27 Score=36.35 Aligned_cols=32 Identities=28% Similarity=0.342 Sum_probs=25.3
Q ss_pred ccchHHHHHHhc--CC--cEEEEEEcccCCCceEEe
Q psy7618 101 NSVRPMVNHMLH--GY--NVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 101 ~~~~plv~~~l~--G~--N~~i~aYG~TgSGKTyTm 132 (560)
.++.+-+|.+|. |+ ...+..||++|||||...
T Consensus 37 sTGi~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLa 72 (325)
T cd00983 37 PTGSLSLDIALGIGGYPKGRIIEIYGPESSGKTTLA 72 (325)
T ss_pred cCCCHHHHHHhcCCCccCCeEEEEECCCCCCHHHHH
Confidence 457888999987 43 457889999999999653
No 324
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=36.52 E-value=18 Score=35.26 Aligned_cols=16 Identities=44% Similarity=0.530 Sum_probs=12.1
Q ss_pred EEEEEcccCCCceEEe
Q psy7618 117 TIFAYGQTGTGKTFTM 132 (560)
Q Consensus 117 ~i~aYG~TgSGKTyTm 132 (560)
.++-+|+||||||..-
T Consensus 3 v~~i~GpT~tGKt~~a 18 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALA 18 (233)
T ss_dssp EEEEE-STTSSHHHHH
T ss_pred EEEEECCCCCChhHHH
Confidence 3577999999999763
No 325
>PRK06851 hypothetical protein; Provisional
Probab=36.46 E-value=16 Score=38.63 Aligned_cols=28 Identities=29% Similarity=0.498 Sum_probs=23.0
Q ss_pred HHHHHhcCCcEEEEEEcccCCCceEEec
Q psy7618 106 MVNHMLHGYNVTIFAYGQTGTGKTFTME 133 (560)
Q Consensus 106 lv~~~l~G~N~~i~aYG~TgSGKTyTm~ 133 (560)
+.+.++.|.+-.++--|.+|+|||++|-
T Consensus 21 ~~~~~~~~~~~~~il~G~pGtGKStl~~ 48 (367)
T PRK06851 21 LYDSIIDGANRIFILKGGPGTGKSTLMK 48 (367)
T ss_pred hhhhhccccceEEEEECCCCCCHHHHHH
Confidence 4455667788889999999999999874
No 326
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=36.46 E-value=19 Score=41.21 Aligned_cols=35 Identities=20% Similarity=0.338 Sum_probs=25.3
Q ss_pred hhhhccchHHHHHHh-cCCcEEEEEEcccCCCceEEe
Q psy7618 97 EIYENSVRPMVNHML-HGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 97 ~vf~~~~~plv~~~l-~G~N~~i~aYG~TgSGKTyTm 132 (560)
.+|.- +......++ .+.|-||+.-|.+|||||.|+
T Consensus 68 Hifav-A~~Ay~~m~~~~~~QsIiisGESGsGKTet~ 103 (653)
T cd01379 68 HIFAI-ADAAYQSLVTYNQDQCIVISGESGSGKTESA 103 (653)
T ss_pred cHHHH-HHHHHHHHHhcCCCceEEEecCCCCCchHHH
Confidence 46643 333333333 589999999999999999987
No 327
>PRK03839 putative kinase; Provisional
Probab=36.42 E-value=14 Score=34.41 Aligned_cols=14 Identities=43% Similarity=0.534 Sum_probs=12.1
Q ss_pred EEEEcccCCCceEE
Q psy7618 118 IFAYGQTGTGKTFT 131 (560)
Q Consensus 118 i~aYG~TgSGKTyT 131 (560)
|+-.|..|||||+.
T Consensus 3 I~l~G~pGsGKsT~ 16 (180)
T PRK03839 3 IAITGTPGVGKTTV 16 (180)
T ss_pred EEEECCCCCCHHHH
Confidence 77889999999874
No 328
>KOG1514|consensus
Probab=36.40 E-value=20 Score=40.78 Aligned_cols=32 Identities=25% Similarity=0.492 Sum_probs=24.5
Q ss_pred chHHHHHHh--cCCcEEEEEEcccCCCceEEecc
Q psy7618 103 VRPMVNHML--HGYNVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 103 ~~plv~~~l--~G~N~~i~aYG~TgSGKTyTm~G 134 (560)
+...++.++ +|--+|+..-|..|||||.|+.+
T Consensus 408 I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~ 441 (767)
T KOG1514|consen 408 IEDFLRSFISDQGLGSCMYISGVPGTGKTATVLE 441 (767)
T ss_pred HHHHHHhhcCCCCCceeEEEecCCCCCceehHHH
Confidence 344455555 47777999999999999999765
No 329
>PRK04296 thymidine kinase; Provisional
Probab=36.37 E-value=15 Score=34.88 Aligned_cols=18 Identities=28% Similarity=0.477 Sum_probs=15.5
Q ss_pred EEEEEcccCCCceEEecc
Q psy7618 117 TIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 117 ~i~aYG~TgSGKTyTm~G 134 (560)
.++-+|+.|+|||..+++
T Consensus 4 i~litG~~GsGKTT~~l~ 21 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQ 21 (190)
T ss_pred EEEEECCCCCHHHHHHHH
Confidence 567899999999987766
No 330
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=36.36 E-value=19 Score=36.88 Aligned_cols=20 Identities=30% Similarity=0.400 Sum_probs=17.6
Q ss_pred CCcEEEEEEcccCCCceEEe
Q psy7618 113 GYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 113 G~N~~i~aYG~TgSGKTyTm 132 (560)
.-+.+|.-||+=|||||+-|
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l 37 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFL 37 (325)
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 56788999999999999865
No 331
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=36.15 E-value=13 Score=39.01 Aligned_cols=31 Identities=16% Similarity=0.279 Sum_probs=23.9
Q ss_pred chHHHHHHhcCCcEEEEEEcccCCCceEEec
Q psy7618 103 VRPMVNHMLHGYNVTIFAYGQTGTGKTFTME 133 (560)
Q Consensus 103 ~~plv~~~l~G~N~~i~aYG~TgSGKTyTm~ 133 (560)
..-++-.+++..-+-++-.|.+|+|||..+-
T Consensus 13 ~~al~~~~~~~~~g~vli~G~~G~gKttl~r 43 (337)
T TIGR02030 13 KLALLLNVIDPKIGGVMVMGDRGTGKSTAVR 43 (337)
T ss_pred HHHHHHHhcCCCCCeEEEEcCCCCCHHHHHH
Confidence 3446667777666778999999999997753
No 332
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=35.99 E-value=20 Score=39.00 Aligned_cols=35 Identities=23% Similarity=0.338 Sum_probs=21.2
Q ss_pred HHHHHHhcCCcEEEEEEcccCCCceEEeccCCCCcChHH
Q psy7618 105 PMVNHMLHGYNVTIFAYGQTGTGKTFTMEGSQMERGIMQ 143 (560)
Q Consensus 105 plv~~~l~G~N~~i~aYG~TgSGKTyTm~G~~~~~Giip 143 (560)
..++=+..|... +|.||+.|||||....= -+||+|
T Consensus 189 rAleiAAAGgHn-Ll~~GpPGtGKTmla~R---l~~lLP 223 (490)
T COG0606 189 RALEIAAAGGHN-LLLVGPPGTGKTMLASR---LPGLLP 223 (490)
T ss_pred HHHHHHHhcCCc-EEEecCCCCchHHhhhh---hcccCC
Confidence 333333344443 68899999999876432 345654
No 333
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=35.88 E-value=26 Score=40.29 Aligned_cols=21 Identities=19% Similarity=0.234 Sum_probs=17.7
Q ss_pred cCCcEEEEEEcccCCCceEEe
Q psy7618 112 HGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 112 ~G~N~~i~aYG~TgSGKTyTm 132 (560)
.+.+.-++++|+||||||..+
T Consensus 136 ~~~~~hvlviApTgSGKgvg~ 156 (670)
T PRK13850 136 NGEQPHSLVVAPTRAGKGVGV 156 (670)
T ss_pred cCCCceEEEEecCCCCceeee
Confidence 345667899999999999987
No 334
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=35.80 E-value=29 Score=35.88 Aligned_cols=32 Identities=25% Similarity=0.343 Sum_probs=24.3
Q ss_pred cchHHHHHHhcC---CcEEEEEEcccCCCceEEec
Q psy7618 102 SVRPMVNHMLHG---YNVTIFAYGQTGTGKTFTME 133 (560)
Q Consensus 102 ~~~plv~~~l~G---~N~~i~aYG~TgSGKTyTm~ 133 (560)
+..+-++.++.| ....+.-||++|||||...+
T Consensus 86 Tg~~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~ 120 (317)
T PRK04301 86 TGSKELDELLGGGIETQSITEFYGEFGSGKTQICH 120 (317)
T ss_pred CCCHHHHHHhcCCccCCcEEEEECCCCCCHhHHHH
Confidence 355667788875 26678899999999997643
No 335
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=35.70 E-value=18 Score=42.95 Aligned_cols=14 Identities=43% Similarity=0.567 Sum_probs=11.9
Q ss_pred EcccCCCceEEecc
Q psy7618 121 YGQTGTGKTFTMEG 134 (560)
Q Consensus 121 YG~TgSGKTyTm~G 134 (560)
-=+|||||||||.+
T Consensus 65 ~M~TGtGKT~~~~~ 78 (986)
T PRK15483 65 KMETGTGKTYVYTR 78 (986)
T ss_pred EeCCCCCHHHHHHH
Confidence 34799999999877
No 336
>KOG1532|consensus
Probab=35.70 E-value=27 Score=35.41 Aligned_cols=37 Identities=27% Similarity=0.386 Sum_probs=24.9
Q ss_pred CcEEEEEEcccCCCceEEeccCCCCcChHHHHHHHHHHHHhhhccCcEEEE
Q psy7618 114 YNVTIFAYGQTGTGKTFTMEGSQMERGIMQNAFRQIFDFKQKEKRHKCIVE 164 (560)
Q Consensus 114 ~N~~i~aYG~TgSGKTyTm~G~~~~~Giipr~l~~lF~~~~~~~~~~~~v~ 164 (560)
.-+||++.|..|||||.-| +|...+|+ ......|.+.
T Consensus 18 ~p~~ilVvGMAGSGKTTF~----------QrL~~hl~----~~~~ppYviN 54 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFM----------QRLNSHLH----AKKTPPYVIN 54 (366)
T ss_pred CCcEEEEEecCCCCchhHH----------HHHHHHHh----hccCCCeEEe
Confidence 3579999999999999643 45555544 4444456655
No 337
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=35.69 E-value=16 Score=37.91 Aligned_cols=24 Identities=50% Similarity=0.753 Sum_probs=21.2
Q ss_pred cccccccceeeEeecchhhccccc
Q psy7618 285 RHKCIVECCYLELYQGKIRDLLNV 308 (560)
Q Consensus 285 ~~~~~v~~s~lei~~~~~~dll~~ 308 (560)
...+.|++||+|||++.++|||+.
T Consensus 124 ~~~~~v~~S~~ei~~e~v~DLL~~ 147 (335)
T smart00129 124 GWQFQVKVSYLEIYNEKIRDLLNP 147 (335)
T ss_pred CceEEEEEEEEEEECCEEEECcCC
Confidence 356889999999999999999974
No 338
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=35.66 E-value=14 Score=35.72 Aligned_cols=15 Identities=40% Similarity=0.678 Sum_probs=13.3
Q ss_pred EEEEEcccCCCceEE
Q psy7618 117 TIFAYGQTGTGKTFT 131 (560)
Q Consensus 117 ~i~aYG~TgSGKTyT 131 (560)
.|+..|.||||||.+
T Consensus 2 ~IlllG~tGsGKSs~ 16 (212)
T PF04548_consen 2 RILLLGKTGSGKSSL 16 (212)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 588999999999965
No 339
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=35.64 E-value=15 Score=32.67 Aligned_cols=20 Identities=25% Similarity=0.469 Sum_probs=15.9
Q ss_pred cCCcEEEEEEcccCCCceEE
Q psy7618 112 HGYNVTIFAYGQTGTGKTFT 131 (560)
Q Consensus 112 ~G~N~~i~aYG~TgSGKTyT 131 (560)
...+.-|+-+|..||||++.
T Consensus 18 a~~~~pvli~GE~GtGK~~~ 37 (138)
T PF14532_consen 18 AKSSSPVLITGEPGTGKSLL 37 (138)
T ss_dssp HCSSS-EEEECCTTSSHHHH
T ss_pred hCCCCcEEEEcCCCCCHHHH
Confidence 36677788999999999875
No 340
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=35.54 E-value=12 Score=32.68 Aligned_cols=16 Identities=25% Similarity=0.436 Sum_probs=13.4
Q ss_pred EEEEEcccCCCceEEe
Q psy7618 117 TIFAYGQTGTGKTFTM 132 (560)
Q Consensus 117 ~i~aYG~TgSGKTyTm 132 (560)
-|..+|.+|||||..+
T Consensus 3 ki~~~G~~~~GKstl~ 18 (161)
T TIGR00231 3 KIVIVGDPNVGKSTLL 18 (161)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999854
No 341
>KOG0651|consensus
Probab=35.38 E-value=11 Score=38.89 Aligned_cols=80 Identities=26% Similarity=0.400 Sum_probs=52.3
Q ss_pred CceeeeCCccccCCCcchhhhhccchHHHHHHhc---CCc--EEEEEEcccCCCceEEe------ccC-----------C
Q psy7618 79 KARRFTFDAVYGMQATQTEIYENSVRPMVNHMLH---GYN--VTIFAYGQTGTGKTFTM------EGS-----------Q 136 (560)
Q Consensus 79 ~~~~F~FD~VF~~~a~Q~~vf~~~~~plv~~~l~---G~N--~~i~aYG~TgSGKTyTm------~G~-----------~ 136 (560)
....++||.|=+-.-.-.++-+.+..|++...+- |.. --++-||+.|+|||+-- +|- .
T Consensus 125 ~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~ 204 (388)
T KOG0651|consen 125 DPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVD 204 (388)
T ss_pred CccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhh
Confidence 4566889988654443445555667788765552 333 34788999999999743 221 1
Q ss_pred CCcChHHHHHHHHHHHHhhhcc
Q psy7618 137 MERGIMQNAFRQIFDFKQKEKR 158 (560)
Q Consensus 137 ~~~Giipr~l~~lF~~~~~~~~ 158 (560)
...|=-.|.+++.|....+..+
T Consensus 205 kyiGEsaRlIRemf~yA~~~~p 226 (388)
T KOG0651|consen 205 KYIGESARLIRDMFRYAREVIP 226 (388)
T ss_pred hhcccHHHHHHHHHHHHhhhCc
Confidence 1456678888999988776544
No 342
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=35.36 E-value=18 Score=37.40 Aligned_cols=25 Identities=36% Similarity=0.594 Sum_probs=21.7
Q ss_pred cccccccceeeEeecchhhcccccC
Q psy7618 285 RHKCIVECCYLELYQGKIRDLLNVS 309 (560)
Q Consensus 285 ~~~~~v~~s~lei~~~~~~dll~~~ 309 (560)
...+.|.+||+|||++.++|||...
T Consensus 124 ~~~~~v~~S~~Ei~~e~v~DLL~~~ 148 (328)
T cd00106 124 NKSFSVSVSYLEIYNEKVYDLLSPE 148 (328)
T ss_pred CceEEEEEEEEEEECCEeEECCCCC
Confidence 3568899999999999999999753
No 343
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=35.36 E-value=22 Score=41.30 Aligned_cols=37 Identities=24% Similarity=0.274 Sum_probs=0.0
Q ss_pred cchhhhhccchHHHHHHhcCC------cEEEEEEcccCCCceEE
Q psy7618 94 TQTEIYENSVRPMVNHMLHGY------NVTIFAYGQTGTGKTFT 131 (560)
Q Consensus 94 ~Q~~vf~~~~~plv~~~l~G~------N~~i~aYG~TgSGKTyT 131 (560)
.|++.-+. +...+.....|. .+.++-+|+||+|||++
T Consensus 458 GQ~~ai~~-l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~l 500 (731)
T TIGR02639 458 GQDEAIDS-LVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTEL 500 (731)
T ss_pred CcHHHHHH-HHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHH
No 344
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=35.36 E-value=19 Score=41.13 Aligned_cols=18 Identities=17% Similarity=0.209 Sum_probs=15.5
Q ss_pred cEEEEEEcccCCCceEEe
Q psy7618 115 NVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 115 N~~i~aYG~TgSGKTyTm 132 (560)
+.-++++|+||||||..+
T Consensus 224 ~~H~Lv~ApTgsGKt~g~ 241 (641)
T PRK13822 224 STHGLVFAGSGGFKTTSV 241 (641)
T ss_pred CceEEEEeCCCCCccceE
Confidence 456899999999999976
No 345
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=35.29 E-value=13 Score=34.95 Aligned_cols=16 Identities=31% Similarity=0.613 Sum_probs=13.1
Q ss_pred EEEEEcccCCCceEEe
Q psy7618 117 TIFAYGQTGTGKTFTM 132 (560)
Q Consensus 117 ~i~aYG~TgSGKTyTm 132 (560)
.|+-.|++|||||..+
T Consensus 4 ~i~l~G~sGsGKsTl~ 19 (186)
T PRK10078 4 LIWLMGPSGSGKDSLL 19 (186)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677999999999753
No 346
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=35.22 E-value=20 Score=33.33 Aligned_cols=15 Identities=33% Similarity=0.499 Sum_probs=13.0
Q ss_pred EEEEEcccCCCceEE
Q psy7618 117 TIFAYGQTGTGKTFT 131 (560)
Q Consensus 117 ~i~aYG~TgSGKTyT 131 (560)
.|...|++|||||..
T Consensus 3 ii~l~G~~GsGKsTl 17 (180)
T TIGR03263 3 LIVISGPSGVGKSTL 17 (180)
T ss_pred EEEEECCCCCCHHHH
Confidence 578899999999974
No 347
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=35.21 E-value=18 Score=32.34 Aligned_cols=13 Identities=38% Similarity=0.631 Sum_probs=10.8
Q ss_pred EEEEcccCCCceE
Q psy7618 118 IFAYGQTGTGKTF 130 (560)
Q Consensus 118 i~aYG~TgSGKTy 130 (560)
|.-.|+||||||.
T Consensus 2 i~i~GpsGsGKst 14 (137)
T cd00071 2 IVLSGPSGVGKST 14 (137)
T ss_pred EEEECCCCCCHHH
Confidence 4567999999985
No 348
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=35.20 E-value=30 Score=35.97 Aligned_cols=31 Identities=26% Similarity=0.268 Sum_probs=24.8
Q ss_pred cchHHHHHHhc--CCc--EEEEEEcccCCCceEEe
Q psy7618 102 SVRPMVNHMLH--GYN--VTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 102 ~~~plv~~~l~--G~N--~~i~aYG~TgSGKTyTm 132 (560)
+.-+-+|.+|. |+. ..+.-||++|||||...
T Consensus 38 TGi~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLa 72 (321)
T TIGR02012 38 TGSLSLDLALGVGGLPRGRIIEIYGPESSGKTTLA 72 (321)
T ss_pred CCCHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHH
Confidence 47788899986 543 57889999999999753
No 349
>PRK09354 recA recombinase A; Provisional
Probab=35.15 E-value=30 Score=36.36 Aligned_cols=32 Identities=22% Similarity=0.278 Sum_probs=25.5
Q ss_pred ccchHHHHHHhc-C-C--cEEEEEEcccCCCceEEe
Q psy7618 101 NSVRPMVNHMLH-G-Y--NVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 101 ~~~~plv~~~l~-G-~--N~~i~aYG~TgSGKTyTm 132 (560)
.++.|-+|.+|. | + ...+.-||++|||||...
T Consensus 42 sTGi~~LD~~LG~GGip~G~IteI~G~~GsGKTtLa 77 (349)
T PRK09354 42 STGSLALDIALGIGGLPRGRIVEIYGPESSGKTTLA 77 (349)
T ss_pred cCCcHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHH
Confidence 347888999998 4 2 457889999999999754
No 350
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=35.14 E-value=15 Score=41.04 Aligned_cols=44 Identities=20% Similarity=0.337 Sum_probs=30.0
Q ss_pred eeeCCccccCCCcchhhhhccchHHHHHHhcCCcEEEEEEcccCCCceEE
Q psy7618 82 RFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFT 131 (560)
Q Consensus 82 ~F~FD~VF~~~a~Q~~vf~~~~~plv~~~l~G~N~~i~aYG~TgSGKTyT 131 (560)
.+.|+.+.+.+..-.++.+. +..+ ...+..|+-+|.+||||++.
T Consensus 192 ~~~~~~liG~s~~~~~~~~~-----~~~~-a~~~~pvli~Ge~GtGK~~l 235 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQ-----ARVV-ARSNSTVLLRGESGTGKELI 235 (534)
T ss_pred cCccCceEECCHHHHHHHHH-----HHHH-hCcCCCEEEECCCCccHHHH
Confidence 47788888765544444433 2222 35678899999999999864
No 351
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=35.13 E-value=14 Score=33.54 Aligned_cols=14 Identities=36% Similarity=0.657 Sum_probs=11.7
Q ss_pred EEEEcccCCCceEE
Q psy7618 118 IFAYGQTGTGKTFT 131 (560)
Q Consensus 118 i~aYG~TgSGKTyT 131 (560)
|+..|.+|||||+.
T Consensus 2 i~i~G~~GsGKSTl 15 (149)
T cd02027 2 IWLTGLSGSGKSTI 15 (149)
T ss_pred EEEEcCCCCCHHHH
Confidence 67789999999764
No 352
>KOG0742|consensus
Probab=35.13 E-value=18 Score=38.58 Aligned_cols=13 Identities=62% Similarity=1.022 Sum_probs=11.9
Q ss_pred EEEEEcccCCCce
Q psy7618 117 TIFAYGQTGTGKT 129 (560)
Q Consensus 117 ~i~aYG~TgSGKT 129 (560)
.|+-||+.|+|||
T Consensus 386 NilfyGPPGTGKT 398 (630)
T KOG0742|consen 386 NILFYGPPGTGKT 398 (630)
T ss_pred heeeeCCCCCCch
Confidence 4899999999998
No 353
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=35.13 E-value=16 Score=39.32 Aligned_cols=17 Identities=41% Similarity=0.645 Sum_probs=14.9
Q ss_pred EEEEEEcccCCCceEEe
Q psy7618 116 VTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyTm 132 (560)
+.|+-+|+||+|||+..
T Consensus 117 ~~iLL~GP~GsGKT~lA 133 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLA 133 (413)
T ss_pred ceEEEECCCCcCHHHHH
Confidence 57999999999999764
No 354
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=34.96 E-value=25 Score=31.13 Aligned_cols=19 Identities=37% Similarity=0.525 Sum_probs=16.3
Q ss_pred EEEEEEcccCCCceEEecc
Q psy7618 116 VTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyTm~G 134 (560)
..|+-+|.-|||||+-.-|
T Consensus 16 ~vi~L~GdLGaGKTtf~r~ 34 (123)
T PF02367_consen 16 DVILLSGDLGAGKTTFVRG 34 (123)
T ss_dssp EEEEEEESTTSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 5699999999999987655
No 355
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).
Probab=34.96 E-value=13 Score=43.40 Aligned_cols=20 Identities=30% Similarity=0.391 Sum_probs=17.6
Q ss_pred cEEEEEEcccCCCceEEecc
Q psy7618 115 NVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 115 N~~i~aYG~TgSGKTyTm~G 134 (560)
|+-.+..|+||||||++|.-
T Consensus 434 ~~n~~I~G~tGsGKS~~~~~ 453 (785)
T TIGR00929 434 LGHTLIFGPTGSGKTTLLNF 453 (785)
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 78889999999999999743
No 356
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=34.95 E-value=29 Score=32.33 Aligned_cols=27 Identities=22% Similarity=0.418 Sum_probs=21.2
Q ss_pred HHHHHHhc-CCcEEEEEEcccCCCceEE
Q psy7618 105 PMVNHMLH-GYNVTIFAYGQTGTGKTFT 131 (560)
Q Consensus 105 plv~~~l~-G~N~~i~aYG~TgSGKTyT 131 (560)
.++..+.. .....|+..|..|||||..
T Consensus 3 ~~~~~~~~~~~~~~ililGl~~sGKTtl 30 (175)
T PF00025_consen 3 SVLSKLKSKKKEIKILILGLDGSGKTTL 30 (175)
T ss_dssp HHHHHCTTTTSEEEEEEEESTTSSHHHH
T ss_pred HHHHHhcccCcEEEEEEECCCccchHHH
Confidence 35555664 6788999999999999953
No 357
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=34.93 E-value=16 Score=35.21 Aligned_cols=14 Identities=29% Similarity=0.544 Sum_probs=12.0
Q ss_pred EEEEcccCCCceEE
Q psy7618 118 IFAYGQTGTGKTFT 131 (560)
Q Consensus 118 i~aYG~TgSGKTyT 131 (560)
|+.+|++|||||+.
T Consensus 2 I~i~G~pGsGKsT~ 15 (210)
T TIGR01351 2 LVLLGPPGSGKGTQ 15 (210)
T ss_pred EEEECCCCCCHHHH
Confidence 67899999999763
No 358
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=34.93 E-value=14 Score=29.68 Aligned_cols=17 Identities=35% Similarity=0.479 Sum_probs=13.2
Q ss_pred EEEEcccCCCceEEecc
Q psy7618 118 IFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 118 i~aYG~TgSGKTyTm~G 134 (560)
++.+|..|+|||.+...
T Consensus 2 ~~~~g~~G~Gktt~~~~ 18 (99)
T cd01983 2 IVVTGKGGVGKTTLAAN 18 (99)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 56678889999987544
No 359
>KOG0745|consensus
Probab=34.83 E-value=17 Score=39.11 Aligned_cols=16 Identities=38% Similarity=0.740 Sum_probs=13.4
Q ss_pred cEEEEEEcccCCCceE
Q psy7618 115 NVTIFAYGQTGTGKTF 130 (560)
Q Consensus 115 N~~i~aYG~TgSGKTy 130 (560)
.+.|+..|+||||||+
T Consensus 226 KSNvLllGPtGsGKTl 241 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTL 241 (564)
T ss_pred cccEEEECCCCCchhH
Confidence 3557889999999985
No 360
>PRK14530 adenylate kinase; Provisional
Probab=34.83 E-value=16 Score=35.36 Aligned_cols=15 Identities=33% Similarity=0.552 Sum_probs=12.6
Q ss_pred EEEEEcccCCCceEE
Q psy7618 117 TIFAYGQTGTGKTFT 131 (560)
Q Consensus 117 ~i~aYG~TgSGKTyT 131 (560)
.|+..|++|||||+.
T Consensus 5 ~I~i~G~pGsGKsT~ 19 (215)
T PRK14530 5 RILLLGAPGAGKGTQ 19 (215)
T ss_pred EEEEECCCCCCHHHH
Confidence 477899999999864
No 361
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=34.79 E-value=29 Score=33.68 Aligned_cols=27 Identities=37% Similarity=0.441 Sum_probs=20.1
Q ss_pred HHHHHhc-C--CcEEEEEEcccCCCceEEe
Q psy7618 106 MVNHMLH-G--YNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 106 lv~~~l~-G--~N~~i~aYG~TgSGKTyTm 132 (560)
-++.++. | ....++-+|.+|+|||.-.
T Consensus 4 ~LD~~l~gGi~~g~~~li~G~~G~GKt~~~ 33 (224)
T TIGR03880 4 GLDEMLGGGFPEGHVIVVIGEYGTGKTTFS 33 (224)
T ss_pred hhHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 4667775 4 3567788999999998753
No 362
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=34.77 E-value=30 Score=36.32 Aligned_cols=31 Identities=23% Similarity=0.322 Sum_probs=24.9
Q ss_pred ccchHHHHHHhcC---CcEEEEEEcccCCCceEE
Q psy7618 101 NSVRPMVNHMLHG---YNVTIFAYGQTGTGKTFT 131 (560)
Q Consensus 101 ~~~~plv~~~l~G---~N~~i~aYG~TgSGKTyT 131 (560)
.++.+-+|.+|.| ......-||++|||||.-
T Consensus 109 sTG~~~LD~lLgGGi~~G~ItEI~G~~GsGKTql 142 (344)
T PLN03187 109 TTGSQALDELLGGGIETRCITEAFGEFRSGKTQL 142 (344)
T ss_pred cCCcHhHHhhcCCCCCCCeEEEEecCCCCChhHH
Confidence 3577889999986 445677999999999974
No 363
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=34.75 E-value=23 Score=39.56 Aligned_cols=41 Identities=22% Similarity=0.409 Sum_probs=26.3
Q ss_pred eeCCccccCCCcchhhhhccchHHHHHHhcCCcEEEEEEcccCCCceEE
Q psy7618 83 FTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFT 131 (560)
Q Consensus 83 F~FD~VF~~~a~Q~~vf~~~~~plv~~~l~G~N~~i~aYG~TgSGKTyT 131 (560)
-+|+.+++++. . ++.+...+.......|+-||++|+|||+.
T Consensus 62 ~~f~~iiGqs~----~----i~~l~~al~~~~~~~vLi~Ge~GtGKt~l 102 (531)
T TIGR02902 62 KSFDEIIGQEE----G----IKALKAALCGPNPQHVIIYGPPGVGKTAA 102 (531)
T ss_pred CCHHHeeCcHH----H----HHHHHHHHhCCCCceEEEECCCCCCHHHH
Confidence 45677765542 2 23333334555667788899999999864
No 364
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=34.73 E-value=20 Score=41.77 Aligned_cols=35 Identities=26% Similarity=0.429 Sum_probs=25.9
Q ss_pred hhhhccchHHHHHHh-cCCcEEEEEEcccCCCceEEe
Q psy7618 97 EIYENSVRPMVNHML-HGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 97 ~vf~~~~~plv~~~l-~G~N~~i~aYG~TgSGKTyTm 132 (560)
.||.- +......++ .|.|-||+.-|.+|||||.|.
T Consensus 68 Hifai-A~~Ay~~m~~~~~~QsIiiSGESGAGKTe~t 103 (767)
T cd01386 68 HIYSL-AQTAYRALLETRRDQSIIFLGRSGAGKTTSC 103 (767)
T ss_pred CHHHH-HHHHHHHHHHcCCCceEEEecCCCCCcHHHH
Confidence 46643 333334444 689999999999999999986
No 365
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=34.52 E-value=26 Score=38.61 Aligned_cols=28 Identities=29% Similarity=0.491 Sum_probs=22.6
Q ss_pred chHHHHHHhcC---CcEEEEEEcccCCCceE
Q psy7618 103 VRPMVNHMLHG---YNVTIFAYGQTGTGKTF 130 (560)
Q Consensus 103 ~~plv~~~l~G---~N~~i~aYG~TgSGKTy 130 (560)
+-|=+|.++.| .+.+++.+|++|||||.
T Consensus 6 GI~gLD~il~GGlp~g~~~Li~G~pGsGKT~ 36 (484)
T TIGR02655 6 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTL 36 (484)
T ss_pred CchhHHHhcCCCCCCCeEEEEEcCCCCCHHH
Confidence 34557788875 57899999999999985
No 366
>PRK10689 transcription-repair coupling factor; Provisional
Probab=34.50 E-value=22 Score=43.45 Aligned_cols=38 Identities=18% Similarity=0.250 Sum_probs=23.0
Q ss_pred cCCCcchhhhhccchHHHHHHhcCCcEEEEEEcccCCCceEE
Q psy7618 90 GMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFT 131 (560)
Q Consensus 90 ~~~a~Q~~vf~~~~~plv~~~l~G~N~~i~aYG~TgSGKTyT 131 (560)
.+...|.+.+..+ +.+.-.+...-++++|+||||||-+
T Consensus 600 ~~T~~Q~~aI~~i----l~d~~~~~~~d~Ll~a~TGsGKT~v 637 (1147)
T PRK10689 600 ETTPDQAQAINAV----LSDMCQPLAMDRLVCGDVGFGKTEV 637 (1147)
T ss_pred CCCHHHHHHHHHH----HHHhhcCCCCCEEEEcCCCcCHHHH
Confidence 3445566555442 2222233344589999999999964
No 367
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=34.37 E-value=27 Score=39.58 Aligned_cols=24 Identities=21% Similarity=0.422 Sum_probs=19.4
Q ss_pred EEEEEEcccCCCceEEeccCCCCcChHHHHHH
Q psy7618 116 VTIFAYGQTGTGKTFTMEGSQMERGIMQNAFR 147 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyTm~G~~~~~Giipr~l~ 147 (560)
..++.+|+||||||..+ +||..+.
T Consensus 159 ~hvLviapTgSGKg~g~--------VIPnLL~ 182 (606)
T PRK13897 159 QHALLFAPTGSGKGVGF--------VIPNLLF 182 (606)
T ss_pred ceEEEEcCCCCCcceEE--------ehhhHHh
Confidence 35889999999999987 5666664
No 368
>CHL00176 ftsH cell division protein; Validated
Probab=34.11 E-value=21 Score=40.76 Aligned_cols=17 Identities=35% Similarity=0.548 Sum_probs=14.8
Q ss_pred EEEEEEcccCCCceEEe
Q psy7618 116 VTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyTm 132 (560)
..|+-||++|+|||+..
T Consensus 217 ~gVLL~GPpGTGKT~LA 233 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLA 233 (638)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 35899999999999875
No 369
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=33.95 E-value=17 Score=40.15 Aligned_cols=23 Identities=26% Similarity=0.302 Sum_probs=17.5
Q ss_pred HhcCCcE-EEEEEcccCCCceEEe
Q psy7618 110 MLHGYNV-TIFAYGQTGTGKTFTM 132 (560)
Q Consensus 110 ~l~G~N~-~i~aYG~TgSGKTyTm 132 (560)
+-.|.-. .++-||+.|+|||.+.
T Consensus 29 ~~~~ri~ha~Lf~Gp~G~GKTT~A 52 (491)
T PRK14964 29 FTLNKIPQSILLVGASGVGKTTCA 52 (491)
T ss_pred HHcCCCCceEEEECCCCccHHHHH
Confidence 3355444 7999999999999864
No 370
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=33.90 E-value=14 Score=38.94 Aligned_cols=14 Identities=36% Similarity=0.529 Sum_probs=12.1
Q ss_pred EEEcccCCCceEEe
Q psy7618 119 FAYGQTGTGKTFTM 132 (560)
Q Consensus 119 ~aYG~TgSGKTyTm 132 (560)
.--|++|||||++|
T Consensus 35 ~lLGPSGcGKTTlL 48 (352)
T COG3842 35 TLLGPSGCGKTTLL 48 (352)
T ss_pred EEECCCCCCHHHHH
Confidence 35699999999987
No 371
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=33.77 E-value=21 Score=36.82 Aligned_cols=16 Identities=38% Similarity=0.391 Sum_probs=13.8
Q ss_pred EEEEEcccCCCceEEe
Q psy7618 117 TIFAYGQTGTGKTFTM 132 (560)
Q Consensus 117 ~i~aYG~TgSGKTyTm 132 (560)
.|+-+|+|+||||..-
T Consensus 5 ~i~I~GPTAsGKT~la 20 (308)
T COG0324 5 LIVIAGPTASGKTALA 20 (308)
T ss_pred EEEEECCCCcCHHHHH
Confidence 5788999999999764
No 372
>PTZ00110 helicase; Provisional
Probab=33.65 E-value=29 Score=38.91 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=18.9
Q ss_pred HHHHhcCCcEEEEEEcccCCCceEEe
Q psy7618 107 VNHMLHGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 107 v~~~l~G~N~~i~aYG~TgSGKTyTm 132 (560)
+..++.|.+. ++.++||||||.+.
T Consensus 161 ip~~l~G~dv--I~~ApTGSGKTlay 184 (545)
T PTZ00110 161 WPIALSGRDM--IGIAETGSGKTLAF 184 (545)
T ss_pred HHHHhcCCCE--EEEeCCCChHHHHH
Confidence 4566889876 56789999999874
No 373
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=33.52 E-value=21 Score=42.51 Aligned_cols=27 Identities=22% Similarity=0.228 Sum_probs=18.7
Q ss_pred HHHHHhcCCcEEEEEEcccCCCceEEe
Q psy7618 106 MVNHMLHGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 106 lv~~~l~G~N~~i~aYG~TgSGKTyTm 132 (560)
+..+.-.+...-++..|+||||||-+.
T Consensus 463 I~~d~~~~~~~d~Ll~adTGsGKT~va 489 (926)
T TIGR00580 463 IKADMESPRPMDRLVCGDVGFGKTEVA 489 (926)
T ss_pred HHhhhcccCcCCEEEECCCCccHHHHH
Confidence 333433444455789999999999754
No 374
>PRK13767 ATP-dependent helicase; Provisional
Probab=33.44 E-value=26 Score=41.63 Aligned_cols=23 Identities=35% Similarity=0.449 Sum_probs=17.4
Q ss_pred HHHhcCCcEEEEEEcccCCCceEEe
Q psy7618 108 NHMLHGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 108 ~~~l~G~N~~i~aYG~TgSGKTyTm 132 (560)
..+++|.|+. ...+||||||...
T Consensus 42 ~~il~g~nvl--i~APTGSGKTlaa 64 (876)
T PRK13767 42 PLIHEGKNVL--ISSPTGSGKTLAA 64 (876)
T ss_pred HHHHcCCCEE--EECCCCCcHHHHH
Confidence 3457898864 4669999999863
No 375
>PRK14527 adenylate kinase; Provisional
Probab=33.36 E-value=22 Score=33.63 Aligned_cols=17 Identities=24% Similarity=0.386 Sum_probs=14.1
Q ss_pred EEEEEEcccCCCceEEe
Q psy7618 116 VTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyTm 132 (560)
-.|+.+|++|||||...
T Consensus 7 ~~i~i~G~pGsGKsT~a 23 (191)
T PRK14527 7 KVVIFLGPPGAGKGTQA 23 (191)
T ss_pred cEEEEECCCCCCHHHHH
Confidence 46899999999998743
No 376
>PRK00300 gmk guanylate kinase; Provisional
Probab=33.27 E-value=22 Score=33.83 Aligned_cols=17 Identities=29% Similarity=0.487 Sum_probs=13.8
Q ss_pred cEEEEEEcccCCCceEE
Q psy7618 115 NVTIFAYGQTGTGKTFT 131 (560)
Q Consensus 115 N~~i~aYG~TgSGKTyT 131 (560)
...|.-.|++|||||..
T Consensus 5 g~~i~i~G~sGsGKstl 21 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTL 21 (205)
T ss_pred CCEEEEECCCCCCHHHH
Confidence 34678899999999954
No 377
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=33.19 E-value=15 Score=35.55 Aligned_cols=16 Identities=25% Similarity=0.366 Sum_probs=13.4
Q ss_pred EEEEEcccCCCceEEe
Q psy7618 117 TIFAYGQTGTGKTFTM 132 (560)
Q Consensus 117 ~i~aYG~TgSGKTyTm 132 (560)
.+.-.|+.|||||.+|
T Consensus 27 i~~ivGpNGaGKSTll 42 (212)
T cd03274 27 FSAIVGPNGSGKSNVI 42 (212)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4457899999999887
No 378
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=33.12 E-value=29 Score=40.85 Aligned_cols=33 Identities=12% Similarity=0.213 Sum_probs=21.4
Q ss_pred hhhccchHHHHHHhcCCcEEEEEEcccCCCceEEec
Q psy7618 98 IYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTME 133 (560)
Q Consensus 98 vf~~~~~plv~~~l~G~N~~i~aYG~TgSGKTyTm~ 133 (560)
||.. ...+++.+-++. .|+..|+||||||..+.
T Consensus 6 i~~~-~~~i~~~l~~~~--~vvv~A~TGSGKTt~~p 38 (812)
T PRK11664 6 VAAV-LPELLTALKTAP--QVLLKAPTGAGKSTWLP 38 (812)
T ss_pred HHHH-HHHHHHHHHhCC--CEEEEcCCCCCHHHHHH
Confidence 4433 344555554443 47789999999998763
No 379
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=33.11 E-value=19 Score=34.58 Aligned_cols=16 Identities=38% Similarity=0.455 Sum_probs=13.0
Q ss_pred EEEEEEcccCCCceEE
Q psy7618 116 VTIFAYGQTGTGKTFT 131 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyT 131 (560)
..|.-.|++|||||+.
T Consensus 7 ~vi~I~G~sGsGKSTl 22 (207)
T TIGR00235 7 IIIGIGGGSGSGKTTV 22 (207)
T ss_pred EEEEEECCCCCCHHHH
Confidence 4567889999999964
No 380
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=33.06 E-value=16 Score=42.16 Aligned_cols=43 Identities=23% Similarity=0.425 Sum_probs=26.0
Q ss_pred eeCCccccCCCcchhhhhccchHHHHHHhcCCcEEEEEEcccCCCceEE
Q psy7618 83 FTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFT 131 (560)
Q Consensus 83 F~FD~VF~~~a~Q~~vf~~~~~plv~~~l~G~N~~i~aYG~TgSGKTyT 131 (560)
+.|+.+++.+..-..+.+. +.. +...+..|+-+|.+|||||+.
T Consensus 373 ~~~~~liG~S~~~~~~~~~-----~~~-~a~~~~pVLI~GE~GTGK~~l 415 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQ-----VEM-VAQSDSTVLILGETGTGKELI 415 (686)
T ss_pred ccccceeecCHHHHHHHHH-----HHH-HhCCCCCEEEECCCCcCHHHH
Confidence 4555555544333333332 222 345677899999999999863
No 381
>KOG0241|consensus
Probab=33.05 E-value=12 Score=43.56 Aligned_cols=27 Identities=37% Similarity=0.672 Sum_probs=22.8
Q ss_pred cccccccccceeeEeecchhhcccccC
Q psy7618 283 KKRHKCIVECCYLELYQGKIRDLLNVS 309 (560)
Q Consensus 283 ~~~~~~~v~~s~lei~~~~~~dll~~~ 309 (560)
.....|.|++||.|||+++++|||+..
T Consensus 137 n~~~tfkVeVSymEIynEkv~DLLdPk 163 (1714)
T KOG0241|consen 137 NPSQTFKVEVSYMEIYNEKVRDLLDPK 163 (1714)
T ss_pred CCCceEEEEEEHHHHhhcchhhhhCCC
Confidence 344668899999999999999999753
No 382
>KOG0741|consensus
Probab=32.99 E-value=22 Score=39.23 Aligned_cols=14 Identities=57% Similarity=0.985 Sum_probs=12.6
Q ss_pred EEEEEcccCCCceE
Q psy7618 117 TIFAYGQTGTGKTF 130 (560)
Q Consensus 117 ~i~aYG~TgSGKTy 130 (560)
.|+-||+.|+|||-
T Consensus 258 GiLLyGPPGTGKTL 271 (744)
T KOG0741|consen 258 GILLYGPPGTGKTL 271 (744)
T ss_pred eEEEECCCCCChhH
Confidence 48999999999985
No 383
>PRK10867 signal recognition particle protein; Provisional
Probab=32.98 E-value=20 Score=38.97 Aligned_cols=20 Identities=35% Similarity=0.420 Sum_probs=16.5
Q ss_pred cEEEEEEcccCCCceEEecc
Q psy7618 115 NVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 115 N~~i~aYG~TgSGKTyTm~G 134 (560)
-..|+..|++|||||.|...
T Consensus 100 p~vI~~vG~~GsGKTTtaak 119 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGK 119 (433)
T ss_pred CEEEEEECCCCCcHHHHHHH
Confidence 46788889999999998643
No 384
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=32.97 E-value=22 Score=27.62 Aligned_cols=14 Identities=36% Similarity=0.555 Sum_probs=10.8
Q ss_pred EEEEcccCCCceEE
Q psy7618 118 IFAYGQTGTGKTFT 131 (560)
Q Consensus 118 i~aYG~TgSGKTyT 131 (560)
|.-.|..|||||..
T Consensus 2 i~i~G~~gsGKst~ 15 (69)
T cd02019 2 IAITGGSGSGKSTV 15 (69)
T ss_pred EEEECCCCCCHHHH
Confidence 44569999999754
No 385
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=32.94 E-value=18 Score=34.10 Aligned_cols=14 Identities=36% Similarity=0.636 Sum_probs=11.8
Q ss_pred EEEEcccCCCceEE
Q psy7618 118 IFAYGQTGTGKTFT 131 (560)
Q Consensus 118 i~aYG~TgSGKTyT 131 (560)
|+-.|++|||||+-
T Consensus 3 iiilG~pGaGK~T~ 16 (178)
T COG0563 3 ILILGPPGAGKSTL 16 (178)
T ss_pred EEEECCCCCCHHHH
Confidence 67889999999753
No 386
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=32.75 E-value=23 Score=42.47 Aligned_cols=27 Identities=26% Similarity=0.444 Sum_probs=21.2
Q ss_pred HHHHHhcCCcEEEEEEcccCCCceEEec
Q psy7618 106 MVNHMLHGYNVTIFAYGQTGTGKTFTME 133 (560)
Q Consensus 106 lv~~~l~G~N~~i~aYG~TgSGKTyTm~ 133 (560)
.|..++.+.+. ++..|..|+||||+|-
T Consensus 354 Av~~il~s~~v-~vv~G~AGTGKTT~l~ 380 (988)
T PRK13889 354 ALAHVTDGRDL-GVVVGYAGTGKSAMLG 380 (988)
T ss_pred HHHHHhcCCCe-EEEEeCCCCCHHHHHH
Confidence 46677777765 4599999999999864
No 387
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=32.73 E-value=18 Score=34.65 Aligned_cols=20 Identities=20% Similarity=0.247 Sum_probs=18.5
Q ss_pred cEEEEEEcccCCCceEEecc
Q psy7618 115 NVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 115 N~~i~aYG~TgSGKTyTm~G 134 (560)
.+.|..||.+|.|||+.-+|
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g 41 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFG 41 (191)
T ss_pred CCeEEEECCCCCChHHHHHH
Confidence 47899999999999999988
No 388
>PHA02774 E1; Provisional
Probab=32.56 E-value=27 Score=39.16 Aligned_cols=29 Identities=24% Similarity=0.457 Sum_probs=21.4
Q ss_pred HHHHHhcCC--cEEEEEEcccCCCceEEecc
Q psy7618 106 MVNHMLHGY--NVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 106 lv~~~l~G~--N~~i~aYG~TgSGKTyTm~G 134 (560)
.+..++.|. ..|++-||+.|+||||--+.
T Consensus 423 ~lk~~l~~~PKknciv~~GPP~TGKS~fa~s 453 (613)
T PHA02774 423 ALKDFLKGIPKKNCLVIYGPPDTGKSMFCMS 453 (613)
T ss_pred HHHHHHhcCCcccEEEEECCCCCCHHHHHHH
Confidence 345556663 36999999999999986544
No 389
>KOG0735|consensus
Probab=32.53 E-value=18 Score=41.14 Aligned_cols=19 Identities=37% Similarity=0.644 Sum_probs=16.1
Q ss_pred CcEEEEEEcccCCCceEEe
Q psy7618 114 YNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 114 ~N~~i~aYG~TgSGKTyTm 132 (560)
....|+-||+.|+||||..
T Consensus 700 ~~~giLLyGppGcGKT~la 718 (952)
T KOG0735|consen 700 LRTGILLYGPPGCGKTLLA 718 (952)
T ss_pred cccceEEECCCCCcHHHHH
Confidence 4456999999999999965
No 390
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=32.51 E-value=28 Score=33.71 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=14.8
Q ss_pred HHHHhcCCcEEEEEEcccCCCceEE
Q psy7618 107 VNHMLHGYNVTIFAYGQTGTGKTFT 131 (560)
Q Consensus 107 v~~~l~G~N~~i~aYG~TgSGKTyT 131 (560)
+.-+..|. .-|+.+|+.|+|||..
T Consensus 15 L~iAAaG~-h~lLl~GppGtGKTml 38 (206)
T PF01078_consen 15 LEIAAAGG-HHLLLIGPPGTGKTML 38 (206)
T ss_dssp HHHHHHCC---EEEES-CCCTHHHH
T ss_pred HHHHHcCC-CCeEEECCCCCCHHHH
Confidence 33334453 4689999999999854
No 391
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=32.50 E-value=28 Score=41.25 Aligned_cols=17 Identities=35% Similarity=0.434 Sum_probs=14.9
Q ss_pred EEEEEEcccCCCceEEe
Q psy7618 116 VTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyTm 132 (560)
+.++-.|+||+|||++.
T Consensus 597 ~~~lf~Gp~GvGKT~lA 613 (852)
T TIGR03345 597 GVFLLVGPSGVGKTETA 613 (852)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 57899999999999874
No 392
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=32.38 E-value=22 Score=41.38 Aligned_cols=28 Identities=25% Similarity=0.410 Sum_probs=20.7
Q ss_pred HHHHHhcCCcEEEEEEcccCCCceEEecc
Q psy7618 106 MVNHMLHGYNVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 106 lv~~~l~G~N~~i~aYG~TgSGKTyTm~G 134 (560)
.|..++.+ +..++..|..|+||||+|-+
T Consensus 360 Av~~i~~s-~~~~il~G~aGTGKTtll~~ 387 (744)
T TIGR02768 360 AVRHVTGS-GDIAVVVGRAGTGKSTMLKA 387 (744)
T ss_pred HHHHHhcC-CCEEEEEecCCCCHHHHHHH
Confidence 34455555 44678999999999998855
No 393
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=32.33 E-value=24 Score=32.94 Aligned_cols=19 Identities=32% Similarity=0.628 Sum_probs=15.7
Q ss_pred cCCcEEEEEEcccCCCceE
Q psy7618 112 HGYNVTIFAYGQTGTGKTF 130 (560)
Q Consensus 112 ~G~N~~i~aYG~TgSGKTy 130 (560)
..++..|+-+|.+||||+.
T Consensus 19 a~~~~pVlI~GE~GtGK~~ 37 (168)
T PF00158_consen 19 ASSDLPVLITGETGTGKEL 37 (168)
T ss_dssp TTSTS-EEEECSTTSSHHH
T ss_pred hCCCCCEEEEcCCCCcHHH
Confidence 4778999999999999974
No 394
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=32.27 E-value=17 Score=39.13 Aligned_cols=24 Identities=29% Similarity=0.599 Sum_probs=17.7
Q ss_pred HHhcCCcEEEEEEcccCCCceEEecc
Q psy7618 109 HMLHGYNVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 109 ~~l~G~N~~i~aYG~TgSGKTyTm~G 134 (560)
.+=.++|. +-.|++|+||||.-.+
T Consensus 205 fve~~~Nl--i~lGp~GTGKThla~~ 228 (449)
T TIGR02688 205 LVEPNYNL--IELGPKGTGKSYIYNN 228 (449)
T ss_pred HHhcCCcE--EEECCCCCCHHHHHHH
Confidence 33355664 6689999999998765
No 395
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=32.24 E-value=24 Score=33.51 Aligned_cols=16 Identities=38% Similarity=0.588 Sum_probs=12.0
Q ss_pred EEEEEEcccCCCceEE
Q psy7618 116 VTIFAYGQTGTGKTFT 131 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyT 131 (560)
-+|+-.|++|||||.-
T Consensus 4 ~~vlL~Gps~SGKTaL 19 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTAL 19 (181)
T ss_dssp -EEEEE-STTSSHHHH
T ss_pred ceEEEEcCCCCCHHHH
Confidence 4688999999999853
No 396
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=32.00 E-value=20 Score=38.75 Aligned_cols=20 Identities=35% Similarity=0.438 Sum_probs=16.7
Q ss_pred cEEEEEEcccCCCceEEecc
Q psy7618 115 NVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 115 N~~i~aYG~TgSGKTyTm~G 134 (560)
...++..|++|||||.|...
T Consensus 99 p~vi~~vG~~GsGKTTtaak 118 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGK 118 (428)
T ss_pred CEEEEEECCCCCcHHHHHHH
Confidence 46788999999999999643
No 397
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=31.93 E-value=19 Score=38.90 Aligned_cols=21 Identities=33% Similarity=0.354 Sum_probs=17.2
Q ss_pred CcEEEEEEcccCCCceEEecc
Q psy7618 114 YNVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 114 ~N~~i~aYG~TgSGKTyTm~G 134 (560)
....|+..|.+|+|||+|..-
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaK 119 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTK 119 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 346789999999999999643
No 398
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=31.86 E-value=19 Score=38.81 Aligned_cols=17 Identities=41% Similarity=0.511 Sum_probs=14.4
Q ss_pred EEEEEEcccCCCceEEe
Q psy7618 116 VTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyTm 132 (560)
..|+-+|++|+|||+..
T Consensus 48 ~~ILLiGppG~GKT~lA 64 (441)
T TIGR00390 48 KNILMIGPTGVGKTEIA 64 (441)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45889999999999754
No 399
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=31.86 E-value=16 Score=40.48 Aligned_cols=19 Identities=42% Similarity=0.461 Sum_probs=15.3
Q ss_pred EEEEEEcccCCCceEEecc
Q psy7618 116 VTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyTm~G 134 (560)
..|.-.|++|+|||+|+..
T Consensus 351 ~vIaLVGPtGvGKTTtaak 369 (559)
T PRK12727 351 GVIALVGPTGAGKTTTIAK 369 (559)
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 4566679999999999754
No 400
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=31.79 E-value=24 Score=36.70 Aligned_cols=36 Identities=28% Similarity=0.331 Sum_probs=23.3
Q ss_pred CcchhhhhccchHHHHHHhcCC-cEEEEEEcccCCCceEEe
Q psy7618 93 ATQTEIYENSVRPMVNHMLHGY-NVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 93 a~Q~~vf~~~~~plv~~~l~G~-N~~i~aYG~TgSGKTyTm 132 (560)
..|+++.+. +...+-.|. ...++-||+.|+|||.+.
T Consensus 17 ig~~~~~~~----l~~~~~~~~~~~~~Ll~G~~G~GKt~~a 53 (355)
T TIGR02397 17 IGQEHIVQT----LKNAIKNGRIAHAYLFSGPRGTGKTSIA 53 (355)
T ss_pred cCcHHHHHH----HHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 345555443 333334553 456899999999999765
No 401
>PRK13531 regulatory ATPase RavA; Provisional
Probab=31.76 E-value=24 Score=38.76 Aligned_cols=28 Identities=25% Similarity=0.451 Sum_probs=19.6
Q ss_pred chHHHHHHhcCCcEEEEEEcccCCCceEEe
Q psy7618 103 VRPMVNHMLHGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 103 ~~plv~~~l~G~N~~i~aYG~TgSGKTyTm 132 (560)
++-++..++.|.+ |+-+|++|+|||+.-
T Consensus 29 I~lll~aalag~h--VLL~GpPGTGKT~LA 56 (498)
T PRK13531 29 IRLCLLAALSGES--VFLLGPPGIAKSLIA 56 (498)
T ss_pred HHHHHHHHccCCC--EEEECCCChhHHHHH
Confidence 4445555555555 578999999999753
No 402
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=31.64 E-value=17 Score=35.04 Aligned_cols=17 Identities=41% Similarity=0.604 Sum_probs=14.8
Q ss_pred EEEEEcccCCCceEEec
Q psy7618 117 TIFAYGQTGTGKTFTME 133 (560)
Q Consensus 117 ~i~aYG~TgSGKTyTm~ 133 (560)
++.-+|++|||||..+.
T Consensus 24 ~~~i~G~NGsGKTTLl~ 40 (204)
T cd03240 24 LTLIVGQNGAGKTTIIE 40 (204)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 78899999999998763
No 403
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=31.61 E-value=17 Score=38.04 Aligned_cols=15 Identities=27% Similarity=0.592 Sum_probs=13.0
Q ss_pred EEEEcccCCCceEEe
Q psy7618 118 IFAYGQTGTGKTFTM 132 (560)
Q Consensus 118 i~aYG~TgSGKTyTm 132 (560)
+.-.|++|+|||.+|
T Consensus 32 ~vllGPSGcGKSTlL 46 (338)
T COG3839 32 VVLLGPSGCGKSTLL 46 (338)
T ss_pred EEEECCCCCCHHHHH
Confidence 556799999999987
No 404
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=31.58 E-value=21 Score=39.01 Aligned_cols=42 Identities=26% Similarity=0.347 Sum_probs=25.9
Q ss_pred eCCccccCCCcchhhhhccchHHHHHHhcCCc-EEEEEEcccCCCceEEec
Q psy7618 84 TFDAVYGMQATQTEIYENSVRPMVNHMLHGYN-VTIFAYGQTGTGKTFTME 133 (560)
Q Consensus 84 ~FD~VF~~~a~Q~~vf~~~~~plv~~~l~G~N-~~i~aYG~TgSGKTyTm~ 133 (560)
+||.|+++ +.+ +..+...+-.|.- ..++-||+.|+|||.+..
T Consensus 15 ~~~diiGq----~~~----v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~ 57 (451)
T PRK06305 15 TFSEILGQ----DAV----VAVLKNALRFNRAAHAYLFSGIRGTGKTTLAR 57 (451)
T ss_pred CHHHhcCc----HHH----HHHHHHHHHcCCCceEEEEEcCCCCCHHHHHH
Confidence 56777653 333 2333334445543 457779999999997753
No 405
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=31.47 E-value=24 Score=36.50 Aligned_cols=15 Identities=40% Similarity=0.485 Sum_probs=13.0
Q ss_pred EEEEEcccCCCceEE
Q psy7618 117 TIFAYGQTGTGKTFT 131 (560)
Q Consensus 117 ~i~aYG~TgSGKTyT 131 (560)
.|+..|+||||||..
T Consensus 6 ~i~i~GptgsGKt~l 20 (307)
T PRK00091 6 VIVIVGPTASGKTAL 20 (307)
T ss_pred EEEEECCCCcCHHHH
Confidence 588999999999854
No 406
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=31.34 E-value=21 Score=36.30 Aligned_cols=15 Identities=33% Similarity=0.530 Sum_probs=12.9
Q ss_pred EEEEEcccCCCceEE
Q psy7618 117 TIFAYGQTGTGKTFT 131 (560)
Q Consensus 117 ~i~aYG~TgSGKTyT 131 (560)
.|+..|.+|||||+.
T Consensus 4 liil~G~pGSGKSTl 18 (300)
T PHA02530 4 IILTVGVPGSGKSTW 18 (300)
T ss_pred EEEEEcCCCCCHHHH
Confidence 578899999999764
No 407
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=31.09 E-value=34 Score=37.92 Aligned_cols=30 Identities=27% Similarity=0.365 Sum_probs=23.7
Q ss_pred cchHHHHHHhcC---CcEEEEEEcccCCCceEE
Q psy7618 102 SVRPMVNHMLHG---YNVTIFAYGQTGTGKTFT 131 (560)
Q Consensus 102 ~~~plv~~~l~G---~N~~i~aYG~TgSGKTyT 131 (560)
++-+=++.++.| ....++.+|.+|||||.-
T Consensus 15 TGI~~LD~~l~GG~p~Gs~~li~G~pGsGKT~l 47 (509)
T PRK09302 15 TGIEGFDDITHGGLPKGRPTLVSGTAGTGKTLF 47 (509)
T ss_pred CCchhHHHhhcCCCCCCcEEEEEeCCCCCHHHH
Confidence 355667888875 568899999999999854
No 408
>PLN02200 adenylate kinase family protein
Probab=31.01 E-value=22 Score=35.15 Aligned_cols=16 Identities=31% Similarity=0.549 Sum_probs=13.7
Q ss_pred EEEEEEcccCCCceEE
Q psy7618 116 VTIFAYGQTGTGKTFT 131 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyT 131 (560)
..|+..|++|||||+-
T Consensus 44 ~ii~I~G~PGSGKsT~ 59 (234)
T PLN02200 44 FITFVLGGPGSGKGTQ 59 (234)
T ss_pred EEEEEECCCCCCHHHH
Confidence 4689999999999864
No 409
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=31.00 E-value=19 Score=40.15 Aligned_cols=45 Identities=20% Similarity=0.378 Sum_probs=29.9
Q ss_pred eeeeCCccccCCCcchhhhhccchHHHHHHhcCCcEEEEEEcccCCCceEE
Q psy7618 81 RRFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFT 131 (560)
Q Consensus 81 ~~F~FD~VF~~~a~Q~~vf~~~~~plv~~~l~G~N~~i~aYG~TgSGKTyT 131 (560)
..+.||.+.+.+..-..+.+. +.. +...+.-|+-+|.+||||++.
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~-----~~~-~A~~~~pvlI~GE~GtGK~~l 243 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQ-----ARK-LAMLDAPLLITGDTGTGKDLL 243 (520)
T ss_pred ccccccceeECCHHHHHHHHH-----HHH-HhCCCCCEEEECCCCccHHHH
Confidence 457899888765543444433 222 233577799999999999864
No 410
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=30.97 E-value=25 Score=34.83 Aligned_cols=17 Identities=24% Similarity=0.524 Sum_probs=14.2
Q ss_pred EEEEEEcccCCCceEEe
Q psy7618 116 VTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyTm 132 (560)
-.+..+|++|||||..+
T Consensus 31 e~~~i~G~nGsGKSTL~ 47 (235)
T COG1122 31 ERVLLIGPNGSGKSTLL 47 (235)
T ss_pred CEEEEECCCCCCHHHHH
Confidence 36788999999999765
No 411
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=30.91 E-value=26 Score=36.89 Aligned_cols=27 Identities=22% Similarity=0.362 Sum_probs=19.2
Q ss_pred HHHHHhcCC-cEEEEEEcccCCCceEEe
Q psy7618 106 MVNHMLHGY-NVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 106 lv~~~l~G~-N~~i~aYG~TgSGKTyTm 132 (560)
+...+-.|. ...++-||+.|+|||++.
T Consensus 29 l~~~i~~~~~~~~~L~~G~~G~GKt~~a 56 (367)
T PRK14970 29 LLNAIENNHLAQALLFCGPRGVGKTTCA 56 (367)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 444444564 447888999999999765
No 412
>PTZ00035 Rad51 protein; Provisional
Probab=30.77 E-value=42 Score=35.16 Aligned_cols=32 Identities=22% Similarity=0.268 Sum_probs=25.8
Q ss_pred ccchHHHHHHhcC---CcEEEEEEcccCCCceEEe
Q psy7618 101 NSVRPMVNHMLHG---YNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 101 ~~~~plv~~~l~G---~N~~i~aYG~TgSGKTyTm 132 (560)
.++.+-+|.+|.| ....+.-||++|||||..+
T Consensus 101 sTG~~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~ 135 (337)
T PTZ00035 101 TTGSTQLDKLLGGGIETGSITELFGEFRTGKTQLC 135 (337)
T ss_pred cCCcHHHHHHhCCCCCCCeEEEEECCCCCchhHHH
Confidence 3577889999986 2566889999999999765
No 413
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=30.70 E-value=23 Score=40.01 Aligned_cols=27 Identities=33% Similarity=0.327 Sum_probs=19.0
Q ss_pred HHHHHhcCCcEEEEEEcccCCCceEEecc
Q psy7618 106 MVNHMLHGYNVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 106 lv~~~l~G~N~~i~aYG~TgSGKTyTm~G 134 (560)
.+..++. +...+..|..|||||||+..
T Consensus 153 A~~~al~--~~~~vitGgpGTGKTt~v~~ 179 (586)
T TIGR01447 153 AVALALK--SNFSLITGGPGTGKTTTVAR 179 (586)
T ss_pred HHHHHhh--CCeEEEEcCCCCCHHHHHHH
Confidence 3445555 34566789999999999643
No 414
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=30.70 E-value=18 Score=33.45 Aligned_cols=16 Identities=44% Similarity=0.567 Sum_probs=13.0
Q ss_pred EEEEcccCCCceEEec
Q psy7618 118 IFAYGQTGTGKTFTME 133 (560)
Q Consensus 118 i~aYG~TgSGKTyTm~ 133 (560)
++..|++|+|||.+..
T Consensus 3 ~~~~G~~G~GKTt~~~ 18 (173)
T cd03115 3 ILLVGLQGVGKTTTAA 18 (173)
T ss_pred EEEECCCCCCHHHHHH
Confidence 5567999999998753
No 415
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=30.70 E-value=20 Score=40.12 Aligned_cols=43 Identities=21% Similarity=0.446 Sum_probs=26.7
Q ss_pred eeeCCccccCCCcchhhhhccchHHHHHHhcCCcEEEEEEcccCCCceE
Q psy7618 82 RFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTF 130 (560)
Q Consensus 82 ~F~FD~VF~~~a~Q~~vf~~~~~plv~~~l~G~N~~i~aYG~TgSGKTy 130 (560)
.|.|+.+++.+..-+++ ...+.. +...+..|+-+|.+||||++
T Consensus 215 ~~~f~~iiG~S~~m~~~-----~~~i~~-~A~s~~pVLI~GE~GTGKe~ 257 (538)
T PRK15424 215 RYVLGDLLGQSPQMEQV-----RQTILL-YARSSAAVLIQGETGTGKEL 257 (538)
T ss_pred ccchhheeeCCHHHHHH-----HHHHHH-HhCCCCcEEEECCCCCCHHH
Confidence 36677666554322222 222322 35668899999999999974
No 416
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=30.69 E-value=18 Score=34.93 Aligned_cols=18 Identities=33% Similarity=0.525 Sum_probs=14.6
Q ss_pred cEEEEEEcccCCCceEEe
Q psy7618 115 NVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 115 N~~i~aYG~TgSGKTyTm 132 (560)
+..+.-.|++|||||..|
T Consensus 28 ~~~~~i~G~NGsGKSTll 45 (213)
T cd03279 28 NGLFLICGPTGAGKSTIL 45 (213)
T ss_pred cCEEEEECCCCCCHHHHH
Confidence 345668999999999876
No 417
>KOG0744|consensus
Probab=30.59 E-value=29 Score=36.00 Aligned_cols=21 Identities=38% Similarity=0.506 Sum_probs=16.6
Q ss_pred CcEEEEEEcccCCCceEEecc
Q psy7618 114 YNVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 114 ~N~~i~aYG~TgSGKTyTm~G 134 (560)
.|-.|+..||.|+|||...-+
T Consensus 176 ~NRliLlhGPPGTGKTSLCKa 196 (423)
T KOG0744|consen 176 WNRLILLHGPPGTGKTSLCKA 196 (423)
T ss_pred eeeEEEEeCCCCCChhHHHHH
Confidence 455688899999999986655
No 418
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=30.52 E-value=23 Score=39.25 Aligned_cols=17 Identities=35% Similarity=0.401 Sum_probs=14.5
Q ss_pred EEEEEEcccCCCceEEe
Q psy7618 116 VTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyTm 132 (560)
..++-||+.|+|||.+.
T Consensus 37 ha~Lf~GppGtGKTTlA 53 (504)
T PRK14963 37 HAYLFSGPRGVGKTTTA 53 (504)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45699999999999775
No 419
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=30.50 E-value=23 Score=36.92 Aligned_cols=15 Identities=33% Similarity=0.339 Sum_probs=12.7
Q ss_pred EEEEcccCCCceEEe
Q psy7618 118 IFAYGQTGTGKTFTM 132 (560)
Q Consensus 118 i~aYG~TgSGKTyTm 132 (560)
|+..++||||||.+.
T Consensus 2 vvi~apTGsGKT~~~ 16 (358)
T TIGR01587 2 LVIEAPTGYGKTEAA 16 (358)
T ss_pred EEEEeCCCCCHHHHH
Confidence 578899999999763
No 420
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=30.39 E-value=35 Score=27.97 Aligned_cols=41 Identities=20% Similarity=0.251 Sum_probs=31.5
Q ss_pred cchhhHHHhHhhhhHHHHHHHHHhhhCCCCCcCCCCCchhhhhc
Q psy7618 404 TDIRLKECCEINLSLLAVNKVISSTVAGKTYIPYRDSLLTQLLQ 447 (560)
Q Consensus 404 ~g~r~~E~~~IN~SL~aL~~vI~al~~~~~~iPyRdSkLT~lLq 447 (560)
......|-..||.+|.+|..|+..|-.+..|+ .++|-.||+
T Consensus 21 ~e~~~~E~~~ins~LD~Lns~LD~LE~rnD~l---~~~L~~LLe 61 (83)
T PF03670_consen 21 DEFDEEEYAAINSMLDQLNSCLDHLEQRNDHL---HAQLQELLE 61 (83)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHhhhHH---HHHHHHHHH
Confidence 34457899999999999999999998877665 345555554
No 421
>PRK13721 conjugal transfer ATP-binding protein TraC; Provisional
Probab=30.39 E-value=17 Score=43.06 Aligned_cols=21 Identities=29% Similarity=0.395 Sum_probs=17.0
Q ss_pred CcEEEEEEcccCCCceEEecc
Q psy7618 114 YNVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 114 ~N~~i~aYG~TgSGKTyTm~G 134 (560)
-|...+..|.||||||++|..
T Consensus 448 ~N~N~~I~G~sGsGKS~l~k~ 468 (844)
T PRK13721 448 TNYNMAVCGTSGAGKTGLIQP 468 (844)
T ss_pred CcccEEEEcCCCCCHHHHHHH
Confidence 355678899999999999843
No 422
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=30.33 E-value=21 Score=33.59 Aligned_cols=15 Identities=33% Similarity=0.403 Sum_probs=12.4
Q ss_pred EEEEcccCCCceEEe
Q psy7618 118 IFAYGQTGTGKTFTM 132 (560)
Q Consensus 118 i~aYG~TgSGKTyTm 132 (560)
|..-|.+|||||+..
T Consensus 2 i~i~G~sgsGKttla 16 (179)
T cd02028 2 VGIAGPSGSGKTTFA 16 (179)
T ss_pred EEEECCCCCCHHHHH
Confidence 567799999999764
No 423
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=30.31 E-value=24 Score=36.08 Aligned_cols=14 Identities=43% Similarity=0.639 Sum_probs=12.2
Q ss_pred EEEEcccCCCceEE
Q psy7618 118 IFAYGQTGTGKTFT 131 (560)
Q Consensus 118 i~aYG~TgSGKTyT 131 (560)
|+..|+||||||.-
T Consensus 2 i~i~G~t~~GKs~l 15 (287)
T TIGR00174 2 IFIMGPTAVGKSQL 15 (287)
T ss_pred EEEECCCCCCHHHH
Confidence 68899999999864
No 424
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=30.22 E-value=19 Score=41.24 Aligned_cols=20 Identities=20% Similarity=0.308 Sum_probs=16.8
Q ss_pred cEEEEEEcccCCCceEEecc
Q psy7618 115 NVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 115 N~~i~aYG~TgSGKTyTm~G 134 (560)
.+-++..|..|||||.||..
T Consensus 14 ~~~~~V~Ag~GSGKT~~L~~ 33 (664)
T TIGR01074 14 TGPCLVLAGAGSGKTRVITN 33 (664)
T ss_pred CCCEEEEecCCCCHHHHHHH
Confidence 45678999999999999864
No 425
>KOG0924|consensus
Probab=30.10 E-value=26 Score=39.63 Aligned_cols=34 Identities=24% Similarity=0.433 Sum_probs=23.5
Q ss_pred hhhhhccchHHHHHHhcCCcEEEEEEcccCCCceEEe
Q psy7618 96 TEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 96 ~~vf~~~~~plv~~~l~G~N~~i~aYG~TgSGKTyTm 132 (560)
-.||. ++.-+-.++ +-|-.|+..|.||||||.-+
T Consensus 355 LPvf~--~R~~ll~~i-r~n~vvvivgETGSGKTTQl 388 (1042)
T KOG0924|consen 355 LPVFA--CRDQLLSVI-RENQVVVIVGETGSGKTTQL 388 (1042)
T ss_pred cchHH--HHHHHHHHH-hhCcEEEEEecCCCCchhhh
Confidence 34553 343333443 67888999999999999876
No 426
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=30.01 E-value=38 Score=33.90 Aligned_cols=17 Identities=29% Similarity=0.317 Sum_probs=14.8
Q ss_pred CcEEEEEEcccCCCceE
Q psy7618 114 YNVTIFAYGQTGTGKTF 130 (560)
Q Consensus 114 ~N~~i~aYG~TgSGKTy 130 (560)
...+++.+|++|+|||.
T Consensus 35 ~gs~~lI~G~pGtGKT~ 51 (259)
T TIGR03878 35 AYSVINITGVSDTGKSL 51 (259)
T ss_pred CCcEEEEEcCCCCCHHH
Confidence 45778999999999986
No 427
>PRK00279 adk adenylate kinase; Reviewed
Probab=29.97 E-value=25 Score=33.98 Aligned_cols=15 Identities=27% Similarity=0.503 Sum_probs=12.7
Q ss_pred EEEEEcccCCCceEE
Q psy7618 117 TIFAYGQTGTGKTFT 131 (560)
Q Consensus 117 ~i~aYG~TgSGKTyT 131 (560)
-|+.+|+.|||||..
T Consensus 2 ~I~v~G~pGsGKsT~ 16 (215)
T PRK00279 2 RLILLGPPGAGKGTQ 16 (215)
T ss_pred EEEEECCCCCCHHHH
Confidence 378899999999854
No 428
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=29.89 E-value=19 Score=42.34 Aligned_cols=20 Identities=25% Similarity=0.321 Sum_probs=15.8
Q ss_pred cEEEEEEcccCCCceEEecc
Q psy7618 115 NVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 115 N~~i~aYG~TgSGKTyTm~G 134 (560)
.+-.+..|+||||||++|.-
T Consensus 441 ~gn~~I~G~tGsGKS~l~~~ 460 (811)
T PRK13873 441 VGHTLVVGPTGAGKSVLLAL 460 (811)
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 34567899999999998743
No 429
>PRK13853 type IV secretion system protein VirB4; Provisional
Probab=29.88 E-value=16 Score=42.88 Aligned_cols=19 Identities=32% Similarity=0.361 Sum_probs=15.8
Q ss_pred cEEEEEEcccCCCceEEec
Q psy7618 115 NVTIFAYGQTGTGKTFTME 133 (560)
Q Consensus 115 N~~i~aYG~TgSGKTyTm~ 133 (560)
.+..+.+|+||||||.++.
T Consensus 426 ~g~~~I~G~tGsGKS~l~~ 444 (789)
T PRK13853 426 VGMTAIFGPIGRGKTTLMT 444 (789)
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4557899999999999863
No 430
>KOG0344|consensus
Probab=29.83 E-value=30 Score=38.30 Aligned_cols=25 Identities=28% Similarity=0.523 Sum_probs=17.9
Q ss_pred HHHHHhcCCcEEEEEEcccCCCceEEe
Q psy7618 106 MVNHMLHGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 106 lv~~~l~G~N~~i~aYG~TgSGKTyTm 132 (560)
++--++.+.+ ++|+++||||||+..
T Consensus 166 aipvfl~~r~--~lAcapTGsgKtlaf 190 (593)
T KOG0344|consen 166 AIPVFLEKRD--VLACAPTGSGKTLAF 190 (593)
T ss_pred hhhhhhcccc--eEEeccCCCcchhhh
Confidence 3444445444 699999999998775
No 431
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=29.78 E-value=17 Score=35.81 Aligned_cols=40 Identities=23% Similarity=0.238 Sum_probs=24.3
Q ss_pred EEEEEcccCCCceEEec------cCCC-----CcChHHHHHHHHHHHHhhh
Q psy7618 117 TIFAYGQTGTGKTFTME------GSQM-----ERGIMQNAFRQIFDFKQKE 156 (560)
Q Consensus 117 ~i~aYG~TgSGKTyTm~------G~~~-----~~Giipr~l~~lF~~~~~~ 156 (560)
+-..+|++|+|||.|+- |..- ++++=..++..||.-+...
T Consensus 34 ~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~~~l~ril~G~~~~ 84 (231)
T PF12774_consen 34 GGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDYQSLSRILKGLAQS 84 (231)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-HHHHHHHHHHHHHH
T ss_pred CCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccHHHHHHHHHHHhhc
Confidence 33569999999999984 3211 4455555666666554443
No 432
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=29.72 E-value=27 Score=32.44 Aligned_cols=15 Identities=27% Similarity=0.397 Sum_probs=13.2
Q ss_pred EEEEEcccCCCceEE
Q psy7618 117 TIFAYGQTGTGKTFT 131 (560)
Q Consensus 117 ~i~aYG~TgSGKTyT 131 (560)
.|+..|++|||||..
T Consensus 4 ~i~l~G~~gsGKst~ 18 (175)
T cd00227 4 IIILNGGSSAGKSSI 18 (175)
T ss_pred EEEEECCCCCCHHHH
Confidence 589999999999864
No 433
>PRK14528 adenylate kinase; Provisional
Probab=29.70 E-value=22 Score=33.62 Aligned_cols=15 Identities=33% Similarity=0.516 Sum_probs=12.7
Q ss_pred EEEEEcccCCCceEE
Q psy7618 117 TIFAYGQTGTGKTFT 131 (560)
Q Consensus 117 ~i~aYG~TgSGKTyT 131 (560)
-|+..|++|||||+.
T Consensus 3 ~i~i~G~pGsGKtt~ 17 (186)
T PRK14528 3 NIIFMGPPGAGKGTQ 17 (186)
T ss_pred EEEEECCCCCCHHHH
Confidence 378899999999765
No 434
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=29.61 E-value=23 Score=41.22 Aligned_cols=40 Identities=28% Similarity=0.475 Sum_probs=26.4
Q ss_pred EEEEEEcccCCCceEEecc------C-----------CCCcChHHHHHHHHHHHHhh
Q psy7618 116 VTIFAYGQTGTGKTFTMEG------S-----------QMERGIMQNAFRQIFDFKQK 155 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyTm~G------~-----------~~~~Giipr~l~~lF~~~~~ 155 (560)
-.|+-||++|+|||+.+-. . ....|-....++.+|+....
T Consensus 213 ~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~~g~~~~~l~~lf~~a~~ 269 (733)
T TIGR01243 213 KGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKYYGESEERLREIFKEAEE 269 (733)
T ss_pred ceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcccccHHHHHHHHHHHHHHh
Confidence 4588999999999976421 0 01234556667778876554
No 435
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=29.57 E-value=18 Score=42.77 Aligned_cols=19 Identities=32% Similarity=0.546 Sum_probs=16.4
Q ss_pred cEEEEEEcccCCCceEEec
Q psy7618 115 NVTIFAYGQTGTGKTFTME 133 (560)
Q Consensus 115 N~~i~aYG~TgSGKTyTm~ 133 (560)
++-.+..|+||||||+.|.
T Consensus 488 ~gh~~I~G~tGsGKS~l~~ 506 (852)
T PRK13891 488 LGHTFMFGPTGAGKSTHLG 506 (852)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 5667999999999999874
No 436
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=29.57 E-value=13 Score=38.23 Aligned_cols=27 Identities=30% Similarity=0.502 Sum_probs=19.0
Q ss_pred HHHHHhcC---CcEEEEEEcccCCCceEEe
Q psy7618 106 MVNHMLHG---YNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 106 lv~~~l~G---~N~~i~aYG~TgSGKTyTm 132 (560)
++-.+|.| .-..++.||..|+|||..+
T Consensus 64 ~lg~~L~~~~~~~~~~~l~G~g~nGKStl~ 93 (304)
T TIGR01613 64 VIGYSLTGNYTEQKLFFLYGNGGNGKSTFQ 93 (304)
T ss_pred HHhHHhcCCCCceEEEEEECCCCCcHHHHH
Confidence 34444544 4467999999999997543
No 437
>KOG0328|consensus
Probab=29.50 E-value=46 Score=33.83 Aligned_cols=26 Identities=42% Similarity=0.641 Sum_probs=21.0
Q ss_pred HHHHHhcCCcEEEEEEcccCCCceEEec
Q psy7618 106 MVNHMLHGYNVTIFAYGQTGTGKTFTME 133 (560)
Q Consensus 106 lv~~~l~G~N~~i~aYG~TgSGKTyTm~ 133 (560)
.|..++.|.++ +|-.|+|+|||-|..
T Consensus 57 Ai~~IlkGrdV--iaQaqSGTGKTa~~s 82 (400)
T KOG0328|consen 57 AIPQILKGRDV--IAQAQSGTGKTATFS 82 (400)
T ss_pred hhhhhhcccce--EEEecCCCCceEEEE
Confidence 45566789986 788999999998874
No 438
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=29.35 E-value=27 Score=29.75 Aligned_cols=15 Identities=20% Similarity=0.406 Sum_probs=12.2
Q ss_pred EEEEcccCCCceEEe
Q psy7618 118 IFAYGQTGTGKTFTM 132 (560)
Q Consensus 118 i~aYG~TgSGKTyTm 132 (560)
|.-.|.+|+|||.-+
T Consensus 2 V~iiG~~~~GKSTli 16 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLI 16 (116)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 567899999998753
No 439
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=29.32 E-value=19 Score=36.81 Aligned_cols=17 Identities=24% Similarity=0.587 Sum_probs=15.2
Q ss_pred EEEEEcccCCCceEEec
Q psy7618 117 TIFAYGQTGTGKTFTME 133 (560)
Q Consensus 117 ~i~aYG~TgSGKTyTm~ 133 (560)
.|+..|.+|||||..+-
T Consensus 8 ~i~i~G~~GsGKtt~~~ 24 (288)
T PRK05416 8 LVIVTGLSGAGKSVALR 24 (288)
T ss_pred EEEEECCCCCcHHHHHH
Confidence 68899999999999874
No 440
>PTZ00014 myosin-A; Provisional
Probab=29.27 E-value=32 Score=40.41 Aligned_cols=21 Identities=33% Similarity=0.403 Sum_probs=19.2
Q ss_pred cCCcEEEEEEcccCCCceEEe
Q psy7618 112 HGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 112 ~G~N~~i~aYG~TgSGKTyTm 132 (560)
.+.|-||+.-|.+|||||.+.
T Consensus 180 ~~~~QsIiiSGESGAGKTe~t 200 (821)
T PTZ00014 180 VKKSQTIIVSGESGAGKTEAT 200 (821)
T ss_pred cCCCceEEEEcCCCCCchHHH
Confidence 689999999999999999764
No 441
>PRK13880 conjugal transfer coupling protein TraG; Provisional
Probab=29.22 E-value=32 Score=39.34 Aligned_cols=19 Identities=21% Similarity=0.392 Sum_probs=16.1
Q ss_pred cEEEEEEcccCCCceEEec
Q psy7618 115 NVTIFAYGQTGTGKTFTME 133 (560)
Q Consensus 115 N~~i~aYG~TgSGKTyTm~ 133 (560)
+.-++++|+||||||..+.
T Consensus 175 ~~HvlviapTgSGKgvg~V 193 (636)
T PRK13880 175 PEHVLTYAPTRSGKGVGLV 193 (636)
T ss_pred CceEEEEecCCCCCceEEE
Confidence 4458999999999999873
No 442
>KOG2655|consensus
Probab=29.22 E-value=31 Score=36.35 Aligned_cols=23 Identities=26% Similarity=0.606 Sum_probs=19.8
Q ss_pred HHhcCCcEEEEEEcccCCCceEE
Q psy7618 109 HMLHGYNVTIFAYGQTGTGKTFT 131 (560)
Q Consensus 109 ~~l~G~N~~i~aYG~TgSGKTyT 131 (560)
.+=.|+.-+|++.|++|+|||.-
T Consensus 15 ~~KkG~~ftlmvvG~sGlGKsTf 37 (366)
T KOG2655|consen 15 SVKKGFDFTLMVVGESGLGKSTF 37 (366)
T ss_pred HHhcCCceEEEEecCCCccHHHH
Confidence 34489999999999999999863
No 443
>PRK09401 reverse gyrase; Reviewed
Probab=29.18 E-value=37 Score=41.71 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=17.6
Q ss_pred HHHHHhcCCcEEEEEEcccCCCceE
Q psy7618 106 MVNHMLHGYNVTIFAYGQTGTGKTF 130 (560)
Q Consensus 106 lv~~~l~G~N~~i~aYG~TgSGKTy 130 (560)
.+..++.|.|..+. .+||||||.
T Consensus 88 ~i~~il~g~dv~i~--ApTGsGKT~ 110 (1176)
T PRK09401 88 WAKRLLLGESFAII--APTGVGKTT 110 (1176)
T ss_pred HHHHHHCCCcEEEE--cCCCCCHHH
Confidence 45567899877554 599999994
No 444
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=29.10 E-value=21 Score=39.86 Aligned_cols=44 Identities=25% Similarity=0.525 Sum_probs=28.2
Q ss_pred eeeCCccccCCCcchhhhhccchHHHHHHhcCCcEEEEEEcccCCCceEE
Q psy7618 82 RFTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFT 131 (560)
Q Consensus 82 ~F~FD~VF~~~a~Q~~vf~~~~~plv~~~l~G~N~~i~aYG~TgSGKTyT 131 (560)
.|.||.+++.+..-..+. ..+.. +...+..|+-+|.+||||++.
T Consensus 208 ~~~f~~iiG~S~~m~~~~-----~~i~~-~A~~~~pVLI~GE~GTGKe~l 251 (526)
T TIGR02329 208 RYRLDDLLGASAPMEQVR-----ALVRL-YARSDATVLILGESGTGKELV 251 (526)
T ss_pred ccchhheeeCCHHHHHHH-----HHHHH-HhCCCCcEEEECCCCcCHHHH
Confidence 477887776544222222 22322 356678999999999999753
No 445
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=29.02 E-value=23 Score=40.50 Aligned_cols=19 Identities=32% Similarity=0.294 Sum_probs=15.7
Q ss_pred CcEEEEEEcccCCCceEEe
Q psy7618 114 YNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 114 ~N~~i~aYG~TgSGKTyTm 132 (560)
.++-++..|.||||||.++
T Consensus 175 ~~~H~lv~G~TGsGKT~l~ 193 (634)
T TIGR03743 175 RVGHTLVLGTTGVGKTRLA 193 (634)
T ss_pred CCCcEEEECCCCCCHHHHH
Confidence 3556789999999999776
No 446
>PF12444 Sox_N: Sox developmental protein N terminal ; InterPro: IPR022151 This domain family is found in eukaryotes, and is typically between 69 and 88 amino acids in length. The family is found in association with PF00505 from PFAM. There are two conserved sequence motifs: YDW and PVR. This family contains Sox8, Sox9 and Sox10 proteins which have structural similarity. Sox proteins are involved in developmental processes.
Probab=28.99 E-value=39 Score=27.77 Aligned_cols=27 Identities=22% Similarity=0.523 Sum_probs=23.2
Q ss_pred cchhhhhccchHHHHHHhcCCcEEEEE
Q psy7618 94 TQTEIYENSVRPMVNHMLHGYNVTIFA 120 (560)
Q Consensus 94 ~Q~~vf~~~~~plv~~~l~G~N~~i~a 120 (560)
...+-|...++..|-.||+||+.++..
T Consensus 53 ~~d~~fp~~IrdAVsqVLkGYDWtLVP 79 (84)
T PF12444_consen 53 DEDDRFPVCIRDAVSQVLKGYDWTLVP 79 (84)
T ss_pred cccccccHHHHHHHHHHhccCCceeee
Confidence 346788888999999999999999864
No 447
>PRK13876 conjugal transfer coupling protein TraG; Provisional
Probab=28.94 E-value=36 Score=39.03 Aligned_cols=19 Identities=16% Similarity=0.307 Sum_probs=16.7
Q ss_pred CcEEEEEEcccCCCceEEe
Q psy7618 114 YNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 114 ~N~~i~aYG~TgSGKTyTm 132 (560)
-+.-++++|+||||||-.+
T Consensus 143 g~~hvLviApTrSGKgvg~ 161 (663)
T PRK13876 143 GPEHVLCFAPTRSGKGVGL 161 (663)
T ss_pred CCceEEEEecCCCCcceeE
Confidence 3667999999999999887
No 448
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=28.63 E-value=27 Score=32.62 Aligned_cols=14 Identities=29% Similarity=0.401 Sum_probs=11.8
Q ss_pred EEEEcccCCCceEE
Q psy7618 118 IFAYGQTGTGKTFT 131 (560)
Q Consensus 118 i~aYG~TgSGKTyT 131 (560)
+|..|.+|||||.-
T Consensus 2 ~li~G~~~sGKS~~ 15 (169)
T cd00544 2 ILVTGGARSGKSRF 15 (169)
T ss_pred EEEECCCCCCHHHH
Confidence 57899999999853
No 449
>PLN02165 adenylate isopentenyltransferase
Probab=28.50 E-value=28 Score=36.33 Aligned_cols=16 Identities=31% Similarity=0.513 Sum_probs=13.4
Q ss_pred EEEEEcccCCCceEEe
Q psy7618 117 TIFAYGQTGTGKTFTM 132 (560)
Q Consensus 117 ~i~aYG~TgSGKTyTm 132 (560)
.|+-.|+||||||...
T Consensus 45 iivIiGPTGSGKStLA 60 (334)
T PLN02165 45 VVVIMGATGSGKSRLS 60 (334)
T ss_pred EEEEECCCCCcHHHHH
Confidence 5778999999999753
No 450
>PRK05480 uridine/cytidine kinase; Provisional
Probab=28.50 E-value=30 Score=33.13 Aligned_cols=19 Identities=32% Similarity=0.350 Sum_probs=14.8
Q ss_pred CcEEEEEEcccCCCceEEe
Q psy7618 114 YNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 114 ~N~~i~aYG~TgSGKTyTm 132 (560)
..-.|.--|.+|||||+..
T Consensus 5 ~~~iI~I~G~sGsGKTTl~ 23 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVA 23 (209)
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 3446788899999999654
No 451
>PRK01184 hypothetical protein; Provisional
Probab=28.41 E-value=25 Score=32.80 Aligned_cols=15 Identities=33% Similarity=0.304 Sum_probs=12.8
Q ss_pred EEEEEcccCCCceEE
Q psy7618 117 TIFAYGQTGTGKTFT 131 (560)
Q Consensus 117 ~i~aYG~TgSGKTyT 131 (560)
.|+..|+.|||||+.
T Consensus 3 ~i~l~G~~GsGKsT~ 17 (184)
T PRK01184 3 IIGVVGMPGSGKGEF 17 (184)
T ss_pred EEEEECCCCCCHHHH
Confidence 478899999999983
No 452
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=28.38 E-value=23 Score=35.05 Aligned_cols=14 Identities=36% Similarity=0.489 Sum_probs=12.5
Q ss_pred EEEEcccCCCceEE
Q psy7618 118 IFAYGQTGTGKTFT 131 (560)
Q Consensus 118 i~aYG~TgSGKTyT 131 (560)
|+-.|..|||||+.
T Consensus 2 Ivl~G~pGSGKST~ 15 (249)
T TIGR03574 2 IILTGLPGVGKSTF 15 (249)
T ss_pred EEEEcCCCCCHHHH
Confidence 78899999999975
No 453
>TIGR02759 TraD_Ftype type IV conjugative transfer system coupling protein TraD. The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM).
Probab=28.33 E-value=19 Score=40.51 Aligned_cols=14 Identities=43% Similarity=0.745 Sum_probs=12.4
Q ss_pred EEEEEcccCCCceE
Q psy7618 117 TIFAYGQTGTGKTF 130 (560)
Q Consensus 117 ~i~aYG~TgSGKTy 130 (560)
-++.+|.||||||.
T Consensus 178 h~li~G~tGsGKs~ 191 (566)
T TIGR02759 178 HILIHGTTGSGKSV 191 (566)
T ss_pred ceEEEcCCCCCHHH
Confidence 47899999999994
No 454
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=28.32 E-value=30 Score=35.94 Aligned_cols=20 Identities=35% Similarity=0.433 Sum_probs=17.4
Q ss_pred CCcEEEEEEcccCCCceEEe
Q psy7618 113 GYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 113 G~N~~i~aYG~TgSGKTyTm 132 (560)
+.-..|+-.|..|+|||+|+
T Consensus 137 ~~p~Vil~vGVNG~GKTTTI 156 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTI 156 (340)
T ss_pred CCcEEEEEEecCCCchHhHH
Confidence 45678999999999999996
No 455
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=28.32 E-value=24 Score=33.18 Aligned_cols=20 Identities=30% Similarity=0.287 Sum_probs=18.2
Q ss_pred cEEEEEEcccCCCceEEecc
Q psy7618 115 NVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 115 N~~i~aYG~TgSGKTyTm~G 134 (560)
.+.|..|+.+|.|||++-+|
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g 24 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFG 24 (173)
T ss_pred ccEEEEECCCCCChHHHHHH
Confidence 47899999999999999988
No 456
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=28.27 E-value=25 Score=32.62 Aligned_cols=19 Identities=37% Similarity=0.415 Sum_probs=17.5
Q ss_pred EEEEEEcccCCCceEEecc
Q psy7618 116 VTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyTm~G 134 (560)
+.|..|+.+|.|||+.-+|
T Consensus 3 G~i~vy~g~G~Gkt~~a~g 21 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALG 21 (159)
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 5789999999999999888
No 457
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=28.22 E-value=19 Score=33.07 Aligned_cols=17 Identities=29% Similarity=0.405 Sum_probs=12.7
Q ss_pred EEEEcccCCCceEEecc
Q psy7618 118 IFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 118 i~aYG~TgSGKTyTm~G 134 (560)
|...|.+|||||+.+.-
T Consensus 2 i~i~G~~gsGKTtl~~~ 18 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIER 18 (155)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 34569999999987543
No 458
>PRK05541 adenylylsulfate kinase; Provisional
Probab=28.20 E-value=26 Score=32.52 Aligned_cols=16 Identities=38% Similarity=0.563 Sum_probs=13.3
Q ss_pred EEEEEEcccCCCceEE
Q psy7618 116 VTIFAYGQTGTGKTFT 131 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyT 131 (560)
..|+-.|.+|||||..
T Consensus 8 ~~I~i~G~~GsGKst~ 23 (176)
T PRK05541 8 YVIWITGLAGSGKTTI 23 (176)
T ss_pred CEEEEEcCCCCCHHHH
Confidence 3678899999999764
No 459
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=28.09 E-value=32 Score=37.03 Aligned_cols=29 Identities=28% Similarity=0.440 Sum_probs=24.8
Q ss_pred hHHHHHHhcCCcEEEEEEcccCCCceEEe
Q psy7618 104 RPMVNHMLHGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 104 ~plv~~~l~G~N~~i~aYG~TgSGKTyTm 132 (560)
..-++.+-+|....-|..|.-||||||.+
T Consensus 38 ~~~l~~v~~G~s~~kfi~G~YGsGKTf~l 66 (416)
T PF10923_consen 38 DRDLDRVADGGSSFKFIRGEYGSGKTFFL 66 (416)
T ss_pred HHHHHHHhCCCCeEEEEEeCCCCcHHHHH
Confidence 33467788999999999999999999975
No 460
>KOG1655|consensus
Probab=28.00 E-value=2.9e+02 Score=26.53 Aligned_cols=72 Identities=22% Similarity=0.380 Sum_probs=42.6
Q ss_pred eCCCcccHHHHHHHH-----HHHHHhcccccccccccccchhhhcHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q psy7618 462 IGPAASTYKETLVTL-----EYANRAKKIKNAPNINFYREDRCHNEEKMREKYKKALEDLAQCKMDYEMAEKRADTLK 534 (560)
Q Consensus 462 vsP~~~~~~ETl~TL-----~fa~rak~Ikn~p~~n~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~ 534 (560)
|.-....+++-++-| +|=...++++..|..|...+ +..+-++..+.|+.+...|.++.-..+.|.--++.||
T Consensus 24 v~~r~dSve~KIskLDaeL~k~~~Qi~k~R~gpaq~~~Kq-rAlrVLkQKK~yE~q~d~L~~QsfNMeQa~~t~e~LK 100 (218)
T KOG1655|consen 24 VNKRSDSVEKKISKLDAELCKYKDQIKKTRPGPAQNALKQ-RALRVLKQKKMYENQKDSLDQQSFNMEQANFTAESLK 100 (218)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHH-HHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 333344555555544 57778888888898886543 3445555566667777667665555544443333333
No 461
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=28.00 E-value=14 Score=34.14 Aligned_cols=13 Identities=31% Similarity=0.590 Sum_probs=10.9
Q ss_pred EcccCCCceEEec
Q psy7618 121 YGQTGTGKTFTME 133 (560)
Q Consensus 121 YG~TgSGKTyTm~ 133 (560)
.|.+|||||+.+-
T Consensus 1 ~G~sGsGKSTla~ 13 (163)
T PRK11545 1 MGVSGSGKSAVAS 13 (163)
T ss_pred CCCCCCcHHHHHH
Confidence 4999999998764
No 462
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=27.96 E-value=29 Score=38.45 Aligned_cols=36 Identities=19% Similarity=0.203 Sum_probs=23.4
Q ss_pred CcchhhhhccchHHHHHHhcCC-cEEEEEEcccCCCceEEe
Q psy7618 93 ATQTEIYENSVRPMVNHMLHGY-NVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 93 a~Q~~vf~~~~~plv~~~l~G~-N~~i~aYG~TgSGKTyTm 132 (560)
..|+.+... +...+..|. ...++-||+.|+|||.+.
T Consensus 24 iGq~~vv~~----L~~ai~~~ri~~a~Lf~Gp~G~GKTT~A 60 (507)
T PRK06645 24 QGQEVLVKV----LSYTILNDRLAGGYLLTGIRGVGKTTSA 60 (507)
T ss_pred cCcHHHHHH----HHHHHHcCCCCceEEEECCCCCCHHHHH
Confidence 345555442 333344554 357899999999999875
No 463
>KOG0736|consensus
Probab=27.90 E-value=28 Score=40.04 Aligned_cols=34 Identities=38% Similarity=0.667 Sum_probs=21.6
Q ss_pred hhhhhccchHHHH-HHh-cCC--cEEEEEEcccCCCce
Q psy7618 96 TEIYENSVRPMVN-HML-HGY--NVTIFAYGQTGTGKT 129 (560)
Q Consensus 96 ~~vf~~~~~plv~-~~l-~G~--N~~i~aYG~TgSGKT 129 (560)
.+|-+.+-.|+-. ++| .|- -+.|+-||+.|+|||
T Consensus 682 ~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKT 719 (953)
T KOG0736|consen 682 TEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKT 719 (953)
T ss_pred HHHHHHhcCcccChhhhhccccccceeEEECCCCCchH
Confidence 3455555555442 222 453 467999999999998
No 464
>KOG0987|consensus
Probab=27.89 E-value=39 Score=37.86 Aligned_cols=36 Identities=28% Similarity=0.605 Sum_probs=26.3
Q ss_pred CCcchhhhhccchHHHHHHhcCCcEEEEEEcccCCCceEEe
Q psy7618 92 QATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 92 ~a~Q~~vf~~~~~plv~~~l~G~N~~i~aYG~TgSGKTyTm 132 (560)
+..|+.||+. ++..+.+..-..+| ||.-|+||||-.
T Consensus 119 ~~eqk~v~d~----~~~~v~~~~g~~ff-~g~~gtgKt~l~ 154 (540)
T KOG0987|consen 119 TPEQKRVYDA----ILEAVENNLGGVFF-YGFGGTGKTYLL 154 (540)
T ss_pred CHHHHHHHHH----HHHHHhccccceee-eccCCccceeeH
Confidence 3568888873 34455566666777 999999999964
No 465
>PRK02496 adk adenylate kinase; Provisional
Probab=27.89 E-value=28 Score=32.50 Aligned_cols=14 Identities=29% Similarity=0.517 Sum_probs=12.0
Q ss_pred EEEEcccCCCceEE
Q psy7618 118 IFAYGQTGTGKTFT 131 (560)
Q Consensus 118 i~aYG~TgSGKTyT 131 (560)
|+..|+.|||||..
T Consensus 4 i~i~G~pGsGKst~ 17 (184)
T PRK02496 4 LIFLGPPGAGKGTQ 17 (184)
T ss_pred EEEECCCCCCHHHH
Confidence 67799999999865
No 466
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=27.69 E-value=28 Score=32.50 Aligned_cols=15 Identities=27% Similarity=0.346 Sum_probs=12.7
Q ss_pred EEEEEcccCCCceEE
Q psy7618 117 TIFAYGQTGTGKTFT 131 (560)
Q Consensus 117 ~i~aYG~TgSGKTyT 131 (560)
.|+..|.+|||||.-
T Consensus 3 ~ili~G~~~sGKS~~ 17 (170)
T PRK05800 3 LILVTGGARSGKSRF 17 (170)
T ss_pred EEEEECCCCccHHHH
Confidence 478999999999853
No 467
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=27.59 E-value=36 Score=40.13 Aligned_cols=25 Identities=16% Similarity=0.310 Sum_probs=17.8
Q ss_pred HHHHhcCCcEEEEEEcccCCCceEEe
Q psy7618 107 VNHMLHGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 107 v~~~l~G~N~~i~aYG~TgSGKTyTm 132 (560)
+-..+.. |..++..|+||||||..+
T Consensus 10 i~~~l~~-~~~vIi~a~TGSGKTT~v 34 (819)
T TIGR01970 10 LRDALAA-HPQVVLEAPPGAGKSTAV 34 (819)
T ss_pred HHHHHHc-CCcEEEECCCCCCHHHHH
Confidence 3344443 456789999999999864
No 468
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=27.56 E-value=32 Score=39.80 Aligned_cols=55 Identities=18% Similarity=0.179 Sum_probs=32.6
Q ss_pred CCcchhhhhccchHHHHHHhcCCcEEEEEEcccCCCceEEeccC-------C-------CCcChHHHHHHHHHHH
Q psy7618 92 QATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEGS-------Q-------MERGIMQNAFRQIFDF 152 (560)
Q Consensus 92 ~a~Q~~vf~~~~~plv~~~l~G~N~~i~aYG~TgSGKTyTm~G~-------~-------~~~Giipr~l~~lF~~ 152 (560)
+..|...++. +..++ |.....+-+|.||||||--.+.- . .+-++.|++++.+-..
T Consensus 200 n~~Q~~a~~~----i~~~~--~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~r 268 (730)
T COG1198 200 NQEQQAAVEA----ILSSL--GGFAPFLLDGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKAR 268 (730)
T ss_pred CHHHHHHHHH----HHHhc--ccccceeEeCCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHH
Confidence 3455555554 23333 44556778999999999554431 0 1556777776655443
No 469
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=27.56 E-value=31 Score=32.13 Aligned_cols=17 Identities=35% Similarity=0.495 Sum_probs=14.4
Q ss_pred EEEEEEcccCCCceEEe
Q psy7618 116 VTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyTm 132 (560)
..|+..|++|||||...
T Consensus 5 ~~I~liG~~GaGKStl~ 21 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIG 21 (172)
T ss_pred CEEEEECCCCcCHHHHH
Confidence 36899999999999764
No 470
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=27.30 E-value=28 Score=39.66 Aligned_cols=32 Identities=31% Similarity=0.361 Sum_probs=21.6
Q ss_pred chhhhhccchHHHHHHhcCCcEEEEEEcccCCCceEEe
Q psy7618 95 QTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 95 Q~~vf~~~~~plv~~~l~G~N~~i~aYG~TgSGKTyTm 132 (560)
|.++++.+. .++.+ +..+++-.+||+|||+..
T Consensus 2 Q~~~~~~i~-----~al~~-~~~lliEA~TGtGKTlAY 33 (636)
T TIGR03117 2 QALFYLNCL-----TSLRQ-KRIGMLEASTGVGKTLAM 33 (636)
T ss_pred HHHHHHHHH-----HHHhc-CCeEEEEcCCCCcHHHHH
Confidence 677776532 22222 355889999999999765
No 471
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=27.28 E-value=36 Score=34.47 Aligned_cols=30 Identities=10% Similarity=0.167 Sum_probs=20.0
Q ss_pred chHHHHHHhc-CCcEEEEEEcccCCCceEEe
Q psy7618 103 VRPMVNHMLH-GYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 103 ~~plv~~~l~-G~N~~i~aYG~TgSGKTyTm 132 (560)
...++..++. |.-..+.-+|++|||||..+
T Consensus 98 ~~~~l~~l~~~~~~~~~~i~g~~g~GKttl~ 128 (270)
T TIGR02858 98 ADKLLPYLVRNNRVLNTLIISPPQCGKTTLL 128 (270)
T ss_pred HHHHHHHHHhCCCeeEEEEEcCCCCCHHHHH
Confidence 3344455553 32246788999999999876
No 472
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=27.26 E-value=26 Score=40.76 Aligned_cols=17 Identities=35% Similarity=0.669 Sum_probs=13.9
Q ss_pred EEEEEEcccCCCceEEe
Q psy7618 116 VTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyTm 132 (560)
..|+-||++|+|||+..
T Consensus 488 ~giLL~GppGtGKT~la 504 (733)
T TIGR01243 488 KGVLLFGPPGTGKTLLA 504 (733)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 34778999999999764
No 473
>KOG0922|consensus
Probab=27.20 E-value=34 Score=38.56 Aligned_cols=19 Identities=32% Similarity=0.583 Sum_probs=16.0
Q ss_pred CcEEEEEEcccCCCceEEe
Q psy7618 114 YNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 114 ~N~~i~aYG~TgSGKTyTm 132 (560)
.|-.++.-|.||||||.-+
T Consensus 65 ~nqvlIviGeTGsGKSTQi 83 (674)
T KOG0922|consen 65 DNQVLIVIGETGSGKSTQI 83 (674)
T ss_pred HCCEEEEEcCCCCCccccH
Confidence 4667788999999999876
No 474
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=27.10 E-value=31 Score=33.24 Aligned_cols=17 Identities=24% Similarity=0.319 Sum_probs=13.7
Q ss_pred EEEEEEcccCCCceEEe
Q psy7618 116 VTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyTm 132 (560)
...+-+|++|||||-.+
T Consensus 25 ~~~~i~G~NGsGKS~il 41 (220)
T PF02463_consen 25 GLNVIVGPNGSGKSNIL 41 (220)
T ss_dssp SEEEEEESTTSSHHHHH
T ss_pred CCEEEEcCCCCCHHHHH
Confidence 35678999999999654
No 475
>TIGR03783 Bac_Flav_CT_G Bacteroides conjugation system ATPase, TraG family. Members of this family include the predicted ATPase, TraG, encoded by transfer region genes of conjugative transposons of Bacteroides, such as CTnDOT, found on the main chromosome. Members also include TraG homologs borne on plasmids in Bacteroides. The protein family is related to the conjugative transfer system ATPase VirB4.
Probab=27.07 E-value=20 Score=42.28 Aligned_cols=21 Identities=33% Similarity=0.564 Sum_probs=17.7
Q ss_pred CcEEEEEEcccCCCceEEecc
Q psy7618 114 YNVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 114 ~N~~i~aYG~TgSGKTyTm~G 134 (560)
-|...+..|+||||||..|.-
T Consensus 437 ~n~N~~I~G~sGsGKS~l~~~ 457 (829)
T TIGR03783 437 TNRNKFILGPSGSGKSFFTNH 457 (829)
T ss_pred ccCceEEECCCCCCHHHHHHH
Confidence 377789999999999998744
No 476
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=27.02 E-value=28 Score=34.19 Aligned_cols=17 Identities=29% Similarity=0.431 Sum_probs=14.8
Q ss_pred cEEEEEEcccCCCceEE
Q psy7618 115 NVTIFAYGQTGTGKTFT 131 (560)
Q Consensus 115 N~~i~aYG~TgSGKTyT 131 (560)
...++.+|++|+|||..
T Consensus 24 g~~~~i~G~~G~GKTtl 40 (230)
T PRK08533 24 GSLILIEGDESTGKSIL 40 (230)
T ss_pred CcEEEEECCCCCCHHHH
Confidence 34789999999999986
No 477
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=26.96 E-value=25 Score=35.13 Aligned_cols=39 Identities=31% Similarity=0.385 Sum_probs=24.0
Q ss_pred CCCcchhhhhccchHHHHHHhcCCcEEEEEEcccCCCceEEe
Q psy7618 91 MQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 91 ~~a~Q~~vf~~~~~plv~~~l~G~N~~i~aYG~TgSGKTyTm 132 (560)
++++|....+.. ..+-+ ..-....|+..|.||+|||.++
T Consensus 10 ~~~~~~~~~~~~-~~~~~--~~~~~~~IllvG~tGvGKSSli 48 (249)
T cd01853 10 PDAAQTKALELE-AKGKE--ELDFSLTILVLGKTGVGKSSTI 48 (249)
T ss_pred cHHHHHHHHHHH-HHhhh--hccCCeEEEEECCCCCcHHHHH
Confidence 455555554432 12222 2345567889999999999874
No 478
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=26.85 E-value=22 Score=34.82 Aligned_cols=16 Identities=25% Similarity=0.424 Sum_probs=13.5
Q ss_pred EEEEEcccCCCceEEe
Q psy7618 117 TIFAYGQTGTGKTFTM 132 (560)
Q Consensus 117 ~i~aYG~TgSGKTyTm 132 (560)
...-.|+.|||||..|
T Consensus 25 ~~~i~GpNGsGKStll 40 (243)
T cd03272 25 HNVVVGRNGSGKSNFF 40 (243)
T ss_pred cEEEECCCCCCHHHHH
Confidence 4557899999999886
No 479
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=26.72 E-value=28 Score=33.09 Aligned_cols=15 Identities=27% Similarity=0.638 Sum_probs=10.8
Q ss_pred EEEEcccCCCceEEe
Q psy7618 118 IFAYGQTGTGKTFTM 132 (560)
Q Consensus 118 i~aYG~TgSGKTyTm 132 (560)
.+-+|..||||||.+
T Consensus 3 ~~~~G~pGsGKS~~a 17 (193)
T PF05707_consen 3 YLITGKPGSGKSYYA 17 (193)
T ss_dssp EEEE--TTSSHHHHH
T ss_pred EEEEcCCCCcHhHHH
Confidence 567899999999874
No 480
>KOG2035|consensus
Probab=26.68 E-value=28 Score=35.31 Aligned_cols=32 Identities=19% Similarity=0.401 Sum_probs=20.7
Q ss_pred chHHHHHHhc-CCcEEEEEEcccCCCceEEecc
Q psy7618 103 VRPMVNHMLH-GYNVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 103 ~~plv~~~l~-G~N~~i~aYG~TgSGKTyTm~G 134 (560)
..+.+.++.. |-=--++.||++|+||-..++-
T Consensus 21 ~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimc 53 (351)
T KOG2035|consen 21 LANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMC 53 (351)
T ss_pred HHHHHHHhcccCCCCeEEEECCCCCCchhhHHH
Confidence 3444444443 4234578999999999776543
No 481
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=26.65 E-value=29 Score=32.59 Aligned_cols=16 Identities=25% Similarity=0.507 Sum_probs=13.5
Q ss_pred EEEEEcccCCCceEEe
Q psy7618 117 TIFAYGQTGTGKTFTM 132 (560)
Q Consensus 117 ~i~aYG~TgSGKTyTm 132 (560)
.+...|++|||||+.+
T Consensus 5 ~i~l~G~sGsGKSTl~ 20 (176)
T PRK09825 5 SYILMGVSGSGKSLIG 20 (176)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5678999999999864
No 482
>PF00519 PPV_E1_C: Papillomavirus helicase; InterPro: IPR001177 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species. The helicase E1 protein is an ATP-dependent DNA helicase required for initiation of viral DNA replication []. It forms a complex with the viral E2 protein, which is a site-specific DNA-binding transcriptional activator. The E1-E2 complex binds to the replication origin which contains binding sites for both proteins []. The E1 protein is a 70 kDa polypeptide with a central DNA-binding domain and a C-terminal ATPase/helicase domain. It binds specific 18 bp DNA sequences at the origin of replication, melts the DNA duplex and functions as a 3' to 5' helicase []. In addition to E2 it also interacts with DNA polymerase alpha and replication protein A to effect DNA replication. The DNA-binding domain forms a five-stranded antiparallel beta sheet bordered by four loosely packed alpha helices on one side and two tightly packed helices on the other []. Two structural modules within this domain, an extended loop and a helix, contain conserved residues and are critical for DNA binding. In solution E1 is a monomer, but binds DNA as a dimer. Recruitment of more E1 subunits to the complex leads to melting of the origin and ultimately to the formation of an E1 hexamer with helicase activity []. The entry represents the C-terminal region of E1, containing both the DNA-binding and ATPase/helical domains.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1TUE_K 1R9W_A 2V9P_B 2GXA_I 1KSX_J 1KSY_A 1F08_B.
Probab=26.60 E-value=35 Score=36.35 Aligned_cols=27 Identities=26% Similarity=0.487 Sum_probs=20.8
Q ss_pred HHHHhcC--CcEEEEEEcccCCCceEEec
Q psy7618 107 VNHMLHG--YNVTIFAYGQTGTGKTFTME 133 (560)
Q Consensus 107 v~~~l~G--~N~~i~aYG~TgSGKTyTm~ 133 (560)
+..+|.| ...||.-||+.+|||++-.+
T Consensus 252 lk~~Lkg~PKKnClvi~GPPdTGKS~F~~ 280 (432)
T PF00519_consen 252 LKQFLKGIPKKNCLVIYGPPDTGKSMFCM 280 (432)
T ss_dssp HHHHHHTBTTSSEEEEESSCCCSHHHHHH
T ss_pred HHHHHhCCCcccEEEEECCCCCchhHHHH
Confidence 4556667 56789999999999987543
No 483
>PTZ00301 uridine kinase; Provisional
Probab=26.55 E-value=28 Score=33.76 Aligned_cols=14 Identities=36% Similarity=0.460 Sum_probs=11.5
Q ss_pred EEEEcccCCCceEE
Q psy7618 118 IFAYGQTGTGKTFT 131 (560)
Q Consensus 118 i~aYG~TgSGKTyT 131 (560)
|---|++|||||+.
T Consensus 6 IgIaG~SgSGKTTl 19 (210)
T PTZ00301 6 IGISGASGSGKSSL 19 (210)
T ss_pred EEEECCCcCCHHHH
Confidence 55679999999975
No 484
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=26.50 E-value=41 Score=39.93 Aligned_cols=18 Identities=33% Similarity=0.335 Sum_probs=14.9
Q ss_pred cEEEEEEcccCCCceEEe
Q psy7618 115 NVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 115 N~~i~aYG~TgSGKTyTm 132 (560)
.+.++-+|+||+|||++.
T Consensus 595 ~~~~Lf~Gp~GvGKt~lA 612 (852)
T TIGR03346 595 IGSFLFLGPTGVGKTELA 612 (852)
T ss_pred CeEEEEEcCCCCCHHHHH
Confidence 367888999999999764
No 485
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=26.49 E-value=41 Score=38.43 Aligned_cols=42 Identities=21% Similarity=0.365 Sum_probs=30.1
Q ss_pred eeCCccccCCCcchhhhhccchHHHHHHhcCCcEEEEEEcccCCCceEEe
Q psy7618 83 FTFDAVYGMQATQTEIYENSVRPMVNHMLHGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 83 F~FD~VF~~~a~Q~~vf~~~~~plv~~~l~G~N~~i~aYG~TgSGKTyTm 132 (560)
|.|..|.+ |+.+- ..++-.++++..+.|+-+|..|+|||...
T Consensus 1 ~pf~~ivG----q~~~~----~al~~~av~~~~g~vli~G~~GtgKs~la 42 (633)
T TIGR02442 1 FPFTAIVG----QEDLK----LALLLNAVDPRIGGVLIRGEKGTAKSTAA 42 (633)
T ss_pred CCcchhcC----hHHHH----HHHHHHhhCCCCCeEEEEcCCCCcHHHHH
Confidence 55666665 44443 45666677776677999999999998654
No 486
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=26.40 E-value=29 Score=35.97 Aligned_cols=45 Identities=22% Similarity=0.394 Sum_probs=29.9
Q ss_pred ccccCCCcchhhhhccchHHHHHHh-cCCcEEEEEEcccCCCceEEec
Q psy7618 87 AVYGMQATQTEIYENSVRPMVNHML-HGYNVTIFAYGQTGTGKTFTME 133 (560)
Q Consensus 87 ~VF~~~a~Q~~vf~~~~~plv~~~l-~G~N~~i~aYG~TgSGKTyTm~ 133 (560)
.|=+.+.++.+-=.+....+++.++ +|+. .|.||.+|.|||+.++
T Consensus 62 ~v~a~~~~~~eWdrs~~P~lId~~fr~g~~--~~~~gdsg~GKttllL 107 (402)
T COG3598 62 QVQAEAMRLSEWDRSNSPQLIDEFFRKGYV--SILYGDSGVGKTTLLL 107 (402)
T ss_pred EehhhhcChhhcCcccChhhhhHHhhcCee--EEEecCCcccHhHHHH
Confidence 5555555555443445666666655 5654 4789999999998864
No 487
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=26.31 E-value=23 Score=37.42 Aligned_cols=18 Identities=33% Similarity=0.748 Sum_probs=15.6
Q ss_pred EEEEEEcccCCCceEEec
Q psy7618 116 VTIFAYGQTGTGKTFTME 133 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyTm~ 133 (560)
-.|.-||..|.|||+-|-
T Consensus 63 ~GlYl~G~vG~GKT~Lmd 80 (362)
T PF03969_consen 63 KGLYLWGPVGRGKTMLMD 80 (362)
T ss_pred ceEEEECCCCCchhHHHH
Confidence 458999999999999873
No 488
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=26.28 E-value=25 Score=37.00 Aligned_cols=31 Identities=23% Similarity=0.345 Sum_probs=19.4
Q ss_pred chHHHHHHhcCCcEEEEEEcccCCCceEEecc
Q psy7618 103 VRPMVNHMLHGYNVTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 103 ~~plv~~~l~G~N~~i~aYG~TgSGKTyTm~G 134 (560)
+.+.++......+. +.-.|.||||||++|.-
T Consensus 130 ~~~~~~~~~~~~~~-ivl~G~TGsGKT~iL~~ 160 (345)
T PRK11784 130 VIDTLEEAPAQFPL-VVLGGNTGSGKTELLQA 160 (345)
T ss_pred hHHHHhhhcccCce-EecCCCCcccHHHHHHH
Confidence 33444443334443 55788999999988643
No 489
>PRK14738 gmk guanylate kinase; Provisional
Probab=26.22 E-value=28 Score=33.54 Aligned_cols=19 Identities=21% Similarity=0.401 Sum_probs=14.5
Q ss_pred CcEEEEEEcccCCCceEEe
Q psy7618 114 YNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 114 ~N~~i~aYG~TgSGKTyTm 132 (560)
..-.|+-.|++|+|||..+
T Consensus 12 ~~~~ivi~GpsG~GK~tl~ 30 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVL 30 (206)
T ss_pred CCeEEEEECcCCCCHHHHH
Confidence 3345667999999999754
No 490
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=26.06 E-value=42 Score=41.33 Aligned_cols=25 Identities=28% Similarity=0.519 Sum_probs=18.2
Q ss_pred HHHHhcCCcEEEEEEcccCCCceEEe
Q psy7618 107 VNHMLHGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 107 v~~~l~G~N~~i~aYG~TgSGKTyTm 132 (560)
|...+.+ |..++..|.||||||.-+
T Consensus 75 Il~~l~~-~~vvii~g~TGSGKTTql 99 (1283)
T TIGR01967 75 IAEAIAE-NQVVIIAGETGSGKTTQL 99 (1283)
T ss_pred HHHHHHh-CceEEEeCCCCCCcHHHH
Confidence 3344455 457788999999999854
No 491
>KOG1534|consensus
Probab=25.96 E-value=38 Score=33.01 Aligned_cols=15 Identities=27% Similarity=0.527 Sum_probs=12.8
Q ss_pred EEEEEEcccCCCceE
Q psy7618 116 VTIFAYGQTGTGKTF 130 (560)
Q Consensus 116 ~~i~aYG~TgSGKTy 130 (560)
..+|..|+.||||++
T Consensus 4 ya~lV~GpAgSGKST 18 (273)
T KOG1534|consen 4 YAQLVMGPAGSGKST 18 (273)
T ss_pred eeEEEEccCCCCcch
Confidence 357899999999975
No 492
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.84 E-value=42 Score=31.30 Aligned_cols=34 Identities=24% Similarity=0.290 Sum_probs=19.8
Q ss_pred hhHHHHHHHHHhhhCCCCCcCCCCCchhhhhccccCC
Q psy7618 416 LSLLAVNKVISSTVAGKTYIPYRDSLLTQLLQDSFGG 452 (560)
Q Consensus 416 ~SL~aL~~vI~al~~~~~~iPyRdSkLT~lLqdsLgG 452 (560)
+||..|..++. |. ..-.=|-+|-++..|=-.++|
T Consensus 136 rsle~l~~~l~-l~--dr~~IydNS~~~~~lv~e~~~ 169 (187)
T COG4185 136 RSLELLAQALT-LA--DRATIYDNSRLAPRLVAEFSG 169 (187)
T ss_pred HHHHHHHHHHh-hc--ceeEEecCCCCCceEEEEeCC
Confidence 47777776664 22 233457777777666555543
No 493
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=25.82 E-value=24 Score=41.62 Aligned_cols=19 Identities=26% Similarity=0.483 Sum_probs=16.5
Q ss_pred cEEEEEEcccCCCceEEec
Q psy7618 115 NVTIFAYGQTGTGKTFTME 133 (560)
Q Consensus 115 N~~i~aYG~TgSGKTyTm~ 133 (560)
++..+..|+||||||..|-
T Consensus 456 ~g~~~i~G~tGsGKS~l~~ 474 (818)
T PRK13830 456 VGHTLIFGPTGSGKSTLLA 474 (818)
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 5568999999999999874
No 494
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=25.79 E-value=27 Score=37.66 Aligned_cols=17 Identities=41% Similarity=0.507 Sum_probs=14.6
Q ss_pred cEEEEEEcccCCCceEE
Q psy7618 115 NVTIFAYGQTGTGKTFT 131 (560)
Q Consensus 115 N~~i~aYG~TgSGKTyT 131 (560)
...|+-+|+||+|||+.
T Consensus 50 ~~~ILliGp~G~GKT~L 66 (443)
T PRK05201 50 PKNILMIGPTGVGKTEI 66 (443)
T ss_pred CceEEEECCCCCCHHHH
Confidence 36799999999999964
No 495
>PRK13946 shikimate kinase; Provisional
Probab=25.78 E-value=29 Score=32.59 Aligned_cols=17 Identities=29% Similarity=0.450 Sum_probs=14.4
Q ss_pred cEEEEEEcccCCCceEE
Q psy7618 115 NVTIFAYGQTGTGKTFT 131 (560)
Q Consensus 115 N~~i~aYG~TgSGKTyT 131 (560)
.-+|+..|..|||||+.
T Consensus 10 ~~~I~l~G~~GsGKsti 26 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTV 26 (184)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 34699999999999975
No 496
>PRK00625 shikimate kinase; Provisional
Probab=25.76 E-value=28 Score=32.63 Aligned_cols=15 Identities=40% Similarity=0.459 Sum_probs=13.0
Q ss_pred EEEEEcccCCCceEE
Q psy7618 117 TIFAYGQTGTGKTFT 131 (560)
Q Consensus 117 ~i~aYG~TgSGKTyT 131 (560)
.|+-.|..|||||+.
T Consensus 2 ~I~LiG~pGsGKTT~ 16 (173)
T PRK00625 2 QIFLCGLPTVGKTSF 16 (173)
T ss_pred EEEEECCCCCCHHHH
Confidence 388999999999974
No 497
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=25.51 E-value=22 Score=36.03 Aligned_cols=19 Identities=47% Similarity=0.538 Sum_probs=16.0
Q ss_pred EEEEEEcccCCCceEEecc
Q psy7618 116 VTIFAYGQTGTGKTFTMEG 134 (560)
Q Consensus 116 ~~i~aYG~TgSGKTyTm~G 134 (560)
-.+.-+|++|+|||.++..
T Consensus 76 ~~i~~~G~~g~GKTtl~~~ 94 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAK 94 (270)
T ss_pred CEEEEECCCCCcHHHHHHH
Confidence 5788899999999988654
No 498
>PRK06851 hypothetical protein; Provisional
Probab=25.47 E-value=34 Score=36.26 Aligned_cols=28 Identities=29% Similarity=0.484 Sum_probs=22.4
Q ss_pred HHHHHHhcCCcEEEEEEcccCCCceEEe
Q psy7618 105 PMVNHMLHGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 105 plv~~~l~G~N~~i~aYG~TgSGKTyTm 132 (560)
..++.++++.+-.++--|++|+|||..|
T Consensus 204 s~~~~l~~~~~~~~~i~G~pG~GKstl~ 231 (367)
T PRK06851 204 DFVPSLTEGVKNRYFLKGRPGTGKSTML 231 (367)
T ss_pred hhHHhHhcccceEEEEeCCCCCcHHHHH
Confidence 3567777888888999999999998765
No 499
>PRK07667 uridine kinase; Provisional
Probab=25.45 E-value=38 Score=32.20 Aligned_cols=21 Identities=19% Similarity=0.140 Sum_probs=16.5
Q ss_pred cCCcEEEEEEcccCCCceEEe
Q psy7618 112 HGYNVTIFAYGQTGTGKTFTM 132 (560)
Q Consensus 112 ~G~N~~i~aYG~TgSGKTyTm 132 (560)
.|.-..|.-.|.+|||||+..
T Consensus 14 ~~~~~iIgI~G~~gsGKStla 34 (193)
T PRK07667 14 KENRFILGIDGLSRSGKTTFV 34 (193)
T ss_pred CCCCEEEEEECCCCCCHHHHH
Confidence 455567888899999999853
No 500
>PRK13947 shikimate kinase; Provisional
Probab=25.36 E-value=29 Score=31.83 Aligned_cols=15 Identities=47% Similarity=0.563 Sum_probs=12.6
Q ss_pred EEEEEcccCCCceEE
Q psy7618 117 TIFAYGQTGTGKTFT 131 (560)
Q Consensus 117 ~i~aYG~TgSGKTyT 131 (560)
.|+..|..|||||+.
T Consensus 3 ~I~l~G~~GsGKst~ 17 (171)
T PRK13947 3 NIVLIGFMGTGKTTV 17 (171)
T ss_pred eEEEEcCCCCCHHHH
Confidence 378899999999764
Done!